Query 008552
Match_columns 561
No_of_seqs 292 out of 1629
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 8.5E-54 1.8E-58 450.3 52.7 431 97-554 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.9E-49 4.2E-54 421.0 54.0 440 94-560 21-477 (478)
3 PRK00187 multidrug efflux prot 100.0 1.1E-48 2.4E-53 415.0 51.2 430 97-552 5-453 (464)
4 PRK09575 vmrA multidrug efflux 100.0 1.9E-47 4.1E-52 404.8 51.8 421 96-541 6-434 (453)
5 PRK10367 DNA-damage-inducible 100.0 2.6E-47 5.6E-52 401.0 52.1 412 100-541 7-429 (441)
6 PRK01766 multidrug efflux prot 100.0 1.3E-45 2.9E-50 392.1 50.9 425 98-549 8-446 (456)
7 TIGR01695 mviN integral membra 100.0 1.4E-35 3.1E-40 319.5 51.9 412 104-543 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.2E-33 2.5E-38 303.6 49.7 406 105-542 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.9E-33 4.1E-38 287.8 41.1 334 110-468 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 6.1E-35 1.3E-39 304.8 29.0 430 98-555 24-462 (473)
11 PRK15099 O-antigen translocase 100.0 5.6E-32 1.2E-36 284.2 47.0 401 104-541 3-410 (416)
12 COG0728 MviN Uncharacterized m 100.0 1.8E-30 3.8E-35 269.1 51.7 421 102-544 7-438 (518)
13 PF03023 MVIN: MviN-like prote 100.0 2.9E-30 6.2E-35 272.1 49.3 389 132-545 5-405 (451)
14 PRK10459 colanic acid exporter 100.0 2.3E-25 5E-30 239.4 48.1 397 100-540 3-402 (492)
15 COG2244 RfbX Membrane protein 99.9 1.9E-22 4.1E-27 216.2 43.2 387 100-527 4-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 4E-20 8.8E-25 195.0 27.7 207 338-544 12-222 (455)
17 PRK10189 MATE family multidrug 99.9 6.7E-20 1.4E-24 195.0 27.8 206 336-541 22-235 (478)
18 PRK00187 multidrug efflux prot 99.9 2E-19 4.3E-24 191.2 28.3 203 338-541 5-213 (464)
19 PRK10367 DNA-damage-inducible 99.8 3.5E-19 7.6E-24 187.7 27.7 203 340-542 6-211 (441)
20 PRK09575 vmrA multidrug efflux 99.8 6.3E-19 1.4E-23 187.0 27.8 206 339-544 8-216 (453)
21 PRK01766 multidrug efflux prot 99.8 1.3E-18 2.8E-23 185.2 28.2 204 338-541 7-216 (456)
22 TIGR01695 mviN integral membra 99.7 4.1E-15 8.9E-20 160.4 31.6 209 98-330 219-429 (502)
23 TIGR00797 matE putative efflux 99.7 2E-15 4.4E-20 154.4 26.8 192 351-542 1-196 (342)
24 PF01943 Polysacc_synt: Polysa 99.7 2E-14 4.4E-19 141.6 31.9 270 105-410 2-273 (273)
25 PF01554 MatE: MatE; InterPro 99.7 5.5E-17 1.2E-21 147.2 10.1 161 110-295 1-162 (162)
26 PF01554 MatE: MatE; InterPro 99.7 1.3E-16 2.8E-21 144.7 7.4 160 351-510 1-161 (162)
27 PF03023 MVIN: MviN-like prote 99.6 1.5E-13 3.2E-18 145.3 30.2 209 99-331 195-405 (451)
28 TIGR02900 spore_V_B stage V sp 99.6 9.4E-14 2E-18 149.3 28.1 203 98-329 221-434 (488)
29 COG0728 MviN Uncharacterized m 99.6 3.9E-12 8.4E-17 132.9 35.1 212 99-334 229-442 (518)
30 PF13440 Polysacc_synt_3: Poly 99.5 1.5E-11 3.2E-16 119.8 30.4 247 120-409 2-251 (251)
31 PRK10459 colanic acid exporter 99.5 2E-11 4.4E-16 131.3 33.7 201 99-329 204-405 (492)
32 PRK15099 O-antigen translocase 99.5 9.1E-12 2E-16 131.0 23.5 201 97-328 210-411 (416)
33 COG2244 RfbX Membrane protein 99.4 1.4E-10 3.1E-15 124.3 26.4 187 98-314 209-396 (480)
34 KOG2864 Nuclear division RFT1 99.2 3.5E-07 7.6E-12 91.6 35.3 413 100-542 6-448 (530)
35 PF04506 Rft-1: Rft protein; 99.1 2E-07 4.3E-12 99.7 31.9 296 247-542 133-469 (549)
36 KOG1347 Uncharacterized membra 99.0 2.3E-08 5E-13 105.3 19.1 200 340-540 25-227 (473)
37 PF07260 ANKH: Progressive ank 98.5 0.00017 3.6E-09 69.9 27.5 262 100-392 9-290 (345)
38 PF14667 Polysacc_synt_C: Poly 98.4 4.6E-05 1E-09 67.4 18.1 81 249-331 2-82 (146)
39 PF04506 Rft-1: Rft protein; 98.3 7E-05 1.5E-09 80.4 21.9 215 101-331 252-472 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.0013 2.9E-08 64.2 23.0 185 346-541 2-189 (273)
41 PF14667 Polysacc_synt_C: Poly 98.0 3.1E-05 6.8E-10 68.5 9.8 80 465-544 2-81 (146)
42 KOG2864 Nuclear division RFT1 98.0 0.0042 9E-08 63.1 23.7 209 101-332 238-452 (530)
43 COG4267 Predicted membrane pro 97.9 0.033 7.3E-07 55.3 33.7 370 116-532 32-435 (467)
44 PF13440 Polysacc_synt_3: Poly 97.9 0.0053 1.1E-07 59.3 23.3 163 364-540 6-170 (251)
45 PF07260 ANKH: Progressive ank 97.4 0.07 1.5E-06 52.2 22.5 152 340-501 8-168 (345)
46 COG4267 Predicted membrane pro 89.8 25 0.00053 35.7 20.1 131 393-537 75-205 (467)
47 PTZ00370 STEVOR; Provisional 46.9 99 0.0021 30.2 7.9 26 529-554 268-293 (296)
48 PF04505 Dispanin: Interferon- 46.1 1.1E+02 0.0024 23.8 6.8 35 398-432 36-70 (82)
49 PF06609 TRI12: Fungal trichot 39.0 5.8E+02 0.012 28.3 34.9 30 427-456 317-346 (599)
50 KOG1289 Amino acid transporter 35.4 4.2E+02 0.0091 28.7 11.1 23 274-296 387-409 (550)
51 COG0798 ACR3 Arsenite efflux p 33.9 5.1E+02 0.011 26.2 27.7 97 201-300 9-105 (342)
52 PF13347 MFS_2: MFS/sugar tran 32.2 5.9E+02 0.013 26.4 14.9 22 482-503 281-302 (428)
53 COG4536 CorB Putative Mg2+ and 29.9 3.5E+02 0.0076 27.7 8.9 98 108-238 60-158 (423)
54 PF05975 EcsB: Bacterial ABC t 28.7 6.7E+02 0.014 25.9 16.3 36 197-232 90-125 (386)
55 PF01102 Glycophorin_A: Glycop 27.2 97 0.0021 26.2 4.0 28 518-545 66-93 (122)
56 PF11947 DUF3464: Protein of u 26.9 3.6E+02 0.0078 23.8 7.6 25 100-124 61-86 (153)
57 PF05975 EcsB: Bacterial ABC t 26.6 7.3E+02 0.016 25.6 14.9 36 414-449 89-124 (386)
58 COG3366 Uncharacterized protei 21.3 8.3E+02 0.018 24.4 23.2 54 270-323 245-306 (311)
59 PF04172 LrgB: LrgB-like famil 21.3 6.9E+02 0.015 23.5 16.0 44 99-142 68-112 (215)
60 PRK10739 putative antibiotic t 21.0 6.7E+02 0.014 23.2 9.3 59 403-465 21-79 (197)
61 PF01102 Glycophorin_A: Glycop 20.3 1.5E+02 0.0033 25.0 3.9 25 306-330 68-92 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=8.5e-54 Score=450.27 Aligned_cols=431 Identities=27% Similarity=0.419 Sum_probs=401.3
Q ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCC
Q 008552 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (561)
Q Consensus 97 ~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~ 176 (561)
.++..|+++++++|++++++++.+++++|+.++||+|++++|++++++++..++..+ ..|++.+++++++|++|++|
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~-~~gl~~g~~~liaq~~Ga~~-- 88 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAI-FIGLGTGTTVLVAQAIGAGD-- 88 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHcCCc--
Confidence 355789999999999999999999999999999999999999999999999999955 55899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhH
Q 008552 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~ 256 (561)
++++++...+++.++++++++..++.+.+.++++.+++.+++ +.+.+.+|+++..++.
T Consensus 89 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~ 146 (455)
T COG0534 89 --------------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGA 146 (455)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhh-hc-cchhhHHHHHHHHHHHHHHHHHHHHHhccc---
Q 008552 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTI--- 331 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~-~~-~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~--- 331 (561)
|+..++...++++|+.||+|+|++..++++++|+++|++|+++ ++ +|+.|+++||++++++.++++++++.++++
T Consensus 147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~ 226 (455)
T COG0534 147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLS 226 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999999999999999999 57 999999999999999999999999877653
Q ss_pred cc---CccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008552 332 LS---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIAS 408 (561)
Q Consensus 332 ~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~ 408 (561)
.. ..++++..+|++++.|+|..++.+.+...+...+.+++++|++.+|+|+++.++.++.++++.|++++..+++++
T Consensus 227 ~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~ 306 (455)
T COG0534 227 LFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQ 306 (455)
T ss_pred hhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 124455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhc
Q 008552 409 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGV 488 (561)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~ 488 (561)
++|++|+|++|+..+.++.++.++++..+++++++++++.++|++|+++.+.+..++++..+..++++++.+..+++||.
