Query 008550
Match_columns 561
No_of_seqs 1251 out of 2454
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 06:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-46 2.2E-50 357.6 49.0 380 113-533 4-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-45 4E-50 355.9 47.3 381 48-500 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 6.4E-46 2.2E-50 379.1 48.0 481 4-530 87-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.8E-42 6.2E-47 353.6 44.4 435 41-533 82-564 (597)
5 2gw1_A Mitochondrial precursor 100.0 5.6E-41 1.9E-45 336.2 39.9 450 40-530 3-494 (514)
6 3fp2_A TPR repeat-containing p 100.0 7.2E-40 2.4E-44 330.0 38.7 445 40-526 22-503 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 3.2E-37 1.1E-41 303.4 42.9 365 128-533 12-439 (450)
8 2gw1_A Mitochondrial precursor 100.0 8.9E-37 3E-41 305.7 42.7 447 2-491 7-489 (514)
9 3fp2_A TPR repeat-containing p 100.0 4.4E-37 1.5E-41 309.7 38.0 432 3-485 27-495 (537)
10 2y4t_A DNAJ homolog subfamily 100.0 3.9E-36 1.3E-40 295.6 43.2 309 222-531 33-375 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 1E-35 3.6E-40 283.3 44.3 315 218-533 6-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 3.2E-35 1.1E-39 279.9 43.0 319 140-499 2-354 (359)
13 4g1t_A Interferon-induced prot 100.0 5.7E-35 2E-39 289.1 38.3 383 39-526 47-471 (472)
14 3hym_B Cell division cycle pro 100.0 2.1E-33 7E-38 264.1 34.5 295 238-533 11-319 (330)
15 3hym_B Cell division cycle pro 100.0 4.9E-33 1.7E-37 261.5 34.2 294 134-468 15-321 (330)
16 4g1t_A Interferon-induced prot 100.0 7.8E-33 2.7E-37 273.7 36.7 401 7-492 57-471 (472)
17 1fch_A Peroxisomal targeting s 100.0 1E-32 3.4E-37 263.7 26.0 289 224-514 34-359 (368)
18 2xm6_A Protein corresponding t 100.0 3E-29 1E-33 248.4 47.5 390 42-523 38-476 (490)
19 1fch_A Peroxisomal targeting s 100.0 7.7E-32 2.6E-36 257.5 28.0 306 117-481 34-359 (368)
20 2xm6_A Protein corresponding t 100.0 3.9E-29 1.3E-33 247.6 47.9 366 106-529 37-450 (490)
21 4eqf_A PEX5-related protein; a 100.0 6.1E-31 2.1E-35 250.9 25.8 263 250-513 66-355 (365)
22 2ooe_A Cleavage stimulation fa 100.0 1.3E-28 4.3E-33 246.5 42.8 413 42-520 12-498 (530)
23 4eqf_A PEX5-related protein; a 100.0 7E-30 2.4E-34 243.5 28.3 261 219-480 69-355 (365)
24 2ooe_A Cleavage stimulation fa 100.0 7.6E-28 2.6E-32 240.8 44.3 383 108-533 13-477 (530)
25 3cv0_A Peroxisome targeting si 100.0 1.5E-29 5E-34 237.4 28.6 279 218-517 24-318 (327)
26 3cv0_A Peroxisome targeting si 100.0 1.7E-29 6E-34 236.9 28.7 282 174-483 20-317 (327)
27 2h6f_A Protein farnesyltransfe 100.0 6.7E-30 2.3E-34 240.6 25.6 259 242-531 90-365 (382)
28 2h6f_A Protein farnesyltransfe 100.0 1.2E-29 4E-34 238.9 26.1 253 210-464 92-365 (382)
29 3u4t_A TPR repeat-containing p 100.0 8.5E-28 2.9E-32 219.0 26.4 246 284-532 4-268 (272)
30 3mkr_A Coatomer subunit epsilo 100.0 5E-27 1.7E-31 214.2 28.9 275 222-508 6-288 (291)
31 3u4t_A TPR repeat-containing p 100.0 2.5E-27 8.5E-32 215.9 26.1 249 140-429 2-267 (272)
32 3e4b_A ALGK; tetratricopeptide 100.0 2.7E-27 9.2E-32 230.5 27.9 376 47-515 7-422 (452)
33 3mkr_A Coatomer subunit epsilo 100.0 1.8E-26 6.2E-31 210.5 30.3 276 50-405 6-287 (291)
34 3uq3_A Heat shock protein STI1 100.0 5.9E-27 2E-31 211.6 25.5 236 284-528 6-256 (258)
35 2pl2_A Hypothetical conserved 100.0 9.9E-27 3.4E-31 203.1 24.0 198 138-376 2-211 (217)
36 2pl2_A Hypothetical conserved 100.0 8.8E-27 3E-31 203.4 23.4 194 282-477 4-210 (217)
37 3uq3_A Heat shock protein STI1 100.0 2.1E-26 7.1E-31 207.9 26.4 223 250-482 6-237 (258)
38 3e4b_A ALGK; tetratricopeptide 99.9 4.9E-26 1.7E-30 221.6 26.9 355 112-530 7-401 (452)
39 3sf4_A G-protein-signaling mod 99.9 1.1E-26 3.6E-31 225.0 21.3 288 215-503 9-365 (406)
40 3sf4_A G-protein-signaling mod 99.9 5.5E-26 1.9E-30 220.0 23.3 289 246-535 6-363 (406)
41 4a1s_A PINS, partner of inscut 99.9 1.8E-25 6.1E-30 216.8 22.0 282 212-521 45-379 (411)
42 4a1s_A PINS, partner of inscut 99.9 3E-25 1E-29 215.1 22.9 284 172-485 45-376 (411)
43 3ro2_A PINS homolog, G-protein 99.9 5.4E-25 1.8E-29 207.1 22.1 274 216-518 6-336 (338)
44 3ro2_A PINS homolog, G-protein 99.9 6.3E-25 2.2E-29 206.6 22.2 256 250-533 6-317 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.9E-26 2.4E-30 206.7 15.1 244 227-475 17-269 (275)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 9.7E-25 3.3E-29 199.0 20.9 247 258-508 14-269 (275)
47 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-24 7.5E-29 192.7 22.6 214 317-531 23-239 (243)
48 2q7f_A YRRB protein; TPR, prot 99.9 2.5E-24 8.6E-29 192.3 22.4 211 250-461 24-236 (243)
49 2ond_A Cleavage stimulation fa 99.9 1.2E-23 4E-28 194.6 24.8 249 266-526 33-304 (308)
50 3vtx_A MAMA; tetratricopeptide 99.9 1.6E-23 5.5E-28 178.2 23.6 172 348-520 3-176 (184)
51 1xi4_A Clathrin heavy chain; a 99.9 4E-21 1.4E-25 198.0 44.8 402 47-530 989-1412(1630)
52 1ouv_A Conserved hypothetical 99.9 2E-22 6.8E-27 183.3 31.7 234 245-522 2-259 (273)
53 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-23 9.8E-28 186.6 25.7 207 317-524 37-248 (252)
54 2vq2_A PILW, putative fimbrial 99.9 6.3E-23 2.2E-27 180.8 27.1 212 313-525 4-222 (225)
55 2ho1_A Type 4 fimbrial biogene 99.9 4.7E-23 1.6E-27 185.1 25.4 204 249-453 37-244 (252)
56 1ouv_A Conserved hypothetical 99.9 4E-22 1.4E-26 181.3 31.6 224 215-450 6-254 (273)
57 2ond_A Cleavage stimulation fa 99.9 7.6E-23 2.6E-27 189.2 27.1 257 158-460 33-305 (308)
58 3vtx_A MAMA; tetratricopeptide 99.9 3.2E-23 1.1E-27 176.3 22.7 168 248-415 4-173 (184)
59 1xi4_A Clathrin heavy chain; a 99.9 1.9E-21 6.6E-26 200.3 39.0 393 5-512 989-1426(1630)
60 3ulq_A Response regulator aspa 99.9 3.3E-23 1.1E-27 198.4 24.1 301 214-516 11-370 (383)
61 2vq2_A PILW, putative fimbrial 99.9 4.2E-22 1.4E-26 175.5 28.4 206 279-485 4-215 (225)
62 4i17_A Hypothetical protein; T 99.9 2.7E-22 9.1E-27 177.1 26.7 212 314-532 4-227 (228)
63 4abn_A Tetratricopeptide repea 99.9 4.1E-23 1.4E-27 202.3 23.3 213 299-511 84-318 (474)
64 4abn_A Tetratricopeptide repea 99.9 5.9E-23 2E-27 201.2 22.9 213 263-477 82-317 (474)
65 4i17_A Hypothetical protein; T 99.9 1.8E-21 6.3E-26 171.7 26.7 208 247-462 5-224 (228)
66 3ulq_A Response regulator aspa 99.9 2.7E-22 9.1E-27 192.1 22.5 308 41-412 10-368 (383)
67 4gyw_A UDP-N-acetylglucosamine 99.9 5.2E-22 1.8E-26 201.5 20.4 171 313-484 5-177 (723)
68 4gyw_A UDP-N-acetylglucosamine 99.9 1.2E-21 4E-26 198.9 20.9 172 278-450 4-177 (723)
69 3dra_A Protein farnesyltransfe 99.9 7E-20 2.4E-24 165.1 29.5 227 300-527 50-301 (306)
70 4e6h_A MRNA 3'-END-processing 99.9 5.4E-18 1.8E-22 169.9 45.7 227 300-526 326-582 (679)
71 3nf1_A KLC 1, kinesin light ch 99.9 3.4E-22 1.2E-26 185.6 13.6 65 214-278 26-98 (311)
72 1b89_A Protein (clathrin heavy 99.9 1.9E-22 6.6E-27 186.9 11.3 322 117-512 12-353 (449)
73 3nf1_A KLC 1, kinesin light ch 99.9 5.6E-22 1.9E-26 184.2 14.3 243 244-517 22-310 (311)
74 3dra_A Protein farnesyltransfe 99.9 7.3E-20 2.5E-24 165.0 26.5 242 224-493 41-301 (306)
75 3q15_A PSP28, response regulat 99.9 4.5E-20 1.5E-24 176.2 26.1 298 218-516 15-367 (378)
76 3qky_A Outer membrane assembly 99.9 1.4E-20 4.8E-25 169.7 20.3 204 312-533 10-246 (261)
77 3urz_A Uncharacterized protein 99.9 1.9E-20 6.5E-25 162.0 19.9 177 352-530 6-201 (208)
78 1b89_A Protein (clathrin heavy 99.9 2.3E-21 8E-26 179.6 14.2 351 109-503 33-406 (449)
79 1qqe_A Vesicular transport pro 99.9 2.9E-20 9.8E-25 170.2 21.2 199 330-529 51-284 (292)
80 3qky_A Outer membrane assembly 99.9 4.8E-20 1.6E-24 166.2 21.9 172 344-532 9-198 (261)
81 3q15_A PSP28, response regulat 99.9 4.8E-19 1.6E-23 169.0 28.2 235 143-411 103-364 (378)
82 4e6h_A MRNA 3'-END-processing 99.9 1.2E-17 4.1E-22 167.4 39.1 403 126-533 50-555 (679)
83 1hz4_A MALT regulatory protein 99.8 4E-19 1.4E-23 169.5 27.3 293 218-517 17-352 (373)
84 1hz4_A MALT regulatory protein 99.8 6.3E-19 2.2E-23 168.1 28.6 268 249-517 14-325 (373)
85 2pzi_A Probable serine/threoni 99.8 6.8E-20 2.3E-24 187.5 22.5 186 243-433 388-583 (681)
86 2pzi_A Probable serine/threoni 99.8 6.3E-20 2.2E-24 187.7 21.6 185 311-500 388-583 (681)
87 3urz_A Uncharacterized protein 99.8 1E-19 3.5E-24 157.4 18.4 171 218-389 7-196 (208)
88 1qqe_A Vesicular transport pro 99.8 1E-19 3.5E-24 166.5 18.3 239 233-491 3-280 (292)
89 4ga2_A E3 SUMO-protein ligase 99.8 4.4E-20 1.5E-24 150.2 13.1 144 323-467 3-149 (150)
90 4ga2_A E3 SUMO-protein ligase 99.8 2.6E-20 9E-25 151.5 10.6 144 222-365 4-149 (150)
91 3dss_A Geranylgeranyl transfer 99.8 1.9E-17 6.4E-22 149.8 29.9 241 226-485 40-308 (331)
92 3as5_A MAMA; tetratricopeptide 99.8 1E-18 3.5E-23 148.6 20.6 126 222-347 49-175 (186)
93 3as5_A MAMA; tetratricopeptide 99.8 1.1E-18 3.8E-23 148.3 20.3 166 218-383 11-177 (186)
94 3dss_A Geranylgeranyl transfer 99.8 8.7E-17 3E-21 145.5 31.0 226 301-527 48-317 (331)
95 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.4E-18 1.1E-22 150.0 20.8 187 316-519 3-218 (225)
96 3edt_B KLC 2, kinesin light ch 99.8 1.2E-18 4E-23 159.2 17.0 199 316-515 42-282 (283)
97 3q7a_A Farnesyltransferase alp 99.8 2.8E-17 9.7E-22 149.1 25.0 252 250-527 55-345 (349)
98 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.1E-17 3.7E-22 146.7 21.6 183 217-416 6-217 (225)
99 3edt_B KLC 2, kinesin light ch 99.8 6.3E-19 2.1E-23 161.0 14.1 225 226-481 12-281 (283)
100 4gco_A Protein STI-1; structur 99.8 1.3E-18 4.6E-23 136.4 12.8 119 410-529 6-125 (126)
101 2r5s_A Uncharacterized protein 99.8 2E-18 6.9E-23 145.0 14.7 166 347-513 3-172 (176)
102 3q7a_A Farnesyltransferase alp 99.8 1.2E-16 4.2E-21 145.0 26.2 185 142-366 55-258 (349)
103 2r5s_A Uncharacterized protein 99.8 2.8E-18 9.7E-23 144.1 13.5 159 251-410 8-171 (176)
104 2ifu_A Gamma-SNAP; membrane fu 99.8 5E-18 1.7E-22 156.6 16.0 188 326-517 45-266 (307)
105 4gco_A Protein STI-1; structur 99.8 1E-17 3.4E-22 131.3 14.1 117 344-461 7-124 (126)
106 3qou_A Protein YBBN; thioredox 99.7 1E-16 3.4E-21 146.0 20.5 168 244-411 112-283 (287)
107 3qou_A Protein YBBN; thioredox 99.7 8.4E-17 2.9E-21 146.5 19.8 166 314-480 114-283 (287)
108 3gyz_A Chaperone protein IPGC; 99.7 6.6E-18 2.3E-22 136.1 10.4 113 406-519 25-138 (151)
109 2ifu_A Gamma-SNAP; membrane fu 99.7 8.9E-17 3E-21 148.1 17.3 219 227-473 3-253 (307)
110 3rjv_A Putative SEL1 repeat pr 99.7 5.8E-16 2E-20 134.0 21.0 187 334-529 4-210 (212)
111 4f3v_A ESX-1 secretion system 99.7 3.7E-17 1.3E-21 143.4 13.0 221 219-458 11-247 (282)
112 3gyz_A Chaperone protein IPGC; 99.7 3.8E-17 1.3E-21 131.6 11.9 114 372-486 24-138 (151)
113 2vsy_A XCC0866; transferase, g 99.7 1.6E-16 5.6E-21 160.1 18.9 163 228-390 2-169 (568)
114 4f3v_A ESX-1 secretion system 99.7 8.6E-17 2.9E-21 141.1 13.9 201 187-423 18-247 (282)
115 2vsy_A XCC0866; transferase, g 99.7 1.3E-16 4.4E-21 160.8 17.4 162 330-492 3-169 (568)
116 1p5q_A FKBP52, FK506-binding p 99.7 4.3E-18 1.5E-22 158.6 4.6 184 330-516 79-296 (336)
117 3rjv_A Putative SEL1 repeat pr 99.7 2.9E-15 9.9E-20 129.6 22.2 160 283-447 18-197 (212)
118 2vgx_A Chaperone SYCD; alterna 99.7 7.2E-17 2.5E-21 130.6 10.2 126 404-530 8-134 (148)
119 1p5q_A FKBP52, FK506-binding p 99.7 9.3E-18 3.2E-22 156.3 4.9 150 330-480 127-293 (336)
120 3mv2_B Coatomer subunit epsilo 99.7 2.8E-15 9.5E-20 133.3 19.2 243 222-486 20-287 (310)
121 2fo7_A Synthetic consensus TPR 99.7 4.4E-15 1.5E-19 118.5 18.6 132 385-517 3-135 (136)
122 2c2l_A CHIP, carboxy terminus 99.7 3.8E-16 1.3E-20 141.5 13.7 195 140-378 3-198 (281)
123 2vgx_A Chaperone SYCD; alterna 99.7 2.1E-16 7.2E-21 127.8 10.5 118 236-353 8-126 (148)
124 3mv2_B Coatomer subunit epsilo 99.7 3E-14 1E-18 126.7 24.2 249 257-526 21-294 (310)
125 2c2l_A CHIP, carboxy terminus 99.7 5.1E-16 1.8E-20 140.7 13.1 104 246-349 1-105 (281)
126 2xcb_A PCRH, regulatory protei 99.7 3.5E-16 1.2E-20 125.9 10.0 120 406-526 7-127 (142)
127 2fo7_A Synthetic consensus TPR 99.7 1.1E-14 3.9E-19 116.0 18.9 130 252-381 4-134 (136)
128 2uy1_A Cleavage stimulation fa 99.7 1.8E-12 6.3E-17 126.5 38.0 346 122-513 28-412 (493)
129 3upv_A Heat shock protein STI1 99.6 4E-15 1.4E-19 117.1 14.8 116 416-532 3-125 (126)
130 2xcb_A PCRH, regulatory protei 99.6 9.1E-16 3.1E-20 123.5 10.9 120 237-356 6-126 (142)
131 2e2e_A Formate-dependent nitri 99.6 2.4E-15 8.1E-20 126.5 12.9 134 394-528 21-158 (177)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.7E-14 5.9E-19 125.3 18.0 97 353-452 9-105 (213)
133 1dce_A Protein (RAB geranylger 99.6 8.4E-16 2.9E-20 152.3 10.5 182 332-533 45-240 (567)
134 3ffl_A Anaphase-promoting comp 99.6 7.4E-15 2.5E-19 114.3 13.4 145 2-152 21-166 (167)
135 2e2e_A Formate-dependent nitri 99.6 1.3E-14 4.5E-19 121.8 15.0 130 225-354 20-153 (177)
136 2qfc_A PLCR protein; TPR, HTH, 99.6 6.5E-14 2.2E-18 128.1 20.6 166 349-515 74-267 (293)
137 1dce_A Protein (RAB geranylger 99.6 4.8E-14 1.6E-18 139.8 21.0 136 365-501 44-194 (567)
138 4gcn_A Protein STI-1; structur 99.6 1.8E-14 6.2E-19 113.0 14.5 110 417-528 8-125 (127)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-13 3.7E-18 120.2 19.8 131 217-350 8-155 (213)
140 3upv_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 111.8 14.5 106 220-325 9-120 (126)
141 2hr2_A Hypothetical protein; a 99.6 7.1E-15 2.4E-19 116.2 10.5 115 418-533 12-150 (159)
142 2fbn_A 70 kDa peptidylprolyl i 99.6 4E-15 1.4E-19 127.6 9.7 119 386-505 41-176 (198)
143 1a17_A Serine/threonine protei 99.6 1.2E-13 4E-18 114.6 17.9 129 385-514 15-146 (166)
144 2qfc_A PLCR protein; TPR, HTH, 99.6 2E-13 6.7E-18 124.9 20.7 170 250-447 76-266 (293)
145 1a17_A Serine/threonine protei 99.6 1.3E-13 4.4E-18 114.4 17.2 126 218-343 16-144 (166)
146 2fbn_A 70 kDa peptidylprolyl i 99.6 6.7E-15 2.3E-19 126.1 9.6 148 330-478 18-183 (198)
147 4gcn_A Protein STI-1; structur 99.6 5E-14 1.7E-18 110.4 13.8 107 385-492 10-123 (127)
148 3sz7_A HSC70 cochaperone (SGT) 99.6 1.6E-13 5.5E-18 113.5 17.0 115 213-327 9-123 (164)
149 2vyi_A SGTA protein; chaperone 99.6 6.6E-14 2.3E-18 110.8 13.7 112 218-329 15-126 (131)
150 2lni_A Stress-induced-phosphop 99.6 1.7E-13 5.9E-18 108.8 16.0 122 137-298 12-133 (133)
151 2lni_A Stress-induced-phosphop 99.6 8.9E-14 3E-18 110.5 14.2 112 217-328 18-129 (133)
152 3sz7_A HSC70 cochaperone (SGT) 99.5 1E-13 3.5E-18 114.7 14.9 116 245-360 7-123 (164)
153 2uy1_A Cleavage stimulation fa 99.5 8E-12 2.7E-16 122.0 30.5 362 47-480 18-412 (493)
154 2vyi_A SGTA protein; chaperone 99.5 2.4E-13 8.1E-18 107.6 16.0 123 137-299 8-130 (131)
155 3u3w_A Transcriptional activat 99.5 3.3E-13 1.1E-17 123.5 18.9 159 220-378 80-265 (293)
156 3q49_B STIP1 homology and U bo 99.5 1.9E-13 6.5E-18 109.2 15.1 119 412-531 4-128 (137)
157 1hxi_A PEX5, peroxisome target 99.5 9.7E-14 3.3E-18 107.7 12.2 98 386-484 20-117 (121)
158 1hxi_A PEX5, peroxisome target 99.5 1.5E-13 5E-18 106.7 12.8 100 219-318 21-120 (121)
159 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.4E-14 4.6E-19 140.9 8.5 142 330-472 248-405 (457)
160 3rkv_A Putative peptidylprolyl 99.5 1.7E-13 5.7E-18 113.1 13.9 114 419-533 13-146 (162)
161 1elw_A TPR1-domain of HOP; HOP 99.5 5E-13 1.7E-17 103.5 15.9 113 417-530 4-117 (118)
162 1na0_A Designed protein CTPR3; 99.5 7.9E-13 2.7E-17 103.5 16.6 114 249-362 9-123 (125)
163 1na0_A Designed protein CTPR3; 99.5 8.6E-13 2.9E-17 103.3 16.8 114 417-531 9-123 (125)
164 2dba_A Smooth muscle cell asso 99.5 5.1E-13 1.8E-17 108.3 15.5 120 412-532 23-146 (148)
165 3u3w_A Transcriptional activat 99.5 1.1E-12 3.6E-17 120.1 18.8 157 290-447 82-266 (293)
166 3q49_B STIP1 homology and U bo 99.5 4.6E-13 1.6E-17 107.0 14.3 104 245-348 5-109 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.6E-14 8.9E-19 138.9 8.2 144 227-370 246-405 (457)
168 1elw_A TPR1-domain of HOP; HOP 99.5 2.6E-12 8.9E-17 99.4 17.5 109 219-327 8-116 (118)
169 2hr2_A Hypothetical protein; a 99.5 2.4E-13 8.3E-18 107.5 11.3 99 386-485 14-135 (159)
170 3gw4_A Uncharacterized protein 99.5 4.1E-13 1.4E-17 115.5 12.8 154 226-379 3-176 (203)
171 3rkv_A Putative peptidylprolyl 99.5 7E-13 2.4E-17 109.3 13.1 113 351-464 12-144 (162)
172 2xev_A YBGF; tetratricopeptide 99.5 1.7E-12 5.9E-17 102.3 14.9 113 419-532 4-123 (129)
173 3gw4_A Uncharacterized protein 99.5 9.5E-13 3.3E-17 113.2 14.5 154 361-516 3-178 (203)
174 2xev_A YBGF; tetratricopeptide 99.4 3.9E-12 1.3E-16 100.3 16.1 109 219-327 6-120 (129)
175 2dba_A Smooth muscle cell asso 99.4 3.2E-12 1.1E-16 103.5 15.3 114 214-327 27-143 (148)
176 1zu2_A Mitochondrial import re 99.4 4.8E-13 1.6E-17 105.5 9.6 111 395-528 14-134 (158)
177 2kck_A TPR repeat; tetratricop 99.4 6.1E-13 2.1E-17 101.9 9.9 103 414-517 3-109 (112)
178 2if4_A ATFKBP42; FKBP-like, al 99.4 3.8E-13 1.3E-17 125.2 9.9 157 348-521 177-335 (338)
179 1elr_A TPR2A-domain of HOP; HO 99.4 2.8E-12 9.7E-17 101.3 13.7 115 417-533 4-126 (131)
180 2if4_A ATFKBP42; FKBP-like, al 99.4 2.6E-13 9E-18 126.2 8.4 155 314-485 176-332 (338)
181 1zu2_A Mitochondrial import re 99.4 7.7E-13 2.6E-17 104.3 9.6 82 432-513 16-112 (158)
182 1wao_1 Serine/threonine protei 99.4 1.2E-13 4.2E-18 134.6 6.1 121 388-509 11-134 (477)
183 4b4t_Q 26S proteasome regulato 99.4 2.7E-11 9.2E-16 117.7 22.2 194 218-411 7-244 (434)
184 1elr_A TPR2A-domain of HOP; HO 99.4 4.2E-12 1.5E-16 100.3 13.6 115 384-499 5-126 (131)
185 1wao_1 Serine/threonine protei 99.4 5.3E-13 1.8E-17 130.2 9.6 129 222-350 13-155 (477)
186 2kck_A TPR repeat; tetratricop 99.4 3.4E-12 1.2E-16 97.7 11.8 104 279-382 2-109 (112)
187 4b4t_Q 26S proteasome regulato 99.4 1.3E-11 4.3E-16 120.1 18.5 214 284-514 5-245 (434)
188 3k9i_A BH0479 protein; putativ 99.4 1E-12 3.4E-17 101.5 7.9 97 227-323 2-101 (117)
189 3k9i_A BH0479 protein; putativ 99.4 3.3E-12 1.1E-16 98.6 9.6 98 153-290 2-102 (117)
190 1ihg_A Cyclophilin 40; ppiase 99.3 1.2E-11 4.1E-16 116.2 14.1 119 353-472 226-361 (370)
191 3ro3_A PINS homolog, G-protein 99.3 1.2E-11 4.1E-16 101.9 11.7 130 386-516 12-160 (164)
192 1ihg_A Cyclophilin 40; ppiase 99.3 1.7E-11 5.7E-16 115.2 13.9 120 250-369 224-360 (370)
193 3ro3_A PINS homolog, G-protein 99.3 2.7E-11 9.2E-16 99.7 12.6 131 351-482 10-159 (164)
194 2kat_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 88.9 10.7 82 436-517 3-85 (115)
195 2kat_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 86.9 11.4 83 401-484 3-85 (115)
196 2l6j_A TPR repeat-containing p 99.1 4.1E-11 1.4E-15 91.4 5.6 92 384-476 5-102 (111)
197 2l6j_A TPR repeat-containing p 99.1 1.3E-10 4.6E-15 88.5 6.9 88 220-307 9-102 (111)
198 1na3_A Designed protein CTPR2; 99.1 2E-09 6.8E-14 78.4 12.7 82 384-466 10-91 (91)
199 1klx_A Cysteine rich protein B 99.1 4.1E-09 1.4E-13 83.4 14.9 120 397-526 9-136 (138)
200 1na3_A Designed protein CTPR2; 99.1 1.5E-09 5.1E-14 79.1 11.0 78 250-327 10-87 (91)
201 3ma5_A Tetratricopeptide repea 99.1 1E-09 3.4E-14 81.5 9.9 68 449-516 4-72 (100)
202 3ma5_A Tetratricopeptide repea 99.0 2.1E-09 7.2E-14 79.8 10.6 85 412-497 2-89 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 8.6E-10 2.9E-14 81.9 7.8 89 220-316 5-94 (99)
204 3ly7_A Transcriptional activat 99.0 2.5E-08 8.7E-13 90.3 17.4 122 399-520 215-345 (372)
205 2kc7_A BFR218_protein; tetratr 99.0 1.8E-09 6.1E-14 80.2 7.7 67 388-455 5-72 (99)
206 1klx_A Cysteine rich protein B 99.0 2.3E-08 8E-13 79.0 14.6 109 331-447 10-126 (138)
207 3u64_A Protein TP_0956; tetrat 98.9 3.9E-08 1.3E-12 85.1 15.9 108 411-518 146-273 (301)
208 1pc2_A Mitochondria fission pr 98.9 1.5E-08 5.3E-13 78.8 12.2 101 433-533 13-119 (152)
209 3ly7_A Transcriptional activat 98.9 4.4E-08 1.5E-12 88.8 16.2 155 240-417 185-344 (372)
210 3u64_A Protein TP_0956; tetrat 98.8 2.4E-07 8.3E-12 80.2 16.9 84 401-484 181-272 (301)
211 3n71_A Histone lysine methyltr 98.8 2.4E-08 8.3E-13 96.4 11.9 126 389-515 315-465 (490)
212 3bee_A Putative YFRE protein; 98.8 1.2E-07 4E-12 68.4 11.3 73 245-317 2-77 (93)
213 3bee_A Putative YFRE protein; 98.7 1.3E-07 4.3E-12 68.2 10.4 71 413-484 2-75 (93)
214 3n71_A Histone lysine methyltr 98.7 1.1E-07 3.6E-12 92.0 13.1 123 358-481 317-464 (490)
215 4g26_A Pentatricopeptide repea 98.7 4.5E-06 1.5E-10 81.4 23.1 174 320-494 29-219 (501)
216 2v5f_A Prolyl 4-hydroxylase su 98.7 4E-07 1.4E-11 67.7 11.9 82 451-532 4-93 (104)
217 4g26_A Pentatricopeptide repea 98.6 1.2E-05 4.1E-10 78.4 24.8 160 286-446 29-203 (501)
218 1pc2_A Mitochondria fission pr 98.6 4.6E-07 1.6E-11 70.6 11.1 95 230-324 13-112 (152)
219 1nzn_A CGI-135 protein, fissio 98.6 1.1E-06 3.8E-11 65.6 12.0 101 432-532 15-121 (126)
220 3qww_A SET and MYND domain-con 98.4 3.2E-06 1.1E-10 80.3 13.7 97 432-528 312-430 (433)
221 2v5f_A Prolyl 4-hydroxylase su 98.4 4.1E-06 1.4E-10 62.1 11.1 73 218-290 8-87 (104)
222 3qwp_A SET and MYND domain-con 98.3 1.6E-05 5.5E-10 75.6 15.5 100 428-528 298-419 (429)
223 3kae_A CDC27, possible protein 98.3 0.00024 8.2E-09 54.9 18.2 131 3-180 4-153 (242)
224 4h7y_A Dual specificity protei 98.2 5.2E-05 1.8E-09 57.8 13.6 54 330-383 74-127 (161)
225 3qww_A SET and MYND domain-con 98.2 1.3E-05 4.6E-10 76.0 12.5 82 364-446 312-410 (433)
226 3qwp_A SET and MYND domain-con 98.2 1.4E-05 4.9E-10 76.0 11.9 122 3-180 289-415 (429)
227 1y8m_A FIS1; mitochondria, unk 98.1 0.00017 5.6E-09 54.8 14.0 84 449-532 36-124 (144)
228 1nzn_A CGI-135 protein, fissio 98.1 4.8E-05 1.6E-09 56.9 10.6 96 229-324 15-115 (126)
229 3o48_A Mitochondria fission 1 98.0 0.00011 3.7E-09 55.0 11.6 83 451-533 39-126 (134)
230 4h7y_A Dual specificity protei 98.0 0.00024 8.3E-09 54.2 13.5 111 412-524 8-133 (161)
231 3ffl_A Anaphase-promoting comp 97.9 9.6E-05 3.3E-09 57.8 10.4 44 452-495 122-165 (167)
232 1y8m_A FIS1; mitochondria, unk 97.3 0.011 3.7E-07 45.0 13.7 79 246-324 36-118 (144)
233 4gns_B Protein CSD3, chitin bi 97.3 0.096 3.3E-06 52.9 24.7 60 217-276 339-398 (754)
234 3o48_A Mitochondria fission 1 97.2 0.0058 2E-07 45.8 10.9 76 248-323 39-118 (134)
235 3txn_A 26S proteasome regulato 97.2 0.15 5.2E-06 47.2 26.0 91 355-446 104-209 (394)
236 1zbp_A Hypothetical protein VP 96.9 0.019 6.5E-07 49.1 13.2 128 116-248 5-133 (273)
237 1qsa_A Protein (soluble lytic 96.9 0.4 1.4E-05 47.6 38.6 116 330-446 228-347 (618)
238 1qsa_A Protein (soluble lytic 96.9 0.41 1.4E-05 47.5 37.1 206 290-509 221-437 (618)
239 3txn_A 26S proteasome regulato 96.8 0.065 2.2E-06 49.6 17.0 91 422-513 104-209 (394)
240 3kae_A CDC27, possible protein 96.8 0.12 4.1E-06 40.3 17.8 117 226-350 13-148 (242)
241 3mkq_A Coatomer beta'-subunit; 96.8 0.06 2E-06 56.4 19.1 46 118-167 662-707 (814)
242 4gns_B Protein CSD3, chitin bi 96.7 0.023 7.7E-07 57.4 13.7 54 423-477 343-396 (754)
243 3mkq_A Coatomer beta'-subunit; 96.7 0.44 1.5E-05 49.7 24.4 41 330-375 666-706 (814)
244 4b4t_P 26S proteasome regulato 96.4 0.23 7.9E-06 47.3 18.2 203 3-244 19-247 (445)
245 3mkq_B Coatomer subunit alpha; 96.1 0.27 9.1E-06 39.3 14.0 44 361-408 16-59 (177)
246 4fhn_B Nucleoporin NUP120; pro 96.1 1.2 4.2E-05 48.3 23.8 142 255-400 818-988 (1139)
247 1zbp_A Hypothetical protein VP 96.0 0.08 2.7E-06 45.4 11.3 121 222-349 4-133 (273)
248 3mkq_B Coatomer subunit alpha; 95.9 0.41 1.4E-05 38.3 14.4 73 224-309 14-86 (177)
249 3lvg_A Clathrin heavy chain 1; 95.8 8.3E-05 2.8E-09 68.9 -8.4 243 104-370 50-324 (624)
250 2ff4_A Probable regulatory pro 95.5 0.25 8.4E-06 46.2 13.9 99 211-309 111-231 (388)
251 4ady_A RPN2, 26S proteasome re 95.5 2.7 9.4E-05 43.5 25.8 298 224-529 383-714 (963)
252 3spa_A Mtrpol, DNA-directed RN 95.5 0.29 1E-05 50.8 14.8 97 284-380 128-231 (1134)
253 3spa_A Mtrpol, DNA-directed RN 95.4 0.2 6.9E-06 51.9 13.3 97 317-413 127-231 (1134)
254 2ff4_A Probable regulatory pro 95.0 0.42 1.4E-05 44.6 13.6 109 357-480 122-233 (388)
255 4b4t_P 26S proteasome regulato 94.8 2.9 9.8E-05 39.8 21.9 185 228-412 29-247 (445)
256 3lpz_A GET4 (YOR164C homolog); 94.7 2.3 7.9E-05 38.1 23.4 136 2-165 13-160 (336)
257 4b4t_S RPN3, 26S proteasome re 94.6 1.7 5.8E-05 41.5 16.4 60 353-414 234-301 (523)
258 4b4t_S RPN3, 26S proteasome re 94.5 0.041 1.4E-06 52.3 5.4 150 10-174 145-303 (523)
259 4ady_A RPN2, 26S proteasome re 94.4 5.5 0.00019 41.4 30.5 261 259-528 384-671 (963)
260 4b4t_R RPN7, 26S proteasome re 94.1 0.55 1.9E-05 44.6 12.4 96 351-447 132-237 (429)
261 1ya0_A SMG-7 transcript varian 93.7 0.51 1.7E-05 45.3 11.3 78 419-497 154-232 (497)
262 4fhn_B Nucleoporin NUP120; pro 93.3 2.6 8.9E-05 45.8 17.4 32 345-376 837-868 (1139)
263 1ya0_A SMG-7 transcript varian 93.2 0.79 2.7E-05 44.0 11.6 76 252-327 155-230 (497)
264 4b4t_R RPN7, 26S proteasome re 92.7 0.91 3.1E-05 43.0 11.3 97 385-482 133-238 (429)
265 3lvg_A Clathrin heavy chain 1; 92.2 1.8E-05 6.2E-10 73.1 -20.4 265 139-473 52-325 (624)
266 2wpv_A GET4, UPF0363 protein Y 89.5 11 0.00038 33.5 20.1 136 2-165 14-158 (312)
267 2wpv_A GET4, UPF0363 protein Y 83.9 23 0.00078 31.5 26.5 20 391-410 196-215 (312)
268 3lpz_A GET4 (YOR164C homolog); 82.7 26 0.0009 31.3 28.7 26 348-373 134-159 (336)
269 1wy6_A Hypothetical protein ST 74.1 26 0.00089 26.5 10.6 90 390-480 14-153 (172)
270 3ax2_A Mitochondrial import re 74.1 11 0.00039 24.7 5.9 35 489-523 21-55 (73)
271 2crb_A Nuclear receptor bindin 73.4 8.7 0.0003 26.3 5.2 35 38-72 10-44 (97)
272 4gq2_M Nucleoporin NUP120; bet 72.3 31 0.0011 36.5 12.1 33 318-350 898-932 (950)
273 4gq2_M Nucleoporin NUP120; bet 70.4 26 0.00089 37.1 11.0 113 389-520 816-933 (950)
274 3t5x_A PCI domain-containing p 67.6 6.7 0.00023 32.4 4.7 40 36-75 7-46 (203)
275 2ynq_A ESSB; membrane protein, 65.2 41 0.0014 26.1 8.1 88 45-167 10-99 (161)
276 1om2_A Protein (mitochondrial 63.3 6.7 0.00023 27.3 3.2 30 45-74 22-51 (95)
277 3t5v_B Nuclear mRNA export pro 62.4 25 0.00087 33.2 8.1 63 456-518 180-254 (455)
278 2ijq_A Hypothetical protein; s 62.0 52 0.0018 25.7 8.4 61 217-277 34-103 (161)
279 4a5x_A MITD1, MIT domain-conta 60.9 14 0.00046 25.4 4.5 34 40-73 13-46 (86)
280 3ax2_A Mitochondrial import re 58.8 35 0.0012 22.4 6.4 32 219-250 21-52 (73)
281 2vkj_A TM1634; membrane protei 57.8 19 0.00063 24.4 4.4 33 40-72 50-82 (106)
282 1om2_A Protein (mitochondrial 56.9 19 0.00066 25.1 4.6 29 457-485 25-53 (95)
283 2w2u_A Hypothetical P60 katani 55.8 17 0.00057 24.7 4.2 31 42-72 18-48 (83)
284 3esl_A Checkpoint serine/threo 54.6 86 0.003 25.5 12.5 80 404-485 58-148 (202)
285 2rpa_A Katanin P60 ATPase-cont 54.5 9.2 0.00032 25.5 2.6 28 45-72 14-41 (78)
286 2ijq_A Hypothetical protein; s 54.0 73 0.0025 24.9 8.0 66 144-244 35-104 (161)
287 3re2_A Predicted protein; meni 53.6 94 0.0032 27.9 9.3 66 415-480 253-324 (472)
288 3t5v_B Nuclear mRNA export pro 52.5 28 0.00097 32.9 6.6 68 9-76 184-254 (455)
289 2v6y_A AAA family ATPase, P60 52.1 20 0.0007 24.3 4.2 29 44-72 12-40 (83)
290 3t5x_A PCI domain-containing p 48.4 40 0.0014 27.7 6.2 29 218-246 17-45 (203)
291 3esl_A Checkpoint serine/threo 47.6 1.1E+02 0.0039 24.9 14.0 48 332-379 95-144 (202)
292 2crb_A Nuclear receptor bindin 47.1 30 0.001 23.7 4.2 24 455-478 18-41 (97)
293 4a1g_A Mitotic checkpoint seri 45.3 1E+02 0.0035 23.7 9.4 49 437-485 84-134 (152)
294 3u84_A Menin; MLL, JUND, ledgf 44.3 1.5E+02 0.0051 27.3 9.3 41 488-528 321-367 (550)
295 2rpa_A Katanin P60 ATPase-cont 42.6 26 0.00089 23.4 3.4 27 488-514 15-41 (78)
296 2v6x_A Vacuolar protein sortin 41.9 48 0.0017 22.4 4.9 32 41-72 11-42 (85)
297 2cwy_A Hypothetical protein TT 40.9 89 0.003 21.7 6.6 54 458-513 7-67 (94)
298 1wfd_A Hypothetical protein 15 39.6 64 0.0022 22.4 5.2 34 40-73 12-45 (93)
299 4aez_C MAD3, mitotic spindle c 39.3 1.7E+02 0.0057 24.4 9.9 47 469-515 131-180 (223)
300 3mv2_A Coatomer subunit alpha; 39.0 2.1E+02 0.0071 25.4 13.5 32 213-244 112-143 (325)
301 2cwy_A Hypothetical protein TT 38.3 98 0.0034 21.5 6.4 56 220-277 6-67 (94)
302 4a5x_A MITD1, MIT domain-conta 37.3 46 0.0016 22.7 4.1 17 496-512 27-43 (86)
303 2cfu_A SDSA1; SDS-hydrolase, l 37.2 1E+02 0.0036 30.9 8.4 46 488-533 452-497 (658)
304 2vkj_A TM1634; membrane protei 36.4 99 0.0034 21.0 6.9 30 456-485 57-86 (106)
305 2w2u_A Hypothetical P60 katani 36.0 48 0.0016 22.4 4.0 18 496-513 30-47 (83)
306 2cpt_A SKD1 protein, vacuolar 35.1 46 0.0016 24.3 4.1 33 41-73 16-48 (117)
307 3iqu_A 14-3-3 protein sigma; s 34.8 2E+02 0.007 24.1 14.4 58 317-374 8-68 (236)
308 2v6y_A AAA family ATPase, P60 33.9 54 0.0018 22.1 4.0 18 496-513 22-39 (83)
309 3bu8_A Telomeric repeat-bindin 33.6 2E+02 0.0069 23.7 8.4 51 435-485 89-147 (235)
310 2wvi_A Mitotic checkpoint seri 33.5 1.7E+02 0.0059 22.9 10.5 62 110-174 68-129 (164)
311 4gq4_A Menin; tumor suppressor 33.2 2.9E+02 0.0099 25.5 9.4 66 415-480 260-331 (489)
312 2qx5_A Nucleoporin NIC96; mRNA 32.1 4E+02 0.014 26.6 13.8 31 487-518 538-570 (661)
313 3bu8_A Telomeric repeat-bindin 29.9 2.3E+02 0.008 23.3 8.3 67 231-297 88-162 (235)
314 3uzd_A 14-3-3 protein gamma; s 27.3 2.8E+02 0.0097 23.4 16.3 46 435-480 148-202 (248)
315 2cfu_A SDSA1; SDS-hydrolase, l 26.9 1.1E+02 0.0038 30.6 6.6 49 249-297 449-497 (658)
316 3re2_A Predicted protein; meni 26.5 2.3E+02 0.008 25.5 7.5 45 335-379 276-325 (472)
317 3ph0_C ASCG; type III secretio 25.9 79 0.0027 19.3 3.1 40 16-63 21-60 (61)
318 3lxu_X Tripeptidyl-peptidase 2 25.3 7.2E+02 0.025 27.4 16.6 55 448-502 1280-1334(1354)
319 2dl1_A Spartin; SPG20, MIT, st 25.0 95 0.0032 22.5 4.1 14 465-478 35-48 (116)
320 3u84_A Menin; MLL, JUND, ledgf 24.7 3.9E+02 0.013 24.7 8.7 45 335-379 298-347 (550)
321 3ubw_A 14-3-3E, 14-3-3 protein 24.6 3.3E+02 0.011 23.3 17.0 46 435-480 173-227 (261)
322 2npm_A 14-3-3 domain containin 24.6 3.3E+02 0.011 23.3 17.9 46 435-480 173-226 (260)
323 2ynq_A ESSB; membrane protein, 24.6 2.5E+02 0.0085 21.8 10.8 52 107-158 7-58 (161)
324 3bqo_A Telomeric repeat-bindin 24.4 39 0.0013 27.3 2.2 37 222-258 124-160 (211)
325 3myv_A SUSD superfamily protei 24.1 1.2E+02 0.0043 28.5 6.2 35 38-72 185-219 (454)
326 1wfd_A Hypothetical protein 15 23.9 99 0.0034 21.4 4.0 16 504-519 41-56 (93)
327 3s6n_M SurviVal motor neuron p 23.6 62 0.0021 17.4 2.1 17 57-73 16-32 (37)
328 1o9d_A 14-3-3-like protein C; 22.6 3.6E+02 0.012 23.0 14.7 160 252-411 11-206 (260)
329 3kez_A Putative sugar binding 21.8 1.4E+02 0.0048 28.2 6.1 35 38-72 191-225 (461)
330 2br9_A 14-3-3E, 14-3-3 protein 21.7 3.6E+02 0.012 22.6 16.7 46 435-480 147-201 (234)
331 4b4t_O 26S proteasome regulato 20.9 4.9E+02 0.017 23.9 10.6 60 454-513 129-197 (393)
332 3bqo_A Telomeric repeat-bindin 20.2 1.8E+02 0.006 23.6 5.1 43 254-296 122-164 (211)
333 3mcx_A SUSD superfamily protei 20.1 1.6E+02 0.0054 28.1 6.0 35 39-73 198-232 (477)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.5e-46 Score=357.59 Aligned_cols=380 Identities=21% Similarity=0.269 Sum_probs=367.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccH
Q 008550 113 KIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI 191 (561)
Q Consensus 113 ~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 191 (561)
.+|..+.+.|++++|+..++.+ ...|.++.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l---------- 73 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL---------- 73 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH----------
Confidence 3688999999999999999885 55689999999999999999999999999999999999999988777
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 74 ------------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 74 ------------------------------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------------------HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|+++++.+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++.. |++++|+..|++++..+|.++
T Consensus 124 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 203 (388)
T 1w3b_A 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203 (388)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.++..+|.++...|++++|+..|++++..+|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5699999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
. |++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++...|++++|+..|
T Consensus 284 ~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 284 K-GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp H-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 509 EAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 509 ~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++++++|+++.++..++.+...++
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999987765
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-45 Score=355.87 Aligned_cols=381 Identities=16% Similarity=0.200 Sum_probs=364.9
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHH
Q 008550 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (561)
Q Consensus 48 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 127 (561)
.+|..+++.|+|++|+..|+++++.+|+++ .++..++.++...|++++|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------------------------~~~~~l~~~~~~~~~~~~a 52 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNT-------------------------------GVLLLLSSIHFQCRRLDRS 52 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------------------HHHHHHHHHHHHcCCHHHH
Confidence 468889999999999999999999987544 5788899999999999999
Q ss_pred HHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC
Q 008550 128 IVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (561)
Q Consensus 128 ~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (561)
+..++. +...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 53 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------- 107 (388)
T 1w3b_A 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL------------------------- 107 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------
Confidence 999988 455688999999999999999999999999999999999998888777
Q ss_pred CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHH
Q 008550 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 108 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 108 ---------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp ---------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
..+|.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
+++|+..|+++++..|++ .++..+|.++...|++++|+..|+++++..|+++.++..+|.++... |++++|+..++++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999999999987 67999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
++..|+++.++..+|.++...|++++|+..|+++++..|+. .++..+|.++..+|+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999987 899999999988774
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-46 Score=379.09 Aligned_cols=481 Identities=18% Similarity=0.155 Sum_probs=416.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+...++.+...|+++.|+.+...++...+ ....++.+|.+++..|++++|+..|++++...