T Consensus 307 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~ 386 (455)
T COG0534 307 NLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGA 386 (455)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHH-HHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhchhcC
Q 008552 489 SDFSYAAYSMMAVGA-ISSVFLLYAPRV-FGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHM 554 (561)
Q Consensus 489 g~~~~~~~~~~~~~v-~~~~l~~~l~~~-~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~w~~~~~~~ 554 (561)
||+|.+++.+++... +..++.++++.. +|..|+|+++.+++.++.++..+++ ++++|+....+.
T Consensus 387 g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 452 (455)
T COG0534 387 GDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVAA 452 (455)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhc
Confidence 999999998887544 346666666666 9999999999999999999999888 667776665443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.9e-49 Score=420.98 Aligned_cols=440 Identities=18% Similarity=0.236 Sum_probs=392.1
Q ss_pred ccccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 008552 94 QSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRS 173 (561)
Q Consensus 94 ~~~~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~ 173 (561)
+..+-+..|+++++++|++++++++.+.+++|+.++|++|++++|+++++.++..+.. .+..|++.+.+++++|++|++
T Consensus 21 ~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~-~~~~gl~~g~~~lvsq~~Ga~ 99 (478)
T PRK10189 21 KSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIM-AFFAAIDLGTTVVVAFSLGKR 99 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Confidence 4444566899999999999999999999999999999999999999999999988777 445589999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC--CCCCccccHHHHHHHHH
Q 008552 174 SSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSL 251 (561)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~yl~i 251 (561)
| ++++++...+++.++++++++.+++.+.+.++++.+++ .++| +.+.+..|+++
T Consensus 100 ~----------------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~--v~~~a~~Yl~i 155 (478)
T PRK10189 100 D----------------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPE--VKALALTYLEL 155 (478)
T ss_pred C----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChH--HHHHHHHHHHH
Confidence 8 99999999999999999999999999999999999995 4555 99999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhh----ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008552 252 RAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLN 327 (561)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~----~~G~~gaa~a~~i~~~~~~~~~~~~~~ 327 (561)
..++.|+..+....++++|+.||++.+++..++..++|++++++++++. ++|+.|+++|+.+++++..++.++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 156 TVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999863 899999999999999999888776665
Q ss_pred hc-ccccCcc-------ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHH
Q 008552 328 KR-TILSIPN-------MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQA 399 (561)
Q Consensus 328 ~~-~~~~~~~-------~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~ 399 (561)
++ ++..+.+ ++...+|++++.|.|..++.+...+...+.+.+++++|++++|+|+++.++.++.+++..|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~ 315 (478)
T PRK10189 236 IGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALG 315 (478)
T ss_pred hccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2111111 233567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHH
Q 008552 400 ASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAY 479 (561)
Q Consensus 400 ~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~ 479 (561)
++..|+++|++|++|++++|+..+.+.++++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.
T Consensus 316 ~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~ 395 (478)
T PRK10189 316 SASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASW 395 (478)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhcCChhHHHHHHHHHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhchhcCCc
Q 008552 480 IFDGLHYGVSDFSYAAYSMMAVG-AISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPK 556 (561)
Q Consensus 480 ~~~~~l~a~g~~~~~~~~~~~~~-v~~~~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 556 (561)
+..++++|.||++.+++.+++.. ++..++.+++. .++|+.|+|++..+++.++.++.++++ ++++|++...+.+.
T Consensus 396 ~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~~~~~~~ 473 (478)
T PRK10189 396 VLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWKYPRPEP 473 (478)
T ss_pred HHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccCCCCCCc
Confidence 99999999999999998776653 23344444332 468999999999999999999988877 67889885555554
Q ss_pred cccc
Q 008552 557 LEIA 560 (561)
Q Consensus 557 ~~~a 560 (561)
++++
T Consensus 474 ~~~~ 477 (478)
T PRK10189 474 QKCE 477 (478)
T ss_pred cccc
Confidence 4443
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.1e-48 Score=415.01 Aligned_cols=430 Identities=18% Similarity=0.209 Sum_probs=385.6
Q ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCC
Q 008552 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (561)
Q Consensus 97 ~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~ 176 (561)
+++..|+++++++|.+++++++.+.+++|+.+++|+|++++|+++++.++.+++.. +..|++.+.+++++|++|++|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~-~~~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSI-FCVGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC--
Confidence 45578999999999999999999999999999999999999999999999988874 456999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhH
Q 008552 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~ 256 (561)
+++++++..+++.+.++++++..++++ +.++++.+++.++| +.+.+..|++++.++.
T Consensus 82 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~ 138 (464)
T PRK00187 82 --------------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFAL 138 (464)
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999998877765 56899999998877 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhh----ccchhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008552 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~----~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~ 332 (561)
|+..+....++++|+.||++++++.+++..++|+++|++|+++. ++|+.|+++|+.+++.+..+.++++++++++.
T Consensus 139 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~ 218 (464)
T PRK00187 139 PGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAY 218 (464)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999863 58999999999999998888777666543321
Q ss_pred --cC-----ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008552 333 --SI-----PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 405 (561)
Q Consensus 333 --~~-----~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~ 405 (561)
.+ ++++...+|++++.++|.+++.+.+...+.+++.+++++|++++|++++++++..+...+..+++++..++
T Consensus 219 ~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~l 298 (464)
T PRK00187 219 AAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMR 298 (464)
T ss_pred hhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12334457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC--Ch---HHHHHHHHHHHHHHHHhHHHHHHHH
Q 008552 406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS--DT---QVLGIVRSGLLFVSASQPVTAVAYI 480 (561)
Q Consensus 406 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~--~~---~v~~~~~~~l~i~~~~~~~~~~~~~ 480 (561)
++|++|++|+|++++..+.++.++++++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+
T Consensus 299 vgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v 378 (464)
T PRK00187 299 VGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTI 378 (464)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999974 44 6888899999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhchh
Q 008552 481 FDGLHYGVSDFSYAAYSMMAVG-AISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQK 552 (561)
Q Consensus 481 ~~~~l~a~g~~~~~~~~~~~~~-v~~~~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~w~~~~~ 552 (561)
..+++++.||+|.+++..++.. ++++++.+++. +++|+.|+|+++.+++.+..+..+.++++++.+|.+...
T Consensus 379 ~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (464)
T PRK00187 379 AMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKAR 453 (464)
T ss_pred HHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999888765 55666555443 468999999999999999999888888766666655443
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.9e-47 Score=404.78 Aligned_cols=421 Identities=17% Similarity=0.216 Sum_probs=385.9
Q ss_pred ccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 008552 96 CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSS 174 (561)
Q Consensus 96 ~~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~ 174 (561)
.+++..|+++++++|++++++++.+.+++|+.++|| +|++++++++++.++.++... +..+++.+.+++++|++|++|
T Consensus 6 ~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 6 MNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IGLMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHhcCCC
Confidence 345678999999999999999999999999999999 599999999999999888774 455788999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHH
Q 008552 175 SKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAI 254 (561)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~ 254 (561)
+|++++.+.+++.++++++++..++.+.++++++.+++.+++ +.+.+..|+++..+
T Consensus 85 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~ 140 (453)
T PRK09575 85 ----------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIW 140 (453)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877 89999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 008552 255 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSI 334 (561)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~ 334 (561)
+.|+..+....++++|+.|+++.+++..+.+.++|+++|+++++.+++|+.|+++|+.+++++..++.++++++++...+
T Consensus 141 ~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~ 220 (453)
T PRK09575 141 GCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIR 220 (453)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeE
Confidence 99999999999999999999999999999999999999999999889999999999999999999998877765443322
Q ss_pred c-----cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008552 335 P-----NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGA-LAMAAHQICLQVWLSVSMLADAQAASGQALIAS 408 (561)
Q Consensus 335 ~-----~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~-~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~ 408 (561)
+ ++++..+|++++.|.|..++.....+...+.+.+++++|+ +++|++++..++..+.+++..|++++..|++||
T Consensus 221 ~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~ 300 (453)
T PRK09575 221 LTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSY 300 (453)
T ss_pred EeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 2233456899999999999999999999999999999985 689999999999999999999999999999999
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC-ChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhh
Q 008552 409 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS-DTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYG 487 (561)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~-~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a 487 (561)
++|++|+|++++..+.++++++.++++.++++.++++++.++|++ |||+.+.+.+++++..++.++++++.+..++++|
T Consensus 301 ~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 380 (453)
T PRK09575 301 YFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMA 380 (453)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999995 7899999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 488 VSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 488 ~g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
.||++.++..++...++++++.+++++.+|+.|+|+++.+++.+..++..++++
T Consensus 381 ~g~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 381 VNQGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred cCCcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 999999998887776667777777766689999999999999988887776664
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=400.97 Aligned_cols=412 Identities=23% Similarity=0.272 Sum_probs=364.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRL-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 100 ~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~l-g~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
..|+++++++|++++++++.+.+++|+.++||+ |++++|+++++.++.++... +..|++.+.+++++|++|++|
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~-~~~~~~~g~~~lvsq~~Ga~~---- 81 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM-LLLFLRMSTTGLTAQAFGAKN---- 81 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCC----
Confidence 468999999999999999999999999999997 67789999999999888874 455899999999999999998
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~ 258 (561)
++++++...+++.+++++++++.++...+.++++.+++.++| +.+.+.+|+++..++.|+
T Consensus 82 ------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~ 141 (441)
T PRK10367 82 ------------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPA 141 (441)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888999999999887 999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhccccc--Ccc
Q 008552 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILS--IPN 336 (561)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~--~~~ 336 (561)
..+..++++++|+.||++.|++..++++++|+++|++|++++++|+.|+++||.+++++.+++.++++.++.+.. +.+
T Consensus 142 ~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~ 221 (441)
T PRK10367 142 SLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLE 221 (441)
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877776532211 111
Q ss_pred -cc---chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhc
Q 008552 337 -MK---NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAK 412 (561)
Q Consensus 337 -~~---~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~ 412 (561)
++ +..+|++++.+.|..++...+...+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+|+++|++|+
T Consensus 222 ~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga 301 (441)
T PRK10367 222 MLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGA 301 (441)
T ss_pred HhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 11 13578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHH----HHhHhhhc
Q 008552 413 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYI----FDGLHYGV 488 (561)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~a~ 488 (561)
+|+|++|+..+.+.+++++++...+++++++++++..+|++|+|+.+.+..++++..+..+....... ..+.++|.