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 147 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---------- 147 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG----------
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCC---------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccc----------
Confidence 45567778888888888888888776532 11466788888888999999988888876542
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCc----------------ccchhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSK----------------ARNLQMSLL 146 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~----------------~~~~~~~~~ 146 (561)
.+..++..++.+|.+.|++++|+..|+++ +.. +.+..+++.
T Consensus 148 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 148 ----------------------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL 205 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHH
T ss_pred ----------------------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHH
Confidence 33468999999999999999999999963 333 345789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh-HHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR-WLHRYVEAQCC 225 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~ 225 (561)
+|.+|.+.|++++|+..|+++++.+|.+..++..++.++...+................+ ..... ...+...+..+
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK---EDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG---GGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc---chHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877655443332211110000000 00000 00111225566
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
...|++++|+.+|+++++. |.++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|...
T Consensus 283 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6789999999999999887 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-
Q 008550 306 VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383 (561)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 383 (561)
+++++...|.++.++..+|.++.. |++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh------CCCC-HHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL------EPGY-LGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~ 456 (561)
.++..++.++...|++++|+..|+++++..|.++.++..+|.++... |++++|+..|+++++. +|++ ..++.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 67999999999999999999999999999999999999999999998 9999999999999998 5654 67999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.+|.++...|++++|+..++++++..|++ .++..+|.+|...|++++|.+.|+++++++|+++.++..++.++.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999976 899999999999999999999999999999999999999988753
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-42 Score=353.56 Aligned_cols=435 Identities=13% Similarity=0.094 Sum_probs=386.9
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
.....+..++..+.+.|++++|+..|++++...|+. ..++.++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--------------------------------~~~~~l~~~~~~ 129 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--------------------------------NDAFWLAQVYCC 129 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--------------------------------hHHHHHHHHHHH
Confidence 456678899999999999999999999999887522 367789999999
Q ss_pred cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccc
Q 008550 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN 200 (561)
Q Consensus 121 ~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (561)
.|++++|+..++++...+.++.++..+|.+|.+.|++++|+..|++ ..|......... ...
T Consensus 130 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~-----~~~----------- 190 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNAN-----KLL----------- 190 (597)
T ss_dssp TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC--------------------------
T ss_pred cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccc-----ccc-----------
Confidence 9999999999999876788899999999999999999999999986 345442211100 000
Q ss_pred ccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------
Q 008550 201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAK----------------------- 257 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~----------------------- 257 (561)
......+......+..|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 191 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 191 -----MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp -----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred -----ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 0001122334445566999999999999999999999999999988777654
Q ss_pred ---------------HHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 258 ---------------VDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 258 ---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
.|...|++++|+..|+++++. |.+...+..++.++...|++++|+..|++++...|.+..++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 334678899999999999888 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
++.++.. |++++|+..+++++...|.+..++..+|.+|...|++++|+..|+++++..|.+ .+|..++.++...|+++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999987 57999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..|++++...|++..++..+|.++... |++++|+..|+++++..|.++.++..+|.++.+.|++++|++.|+++++
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999998
Q ss_pred h------CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 481 D------WAD--DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
. .|+ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...+
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 8 555 3799999999999999999999999999999999999999999998876
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-41 Score=336.20 Aligned_cols=450 Identities=16% Similarity=0.174 Sum_probs=362.0
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++.+|..++..|+|++|+..|++++..+|+ ..+++.+|.++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~la~~~~ 50 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------------------------------PVFYSNLSACYV 50 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC--------------------------------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc--------------------------------HHHHHhHHHHHH
Confidence 345678999999999999999999999999999752 357999999999
Q ss_pred hcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|++++...|.+......+................+
T Consensus 51 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (514)
T 2gw1_A 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130 (514)
T ss_dssp HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 5569999999999999999999999999999999999976554433322221111111111111
Q ss_pred ccccCC--CCCCCCChhhHHHHHHHHHHHHHccCHHHHHHH--HHHHHHh--------CCCCHHHHHHHHHHHHH---hC
Q 008550 199 PNRSGR--APFDHLDSSRWLHRYVEAQCCIASNDYKGGLEL--FAELLQR--------FPNNIHILLEMAKVDAI---IG 263 (561)
Q Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~--~~~~~~~--------~~~~~~~~~~la~~~~~---~~ 263 (561)
...... .+... .+... .+. ............. +...... .|+++.+++.+|.++.. .|
T Consensus 131 ~~~~~~~~~~~~~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
T 2gw1_A 131 GDIDTATATPTEL----STQPA--KER-KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE 203 (514)
T ss_dssp ---------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred HHHHHHHHhhhhc----cCChh--hHH-HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence 000000 00000 00000 000 0000000000000 0000111 25568888999998887 89
Q ss_pred CHHHHHHHHHHHHh-----h--C-------CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 264 KNDEAILNFEKVRS-----I--D-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 264 ~~~~A~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++++|+..|+++++ . + |.++.++..+|.++...|++++|+..+++++...|. +.++..+|.++..
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 99999999999998 5 3 444678899999999999999999999999999999 9999999999999
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 679999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCChHHHHHHHHHH
Q 008550 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVI---EGRNGDAVSLLERY 478 (561)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~~ 478 (561)
+++...|+++.++..+|.++... |++++|+..+++++...|+++. ++..+|.++.. .|++++|+..++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999888755 89999999999 99999999999999
Q ss_pred HhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 479 LKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 479 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+...|++ .++..+|.++...|++++|...|+++++++|+++.++..+..+..
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999877 889999999999999999999999999999999999887766554
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=7.2e-40 Score=329.99 Aligned_cols=445 Identities=14% Similarity=0.114 Sum_probs=351.9
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++.+|..++..|+|++|+..|++++..+|.++ .+++.+|.++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------~~~~~la~~~~ 70 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-------------------------------VFYSNISACYI 70 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-------------------------------HHHHHHHHHHH
Confidence 44678999999999999999999999999999987554 58999999999
Q ss_pred hcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+ ++...|+....+.... ...+....+....
T Consensus 71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPM---LERNLNKQAMKVL 146 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CH---HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999984 5569999999999999999999999999996 8888887665542211 0111111222222
Q ss_pred ccccCCCCCCC--CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHhCCHHHH
Q 008550 199 PNRSGRAPFDH--LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKV--------DAIIGKNDEA 268 (561)
Q Consensus 199 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--------~~~~~~~~~A 268 (561)
.......+... ..+... ....+....+...+...+.+.....+........++.. ....|++++|
T Consensus 147 ~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNT-----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHCC-------CCCCCHH-----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccchHh-----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222111100 001111 13334455566665555554444444433344444433 3344689999
Q ss_pred HHHHHHHHhhCCCChH-------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 269 ILNFEKVRSIDPYIMT-------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+..|+++++.+|+++. ++..+|.++...|++++|+..+++++...|. +.++..+|.++.. |++++|+..++
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999865 4777888999999999999999999999999 9999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 419 (561)
+++...|.++.++..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999999999987 679999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc----------CChHHHHHHHHHHHhhCC
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVIE----------GRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~~ 483 (561)
+..+|.++... |++++|+..|+++++..|++.. .+..+|.++... |++++|+..++++++..|
T Consensus 381 ~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 381 PTFFAEILTDR-GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 99999999998 9999999999999998776543 356678899999 999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++ .++..+|.++...|++++|+.+|+++++++|+++.....+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 87 89999999999999999999999999999999988765544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.2e-37 Score=303.40 Aligned_cols=365 Identities=16% Similarity=0.151 Sum_probs=303.9
Q ss_pred HHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC
Q 008550 128 IVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (561)
Q Consensus 128 ~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (561)
...+.. +...|.++..++.+|..+...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------------------------- 66 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR------------------------- 66 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------
Confidence 333444 455688888899999999999999999999999999888887777666
Q ss_pred CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---
Q 008550 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM--- 283 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 283 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 67 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 131 (450)
T 2y4t_A 67 ---------------ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEK 131 (450)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ---------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Confidence 78888889999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHH------------HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 284 TYMDEY------------AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 284 ~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
.++..+ |.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..|++++..+|.++
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 666555 5668889999999999999999999999999999999988 999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQGL------------VHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
.++..+|.++...|++++|+..|++++...|++. .+..+ |.++...|++++|+..|++++...|+++
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999999999999988873 34333 8899999999999999999999999885
Q ss_pred H----HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHH
Q 008550 418 K----ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 418 ~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la 492 (561)
. .+..+|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++ .++..++
T Consensus 292 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4 778889999988 999999999999999999999999999999999999999999999999999877 7778888
Q ss_pred HH------------HHHcC-----CHHHHHHHHHH-HHhcCCccH----------HHHHHHHHHHHhcc
Q 008550 493 QV------------FAATN-----MLQEALSHYEA-ALRINSQNE----------AAKKGLERLEKQMK 533 (561)
Q Consensus 493 ~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~l~~l~~~~~ 533 (561)
.+ |..+| +.+++.+.|++ +++..|++. .....+...+..++
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 44 44555 56778889986 888888752 23445555555555
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-37 Score=305.67 Aligned_cols=447 Identities=13% Similarity=0.047 Sum_probs=350.7
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+.++..+..++..|+|+.|+......+...+ ...+++.+|.+++..|++++|+..|+++++.+|.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 73 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE---------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS---- 73 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH----
Confidence 3567889999999999999999999998742 256899999999999999999999999999987544
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHH---hcCCh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYR---NSRHN 157 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~---~~~~~ 157 (561)
.+++.+|.++...|++++|+..++++ ...|.+............ ..+..
T Consensus 74 ---------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (514)
T 2gw1_A 74 ---------------------------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126 (514)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999985 333433333222222222 22233
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHH--HHHcCCcccHhHHhhccccccCC-CCCCCCChhhHHHHHHHHHHHHH---ccCH
Q 008550 158 RGAVACYKECLRHCPFFIEAITAL--AELGATPKDIISLFAQTPNRSGR-APFDHLDSSRWLHRYVEAQCCIA---SNDY 231 (561)
Q Consensus 158 ~~A~~~~~~~l~~~p~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~---~~~~ 231 (561)
.+++..+..+... |......... ....................... .......+......+..|.+++. .|++
T Consensus 127 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 127 KEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp TTC----------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 3333333222111 1111000000 00000000000000000000000 00001112334445566887776 8999
Q ss_pred HHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 232 KGGLELFAELLQ-----R--F-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 232 ~~A~~~~~~~~~-----~--~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++|+..|+++++ . . |.++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence 999999999999 5 4 445788999999999999999999999999999999 999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHhh---hcCChHHHHHHHHHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK------ALKLVGDVHAS---NASGREKAKKFYESALR 446 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~~~~~~~A~~~~~~a~~ 446 (561)
++..|.+ .++..+|.++...|++++|+..+++++...|+++. ++..+|.++.. . |++++|+..+++++.
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASK 443 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHH
Confidence 9999987 67999999999999999999999999999998855 99999999999 8 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHH
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKL 491 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l 491 (561)
.+|+++.++..+|.++...|++++|+..++++++..|++ .++..+
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999999999999999999999987 454444
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.4e-37 Score=309.65 Aligned_cols=432 Identities=13% Similarity=0.052 Sum_probs=341.6
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..+..++..|+|+.|+.....++...+. ...+++.+|.+++..|++++|+..|+++++.+|.++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 93 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----- 93 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH-----
Confidence 4677889999999999999999999987432 346899999999999999999999999999987544
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+++.+|.++...|++++|+..++.+...|.....+ ...+...+...+|+.
T Consensus 94 --------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~ 144 (537)
T 3fp2_A 94 --------------------------KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS---IEPMLERNLNKQAMK 144 (537)
T ss_dssp --------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHH
Confidence 579999999999999999999998665555444333 224445566788999
Q ss_pred HHHHHHhcCCCcH--------HHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH-----HHHHHHHHcc
Q 008550 163 CYKECLRHCPFFI--------EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY-----VEAQCCIASN 229 (561)
Q Consensus 163 ~~~~~l~~~p~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~a~~~~~~~ 229 (561)
.+++++...|... .....+ ...+....+..........+ .....+.... ..+......|
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 145 VLNENLSKDEGRGSQVLPSNTSLASFF-----GIFDSHLEVSSVNTSSNYDT---AYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHCC-------CCCCCHHHHHHHH-----HTSCHHHHHHTSCCCCSSCS---SHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHhCccccccccchHhHHHHHH-----HhcChHHHHHHHhhcccccc---HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 9999988765332 111111 11122222222211111100 0000000000 0133334457
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 230 DYKGGLELFAELLQRFPNNIH-------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|. +.++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 899999999999999999865 5777889999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
+..+++++...|+++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHhhhc---------CChHHHHHHHHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA------LKLVGDVHASNA---------SGREKAKKFYESAL 445 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~---------~~~~~A~~~~~~a~ 445 (561)
++ .++..+|.++...|++++|+..+++++...|++... +..+|.++.... |++++|+..|++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 87 679999999999999999999999999988765433 455566666521 88999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+.+|+++.++..+|.++...|++++|+..|+++++..|+.
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999976
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.9e-36 Score=295.60 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=293.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHH------------HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDPSRP---EVFVAL------------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
|+..|++++...|.++ .++..+ |.++.. |++++|+..+++++...|.++.++..+|.++...|+
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 9999999999999988 776665 555888 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHhhhcC
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV------------GDVHASNAS 432 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------~~~~~~~~~ 432 (561)
+++|+..|+++++..|.+ .++..+|.++...|++++|+..+++++...|++...+..+ |.++... |
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 271 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-G 271 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 999999999999999887 6799999999999999999999999999999999988776 9999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 507 (561)
++++|+.+|+++++..|+++. ++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999854 78889999999999999999999999999976 8999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Q 008550 508 YEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 508 ~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
|+++++++|+++.++..++.+...
T Consensus 352 ~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 352 YETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHHH
Confidence 999999999999999999976554
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1e-35 Score=283.27 Aligned_cols=315 Identities=17% Similarity=0.228 Sum_probs=297.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 45559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDP---SRPEVFVAL------------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
++++|+..++++++..| +++.++..+ |.++.. |++++|+..+++++...|.++.++..+|.++.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999 888888777 677888 99999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH------------HHHHHh
Q 008550 362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL------------VGDVHA 428 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~------------l~~~~~ 428 (561)
..|++++|+..+++++...|.+ .++..+|.++...|++++|+..++++++..|+++.++.. +|.++.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 679999999999999999999999999999999887653 377889
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHH
Q 008550 429 SNASGREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~ 503 (561)
.. |++++|+..++++++..|+++. ++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++
T Consensus 246 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 246 RD-GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 88 9999999999999999999874 46679999999999999999999999999976 899999999999999999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
|..+|+++++++|+++.++..+..+...++
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999987664
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.2e-35 Score=279.95 Aligned_cols=319 Identities=16% Similarity=0.143 Sum_probs=258.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+++.++.+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------------------- 43 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------------------- 43 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH--------------------------------------
Confidence 356677788888888888888888888888888777666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CChHHHHHH-------
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTYMDEY------- 289 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l------- 289 (561)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+| .++.++..+
T Consensus 44 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 44 --ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp --HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 77777778888888888888888888888888888888888888888888888888888 776666665
Q ss_pred -----HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 290 -----AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 290 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 6788888888888888888888888888888888888888 8888888888888888888888888888888888
Q ss_pred CChhHHHHHHHHhHHhCCChH-HH------------HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHH
Q 008550 364 KRPEAAVIAFRGAQELRPDLR-SY------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK----ALKLVGDV 426 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~-~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~ 426 (561)
|++++|+..++++++..|+.. ++ ..+|.++...|++++|+..+++++...|+++. ++..+|.+
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 888888888888888887762 22 24477888889999999999999988888774 35568888
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN 499 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g 499 (561)
+... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++ .++..++.+....+
T Consensus 282 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 282 FSKD-EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8887 899999999999999889888889999999999999999999999999888876 67777777766544
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=289.07 Aligned_cols=383 Identities=15% Similarity=0.064 Sum_probs=287.8
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
.+..+..+..+|.+++.+|+|++|+..|++++++.+...
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~----------------------------------------- 85 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH----------------------------------------- 85 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-----------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence 344556777888888888888888888888887642111
Q ss_pred HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--------cHHHHHHHHHHcCCccc
Q 008550 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPF--------FIEAITALAELGATPKD 190 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~ 190 (561)
.....|....++..+|.+|..+|++++|+..|++++...|. ...++.
T Consensus 86 --------------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~----------- 140 (472)
T 4g1t_A 86 --------------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC----------- 140 (472)
T ss_dssp --------------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH-----------
T ss_pred --------------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH-----------
Confidence 00123455567778888888888999998888888875432 122221
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCCH
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI--ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI---IGKN 265 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~ 265 (561)
..|.++. ..++|++|+.+|+++++.+|+++.++..++.++.. .++.
T Consensus 141 -----------------------------~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 141 -----------------------------EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp -----------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred -----------------------------HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence 1244443 45679999999999999999999999999988654 5777
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
++|+..++++++++|.++.++..+|..+.. .+++++|..++++++...|..+.++..+|.++.. |++++|+..++
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 899999999999999999999888876654 4678899999999999999999999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhc-------------------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSM-------------------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
++++..|+++.++..+|.+|... +.+++|+..++++++.+|.. .++..+|.++...|+++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 99999999999999999988643 34678999999999999998 56999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHH---HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAK---ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+|+..|++++...|++.. ++..+|.+.....|++++|+..|++++++.|++...... ...+...+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~ 421 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHH
Confidence 999999999999887644 456667655433499999999999999999998654322 2445677888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++..+|++ .++..+|.+|...|++++|+++|++++++.|.+|.+...++
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 89999987 89999999999999999999999999999999999877664
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=264.10 Aligned_cols=295 Identities=16% Similarity=0.142 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
....+...|+++.++..+|..+...|++++|+..|+++++.+|.+...+..++.++...|++++|+..++++++..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 33555667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-c-CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 318 EVFVALSVLWER-K-DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 318 ~~~~~l~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
.++..+|.++.. | ++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999 8 99999999999999999999999999999999999999999999999999986 67888999999
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHc
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE---------PGYLGAALALAELHVIE 465 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---------p~~~~~~~~la~~~~~~ 465 (561)
..|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.. |..+.++..+|.++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998 99999999999999976 66678999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hcc
Q 008550 466 GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK-QMK 533 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~-~~~ 533 (561)
|++++|+..++++++..|++ .++..+|.++...|++++|..+|+++++++|+++.++..++.+.. ..+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 99999999999999999887 899999999999999999999999999999999999999999874 443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=261.54 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=249.6
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChh
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (561)
+...+.++..++.+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------------- 62 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH-------------------------------- 62 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH--------------------------------
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH--------------------------------
Confidence 334467778888999999999999999999999999998877666544
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|+++++.+|.++.++..+|.+
T Consensus 63 --------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 63 --------IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp --------HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred --------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 677788899999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
+...|++++|+..+++++...|.+..++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999888888889998888 999999999999999999988889999999999999999999
Q ss_pred HHHHhHHhC---------CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 372 AFRGAQELR---------PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 372 ~~~~~~~~~---------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
.+++++... |.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+.+|
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 999888875 332 56788888888888888888888888888888888888888888887 8888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-HHcCCh
Q 008550 442 ESALRLEPGYLGAALALAELH-VIEGRN 468 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~-~~~g~~ 468 (561)
+++++.+|+++.++..++.++ ...|+.
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888877 444544
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=273.75 Aligned_cols=401 Identities=13% Similarity=-0.041 Sum_probs=251.8
Q ss_pred HHHHHHhhhhhhhHHhHHHHHHHhccCCCC-CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 7 QITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 7 ~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
.+..+...|+|++|+......+.+...... ...+..+.++..+|.+|+..|+|++|+..|++++.+.|..+...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~----- 131 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY----- 131 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-----
Confidence 345567788999999888877765332211 12334456788899999999999999999999998875443210
Q ss_pred hhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc--CCHHHHHHHHhc-CCCcccchhHHHHHHHHHHh---cCChhh
Q 008550 86 SSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL--GETKAAIVEMEG-IPSKARNLQMSLLMAKLYRN---SRHNRG 159 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~---~~~~~~ 159 (561)
......++..+|.++... +++++|+..|++ +...|.++.++..+|.++.. .++.++
T Consensus 132 ------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 132 ------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred ------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 112234555555555443 346666666666 33446666666666655433 345566
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
|+..|+++++.+|.+..++..++... +.+....|++++|+.+++
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~a~~~~~ 237 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKL------------------------------------HKMREEGEEEGEGEKLVE 237 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHH------------------------------------HHCC------CHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHH------------------------------------HHHHhhhhHHHHHHHHHH
Confidence 66666666666666665554442111 333444556666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
+++..+|.++.++..+|.+|...|++++|+..++++++.+|+++.++..+|.++...+....+..