T Consensus 302 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~ 381 (441)
T PRK10367 302 RDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA 381 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH
Confidence 99999999999999999999999999999999999999999999999999999998876433224443 44555554
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 489 SDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 489 g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
|+|.+++.+.+...+ ..+..+.+|+.|+|++..+++.++.++..++++
T Consensus 382 -dt~~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~ 429 (441)
T PRK10367 382 -EMRNSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR 429 (441)
T ss_pred -HHHHHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 699998877765322 122224689999999999999999999887763
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.3e-45 Score=392.15 Aligned_cols=425 Identities=20% Similarity=0.222 Sum_probs=384.3
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 98 ~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
++..|+++++++|+++++++..+.+++|+.+++++|++++++++++..+..+.. .+..|+..+..+.++|++|++|
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~-~~~~g~~~a~~~~vs~~~g~~~--- 83 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVI-LFGHGLLLALTPIVAQLNGAGR--- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC---
Confidence 456899999999999999999999999999999999999999999988877665 4455899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
++++++...+++.+.++++++++++++.+.++++.+++.+++ +.+.+..|+++.+++.|
T Consensus 84 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~ 142 (456)
T PRK01766 84 -------------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIP 142 (456)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999988876 88999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhh----hccchhhHHHHHHHHHHHHHHHHHHHHHhcccc-
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL- 332 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~----~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~- 332 (561)
+..+...+++++|+.||++++++..+++.++|+++++++++. +++|+.|+++++.+++++..++.+++++++++.
T Consensus 143 ~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~ 222 (456)
T PRK01766 143 AYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFR 222 (456)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 999999999999999999999999999999999999999864 368999999999999999999988877654321
Q ss_pred -cC-----ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008552 333 -SI-----PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALI 406 (561)
Q Consensus 333 -~~-----~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~v 406 (561)
.+ .+++...+|++++.++|..++...+...+.+++.+++++|++++|+++++.++.++..++..+++.+..+.+
T Consensus 223 ~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v 302 (456)
T PRK01766 223 DFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRV 302 (456)
T ss_pred HHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhh
Q 008552 407 ASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHY 486 (561)
Q Consensus 407 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 486 (561)
+|++|++|++++|+..+.++.++..++++.++++..+++++.++|++|+++.+.+..++++..++.++++++....++++
T Consensus 303 ~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 382 (456)
T PRK01766 303 GFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALR 382 (456)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008552 487 GVSDFSYAAYSMMAVG-AISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWF 549 (561)
Q Consensus 487 a~g~~~~~~~~~~~~~-v~~~~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~w~~ 549 (561)
|.||++.+++..++.. ++.+++.+++. +.+|+.|+|+++.+++.+..++.+++++ +.+|+.
T Consensus 383 g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 446 (456)
T PRK01766 383 GYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR--KLQRQP 446 (456)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 9999999999888765 45555544432 5689999999999999999998887773 345553
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.4e-35 Score=319.46 Aligned_cols=412 Identities=13% Similarity=0.109 Sum_probs=348.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchh-hhhhhHHHHHHHHHHHhh-hhhhhhhhHHHHHHhhhccCCCCCC
Q 008552 104 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLEL-ASAGVSTSIFNILSKVFN-IPLLSVATSFVAEDISRSSSKDSTS 180 (561)
Q Consensus 104 i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~l-aa~~~~~~i~~~~~~~~~-~gl~~~~~~~va~~~g~~~~~~~~~ 180 (561)
++|.+.-..++++++.+++++|+.+++| +|++++ ++++++.++++.+..+.. .|+..+ .+++..+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhh-----
Confidence 4677888999999999999999999999 999999 899999999988775544 344444 44444444431
Q ss_pred CCCCCCCCCCCCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHcC--CCCCccccHHHHHHHHHHHHhHH
Q 008552 181 DSSCPNVSYNGCDESTDRKLLPSVSTALVLALT-IGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
+++.++...+.+....+ .+++..++.+.+++++..+++ .+++ ..+.+..|+++.+++.|
T Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~ 135 (502)
T TIGR01695 74 ----------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADE--TRSLAVSLTRIMFPYLL 135 (502)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHH
Confidence 23455556665555554 444456777788888988884 3444 77899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHH--HHHHHHHHHHHHHHHHHHHhcccccCc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAA--ISTVGSQYMVTLLMIWYLNKRTILSIP 335 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa--~a~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (561)
+..+....++++|+.+|++.+++.+++.++++++..+++ ..++|+.|++ +++++++.+..++.+++++|++.+.++
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
T TIGR01695 136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP 213 (502)
T ss_pred HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 999999999999999999999999999988877643333 3578999988 999999999999888777665433333
Q ss_pred --cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhhhhc
Q 008552 336 --NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSM-LADAQAASGQALIASSFAK 412 (561)
Q Consensus 336 --~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~-~~~al~~a~~p~vs~~~g~ 412 (561)
++++..+|++++++.|..+..+..++...+|+.+.+.+|++++++|+.+.++..++.. +..+++++..|.+++++|+
T Consensus 214 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 214 RFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345678999999999999999999999999999888899999999999999988874 6789999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC----ChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhc
Q 008552 413 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS----DTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGV 488 (561)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~ 488 (561)
+|++++++..+++.++...+++|.++++.++++++..+|.+ |++..+.+..++++++++.++.+++..+.+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 373 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYAR 373 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Confidence 99999999999999999999999999999999999999876 56778889999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008552 489 SDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSK 543 (561)
Q Consensus 489 g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 543 (561)
||+|.+++......+++.++++++++.+|..|+|+++.+++.+..++..++++++
T Consensus 374 g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 374 KDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888888888887889999999999999999988887777544
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.2e-33 Score=303.57 Aligned_cols=406 Identities=14% Similarity=0.181 Sum_probs=347.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCC
Q 008552 105 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 183 (561)
Q Consensus 105 ~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~ 183 (561)
.+.+.|.+++++++.+.+++|+.+++| +|++++|+++.+.++.+++..+...|++.+....++|..+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 356899999999999999999999999 8999999999999999998877778999999999999988887
Q ss_pred CCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHH
Q 008552 184 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 263 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~ 263 (561)
+++.++.+.+.+.+.++++++..++++.+++++...++.+++ ...++++..+..++..+..
T Consensus 73 -------------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~ 133 (488)
T TIGR02900 73 -------------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSS 133 (488)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999998888888888877765543 3467888999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhh-----hccchhhHHHHHHHHHHHHHHHHHHHHHhccc-ccCc--
Q 008552 264 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI-LSIP-- 335 (561)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~-----~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~-~~~~-- 335 (561)
..++++|+.+|++..+..++++.++++.++..++.. ..+|+.|+++++.+++++..++.+++++|+.+ +.++
T Consensus 134 ~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T TIGR02900 134 VLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPF 213 (488)
T ss_pred HHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999998776666543 24678889999999999999988766554332 1111
Q ss_pred ----cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----C---hhHHHHH----HHHHHHHHHHHHhHHHHHH
Q 008552 336 ----NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ----G---ALAMAAH----QICLQVWLSVSMLADAQAA 400 (561)
Q Consensus 336 ----~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~----g---~~~~aa~----~i~~~i~~l~~~~~~al~~ 400 (561)
+.++..+|++++++.|.+++++...+...+|+.++++. | .++.+.+ +++.++..++..+..++++
T Consensus 214 ~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~ 293 (488)
T TIGR02900 214 FDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLST 293 (488)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHH
Confidence 11234678999999999999999999999999988764 2 1222222 3556777888888899999
Q ss_pred HHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008552 401 SGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYI 480 (561)
Q Consensus 401 a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~ 480 (561)
+..|.+++++|++|.++.++..++.+++...+++|.++++..+++++..+|.++++ +..+++++++..++..++..
T Consensus 294 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~ 369 (488)
T TIGR02900 294 ALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAP 369 (488)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876543 45789999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 481 FDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLS 542 (561)
Q Consensus 481 ~~~~l~a~g~~~~~~~~~~~~~v~~~~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 542 (561)
..+++++.||+|..++.+++..+++.++++.+. +.+|+.|+|+++.+++.+..++.++..++
T Consensus 370 ~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 370 LQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888887765 88999999999999999999888877743
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.9e-33 Score=287.79 Aligned_cols=334 Identities=31% Similarity=0.492 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCCCCCCCC
Q 008552 110 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 189 (561)
Q Consensus 110 p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~ 189 (561)
|.++++++..+...+|+.+++++|++++++++++..+.++.. .+..|++.+..+.+++++|++|
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLF-SILMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHH-HHHHHHHHhHHHHHHHHHCCCC---------------
Confidence 788999999999999999999999999999999988877776 4566899999999999999988
Q ss_pred CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008552 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 269 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l 269 (561)
+++.++..++.+.+..+++++.+++++.+++++..+++.+++ ..+.+..|+++++++.++..+....++++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 135 (342)
T TIGR00797 65 -------YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFL 135 (342)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999986665 78889999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhHHHHHHh-hhc-cchhhHHHHHHHHHHHHHHHHHHHHHhcccc-c----Cccccchhh
Q 008552 270 RGFKDTRTPVFCLGLGNFSAVFMFPMLMY-YFK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTIL-S----IPNMKNLHF 342 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~v~i~l~~lli~-~~~-~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 342 (561)
|+.||++.+++.++++.++++++++++++ .++ +|+.|+++++.+++++..++.+++.+|+.+. . +.++++..+
T Consensus 136 ~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (342)
T TIGR00797 136 RGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVL 215 (342)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHH
Confidence 99999999999999999999999999987 567 8899999999999999999888777653221 1 234455678
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhHHHHHH
Q 008552 343 GDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEIT 422 (561)
Q Consensus 343 ~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~~~~~~ 422 (561)
|+++++++|.++.++..++...+++.+++.+|++++++|+++.++.++..++..+++++..|.++++++++|++++++..