T Consensus 238 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~--------------- 302 (472)
T 4g1t_A 238 EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR--------------- 302 (472)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------
Confidence 66666666666666666666666666666666666666666666666666666543321111100
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH----HHHHHHHH-H
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHS-Y 393 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~ 393 (561)
....+..... +.++.|+..+++++..+|.+..++..+|.++...|++++|+..|+++++..|++. .+..+|.+ +
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0111111222 5678899999999999999999999999999999999999999999999988762 35566654 4
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
...|++++|+..|++++++.|++.... +....+...+++++..+|+++.++..+|.++...|++++|++
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~-----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKE-----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHH-----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999875432 334556677888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCh-HHHHHHH
Q 008550 474 LLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~la 492 (561)
+|+++++..|.. .+...+|
T Consensus 452 ~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --------------------
T ss_pred HHHHHHhcCCCCCcHhhcCC
Confidence 999999988755 4454444
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1e-32 Score=263.66 Aligned_cols=289 Identities=18% Similarity=0.112 Sum_probs=229.5
Q ss_pred HHHHccCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 224 CCIASNDYKGGLE-LFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 224 ~~~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4445577777777 7777777766653 4577778888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH----------------HHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----------------MKGNLLL 361 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~ 361 (561)
+++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 8888888888888888888888888887777 8888888888888887777766554 456665
Q ss_pred hcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
..|++++|+..++++++..|. . .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 888899999999999988888 4 56888899999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------------HHHHHHHHHHHHcCCHHHHHH
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~ 506 (561)
..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+. .+|..+|.++..+|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999999999888899999999999999999999999998877643 688899999999999999998
Q ss_pred HHHHHHhc
Q 008550 507 HYEAALRI 514 (561)
Q Consensus 507 ~~~~al~~ 514 (561)
+++++++.
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 88877654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3e-29 Score=248.41 Aligned_cols=390 Identities=14% Similarity=0.106 Sum_probs=312.5
Q ss_pred hHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 42 KAENLIILGDSLFR----DREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 42 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
.+.+++.+|..|+. .+++++|+.+|+++.+. .+..+.+.+|.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~~ 84 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---------------------------------GYTPAEYVLGLR 84 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHH
Confidence 45688889998888 88999999999998875 234578889999
Q ss_pred HHh----cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc
Q 008550 118 HFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEAITALAELGATPK 189 (561)
Q Consensus 118 ~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 189 (561)
|.. .+++++|+.++++... ..++.+++.+|.+|.. .+++++|+..|+++... +++.++..+
T Consensus 85 y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------- 153 (490)
T 2xm6_A 85 YMNGEGVPQDYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM-------- 153 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH--------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH--------
Confidence 988 8899999998888532 3467888889999888 78899999999998765 456666665
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI---- 261 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---- 261 (561)
|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 154 --------------------------------g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 154 --------------------------------GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp --------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred --------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCC
Confidence 555555 67899999999998875 578889999999988
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-----cCH
Q 008550 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDE 332 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~ 332 (561)
.+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++.. +++
T Consensus 200 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCH
Confidence 88999999999998875 467888889988886 78899999999988875 567888888888764 688
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhc-----CChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC---CHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSM-----KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS---KVKEALY 404 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 404 (561)
++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+.. ...+++.+|.+|...| ++++|+.
T Consensus 276 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 276 LKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 8999999998765 5678888899998887 89999999999988763 3367888888888766 7889999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLE 476 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~ 476 (561)
+|+++++. .++.+++.+|.++.. . +++++|+.+|+++.+.. ++.++..+|.+|.. .+++++|+.+|+
T Consensus 353 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 353 WFRKAAAK--GEKAAQFNLGNALLQGKGVK-KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998876 578899999999887 6 88899999999988753 68888899999988 889999999999
Q ss_pred HHHhhCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 477 RYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 477 ~~~~~~~~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
++++..|+ + .+...+|.++.. +...|.+..++.++..|++..+..
T Consensus 428 ~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~ 476 (490)
T 2xm6_A 428 TASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWARM 476 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988853 3 677777776654 345556566666666676665543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=7.7e-32 Score=257.50 Aligned_cols=306 Identities=14% Similarity=0.029 Sum_probs=214.0
Q ss_pred HHHhcCCHHHHHH-HHhcC-CCcccc----hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc
Q 008550 117 CHFALGETKAAIV-EMEGI-PSKARN----LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190 (561)
Q Consensus 117 ~~~~~~~~~~A~~-~l~~~-~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 190 (561)
++...|++++|+. .+++. ...|.+ ...++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 104 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL--------- 104 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH---------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 5555566666665 55542 222222 34455666666666666666666666666666555555444
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL 270 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 270 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 105 -------------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 105 -------------------------------GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp -------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC--
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER-- 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-- 348 (561)
.+++++...|.+...+..++.... .......+..++.++..|++++|+..+++++...|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 154 ILRDWLRYTPAYAHLVTPAEEGAG------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHhh------------------hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 666666666655544433221100 000111222566666339999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
++.++..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999987 67999999999999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 428 ASNASGREKAKKFYESALRLEPGY-----------LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
... |++++|+..|+++++..|++ ..++..+|.++...|++++|..++.++++.
T Consensus 296 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 296 INL-GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHH-TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHC-CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 998 99999999999999998887 889999999999999999999998876654
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3.9e-29 Score=247.60 Aligned_cols=366 Identities=13% Similarity=0.058 Sum_probs=323.8
Q ss_pred ChHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCcHHH
Q 008550 106 NENEVKYKIASCHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEA 177 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~ 177 (561)
.+.++.+.+|.+|.. .+++++|+..+++.... .++.+++.+|.+|.. .+++++|+.+|+++... +++.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 445789999999999 89999999999985432 678899999999999 99999999999999875 46666
Q ss_pred HHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 008550 178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILL 253 (561)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 253 (561)
+..| |.++.. .+++++|+.+|+++.+. +++.+++
T Consensus 114 ~~~L----------------------------------------g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 114 QQNL----------------------------------------GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp HHHH----------------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHH----------------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 6665 666766 78999999999999775 5799999
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 254 EMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 254 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 227 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999998 88999999999999886 578999999999998 89999999999999875 57889999999
Q ss_pred HHHh-----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhc
Q 008550 326 LWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF 396 (561)
Q Consensus 326 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (561)
++.. +++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++.+.. ...+++.+|.+|...
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Confidence 9973 7999999999999875 568899999999998 899999999999998652 346789999999988
Q ss_pred -----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 397 -----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLEPGYLGAALALAELHVI---- 464 (561)
Q Consensus 397 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 464 (561)
+++++|+.+|+++.+. .++.+++.+|.++... | ++++|+.+|+++++. .++.+++.+|.++..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL-GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred CCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999886 5689999999999985 5 789999999999987 578999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRIN---SQNEAAKKGLERLE 529 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~l~ 529 (561)
.+++++|+.+|+++.+.. +..++..+|.+|.. .+++++|..+|+++++.+ |+++.+...++.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 899999999999999864 45899999999999 899999999999999999 45888887776653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.98 E-value=6.1e-31 Score=250.86 Aligned_cols=263 Identities=16% Similarity=0.090 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 44888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHH----------HHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHHh
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMK----------GNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQ 395 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~ 395 (561)
|++++|+..+++++...|.+...+..+ |.++...|++++|+..|++++...|. + .++..+|.++..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 888888888888888888766665544 88999999999999999999999887 4 568899999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
.|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 476 ERYLKDWAD-------------DSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 476 ~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+++++..|+ ..+|..++.++...|+.+.|.....+.+.
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999988765 37889999999999999988887766443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.98 E-value=1.3e-28 Score=246.50 Aligned_cols=413 Identities=9% Similarity=0.016 Sum_probs=320.6
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
...+|..++.. .+.|++++|...|+++++.+|.++ .++..++..+.+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~-------------------------------~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG-------------------------------RFWKLYIEAEIKA 59 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH-------------------------------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH-------------------------------HHHHHHHHHHHhc
Confidence 45578888874 778999999999999999887544 5788899999999
Q ss_pred CCHHHHHHHHhcC-CCcccchhHHHHHHHH-HHhcCChhhHHH----HHHHHHhc---CCCcHHHHHHHHHHcCCcccHh
Q 008550 122 GETKAAIVEMEGI-PSKARNLQMSLLMAKL-YRNSRHNRGAVA----CYKECLRH---CPFFIEAITALAELGATPKDII 192 (561)
Q Consensus 122 ~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~-~~~~~~~~~A~~----~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~ 192 (561)
|++++|..+|++. ...| +...|..++.. ....|++++|.. .|++++.. +|.+...|..++.+.......
T Consensus 60 ~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~- 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV- 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-
T ss_pred CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-
Confidence 9999999999984 4446 67788877754 445688887766 77777654 455666666554332110000
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-----------
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVD----------- 259 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~----------- 259 (561)
. .+...|+++.|+.+|+++++ .|.+. ..|...+...
T Consensus 138 --------------------~----------~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 138 --------------------G----------SYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp --------------------S----------STTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred --------------------c----------cHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 0 01135889999999999998 56543 3333332221
Q ss_pred --HHhCCHHHHHHHHHH------HHhh-----CCCC-------hHHHHHHHHHHHhc----CCH----hHHHHHHHHHHh
Q 008550 260 --AIIGKNDEAILNFEK------VRSI-----DPYI-------MTYMDEYAMLLKVK----CDY----SKLSKLVHDLLS 311 (561)
Q Consensus 260 --~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~ 311 (561)
...+++..|...+.. .++. .|.. ...|..+....... ++. ..++..|++++.
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 124567778776665 3332 2322 23444443332221 222 478899999999
Q ss_pred cCCCCHHHHHHHHHHHH--------hcCHh-------HHHHHHHHHHh-ccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 312 IDPSRPEVFVALSVLWE--------RKDER-------GALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~--------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
..|.++.+|..+|.++. .|+++ +|+..|+++++ ..|++..+|..+|.++...|++++|...|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999887 37876 99999999997 8999999999999999999999999999999
Q ss_pred hHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 376 AQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 376 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+++..|.+ .+|..++.++.+.|++++|...|+++++..|.....+...+.+. ... |++++|..+|+++++..|+++
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~-~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTCH
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHCCCCH
Confidence 99999986 36999999999999999999999999999888877777766653 345 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
.+|..++.++...|+.++|..+|++++...|.+ .+|...+......|+.+.+..++.++++..|++..
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 999999999999999999999999999986532 48888899999999999999999999999996543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=7e-30 Score=243.48 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=239.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHh-cCHhHHHHHHHHHHhccCC--ChhHHHHHHHHHHhcCC
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVAL----------SVLWER-KDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 365 (561)
+++|+..++++++..|+++.++..+ |.++.. |++++|+.++++++...|. ++.++..+|.++...|+
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999877666555 888888 9999999999999999999 89999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
+++|+..|+++++..|++ .++..+|.++...|++++|+..|+++++..|+++.++..+|.++... |++++|+.+|+++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 307 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 999999999999999987 67999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 445 LRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 445 ~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+++.|+ +..++..++.++...|+.+.+.....+.+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999877 367899999999999999999888776443
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=7.6e-28 Score=240.81 Aligned_cols=383 Identities=10% Similarity=0.018 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcC
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (561)
..++..++.. ...|++++|...++++ ...|.+..+|..++..+...|++++|+..|++++...| +...|..++.
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~--- 87 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS--- 87 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH---
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH---
Confidence 4578888874 7899999999999995 55699999999999999999999999999999999999 5667766532
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAKVD 259 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~ 259 (561)
......|++++|.+ .|++++.. +|.+..+|...+...
T Consensus 88 ------------------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~ 131 (530)
T 2ooe_A 88 ------------------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFL 131 (530)
T ss_dssp ------------------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 12223466666554 77777764 567788998888877
Q ss_pred HH---------hCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHH-------------HhcCCHhHHHHHHHH------H
Q 008550 260 AI---------IGKNDEAILNFEKVRSIDPYIM--TYMDEYAMLL-------------KVKCDYSKLSKLVHD------L 309 (561)
Q Consensus 260 ~~---------~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~-------------~~~~~~~~A~~~~~~------~ 309 (561)
.. .|+++.|..+|+++++ .|... ..|..+.... ...+++..|...+.. .
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 132 KGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 65 7899999999999999 56553 3333333221 134567778777665 4
Q ss_pred Hhc-----CCCC-------HHHHHHHHHHHHh-----cCH----hHHHHHHHHHHhccCCChhHHHHHHHHHHh------
Q 008550 310 LSI-----DPSR-------PEVFVALSVLWER-----KDE----RGALSYAEKSIRIDERHIPGYIMKGNLLLS------ 362 (561)
Q Consensus 310 ~~~-----~~~~-------~~~~~~l~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 362 (561)
++. .|.. ...|......... ++. ..++..|++++...|.++.+|+.+|..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 432 3332 2344444332221 122 478899999999999999999999999986
Q ss_pred -cCChh-------HHHHHHHHhHH-hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhhc
Q 008550 363 -MKRPE-------AAVIAFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-KALKLVGDVHASNA 431 (561)
Q Consensus 363 -~~~~~-------~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~ 431 (561)
.|+++ +|+..|+++++ ..|++ ..|..++.++...|++++|...|+++++..|.++ .+|..++.++...
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~- 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA- 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-
Confidence 79987 99999999997 78887 6799999999999999999999999999999986 6999999999888
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
|++++|+..|+++++..|.....+...+.+ +...|++++|..+|+++++..|++ .+|..++.++...|++++|...|+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999999999998887777777766 346899999999999999999976 899999999999999999999999
Q ss_pred HHHhcCCccHH----HHHHHHHHHHhcc
Q 008550 510 AALRINSQNEA----AKKGLERLEKQMK 533 (561)
Q Consensus 510 ~al~~~p~~~~----~~~~l~~l~~~~~ 533 (561)
+++...|.++. +|.....+....|
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99998766554 8877777777665
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.5e-29 Score=237.44 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=180.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 34558888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHH-HH-HHHhcCChhHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMK-GN-LLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~~~~~~ 375 (561)
++++|+..+++++...|.+...+..+.... |.... ...+ +. ++...|++++|+..+++
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQAD-------------------VDIDD-LNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC----------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHH-------------------HHHHH-HHHHHHhHHHHHcccHHHHHHHHHH
Confidence 888888888888888888776665551110 00000 0011 22 34445555555555555
Q ss_pred hHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+++..|.+ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++..|+++.+
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~ 242 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDAYNRALDINPGYVRV 242 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHH
Confidence 55555544 34555555555555555555555555555565666666666666655 66666666666666666666666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC------------h-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWAD------------D-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+..+|.++...|++++|+..+++++...|. . .++..+|.++...|++++|...++++++..|+
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 666666666666666666666666665555 3 55666666666666666666666665555443
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.7e-29 Score=236.91 Aligned_cols=282 Identities=12% Similarity=0.011 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 008550 174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILL 253 (561)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 253 (561)
....+..++..+...++..++...+.+.....|. .....+..|.++...|++++|+..++++++.+|+++.++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 3456789999999999999999999888876543 3334456699999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH-HH-HHHh-c
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SV-LWER-K 330 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~-~~~~-~ 330 (561)
.+|.++...|++++|+..++++++..|.+...+..+.... |.... ...+ +. ++.. |
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDIDD-LNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHHH-HHHHHHhHHHHHcc
Confidence 9999999999999999999999999999887766552111 11111 1233 33 3555 8
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA 409 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (561)
++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..++++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888876 56888888888888999999999988
Q ss_pred HHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++..|+++.++..+|.++... |++++|+..+++++...|. ++.++..+|.++...|++++|...+++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888888888899999998888 9999999999999988888 678888899999999999999988887
Q ss_pred HHhhCC
Q 008550 478 YLKDWA 483 (561)
Q Consensus 478 ~~~~~~ 483 (561)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 776554
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=6.7e-30 Score=240.58 Aligned_cols=259 Identities=12% Similarity=0.045 Sum_probs=151.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCHHHH
Q 008550 242 LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+..+|+++.++..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|++++.++|+++.+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 445566666677777777777777777777777777777666666666666666664 6666666666666666666666
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHh-cC
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FS 397 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~ 397 (561)
+.+|.++.. |++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|++ .+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 666666666 666666666666666666666666666666555555555555555555555554 345555555555 33
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG--RNGDAVSLL 475 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~ 475 (561)
..++|+ .+.++.+|++++.++|++..+|..++.++...| ++++|++.+
T Consensus 250 ~~~eA~------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 250 YNDRAV------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp SCSHHH------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred cchHHH------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 324441 000024444555555555445555554444444 344555544
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCCccHHHHHHHHHHHHh
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATN--------M-LQEALSHYEAA-LRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~l~~~ 531 (561)
.++ +..|++ .++..+|.+|..+| + +++|+++|+++ ++++|.....|..++.....
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 444 444433 44455555555542 2 46777777777 77777777777777765543
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.2e-29 Score=238.91 Aligned_cols=253 Identities=11% Similarity=-0.014 Sum_probs=206.2
Q ss_pred CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 008550 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDE 288 (561)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 288 (561)
.++.....++..|.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++..+|..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3455566677789999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh-cCCh
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRP 366 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 366 (561)
+|.++...|++++|+..|++++.++|++..+|+.+|.++.. |++++|+.+|+++++++|.+..+|..+|.++.. .|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999999 5655
Q ss_pred hHHH-----HHHHHhHHhCCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC------
Q 008550 367 EAAV-----IAFRGAQELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS------ 432 (561)
Q Consensus 367 ~~A~-----~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------ 432 (561)
++|+ ..|++++.++|++ .+|+.++.++...| ++++|+..+.++ +..|+++.++..+|.++... |
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~-~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM-LENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH-HHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH-hcccccc
Confidence 8874 6666666666665 34666666666655 456666666555 55666666666666666554 3
Q ss_pred ---ChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Q 008550 433 ---GREKAKKFYESA-LRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 433 ---~~~~A~~~~~~a-~~~~p~~~~~~~~la~~~~~ 464 (561)
.+++|+.+|+++ ++++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 135566666666 56666665566555554443
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=8.5e-28 Score=218.98 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh----hHHHHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI----PGYIMKGN 358 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~ 358 (561)
+.++.+|.++...|++++|+..++++++.+|.++.++..+|.++.. |++++|+..+++++. .|.++ .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555 555555555555555 22222 23666677
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHhhhcCChHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG-DVHASNASGREK 436 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~ 436 (561)
++...|++++|+..|+++++.+|.. .++..+|.++...|++++|+..+++++..+|.++.++..+| .++. . +++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~-~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-N-KEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-T-TCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-H-HHHHH
Confidence 7777777777777777777776665 45777777777777777777777777777777777787888 4444 3 67888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CCh------HHHHHHHHHHHHcCCHHHH
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGR---NGDAVSLLERYLKDW---ADD------SLHVKLAQVFAATNMLQEA 504 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~---~~~------~~~~~la~~~~~~g~~~~A 504 (561)
|+..|+++++.+|+++.++..+|.++...|+ +++|+..++++++.. |+. .++..+|.++...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888888888888888877 777888888887765 431 5788999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 505 LSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 505 ~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+.+|+++++++|+++.++..+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999999999988876554
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=5e-27 Score=214.22 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=233.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
....+..|+|..|+..++++...+|++ .+....++++|...|+++.|+..++. .+|....++..++..+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 677788999999999999887777776 46778889999999999999988865 35666778888999999999999
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
+|++.+++++.. +|+++.+++.+|.++.. |++++|+..+++ |.++.++..+|.++...|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998875 69999999999999999 999999999988 8889999999999999999999999999999
Q ss_pred HhCCChH-HHHH--HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 378 ELRPDLR-SYQG--LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 378 ~~~~~~~-~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+.+|+.. .... +..++...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHH
Confidence 9998863 2222 224445668999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008550 455 ALALAELHVIEGRNGD-AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
+.++|.++...|++.+ +..+++++++..|++.... .+..+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence 9999999999999976 5688899999999873322 3455555666665554
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.5e-27 Score=215.90 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=194.1
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+++.++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------------------- 43 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------------------- 43 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------------
Confidence 346677888888888888888888888888888877666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
|.++...|++++|+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..
T Consensus 44 --~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 44 --AVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred --HHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7778888888888888888887 3333 44578888888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHHHHHHHH-HHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVI 371 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 371 (561)
.|++++|+..++++++..|.++.++..+| .++..+++++|+..++++++..|.++.++..+|.++...|+ +++|+.
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 88888888888888888888888888888 66666888888888888888888888888888888888888 788888
Q ss_pred HHHHhHHhC---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 372 AFRGAQELR---PDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 372 ~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.++++++.. |+. .++..+|.++...|++++|+.+++++++.+|+++.++..++.+...
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 888887764 431 3466777777777777777777777777777777777666665443
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.96 E-value=2.7e-27 Score=230.46 Aligned_cols=376 Identities=14% Similarity=0.061 Sum_probs=271.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH--
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET-- 124 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 124 (561)
..+|..+++.|++++|+..|+++.+.. ++ ++++.+|.++...|++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~-------------------------------~A~~~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YS-------------------------------EAQVGLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CC-------------------------------TGGGTCC-----------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CH-------------------------------HHHHHHHHHHHccCCCCC
Confidence 568999999999999999999997763 22 3456677888888888
Q ss_pred -HHHHHHHhcCCCcccchhHHHHHHHHHHhcC-----ChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 125 -KAAIVEMEGIPSKARNLQMSLLMAKLYRNSR-----HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 125 -~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
++|+..+++.... ++.+++.+|.++...+ ++++|+..|+++++..+ +.++..|
T Consensus 54 ~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~L----------------- 112 (452)
T 3e4b_A 54 IKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPL----------------- 112 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHH-----------------
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH-----------------
Confidence 9999999986544 7889999999776665 78999999999998544 3466666
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH----
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK---GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN---- 271 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~---- 271 (561)
|.++...+... ++...+.++.. +.++.+++.+|.+|...+.++++...
T Consensus 113 -----------------------g~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 113 -----------------------AMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp -----------------------HHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred -----------------------HHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 44444444333 34444444433 34577899999999999965555444
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CHhHHHHHHHHHH
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-----DERGALSYAEKSI 343 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~A~~~~~~~~ 343 (561)
++.+... ++.+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|..| ++++|+.+|+++.
T Consensus 168 ~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 168 CKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4444433 4459999999999999 999999999999999999999889999999764 8899999999998
Q ss_pred hccCCChhHHHHHHHH-H--HhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHCCC
Q 008550 344 RIDERHIPGYIMKGNL-L--LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS-----KVKEALYAAREAMKAMPQ 415 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~p~ 415 (561)
|.++.+++.+|.+ + ...+++++|+.+|+++.+.. ...+++.+|.+|. .| ++++|+.+|+++. |.
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 8899999999998 4 57899999999999998654 4477899999998 55 9999999999998 88
Q ss_pred CHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChHHH
Q 008550 416 SAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
++.+++.+|.+|..- ..++++|+.+|+++.+ +.++.+.+.+|.+|.. ..++.+|..+|+++.+..+. ...
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~ 393 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAN 393 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHH
Confidence 999999999998861 1489999999999987 4568899999999985 45899999999999886543 333
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q 008550 489 VKLAQVFAAT--NMLQEALSHYEAALRIN 515 (561)
Q Consensus 489 ~~la~~~~~~--g~~~~A~~~~~~al~~~ 515 (561)
..++.+...+ ++..+|....++..+..
T Consensus 394 ~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 394 DLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4444443322 34555666665554443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=1.8e-26 Score=210.52 Aligned_cols=276 Identities=9% Similarity=0.004 Sum_probs=216.9
Q ss_pred HHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHH
Q 008550 50 GDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIV 129 (561)
Q Consensus 50 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 129 (561)
.+..|..|+|..|+..+++....+|.+ ..+..+.++++|+..|+++.|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~------------------------------~~e~~~~l~r~yi~~g~~~~al~ 55 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPER------------------------------DVERDVFLYRAYLAQRKYGVVLD 55 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchh------------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678899999999988766654321 13466778899999999999998
Q ss_pred HHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 130 EMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 130 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
.++.. .|....++..++..+...|++++|+..+++++.. +|+++.++..+
T Consensus 56 ~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l-------------------------- 107 (291)
T 3mkr_A 56 EIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA-------------------------- 107 (291)
T ss_dssp HSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH--------------------------
T ss_pred Hhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH--------------------------
Confidence 88763 4556777888899999999999999999998875 58888777666
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 287 (561)
|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..|+++++.+|++.....
T Consensus 108 --------------a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l 168 (291)
T 3mkr_A 108 --------------ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL 168 (291)
T ss_dssp --------------HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------------HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHH
Confidence 8888888999999998887 888999999999999999999999999999999888764443
Q ss_pred HHH--HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 288 EYA--MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 288 ~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
..+ .++...|++++|+.+|+++++..|+++.++..+|.++.. |++++|+..+++++..+|+++.++.++|.++...|
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333 334455888888888888888888888888888888888 88888888888888888888888888888888888
Q ss_pred ChhH-HHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 365 RPEA-AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 365 ~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
++.+ +..+++++++.+|++.... ....+.+.++++..-
T Consensus 249 ~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHH
Confidence 8876 4678888888888875432 233444445554443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-27 Score=211.56 Aligned_cols=236 Identities=10% Similarity=0.030 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC-------hhHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-------IPGYIM 355 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~~~~~~ 355 (561)
..+..+|.++...|++++|+.+++++++.. .++.++..+|.++.. |++++|+..+++++...|.+ +.++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344444444444444444444444444444 444455555555555 55555555555555554444 456666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChH
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (561)
+|.++...|++++|+..+++++...|.. .++...|++++|+..+++++..+|.++.++..+|.++... |+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHH
Confidence 6666666677777777777766666652 3455566677777777777777777777777788777777 7888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++...|++++|..+|++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888887777777777778888888888888888888887777765 67778888888888888888888888888
Q ss_pred C------CccHHHHHHHHHH
Q 008550 515 N------SQNEAAKKGLERL 528 (561)
Q Consensus 515 ~------p~~~~~~~~l~~l 528 (561)
+ |++..++..+..+
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHT
T ss_pred ChhhcCCCchHHHHHHHHHh
Confidence 7 7777777666543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=9.9e-27 Score=203.10 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=150.3
Q ss_pred ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHH
Q 008550 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (561)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (561)
|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l------------------------------------ 45 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL------------------------------------ 45 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH------------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------------------
Confidence 55667888888888888888888888888888888888877766
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCChHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII-----------GKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++
T Consensus 46 ----g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 46 ----ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 77777888888888888888888888888888888888888 888888888888888888888888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
..+|.++...|++++|+..|+++++.+ +++.++..+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 888888888888888888888888877 777888888888877 888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHh
Q 008550 366 PEAAVIAFRGA 376 (561)
Q Consensus 366 ~~~A~~~~~~~ 376 (561)
+++|+..|+++
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88887777765
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=8.8e-27 Score=203.42 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL 360 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 360 (561)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. |++++|+..++++++.+|+++.++..+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444 4444444444444444444444444444444
Q ss_pred Hhc-----------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 008550 361 LSM-----------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (561)
Q Consensus 361 ~~~-----------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (561)
... |++++|+..|+++++.+|++ .++..+|.++...|++++|+..|+++++.+ +++.++..+|.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence 444 55555555555555555554 345555555555555555555555555555 55555555555555
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 429 SNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++
T Consensus 163 ~~-g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SM-GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55 5555555555555555555555555555555555555555555544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=207.93 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-------HHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------PEVFVA 322 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~ 322 (561)
..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|.. +.++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 444455555555555555555555555554 444555555555555555555555555555544443 455555
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
+|.++.. |++++|+.++++++...|. +.++...|++++|+..+++++..+|.. .++..+|.++...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 5555555 5555555555555555544 334455555666666666666655554 34666666666666666
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..+++++...|.++.++..+|.++... |++++|+.+++++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666666666665 6666666666666666666666666666666666666666666666666
Q ss_pred hC
Q 008550 481 DW 482 (561)
Q Consensus 481 ~~ 482 (561)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 66
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=4.9e-26 Score=221.59 Aligned_cols=355 Identities=14% Similarity=0.120 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 112 YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN---RGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 112 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
..+|..+.+.|++++|+..++++. .+.++.+++.+|.+|...|++ ++|+..|++++.. ++.++..+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa-~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L------- 75 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLA-ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL------- 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHTCCTGGGTCC-------------------------------CHHHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------
Confidence 458899999999999999999863 245778899999999999998 9999999999976 55556665
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 263 (561)
|.++... +++++|+.+|+++++.. ++.+++.+|.+|...+
T Consensus 76 ---------------------------------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 76 ---------------------------------GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------------HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred ---------------------------------HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 4433333 37899999999999854 4558999999999887
Q ss_pred CHHHH---HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH----HHHHHhcCCCCHHHHHHHHHHHHh-c---CH
Q 008550 264 KNDEA---ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL----VHDLLSIDPSRPEVFVALSVLWER-K---DE 332 (561)
Q Consensus 264 ~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~-~---~~ 332 (561)
...++ ...+.++.. +.++.+++.+|.++...+.++++... ++.+.. .++.+++.+|.++.. | ++
T Consensus 121 ~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccH
Confidence 65544 444444433 34578999999999999976665554 444433 345599999999998 8 99
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhc----CChhHHHHHHHHhHHhCCCh-HHHHHHHHH-H--HhcCCHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPEAAVIAFRGAQELRPDL-RSYQGLVHS-Y--LQFSKVKEALY 404 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~--~~~~~~~~A~~ 404 (561)
++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.+ .+++.+|.+ + ...+++++|+.
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 9999999999999999999889999999776 79999999999998 554 779999998 5 57899999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLL 475 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 475 (561)
+|+++.+. .++.+++.+|.+|. . | ++++|+.+|+++. |.++.+++.+|.+|.. ..++++|+.+|
T Consensus 273 ~~~~Aa~~--g~~~A~~~Lg~~y~-~-G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 273 YLDNGRAA--DQPRAELLLGKLYY-E-GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHH-H-CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHH-c-CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 99999865 58999999999998 4 6 9999999999998 8999999999999887 44999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 476 ERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 476 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+++.+.. ...+.+.+|.+|.. ..++.+|..+|+++.+..+ +.+...+..+..
T Consensus 346 ~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~ 401 (452)
T 3e4b_A 346 LTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEA 401 (452)
T ss_dssp HHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHT
T ss_pred HHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 9998853 34788999999985 4689999999999988754 455555555544
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=224.99 Aligned_cols=288 Identities=15% Similarity=0.153 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMT 284 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 284 (561)
...++..|.++...|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34456679999999999999999999999999884 67889999999999999999999999876 334467
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cC--------------------HhHHHH
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGALS 337 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~~ 337 (561)
++..+|.++...|++++|+..+++++...|.. ..++..+|.++.. |+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 88899999999999999999999998876543 4478888888888 88 889999
Q ss_pred HHHHHHhc------cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 008550 338 YAEKSIRI------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 338 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 404 (561)
++++++.+ .|....++..+|.++...|++++|+..++++++..+.. .++..+|.++...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88888876 23334567888888888888888888888888774432 257788888888888888888
Q ss_pred HHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHH
Q 008550 405 AAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 405 ~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~ 472 (561)
.+++++...|.. ..++..+|.++... |++++|+.++++++...+.. ..++..+|.++...|++++|+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888776654 66778888888887 88888888888888765433 457778888888888888888
Q ss_pred HHHHHHHhhCCC---h----HHHHHHHHHHHHcCCHHH
Q 008550 473 SLLERYLKDWAD---D----SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 473 ~~~~~~~~~~~~---~----~~~~~la~~~~~~g~~~~ 503 (561)
.+++++++..+. . .++..+|.++...|+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 888888776421 1 577788888888887643
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=219.95 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=252.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhc------CCC
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPS 315 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~ 315 (561)
+.....+..+|.++...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567889999999999999999999999999999984 57889999999999999999999998876 233
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCC--------------------hhH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKR--------------------PEA 368 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~ 368 (561)
...++..+|.++.. |++++|+.++++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46689999999999 99999999999999887654 3488999999999999 999
Q ss_pred HHHHHHHhHHhC---CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHhhhcCChH
Q 008550 369 AVIAFRGAQELR---PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------KALKLVGDVHASNASGRE 435 (561)
Q Consensus 369 A~~~~~~~~~~~---~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~ 435 (561)
|+..+.+++... ++. .++..+|.++...|++++|+..+++++...|... .++..+|.++... |+++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChH
Confidence 999999998762 222 3588999999999999999999999998766543 3889999999998 9999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHcCCHH
Q 008550 436 KAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~ 502 (561)
+|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+. ..++..+|.++...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999887655 668889999999999999999999999987542 168899999999999999
Q ss_pred HHHHHHHHHHhcC------CccHHHHHHHHHHHHhccCC
Q 008550 503 EALSHYEAALRIN------SQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 503 ~A~~~~~~al~~~------p~~~~~~~~l~~l~~~~~~~ 535 (561)
+|..+|++++++. +....++..++.++..++..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999983 44477888999999888643
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.8e-25 Score=216.76 Aligned_cols=282 Identities=16% Similarity=0.136 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCC
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPY 281 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~ 281 (561)
......++..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34444455566666666666666666666666666665 35666666666666666666666666655 333
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
...++..+|.++...|++++|+..+++++...+... ..|....++..+|.++.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG---------------------------DRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh---------------------------chHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554411000 02222334455555555
Q ss_pred hcCC-----------------hhHHHHHHHHhHHhCC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-
Q 008550 362 SMKR-----------------PEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS- 416 (561)
Q Consensus 362 ~~~~-----------------~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 416 (561)
..|+ +++|+..+++++...+ +. .++..+|.++...|++++|+..+++++...|..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555555544321 11 246667777777777777777777776655432
Q ss_pred -----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 417 -----AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 417 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
..++..+|.++... |++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 23677778888877 88888888888887766533 4577888888888888888888888888765422
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
.++..+|.++...|++++|..+|++++++.+.....
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 578899999999999999999999999998765443
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=3e-25 Score=215.11 Aligned_cols=284 Identities=12% Similarity=0.036 Sum_probs=207.8
Q ss_pred CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------C
Q 008550 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------F 245 (561)
Q Consensus 172 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~ 245 (561)
|.....+..++..+...+++..+...+.+.....+.+. ......++..|.++...|++++|+..+++++.. .
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL--RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 44455667788889999999999999999988755321 112234567799999999999999999999987 4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhcCC-----------------HhHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLLKVKCD-----------------YSKL 302 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~A 302 (561)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 666789999999999999999999999999987 34445566677777777776 5555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
+.++++++...+.. ...+....++..+|.++...|++++|+..++++++..+.
T Consensus 203 ~~~~~~al~~~~~~---------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 203 VEFYQENLKLMRDL---------------------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 55444443321100 001122345666777777777777777777777766543
Q ss_pred h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC
Q 008550 383 L-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (561)
Q Consensus 383 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p 449 (561)
. .++..+|.++...|++++|+..+++++...|.. ..++..+|.++... |++++|+.++++++...+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 2 256777888888888888888888877766543 56777888888887 888888888888887643
Q ss_pred CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 450 GY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 450 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.. ..++..+|.++...|++++|+.+++++++..+..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 32 3477888999999999999999999988877643
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=5.4e-25 Score=207.09 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTY 285 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 285 (561)
...+..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455668888888888888888888888888874 66778888888888888888888888776 3333556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cC--------------------HhHHHHH
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGALSY 338 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~~~ 338 (561)
+..+|.++...|++++|+..+++++...|.. ..++..+|.++.. |+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6677777777777777777777766654332 1245555555555 55 4444444
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-
Q 008550 339 AEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS- 416 (561)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 416 (561)
+++++...+.... .+.. .++..+|.++...|++++|+..+++++...|..
T Consensus 166 ~~~a~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 166 YEENLSLVTALGD----------------------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHHHHHHTC----------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC----------------------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4444432110000 0000 235556666666666666666666666543321
Q ss_pred -----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 417 -----AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 417 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
..++..+|.++... |++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 23666777777776 77777777777777665443 4567778888888888888888888887765321
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.++..+|.++...|++++|..+|++++++.+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 477888888888888888888888888887653
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=6.3e-25 Score=206.61 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
..++..|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++...+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 3455666677777777777777777777666663 445566666666666666666666555431000
Q ss_pred HHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCC
Q 008550 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSK 398 (561)
Q Consensus 326 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 398 (561)
+ ..|....++..+|.++...|++++|+..++++++..+.. .++..+|.++...|+
T Consensus 77 ----~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 ----G--------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ----T--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c--------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 0 022223455566666666666666666666665553221 246677777777777
Q ss_pred --------------------HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 399 --------------------VKEALYAAREAMKA------MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 399 --------------------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+++|+..+++++.. .|....++..+|.++... |++++|+.+++++++..|...
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcC
Confidence 77777777777654 233356889999999998 999999999999998755432
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-
Q 008550 453 ------GAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQEALSHYEAALRINSQN- 518 (561)
Q Consensus 453 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 518 (561)
.++..+|.++...|++++|+..+++++...+. ..++..+|.++...|++++|..++++++...|..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 38899999999999999999999999987543 2688999999999999999999999999986654
Q ss_pred -----HHHHHHHHHHHHhcc
Q 008550 519 -----EAAKKGLERLEKQMK 533 (561)
Q Consensus 519 -----~~~~~~l~~l~~~~~ 533 (561)
..++..++.++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcC
Confidence 457888898888776
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=6.9e-26 Score=206.68 Aligned_cols=244 Identities=11% Similarity=0.007 Sum_probs=150.1
Q ss_pred HccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 227 ASNDYKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
..|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4577888888888888763 345677788888888888888888888888888887777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.+.......+.. ...|++++|+..+.+++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777777766 777777777777777777666444443322 444566666666666655555
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ----SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
.......++.++...++.++|+..+++++...|. ++.++..+|.++... |++++|+..|++++..+|++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~--- 251 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHNFVE--- 251 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTTCHH---
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCchhHHH---
Confidence 5433334555555555555555555555443332 134444555555544 55555555555555554443222
Q ss_pred HHHHHHHcCChHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~ 475 (561)
.+.++...|++++|++.+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 133444444444444433
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=9.7e-25 Score=199.04 Aligned_cols=247 Identities=11% Similarity=0.031 Sum_probs=194.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH
Q 008550 258 VDAIIGKNDEAILNFEKVRSID----PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE 332 (561)
Q Consensus 258 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 332 (561)
.....|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. |++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3344578889999999988873 44567888889999999999999999999998888888888889988888 899
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|++........+....|++++|+..+++++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999999888888888888999998899999999999888888888754333334456678888888888888888
Q ss_pred CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH
Q 008550 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
.|.+...+. ++.++... ++.++|+..+++++...|.. +.++..+|.++...|++++|+..|++++...|++ +
T Consensus 174 ~~~~~~~~~-~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 249 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--F 249 (275)
T ss_dssp SCCCSTHHH-HHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--C
T ss_pred CCcchHHHH-HHHHHHHh-cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--H
Confidence 887766654 55566665 77788888888887766533 5778888888888888888888888888888766 2
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~ 508 (561)
...+.++..+|++++|++.|
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 23366777888888888776
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.2e-24 Score=192.71 Aligned_cols=214 Identities=19% Similarity=0.132 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
+..++.+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.. .++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4566777777777 788888888888888888778888888888888888888888888888887766 55778888888
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
..|++++|+..++++++..|.++.++..+|.++... |++++|+..++++++..|.++.++..+|.++...|++++|+..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888888888888888888888887 8888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 475 LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 475 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
++++++..|+. .++..+|.++...|++++|..+|+++++++|+++.++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 88888888765 7888888888888999999999999999999888888888777654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.5e-24 Score=192.33 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444443 334445555555555555555555
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
+++...|+++.++..+|.++... |++++|+.+++++++.+|+++.++..++.+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555555555555555555554 555555555555555555555555444443
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=1.2e-23 Score=194.64 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh-------cCCH-------hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV-------KCDY-------SKLSKLVHDLLS-IDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~- 329 (561)
++|+..|++++..+|.++.+|..+|..+.. .|++ ++|+..|++++. ..|++..+|..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 445555555555555555555555555442 3553 566666666666 466666666666666665
Q ss_pred cCHhHHHHHHHHHHhccCCChh-HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH-hcCCHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIP-GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL-QFSKVKEALYAA 406 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~A~~~~ 406 (561)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.. ..|...+.+.. ..|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666554 66666666666666666666666666665554 33444444432 257777777777
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL---EPG-YLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
+++++.+|+++.+|..++.++... |++++|+.+|++++.. .|+ ...+|..++..+...|++++|..+++++++..
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 777777777778887777777776 7888888888888774 442 56677777777777788888888888887777
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
|++.....++.+ ..-.+++.++|+++.+.+.|+
T Consensus 272 p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 272 REEYEGKETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp TTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred ccccccchHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 764100011111 111156677888887776554
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.6e-23 Score=178.17 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=134.5
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+++.+|+.+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 345677777777777777777777777777777776 5577777777777778888888888777888888888888887
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
+... ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+ .++..+|.+|..+|++++|+
T Consensus 83 ~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 7777 788888888888888888888888888888888888888888888888877766 77788888888888888888
Q ss_pred HHHHHHHhcCCccHH
Q 008550 506 SHYEAALRINSQNEA 520 (561)
Q Consensus 506 ~~~~~al~~~p~~~~ 520 (561)
.+|+++++++|+++.
T Consensus 162 ~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 162 KYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCccCHH
Confidence 888888888887643
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=4e-21 Score=198.01 Aligned_cols=402 Identities=11% Similarity=0.062 Sum_probs=285.0
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhccc-CccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHH
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKI-VPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 125 (561)
-...+.|...|.+.+|+..|++++ ..|+ ..+ ....-..++++.++. +..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~----------------------------n~~LqnlLi~tAIka-D~~ 1038 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSE----------------------------HRNLQNLLILTAIKA-DRT 1038 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccc----------------------------cHHHHHHHHHHHHHh-Chh
Confidence 345566679999999999999999 4543 111 111111233333333 333
Q ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCC
Q 008550 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205 (561)
Q Consensus 126 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (561)
+...+++++. ... .-.+|.++...|.+++|..+|+++- .+..+...+. ...++++++.+.+.+.
T Consensus 1039 Rv~eyI~kLd-~~d----~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLi---e~i~nldrAiE~Aerv---- 1102 (1630)
T 1xi4_A 1039 RVMEYINRLD-NYD----APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLI---EHIGNLDRAYEFAERC---- 1102 (1630)
T ss_pred hHHHHHHHhh-hcc----HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHH---HHHhhHHHHHHHHHhc----
Confidence 3333333332 100 1226777777777777777777762 2222222221 1334444444444322
Q ss_pred CCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
..+..|..+ |.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+
T Consensus 1103 ----n~p~vWsqL---AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~I 1169 (1630)
T 1xi4_A 1103 ----NEPAVWSQL---AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YV 1169 (1630)
T ss_pred ----CCHHHHHHH---HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cc
Confidence 124444433 99999999999999999775 788999999999999999999999999999887543 23
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
-..+|.+|.+.+++++. +.| + ..+ +...+..+|..+.. |++++|..+|.++ ..|..+|.++.++|
T Consensus 1170 dt~LafaYAKl~rleel-e~f---I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAEL-EEF---I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 1235 (1630)
T ss_pred cHHHHHHHHhhcCHHHH-HHH---H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC
Confidence 33588999999988853 333 2 233 44566689999998 9999999999986 47889999999999
Q ss_pred ChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
++++|++.++++ .+..+|...+.++...|++..|..+... +.. +++.+..++..|... |.+++|+.+++++
T Consensus 1236 e~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~-G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1236 EYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR-GYFEELITMLEAA 1306 (1630)
T ss_pred CHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999988 3347799999999999999999987764 333 456666888899988 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 008550 445 LRLEPGYLGAALALAELHVIE--GRNGDAVSLLERYLKDWA-----DD-SLHVKLAQVFAATNMLQEALSHYEAALRI-- 514 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~-----~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 514 (561)
+.++|.+...+..++.++.+- ++..++++.|...+.+.+ .. ..|..+..+|.+-|+++.|....-.....
T Consensus 1307 L~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1307 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred hccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 999999999998888877654 678888899988877765 22 78999999999999999999333222211
Q ss_pred ----------CCccHHHHHHHHHHHH
Q 008550 515 ----------NSQNEAAKKGLERLEK 530 (561)
Q Consensus 515 ----------~p~~~~~~~~l~~l~~ 530 (561)
.+.|++.++.....+-
T Consensus 1387 ~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1387 KEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred hhHHHHHHhcccccHHHHHHHHHHHH
Confidence 4667777666655543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=2e-22 Score=183.30 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=160.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+|+++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 355666666666666666666667666666666 5556666666666666 55555555555555543
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh-
Q 008550 321 VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ- 395 (561)
Q Consensus 321 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~- 395 (561)
+ ++.++..+|.++.. .+++++|+..|+++++.. ...++..+|.+|..
T Consensus 72 -------------------------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 72 -------------------------N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDG 123 (273)
T ss_dssp -------------------------T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHC
T ss_pred -------------------------C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcC
Confidence 2 44555555666655 666667777666666653 33556677777776
Q ss_pred ---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 396 ---FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI---- 464 (561)
Q Consensus 396 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 464 (561)
.+++++|+.+|+++++.. ++.++..+|.++.. . +++++|+.+|+++++.. ++.++..+|.++..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP-KDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSS
T ss_pred CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence 777777777777777654 56777777777776 5 77788888888877663 46777788888888
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
.+++++|+.+++++++..+ ..++..+|.+|.. .+++++|+.+|+++++..|++...+
T Consensus 199 ~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888888877755 5677788888887 8888888888888888877654443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=2.9e-23 Score=186.56 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
+.++..+|.++.. |++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.. .++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 4556666666666 666666666666666666666666666666666666666666666666666655 44666666666
Q ss_pred hcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 395 QFSKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
..|++++|+..+++++. ..|.++.++..+|.++... |++++|+.+++++++..|.++.++..+|.++...|++++|+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777777666 5666667777777777776 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 473 SLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 473 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
..++++++..|.. ..+..++.++...|++++|..+++++++.+|+++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777777776655 667777777777777777777777777777777766543
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=6.3e-23 Score=180.80 Aligned_cols=212 Identities=17% Similarity=0.149 Sum_probs=139.4
Q ss_pred CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
.|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+ .++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34445555556655555 666666666666666666666666666666666666666666666666665554 3456666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 391 HSYLQF-SKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 391 ~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
.++... |++++|+..+++++. ..|.+..++..+|.++... |++++|+..++++++..|.++.++..+|.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 666666 666666666666666 4455566667777777766 777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWA-DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~-~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
+++|+..++++++..| .+ ..+..++.++...|+.++|..+++.+.+.+|+++.+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7777777777777666 44 5566666777777777777777777777777777765544
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=4.7e-23 Score=185.14 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555444444444444444444
Q ss_pred h-cCHhHHHHHHHHHHh--ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 008550 329 R-KDERGALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (561)
. |++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 444444444444444 334444444444444444444444444444444444443 334444444444444444444
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
.+++++...|.+...+..++.++... |++++|..+++++++..|+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHH
Confidence 44444444444444444444444444 4444444444444444444443
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=4e-22 Score=181.30 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
....+..|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34556779999999999999999999998 7889999999999999 999999999999999985 789999999
Q ss_pred HHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 291 MLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 291 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
.++.. .+++++|+..++++++. .++.++..+|.++.. +++++|+.+|+++++.. ++.++..+|.++.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 99999 99999999999888876 367777777777653 56667777777766654 4556666666666
Q ss_pred h----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh----
Q 008550 362 S----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS---- 429 (561)
Q Consensus 362 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 429 (561)
. .+++++|+..|+++++.. ...++..+|.+|.. .+++++|+.+++++++..| +.++..+|.++..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 6 666666666666666542 22445556666666 6666666666666655543 5555566666655
Q ss_pred hcCChHHHHHHHHHHHHhCCC
Q 008550 430 NASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~ 450 (561)
. +++++|+.+|+++++..|.
T Consensus 235 ~-~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 235 T-RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp S-CCSTTHHHHHHHHHHHTCH
T ss_pred c-cCHHHHHHHHHHHHHcCCH
Confidence 4 5566666666666655554
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=7.6e-23 Score=189.16 Aligned_cols=257 Identities=11% Similarity=0.092 Sum_probs=217.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCH------
Q 008550 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY------ 231 (561)
Q Consensus 158 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------ 231 (561)
++|+..|++++..+|.++.+|..++...... +..+...|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~---------------------------------~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS---------------------------------SKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------------------chhhhhccchhhcccc
Confidence 7899999999999999999999885443211 1112245664
Q ss_pred -HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 232 -KGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-YMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 232 -~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
++|+..|+++++ .+|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999 69999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH-h-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh---CCC-
Q 008550 309 LLSIDPSRPEVFVALSVLWE-R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---RPD- 382 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~-~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~- 382 (561)
+++..|....+|...+.+.. . |++++|+..|+++++..|+++.+|..+|.++...|++++|+..|++++.. .|+
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 99999999888887777654 3 99999999999999999999999999999999999999999999999996 443
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 383 L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 383 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
. ..|..++..+...|++++|..+++++++..|+++..... +.+ . .++ +.+.+.|.++..+..+|.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-~---~r~--------~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-V---DRY--------KFMDLYPCSASELKALGY 305 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-H---TTT--------CBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-H---HHH--------HhcccCCCCHHHHHhcCC
Confidence 2 568888999999999999999999999999976533221 222 1 111 456788999888877663
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=3.2e-23 Score=176.31 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666555555555555555555
Q ss_pred Hh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHH
Q 008550 328 ER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 328 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.. ++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.+ .++..+|.++...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55 555555555555555555555555555555555555555555555555555554 3455555555555555555555
Q ss_pred HHHHHHHCCC
Q 008550 406 AREAMKAMPQ 415 (561)
Q Consensus 406 ~~~~~~~~p~ 415 (561)
|+++++.+|+
T Consensus 164 ~~~al~~~p~ 173 (184)
T 3vtx_A 164 FKKALEKEEK 173 (184)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHhCCcc
Confidence 5555555554
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=1.9e-21 Score=200.34 Aligned_cols=393 Identities=12% Similarity=0.027 Sum_probs=286.7
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHH-------------------------HHHHhhhchhH
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLII-------------------------LGDSLFRDREY 59 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------------------------~g~~~~~~~~~ 59 (561)
--.++.++..|++.+|+.+.+.++.. + ...+.......++. +|.++...|.|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~-~--s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD-N--SVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC-C--CcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 34578888999999999999998843 1 11111112222222 36677777777
Q ss_pred HHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc
Q 008550 60 RRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR 139 (561)
Q Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~ 139 (561)
++|...|+++-... ..+...+...|++++|++.++++ .
T Consensus 1066 EEAf~IYkKa~~~~--------------------------------------~A~~VLie~i~nldrAiE~Aerv----n 1103 (1630)
T 1xi4_A 1066 EEAFAIFRKFDVNT--------------------------------------SAVQVLIEHIGNLDRAYEFAERC----N 1103 (1630)
T ss_pred HHHHHHHHHcCCHH--------------------------------------HHHHHHHHHHhhHHHHHHHHHhc----C
Confidence 77777777753210 11222333777888888887765 3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
.+.+|+.+|..+...|++++|+..|.++ +++..+..+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eV-------------------------------------- 1140 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV-------------------------------------- 1140 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHH--------------------------------------
Confidence 4678888888888888888888888765 555555544
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ...+...+..+|..+...|++
T Consensus 1141 --a~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1141 --VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred --HHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCH
Confidence 88888999999999999999887744 3334458999999998885 44442 233446677899999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
++|..+|.++ ..|..++.++.. |++++|++.+.++ .+..+|...+.++...|++..|..+... +.
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 9999999885 478899999999 9999999999998 5678999999999999999999988774 33
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHhCC-----CCH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAKKFYESALRLEP-----GYL 452 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~p-----~~~ 452 (561)
.+|+ .+..++..|...|.+++|+.+++.++.++|.+...+..+|.++.+- .++..++++.|...+.+.| .+.
T Consensus 1278 v~~d--eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1278 VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 3333 3557888899999999999999999999999999998888887653 2556778888887777766 667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------------HhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERY-------------LKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
..|..+..+|.+-|+++.|+..+-.. +....+.++++.....|...+ ..++..+..++
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~--P~~lndLl~~l 1426 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVL 1426 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC--hHHHHHHHHHh
Confidence 88999999999999999998443332 222233478888888887554 34444444444
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=3.3e-23 Score=198.44 Aligned_cols=301 Identities=15% Similarity=0.105 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHhCCHHHHH-----------HHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEM----AKVDAIIGKNDEAI-----------LNFEKV 275 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l----a~~~~~~~~~~~A~-----------~~~~~~ 275 (561)
.....+......+..+++++|..+++++.+..+ .+..+.... .+.....+.++.+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 334455557778899999999999999876432 345444222 22333344445554 555554
Q ss_pred HhhCCCChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHh-cCHhHHHHHHHHH
Q 008550 276 RSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSI---DPS---RPEVFVALSVLWER-KDERGALSYAEKS 342 (561)
Q Consensus 276 ~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~~~ 342 (561)
-. .|.... .++..|.++...|++++|+..+++++.. .++ .+.++..+|.++.. |++++|+.+++++
T Consensus 91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 333323 3445899999999999999999999987 233 35789999999999 9999999999999
Q ss_pred HhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 343 IRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 343 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+.+.+... .++..+|.++...|++++|+..++++++..+.. .++.++|.+|...|++++|+.++++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99855443 578999999999999999999999999885432 3688999999999999999999999
Q ss_pred HHH-----HC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHH
Q 008550 409 AMK-----AM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-----PGYLGAALALAELHVIEGR---NGDAVSL 474 (561)
Q Consensus 409 ~~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~ 474 (561)
++. .+ |..+.++..+|.++... |++++|+.++++++++. |.....+..++.++...|+ +.+|+..
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999 46 77789999999999998 99999999999999874 3333345679999999999 7888888
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 475 LERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 475 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
+++.-.......++..+|.+|...|++++|..+|++++++..
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 877621111227889999999999999999999999988643
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=4.2e-22 Score=175.51 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=145.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
.|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666 6666666666676666777777777777
Q ss_pred HHHHhc-CChhHHHHHHHHhHH--hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 358 NLLLSM-KRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 358 ~~~~~~-~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.++... |++++|+..++++++ ..|.. ..+..+|.++...|++++|+..++++++..|+++.++..+|.++... |+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CC
Confidence 777777 777777777777777 34443 45777777777777777777777777777777777777777777776 77
Q ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 434 REKAKKFYESALRLEP-GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++|+..++++++..| .++..+..++.++...|++++|..+++.+.+..|++
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 7777777777777777 777777777777777777777777777777777765
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=2.7e-22 Score=177.09 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
+.++..++.+|.++.. |++++|+..|++++...| .+..+++.+|.++...|++++|+..|+++++.+|++ .++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4566788888888887 888888888888888887 777888888888888888888888888888888887 5688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPG--YLGAALALAEL 461 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~ 461 (561)
.++...|++++|+..++++++.+|+++ .++..+|.++... |++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 888888888888888888888888887 6688899999988 9999999999999999999 88999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+...|+ ..++++....+.. .....+......+.+++|+.+|+++++++|+++.+...+..+...+
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSN-KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHH-----HHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 976654 4456666665444 1223444556678899999999999999999999999999887654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=4.1e-23 Score=202.26 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=144.5
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH-hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+++++..+++.....|.++.+++.+|.++.. |++ ++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555566666666666666666666666666 666 66666666666666666666666666666666666666666666
Q ss_pred HHhCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-------cCChHHHHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQF---------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-------ASGREKAKKF 440 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------~~~~~~A~~~ 440 (561)
++.+|+..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... .|++++|+.+
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 66666655566666666666 6777777777777777777777777777666541 0556777777
Q ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 441 YESALRLEP---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 441 ~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
|+++++++| .++.++..+|.++...|++++|+..|+++++..|+. .++..++.++..+|++++|++.+.+.
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777777777 667777777777777777777777777777777665 56677777777777777777665543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=5.9e-23 Score=201.16 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=204.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+.+++++..+.......|.+..++..+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++.. |++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4578889999999999999999999999999999999 999999999999999999999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhc---------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc--------CCHHHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSM---------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEA 402 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A 402 (561)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++ .+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999 79999999999999 99999999999999999998 6799999999999 999999
Q ss_pred HHHHHHHHHHCC---CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 403 LYAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 403 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+..|++++..+| +++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999 9999999999999998 9999999999999999999999999999999999999999887654
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.8e-21 Score=171.68 Aligned_cols=208 Identities=9% Similarity=0.076 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
.++..++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3445555555555555555555555555555555 444555555555555555555555555555555555555555555
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYL 394 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~ 394 (561)
++.. |++++|+..++++++..|+++ .++..+|.++...|++++|+..|+++++.+|+ + .++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555 555555555555555555554 34555555555666666666666666655555 4 34555555554
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 462 (561)
..|+ ..++++....+.+...+. +...... +.+++|+.+|+++++++|+++.+...++.+.
T Consensus 165 ~~~~-----~~~~~a~~~~~~~~~~~~--~~~~~~~-~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNGA-----DVLRKATPLASSNKEKYA--SEKAKAD-AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHH-----HHHHHHGGGTTTCHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcccCCHHHHH--HHHHHHH-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4332 233444444444433322 2222233 5566666666666666666666665555543
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=2.7e-22 Score=192.12 Aligned_cols=308 Identities=11% Similarity=0.052 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHH--HHHH
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKI--ASCH 118 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--a~~~ 118 (561)
......+.-...+..++++++|...++++.+.-+.... ..+...++.+ .+..
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~--------------------------~~~~~~y~~ll~~r~~ 63 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEE--------------------------DQDLHLYYSLMEFRHN 63 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCC--------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcc--------------------------chHHHHHHHHHHHHHH
Confidence 34445555566778899999999999998776432210 0111122222 2222
Q ss_pred HhcCCHHHHH-----------HHHhcCCCcccchh------HHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCcHHHH
Q 008550 119 FALGETKAAI-----------VEMEGIPSKARNLQ------MSLLMAKLYRNSRHNRGAVACYKECLRHC---PFFIEAI 178 (561)
Q Consensus 119 ~~~~~~~~A~-----------~~l~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~ 178 (561)
+..+.+..+. ..++.+...+.... .++.+|.++...|++++|+..|++++... |+.....
T Consensus 64 ~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 143 (383)
T 3ulq_A 64 LMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKA 143 (383)
T ss_dssp HHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH
T ss_pred HHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 3334444444 45555433332222 34559999999999999999999999863 3222111
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-------IHI 251 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 251 (561)
..++..|.++...|++++|+..++++++..+.. ..+
T Consensus 144 -------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 144 -------------------------------------EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp -------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 122344999999999999999999999874332 457
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cC-CCCHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMDEYAMLLKVKCDYSKLSKLVHDLLS-----ID-PSRPEV 319 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~ 319 (561)
+..+|.++...|++++|+.+|+++++..|... .++..+|.++...|++++|+.++++++. .. |..+.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 88899999999999999999999988755432 3666777777777777777777777766 33 444555
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccC-----CChhHHHHHHHHHHhcCC---hhHHHHHHHHhHHhCCCh-HHHHHH
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLSMKR---PEAAVIAFRGAQELRPDL-RSYQGL 389 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~l 389 (561)
+..+|.++.. |++++|+.++++++.+.+ .....+..+|.++...|+ +.+|+..+++.- ..|.. .++..+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 345 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 6666666666 666666666666655422 111223445555555555 444444444431 00111 234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
|.+|...|++++|..++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555555555555555555443
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=5.2e-22 Score=201.46 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=127.8
Q ss_pred CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
.|++++++..+|.++.. |++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|++ .++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777 777777777777777777777777777777777777777777777777777776 5577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
.++..+|++++|++.|+++++++|+++.++.++|.++... |++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777777777777777777777777776 777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhCCC
Q 008550 471 AVSLLERYLKDWAD 484 (561)
Q Consensus 471 A~~~~~~~~~~~~~ 484 (561)
|.+.++++++..|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 77777777766544
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=1.2e-21 Score=198.87 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=159.3
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
..|++++++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.. |++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4688889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (561)
|.++..+|++++|+..|+++++++|++ .++.++|.++...|++++|+..|+++++++|+++.++..+|.++... |+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc-ccHH
Confidence 999999999999999999999999988 67999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhCCC
Q 008550 436 KAKKFYESALRLEPG 450 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~ 450 (561)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999887654
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=7e-20 Score=165.10 Aligned_cols=227 Identities=8% Similarity=-0.022 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHhccCCChhHHHHHHHHH----Hhc---CChhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGNLL----LSM---KRPEAA 369 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A 369 (561)
++|+..+.+++.++|++..+|...+.++.. + ++++++.+++.++..+|++..+|..++.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 456666666666666666666666666655 5 666666666666666666666666666666 444 567777
Q ss_pred HHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC------hHHHHHH
Q 008550 370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK--EALYAAREAMKAMPQSAKALKLVGDVHASNASG------REKAKKF 440 (561)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------~~~A~~~ 440 (561)
+.++.++++.+|.+ .+|...+.+....|.++ +++.++.++++.+|.+..+|..++.++... +. +++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhhHHHHHHH
Confidence 77777777777776 56777777777777776 788888888888888888888888877776 65 7888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhC---CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 008550 441 YESALRLEPGYLGAALALAELHVIEGRNGD-AVSLLERYLKDW---ADD-SLHVKLAQVFAATNMLQEALSHYEAALR-I 514 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~---~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~-~ 514 (561)
+.+++..+|++..+|..++.++...|+... ...++++++... +.+ .++..++.++.+.|+.++|+++|+.+.+ .
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 888888888888888888888888887555 445666666654 333 6788888888888888888888888886 7
Q ss_pred CCccHHHHHHHHH
Q 008550 515 NSQNEAAKKGLER 527 (561)
Q Consensus 515 ~p~~~~~~~~l~~ 527 (561)
+|-....|...+.
T Consensus 289 Dpir~~yW~~~~~ 301 (306)
T 3dra_A 289 NPIRSNFWDYQIS 301 (306)
T ss_dssp CGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 8888888776654
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.88 E-value=5.4e-18 Score=169.89 Aligned_cols=227 Identities=7% Similarity=-0.018 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH-HHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
.....+|++++...|..+.+|+..+..... |+.++|+ ..|++++...|.+...|...+.+....|+++.|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345678999999999999999999999988 9999997 99999999999999999999999999999999999999998
Q ss_pred Hh-----------CCC-----------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHhhhcCC
Q 008550 378 EL-----------RPD-----------L-RSYQGLVHSYLQFSKVKEALYAAREAMKA-MPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 378 ~~-----------~~~-----------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.. .|. . .+|...+....+.|..+.|..+|.++++. .+....++...+.+.....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 75 243 2 35888888888999999999999999987 445567777777776665355
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---h-HHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ . .+|..........|+.+.+.+.++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998884 2 789999999999999999999999
Q ss_pred HHHhcCCccHHHHHHHH
Q 008550 510 AALRINSQNEAAKKGLE 526 (561)
Q Consensus 510 ~al~~~p~~~~~~~~l~ 526 (561)
++.+..|+++....-..
T Consensus 566 R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 566 RFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHSTTCCHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHH
Confidence 99999999876554443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=185.63 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
....++..|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555542 3333444555555555555555555555555443
No 72
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=1.9e-22 Score=186.86 Aligned_cols=322 Identities=11% Similarity=-0.005 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 117 CHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
...+.|+.++|...++++. .+.+|..+|..+...|++++|+..|.++ .++..+...
T Consensus 12 ll~~~~~ld~A~~fae~~~----~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V--------------- 67 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV--------------- 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHH---------------
Confidence 3346778888888888872 2368889999999999999999988764 233333333
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++.
T Consensus 68 -------------------------~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-- 119 (449)
T 1b89_A 68 -------------------------VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-- 119 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTTC--
T ss_pred -------------------------HHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC--
Confidence 44455568888888877777765333 66777788888888888887777642
Q ss_pred hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHH
Q 008550 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM 355 (561)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (561)
| +..+|..+|..+...|++++|..+|.++ ..|..++.++.. |++++|++.++++ .++.+|..
T Consensus 120 ---p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 120 ---P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp ---C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred ---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHH
Confidence 3 3357888888888888888888888766 467788888888 8888888888887 36777888
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-cCCh
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGR 434 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~ 434 (561)
.+.++...|+++.|..+....+ ..|+. ...++..|.+.|++++|+.++++++..++.+...+..+|.++.+- .++.
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-VHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888866665422 34433 335677788888888888888888888888888888888777653 1344
Q ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------------CCChHHHHHHHHHHH
Q 008550 435 EKAKKFYESALRLEP-----GYLGAALALAELHVIEGRNGDAVSLLERYLKD-------------WADDSLHVKLAQVFA 496 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~la~~~~ 496 (561)
.+.++.|...+.+.| .++..|..+..+|...++++.|+..+-..... -.+.++++.....|.
T Consensus 260 ~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 260 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 555666655555555 56677888888888888888877755443221 122366666666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEAAL 512 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al 512 (561)
+....++..+..++
T Consensus 340 --~~~p~~l~~ll~~l 353 (449)
T 1b89_A 340 --EFKPLLLNDLLMVL 353 (449)
T ss_dssp --HHCGGGHHHHHHHH
T ss_pred --hcCHHHHHHHHHHH
Confidence 44556666666666
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=184.20 Aligned_cols=243 Identities=16% Similarity=0.174 Sum_probs=133.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC--
Q 008550 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-- 313 (561)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 313 (561)
.+|..+.++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888888888888874 45556677777777777777777777777776552
Q ss_pred ------CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 314 ------PSRPEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 314 ------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
|....++..+|.++.. |++++|+.++++++... |....++..+|.++...|++++|+.++++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334455555555555 66666666666555542 22234444555555555555555555555544
Q ss_pred hC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC----
Q 008550 379 LR-----PDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP---- 449 (561)
Q Consensus 379 ~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p---- 449 (561)
.. ++ .|....++..+|.++... |++++|+.+++++++..|
T Consensus 182 ~~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 182 IYQTKLGPD------------------------------DPNVAKTKNNLASCYLKQ-GKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHTSCTT------------------------------CHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC------------------------------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Confidence 40 00 333334444444444444 444444444444443211
Q ss_pred -----CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 450 -----GY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 450 -----~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.. ...+...+..+...+.+.+|...+.++....|.. .++..+|.+|...|++++|..+|++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333444445556666666666666655554 66777777777777777777777777776654
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=7.3e-20 Score=164.99 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=154.8
Q ss_pred HHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHH----Hhc
Q 008550 224 CCIASNDY-KGGLELFAELLQRFPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVK 296 (561)
Q Consensus 224 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 296 (561)
.....|.+ ++|+..+.+++..+|++..+|..++.++...| ++++++..+..++..+|++..+|...+.++ ...
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33444544 47788888888888888888888888777777 777777777777777777777777777776 444
Q ss_pred ---CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh--HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 297 ---CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER--GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 297 ---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
+++++++.++.++++.+|.+..+|...+.+... +.++ +++.++++++..+|.+..+|..++.+....++..
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--- 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--- 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence 455566666666666666666666655555555 5555 5555555555555555555555555554444300
Q ss_pred HHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh-HHHHHHHHHHHHhC-
Q 008550 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLE- 448 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~- 448 (561)
....++++++++.+++..+|++..+|+.++.++... |+. +.....+.+++.++
T Consensus 198 ------------------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 198 ------------------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGG
T ss_pred ------------------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccC
Confidence 000166677777777777777777777777777666 553 33445555555554
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCh-HHHHHHHH
Q 008550 449 --PGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADD-SLHVKLAQ 493 (561)
Q Consensus 449 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~la~ 493 (561)
|.++.++..++.++.+.|+.++|+++++.+.+ .+|-. ..|...+.
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66677777777777777777777777777765 56655 55555443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=4.5e-20 Score=176.16 Aligned_cols=298 Identities=15% Similarity=0.069 Sum_probs=228.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HhCCHHHHH---------HHHHHHHhhCCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVDA----IIGKNDEAI---------LNFEKVRSIDPY 281 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~----~~~~~~~A~---------~~~~~~~~~~~~ 281 (561)
.+..-..++..+++++|..+++++.+..+ .+..+.+..+...+ ..+.+..+. ..++++-.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 34445556789999999999998866422 34555533322222 222222222 444443221111
Q ss_pred -C----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 282 -I----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 282 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
+ ...++..|..+...|++++|+..+++++...+. .+.++..+|.++.. |+++.|+.++++++...+..
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1 125677899999999999999999999987432 25689999999999 99999999999999875542
Q ss_pred -------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 008550 350 -------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMK---- 411 (561)
Q Consensus 350 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 411 (561)
..++..+|.++...|++++|+..|+++++..+ +. .++.++|.++...|++++|+..+++++.