T Consensus 216 k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T TIGR00797 216 KRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVA 295 (342)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHH
Q 008552 423 HFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFV 468 (561)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~ 468 (561)
++++++.+.++++.++++.++++++.++|++||++.+.+..++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 296 RVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=304.84 Aligned_cols=430 Identities=19% Similarity=0.222 Sum_probs=385.0
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 98 ~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
..+.|++++++.|+++..+.++..+++++.++||+|+.++++.+++++..+....-+..|+.++..++++|++|.++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~--- 100 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK--- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc---
Confidence 46779999999999999999999999999999999999999999999999997766777999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
++....+.+++..+....+++...+ +.+.++++..++++++ +...+..|.++..+.++
T Consensus 101 -------------------~~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~ 158 (473)
T KOG1347|consen 101 -------------------FTALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLF 158 (473)
T ss_pred -------------------cchhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChh--HHHHHhhhHhhhcchhh
Confidence 8888999999999988888888776 4566999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc-c--ccC
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT-I--LSI 334 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~-~--~~~ 334 (561)
.+......+.++|++++..+..++.....++|+.+++++++.+++|..|++++..+++++...++..+..... . +..
T Consensus 159 a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~ 238 (473)
T KOG1347|consen 159 SYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSG 238 (473)
T ss_pred hhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988875543 1 111
Q ss_pred ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhc
Q 008552 335 PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQG--ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAK 412 (561)
Q Consensus 335 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g--~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~ 412 (561)
+.++..+++++++++.|..++...+++.+.+...+.+.++ ..++++.++..++....++.+.+++.+..+++++.+|+
T Consensus 239 ~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGa 318 (473)
T KOG1347|consen 239 FSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGA 318 (473)
T ss_pred hhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcC
Confidence 2223567889999999999999999999999999999997 58999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChh
Q 008552 413 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFS 492 (561)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~ 492 (561)
++++++|.........++.+++..+..+....+.+..+|++|+++.+.+.+..++++++.++++.+.++.++.++.|.++
T Consensus 319 g~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~ 398 (473)
T KOG1347|consen 319 GKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQ 398 (473)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhchhcCC
Q 008552 493 YAAYSMMA----VGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMP 555 (561)
Q Consensus 493 ~~~~~~~~----~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 555 (561)
...+.+.. .+++....+.+ ..++|..|+|+++..+..+......+.. .+.+|.+...+.+
T Consensus 399 ~ga~vnl~~yyl~G~p~g~~l~~-~~~~g~~glw~G~~~~~~~~~~~l~~~~--~~tdW~~~~~~a~ 462 (473)
T KOG1347|consen 399 IGAVINLVAYYLVGAPVGLYLGF-FTKFGVKGLWIGILLGFSVQTLVLAIVT--ARTDWKNQAEKAF 462 (473)
T ss_pred ceEEEeeeeeeEecCcceeEEEE-EEecCceEEEeehHHHHHHHHHHHHHhe--eeccHHHHHHHHH
Confidence 88764443 34333333332 3679999999999999666666555443 6789988776543
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.6e-32 Score=284.19 Aligned_cols=401 Identities=15% Similarity=0.098 Sum_probs=341.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCC
Q 008552 104 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDS 182 (561)
Q Consensus 104 i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~ 182 (561)
++|.+.....++++..+.+++-..+++| +|++++|.++...++...+..+...|++.+.+..++|. ++|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5577778888999999999999999999 99999999999999999888777888888888888876 333
Q ss_pred CCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHH
Q 008552 183 SCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLS 262 (561)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~ 262 (561)
+++.++...+++.+.++.+++++++++.+.+|+...++.+++ ...+..+..+..++..+.
T Consensus 73 --------------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 73 --------------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWA 132 (416)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999988876553 346667777777788888
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhccc-c---cCcccc
Q 008552 263 LAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI-L---SIPNMK 338 (561)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~-~---~~~~~~ 338 (561)
...++.+|+.||++.++...+++.++|+.+ +++... ..|+.|+++|+++++.+..+..++++.|+++ + .+++++
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWD 210 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCC
Confidence 999999999999999999999999999887 444443 2499999999999999998877776655432 1 133444
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhhhhhcCChh
Q 008552 339 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAA-RQGALAMAAHQICLQVWLS-VSMLADAQAASGQALIASSFAKGDYN 416 (561)
Q Consensus 339 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~-~~g~~~~aa~~i~~~i~~l-~~~~~~al~~a~~p~vs~~~g~~~~~ 416 (561)
+..+|+++++|.|..++++...+...+++.+++ .+|+++++.|+++.++... ...+..+++++..|.++++ +|.+
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 556899999999999999999999999999996 8899999999999999775 4788999999999999995 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHH
Q 008552 417 TVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAY 496 (561)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 496 (561)
+.++..++.......+.++.+++++++++++..+|.+|+ .+.+.++++++.+..++...+..+...+.+.++++....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765 333567888888888888888887777778888888888
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 497 SMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 497 ~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
..+...+++.++++++++.+|..|+++++.+++.+..++..+...
T Consensus 366 ~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777788888888889999999999999999999887776653
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=269.08 Aligned_cols=421 Identities=13% Similarity=0.069 Sum_probs=362.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcch-hhhhhhHHHHHHHHHHHhhhh-hhhhhhHHHHHHhhhccCCCC
Q 008552 102 LDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLE-LASAGVSTSIFNILSKVFNIP-LLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 102 ~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~-laa~~~~~~i~~~~~~~~~~g-l~~~~~~~va~~~g~~~~~~~ 178 (561)
+.+++.++-....++++++.+++...+++. +|+.. -+|+.++..++|++..+++.| ++++..+...++..++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~---- 82 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEG---- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcch----
Confidence 567788888889999999999999999999 99965 578999999999999999987 56667777777655443
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCC-CccccHHHHHHHHHHHHhHH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS-ASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~a~~yl~i~~~~~~ 257 (561)
.++.++.......+...+.+.++++..++++++.+.+..+. ++.....+....+++.|.++
T Consensus 83 ------------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~ 144 (518)
T COG0728 83 ------------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLL 144 (518)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Confidence 44555555555557777777788888888888885543332 11123368888899999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNM 337 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 337 (561)
+..+.....+++|..+|+..|.+.++..|+.-|.....+..+...-..+.+++++++-+++.++.+..++|.+...++++
T Consensus 145 ~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~ 224 (518)
T COG0728 145 FISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF 224 (518)
T ss_pred HHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 99999999999999999999999999999888855555544433347789999999999999999999988775555554
Q ss_pred --cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhcCC
Q 008552 338 --KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGD 414 (561)
Q Consensus 338 --~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~-~~~~al~~a~~p~vs~~~g~~~ 414 (561)
++...|++++...|..+.....++...+++.+++.+.+..++.+..++++++++. .+..++++...|.+|++..++|
T Consensus 225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~ 304 (518)
T COG0728 225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD 304 (518)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4468999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC----CChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCC
Q 008552 415 YNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFT----SDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSD 490 (561)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~----~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~ 490 (561)
.++.++..++++++++++.+|.++++.++++|+.+++. .++++.......+..++++.++..+..++...+|+.+|
T Consensus 305 ~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d 384 (518)
T COG0728 305 WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARED 384 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999773 36777888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008552 491 FSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKN 544 (561)
Q Consensus 491 ~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 544 (561)
+|.|+++.++..+++..++.++.+.+|..|+++++.++..++..+.++.++++.
T Consensus 385 ~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 385 TKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888899999999999988888888887775443
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2.9e-30 Score=272.08 Aligned_cols=389 Identities=15% Similarity=0.138 Sum_probs=345.7
Q ss_pred cCcch-hhhhhhHHHHHHHHHHHhhh-hhhhhhhHHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHH
Q 008552 132 LGPLE-LASAGVSTSIFNILSKVFNI-PLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALV 209 (561)
Q Consensus 132 lg~~~-laa~~~~~~i~~~~~~~~~~-gl~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (561)
+|+.+ .+++.++..+++++..++.. ++..+..|...+.. +++ +++.++..++.+.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~----------------------~~~~~~f~~~~~~ 61 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG----------------------EEEARRFISTLLT 61 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----------------------HHHHHHHHHHHHH
Confidence 66654 67899999999999877653 36677777777766 443 6777888899999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008552 210 LALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA 289 (561)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 289 (561)
+..++.++++++.+++++++..++....+++..+.+.++++++++..++..+..++.+++|+++|+..|...+++.++..
T Consensus 62 ~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~ 141 (451)
T PF03023_consen 62 ILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI 141 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999966655568899999999999999999999999999999999999999999988877
Q ss_pred HhHHHHHHhhhccc---hhhHHHHHHHHHHHHHHHHHHHHHhcccccCc--cccchhhHHHHHhhHHHHHHHHHHHHHHH
Q 008552 290 VFMFPMLMYYFKLG---VTGAAISTVGSQYMVTLLMIWYLNKRTILSIP--NMKNLHFGDYLRSGGYLLGRTLAAVMTIT 364 (561)
Q Consensus 290 i~l~~lli~~~~~G---~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 364 (561)
++...++. ...| +.+.++|.++|..++.++.+...+|.+.+.++ +++++..|++++...|.++.....++...
T Consensus 142 I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~l 219 (451)
T PF03023_consen 142 ILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINIL 219 (451)
T ss_pred HHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66444333 3466 89999999999999999999998877655444 45566789999999999999999999999
Q ss_pred HHHHHHHhhChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 365 LSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGAS 443 (561)
Q Consensus 365 ~~~~~i~~~g~~~~aa~~i~~~i~~l~~-~~~~al~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (561)
+++.+++.+++..+++++.+.++.+++. .+..+++++..|.+++...++|.++.++..++.++..+.+.+|.++.+..+
T Consensus 220 v~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~ 299 (451)
T PF03023_consen 220 VDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVL 299 (451)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC----CChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHHHHHHHHHHHhccccchh
Q 008552 444 FNYLATLFT----SDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLS 519 (561)
Q Consensus 444 ~~~i~~lf~----~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~ 519 (561)
++++++++. .|.+..+....++.+++++.++++++.++.+.+++.+|+|.+++.+++..+++..+..++.+.+|..
T Consensus 300 a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~ 379 (451)
T PF03023_consen 300 AEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVA 379 (451)
T ss_pred hHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 3778889999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008552 520 AVWWGLTLFMSLRVAAGYFRLLSKNG 545 (561)
Q Consensus 520 G~~~a~~i~~~~~~~~~~~~~~~~~~ 545 (561)
|+++++.++..+..++.++.++++.+
T Consensus 380 Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 380 GLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888865544
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=2.3e-25 Score=239.39 Aligned_cols=397 Identities=12% Similarity=0.072 Sum_probs=325.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 100 ~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
..++..+-+....++++...+.+++...+++| +|++++|.++.+.++.+++..+..+|++.+. .| +++ +
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~----~~~-~- 72 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ----RQD-I- 72 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh----ccc-C-
Confidence 34677788888999999999999999999999 9999999999999999999988887766543 22 210 0
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~ 258 (561)
.+ +...+.+++.++.++++.++.+.+++++...++.++ ....+++.++..++
T Consensus 73 ------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~ 124 (492)
T PRK10459 73 ------------------SH---LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNPE-------LAPLIKTLSLAFVI 124 (492)
T ss_pred ------------------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-------hHHHHHHHHHHHHH
Confidence 11 234556677777787777777777777776665442 44677888888888
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Q 008552 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMK 338 (561)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (561)
..+.....+.+|..++++.......+..++..++...+.. .++|+.+..++..+++.+..++.++..++ +.+.+++++
T Consensus 125 ~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 202 (492)
T PRK10459 125 IPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPALHFS 202 (492)
T ss_pred HHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccceec
Confidence 8888899999999999999998888888877776665554 47899999999999998887765443333 222233445
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhhhhcCChh
Q 008552 339 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSM-LADAQAASGQALIASSFAKGDYN 416 (561)
Q Consensus 339 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~aa~~i~~~i~~l~~~-~~~al~~a~~p~vs~~~g~~~~~ 416 (561)
+..+|++++++.|.+...+...+...+|+.+++++ |+++++.|+.+.++.+++.. +...+++...|.+++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 56789999999999999999999999999998876 99999999999999988764 4556888999999885 67889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHH
Q 008552 417 TVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAY 496 (561)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 496 (561)
+.++..++..++...+++|+.+++.++++++..++.+++ .+.+...++++++..++..+......++++.||+|..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 999999999999999999999999999999998887654 455779999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008552 497 SMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRL 540 (561)
Q Consensus 497 ~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~ 540 (561)
.+++..++..+..+.+.+.+|+.|+++++.+++.+..++.++..
T Consensus 359 ~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777766666778999999999999998888877766
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=1.9e-22 Score=216.19 Aligned_cols=387 Identities=17% Similarity=0.159 Sum_probs=307.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 100 ~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
..+++.+.+.-...+++...+.+++....++| +|++++|.++.+.++.+++..+..+|+..+....++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 45788899999999999999999999999999 9999999999999999999988888888888888877654443
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPS-VSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
+...... ....+.+.+..+++.........+. + +.....+++..+..+
T Consensus 80 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~ 128 (480)
T COG2244 80 ------------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------D------PVLALLLRILSLALL 128 (480)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C------hhhHHHHHHHHHHHH
Confidence 3333333 3333333333333322222221111 1 135566788999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHH-hcccccCcc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLN-KRTILSIPN 336 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~-~~~~~~~~~ 336 (561)
........++++|+.++++...+..+.. ..-......+. ........++..++............. ++.+..++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (480)
T COG2244 129 LLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI 204 (480)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999999999884444 11111111121 133445566666666666666555553 233233333
Q ss_pred cc--chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcC
Q 008552 337 MK--NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKG 413 (561)
Q Consensus 337 ~~--~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~ 413 (561)
++ ...++++++.+.|..+..+...+...+|+.+++++ |+++++.|+.++++......+..+++++..|.+++.+.++
T Consensus 205 ~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~ 284 (480)
T COG2244 205 LRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEG 284 (480)
T ss_pred cCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 57789999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhH
Q 008552 414 DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSY 493 (561)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~ 493 (561)
|.++.++..++..++...+++|..+++.++++++..++..++.. .+...++++++..++.++.......+++.|+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~ 362 (480)
T COG2244 285 DRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRL 362 (480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 99999999999999999999999999999999999988765532 2678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 008552 494 AAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTL 527 (561)
Q Consensus 494 ~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i 527 (561)
.++...+..+.+..+++.+++.+|..|+.+++..
T Consensus 363 ~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 363 LLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999933
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=4e-20 Score=194.99 Aligned_cols=207 Identities=16% Similarity=0.177 Sum_probs=196.9
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhH
Q 008552 338 KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 417 (561)
Q Consensus 338 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~ 417 (561)
.+..+|+++++++|.++.++.......+|+.++++++++++|+-+++++++.++..+..+++.+..+.++|++|++|+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHH
Q 008552 418 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 497 (561)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 497 (561)
+++...+++.++++++++.+++...+.+++..++..++|+.+.+.+|+++..++.++..+...+.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008552 498 MMAVGAISSVFLLYAPRV----FGLSAVWWGLTLFMSLRVAAGYFRLLSKN 544 (561)
Q Consensus 498 ~~~~~v~~~~l~~~l~~~----~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 544 (561)
.++..++|+.++++++.. +|+.|+++|+.+++.+..++..+++.+++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999888777654 89999999999999999999888886554
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=6.7e-20 Score=195.03 Aligned_cols=206 Identities=17% Similarity=0.129 Sum_probs=188.9
Q ss_pred cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCh
Q 008552 336 NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDY 415 (561)
Q Consensus 336 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~ 415 (561)
.|+...+|+++++++|.+++++.......+|+.+++++|++++|++++++++..+...+..+++++..++++|++|++|+
T Consensus 22 ~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 22 SYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC--CChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhH
Q 008552 416 NTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFT--SDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSY 493 (561)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~--~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~ 493 (561)
|++++..+.++.++++++++.+++...+++++..+|. .|+|+.+.+..++++..++.++.++...+.+++++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 494 AAYSMMAVGAISSVFLLYAP------RVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 494 ~~~~~~~~~v~~~~l~~~l~------~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
+++..++..++++++.++++ +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 182 ~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 182 PLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887777766655443 3689999999999999988877655553
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.86 E-value=2e-19 Score=191.18 Aligned_cols=203 Identities=16% Similarity=0.123 Sum_probs=185.5
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhH
Q 008552 338 KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 417 (561)
Q Consensus 338 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~ 417 (561)
++..+|++++.++|.++.++...+...+|+.+++++|++++|+++++.++.++...+..+++++..+.++|++|++|+++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHH
Q 008552 418 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 497 (561)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 497 (561)
+++..+.++.+.++++++..+++. +.+++..+|+.|+|+.+.+..++++..++.++..+...+.+.+++.||++.+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999998877765 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 498 MMAVGAISSVFLLYAP------RVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 498 ~~~~~v~~~~l~~~l~------~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
.++..++++++.++++ +.+|+.|+++|+.++..+..+...++++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~ 213 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIR 213 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888766644 3489999999999988777665555443
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=3.5e-19 Score=187.69 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=187.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhHH
Q 008552 340 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTV 418 (561)
Q Consensus 340 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~~ 418 (561)
.+.|+++++++|.+++++...+...+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.++|++|++|++++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~ 85 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQAL 85 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 3478999999999999999999999999999999 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHH
Q 008552 419 KEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM 498 (561)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 498 (561)
++..++++.++++++++..++...+.+++..+++.|+|+.+.+.+|+++..++.++..+...+.+++++.||+|.+++..
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ 165 (441)
T PRK10367 86 ARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILL 165 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 499 MAVGAISSVFLLYAPR--VFGLSAVWWGLTLFMSLRVAAGYFRLLS 542 (561)
Q Consensus 499 ~~~~v~~~~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 542 (561)
++..+++++++++++. ++|+.|+++|+.+++.+..++..+++.+
T Consensus 166 ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 166 VVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888887766543 6899999999999999888776665543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.84 E-value=6.3e-19 Score=186.99 Aligned_cols=206 Identities=15% Similarity=0.034 Sum_probs=190.8
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhH
Q 008552 339 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 417 (561)
Q Consensus 339 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~ 417 (561)
+..+|++++.++|.+++++...+...+|+.+++++ |++++++++++.++..+...+..+++.+..+.++|++|++|+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34578999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHH
Q 008552 418 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 497 (561)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 497 (561)
+++..++++.++++++++.++++..+++++..+|+.|+++.+.+.+++++..++.++..+...+.+++++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008552 498 MMAVGAISSVFLLYAPR--VFGLSAVWWGLTLFMSLRVAAGYFRLLSKN 544 (561)
Q Consensus 498 ~~~~~v~~~~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 544 (561)
+++..++++++.+++++ ++|+.|+++++.+++.+..++.++++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~ 216 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSR 216 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 98888888877666643 689999999999999999888776664443
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.84 E-value=1.3e-18 Score=185.17 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=189.4
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhH
Q 008552 338 KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 417 (561)
Q Consensus 338 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~ 417 (561)
.+..+|+++++++|.+++.+...+...+|+.+++++|++++++++++.++..+...+..+++++..|.+++++|++|+++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 34568899999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHH
Q 008552 418 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 497 (561)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 497 (561)
+++..+.++.+.++++++.++++..+++++..++..|+++.+.+..++++.+++.++..+...+.+++++.||+|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 498 MMAVGAISSVFLLYAP------RVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 498 ~~~~~v~~~~l~~~l~------~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
..+..+++++++++++ +.+|+.|+++++.+++.+..++.+++++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~ 216 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIK 216 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877766554 4589999999999999998888776664
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=4.1e-15 Score=160.38 Aligned_cols=209 Identities=19% Similarity=0.243 Sum_probs=187.2
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 98 ~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
++..|++++.++|..++++...+...+|+.+.+++|++++++++.+..+.++...++..+++.+..+.+++.++++|
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~--- 295 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN--- 295 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 34679999999999999999999999999885559999999999999998887766666789999999999999988
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCC--CccccHHHHHHHHHHHHh
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS--ASSMRIPAQRFLSLRAIG 255 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~yl~i~~~~ 255 (561)
.++.++...+++.+...++++.++++..+++++..++.+++ +++..+.+..++++.+++
T Consensus 296 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~ 356 (502)
T TIGR01695 296 -------------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLG 356 (502)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999886532 223677899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008552 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT 330 (561)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~ 330 (561)
.++..+.......+++.||++.+++..+...++|++++++++. .+|+.|+++++.+++.+..++..++++|+.