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999998743 22 3588999999999999999999999999
Q ss_pred -HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC
Q 008550 412 -AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-----YLGAALALAELHVIEGR---NGDAVSLLERYLKDW 482 (561)
Q Consensus 412 -~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~ 482 (561)
.+|..+.++..+|.++... |++++|+.+++++++..+. ....+..++.++...|+ +.+|+.++++.-...
T Consensus 255 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChh
Confidence 7788899999999999998 9999999999999998543 34456678888888888 888888888732111
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
....++..+|.+|...|++++|..+|+++++...
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1226888999999999999999999999987643
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=1.4e-20 Score=169.72 Aligned_cols=204 Identities=12% Similarity=0.093 Sum_probs=132.5
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---- 383 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 383 (561)
..|.++..++.+|..+.. |++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 345556666666666665 66666666666666666665 5566666666666666666666666666665532
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 384 RSYQGLVHSYLQ--------FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 384 ~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
.+++.+|.++.. .|++++|+..|++++..+|+++.+...+..+.... +. ....+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~-~~-----------------~~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR-AK-----------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH-HH-----------------HHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH-HH-----------------HHHHH
Confidence 346666666666 67777777777777777776654443333222211 11 11235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCccHH-
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAAT----------NMLQEALSHYEAALRINSQNEA- 520 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~- 520 (561)
+.+|.++...|++++|+..|+++++..|++ .+++.+|.+|..+ |++++|+..|+++++.+|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 777888888888888888888888887763 5788888888866 8888899999999998888854
Q ss_pred --HHHHHHHHHHhcc
Q 008550 521 --AKKGLERLEKQMK 533 (561)
Q Consensus 521 --~~~~l~~l~~~~~ 533 (561)
+...+..+...++
T Consensus 232 ~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 232 RTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4445555555544
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=1.9e-20 Score=161.99 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG----------------LVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.++..|..+...|++++|+..|++++..+|++ .+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33444444444444444444444444444444 23444 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCChHHHHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR--NGDAVSLLERYLKDWADDSLHVKLA 492 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~la 492 (561)
+++.++..+|.++... |++++|+.+|+++++++|+++.++..+|.++...|+ ...+...+.+++...|....++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 9999999999999998 999999999999999999999999999999987764 4556777777765444446788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.++...|++++|+.+|+++++++|++ .+...+.++..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~~ 201 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILR 201 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 99999999999999999999999975 45555666543
No 78
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=2.3e-21 Score=179.64 Aligned_cols=351 Identities=11% Similarity=0.054 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
.++..+|.++.+.|++++|+..|.+. .++..+...+..+...|++++|+.+++.+.+..|+ +.+...++.++.+.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence 48999999999999999999999653 46678899999999999999999999988885444 56666777777777
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 268 (561)
|++..+.+.... | ....| ...|..+...|.|++|+.+|.++ ..+..+|.++.++|++++|
T Consensus 108 g~l~e~e~f~~~-----p----n~~a~---~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 108 NRLAELEEFING-----P----NNAHI---QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHcC-----C----cHHHH---HHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence 777665544421 1 11233 33488888888888888888866 3577888888888888888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
++.++++ .++..|...+.++...|+++.|..+...+. . +|+-...++.+|.. |.+++|+.++++++.+++
T Consensus 168 Vea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 168 VDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 8888887 467788888888888888888866665422 3 33444457777777 888888888888888888
Q ss_pred CChhHHHHHHHHHHh--cCChhHHHHHHHHhHHhCC-----Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 008550 348 RHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRP-----DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA------- 412 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 412 (561)
.+...+..+|.+|.+ .++..+.++.|...+.+.| .. ..|..++.+|...++++.|+...-.....
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f 318 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 318 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH
Confidence 888888888777754 3455666666665555554 22 35778888888888888887765543222
Q ss_pred -----CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 413 -----MPQSAKALKLVGDVHASNASGREKAKKFYESAL--RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 413 -----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.+.+.+.++.....|. +....++..+..++ .+++ ......+.+.|+..-...++..+... ...
T Consensus 319 ~~~~~kv~n~elyYkai~fyl---~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~~-n~~ 388 (449)
T 1b89_A 319 KDIITKVANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQNH-NNK 388 (449)
T ss_dssp HHHHHHCSSTHHHHHHHHHHH---HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHTT-CCH
T ss_pred HHHHhchhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHHh-hHH
Confidence 3445666666666665 33445566666665 3332 23344556667766666666544432 222
Q ss_pred HHHHHHHHHHHHcCCHHH
Q 008550 486 SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~ 503 (561)
.+.-.+-.+|...++++.
T Consensus 389 ~vnealn~l~ieeed~~~ 406 (449)
T 1b89_A 389 SVNESLNNLFITEEDYQA 406 (449)
T ss_dssp HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 455556666777777654
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=2.9e-20 Score=170.25 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=145.5
Q ss_pred cCHhHHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhc
Q 008550 330 KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQF 396 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 396 (561)
|++++|+..|++++.+.+. ...++..+|.+|...|++++|+.+|++++++.|.. .++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5555555555555544321 13456667777777777777777777777665431 2477888888885
Q ss_pred -CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 008550 397 -SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-------AALALAELH 462 (561)
Q Consensus 397 -~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~ 462 (561)
|++++|+.+|++++...|.. ..++..+|.++... |++++|+.+|+++++..|++.. ++..+|.++
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 88888888888888887654 46788889999988 9999999999999998877643 567889999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 463 VIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA--ATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
...|++++|+..|++++++.|+. ..+..++..+. ..+++++|+..|++++.++|.+..++..+.+..
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999888764 23455666664 457899999999999999998877766665544
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=4.8e-20 Score=166.22 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=138.7
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--- 416 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 416 (561)
...|.++..++.+|..++..|++++|+..|+++++..|++ .+++.+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4577888889999999999999999999999999888875 468889999999999999999999999987754
Q ss_pred HHHHHHHHHHHhh--------hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH
Q 008550 417 AKALKLVGDVHAS--------NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~--------~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
+.+++.+|.++.. . |++++|+..|+++++..|+++.+...+..+....+.. ...+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~----------------~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL----------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH----------------HHHH
Confidence 6678888988888 7 8889999999999998888876654444332221111 1337
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHhc
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQ---NEAAKKGLERLEKQM 532 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~l~~~~ 532 (561)
+.+|.+|...|++++|+..|+++++.+|+ .+.++..++.++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999998 567888888877655
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=4.8e-19 Score=169.00 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHH
Q 008550 143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA 222 (561)
Q Consensus 143 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (561)
.++.+|..+...|++++|+..|++++...+..... +.....++..|
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~a~~~~~lg 148 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------------IEKAEFHFKVA 148 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------------HHHHHHHHHHH
Confidence 56778999999999999999999999765321100 00111233449
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------ChHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IMTYMDEY 289 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l 289 (561)
.++...|+++.|+..++++++..+. ...++..+|.++...|++++|+.+|+++++..+. ...++..+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999986432 2457788999999999999999999999886432 12456667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-----ChhHHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLS-----IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGN 358 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~ 358 (561)
|.++...|++++|+.++++++. .+|..+.++..+|.++.. |++++|+.++++++...+. ....+..++.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777766 455555566666666666 6666666666666655332 1223344455
Q ss_pred HHHhcCC---hhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 359 LLLSMKR---PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 359 ~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
++...++ +.+|+..+++.-........+..+|.+|...|++++|..+|+++++
T Consensus 309 ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555 4444444444110000012344555555555555555555555543
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=1.2e-17 Score=167.42 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=295.5
Q ss_pred HHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc---HhHHhhccccc
Q 008550 126 AAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD---IISLFAQTPNR 201 (561)
Q Consensus 126 ~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 201 (561)
+-+..++. +..+|.+...|..+.......+.++.+..+|++++...|.....|...+......+. ...+.....+.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 33444444 566789999999999999999999999999999999999999999988887766666 66665555555
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDY--------KGGLELFAELLQR----FPNNIHILLEMAKVDA--------- 260 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~A~~~~~~~~~~----~~~~~~~~~~la~~~~--------- 260 (561)
....+. ......|..+ .......++. +.....|++++.. ++.+..+|........
T Consensus 130 l~~~~~-~~sv~LW~~Y---l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 130 LSKELG-NNDLSLWLSY---ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp TCSSSC-CCCHHHHHHH---HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHhcCC-CCCHHHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 554431 1345566655 2223333433 3344788888864 6667778877766543
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC-------------CHhHHHHHHHHH------Hhc-CCCC---
Q 008550 261 IIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC-------------DYSKLSKLVHDL------LSI-DPSR--- 316 (561)
Q Consensus 261 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-------------~~~~A~~~~~~~------~~~-~~~~--- 316 (561)
..++.+.+..+|++++.+..... ..|..+...-...+ +|..|...+... +.. .|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34567889999999997533332 34433333222211 233344444332 111 1211
Q ss_pred ----------------HHHHHHHHHHHHh-c-------CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH-H
Q 008550 317 ----------------PEVFVALSVLWER-K-------DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV-I 371 (561)
Q Consensus 317 ----------------~~~~~~l~~~~~~-~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~ 371 (561)
...|......-.. + ........|++++...|..+..|+..+..+...|+.++|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1244444333322 1 1234567899999999999999999999999999999997 9
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------CC-----------CHHHHHHHHHHHh
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAM-----------PQ-----------SAKALKLVGDVHA 428 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~l~~~~~ 428 (561)
.|++++...|.+. .|...+......|++++|..+|++++... |. ...+|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999999999875 48889999999999999999999998752 53 3457888888888
Q ss_pred hhcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 429 SNASGREKAKKFYESALRL-EPGYLGAALALAELHVIEGR-NGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
.. |+.+.|...|.+|++. .+....++...|.+....|+ ++.|.++|+.+++..|++ ..|...+......|+.+.|.
T Consensus 446 R~-~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RI-QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HH-HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 87 9999999999999987 44556778888888877765 899999999999999977 77889999999999999999
Q ss_pred HHHHHHHhcCC---ccHHHHHHHHHHHHhcc
Q 008550 506 SHYEAALRINS---QNEAAKKGLERLEKQMK 533 (561)
Q Consensus 506 ~~~~~al~~~p---~~~~~~~~l~~l~~~~~ 533 (561)
.+|++++...| ....+|.....+....|
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999988 57788888888888776
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=4e-19 Score=169.47 Aligned_cols=293 Identities=13% Similarity=0.024 Sum_probs=176.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYM 286 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 286 (561)
....|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...|... .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45567788888888888888888888766442 2566778888888888888888888887655432 235
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC-----hhH
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSID--------PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-----IPG 352 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~~~ 352 (561)
..+|.++...|++++|+..+++++... |....++..+|.++.. |++++|..++++++...+.. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667777777777777777777776643 1223455566666666 77777777777776665532 234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQ-----GLVHSYLQFSKVKEALYAAREAMKAMPQS----AKAL 420 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~ 420 (561)
+..+|.++...|++++|...+++++...+. . ..+. .++.++...|++++|...+++++...|.. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 556666666666666666666666655221 1 1111 23344556666666666666665544432 2234
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~ 494 (561)
..++.++... |++++|...+++++...+.. ..++..+|.++...|++++|...+++++...+... ....
T Consensus 257 ~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----~~~~ 331 (373)
T 1hz4_A 257 RNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----FISH 331 (373)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----CCHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc----HHHH
Confidence 5556666665 66666666666665543211 12455556666666666666666666665543321 1112
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCc
Q 008550 495 FAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+...| +.....+++.+...|-
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHcc--HHHHHHHHHHHhCCCC
Confidence 22222 4455555666665554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=6.3e-19 Score=168.09 Aligned_cols=268 Identities=14% Similarity=0.050 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-----HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH------
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-----YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------ 317 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 317 (561)
..++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 467788999999999999999999999998876532 577889999999999999999999998765442
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHHHHHhccC--------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----
Q 008550 318 EVFVALSVLWER-KDERGALSYAEKSIRIDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----- 383 (561)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 383 (561)
.++..+|.++.. |++++|+..+++++...+ ....++..+|.++...|++++|...+++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346788999988 999999999999998752 234567889999999999999999999999987652
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CHHHHH-----HHHHHHhhhcCChHHHHHHHHHHHHhCCCC----
Q 008550 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALK-----LVGDVHASNASGREKAKKFYESALRLEPGY---- 451 (561)
Q Consensus 384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 451 (561)
.++..+|.++...|++++|...+++++...+. .+..+. ..+.++... |++++|...+++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcchhh
Confidence 35788999999999999999999999886432 211221 344557777 99999999999998877653
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
...+..++.++...|++++|...+++++...+. . .++..+|.++...|++++|...+++++.+.+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 235678999999999999999999999876532 1 57888999999999999999999999987653
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=6.8e-20 Score=187.47 Aligned_cols=186 Identities=10% Similarity=-0.076 Sum_probs=165.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR--------SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..++++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34778888777766 77899999999999999 88899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHH
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (561)
+++.+|+.+|.++.. |++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++ .+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 999999999999998 999999999999999999999999999999999999999 99999999999987 668999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
+...|++++|+..|+++++.+|++..++..+|.++... ++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~-~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG-RS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc-CC
Confidence 99999999999999999999999999999999998765 55
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=6.3e-20 Score=187.72 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=165.2
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH--------hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSI--------RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
..+|+++.+++..+ .. |++++|+..+++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888777766 44 99999999999999 88899999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
++ .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++ +..|+++++++|+++.+++++|.
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 87 67999999999999999999999999999999999999999999998 99999 99999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
++...|++++|+..|+++++.+|+. .++..+|.++...|+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999987 889999999877665
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=1e-19 Score=157.42 Aligned_cols=171 Identities=11% Similarity=0.058 Sum_probs=121.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE----------------MAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.+..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3455888888888888888888888888888888888 777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. | +...+...+.+++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 777777777777777777777777777777777777777777777654 3 334555666665432221 234566677
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChHHHHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGL 389 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 389 (561)
++...|++++|+..|+++++++|+..+...+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777777777777777766443333
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1e-19 Score=166.54 Aligned_cols=239 Identities=10% Similarity=0.011 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+|.+++.++-+.-+.....+ .++.. +++++|+..|.++ |.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655432222 11122 1477788777776 45677788888888888888
Q ss_pred HhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhc-CChhHHHHHHHH
Q 008550 310 LSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSM-KRPEAAVIAFRG 375 (561)
Q Consensus 310 ~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~ 375 (561)
+.+.+.. +.++..+|.++.. |++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 7764321 4578888888888 88888888888888877653 35788899999996 999999999999
Q ss_pred hHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHhhhcCChHHHHHHH
Q 008550 376 AQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-------ALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 376 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
++++.|.. .++..+|.++...|++++|+..|++++...|++.. ++..+|.++... |++++|+.+|
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~ 222 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTL 222 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 99986642 35788999999999999999999999999887643 678899999998 9999999999
Q ss_pred HHHHHhCCCCHHH-----HHHHHHHHH--HcCChHHHHHHHHHHHhhCCCh-HHHHHH
Q 008550 442 ESALRLEPGYLGA-----ALALAELHV--IEGRNGDAVSLLERYLKDWADD-SLHVKL 491 (561)
Q Consensus 442 ~~a~~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~-~~~~~l 491 (561)
+++++++|+.... +..++..+. ..+++++|+..|++++.++|.. .++..+
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 9999999886553 344555554 4577999999999988888765 343333
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=4.4e-20 Score=150.18 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=88.2
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
||.++.. |++++|+..+++++...|.++..++.+|.+|...|++++|+..|+++++++|++ .+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 4555555 666666666666666666666666666666666666666666666666666665 44666666666666666
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF-YESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
+|+..|+++++.+|+++.++..+|.++... |++++|... ++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666666665 666554443 366666666666666666666655553
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=2.6e-20 Score=151.49 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=125.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 66677788899999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHH-HHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSY-AEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
|+..|+++++++|+++.++..+|.++.. |++++|... ++++++++|+++.++..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999998888 888876665 588999999999998888888887775
No 91
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.9e-17 Score=149.82 Aligned_cols=241 Identities=12% Similarity=0.047 Sum_probs=149.7
Q ss_pred HHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 226 IASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 226 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
...|.++ +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456655 67888888888888888888888877776655 567777777777777777777777777777
Q ss_pred hcCC--HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC-HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 295 VKCD--YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 295 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
..+. +++++.++.++++.+|.+..+|...+.+... |. +++++.++.+++..+|.+..+|..++.++...+....+-
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 7663 6677777777777777777777777776666 65 467777777777777777777777766665552210000
Q ss_pred HHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC----------ChHHHHHH
Q 008550 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----------GREKAKKF 440 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~~A~~~ 440 (561)
+. + -...+.++++++++.+++..+|++..+|+.+..++....| .+++++++
T Consensus 200 ----------~~-------~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 200 ----------PQ-------G--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred ----------cc-------c--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 00 0 0000335566666666666666666666544444333212 24666777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCCCh
Q 008550 441 YESALRLEPGYLGAALALAELHV---IEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+.++++..|++...+..++.+.. ..|..++...++.++++++|..
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 77777777766544444433322 2455666677777777777655
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=1e-18 Score=148.55 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence 33333344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
|+..+++++...|.++.++..+|.++.. |++++|+.++++++...|
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4444444444444444444444444433 444444444444444333
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=1.1e-18 Score=148.32 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=127.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 34457777777888888888887777777777777778888888888888888888887777777777777777777777
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++++|...+++++...|.++.++..+|.++.. |++++|+.++++++...|.++.++..+|.++...|++++|+..++++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777 77777777777777777777777777777777777777777777777
Q ss_pred HHhCCCh
Q 008550 377 QELRPDL 383 (561)
Q Consensus 377 ~~~~~~~ 383 (561)
++..|++
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 7766554
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=8.7e-17 Score=145.49 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC----------HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--hh
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KD----------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--PE 367 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 367 (561)
+|+..+.+++..+|++..+|...+.++.. +. +++++.+++.++..+|++..+|...+.++...++ ++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 45555555555555555555555555444 32 5677888888888888888888888888877774 77
Q ss_pred HHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-------------C
Q 008550 368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------------S 432 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------------~ 432 (561)
+++.++.++++.+|.+ .+|...+.+....|. +++++.++.++++.+|.+..+|..++.++.... +
T Consensus 128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~ 207 (331)
T 3dss_A 128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 207 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH
Confidence 8888888888888876 668888888888787 588888888888888888888888888877651 3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCChHHHHHHHHHHH-----
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIE-----------GRNGDAVSLLERYLKDWADDSLHVKLAQVFA----- 496 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~----- 496 (561)
.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++ .|..++.+..
T Consensus 208 ~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~ 286 (331)
T 3dss_A 208 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALD 286 (331)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhc
Confidence 478999999999999999999998777776665 45789999999999999987 2333333322
Q ss_pred HcCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEAALRINSQNEAAKKGLER 527 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 527 (561)
..|..++...++.+.+++||-...-|..+..
T Consensus 287 ~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 287 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp TTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3578899999999999999998888777654
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=3.4e-18 Score=149.99 Aligned_cols=187 Identities=13% Similarity=-0.018 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh---hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH----HHH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQ 387 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 387 (561)
++..++.+|..+.. |++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46677888888887 888888888888888887764 5788888888888888888888888888888762 577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH------------
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA------------ 455 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------------ 455 (561)
.+|.++...|.. ....+..++..+... |++++|+..|+++++..|+++.+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 788877764311 001122223333333 555555555555555555554332
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 456 -----LALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 456 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
..+|.++...|++++|+..|+++++..|++ .++..+|.++..+|++++|++.++++....|++.
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 578999999999999999999999999875 6899999999999999999999999999888764
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=1.2e-18 Score=159.23 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC------
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR------ 380 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 380 (561)
.+.++..+|.++.. |++++|+.++++++... |....++..+|.++...|++++|+..+++++...
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34555666666666 66666666666666542 3344566667777777777777777777766652
Q ss_pred --CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh--
Q 008550 381 --PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSAKALKLVGDVHASNASGREKAKKFYESALRL-- 447 (561)
Q Consensus 381 --~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-- 447 (561)
|.. .++..+|.++...|++++|+..+++++.. .|....++..+|.++... |++++|+.+++++++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 222 34667777777777777777777777776 555566777777777777 7777777777777765
Q ss_pred -------CCCCHHHHHHHHHHHHHcCChHHHHH------HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 448 -------EPGYLGAALALAELHVIEGRNGDAVS------LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 448 -------~p~~~~~~~~la~~~~~~g~~~~A~~------~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
.+.....+..++......+....+.. .++......|.. .++..+|.++...|++++|..+|+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444566666666665554433332 222221122222 6778888888888888888888888877
Q ss_pred cC
Q 008550 514 IN 515 (561)
Q Consensus 514 ~~ 515 (561)
..
T Consensus 281 ~~ 282 (283)
T 3edt_B 281 NR 282 (283)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=2.8e-17 Score=149.15 Aligned_cols=252 Identities=13% Similarity=0.039 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
.++..+..+....+..++|+..+.+++.++|++..+|...+.++...| .+++++..+..++..+|++..+|...+.++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444444444444455566777777777777777777777777777776 3777777777777777777777777666665
Q ss_pred h--c-CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 329 R--K-DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 329 ~--~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
. + ++++++.++.+++..+|++..+|..++.+....|.++.+ . ...+.+++++
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~-------------~------------~~~~~eELe~ 189 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI-------------S------------EAQWGSELDW 189 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-------------C------------HHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc-------------c------------hhhHHHHHHH
Confidence 5 4 566666666777666666666666666666665555400 0 0001145555
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCC-------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASG-------REKAKKFYESALRLEPGYLGAALALAELHVIEGRN---------- 468 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~---------- 468 (561)
+.++++.+|.|..+|..++.++... +. ++++++++.+++..+|++..+|..+..++...|+.
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l-~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSR-PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTS-TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 5555555555555555555555544 33 35555555555555555555555555555554443
Q ss_pred ----------HHHHHHHHHHHhhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCccHHHHHHHHH
Q 008550 469 ----------GDAVSLLERYLKDW-------ADDSLHVKLAQVFAATNMLQEALSHYEAAL-RINSQNEAAKKGLER 527 (561)
Q Consensus 469 ----------~~A~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 527 (561)
..-......++... +.+.++..++.+|...|+.++|.++|+... +.+|-...-|....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 11111111111111 122567777777777777778888777775 567776666655544
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=1.1e-17 Score=146.73 Aligned_cols=183 Identities=13% Similarity=0.015 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH---HHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---YMDEYA 290 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~ 290 (561)
..+..|..++..|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++.+|+++. +++.+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34566999999999999999999999998876 478999999999999999999999999999999864 788889
Q ss_pred HHHHhc------------------CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh
Q 008550 291 MLLKVK------------------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP 351 (561)
Q Consensus 291 ~~~~~~------------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 351 (561)
.++... |++++|+..|+++++.+|+++.++..+..+... +. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-----------------LAK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------HHH
Confidence 888764 455666666666666666555443322211111 00 011
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (561)
....+|.++...|++++|+..|+++++..|++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 23578999999999999999999999999886 468899999999999999999999998888865
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=6.3e-19 Score=161.04 Aligned_cols=225 Identities=17% Similarity=0.159 Sum_probs=132.4
Q ss_pred HHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCChHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEY 289 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l 289 (561)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++++.. |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888888873 24456777888888888888888888888887662 3344566666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSID-----PSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
|.++...|++++|+.++++++... ++ +|....++..+|.++...|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKF------------------------------HPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCC------------------------------ChHHHHHHHHHHHHHHHcC
Confidence 666666666666666666665541 11 1223344445555555555
Q ss_pred ChhHHHHHHHHhHHh--------CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---------MPQSAKALKLVGDV 426 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~ 426 (561)
++++|+..+++++.. .|.. .++..+|.++...|++++|+..+++++.. .+.....+..++..
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555555555544 2222 23555566666666666666666655554 33344455555555
Q ss_pred HhhhcCCh------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 427 HASNASGR------EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 427 ~~~~~~~~------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
.... +.. ..+...++......|..+.++..+|.++...|++++|+.+++++++.
T Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESK-DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTT-CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4443 332 23333333322233445567778888888888888888888888764
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.3e-18 Score=136.36 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=103.5
Q ss_pred HHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHH
Q 008550 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLH 488 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 488 (561)
..++|+.+..+..+|..+... |++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|+. .++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKK-GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 346787888888888888887 889999999999988888888888889999999999999999999998888877 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
+.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999988887763
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=2e-18 Score=144.99 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=108.6
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
|.....++.+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 3444556666666666677777777777666666665 4566666777677777777777776666666 6655554443
Q ss_pred HHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHH
Q 008550 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~ 502 (561)
+.....+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|+. .++..+|.++...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 322111333456777777777777777777777777777777777777777777777653 46777777777777777
Q ss_pred HHHHHHHHHHh
Q 008550 503 EALSHYEAALR 513 (561)
Q Consensus 503 ~A~~~~~~al~ 513 (561)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777777654
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=1.2e-16 Score=144.97 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHH
Q 008550 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221 (561)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (561)
.++..+..+....+..++|+..+.+++..+|.+..+|...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R---------------------------------------- 94 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYR---------------------------------------- 94 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHH----------------------------------------
Confidence 3344444445555666788888888888888888888665
Q ss_pred HHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASN-DYKGGLELFAELLQRFPNNIHILLEMAKVDAII-G-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+.++...| .+++++..+.+++..+|++..+|..++.++... + ++++++.++.++++.+|.+..+|...+.++...|.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 55555566 588888888888888888888888888888887 7 78888888888888888888888888888888777
Q ss_pred Hh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC-------HhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 299 YS--------KLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-------ERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 299 ~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
++ +++++++++++.+|.+..+|...+.++.. ++ ++++++++++++..+|.+..+|..+..++..
T Consensus 175 ~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 175 LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 77 78888888888888888888888887777 65 5778888888888888888888777777766
Q ss_pred cCCh
Q 008550 363 MKRP 366 (561)
Q Consensus 363 ~~~~ 366 (561)
.|+.
T Consensus 255 ~~~~ 258 (349)
T 3q7a_A 255 FSLP 258 (349)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=2.8e-18 Score=144.09 Aligned_cols=159 Identities=9% Similarity=-0.044 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (561)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555555555555555555555555 44443333322211
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
++..+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. .++..++.++...|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 223344555555555555555555555555555555555555555555555542 2455555555555555555555
Q ss_pred HHHHH
Q 008550 406 AREAM 410 (561)
Q Consensus 406 ~~~~~ 410 (561)
|++++
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=5e-18 Score=156.55 Aligned_cols=188 Identities=9% Similarity=0.026 Sum_probs=125.3
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC---h----HHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---L----RSYQGLVH 391 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~~l~~ 391 (561)
++.. |++++|+..|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++++.+. . .++..+|.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334 55555555555555443321 235566677777777777777777777766322 1 34677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALA 459 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la 459 (561)
+|.. |++++|+.+|++++...|.. ..++..+|.++... |++++|+.+|++++.+.|.+ ..++..+|
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 8877 88888888888888776543 56778888888887 88888888888888875543 23667788
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCc
Q 008550 460 ELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFAATNMLQEALSH--YEAALRINSQ 517 (561)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 517 (561)
.++...|++++|+..|++++ ..|.. .....++..+ ..|+.+.+... |..+..++|.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~~ 266 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDND 266 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhHH
Confidence 88888899999999999988 77743 2445555555 56666554442 3444444443
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=1e-17 Score=131.34 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=72.6
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|+....+..+|..++..|++++|+..|+++++.+|.+ .+|..+|.++..+|++++|+..++++++.+|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3455555666666666666666666666666666666655 345666666666666666666666666666666666666
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
+|.++... |++++|+..|+++++++|+++.++..++.+
T Consensus 87 lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666665 666666666666666666666666555544
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=1e-16 Score=145.99 Aligned_cols=168 Identities=7% Similarity=-0.060 Sum_probs=151.4
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
..|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999666666666
Q ss_pred HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCH
Q 008550 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKV 399 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 399 (561)
+..+.. ++.+.|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ .++..++.++...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 666666 888899999999999999999999999999999999999999999999999886 3588899999999999
Q ss_pred HHHHHHHHHHHH
Q 008550 400 KEALYAAREAMK 411 (561)
Q Consensus 400 ~~A~~~~~~~~~ 411 (561)
++|...|++++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998888765
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=8.4e-17 Score=146.49 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVH 391 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~ 391 (561)
|.+++.+..+|..+.. |++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+... ....+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 6666667777776666 77777777777777777777777777777777777777777777777777775532 444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChH
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRNG 469 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~ 469 (561)
.+...++.++|+..+++++..+|+++.+++.+|.++... |++++|+..|.++++.+|++ ..++..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 566666666677777777777777777777777777776 77777777777777777766 566677777777777777
Q ss_pred HHHHHHHHHHh
Q 008550 470 DAVSLLERYLK 480 (561)
Q Consensus 470 ~A~~~~~~~~~ 480 (561)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77776666653
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=6.6e-18 Score=136.11 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++++..+|+++.+++.+|.++... |++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 4445556666666666666666666 666666666666666666666666666666666666666666666666666655
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.+++.+|.++..+|++++|+.+|++++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 6666666666666666666666666666666654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=8.9e-17 Score=148.15 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=174.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
..|++.+|..+++++.+..+.. ++. .+++++|...|.++ +.++...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4588899999999998876642 111 57888888888876 5678888999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHH
Q 008550 306 VHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 306 ~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
|.+++...+.. ..++..+|.++.. |++++|+.+|++++.+.+.. ..++..+|.+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99988875433 4578889999998 99999999999999875432 3578899999999 999999999
Q ss_pred HHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHH
Q 008550 373 FRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKK 439 (561)
Q Consensus 373 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~ 439 (561)
|++++.+.|.. .++..+|.++...|++++|+..|++++...|.+ ..++..+|.++... |++++|+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99999986532 358899999999999999999999999986644 34778899999998 99999999
Q ss_pred HHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHH
Q 008550 440 FYESALRLEPGYLG-----AALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 440 ~~~~a~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 473 (561)
+|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 9987643 233445444 5666554444
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=5.8e-16 Score=134.04 Aligned_cols=187 Identities=12% Similarity=0.013 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 008550 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS----KVKEALYAAREA 409 (561)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~ 409 (561)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+.. +..+++.+|.+|.. + ++++|+.+|+++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 566777777754 567788888888888888888888888877652 33667788888877 6 788888888888
Q ss_pred HHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 008550 410 MKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEP--GYLGAALALAELHVI----EGRNGDAVSLLERYL 479 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~ 479 (561)
.+ +.++.+++.+|.++.. . +++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++.
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 5678888888888886 5 788999999999888877 347888899999988 788999999999998
Q ss_pred hhCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 480 KDWADDSLHVKLAQVFAAT-N-----MLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 480 ~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
+..++...++.+|.+|..- | ++++|+.+|+++.+.. ++.+...+..+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 8844557888899988764 3 8999999999998874 566666666554
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=3.7e-17 Score=143.39 Aligned_cols=221 Identities=12% Similarity=-0.010 Sum_probs=120.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH-HH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-------AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YA 290 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~ 290 (561)
|-.|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+++.+.+.|....+++. .|
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3334433 35555555555555555555555555555 455555555555555555555555554332222 00
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (561)
. | |+ +... -...++...++.++.. |++++|.+.|..++...|.+. ..+.+|.++.+.+++++
T Consensus 90 ~-y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 90 L-Y---GD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTD 153 (282)
T ss_dssp T-T---CC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHH
T ss_pred c-c---cc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHH
Confidence 0 0 00 0000 0001233445555555 666666666666666666555 66666666666666666
Q ss_pred HHHHHHHhHHhCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHhhhcCChHHHHHHHH
Q 008550 369 AVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQ-SAKALKLVGDVHASNASGREKAKKFYE 442 (561)
Q Consensus 369 A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (561)
|+..|+.+....+. ..+++.+|.++..+|++++|+..|++++... |. .+.+++.+|.++..+ |+.++|...|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 66666655443211 1346666666666666666666666665332 33 445666666666666 67777777777
Q ss_pred HHHHhCCCCHHHHHHH
Q 008550 443 SALRLEPGYLGAALAL 458 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~l 458 (561)
+++..+|+ +.+...|
T Consensus 233 ~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 233 WLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHSCC-HHHHHHH
T ss_pred HHHhcCCc-HHHHHHH
Confidence 77666666 5555444
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=3.8e-17 Score=131.65 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred HHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
.+++++.++|++ .+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++... |++++|+.+|+++++++|+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCCC
Confidence 355566677776 56888888888888888888888888888888888888888888887 8888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
++.+++.+|.++..+|++++|+..|+++++..|++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888888888764
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.6e-16 Score=160.07 Aligned_cols=163 Identities=10% Similarity=0.052 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc---CChhHHHHHHHHhHHhCCCh
Q 008550 308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~ 383 (561)
++++.+|+++.++..+|.++.. |++++|+..++++++.+|++..++..+|.++... |++++|...++++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 9999999999999999999999999999999999 99999999999999998886
Q ss_pred -HHHHHHH
Q 008550 384 -RSYQGLV 390 (561)
Q Consensus 384 -~~~~~l~ 390 (561)
..+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 4454444
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=8.6e-17 Score=141.08 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=108.8
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHH----HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH--------
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYV----EAQCCIASNDYKGGLELFAELLQRFPNNIHILLE-------- 254 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 254 (561)
..++...+...+.+.....| .....|..+.. .+.++...+++.+++..+++.+...|.....++.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 55556666665555554443 23444443311 1456667777888888888888887776443333
Q ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH
Q 008550 255 -------------MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (561)
Q Consensus 255 -------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (561)
++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+.+....+...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~---- 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL---- 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc----
Confidence 55555666666666666665555555555 555555555555555555555554433211100
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CC-h-HHHHHHHHHHHhcC
Q 008550 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PD-L-RSYQGLVHSYLQFS 397 (561)
Q Consensus 322 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~-~~~~~l~~~~~~~~ 397 (561)
...+++.+|.++..+|++++|+..|+++.... |. . .+++.+|.++..+|
T Consensus 170 ---------------------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 170 ---------------------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred ---------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 01244555555555555555555555554322 32 2 34555555555556
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
+.++|...|++++..+|+ ..+...+
T Consensus 223 r~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666555555 4444433
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=1.3e-16 Score=160.81 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=127.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999998887 5688899999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCh
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|...++++++..|..
T Consensus 83 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999988 9999999999999999999989999999999999 89999999999999988876
Q ss_pred -HHHHHHH
Q 008550 486 -SLHVKLA 492 (561)
Q Consensus 486 -~~~~~la 492 (561)
..+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 5555444
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=4.3e-18 Score=158.57 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=143.3
Q ss_pred cCHhHHHHHHHH----HHhccCCChhHHHHHHHHHH------------hcCChhHHHHHHHHhHHhCCCh-HHHHHHHHH
Q 008550 330 KDERGALSYAEK----SIRIDERHIPGYIMKGNLLL------------SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (561)
Q Consensus 330 ~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (561)
+.+++|+..+.. ++.+.|.. ++...|.... .++++++|+..+++++...|.. .++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 345555555555 55555554 3333333221 4566777777777777777765 567888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
+...|++++|+..|++++...|++ ..++.++|.++... |++++|+.+|+++++++|+++.+++.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 888888888888888888888887 68889999999988 99999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCC
Q 008550 458 LAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEA-LSHYEAALRINS 516 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 516 (561)
+|.++..+|++++|+..|+++++..|++ .++..++.++...|++++| ...|++++...+
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998877 7888999999999999888 567777766533
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=2.9e-15 Score=129.61 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
+.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|..+ ++++|+.+|+++. .+.++.+++.+|.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV--EAGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 333333333333334444444444333332 2334444444444332 4444444444443 2334445555555
Q ss_pred HHHh----cCChhHHHHHHHHhHHhCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 359 LLLS----MKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 359 ~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
+|.. .+++++|+.+|+++.+..|. ..+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 5544 45555555555555555443 2345555555555 45555555555555554 44444555555555
Q ss_pred hhhcC-----ChHHHHHHHHHHHHh
Q 008550 428 ASNAS-----GREKAKKFYESALRL 447 (561)
Q Consensus 428 ~~~~~-----~~~~A~~~~~~a~~~ 447 (561)
....| ++++|+.+|+++.+.
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 43212 455555555555554
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=7.2e-17 Score=130.57 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=92.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..|++++..+|++...++.+|.++... |++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 346666777777777777777777776 7777777777777777777777777777777777777777777777777777
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
++ .+++.+|.++...|++++|+.+|+++++++|+++.......++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 66 777777788888888888888888888777766555444444433
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=9.3e-18 Score=156.32 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=129.2
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY 393 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~ 393 (561)
+++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+ .++.++|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777777777777777777777777777777765 5689999999
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-H
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-V 472 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A-~ 472 (561)
...|++++|+..|++++..+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHh
Q 008550 473 SLLERYLK 480 (561)
Q Consensus 473 ~~~~~~~~ 480 (561)
..|++++.
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.68 E-value=2.8e-15 Score=133.29 Aligned_cols=243 Identities=15% Similarity=0.084 Sum_probs=162.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
..-.+..|+|..++.-.. +..|.+ ....+.+.++|+.+|++.... ..+....+...++..+. +.
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc--
Confidence 666778899998888433 333433 355666778888888877421 11112223344444332 22
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
|+..+++.+...+.+...+..+|.++.. |++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777887777665666666778888877 888888888888877776 667777888888888888888888888887
Q ss_pred HhCCC-----hHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 378 ELRPD-----LRSYQGLVHS--YLQFS--KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 378 ~~~~~-----~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+.+|+ +.....++.. ....| ++.+|..+|+++....|+ .+..+++ ++..+ |++++|...++.+++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~-g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ-RNIAEAQGIVELLLS 239 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH-TCHHHHHHHHHHHHS
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc-CCHHHHHHHHHHHHH
Confidence 77772 4444444333 44445 777888888887777665 2233333 66666 788888887776666
Q ss_pred h----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 447 L----------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 447 ~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
. +|+++.++.+++.+....|+ +|.++++++.+..|++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 36677777777777777776 67777777777777663
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=4.4e-15 Score=118.47 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
+++.+|.++...|++++|+..+++++...|.++..+..+|.++... |++++|+..+++++...|.++.++..+|.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777776 777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 465 EGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.|++++|+..+++++...|.. .++..+|.++...|++++|...+++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777888877777777777655 67777788888888888888888888777775
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=3.8e-16 Score=141.55 Aligned_cols=195 Identities=14% Similarity=0.043 Sum_probs=100.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+...+..+|..+...|++++|+..|++++..+|.+..++..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------- 44 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------------------------------------- 44 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH--------------------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH--------------------------------------
Confidence 445556666666666666666666666666666655555444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+........ ..
T Consensus 45 --a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~ 119 (281)
T 2c2l_A 45 --ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RI 119 (281)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HH
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HH
Confidence 5555566666666666666666666666666666666666666666666666666665544222111111111 11
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 378 (561)
.++...........|.++.+...++.+. .|++++|++.++++++.+|.+......++.++... +.+++|...|.++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~l~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 120 AKKKRWNSIEERRIHQESELHSYLTRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHHHHHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112222222234444444444444432 25555555555555555555444444444444333 444555555554443
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.67 E-value=2.1e-16 Score=127.83 Aligned_cols=118 Identities=12% Similarity=-0.017 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 008550 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS 315 (561)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 315 (561)
..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777777777777888888888888888888888888888888777888888888888888888888888777777
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY 353 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 353 (561)
++.+++.+|.++.. |++++|+..|++++++.|.++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 77777777777777 777777777777777777766543
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.67 E-value=3e-14 Score=126.67 Aligned_cols=249 Identities=10% Similarity=0.025 Sum_probs=190.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHH
Q 008550 257 KVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGA 335 (561)
Q Consensus 257 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 335 (561)
+-.+..|+|..++... -+..|.+. .......+++..+|++.... . .+....+...++..+. ++ |
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~-~~---a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD-TK---N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT-TT---C
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc-cc---H
Confidence 3456789999999844 34455543 45566778888899887421 1 1112223444444332 22 8
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC--Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP--DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
+..+++.+...+.....+..+|.++...|++++|+.++.+.+..+| .. +++..++.++...|+.+.|.+.++++.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8999998887666677788999999999999999999999988887 44 67889999999999999999999999999
Q ss_pred CCC------CHHHHHHHHHHHhhhcC--ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 008550 413 MPQ------SAKALKLVGDVHASNAS--GREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKD- 481 (561)
Q Consensus 413 ~p~------~~~~~~~l~~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 481 (561)
+|+ .......-+++.... | ++.+|...|+++....|+ .+..+++ ++..+|++++|...++.+++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~-g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFAT-NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred CccccccchHHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 983 233333345556655 5 899999999999888886 2334343 899999999999999988876
Q ss_pred ---------CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 482 ---------WADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 482 ---------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.|++ .++.+++.+...+|+ +|.++++++.+.+|+++.+.....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 3656 788899999999998 899999999999999998765443
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=5.1e-16 Score=140.72 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|.++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 326 LWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
++.. |++++|+..|++++.++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 6666 66666666666666666544
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=3.5e-16 Score=125.94 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
|++++..+|++...++.+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3444444555555555555555554 555555555555555555555555555555555555555555555555555544
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.+++.+|.++...|++++|+.+|+++++++|+++.......
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 45555555555555555555555555555555444433333
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=1.1e-14 Score=116.03 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K 330 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 330 (561)
++.+|.++...|++++|+..++++++.+|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++.. |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444444 4
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444443
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.66 E-value=1.8e-12 Score=126.49 Aligned_cols=346 Identities=10% Similarity=-0.000 Sum_probs=231.7
Q ss_pred CCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCC-hhhHHHHHHHHHhc---CCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 122 GETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 122 ~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
|+++.+..+|++. ...| +.+.|........+.+. .+.....|+.++.. +|.+...|...+........
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~------ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED------ 100 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS------
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh------
Confidence 7789999999984 4345 77888887777776663 46677888988864 67788888877665432110
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH-------------HHh
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHI-LLEMAKVD-------------AII 262 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~-------------~~~ 262 (561)
.+|+.+.+..+|++++...+.+..- |......- ...
T Consensus 101 ------------------------------~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 101 ------------------------------EQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------------------------------hhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 1244555666666666532222211 11111110 111
Q ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh
Q 008550 263 GKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKC--D-----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER 333 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 333 (561)
+.+..|...++.+....+. +...|..+...-...+ - ......+|++++...|..+.+|...+..+.. |+.+
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 2334445555554443222 3345555444432211 0 3456778999999999999999999998888 9999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--------C-C-h-HHHHHHHHHHHhcCCHHHH
Q 008550 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--------P-D-L-RSYQGLVHSYLQFSKVKEA 402 (561)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-~-~~~~~l~~~~~~~~~~~~A 402 (561)
+|...|++++.. |.+...+...+... .. ++....+....... + . . ..|...+....+.+..+.|
T Consensus 231 ~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 231 KAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999 98877776554431 11 11111111111000 1 1 1 3477788888888899999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
..+|.++ ...+.....|...+.+-....++.+.|...|+.+++..|+.+..+...+......|+.+.|..+|+++.
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--- 381 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE--- 381 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 9999999 433345667777777766663479999999999999999999988888998999999999999999972
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
....+|......-...|+.+.+.+.+++++.
T Consensus 382 k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2337888888888889999999999999885
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4e-15 Score=117.06 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV 494 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~ 494 (561)
.+..+..+|..+... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ .+++.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 455667777777776 777777777777777777777777777777777777777777777777777765 677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhc
Q 008550 495 FAATNMLQEALSHYEAALRIN------SQNEAAKKGLERLEKQM 532 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~l~~~~ 532 (561)
+...|++++|+..|+++++++ |+++.++..+..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 777777777787787777777 77777777777766543
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=9.1e-16 Score=123.53 Aligned_cols=120 Identities=15% Similarity=0.032 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|++++..+|+++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555666666667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
+.+++.+|.++.. |++++|+..|++++.+.|.++......
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 7777777777766 777777777777777766665554433
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=2.4e-15 Score=126.46 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRN--GD 470 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~ 470 (561)
...|++++|+..+++++..+|+++.++..+|.++... |++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666677777777777777777777777777766 777777777777777777777777777776 6666776 77
Q ss_pred HHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 471 AVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 471 A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
|+..++++++..|++ .++..+|.++...|++++|+..|+++++.+|+++.....+..+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 777777777776655 6667777777777777777777777777777665444433333
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.7e-14 Score=125.30 Aligned_cols=97 Identities=22% Similarity=0.091 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
++.+|.++...|++++|+..|++++ .|...++..+|.++...|++++|+..|++++..+|+++.++..+|.++... |
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-E 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-c
Confidence 4555666666666666666666653 344455666666666666666666666666666666666666666666665 6
Q ss_pred ChHHHHHHHHHHHHhCCCCH
Q 008550 433 GREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~ 452 (561)
++++|+..|+++++..|.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCS
T ss_pred cHHHHHHHHHHHHHhCCCcc
Confidence 66666666666666555544
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=8.4e-16 Score=152.29 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC----------hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC--C
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR----------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS--K 398 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~ 398 (561)
.++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++ .+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3467788888888888888888888777777766 666666666666666665 45666666666666 5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNAS-GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+++++..+.++++.+|.+..+|...+.++... | .++++++++.++++.+|.+..+|...+.++...++..++
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~------ 197 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS------ 197 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS------
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc------
Confidence 56666666666666666666666666666665 5 666666666666666666666666666666554222000
Q ss_pred HHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 478 YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 478 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.+.. -...+.+++|++++.+++.++|++..+|..+..+....+
T Consensus 198 ----~~~~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 198 ----GPQG---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp ----SSCC---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ----cccc---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0000 000133566666666666666666666666666665543
No 134
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.62 E-value=7.4e-15 Score=114.29 Aligned_cols=145 Identities=36% Similarity=0.542 Sum_probs=114.3
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCC-chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN 80 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (561)
=.++++++.+++.+.|+.|+.+++++++...++++. ++..++++++++|+++|.+|+|.+|...|+++++.....++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358999999999999999999999999997666654 8999999999999999999999999999999999876555444
Q ss_pred ccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q 008550 81 STSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (561)
Q Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 152 (561)
... +.+ +.....++. ...+.+.+++|++|.|+.+.|++++|+..++.|+...+.+.+.+.||++|.
T Consensus 101 s~~--~~~--~~~ss~p~s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 101 KVR--PST--GNSASTPQS--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred Ccc--ccc--cccCCCccc--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 321 111 111111111 123468899999999999999999999999999999999999999999874
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.61 E-value=1.3e-14 Score=121.85 Aligned_cols=130 Identities=8% Similarity=0.088 Sum_probs=114.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhcCCH--hH
Q 008550 225 CIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML-LKVKCDY--SK 301 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 301 (561)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI 354 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (561)
|+..+++++..+|+++.++..+|.++.. |++++|+..+++++...|.+.....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999999999999999988 9999999999999999998765443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=6.5e-14 Score=128.14 Aligned_cols=166 Identities=8% Similarity=0.002 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-----
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----- 416 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----- 416 (561)
....+...+..+...|++++|+..+.++++..+.. ..++.+|.++...|++++|+..+++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455667788888999999999998888876653 125568888889999999999999998765543
Q ss_pred -HHHHHHHHHHHhhhcCChHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----
Q 008550 417 -AKALKLVGDVHASNASGREKAKKFYESAL---RLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWAD---- 484 (561)
Q Consensus 417 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---- 484 (561)
..++..+|.++... |++++|+.+|++++ +..|++. .++.++|.++...|++++|+.+++++++..+.
T Consensus 154 ~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 56888999999998 99999999999998 4456543 57889999999999999999999999887543
Q ss_pred ---hHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 008550 485 ---DSLHVKLAQVFAATNMLQEA-LSHYEAALRIN 515 (561)
Q Consensus 485 ---~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 515 (561)
..+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 36889999999999999999 78899998764
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.8e-14 Score=139.76 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC-
Q 008550 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK----------VKEALYAAREAMKAMPQSAKALKLVGDVHASNAS- 432 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 432 (561)
..++|+..+.+++..+|++ .+|+..+.++...|+ +++++..++++++.+|++..+|...+.++... +
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l-~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-SS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cc
Confidence 3456788888888888887 668888888888887 88888888888888888888888888888887 8
Q ss_pred -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCH
Q 008550 433 -GREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNML 501 (561)
Q Consensus 433 -~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~ 501 (561)
++++++.++.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+ .+|..++.++...+..
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 5688888888888888888888888888888888 8888888888888888877 7888888888776443
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=1.8e-14 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~ 488 (561)
+.++..+|..+... |++++|+.+|+++++++|+++.++.++|.++..+|++++|+..+++++++.|+. .++
T Consensus 8 A~a~~~lG~~~~~~-~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ-KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34455566666665 666666666666666666666666666666666666666666666666655432 357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
..+|.++..+|++++|+++|++++...|+ ++....+..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 77888888888888888888888888774 4554444443
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=1.1e-13 Score=120.22 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
.++..|..+...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45667999999999999999999885 33 7889999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 297 CDYSKLSKLVHDLLSIDPSRP----------------EVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|++++|+..++++++..|.+. .+++.+|.++.. |++++|+..+++++...|.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999888766 788888888888 888899999998888888764
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.3e-14 Score=111.77 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH
Confidence 33555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhcC------CCCHHHHHHHHH
Q 008550 300 SKLSKLVHDLLSID------PSRPEVFVALSV 325 (561)
Q Consensus 300 ~~A~~~~~~~~~~~------~~~~~~~~~l~~ 325 (561)
++|+..++++++.+ |.++.++..++.
T Consensus 89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 89 ASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 55555555555554 444444444443
No 141
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=7.1e-15 Score=116.21 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-------CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPG-------YL-----GAALALAELHVIEGRNGDAVSLLERYLKD---- 481 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 481 (561)
..+...|..+... |++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~-g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455566666665 6666666666666666666 32 27888888888888888888888888888
Q ss_pred ---CCCh-HHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 482 ---WADD-SLH----VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 482 ---~~~~-~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+|+. .+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 8887 788 999999999999999999999999999999888777777766543
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=4e-15 Score=127.56 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA----------------KALKLVGDVHASNASGREKAKKFYESALRLEP 449 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p 449 (561)
+..+|..+...|++++|+..|++++...|.++ .++..+|.++... |++++|+.+++++++.+|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCc
Confidence 44444555555555555555555555444443 4555555555554 555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
.++.+++.+|.++...|++++|+..|+++++..|++ .++..++.++...|+..++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555544 45555555555555444444
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=1.2e-13 Score=114.63 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
.+..+|.++...|++++|+..|++++...|.++.++..+|.++... |++++|+.++++++..+|.++.++..+|.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888887 888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCh-HHH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 465 EGRNGDAVSLLERYLKDWADD-SLH--VKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~-~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|++++|+..++++++..|.+ .++ ..++..+...|++++|+..+.++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888888766 455 44444577788888888888876554
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=2e-13 Score=124.95 Aligned_cols=170 Identities=13% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
..+...+..+...|++++|+..+.++++..|.... .+..+|.++...|++++|+..+++++...+.....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---- 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---- 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch----
Confidence 34445566666666666666666666665554321 22334444444445555555555544433222000
Q ss_pred HHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH---HhCCCh-----HHHHHHHHHHHh
Q 008550 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ---ELRPDL-----RSYQGLVHSYLQ 395 (561)
Q Consensus 324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~-----~~~~~l~~~~~~ 395 (561)
.....++..+|.+|...|++++|+.+|++++ +..|+. .+++++|.+|..
T Consensus 152 -----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 152 -----------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp -----------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 0002244455555555555555555555555 222321 235555555555
Q ss_pred cCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHhhhcCChHHH-HHHHHHHHHh
Q 008550 396 FSKVKEALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKA-KKFYESALRL 447 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~~ 447 (561)
.|++++|+.++++++...++ .+.+++.+|.++... |++++| ..++++++.+
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHH
Confidence 55555555555555544321 145555566666655 666666 5555555543
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=1.3e-13 Score=114.36 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 44446666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHH--HHh-cCHhHHHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVL--WER-KDERGALSYAEKSI 343 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~A~~~~~~~~ 343 (561)
++++|+..+++++...|.++.++..++.+ +.. |++++|+..+.+..
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666666555555333332 444 55555555555543
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=6.7e-15 Score=126.11 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=102.1
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----------------HHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----------------RSYQGLVHS 392 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~ 392 (561)
|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.. .++..+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333334445555555555555555555555555554432 457888999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
+...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...++..++.
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999999999999999999999999988888877776
Q ss_pred -HHHHHH
Q 008550 473 -SLLERY 478 (561)
Q Consensus 473 -~~~~~~ 478 (561)
..+.++
T Consensus 177 ~~~~~~~ 183 (198)
T 2fbn_A 177 KLTFGGM 183 (198)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 444443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=5e-14 Score=110.44 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-------HHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-------GAALA 457 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~ 457 (561)
++..+|..+++.|++++|+..|+++++++|+++.++..+|.++... |++++|+..++++++++|++. .++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888888 888888888888888877653 46778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la 492 (561)
+|.++...|++++|++.|++++...|+++....+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 88888899999999999999988888775554443
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.56 E-value=1.6e-13 Score=113.46 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
.....++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445566688888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+...|++++|+..|+++++++|+++..+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 88888888888888888888888887666665543
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=6.6e-14 Score=110.82 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++++|+..+++++...|.++.++..++.++..
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-13 Score=108.79 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=104.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|.....++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------------------------------- 56 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR----------------------------------- 56 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH-----------------------------------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH-----------------------------------
Confidence 356778888899999999999999999999999888887777665
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...
T Consensus 57 -----a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 57 -----AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -----HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 777778889999999999999999988899999999999999999999999999999888888888888888776
Q ss_pred CC
Q 008550 297 CD 298 (561)
Q Consensus 297 ~~ 298 (561)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-14 Score=110.48 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
.++..|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555555555555555555555555555554444444445444444
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
|++++|+..+++++...|.+..++..++.++.
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=1e-13 Score=114.67 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
.+.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL 360 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 360 (561)
.++.. |++++|+.+|++++.++|++..+++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99988 9999999999999999999888776666543
No 153
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.55 E-value=8e-12 Score=121.95 Aligned_cols=362 Identities=7% Similarity=-0.033 Sum_probs=239.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC-HH
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE-TK 125 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~ 125 (561)
+..+...+-.|+++.+...|++++...| ..+++........+.+. .+
T Consensus 18 yer~l~~~P~~~~e~~~~iferal~~~p--------------------------------s~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 18 MEHARRLYMSKDYRSLESLFGRCLKKSY--------------------------------NLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTCC--------------------------------CHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHhccCC--------------------------------CHHHHHHHHHHHHHhCchHH
Confidence 3333334444889999999999998754 23455555555555543 22
Q ss_pred HHHHHHhc----CCCcccchhHHHHHHHHHH----hcCChhhHHHHHHHHHhcCCCcHHH-HHHHHHHcCCcccHhHHhh
Q 008550 126 AAIVEMEG----IPSKARNLQMSLLMAKLYR----NSRHNRGAVACYKECLRHCPFFIEA-ITALAELGATPKDIISLFA 196 (561)
Q Consensus 126 ~A~~~l~~----~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~~~ 196 (561)
.....|+. +..++.+...|......+. .+|+.+.+..+|++++..-+.+.+- |..........+ .
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-~----- 139 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN-K----- 139 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-H-----
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-c-----
Confidence 23334443 2335667788888887765 3577889999999999953333222 211111100000 0
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCC---------HH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGK---------ND 266 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~---------~~ 266 (561)
... ........+.+..|...++.+....+. +...|......- .++ ..
T Consensus 140 ----------------~~~-----~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E--~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 140 ----------------ITG-----KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE--MENGMKLGGRPHES 196 (493)
T ss_dssp ----------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH--HTCTTCCCHHHHHH
T ss_pred ----------------ccH-----HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--hcCCccCcchhhHH
Confidence 000 011111224555666666666554332 445555544432 222 34
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHh--
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-- 344 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-- 344 (561)
.....|++++...|..+..|..++..+...|+.+.|..++++++.. |.+...|...+.....+ +....+.....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999999999999999 98877777655442111 11111111110
Q ss_pred --------ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHC
Q 008550 345 --------IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-KVKEALYAAREAMKAM 413 (561)
Q Consensus 345 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 413 (561)
..+....+|...+....+.+..+.|...|.++ . .|. ...|...+.+....+ +++.|..+|+.+++..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 01112356778888888888999999999999 3 333 245666676666666 6999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
|+.+..+...+...... |+.+.|...|+++ +.....|......-...|+.+.+.+.+++++.
T Consensus 351 ~~~~~~~~~yid~e~~~-~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRI-GDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999888888888887 9999999999997 45677888888888889999999999998875
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=2.4e-13 Score=107.56 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=113.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|.++..++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------------------------- 52 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR----------------------------------- 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH-----------------------------------
Confidence 356778899999999999999999999999999999987777666
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...
T Consensus 53 -----a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 53 -----AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCH
Q 008550 297 CDY 299 (561)
Q Consensus 297 ~~~ 299 (561)
|++
T Consensus 128 ~~~ 130 (131)
T 2vyi_A 128 REA 130 (131)
T ss_dssp TTC
T ss_pred hcC
Confidence 875
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=3.3e-13 Score=123.47 Aligned_cols=159 Identities=14% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIH------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMD 287 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 287 (561)
..+..+...|++++|+..++++++..+.++. .+..+|.++...|++++|+.+|++++...+... .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467778888888888888888887766654 223467777777788888888888887544332 2466
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHH
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSID---PSR----PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGY 353 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~ 353 (561)
.+|.++...|++++|+.+++++++.. |.+ ..+++.+|.++.. |++++|+.++++++.+.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 67777777777777777777766321 111 2345555555555 55555555555555543222 3445
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhHH
Q 008550 354 IMKGNLLLSMKR-PEAAVIAFRGAQE 378 (561)
Q Consensus 354 ~~l~~~~~~~~~-~~~A~~~~~~~~~ 378 (561)
..+|.++...|+ +++|+..|++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 555555555552 3555555555544
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=1.9e-13 Score=109.25 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=84.0
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVK 490 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 490 (561)
..|.++..+..+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|++ .+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVG-RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHh-CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 3456667777777777776 777777777777777777777777777777777777777777777777777665 67777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHh
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQ-----NEAAKKGLERLEKQ 531 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~l~~~ 531 (561)
+|.++...|++++|+..|+++++++|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776 66666666665544
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.53 E-value=9.7e-14 Score=107.69 Aligned_cols=98 Identities=22% Similarity=0.183 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++... |++++|+..|+++++++|+++.++..+|.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 555666666666666666666666666666666666666666665 6666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 008550 466 GRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~ 484 (561)
|++++|+..++++++..|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 6666666666666555553
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=1.5e-13 Score=106.65 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~ 318 (561)
+++|+..++++++.+|.++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999988887643
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=1.4e-14 Score=140.94 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=77.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY 393 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~ 393 (561)
+++++|+..++.++...|.....+..+|..++..|++++|+..|+++++..|.+ .++.++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555566666666666666666666666666655543 2355555555
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
..+|++++|+..|++++..+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555 55555555555555555555555555555555555544443
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=1.7e-13 Score=113.10 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRL------------------EPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.+...|..+... |++++|+..|.+++.. +|.+..++.++|.++...|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQ-KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 344444444444 5555555555555544 566677888889999999999999999999998
Q ss_pred hCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhcc
Q 008550 481 DWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE-AAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~ 533 (561)
.+|++ .+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+...++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 88877 7889999999999999999999999999999998 77888888877654
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=5e-13 Score=103.50 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVF 495 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~ 495 (561)
+..+..+|.++... |++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666777777776 777777777777777777777777777777777777777777777777777765 6777777888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 496 AATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
...|++++|...|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 88888888888888888888888877777776653
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.51 E-value=7.9e-13 Score=103.51 Aligned_cols=114 Identities=19% Similarity=0.250 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred h-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 329 R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
. |++++|+.++++++...|.++.++..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 5 555555555555555555555555555555443
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.51 E-value=8.6e-13 Score=103.31 Aligned_cols=114 Identities=21% Similarity=0.323 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVF 495 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~ 495 (561)
...+..+|.++... |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+ .++..+|.++
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45566666666665 666666666666666666666666666666666666666666666666666544 5666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 496 AATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...|++++|..+|+++++.+|+++.++..++.+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 666667777777776666667666666666665543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.1e-13 Score=108.28 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=103.8
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
..|.+...+..+|..+... |++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++..|++ .+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3466788888888888887 88899999999988888887 7788888999999999999999999999888876 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
++.+|.++...|++++|+.+|+++++++|+++.++..+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 889999999999999999999999999999999998888886543
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=1.1e-12 Score=120.07 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=92.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHH------HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh------hHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPE------VFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMK 356 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l 356 (561)
+..+...|++++|...+++++...+..+. .+..+|.++.. +++++|+.++++++...+... .++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555666666666666666665554443 22235555555 677777777777766543322 246667
Q ss_pred HHHHHhcCChhHHHHHHHHhHHh---C-CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQEL---R-PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL 422 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~---~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 422 (561)
|.+|...|++++|+.+|+++++. . ... .+++++|.+|...|++++|+.+++++++..+.. +.+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776642 1 111 245666666666666666666666666554322 556666
Q ss_pred HHHHHhhhcCC-hHHHHHHHHHHHHh
Q 008550 423 VGDVHASNASG-REKAKKFYESALRL 447 (561)
Q Consensus 423 l~~~~~~~~~~-~~~A~~~~~~a~~~ 447 (561)
+|.++... |+ +++|+.+|++++.+
T Consensus 242 lg~~~~~~-g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKL-EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHHH
Confidence 66666665 53 46666666666543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=4.6e-13 Score=106.98 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
+|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 325 VLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
.++.. |++++|+..|++++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 65555 6666666666666555554
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=2.6e-14 Score=138.93 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=107.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---------------MTYMDEYAM 291 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~ 291 (561)
..+++++|+..++.++...|.....+..+|.+++..|++++|+..|+++++.+|.+ ..++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888899999999999999999999999999998887 466667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
++..+|++++|+..|++++.++|+++.+++.+|.++.. |++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766 77777777777777777777777777777776666666654
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=2.6e-12 Score=99.35 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=89.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 44477888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+++|...++++++..|+++.++..++.+.
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888888888888888887777777654
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.48 E-value=2.4e-13 Score=107.47 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCC-------CH-----HHHHHHHHHHhhhcCChHHHHHHHHHHHHh------
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQ-------SA-----KALKLVGDVHASNASGREKAKKFYESALRL------ 447 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------ 447 (561)
+...|..+...|++++|+..|+++++.+|+ +. .+|.++|.++... |++++|+.+|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhcccc
Confidence 344444444445555555555555544444 22 2666666666665 6666666666666666
Q ss_pred -CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 448 -EPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 448 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+|++..+| +++|.++..+|++++|+..|++++++.|++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 66666666 666666666666666666666666666544
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=4.1e-13 Score=115.53 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=92.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhcCCH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888555444433356778888888888888888888888888773 233345667777777777777
Q ss_pred hHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC--h----hHHHHHHHHHHhcCC
Q 008550 300 SKLSKLVHDLLSI---DPSR----PEVFVALSVLWER-KDERGALSYAEKSIRIDERH--I----PGYIMKGNLLLSMKR 365 (561)
Q Consensus 300 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~ 365 (561)
++|+..+++++.. .+++ ..++..+|.++.. |++++|+.++++++...+.. + .++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776665 3322 2345555666655 66666666666655442211 1 223455555555555
Q ss_pred hhHHHHHHHHhHHh
Q 008550 366 PEAAVIAFRGAQEL 379 (561)
Q Consensus 366 ~~~A~~~~~~~~~~ 379 (561)
+++|+..+++++.+
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=7e-13 Score=109.32 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHh------------------CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
..+...|..++..|++++|+..|.+++.. .|.. .++.++|.++...|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566677777777777777777776666 3333 3466666666666666666666666666
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-GAALALAELHVI 464 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~ 464 (561)
.+|+++.+++.+|.++... |++++|+..|++++.++|+++ .+...++.+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666665 666666666666666666665 444444444433
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=1.7e-12 Score=102.34 Aligned_cols=113 Identities=18% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKL 491 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l 491 (561)
.++.+|.++... |++++|+..|+++++..|+++ .+++.+|.++...|++++|+..+++++...|++ .+++.+
T Consensus 4 ~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKN-GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 356677777776 777777777777777777776 677777888888888888888888887777753 567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 492 AQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 492 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|.++...|++++|+..|+++++.+|+++.+...+..+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887777776654
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=9.5e-13 Score=113.19 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=98.6
Q ss_pred HhcCChhHHHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHhhhcC
Q 008550 361 LSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 432 (561)
+..|++++|...++.... +|.. .++..+|.++...|++++|+..+++++.. .|....++..+|.++... |
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA-G 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-C
Confidence 345666666663333322 3322 34666666666666666666666666662 233355667777777776 7
Q ss_pred ChHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHc
Q 008550 433 GREKAKKFYESALRL---EPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD----SLHVKLAQVFAAT 498 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~la~~~~~~ 498 (561)
++++|+.++++++.. .+++ ..++..+|.++...|++++|+..+++++...+ +. .++..+|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777777766 3322 34567778888888888888888887776532 11 3567888888888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 008550 499 NMLQEALSHYEAALRINS 516 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p 516 (561)
|++++|..++++++++..
T Consensus 161 g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 888888888888887744
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=3.9e-12 Score=100.28 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 292 (561)
+..|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4458888888888888888888888888877 788888888888888888888888888888888 7778888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+...|++++|+..+++++...|+++.+......+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 88888888888888888888888876665555443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-12 Score=103.50 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.....+..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34445555777777777777777777777777765 666777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
.++...|++++|+..+++++...|+++.++..++.+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777766666665554
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4.8e-13 Score=105.50 Aligned_cols=111 Identities=20% Similarity=0.135 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR----------EKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
+.+.+++|++.++++++.+|+++.+|+++|.++... +++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445677788888888888888888888888877776 654 477777788888887777777777777777
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
+|.+ .|+. -...|++++|+++|++|++++|++...+..+...
T Consensus 93 lg~l-------------~P~~---------~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFL-------------TPDE---------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHH-------------CCCH---------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hccc-------------Ccch---------hhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6532 2221 0012456666666666666666666555555444
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.43 E-value=6.1e-13 Score=101.91 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--h-HHHHH
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD--D-SLHVK 490 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~-~~~~~ 490 (561)
|+++..+..+|.++... |++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|. . .++..
T Consensus 3 p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDA-GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSS-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 44444555555555554 55555555555555555555555555555555555555555555555555554 3 45555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCc
Q 008550 491 LAQVFAAT-NMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 491 la~~~~~~-g~~~~A~~~~~~al~~~p~ 517 (561)
+|.++... |++++|++++++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 55555555 5555555555555555554
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=3.8e-13 Score=125.15 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=95.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
.....+..+|..++..|++++|+..|++++...|.+.. +...+++.++...+. ..+++++|.++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 34677888999999999999999999999998887642 233444555544332 24788899999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH-HHHcCCHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV-FAATNMLQEAL 505 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~-~~~~g~~~~A~ 505 (561)
... |++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++..|++ .++..++.+ ....+..+++.
T Consensus 241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 999999999999999999999999999999999999999999999999998877 778888887 44557788888
Q ss_pred HHHHHHHhcCCccHHH
Q 008550 506 SHYEAALRINSQNEAA 521 (561)
Q Consensus 506 ~~~~~al~~~p~~~~~ 521 (561)
..|.+++...|+++..