T Consensus 357 ~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 357 LIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998874 579999999999999999999888876654
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.72 E-value=2e-15 Score=154.40 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHH
Q 008552 351 YLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGL 430 (561)
Q Consensus 351 p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~ 430 (561)
|.++..+...+...+++.+++++|++++++++++.++..+...+..+++++..|.+++++|++|+|++++..+....+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 008552 431 FTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLL 510 (561)
Q Consensus 431 ~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v~~~~l~~ 510 (561)
.++++.++++.++++++..+++.|++..+.+..+++++.++.++.++.....+++++.||.+..++.+++..+++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888899999999999999999999999999999999999998888777766555
Q ss_pred Hhcc---c-cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 511 YAPR---V-FGLSAVWWGLTLFMSLRVAAGYFRLLS 542 (561)
Q Consensus 511 ~l~~---~-~G~~G~~~a~~i~~~~~~~~~~~~~~~ 542 (561)
++.. + +|+.|+++++.++..+..++.+++.++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 3 569999999999999988887766643
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.72 E-value=2e-14 Score=141.59 Aligned_cols=270 Identities=17% Similarity=0.225 Sum_probs=205.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCC
Q 008552 105 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 183 (561)
Q Consensus 105 ~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~ 183 (561)
.|.+.-...+++...+.+++...++.| +|++++|.++...++.+++..+..+|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 466777889999999999999999999 99999999999999999998777888777776666654222
Q ss_pred CCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHH
Q 008552 184 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 263 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~ 263 (561)
.++.+......+...++.+++..++. .+...++.++. ...+........++.....
T Consensus 71 -------------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 126 (273)
T PF01943_consen 71 -------------KELRSAYFSSVLFLLLIFSLIFLLIL-----LIASFFGNPSL------SLILIILALLILILSSLSS 126 (273)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCchH------HHHHHHHHHHHHHHHHHHH
Confidence 12333344444443333333332222 22224443332 2333333333335788888
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccCccccchhhH
Q 008552 264 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFG 343 (561)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (561)
....++++.++.+...+..+...++..++..+++.. +.++.+..++..++..+..++..+..+|+.+..+...++...|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFK 205 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHH
Confidence 999999999999999999999988888776666654 4458899999999999998888888876554333334466789
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 008552 344 DYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSF 410 (561)
Q Consensus 344 ~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~ 410 (561)
++++.+.|..+..+...+....|+.+++.+ |+++++.|+++.++...+..+..++.++..|.+++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 206 EILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988 9999999999999999999999999999999998853
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=5.5e-17 Score=147.16 Aligned_cols=161 Identities=24% Similarity=0.413 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCCCCCCCC
Q 008552 110 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 189 (561)
Q Consensus 110 p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~ 189 (561)
|.+++++++.+...+|+.+++++|++++++++++..+.++... +..|++.+..++++|.+|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh-hcccccccccceeeccccccc---------------
Confidence 8999999999999999999999999999999999999999995 566999999999999999998
Q ss_pred CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008552 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 269 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l 269 (561)
++++++.++.++.+.+++++++.+++..+.+++..+++.+++ +.+.+.+|+++..+..|+..+....++++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 65 -------YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp -------TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred -------ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999888 99999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHH-HHHHhHHHH
Q 008552 270 RGFKDTRTPVFCLGLGN-FSAVFMFPM 295 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~-~v~i~l~~l 295 (561)
|+.||++.+++..+... +++++++|+
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 136 QGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp GCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999998 999998875
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.66 E-value=1.3e-16 Score=144.73 Aligned_cols=160 Identities=25% Similarity=0.334 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHH
Q 008552 351 YLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGL 430 (561)
Q Consensus 351 p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~ 430 (561)
|..++++...+...+++.+++++|+++++++++..++.++...+..+++++..+.+|+++|++|++++++..+.++.+++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHH-HHHHHHH
Q 008552 431 FTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVG-AISSVFL 509 (561)
Q Consensus 431 ~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-v~~~~l~ 509 (561)
+++++.++++.++++++..+|+.|+++.+.+.+++++..++.++.++.....+++++.||+|.+++.+++.. ++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 6666665
Q ss_pred H
Q 008552 510 L 510 (561)
Q Consensus 510 ~ 510 (561)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.65 E-value=1.5e-13 Score=145.27 Aligned_cols=209 Identities=18% Similarity=0.226 Sum_probs=190.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 99 ~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
+..|++++...|.+++.....+..++|+.+.+++++...++++.+..+.++...++..+++++.-+..++...++|
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d---- 270 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD---- 270 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 4579999999999999999999999999999999999999999999999999988888888888899999888887
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC--CCCCccccHHHHHHHHHHHHhH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~yl~i~~~~~ 256 (561)
.++.++...+.+...+.+.++.++.+..+++|+.+++. +.-+.+-.+....++++.++++
T Consensus 271 ------------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l 332 (451)
T PF03023_consen 271 ------------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGL 332 (451)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999764 2323335677889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008552 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 331 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~ 331 (561)
|++.+...+...+.+++|+|.|++..+++.++|++++.++.. .+|..|.++++.++.++.++++++.++|+..
T Consensus 333 ~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 333 PFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999977775 6899999999999999999999998877664
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.64 E-value=9.4e-14 Score=149.26 Aligned_cols=203 Identities=16% Similarity=0.255 Sum_probs=172.9
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcch------hhhh----hhHHHHHHHHHHHhhhhhhhhhhHHH
Q 008552 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLE------LASA----GVSTSIFNILSKVFNIPLLSVATSFV 166 (561)
Q Consensus 98 ~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~------laa~----~~~~~i~~~~~~~~~~gl~~~~~~~v 166 (561)
++..|++++.++|..++++...+...+|+.++++ +++.. .+.+ +++.++.++.. ....++..+..+.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998 54322 1222 23344555554 44457888999999
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHH
Q 008552 167 AEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQ 246 (561)
Q Consensus 167 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 246 (561)
++..+++| .++.++...+.+.+..+++++.++.+..+++++..++..+++ +.
T Consensus 300 s~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~ 351 (488)
T TIGR02900 300 SEAMAKKN----------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AG 351 (488)
T ss_pred HHHHHcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hH
Confidence 99999887 888999999999999999999999999999999998875433 67
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 008552 247 RFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYL 326 (561)
Q Consensus 247 ~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~ 326 (561)
.++++.++..++..+.....+++++.||+|.+++..++..++|++++++++..+.+|+.|+++++.+++.+..++..+..
T Consensus 352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~ 431 (488)
T TIGR02900 352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEI 431 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988755678999999999999999999988877
Q ss_pred Hhc
Q 008552 327 NKR 329 (561)
Q Consensus 327 ~~~ 329 (561)
+|.
T Consensus 432 ~~~ 434 (488)
T TIGR02900 432 KKN 434 (488)
T ss_pred HHH
Confidence 654
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.61 E-value=3.9e-12 Score=132.90 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=188.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 99 ~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
+..|++.+...|+.++..++.+..++|+.+.+.+.+-..+.+..+..++++...+++.++++..-+..|+...++|
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~---- 304 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD---- 304 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC----
Confidence 5679999999999999999999999999999999998999999999999999999999888888999999877777
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCC--ccccHHHHHHHHHHHHhH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSA--SSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~a~~yl~i~~~~~ 256 (561)
.++.++...+++.+.+++.++.++.+.++++|+.+.+....+ ++-...+.+.++..++++
T Consensus 305 ------------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL 366 (518)
T COG0728 305 ------------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGL 366 (518)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhh
Confidence 788889999999999999999999999999999997633221 113556778899999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 008552 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSI 334 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~ 334 (561)
+++.+..++...+-+++|+|+|+++.+++.++|+.++.++.. .+|..|.++++.++.++++.++++.++|+....+
T Consensus 367 ~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~ 442 (518)
T COG0728 367 IPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP 442 (518)
T ss_pred HHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999966654 5778889999999999999999988887765333
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=1.5e-11 Score=119.81 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchh
Q 008552 120 MAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDR 198 (561)
Q Consensus 120 ~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (561)
..+++-..+++| +|++++|.++...++..++..+..+|+..... +. .+++ ++
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~----------------------~~ 54 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARD----------------------KQ 54 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccC----------------------HH
Confidence 356677888999 99999999999999999988776666544332 21 1111 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCchhH
Q 008552 199 KLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTP 278 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (561)
+.++..........+++++..++ ...+...++ +++ ...++....+..+...+....++.+++.+|.+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (251)
T PF13440_consen 55 DIRSLLRFSLLVSLLLAVILAIL----AILIAYFFG-DPE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAY 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhC-Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 44445555444444444333322 222333443 222 4456677778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccccCccccchhhHHHHHhhHHHHHHHHH
Q 008552 279 VFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLA 358 (561)
Q Consensus 279 ~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 358 (561)
........++...+..++.. .+.++.+..++..++..+..++.+...+++. ..++ +...++.++.+.|.....+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 198 (251)
T PF13440_consen 124 ALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKL-RLSF---KFSWRRLLKYGLPFSLSSLL 198 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCc---hhhHHHHHHHHHHHHHHHHH
Confidence 99999988887544444443 3458888999999998888877766443221 1222 22233479999999999999
Q ss_pred HHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhh
Q 008552 359 AVMTITLSTSIAAR-QGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASS 409 (561)
Q Consensus 359 ~~~~~~~~~~~i~~-~g~~~~aa~~i~~~i~~l~~-~~~~al~~a~~p~vs~~ 409 (561)
.+.....+..+++. +|+++++.|+.+.++...+. ++..++++...|.+++.
T Consensus 199 ~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 199 SWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999 79999999999999999888 99999999999999863
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.53 E-value=2e-11 Score=131.32 Aligned_cols=201 Identities=16% Similarity=0.079 Sum_probs=168.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 99 ~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
+..|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+..+.++...++...+.....+..++. ++|
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~--- 278 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD--- 278 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC---
Confidence 457999999999999999999999999999999 99999999999999888766555533445555666553 222
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
.++.++.+.+.+.+...+++++.+.+...++++..++.+++ ...+...++++++...
T Consensus 279 -------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~ 335 (492)
T PRK10459 279 -------------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGL 335 (492)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHH
Confidence 67778889999999999999999999999999988775543 4568899999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKR 329 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~ 329 (561)
+..+.......+++.||+|.+++.+++.++++++..+++.. .+|+.|+++++.+++.+..++..+++.||
T Consensus 336 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 336 LRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888876655553 57999999999999999888888877554
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.46 E-value=9.1e-12 Score=130.99 Aligned_cols=201 Identities=11% Similarity=0.009 Sum_probs=170.1
Q ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccC
Q 008552 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 175 (561)
Q Consensus 97 ~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~ 175 (561)
+++..|+++++++|..++++..++...+|+.++++ +|++++|.|+.+..+.+.+...+..+++.+..+.+++. ++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~- 285 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE- 285 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Confidence 34567999999999999999999999999999985 99999999999999988664466668999999999984 33
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHh
Q 008552 176 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 255 (561)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~ 255 (561)
.++.++.+.+.+.....++++.+++++++++++..++.+++ .+.+.+++++.+++
T Consensus 286 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~ 340 (416)
T PRK15099 286 ---------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVG 340 (416)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHH
Confidence 56677778888888888888888888899999999987764 34578899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008552 256 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (561)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~ 328 (561)
.++...+......+...++++......+...+++++++++++. .+|..|+++++.+++.+..++......+
T Consensus 341 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 341 DVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777766778888888888888888999999998885 5799999999999999999877765543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.38 E-value=1.4e-10 Score=124.32 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=166.2
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCC
Q 008552 98 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (561)
Q Consensus 98 ~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~ 176 (561)
++..|++++.++|...+.+...+.+.+|+.++++ +|++++|.|+.+..+......+ ...+....-|.+++...+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~-~~~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIV-ASALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHH-HHHHHHHHHHHHHHHHHcCc--
Confidence 5678999999999999999999999999999999 9999999999777777777744 44788899999999988877
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhH
Q 008552 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~ 256 (561)
.++.++...+.+.+...++++..+.+..+++|+...+.+++. ..+...+.+.++..
T Consensus 286 --------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~ 341 (480)
T COG2244 286 --------------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAG 341 (480)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHH
Confidence 788888999999999999999999999999999887766542 23888899999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHH
Q 008552 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGS 314 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~ 314 (561)
++..+.......+++.|+++..++...++.++|++++++++. .+|..|++.++ .+
T Consensus 342 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 342 LFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999999999999999999999999999985 57888998888 44
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=3.5e-07 Score=91.61 Aligned_cols=413 Identities=15% Similarity=0.106 Sum_probs=240.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008552 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 100 ~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
......+.+.-.+..+++..+.+++-..++-| ++++.+|..++-..+..-.. -+.++.--+...-+.
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTi------------LFlsREair~A~l~~ 73 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTI------------LFLSREAIRLAELRI 73 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHH------------HHhhHHHHHHHhccC
Confidence 44556677788889999999999999999988 99998887766544433222 112222111110000
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHH
Q 008552 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~ 258 (561)
+..+++...+. ....+++..++.+..+....+ .+.+....++....+....-+.+...++..
T Consensus 74 -----------gs~~~d~~te~----~n~~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~~~~S~vv 135 (530)
T KOG2864|consen 74 -----------GSEPADTWTEF----INLLWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFIIGLSIVV 135 (530)
T ss_pred -----------CCCCCccHHHH----HHhhhhhhhHHHHHHHHHHHH---HHHHhhccchhhcCchHhHHHHHHHHHHHH
Confidence 00000113333 333444444444443332222 111211121111122223333333344433
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHH-HhHHHHHHhhh-ccchhhHHHHHHHHHHHHHHHHHH-HHHhcc-c-c-
Q 008552 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA-VFMFPMLMYYF-KLGVTGAAISTVGSQYMVTLLMIW-YLNKRT-I-L- 332 (561)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~-i~l~~lli~~~-~~G~~gaa~a~~i~~~~~~~~~~~-~~~~~~-~-~- 332 (561)
-.+...+.-..|..-+.+.-.....+..++. ++.-..++.+. .+++..-|+|.......-.+.+.+ +++.++ . .
T Consensus 136 ELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~ 215 (530)
T KOG2864|consen 136 ELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPET 215 (530)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccc
Confidence 3333444444454445555555555555555 33323333333 233444444444433333332222 222222 0 0
Q ss_pred ---------cCcccc---chhh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---ChhHHHHHHHHHHHHHHHH-HhH
Q 008552 333 ---------SIPNMK---NLHF-GDYLRSGGYLLGRTLAAVMTITLSTSIAARQ---GALAMAAHQICLQVWLSVS-MLA 395 (561)
Q Consensus 333 ---------~~~~~~---~~~~-~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~---g~~~~aa~~i~~~i~~l~~-~~~ 395 (561)
++...+ ...+ ++..+.-.-.....+..++...-+..+++.. .-.+-|.|.+.++.-++.. ++.
T Consensus 216 ~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF 295 (530)
T KOG2864|consen 216 EPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIF 295 (530)
T ss_pred cchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHh
Confidence 011111 1112 3667777777778888888888777777644 4556778999999988887 677
Q ss_pred HHHHHHHHHHHhhhhhcCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 008552 396 DAQAASGQALIASSFAKGDYNTVKEITH---FALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQ 472 (561)
Q Consensus 396 ~al~~a~~p~vs~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~ 472 (561)
..+........++.+.+++.|+.|+... +.+++...+++.....-...++.+..++.++......+...++++++..
T Consensus 296 ~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI 375 (530)
T KOG2864|consen 296 RPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYI 375 (530)
T ss_pred ChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHH
Confidence 8899999999999998888777776554 4455555555544444445556777777554333333447899999999
Q ss_pred HHHHHHHHHHhHhhhcCChhHHHH---HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 473 PVTAVAYIFDGLHYGVSDFSYAAY---SMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLS 542 (561)
Q Consensus 473 ~~~~~~~~~~~~l~a~g~~~~~~~---~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 542 (561)
++.+++.+..+...+.++.+..-. ...+..+...++.+++..++|..|..+|..+-+.++........++
T Consensus 376 ~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 376 PFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876654 4444555666777888888999999999999999999888666543
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.10 E-value=2e-07 Score=99.75 Aligned_cols=296 Identities=11% Similarity=-0.009 Sum_probs=195.4
Q ss_pred HHHHHHHHhHHHHHHHH----HHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhh-hccch------hhHHHHHHHHH
Q 008552 247 RFLSLRAIGAPAVVLSL----AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FKLGV------TGAAISTVGSQ 315 (561)
Q Consensus 247 ~yl~i~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~-~~~G~------~gaa~a~~i~~ 315 (561)
..+.+...+...-.+.. ..+..+.-..|.+....+.....+++..+....... .+++. .-+.++..+++
T Consensus 133 ~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq 212 (549)
T PF04506_consen 133 PSVFLYGLSAFIELLSEPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQ 212 (549)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHH
Confidence 33344444444433333 445555555666666666666666665544433221 01111 11244555666
Q ss_pred HHHHHHHHHHHHh--ccc-----ccCccccc-----h-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--h-ChhHHH
Q 008552 316 YMVTLLMIWYLNK--RTI-----LSIPNMKN-----L-HFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR--Q-GALAMA 379 (561)
Q Consensus 316 ~~~~~~~~~~~~~--~~~-----~~~~~~~~-----~-~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~--~-g~~~~a 379 (561)
+...+..+..... ... ...++... . --++.++.....+..++...+...-|..+++. + ..++-+
T Consensus 213 ~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QG 292 (549)
T PF04506_consen 213 LAYSITLFFCYYWMYFFPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQG 292 (549)
T ss_pred HHHHHHHHhhHHhhccCcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhh
Confidence 5555433322211 111 11121111 1 12578889999999999999999999999888 4 688899
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhcCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 008552 380 AHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDY---------NTVKEITHFALKTGLFTGVTLAVILGASFNYLAT 449 (561)
Q Consensus 380 a~~i~~~i~~l~~-~~~~al~~a~~p~vs~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 449 (561)
.|++++|+-+++. ++...+..+.....++...+++. +++.+.....+++...+++.+..+-...++.+.+
T Consensus 293 vY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~ 372 (549)
T PF04506_consen 293 VYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLR 372 (549)
T ss_pred HHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH
Confidence 9999999999888 67788999999999998876543 3455666677777777777666666666777777
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHH---HHHHHHHHHHHhcc-ccchhHHHHHH
Q 008552 450 LFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMA---VGAISSVFLLYAPR-VFGLSAVWWGL 525 (561)
Q Consensus 450 lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~---~~v~~~~l~~~l~~-~~G~~G~~~a~ 525 (561)
++.++..........++.++...++.+++.+....+++..+.+....-+.. ..++.....+++.. .+|..|+.+|.
T Consensus 373 ~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN 452 (549)
T PF04506_consen 373 LLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILAN 452 (549)
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 765433333334688999999999999999999999999998766543322 23333344455555 58999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008552 526 TLFMSLRVAAGYFRLLS 542 (561)
Q Consensus 526 ~i~~~~~~~~~~~~~~~ 542 (561)
.+-+.++.+..+.+.++
T Consensus 453 ~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 453 CINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877754
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.99 E-value=2.3e-08 Score=105.35 Aligned_cols=200 Identities=12% Similarity=0.011 Sum_probs=178.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhcCChhHH
Q 008552 340 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDYNTV 418 (561)
Q Consensus 340 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~-~~~~al~~a~~p~vs~~~g~~~~~~~ 418 (561)
.+.|++.+++.|..+..+.......+.+.+++++|+.++++.++++...+... .+..++..+..|.++|++|+++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 45688999999999999999999999999999999999999999998877644 67789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHH
Q 008552 419 KEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM 498 (561)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 498 (561)
....+++........+|.+.+.. +.+++...+..|+++...+..+.++.....+.+.....+...+++.+++....++.
T Consensus 105 g~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999888888888876554 55999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHH
Q 008552 499 MAVGAISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRL 540 (561)
Q Consensus 499 ~~~~v~~~~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~ 540 (561)
.+..++.+.+.+.+. .++|..|+.++..+++.+.......+.