T Consensus 320 ~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 320 EMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ----------------
T ss_pred HHHHHhhCCCCCCCCC
Confidence 9999999999887643
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.42 E-value=2.8e-12 Score=101.27 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD--------DSLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 488 (561)
+..+..+|.++... |++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|. ..++
T Consensus 4 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 44556666666665 66666666666666666666666666666666666666666666666665442 3466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+|.++...|++++|..+|+++++..| ++.....+..+...++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777 5667777776666554
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=2.6e-13 Score=126.23 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHS 392 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 392 (561)
+.....+..+|..+.. |++++|+..|++++...|.+. .+...+++.++...+. ..+++++|.+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~--------~~~~~nla~~ 239 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH--------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH--------HHHHHHHHHH
Confidence 4456789999999999 999999999999999998754 1233445555544332 1368889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDA 471 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A 471 (561)
+...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 999999999999999999998888888888 4455677888
Q ss_pred HHHHHHHHhhCCCh
Q 008550 472 VSLLERYLKDWADD 485 (561)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (561)
...|.+++...|.+
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 88898888887764
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.42 E-value=7.7e-13 Score=104.32 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN----------GDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
+.+++|+..++++++++|++++++.++|.++...|++ ++|+..|+++++++|+. .+|+.+|.+|..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 7789999999999999999999999999999999876 59999999999999987 899999999998874
Q ss_pred ----HHHHHHHHHHHHh
Q 008550 501 ----LQEALSHYEAALR 513 (561)
Q Consensus 501 ----~~~A~~~~~~al~ 513 (561)
+..|...|++|++
T Consensus 96 l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HCCCHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHH
Confidence 4555556666555
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=1.2e-13 Score=134.63 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++++|+++.++..+|.++..+|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444555555555555555555555555555555566555555 556666666666665555555555556666666666
Q ss_pred hHHHHHHHHHHHhhCCCh-HHHHHHHHH--HHHcCCHHHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWADD-SLHVKLAQV--FAATNMLQEALSHYE 509 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~-~~~~~la~~--~~~~g~~~~A~~~~~ 509 (561)
+++|++.++++++..|++ .++..++.+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666665555544 445555555 555566666666665
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.7e-11 Score=117.74 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=109.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----------------HILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34457777788888888888888887766542 2456677777777777777777777666544
Q ss_pred CChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-
Q 008550 281 YIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KDERGALSYAEKSIRID- 346 (561)
Q Consensus 281 ~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~- 346 (561)
.... +...++.++...|++++|+.++++++...+ ....++..+|.++.. |++.+|+..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3321 233445555555666666666665554321 113455555665555 66666666665555431
Q ss_pred -----CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC---Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 347 -----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL-----RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 347 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
+....++..+|.+|...|++++|...+++++...+ .. ..+..+|.++...|++++|...|.+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11224455555555566666666655555554421 11 1244455555555555555555555554
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=4.2e-12 Score=100.25 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-------HHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~ 456 (561)
..+..+|.++...|++++|+..+++++...|.++.++..+|.++... |++++|+.++++++...|.+ +.++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34677778888888888888888888888888888888888888877 88888888888888877665 67778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcC
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATN 499 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g 499 (561)
.+|.++...|++++|+..++++++..|+...+..++.+....+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888776666667766655443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=5.3e-13 Score=130.16 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=115.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH--HHh-cCHhHHHHHHH-----------HHHhccCCCh
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVL--WER-KDERGALSYAE-----------KSIRIDERHI 350 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~A~~~~~-----------~~~~~~~~~~ 350 (561)
|+..++++++..|+++.++..++.+ +.. |++++|+..++ +++...|...
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 9999999999999999999999988 666 99999999999 7777766643
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=3.4e-12 Score=97.66 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=67.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--ChhHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER--HIPGYIM 355 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~ 355 (561)
+|++..++..+|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 455556666666666666666666666666666666666666666666666 6666666666666666666 6666666
Q ss_pred HHHHHHhc-CChhHHHHHHHHhHHhCCC
Q 008550 356 KGNLLLSM-KRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 356 l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 382 (561)
+|.++... |++++|+..+++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 66666666 6666666666666666554
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.3e-11 Score=120.08 Aligned_cols=214 Identities=11% Similarity=0.016 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
......|..+...|++++|++.|.++++..|.........+... ...... ..++..+|.+|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~----------~~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDD------KRRNEQ----------ETSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCS------HHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHH------HHhhhH----------HHHHHHHHHHHHHC
Confidence 34445556666666666666666666666555432211111000 000000 12356778888888
Q ss_pred CChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHhhh
Q 008550 364 KRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHASN 430 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~ 430 (561)
|++++|+..+.+++...+.. .+...++.++...|++++|+.++++++...+ ....++..+|.++...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 88888888888877764432 1245667777778888888888888776432 2266778888888888
Q ss_pred cCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch-----HHHHHHHHHHH
Q 008550 431 ASGREKAKKFYESALRLE------PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD-----SLHVKLAQVFA 496 (561)
Q Consensus 431 ~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~-----~~~~~la~~~~ 496 (561)
|++++|..++++++... |....++..++.++...|++++|...+++++...+ .+ .++..+|.++.
T Consensus 149 -g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 149 -KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp -TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred -cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 88888888888887642 22356788889999999999999999988876542 11 56778888888
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 008550 497 ATNMLQEALSHYEAALRI 514 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~ 514 (561)
..|++.+|..+|.++++.
T Consensus 228 ~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSSCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 899999999999888765
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.37 E-value=1e-12 Score=101.51 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=81.2
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 227 ASNDYKGGLELFAELLQR---FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 358889999999999988 58888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l 323 (561)
..+++++...|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999888887765433
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.35 E-value=3.3e-12 Score=98.58 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=84.2
Q ss_pred hcCChhhHHHHHHHHHhc---CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc
Q 008550 153 NSRHNRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (561)
Q Consensus 153 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (561)
..|++++|+..|+++++. +|.+..++..+ |.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~l----------------------------------------g~~~~~~~ 41 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGL----------------------------------------GSTFRTLG 41 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHH----------------------------------------HHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHH----------------------------------------HHHHHHcC
Confidence 468999999999999999 46666666655 89999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++.......
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987654333
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.33 E-value=1.2e-11 Score=116.15 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHH----------------hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQE----------------LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (561)
+..+|..+...|++++|+..|+++++ ..|.. .++.++|.++...|++++|+..++++++.+|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 44555555555555555555555555 33333 34566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 306 ~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 NTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665 66666666666666666666666666666666555555543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.32 E-value=1.2e-11 Score=101.85 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LG 453 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~ 453 (561)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++... |++++|+.++++++...+.. ..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444444445555555444444433211 13455555555555 55555555555555543221 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWA---DD----SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
++..+|.++...|++++|+..+++++...+ +. .++..+|.++...|++++|..++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556667777777777777777776665432 11 4667777777778888888888877776643
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.31 E-value=1.7e-11 Score=115.20 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRS----------------IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID 313 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 313 (561)
..+..+|..+...|++++|+..|+++++ .+|.+..++..+|.++...|++++|+..++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3455666666666666666666666665 334444444445555555555555555555555444
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
|+++.+++.+|.++.. |++++|+..|+++++++|.+..++..++.++...++++++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 4444454445444444444444444444444444444433
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=2.7e-11 Score=99.73 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------H
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------A 417 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 417 (561)
.++..+|.++...|++++|+..+++++...+.. .++..+|.++...|++++|+..+++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 455666777777777777777777766654322 246677777777777777777777777654432 4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.++..+|.++... |++++|+.++++++...+. ...++..+|.++...|++++|+..++++++..
T Consensus 90 ~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5677778887777 8888888888887765321 13466778888888888888888888887654
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.18 E-value=1.5e-10 Score=88.86 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+. .+++.+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666665566666666666666666666666666655554 55566666666666666666666666665
Q ss_pred CCc
Q 008550 515 NSQ 517 (561)
Q Consensus 515 ~p~ 517 (561)
.|+
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 553
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=3.3e-10 Score=86.93 Aligned_cols=83 Identities=16% Similarity=0.039 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..|+++++.+|+++.+++.+|.++... |++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888888877 8888888888888888888888888888888888888888888888887
Q ss_pred hCCC
Q 008550 481 DWAD 484 (561)
Q Consensus 481 ~~~~ 484 (561)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7664
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.1e-11 Score=91.39 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALA 457 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~ 457 (561)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..++++++++|++ ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34666777777777777777777777777777777777777777776 77777777777777777776 666666
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~ 476 (561)
+|.++...|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777776666666555443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.3e-10 Score=88.51 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=57.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLL 293 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 293 (561)
..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..+|.++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 346666666777777777777766666666666666777767777777777777766666666 55666666666
Q ss_pred HhcCCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVH 307 (561)
Q Consensus 294 ~~~~~~~~A~~~~~ 307 (561)
...|+++.|+..++
T Consensus 89 ~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 89 GAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHCCCCCSSSSS
T ss_pred HHHHhHhhhHhHHH
Confidence 66666555554443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.09 E-value=2e-09 Score=78.42 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.+++++++.+|+++.++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777776 77777777777777777777777777776665
Q ss_pred HcC
Q 008550 464 IEG 466 (561)
Q Consensus 464 ~~g 466 (561)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.08 E-value=4.1e-09 Score=83.41 Aligned_cols=120 Identities=17% Similarity=0.068 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAV 472 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~ 472 (561)
+++++|+.+|+++.+....... +|.++... +..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g-~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQ-INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTT-SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcC-CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3567777777777776543333 77777765 6777788888877765 567777788888777 77888888
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 473 SLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.+|+++.+. .+....+.+|.+|.. .+++++|+.+|+++.+.. ++.+...|.
T Consensus 82 ~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 888887765 344677788888877 778888888888887763 444444443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=1.5e-09 Score=79.07 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444444433
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.06 E-value=1e-09 Score=81.54 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
|+++.+++.+|.++...|++++|+..|+++++.+|+. .+++.+|.++...|++++|+..|++++++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444444444444443 4444444444444444444444444444433
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.03 E-value=2.1e-09 Score=79.78 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=72.1
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLH 488 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 488 (561)
.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.. ...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4799999999999999998 999999999999999999999999999999999999999999999999886543 344
Q ss_pred HHHHHHHHH
Q 008550 489 VKLAQVFAA 497 (561)
Q Consensus 489 ~~la~~~~~ 497 (561)
..+..++..
T Consensus 81 ~~l~~~l~~ 89 (100)
T 3ma5_A 81 SELQDAKLK 89 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=8.6e-10 Score=81.91 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4478888888888888888888888888888 88888888888888888888888888888888776633 44
Q ss_pred HhHHHHHHHHHHhcCCCC
Q 008550 299 YSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~ 316 (561)
+.+++..|+++....|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 566666666665555543
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=2.5e-08 Score=90.29 Aligned_cols=122 Identities=15% Similarity=0.045 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh--cC-ChHHHHH----HHH--HHHHhCCCCHHHHHHHHHHHHHcCChH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASN--AS-GREKAKK----FYE--SALRLEPGYLGAALALAELHVIEGRNG 469 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~~~A~~----~~~--~a~~~~p~~~~~~~~la~~~~~~g~~~ 469 (561)
..+|+.+|+++++.+|+++.++..++.++... .+ ....... .++ .++..+|.++.++..++..+...|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 35566666666666666666655555554321 01 0001111 111 123456888888888888888889999
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 470 DAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 470 ~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
+|+..+++++.++|+...+..+|.++...|++++|++.|++|+.++|..+.
T Consensus 295 ~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 295 ESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999998877677788899999999999999999999999987763
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=1.8e-09 Score=80.15 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..|.++...|++++|+..++++++.+|+++. +++.+|.++... |++++|+..|+++++.+|+++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455555566666666666666666666655 666666666555 666666666666666666555544
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=2.3e-08 Score=79.03 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=45.9
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAA 406 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 406 (561)
++++|+.+|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .+..+.+.+|.+|.. .+++++|+.+|
T Consensus 10 d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 34444444444444331 2222 444444444444444444444433 122334444444444 34444444444
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHh
Q 008550 407 REAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRL 447 (561)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~ 447 (561)
+++.+. .++.+.+.+|.+|.. . +++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHC
Confidence 444433 334444444444443 3 4444444444444443
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.93 E-value=3.9e-08 Score=85.08 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=90.3
Q ss_pred HHCCCCHHHHHHHHHHHhhh----cCC------hHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHH
Q 008550 411 KAMPQSAKALKLVGDVHASN----ASG------REKAKKFYESALRLEPG--YLGAALALAELHVIE-----GRNGDAVS 473 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~----~~~------~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 473 (561)
..+|++++.+++.|.+.... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 45678888888877766431 133 37899999999999999 566999999999995 99999999
Q ss_pred HHHHHHhhCCCh--HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcc
Q 008550 474 LLERYLKDWADD--SLHVKLAQVFAAT-NMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 474 ~~~~~~~~~~~~--~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 518 (561)
+|+++++++|+. ..++.+|..+... |++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999953 8999999999884 99999999999999988773
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=1.5e-08 Score=78.78 Aligned_cols=101 Identities=21% Similarity=0.104 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-CCh--HHHHHHHHHHHHcCCHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLLERYLKDW-ADD--SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~~ 506 (561)
....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++..++.. |.. +.++.+|..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3466778888888888999999999999999998 6679999999999998 633 899999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 507 HYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 507 ~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++++++.+|+|..+......+...+.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998888877653
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=4.4e-08 Score=88.77 Aligned_cols=155 Identities=16% Similarity=0.075 Sum_probs=92.3
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 240 ELLQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 240 ~~~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++..++..++.++.... ...|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCC
Confidence 3445566665444 445666665544 467888888888888888777777776665110 0001
Q ss_pred CCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHH
Q 008550 315 SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL 394 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (561)
....... ....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+..+|..+|.++.
T Consensus 252 ~~~~~~~---------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 252 LDEKQLA---------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE 321 (372)
T ss_dssp CCHHHHH---------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CchhhHH---------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111000 00111211 1233456666777777777666667777777777777777766555667777777
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
..|++++|+..|.+++.++|..+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcC
Confidence 77777777777777777777554
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.82 E-value=2.4e-07 Score=80.17 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHhhh----cCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CChHHHH
Q 008550 401 EALYAAREAMKAMPQ--SAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGY-LGAALALAELHVIE-GRNGDAV 472 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~-g~~~~A~ 472 (561)
.|...++++++++|+ +..++..+|.+|... .|+.++|..+|+++++++|+. ..+++.+|..+... |++++|.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 444444444444444 333444444444441 245555555555555555542 45555555554442 5555555
Q ss_pred HHHHHHHhhCCC
Q 008550 473 SLLERYLKDWAD 484 (561)
Q Consensus 473 ~~~~~~~~~~~~ 484 (561)
.++++++...|.
T Consensus 261 ~~L~kAL~a~p~ 272 (301)
T 3u64_A 261 EALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCGG
T ss_pred HHHHHHHcCCCC
Confidence 555555554443
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.81 E-value=2.4e-08 Score=96.43 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh-----CCCCHH--
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG-- 453 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-- 453 (561)
.+..+..+|++++|+..+++++.. .|++ ...+.++|.+|..+ |++++|+.++++++.+ .|+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344556778888888888888764 2333 45677888888887 8888888888888764 455554
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 454 -AALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 454 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.+.++|.+|..+|++++|..++++++++. |+. ++...++.++..+|.+++|...|.++.+..
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888653 332 566788888889999999999998886543
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=1.2e-07 Score=68.42 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 245 FPNNIHILLEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|++++|+.+++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57777778888877766655 67788888888888888888888888888888888888888888777777643
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.72 E-value=1.3e-07 Score=68.24 Aligned_cols=71 Identities=21% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 413 MPQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
+|+++..+..+|.++... ++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777766544 33 467777777777777777777777777777777777777777776666665
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=1.1e-07 Score=92.02 Aligned_cols=123 Identities=11% Similarity=-0.059 Sum_probs=84.7
Q ss_pred HHHHhcCChhHHHHHHHHhHHhC-----CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELR-----PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKAL 420 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~ 420 (561)
..+...|++++|+..+++++++. |++ .++.++|.+|..+|++++|+.++++++.. .|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556677777777777776652 222 24677777777777777777777777653 2333 4466
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
.++|.+|..+ |++++|+..|++++++ .|+++. ....++.++..+|.+++|...|.++.+.
T Consensus 397 ~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877 8888888888887763 566654 4456777888888888888888777553
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.67 E-value=4.5e-06 Score=81.42 Aligned_cols=174 Identities=9% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcCC---------hhHHHHHHHHhHHh--CCChHHH
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKR---------PEAAVIAFRGAQEL--RPDLRSY 386 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~--~~~~~~~ 386 (561)
+..+-..+.+ |+.++|+..|+++....- -+..+|..+-.++...+. .+.|...|++.... .|+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555 777777777777665421 234455555555544333 45666666666554 3555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-PGYLGAALALAELHVI 464 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~ 464 (561)
..+...|.+.|++++|..+++++.... +.+...+..+-..+.+. |+.++|.+.|+.+.+.. ..+...+..+...+.+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 677777777777777777777665542 22556666666666665 77777777777666542 1234566666666777
Q ss_pred cCChHHHHHHHHHHHhhC--CChHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDW--ADDSLHVKLAQV 494 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~--~~~~~~~~la~~ 494 (561)
.|+.++|.++++++.+.. |+..++..+-..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 777777777776665543 333444444333
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.66 E-value=4e-07 Score=67.66 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW-------AD-DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
++.-.+.+|..++..|+|..|+.+|+.+++.. +. ..++..+|.++.++|+++.|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34566788888888888888888888888753 11 27899999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 008550 523 KGLERLEKQM 532 (561)
Q Consensus 523 ~~l~~l~~~~ 532 (561)
.++..+...+
T Consensus 84 ~n~~~~~~~~ 93 (104)
T 2v5f_A 84 GNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9988776654
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.63 E-value=1.2e-05 Score=78.44 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-c---------CHhHHHHHHHHHHhccC-CChhHH
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-K---------DERGALSYAEKSIRIDE-RHIPGY 353 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~---------~~~~A~~~~~~~~~~~~-~~~~~~ 353 (561)
+......+.+.|+.++|+.+|+++.+.. +.+...|..+-.++.. + ..++|...|+++....- .+..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344455556666666666666655432 1233344444444432 2 24556666665554321 134555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhh
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASN 430 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 430 (561)
..+...+.+.|++++|..+|+++.+. .|+..+|..+...|.+.|+.++|.+++++..+.. ..+...+..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 56666666666666666666665543 3444556666666666666666666666655432 12455555555666655
Q ss_pred cCChHHHHHHHHHHHH
Q 008550 431 ASGREKAKKFYESALR 446 (561)
Q Consensus 431 ~~~~~~A~~~~~~a~~ 446 (561)
|+.++|.++++++-+
T Consensus 189 -g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 -KNADKVYKTLQRLRD 203 (501)
T ss_dssp -TCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 666666666666544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=4.6e-07 Score=70.56 Aligned_cols=95 Identities=16% Similarity=-0.012 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHhcCCHhHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---KNDEAILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLSK 304 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 304 (561)
....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | .+.++++.+|..+++.|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456677788878888888999999999999988 5668999999999988 6 557889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHH
Q 008550 305 LVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~ 324 (561)
+++++++..|++..+.....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHH
Confidence 99999999998877665443
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.57 E-value=1.1e-06 Score=65.65 Aligned_cols=101 Identities=22% Similarity=0.127 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-CCh--HHHHHHHHHHHHcCCHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD---AVSLLERYLKDW-ADD--SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~ 505 (561)
.....+...|.+....++.+..+.+.+|+++.+..+... ++.+++..++.. |.. +.++.+|..+.++|+|.+|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344566777888888788889999999999999988776 999999999887 533 89999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 506 SHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 506 ~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
.+++.+++..|+|..+......+...+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998888887665
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.41 E-value=3.2e-06 Score=80.28 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHHHHHH
Q 008550 432 SGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVKLAQV 494 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~la~~ 494 (561)
|++++|+..+++++++ .|+++. ++.++|.+|..+|++++|+.++++++... |++ ..+.++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 8889999999998874 566654 56788999999999999999999988753 332 678899999
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCccHHHHHHHHHH
Q 008550 495 FAATNMLQEALSHYEAALRI-----NSQNEAAKKGLERL 528 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l 528 (561)
|..+|++++|...|++|+++ .|++|.+......+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999999999999999875 68888776654444
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.38 E-value=4.1e-06 Score=62.09 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRF-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.+..|..++..|+|..|+..|+.+++.. +..+.++..+|.++.++|+++.|+.+++++++..|++..+...++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444666666666666666666666542 123455556666666666666666666666666666655544443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.29 E-value=1.6e-05 Score=75.64 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=78.2
Q ss_pred hhhcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHH
Q 008550 428 ASNASGREKAKKFYESALRL-----EPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVK 490 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~ 490 (561)
... |++++|+..++++++. .|+++ .++.++|.+|..+|++++|+.++++++... |++ ..+.+
T Consensus 298 ~~~-g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 298 KAH-WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHT-TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred Hhh-ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344 8899999999998864 45554 366788999999999999999999988753 322 67889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCccHHHHHHHHHH
Q 008550 491 LAQVFAATNMLQEALSHYEAALRI-----NSQNEAAKKGLERL 528 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l 528 (561)
+|.+|..+|++++|...|++|+++ .|++|.....+..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999875 67777666554433
No 223
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=98.27 E-value=0.00024 Score=54.89 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=100.8
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++-.+...++-.+|+.++.++..+.+.. .+-..+++..++-.|+|.+|+-.+.+
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~-----------~eY~lL~~I~LyyngEY~R~Lf~L~~-------------- 58 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPCK-----------PEYRMLMSIVLYLNGEYTRALFHLHK-------------- 58 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC---------------CTHHHHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccCC-----------hHHHhhhhhhhhhcchHhHHHHHHHh--------------
Confidence 45566778888899999999988887641 12457889999999999999876543
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----c-------------ccchh-H
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS-----K-------------ARNLQ-M 143 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~-----~-------------~~~~~-~ 143 (561)
.+.....+..+.|+.+.++|..|+..++++.. + |.+.+ .
T Consensus 59 ----------------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 59 ----------------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp ----------------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 14456788899999999999999999887531 1 22333 3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 180 (561)
+..+|.++.+.|+.++|+..|......+|-.+.+-..
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 4678999999999999999999999999976655433
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.22 E-value=5.2e-05 Score=57.77 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=33.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (561)
++.++|...|+.++......+.+|...|..-.+.|+...|.+.+.+++...|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 666666666666665555555566666666666666666666666666665554
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.19 E-value=1.3e-05 Score=76.04 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=38.9
Q ss_pred CChhHHHHHHHHhHHh-----CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHH
Q 008550 364 KRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDV 426 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~ 426 (561)
|++++|+..+++++++ .|++ .++.++|.+|..+|++++|+.++++++.. .|++ ...++++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4455555555555443 1222 22445555555555555555555555432 1222 2334455555
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 008550 427 HASNASGREKAKKFYESALR 446 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~ 446 (561)
|..+ |++++|+..|+++++
T Consensus 392 ~~~q-g~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGL-ENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHT-TCHHHHHHHHHHHHH
T ss_pred HHhc-cCHHHHHHHHHHHHH
Confidence 5554 555555555555544
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.15 E-value=1.4e-05 Score=76.04 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=90.2
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..+..+..+|+|++|+......+.+....-....+..+.++..+|.+|..+|+|++|+.++++++.+....
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------ 362 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------ 362 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH------
Confidence 34566778889999999999999998876555455567788999999999999999999999999999874100
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.| +..|.....++.+|.+|..+|++++|+.
T Consensus 363 --------------------------------------lg------------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 363 --------------------------------------FP------------GSHPVRGVQVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp --------------------------------------SC------------SSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------cC------------CCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 00 1224445566777777777888888888
Q ss_pred HHHHHHhc-----CCCcHHHHHH
Q 008550 163 CYKECLRH-----CPFFIEAITA 180 (561)
Q Consensus 163 ~~~~~l~~-----~p~~~~~~~~ 180 (561)
.|++++++ .|+++.+...
T Consensus 393 ~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 393 NLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHH
Confidence 88777743 4666655443
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.09 E-value=0.00017 Score=54.78 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRN---GDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
+..+.+.+++|+++.+..+. .+++.+++..+...|.. +.++.+|..+.++|+|.+|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678999999999998865 47999999999988855 89999999999999999999999999999999999998
Q ss_pred HHHHHHHhc
Q 008550 524 GLERLEKQM 532 (561)
Q Consensus 524 ~l~~l~~~~ 532 (561)
....+...+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.06 E-value=4.8e-05 Score=56.86 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHhcCCHhHHH
Q 008550 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE---AILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.....+...|.+....++.+..+.+.+|.++....+... ++..++..++.+ | ...+.++.+|..+++.|+|.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 444566667777777777788888888888888877666 888888887776 4 45577888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~ 324 (561)
.+++.+++..|++..+.....
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 888888888888876655443
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.01 E-value=0.00011 Score=55.00 Aligned_cols=83 Identities=10% Similarity=-0.034 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 451 YLGAALALAELHVIEGRN---GDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
.+.+.+++|+++.+..+. .+++.+++..++..|.. +.++.+|..+.++|+|++|+.+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 578999999999998765 47999999999988854 8999999999999999999999999999999999999888
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
..+...+.
T Consensus 119 ~~Ie~ki~ 126 (134)
T 3o48_A 119 SMVEDKIQ 126 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.00 E-value=0.00024 Score=54.18 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=75.2
Q ss_pred HCCCCHHHHHHHHHHHhhhcCCh------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGR------EKAKKFYESALRLEPGY--------LGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+.|++++.|.......... |+. ++-++.|++++..-|.. ...|...|.. ...++.++|...|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~-g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKN-SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 4577777777777777776 777 67777777777655532 2344455544 455778888888888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
++.....- .+|...|+...+.|+...|.+.+.+++...|...+....
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 77763322 678888888888888888888888888888876655443
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.92 E-value=9.6e-05 Score=57.83 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~ 495 (561)
.++.+.++.|+.+.|++++|+..++..-.......+...||++|
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 35556666666666666666666655444444445555555544
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.33 E-value=0.011 Score=44.96 Aligned_cols=79 Identities=10% Similarity=-0.045 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKND---EAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (561)
+.++.+.+.+|+++....+.. +++..++..+...|. ..+.++.+|..+++.|+|.+|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456888899999998887644 688888888888885 4578888899999999999999999999999998876654
Q ss_pred HHH
Q 008550 322 ALS 324 (561)
Q Consensus 322 ~l~ 324 (561)
...
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.096 Score=52.93 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
.+..++..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++-+-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 355678888889999999999999999999999999999999999999999998887763
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.20 E-value=0.0058 Score=45.77 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKN---DEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
++.+.+.+|.++.+..+. .+++..++..++.+|. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 467777777777776554 3567777777776663 356677777777777777777777777777777776654433
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.16 E-value=0.15 Score=47.15 Aligned_cols=91 Identities=14% Similarity=-0.014 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCC-----h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---CCCH----HHH
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPD-----L--RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSA----KAL 420 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~ 420 (561)
.+|.+|+..|+|.+|...+.+..+.... . +.+.....+|...+++.++...+.++.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5666666666666666666665553211 1 334555666666666666666666654321 1222 223
Q ss_pred HHHHHHHh-hhcCChHHHHHHHHHHHH
Q 008550 421 KLVGDVHA-SNASGREKAKKFYESALR 446 (561)
Q Consensus 421 ~~l~~~~~-~~~~~~~~A~~~~~~a~~ 446 (561)
..-|..+. .. ++|..|...|-.+++
T Consensus 184 ~~~Gi~~l~~~-rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADE-RDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhc-cCHHHHHHHHHHHHh
Confidence 34455555 44 666666666666654
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.94 E-value=0.019 Score=49.14 Aligned_cols=128 Identities=11% Similarity=0.091 Sum_probs=97.1
Q ss_pred HHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
..+++.|+.++|+..+.. +...|.+......+.++++-.|+++.|...++.+.+++|........+..+. .....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-KAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-HHHHH---
Confidence 456789999999998877 8888999999999999999999999999999999999998765543321111 00000
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 248 (561)
..-.-.....|.....+..|...++.+......|+.++|...-.++++.-|..
T Consensus 81 -R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 -RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111123344445567789999999999999999999999999998876643
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.90 E-value=0.4 Score=47.60 Aligned_cols=116 Identities=8% Similarity=-0.082 Sum_probs=58.5
Q ss_pred cCHhHHHHHHHHHHhccCCChhH----HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPG----YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.+.+.|...+.......+-+... +..++.-....+...++...+.+.....++......++...++.|+++.|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 55566666665554332222211 12222223333334455555555444444333322223334455777777766
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+..+-...+..+...+.+|..+... |+.++|..+|+++..
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~-g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLER-GREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Confidence 6554433334456666677766666 777777777776654
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.89 E-value=0.41 Score=47.52 Aligned_cols=206 Identities=9% Similarity=-0.030 Sum_probs=123.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH----HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV----ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
+.......+.+.|...+.......+-+..... .++.-... +...++...+.+.....++ ......++...++.|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence 33334455778888888777654433433222 22222222 3356778888876654433 333334444556779
Q ss_pred ChhHHHHHHHHhHHhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
+++.|...+..+..... .....+.+|.++...|+.++|...|+++.. +.+ .|-.++.... |..-. ...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa~~L---g~~~~-~~~--- 368 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAAQRI---GEEYE-LKI--- 368 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHHHHT---TCCCC-CCC---
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHHHHc---CCCCC-CCC---
Confidence 99999999987654322 235678899999999999999999999875 332 2323332222 32100 000
Q ss_pred HHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 444 ALRLEPGY-----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 444 a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
....+.. .......+..+...|....|...+.......+ +.-...++.+....|.+..++....
T Consensus 369 -~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~-~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 369 -DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-KTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp -CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0111111 01234567778899999999988888776533 3334567777788888887765443
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.84 E-value=0.065 Score=49.62 Aligned_cols=91 Identities=12% Similarity=-0.027 Sum_probs=48.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCh----HH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPG--Y----LGAALALAELHVIEGRNGDAVSLLERYLKDW----ADD----SL 487 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~----~~ 487 (561)
.+|..|... |++.+|.+.+.+..+.-.. + .+++..-..+|...|++.++...+.++.... +++ .+
T Consensus 104 kL~~l~~~~-~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDT-ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 455566655 6666666665555542111 1 2344445555666666666666666654332 222 34
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 008550 488 HVKLAQVFA-ATNMLQEALSHYEAALR 513 (561)
Q Consensus 488 ~~~la~~~~-~~g~~~~A~~~~~~al~ 513 (561)
...-|..+. ..++|..|...|-.+++
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 444555555 56666666666666653
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.82 E-value=0.12 Score=40.27 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=73.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
++-.+|+.++-+-.- ..|..++....++.+++-.|.+..++-.+.. -+...+.+.-+.|+...+++..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666665433222 2344445566677777778888877766543 23455666677788888888888888
Q ss_pred HHHHHh--c---------------CCCCHH-HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 306 VHDLLS--I---------------DPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 306 ~~~~~~--~---------------~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
++..+. . +|.+.+ .+..+|.++.+ |+.++|+.++.......|-.+
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 888772 1 233333 34566777777 888888888888877766543
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.06 Score=56.41 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=28.7
Q ss_pred HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
.+..|++++|.+..+.+ .+...|..+|..+.+.|+++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566666666665544 23456666666666666666666666655
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.023 Score=57.40 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
-+..+... |+++-|+++.++++...|.....|..|+.+|..+|+++.|+-.+..
T Consensus 343 Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 343 QTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34444444 5555555555555555555555555555555555555555555444
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.66 E-value=0.44 Score=49.75 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=21.8
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
|+++.|.+..+. .+++..|..+|..+...++++.|+.+|.+
T Consensus 666 ~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 666 GQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp TCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554321 23445555666666666666666555554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.23 Score=47.32 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=112.8
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
..+..+..+. .+++..|+.....+...+....+ ......+...+...++..|+++.....+.-..............
T Consensus 19 ~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 19 EEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455566654 57888888765555444332222 22234456667778888888887766554433322111111111
Q ss_pred chhhh---cc-cCCC------------CCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc-------cc
Q 008550 83 SSRSS---LS-TSNR------------SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-------AR 139 (561)
Q Consensus 83 ~~~~~---~~-~~~~------------~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-------~~ 139 (561)
+.+.. +. .... .....-.-..+.....+...++..+...|++.+|..++..+... ..
T Consensus 96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 11110 00 0000 00000000011112456688999999999999999999886321 12
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHh---cCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLR---HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
-.+++....+++...+++.+|...++++.. ..+..+.....
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~------------------------------------ 219 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE------------------------------------ 219 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH------------------------------------
Confidence 345777889999999999999999998742 22333332222
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
.+...|..+...++|.+|...|..+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1233488888999999999999888764
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.27 Score=39.34 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=23.4
Q ss_pred HhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
...|+++.|.+..+.. .+...|..+|......|+++-|..+|.+
T Consensus 16 L~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4456666665554433 1223355566666666666655555554
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.07 E-value=1.2 Score=48.34 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=82.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc----------------------
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI---------------------- 312 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------- 312 (561)
+...+...+.++-+.. .....|.++...+.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555555554433 22334555555566666666666666666666554211
Q ss_pred -CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH
Q 008550 313 -DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-----PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385 (561)
Q Consensus 313 -~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (561)
....+..|..+..++.. +.++.+++....+++..+.+. ..|..+-..+...|+|++|...+...-...-....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 11113455666667777 888888888888887654332 24666777788888888887777655333323344
Q ss_pred HHHHHHHHHhcCCHH
Q 008550 386 YQGLVHSYLQFSKVK 400 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~ 400 (561)
+..+....+..|..+
T Consensus 974 Lr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCChh
Confidence 555555555555443
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.01 E-value=0.08 Score=45.36 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
....++.|+.++|+..+...++.+|.|......+...++-.|+++.|...++.+.+++|........+-.+. .
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence 345567899999999999999999999999999999999999999999999999999998754322211110 0
Q ss_pred HHHHHHHHHh-----cCCCCHHHHHH---HHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 302 LSKLVHDLLS-----IDPSRPEVFVA---LSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 302 A~~~~~~~~~-----~~~~~~~~~~~---l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
|...=.+++. ..+..+..|.. -+..... |+.++|...-.++++..|..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111111 11222333322 2222333 88888888888887776553
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.41 Score=38.26 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.....|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-. +..+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 445678888888887665 5677888888888888888888888887522 334445555666665554
Q ss_pred HHHHHH
Q 008550 304 KLVHDL 309 (561)
Q Consensus 304 ~~~~~~ 309 (561)
+..+.+
T Consensus 81 kla~iA 86 (177)
T 3mkq_B 81 KMQNIA 86 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.75 E-value=8.3e-05 Score=68.88 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=128.5
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CC-cHHHHHH
Q 008550 104 AINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PF-FIEAITA 180 (561)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~ 180 (561)
..+.+++|..+|..++..+...+|+..+-+ .+++..+........+.|++++=+.+++-+-+.- |. +.+..+.
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIk----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445567788888888888888877765533 3344555566666677788887777776654332 21 1222233
Q ss_pred HHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------------
Q 008550 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ----------------- 243 (561)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------- 243 (561)
++. .++..+.-+. ..... ..... .-|.-++..|.|+.|.-+|..+-.
T Consensus 126 yAk----~~rL~elEef----l~~~N-----~A~iq---~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAK----TNRLAELEEF----INGPN-----NAHIQ---QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHT----SCSSSTTTST----TSCCS-----SSCTH---HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred HHh----hCcHHHHHHH----HcCCC-----cccHH---HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 332 2222111111 10000 00001 116667777777777665543311
Q ss_pred ----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 244 ----RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 244 ----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
...+++.+|.....++...+++.-|..+--.++- .|+. +..+...|...|.+++-+.+++..+.+..-+...
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 1123455555555556666655555444433332 2222 2223345566677777777777777666666677
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHhc--cCC------ChhHHHHHHHHHHhcCChhHHH
Q 008550 320 FVALSVLWERKDERGALSYAEKSIRI--DER------HIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 320 ~~~l~~~~~~~~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
+..+|.+|.+=++++-.++++..... -|+ ....|..+..+|..-.+++.|.
T Consensus 266 FTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77777777765555555555432210 011 1234556666666666666554
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.53 E-value=0.25 Score=46.21 Aligned_cols=99 Identities=11% Similarity=0.137 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhCCHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----------------------HILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------~~~~~la~~~~~~~~~~~A 268 (561)
+...+......|......|+.+.|...+.+++......+ .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 334444444456666667899999999999997643221 1122233444445555555
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+..+..++..+|.+..++..+..++...|+..+|+..|+++
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544443
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.53 E-value=2.7 Score=43.54 Aligned_cols=298 Identities=10% Similarity=0.035 Sum_probs=162.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------Ch----HHHHH
Q 008550 224 CCIASNDYKGGLELFAELLQRF-PNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IM----TYMDE 288 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~ 288 (561)
-.+..|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+..+.. .. .+...
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3556788889988888776532 233 345556666655544 4788888887765430 11 34456
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCH--HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRP--EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
+|.++.-.++ +++...+..++..+.... .+-+.+|.++.. |+.+-....+..+.....+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6666665555 456666666665332111 244566777777 776555555555554333322333445555567788
Q ss_pred hhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
.+.+....+.... .++. .+-..+|..|...|+...-..++..+.....++..-...+|..+... |+.+.+...+
T Consensus 540 ~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~-g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL-RDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS-SSCSSHHHHT
T ss_pred hHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc-CCHHHHHHHH
Confidence 8777666665544 3333 23556788889999976555577766653222333222333333333 5554444444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCC-----HHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIE--GRN-GDAVSLLERYLKDWADD----SLHVKLAQVFAATNM-----LQEALSHYE 509 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~--g~~-~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~-----~~~A~~~~~ 509 (561)
....+ ..++.+.+..+..+-.. |+. .+++..+.++.. ++++ .+...+|.+.....+ ...-++.+.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 33222 24566665554444333 333 678888888754 4444 355666666555433 333444444
Q ss_pred HHHhcCCccHHHHHHHHHHH
Q 008550 510 AALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 510 ~al~~~p~~~~~~~~l~~l~ 529 (561)
+.+...-.++.+++.....+
T Consensus 695 ~~~~dk~~d~~~~fga~iAq 714 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQ 714 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHH
Confidence 44443233555555444443
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.47 E-value=0.29 Score=50.80 Aligned_cols=97 Identities=5% Similarity=-0.065 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKG 357 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 357 (561)
..+..+...+++.|+.++|..+|..+.+. ..-+...|..+...+.. |+.++|.+.|+++....- -+..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45777888889999999999988765432 23466778888888888 999999999988876432 2466777777
Q ss_pred HHHHhcCCh-hHHHHHHHHhHHhC
Q 008550 358 NLLLSMKRP-EAAVIAFRGAQELR 380 (561)
Q Consensus 358 ~~~~~~~~~-~~A~~~~~~~~~~~ 380 (561)
.++.+.|+. ++|..+++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 788888874 67888888887763
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.37 E-value=0.2 Score=51.94 Aligned_cols=97 Identities=9% Similarity=-0.099 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRI----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGL 389 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 389 (561)
...+..+...+.+ |+.++|...|..+... ..-+..+|..+...+.+.|+.++|...|+++.+. .|+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467778888888 9999999999776532 2335788999999999999999999999998876 5777889999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHHC
Q 008550 390 VHSYLQFSK-VKEALYAAREAMKAM 413 (561)
Q Consensus 390 ~~~~~~~~~-~~~A~~~~~~~~~~~ 413 (561)
..++.+.|+ .++|.++++++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 999999998 478899999988765
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.99 E-value=0.42 Score=44.62 Aligned_cols=109 Identities=15% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEA-LYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
|......|+.+.|...+.+++.+.... .... ...+-.+ ...+++. ...+...++..+... |+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~--------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~-g~ 186 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLR--------DFQFVEPFATALVED------KVLAHTAKAEAEIAC-GR 186 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT--------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC--------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC-CC
Confidence 333445678888888888887774322 0000 0011111 1111111 122344566677777 99
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999888654
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=2.9 Score=39.78 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=117.8
Q ss_pred ccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH----HhcC
Q 008550 228 SNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVKC 297 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 297 (561)
.|++++|++.+..+-+. .+....+...+..++...|+++...+.+....+.......+...+.... ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788888877655543 2345778888999999999999988887766555444433333222211 1122
Q ss_pred CHhH--HHHHHHHHHhcCCC-------CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--C----hhHHHHHHHHHH
Q 008550 298 DYSK--LSKLVHDLLSIDPS-------RPEVFVALSVLWER-KDERGALSYAEKSIRIDER--H----IPGYIMKGNLLL 361 (561)
Q Consensus 298 ~~~~--A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~ 361 (561)
..+. -+...+........ ...+...++.++.. |++.+|...+.....-.-. + .+.+.....++.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 11111111111111 13456778888888 9999999998887542111 1 356777888899
Q ss_pred hcCChhHHHHHHHHhHH----hCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQE----LRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
..+++..|...++++.. ..+.. ..+...|.++...++|.+|-.+|..++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999988888642 22222 23567788888999999999999888764
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.66 E-value=2.3 Score=38.06 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=78.2
Q ss_pred cchHHHHHHHHhhhhh---hhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcc
Q 008550 2 EVPKEQITALIDQGLY---DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPK 78 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (561)
++.+...+..++.|+| =+|.+....+........ .-....+.++.-+..+++.|++.-|...-.-.++......
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k--~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~- 89 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQG--NWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG- 89 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-
Confidence 4567888889999998 666666555544322111 1334455566666666666666666655544444321000
Q ss_pred ccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC--------HHHHHHHHhcCCC-cccchhHHHHHHH
Q 008550 79 QNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE--------TKAAIVEMEGIPS-KARNLQMSLLMAK 149 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~l~~~~~-~~~~~~~~~~l~~ 149 (561)
...+.+..-++..++..... ..+|+.+-.+... ...+++.+..+|.
T Consensus 90 -------------------------~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 90 -------------------------QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp -------------------------CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred -------------------------CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 00112233344444433332 2344444443222 2467899999999
Q ss_pred HHHhcCChhhHHHHHH
Q 008550 150 LYRNSRHNRGAVACYK 165 (561)
Q Consensus 150 ~~~~~~~~~~A~~~~~ 165 (561)
.|.+.+++.+|...|-
T Consensus 145 ~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHccCCHHHHHHHHH
Confidence 9999999999998883
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=1.7 Score=41.50 Aligned_cols=60 Identities=13% Similarity=-0.034 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCC----h----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD----L----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
+..+-+.|...+.+++|..+..++. .|. + ..++.+|.++...++|.+|.+++..++...|
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555442 221 1 1133445555555555555555555544444
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.041 Score=52.33 Aligned_cols=150 Identities=12% Similarity=-0.001 Sum_probs=59.9
Q ss_pred HHHhhhhhhhHHhHHHHHHH---hccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhh
Q 008550 10 ALIDQGLYDSAQMLGCFLVS---SSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (561)
Q Consensus 10 ~~~~~~~~~~a~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (561)
.+++++.|+++...+..++. +...+...-+...+..||+.+.++-..|+.............+.|..-. ..+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~----~~rt 220 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK----FLKI 220 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHH----HHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH----HHHH
Confidence 47788999998888776652 2222333345566778888888887777766544333332222211100 0000
Q ss_pred hcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC--CCc--c--cchhHHHHHHHHHHhcCChhhH
Q 008550 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI--PSK--A--RNLQMSLLMAKLYRNSRHNRGA 160 (561)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~--~~~--~--~~~~~~~~l~~~~~~~~~~~~A 160 (561)
... .--......++..+-+.|+..+.++.|..++.+. +.. + .....++.+|+++.-+++|.+|
T Consensus 221 a~l-----------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 221 ASL-----------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp CCS-----------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhc-----------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 000 0000012457778889999999999999999984 322 1 2245668899999999999999
Q ss_pred HHHHHHHHhcCCCc
Q 008550 161 VACYKECLRHCPFF 174 (561)
Q Consensus 161 ~~~~~~~l~~~p~~ 174 (561)
..++..+++..|.+
T Consensus 290 ~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 290 NEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHTSSCSCS
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999998864
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.41 E-value=5.5 Score=41.35 Aligned_cols=261 Identities=9% Similarity=0.003 Sum_probs=139.9
Q ss_pred HHHhCCHHHHHHHHHHHHhhC-CCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC---C---CH----HHHHHH
Q 008550 259 DAIIGKNDEAILNFEKVRSID-PYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP---S---RP----EVFVAL 323 (561)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l 323 (561)
....|+.++++..+.+.+... ..+ ..+.+.+|.++...+ .++...+...+.... . .+ .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345577788888887766532 222 234555555555444 468888877775432 1 11 244456
Q ss_pred HHHHHhcCHhHHHHHHHHHHhccCCCh--hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH--HHHHHHHHHhcCCH
Q 008550 324 SVLWERKDERGALSYAEKSIRIDERHI--PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS--YQGLVHSYLQFSKV 399 (561)
Q Consensus 324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 399 (561)
|.++....-+++...+...+..+.... .+-+.+|.++.-.|+.+.....+..+.+.. +... ...+|..+...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 666655223567777777775433211 345567888888888776666666655433 3322 34455555677777
Q ss_pred HHHHHHHHHHHHHCCCCHHHH----HHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 400 KEALYAAREAMKAMPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 400 ~~A~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
+.+....+.... .+ ++... ..+|..|... |+...-...+..+..-..++..-...+|..+...|+.+.+...+
T Consensus 541 e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGT-Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGT-GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 766666665443 32 33333 3456667776 77544444666655432222222222333344456665555555
Q ss_pred HHHHhhCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 476 ERYLKDWADDS----LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 476 ~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
....+ ..++. +-..+|.+....++ .+++..+.+... ++++......+..+
T Consensus 618 ~~L~~-~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSK-SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGG-CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 43333 23332 33444444433343 678888887753 56555444443333
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.55 Score=44.56 Aligned_cols=96 Identities=7% Similarity=-0.028 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC--CCH----HHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSA----KAL 420 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~ 420 (561)
.++..+|..|...|+++.|.+.|.++...... . ..+..+..++...+++..+...+.++..... .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45566666666666666666666666554322 2 3455666666666666666666666644321 111 223
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
...|.++... ++|..|...|-.++..
T Consensus 212 ~~~gl~~l~~-r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAV-RNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ChHHHHHHHHHHHhcc
Confidence 3444555555 6777776666666554
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.72 E-value=0.51 Score=45.34 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAA 497 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~ 497 (561)
.+..+|.+.... ..+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++... |-+.+..++...+.+
T Consensus 154 ~l~~LGDL~RY~-~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYR-NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHH-HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 566778887776 778888888888888888888888888888888888888888777777654 334566666665543
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.34 E-value=2.6 Score=45.77 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=19.9
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
..|.++...+.+|.++...|++++|..+|+++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555555566666666666666666666665
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.18 E-value=0.79 Score=44.04 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+..+|.+......++.|..+|.++..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3444555444555555555555555555555555555555555555555555555555444444444444444433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.91 Score=43.03 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHH----HH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLG----AA 455 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~----~~ 455 (561)
++..+|..|...|++++|.+.|.++...... -...+.....++... +++..+...+.++-... ..++. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4667777777777777777777777664332 245555666666666 77777777777765431 12222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
...|.++...++|.+|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 334555556666777666666655544
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.21 E-value=1.8e-05 Score=73.15 Aligned_cols=265 Identities=11% Similarity=0.006 Sum_probs=134.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHH
Q 008550 139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR 218 (561)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (561)
+.+.+|..+|..++..++..+||..|-++ .+|.+..-.... .
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~---A--------------------------------- 93 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA---A--------------------------------- 93 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHH---T---------------------------------
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHH---H---------------------------------
Confidence 45789999999999999999999988766 455543332222 2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
.+.|.+++=+.+++-+.+. ...+.+-..+..+|.+.++..+-.+++. .|+. .-....|.-++..|.
T Consensus 94 -------~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~-A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 94 -------NTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQVGDRCYDEKM 159 (624)
T ss_dssp -------TTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSS-SCTHHHHHHHHHSCC
T ss_pred -------HhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-----CCCc-ccHHHHHHHHHHccC
Confidence 2334444444444433322 2223333344445555554333222111 1222 223345555555555
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
|+.|.-+|..+ .-|..++.++.. |++..|++.-+++ +++.+|......+...+++.-|..+--..+
T Consensus 160 YeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 160 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp STTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 55555444221 112234444444 5555555544433 445556666666666666655544433332
Q ss_pred HhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH-hC-CC-----
Q 008550 378 ELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR-LE-PG----- 450 (561)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-~~-p~----- 450 (561)
- .|+. +-.+...|...|.+++-+..++..+.+..-+...+..+|.+|.+ -++++-.+.++.-.. ++ |.
T Consensus 227 v-hade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK--Y~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 227 V-HADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK--FKPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp C-CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS--SCTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred c-cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 1111 11233445566666666666666666655666666666666664 344544444432111 00 11
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHH
Q 008550 451 -YLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 451 -~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
....|..+..+|..-.+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 23345666666666666665543
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.46 E-value=11 Score=33.48 Aligned_cols=136 Identities=8% Similarity=-0.046 Sum_probs=83.0
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
++.+..++.-++.|+|=+|.+....+......... -....+.++.-+..+++.|++.-|...-.-.++......
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~--~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---- 87 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKS--YEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---- 87 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC----
Confidence 45677888899999988888877776654322211 344555666666777777777777666555554421110
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC--------HHHHHHHHhcCCC-cccchhHHHHHHHHHH
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE--------TKAAIVEMEGIPS-KARNLQMSLLMAKLYR 152 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~l~~~~~-~~~~~~~~~~l~~~~~ 152 (561)
...+.+..-++..++..... ..+|+.+-.+... .-.++..+..+|..|.
T Consensus 88 ----------------------~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 88 ----------------------VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp ----------------------CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred ----------------------CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 00112233334444333221 2445555554433 3468899999999999
Q ss_pred hcCChhhHHHHHH
Q 008550 153 NSRHNRGAVACYK 165 (561)
Q Consensus 153 ~~~~~~~A~~~~~ 165 (561)
+.|++.+|..+|-
T Consensus 146 ~e~~~~~A~~H~i 158 (312)
T 2wpv_A 146 EGDFVYEAERYFM 158 (312)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHH
Confidence 9999999998875
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.89 E-value=23 Score=31.47 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~ 410 (561)
..|...|+...|...+....
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 34456666766666666544
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.69 E-value=26 Score=31.34 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.++..+..+|..+.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555666666666666666665554
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.15 E-value=26 Score=26.49 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHCCCC--------------------------------------------------HHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKAMPQS--------------------------------------------------AKA 419 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~--------------------------------------------------~~~ 419 (561)
|.-..-.|..++..+...+.....|-. .+.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
....-..+..+ |+.++-.+.+...+...|-+++.+..+|..|.+.|+..+|.+++.++.+
T Consensus 94 vd~ALd~lv~~-~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 94 VNKALDILVIQ-GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.15 E-value=11 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
..+|..+...|++++|..+|-+|+...|+-.....
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666667777777777777777666554433
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.41 E-value=8.7 Score=26.30 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
++-..+..+-.+++.+...|.|++||++.+++...
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56667788889999999999999999999998764
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.28 E-value=31 Score=36.49 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-CCCh
Q 008550 318 EVFVALSVLWER-KDERGALSYAEKSIRID-ERHI 350 (561)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~ 350 (561)
..|.....++.. +-++-++...+.|++.- ++++
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 356667777777 88888888888888643 3443
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.39 E-value=26 Score=37.09 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHc
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL-EPGY--LGAALALAELHVIE 465 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~p~~--~~~~~~la~~~~~~ 465 (561)
+...+...|.++-+. +.+...|.++..-+.+|.++... |++++|..+|+++-.- .+.+ .........+.-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~-ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~-- 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKS-KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE-- 888 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHT-TCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH--
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcccCcccccchhhhhhccC--
Confidence 445556666665433 34456677777777778888877 8888888888776421 1111 000000011000
Q ss_pred CChHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCccHH
Q 008550 466 GRNGDAVSLLERYLKDWA-DDSLHVKLAQVFAATNMLQEALSHYEAALRI-NSQNEA 520 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 520 (561)
..+... ....|.+...++...+-++-+++..+.|++. .++++.
T Consensus 889 ------------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 889 ------------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp ------------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ------------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 000000 0146788888888889999998888888864 455554
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.57 E-value=6.7 Score=32.37 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 36 ETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
..+......-+|++|..++.+++|.+|...|.+|+...|.
T Consensus 7 ~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 7 DYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3456777888999999999999999999999999998764
No 275
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=65.16 E-value=41 Score=26.06 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
--+.-+...|-..+|.+.+..++.. +| .--|....|.+|..|+...+.
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~---~~-----------------------------~~Lp~~~kY~LA~SYI~~e~L 57 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDY---AP-----------------------------EDMPYVIQYELASSYVMTESL 57 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTS---CG-----------------------------GGSCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcC---Ch-----------------------------hhCChhHHHHHHHHHHHccCC
Confidence 4466778889999999998887652 21 113456899999999998876
Q ss_pred HHHH-H-HHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 125 KAAI-V-EMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 125 ~~A~-~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
.+-. . ++..+.... +-.+++-.+|.-+|++++|+..-+.+
T Consensus 58 s~eQKenIln~itlkS---de~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 58 TEEQRQTVSNNITLKT---DEQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp CHHHHHHHHHTCCTTS---CHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCccC---CHHHHHHHHHHcCCchHHHHHHHHhc
Confidence 5433 2 555553221 22334445555679999999887765
No 276
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=63.27 E-value=6.7 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYK 74 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 74 (561)
-.+.+|..+..+|+++.|+.+|-+|+..+|
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 446789999999999999999999999985
No 277
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.41 E-value=25 Score=33.17 Aligned_cols=63 Identities=8% Similarity=0.091 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhC--------CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcc
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDW--------ADD---SLHVKLAQVFAATNMLQEALSHYEAALRI-NSQN 518 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 518 (561)
..+-.+|++.|+..-+...++..-... |.. ...+.+|+++...+++.+|.+++..|++. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345577888888888877776543322 222 57788999999999999999999999988 6654
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.04 E-value=52 Score=25.69 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---H---HHHHH---HHHHHHHhCCHHHHHHHHHHHHh
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN---I---HILLE---MAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~---~~~~~---la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
..+..+..++..|+|=+|-++++.+....+.. . ..+.+ .|..+.+.|+..-|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666888999999999999999998876544 1 22222 33455667888888888888876
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=60.90 E-value=14 Score=25.36 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
+..+..+...|...-..|+|++|+.+|.++++..
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4455567777888889999999999999999863
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.82 E-value=35 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=20.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIH 250 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 250 (561)
...|..+...|++++|...|-+++...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34466667777777777777777776665433
No 281
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=57.78 E-value=19 Score=24.40 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
...++..+..|.-+++.++|.+|...|+++...
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 467888899999999999999999999999865
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.94 E-value=19 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=17.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.+|..+...|+++.|+.+|-+|+...|.+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45666666666666666666666555544
No 283
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.81 E-value=17 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
.+..+...|...-+.|+|.+|+.+|.++++.
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445677777788899999999999999886
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.63 E-value=86 Score=25.54 Aligned_cols=80 Identities=8% Similarity=-0.073 Sum_probs=51.1
Q ss_pred HHHHHHHHHCC------CC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 404 YAAREAMKAMP------QS---AKALKLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 404 ~~~~~~~~~~p------~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
.++++++.... ++ ..+|...+..+. . +...++..+|.-+... ....+..|...|..+...|++.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~-~-~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFL-S-NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhc-c-cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666655332 22 344555555442 2 4466777777776654 4455667777888888888888888
Q ss_pred HHHHHHHhhCCCh
Q 008550 473 SLLERYLKDWADD 485 (561)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (561)
++|+..++....+
T Consensus 136 ~Vy~~GI~~~A~P 148 (202)
T 3esl_A 136 VLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHTTCBS
T ss_pred HHHHHHHHcCCcc
Confidence 8888888776444
No 285
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.46 E-value=9.2 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
-...+|+-+...|+|+.|+.+|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4578899999999999999999999876
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.96 E-value=73 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCc---HHHHHHHHH-HcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFF---IEAITALAE-LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
-+..|..+++.|+|-+|=.+++.+-+..+.. ...+..|++ +.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lA---------------------------------- 80 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAA---------------------------------- 80 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH----------------------------------
Confidence 3455666667788888888888777665433 344455543 32
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
-|....+.|+...|..++.+++..
T Consensus 81 -vAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 81 -GAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp -HHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 167778889999999999999874
No 287
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.59 E-value=94 Score=27.91 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 415 QSAKALKLVGDVHASN-ASGREKAKKFYESALRL-----EPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
..|.++.++|.+-... ......++..|.+++.. ...+...+..+|-.+++.+++.+|+..+-.+-.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 4567777777665432 01223377777777753 233455666677777777777777777766543
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=52.46 E-value=28 Score=32.86 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=48.0
Q ss_pred HHHHhhhhhhhHHhHHHHHHHhcc--CCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh-cccC
Q 008550 9 TALIDQGLYDSAQMLGCFLVSSSA--INGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY-YKIV 76 (561)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~ 76 (561)
+.+++-++..-+..+...+-+... .....+....+.-+|++|..++.+++|.+|...+..|+.. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344555555555555544444322 1222356778889999999999999999999999999998 7754
No 289
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.10 E-value=20 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
..+...|...-+.|+|.+|+.+|.++++.
T Consensus 12 i~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 12 RKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566677778899999999999999886
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.36 E-value=40 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFP 246 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 246 (561)
.|..|..++..++|.+|.+.+..+++..|
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 34444444444555555555444444444
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.58 E-value=1.1e+02 Score=24.86 Aligned_cols=48 Identities=10% Similarity=-0.144 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHhc--cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 332 ERGALSYAEKSIRI--DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 332 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
..++..+|.-+... ....+..|...|..+...|++.+|..+|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444332 2233344444555555555555555555555544
No 292
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.13 E-value=30 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+...+..+.+.|+|++|+++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344566666666666666665553
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.31 E-value=1e+02 Score=23.75 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 437 AKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 437 A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+..+|.-+... ....+..+...|..+...|++.+|.++|+..++....+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55555555543 33445556666667777777777777777777665443
No 294
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=44.27 E-value=1.5e+02 Score=27.31 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------CCccHHHHHHHHHH
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI------NSQNEAAKKGLERL 528 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~l 528 (561)
|..+|-++++.+++.+|+..|-.+-.. ..+|.+++..+-.+
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 444455555555555555555544322 23444554444443
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.63 E-value=26 Score=23.36 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455667777777777777777776553
No 296
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=41.95 E-value=48 Score=22.44 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
..+..+...|...-..|+|++|+.+|.++++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445666777777889999999999999886
No 297
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.92 E-value=89 Score=21.71 Aligned_cols=54 Identities=15% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCh--H-----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 458 LAELHVIEGRNGDAVSLLERYLKDWADD--S-----LHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~--~-----~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
.|..++..|+|-+|-+.++..-...|.+ . +....|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3455666677777777777776666543 1 223334445566776 7777777765
No 298
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=39.56 E-value=64 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
...+..++..|...-..|+|++|+.+|..+++..
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445556777777888999999999999998863
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.27 E-value=1.7e+02 Score=24.37 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 469 GDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
+++..+|.-+....-.. ..|...|.++...|++.+|..+|+..++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45556666655544222 567777777777777888877777777765
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.00 E-value=2.1e+02 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
......+..|..+...|++.+|+..|+.++..
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445667788999999999999999999875
No 301
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.32 E-value=98 Score=21.48 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHH--HHHHHHHhCCHHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLE--MAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~--la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
..|..++..|+|=+|-++++.+....|+.. ..+.+ .|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 347777888888888888888888775421 12222 23344456666 7777777765
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.29 E-value=46 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=8.0
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008550 496 AATNMLQEALSHYEAAL 512 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al 512 (561)
...|++++|+.+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34445555544444444
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.19 E-value=1e+02 Score=30.86 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
....|+.....|+|.-|.+....++..+|+|..++..++..+++++
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666666555555543
No 304
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=36.41 E-value=99 Score=20.98 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
..-|.-+++.++|.+|...|+++.....++
T Consensus 57 i~eak~~y~~~ny~ea~~l~~k~~n~ten~ 86 (106)
T 2vkj_A 57 IAEGKDLFETANYGEALVFFEKALNLSDNE 86 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHccccCH
Confidence 334555666666666666666666554443
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.02 E-value=48 Score=22.41 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=9.5
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 008550 496 AATNMLQEALSHYEAALR 513 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~ 513 (561)
...|++++|+.+|..+++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 445555555555555443
No 306
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=35.15 E-value=46 Score=24.33 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
..+..++..|...-..|+|++|+.+|.++++..
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 344455666766778899999999999998863
No 307
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=34.78 E-value=2e+02 Score=24.09 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh-hHHHHHHHHHHh-cCChhHHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-PGYIMKGNLLLS-MKRPEAAVIAFR 374 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~ 374 (561)
.+-+..++.+..+ ++|++.+.+.+++...++.-. +-...+..+|.. .|....+...+.
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiis 68 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLS 68 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 3455667777777 888888888888877765432 334444444432 233344444443
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.88 E-value=54 Score=22.14 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.7
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 008550 496 AATNMLQEALSHYEAALR 513 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~ 513 (561)
...|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 344555555555444433
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.63 E-value=2e+02 Score=23.67 Aligned_cols=51 Identities=12% Similarity=-0.049 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 435 EKAKKFYESALRLEPGYLGA--------ALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+.|+..++..-+-.+-.... ......++.+.|.|++|.+.+++.+..++.+
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 56666666655544322111 1123344566677777777777766655444
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.47 E-value=1.7e+02 Score=22.87 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 008550 110 VKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF 174 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 174 (561)
++...+.+ .++..+-...+..-......+..|...|..+...|++.+|..+|+..++....-
T Consensus 68 lWl~ya~~---~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 68 LWLKLGRL---CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHH---CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHh---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44555544 245444444444333335667788889999999999999999999999877543
No 311
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.24 E-value=2.9e+02 Score=25.53 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 415 QSAKALKLVGDVHASN-ASGREKAKKFYESALRL-----EPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
..|.++.++|.+-... ......++..|.+++.. ...+...+..+|-.+.+.+++.+|+..+..+-.
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4577777777775432 01224467777777763 233445666677777777778777777776644
No 312
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.07 E-value=4e+02 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCcc
Q 008550 487 LHVKLAQVF--AATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 487 ~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+..+..++ ...|+++.|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344444544 677888888888877 5565654
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.92 E-value=2.3e+02 Score=23.29 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 231 YKGGLELFAELLQRFPNNIHI--------LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+.|+.+++.+-+..+-.... -.....++.+.|.|++|.+.+++....+|.+......|..+-...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 355666666666555432211 1223446678899999999999988876666555555555544443
No 314
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=27.35 E-value=2.8e+02 Score=23.44 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALR-----LEPGYLG---AALALAELHV-IEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~~~~ 480 (561)
+.|...|+.|.. +.|.+|- ...+.+..|+ -++++++|....++++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555543 4566653 2233344433 46777777777666654
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.94 E-value=1.1e+02 Score=30.64 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+.....|+..+..|+|.-|.+....++..+|++..+...++.++.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3444445555555556666666666666566666555555555555554
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.47 E-value=2.3e+02 Score=25.50 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHhc-----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 335 ALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 335 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
++..|.+++.. ...+...+..+|..+++.+++.+|+..+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 55555555543 2344566777788888888888888887776543
No 317
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.91 E-value=79 Score=19.33 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=19.8
Q ss_pred hhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHH
Q 008550 16 LYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAI 63 (561)
Q Consensus 16 ~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 63 (561)
..++|..+++-+-.. +....-+-......+..+|+|++|+
T Consensus 21 cH~EA~tIA~~L~~~--------~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQE--------ECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTS--------STTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHccchHhHhh
Confidence 466777777666543 1222234556677889999999886
No 318
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.26 E-value=7.2e+02 Score=27.40 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHH
Q 008550 448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 448 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 502 (561)
++.+..+.....+-....|+|..|++++.++++..|.-+.+..++.++..+|-..
T Consensus 1280 d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l~w~h 1334 (1354)
T 3lxu_X 1280 DANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAINGALGHEH 1334 (1354)
T ss_dssp CTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSCHH
T ss_pred ccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCHH
Confidence 3444444444444445678888888888888877776677777777777777443
No 319
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.02 E-value=95 Score=22.54 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERY 478 (561)
Q Consensus 465 ~g~~~~A~~~~~~~ 478 (561)
.|+.+.|+.+|++.
T Consensus 35 ~g~k~~Al~lYk~G 48 (116)
T 2dl1_A 35 LGQKEEAKNYYKQG 48 (116)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 35555554444443
No 320
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.74 E-value=3.9e+02 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHhc-----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 335 ALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 335 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
++..|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 45555555542 2344566777777888888888888887776443
No 321
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.62 E-value=3.3e+02 Score=23.25 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALR-----LEPGYLG---AALALAELHV-IEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~~~~ 480 (561)
+.|...|+.|.. +.|.+|- ...+.+..|+ -+++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445544432 4555543 2233333333 35667766666555543
No 322
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.61 E-value=3.3e+02 Score=23.26 Aligned_cols=46 Identities=28% Similarity=0.306 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHH----hCCCCHH---HHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALR----LEPGYLG---AALALAELHV-IEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~~~~ 480 (561)
+.|...|+.|.. +.|.+|- ...+.+..|+ -+++.++|..+.++++.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666664 4555653 2233333333 36777777777666654
No 323
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.61 E-value=2.5e+02 Score=21.81 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChh
Q 008550 107 ENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNR 158 (561)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (561)
|..-.+.-+...+-..+|...+..++.+....-.....+.+|..|....++.
T Consensus 7 P~q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls 58 (161)
T 2ynq_A 7 PKQEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLT 58 (161)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSC
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCC
Confidence 3445566677778899999999999998666555678899999998877654
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.43 E-value=39 Score=27.26 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKV 258 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 258 (561)
..+++..|.+++|.+++++....++++......|..+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5677888999999999998887776665555444444
No 325
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.14 E-value=1.2e+02 Score=28.55 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=30.4
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
.-..+..++.++|++|+-.|+|++|+...++++..
T Consensus 185 gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 185 GRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34456678899999999999999999999999975
No 326
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.89 E-value=99 Score=21.40 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcCCccH
Q 008550 504 ALSHYEAALRINSQNE 519 (561)
Q Consensus 504 A~~~~~~al~~~p~~~ 519 (561)
|++.|..+++..|+..
T Consensus 41 Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 41 GIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHCCCHH
Confidence 3344444444454433
No 327
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=23.59 E-value=62 Score=17.40 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHhhc
Q 008550 57 REYRRAIHTYKQALQYY 73 (561)
Q Consensus 57 ~~~~~A~~~~~~al~~~ 73 (561)
+-|++|+..|+.+++..
T Consensus 16 KayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 16 KAYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45899999999998864
No 328
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=22.57 E-value=3.6e+02 Score=23.01 Aligned_cols=160 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHh-cCCHhHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSID---PYIMTYMDEYAMLLKV-KCDYSKLSKLVHDLLSIDP-SRPEVFVALSVL 326 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 326 (561)
+..++.+..+.++|++...+++++.+.+ .-+.+-...+..+|-. .|....+...+..+-+... ........+..-
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~~i~~ 90 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIRE 90 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q ss_pred HHhcCHhHHHHHHHHHHhc-----------cCCChhHHHHHHHHHHhcCCh----------hHHHHHHHHhHHh-----C
Q 008550 327 WERKDERGALSYAEKSIRI-----------DERHIPGYIMKGNLLLSMKRP----------EAAVIAFRGAQEL-----R 380 (561)
Q Consensus 327 ~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~-----~ 380 (561)
|...=-.+-...+...+.+ .......+...|..|.-.-.+ +.|...|+.+..+ .
T Consensus 91 yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 170 (260)
T 1o9d_A 91 YRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELA 170 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred CChHHHHHH-----HHHHHhcCCHHHHHHHHHHHHH
Q 008550 381 PDLRSYQGL-----VHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 381 ~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|.++...++ ...|.-.+++++|..+.++++.
T Consensus 171 pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 171 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 329
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.83 E-value=1.4e+02 Score=28.24 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=30.5
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
.-..+..++.++|++|+-.|+|++|+...++++..
T Consensus 191 gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 191 GKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp TSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34556678999999999999999999999999975
No 330
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.71 E-value=3.6e+02 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALR-----LEPGYLG---AALALAELHV-IEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~~~~ 480 (561)
+.|...|+.|+. +.|.+|- ...+.+..|+ -.|+.++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666653 4666653 2233333333 36777777776666554
No 331
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.91 E-value=4.9e+02 Score=23.86 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+...++..+...|+.++|...++++-..- .+. ..+...+..+...+++..+....-..+.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455666666677777766666654321 111 3455556666667777666655555543
No 332
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.21 E-value=1.8e+02 Score=23.61 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
....++.+.|.+++|.+.+++....++.+......|..+-...
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~K 164 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQK 164 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHcc
Confidence 3455788899999999999999888877766555555444433
No 333
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.09 E-value=1.6e+02 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
-..+..++.++|++|+-.|+|++|+...++++...
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 44566789999999999999999999999999763
Done!