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi 227 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYA 227 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Confidence 988888877666554 578899999999999988777766555
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.54 E-value=0.00017 Score=69.87 Aligned_cols=262 Identities=12% Similarity=0.031 Sum_probs=157.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCc---chhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCC
Q 008552 100 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGP---LELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (561)
Q Consensus 100 ~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~---~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~ 176 (561)
...++.++-+|..+++++..+.--+-+.-++|-.+ +.+|+++++.++.-++..... .+-. ++-.+++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~-~~~~-----igl~~V~s~-- 80 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS-MFHH-----IGLVFVNSK-- 80 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh-hhHH-----HHHHHhcch--
Confidence 45889999999999999998888888888887333 238999999988776663222 2222 233333332
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhHHH-HHHcCCCCCccccHHHHHHHHHHHH
Q 008552 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMY-FGSGLF-LDIMGISSASSMRIPAQRFLSLRAI 254 (561)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~~a~~yl~i~~~ 254 (561)
+++ ++.+......+.+...+..++.+ .+...+ ..+++.+++ +.+.+...+.++.+
T Consensus 81 --------------------rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~L~l 137 (345)
T PF07260_consen 81 --------------------RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLYLTL 137 (345)
T ss_pred --------------------hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHHHHH
Confidence 111 11222222222222222222222 122233 346677776 89999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHH---HHHHHHHHHHHHHHHHH----HH
Q 008552 255 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAA---ISTVGSQYMVTLLMIWY----LN 327 (561)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa---~a~~i~~~~~~~~~~~~----~~ 327 (561)
--++.++....+|++-=.+++......++...+..+++..+++...--....+. ++...+..+-+.+.... ..
T Consensus 138 lPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~ 217 (345)
T PF07260_consen 138 LPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIH 217 (345)
T ss_pred HHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999866777766666666666666655556543111111111 22222222222111111 12
Q ss_pred hcccccC-c-cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-h-C----hhHHHHHHHHHHHHHHHH
Q 008552 328 KRTILSI-P-NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR-Q-G----ALAMAAHQICLQVWLSVS 392 (561)
Q Consensus 328 ~~~~~~~-~-~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~-~-g----~~~~aa~~i~~~i~~l~~ 392 (561)
.+..... . +.....+++++++.+|.+.......+.--+.+.++++ + | ++++|..++.+.+--+.+
T Consensus 218 ~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y 290 (345)
T PF07260_consen 218 DIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPY 290 (345)
T ss_pred hhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcc
Confidence 2111111 1 2233467899999999999999999999999999998 4 3 366777666665544444
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.36 E-value=4.6e-05 Score=67.37 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008552 249 LSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 328 (561)
Q Consensus 249 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~ 328 (561)
+++.+++.++..+....+..+++.||+|..++..+.+.++|++++++++ +++|..|+++++.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999996 47899999999999999999999888877
Q ss_pred ccc
Q 008552 329 RTI 331 (561)
Q Consensus 329 ~~~ 331 (561)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 653
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.34 E-value=7e-05 Score=80.42 Aligned_cols=215 Identities=12% Similarity=0.086 Sum_probs=173.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--c-CcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR--L-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 101 ~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~--l-g~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
.+++++++......++...+++.-|+.++.. + ..++.|.|+++..+-+++..++-.++--..-...++...+++..+
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4778899999999999999999999999998 4 556789999999999999887777777777778888876654322
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
. .+++..++..+.+...+.+...+|++..++....++.++.+++++.- ....+...+++.+..+|
T Consensus 332 ~-------------~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~ 396 (549)
T PF04506_consen 332 K-------------QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIP 396 (549)
T ss_pred h-------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHH
Confidence 1 12334677888899999999999999998888899999998866543 34456888999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHH---HHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPVFC---LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 331 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~ 331 (561)
+.+++.+..+++++.-..+..... ..+..++.+..+++++.. ++|..|..+|..+...+-.+..+.+++|..+
T Consensus 397 ~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 397 FLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998776554433 344556677788888876 8999999999999999999999888866543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.06 E-value=0.0013 Score=64.23 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhhhcCChhHHHHHHH
Q 008552 346 LRSGGYLLGRTLAAVMTITLSTSIAA-RQGALAMAAHQICLQVWLSVSML-ADAQAASGQALIASSFAKGDYNTVKEITH 423 (561)
Q Consensus 346 l~~~~p~~~~~~~~~~~~~~~~~~i~-~~g~~~~aa~~i~~~i~~l~~~~-~~al~~a~~p~vs~~~g~~~~~~~~~~~~ 423 (561)
.|.+...........+...+...++. .+|+++.+.++....+.++...+ ..|+.++..-.+++...+ .+..++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 34555666666666555555555555 45999999999999999888865 677888888777776433 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHHH
Q 008552 424 FALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGA 503 (561)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v 503 (561)
......++..+ +.+ +...+...+.. ++... ....+.....++..........+++.++.+..........+
T Consensus 80 ~~~~~~~~~~~-i~~----~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSL-IFL----LILLIASFFGN-PSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHH-HHH----HHHHHHHHcCC-chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222222 222 22222223333 33221 12222222225778888899999999999988887777666
Q ss_pred HHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008552 504 ISSVFLLYAP-RVFGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 504 ~~~~l~~~l~-~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
....+..... ...+..+..++..++..+..++.++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLR 189 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543333322 2334788888888888888777777664
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.04 E-value=3.1e-05 Score=68.46 Aligned_cols=80 Identities=5% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008552 465 LLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKN 544 (561)
Q Consensus 465 l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 544 (561)
+++++++.++.++......++++.||+|..++.+.+..+++..+++.+++++|..|+++++.+++.+...+..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999888886543
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0042 Score=63.09 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=157.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCC
Q 008552 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR---LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 177 (561)
Q Consensus 101 ~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~---lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~ 177 (561)
.+++.+...-.....+...+++--|..++.- ++-.+-|.|.+...+-+++..++--++--..-...+|...+++++|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3566677777788888999999999998883 4444556777776666666666555666666777888877765222
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHH
Q 008552 178 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 257 (561)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~ 257 (561)
.+++..+....+.+...+|++........+++++.+++++.- ....+...+++.+..+|
T Consensus 318 -------------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~ 376 (530)
T KOG2864|consen 318 -------------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIP 376 (530)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHH
Confidence 777788888999999999988888888888888998887754 34446688999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHH---HHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008552 258 AVVLSLAIQGIFRGFKDTRTPV---FCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (561)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~ 332 (561)
+.+++.+..+++.+....+..- +...+..+...+++++++.+ +|..|..+|..+...+--+..+.++++..+.
T Consensus 377 ~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 377 FLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred HHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998876654433 34455667777888999876 4569999999888888777777777654443
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.89 E-value=0.033 Score=55.29 Aligned_cols=370 Identities=11% Similarity=0.069 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhccCc-chhh-----hhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCCCCCCCC
Q 008552 116 AIEPMAQLMETAYIGRLGP-LELA-----SAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 189 (561)
Q Consensus 116 ~~~~~~~~i~~~~vg~lg~-~~la-----a~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~ 189 (561)
..-++...+...+++.+.. .++. -+-......-+++.++..|+....+..+|...=+++
T Consensus 32 ~gPwll~i~~i~~i~iis~~~~v~~~~~~~Flssv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~--------------- 96 (467)
T COG4267 32 VGPWLLSIVSIILIGIISSQIVVPRVLSPQFLSSVTYCFIFSQIITGGFQLIITRFISDCLFEKK--------------- 96 (467)
T ss_pred ecchHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------------
Confidence 3445555556666666322 1111 112222333344446666788888888988877766
Q ss_pred CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008552 190 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 269 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l 269 (561)
.+++...+.-.+.+....+.+++.+.+. .+++ ....|=...+............-.++
T Consensus 97 -------~~kIlpsy~Gvi~lv~~~a~~ig~~vf~----------~~~~-----~si~yk~l~~~~FV~m~~~Wi~~iFl 154 (467)
T COG4267 97 -------QRKILPSYIGVILLVTLVAGVIGLIVFF----------VNNQ-----YSIVYKILACALFVGMSLVWILMIFL 154 (467)
T ss_pred -------HHHHhHhHHHHHHHHHHHHHHHHHHhhh----------hcCc-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555544444444422111 1111 12233333444455566667778889
Q ss_pred hhcCCchhHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhccc-ccCccccchhhHHHHHh
Q 008552 270 RGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI-LSIPNMKNLHFGDYLRS 348 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~v~i~l~~lli~~~~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 348 (561)
.+.+|.+...+.-.++.++..++..++-. .+..|.-++..+|..+.......++.|..+ +.+..++ +-...+-
T Consensus 155 S~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~Fd---FL~~~~~ 228 (467)
T COG4267 155 SGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFD---FLLYRRK 228 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccee---hhhhhhc
Confidence 99999999999999999999888877764 588999999999998888777766655322 1111221 2122222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--ChhHH------HHHHHHHH---HHHHHHHh--HHHHHHHHHHHHhhhhh----
Q 008552 349 GGYLLGRTLAAVMTITLSTSIAARQ--GALAM------AAHQICLQ---VWLSVSML--ADAQAASGQALIASSFA---- 411 (561)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~i~~~--g~~~~------aa~~i~~~---i~~l~~~~--~~al~~a~~p~vs~~~g---- 411 (561)
-...++....-.+..++++.+.=.- |.+.. .-|-+..- +..++.+. ...+.+..++.--+.+.
T Consensus 229 y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~ 308 (467)
T COG4267 229 YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRG 308 (467)
T ss_pred chHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhC
Confidence 2223444445555556665543111 11111 11222211 12222222 12344444444332222
Q ss_pred cC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 008552 412 KG-------DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGL 484 (561)
Q Consensus 412 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~ 484 (561)
.+ +.++.....++.+.-.+-+-...++.++++++.+..+|.-|+.. .+...+-.++.-.......+-.+
T Consensus 309 g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i 384 (467)
T COG4267 309 GGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNI 384 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 22233444555555566666778889999999999988765433 35555555555555555556666
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHh---ccccchhHHHHHHHHHHHHH
Q 008552 485 HYGVSDFSYAAYSMMAVGAISSVFLLYA---PRVFGLSAVWWGLTLFMSLR 532 (561)
Q Consensus 485 l~a~g~~~~~~~~~~~~~v~~~~l~~~l---~~~~G~~G~~~a~~i~~~~~ 532 (561)
..-..+-+..+..+.+..+.+..+.++. .|.+--.|..+|..+.-.++
T Consensus 385 ~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 385 FLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVA 435 (467)
T ss_pred HHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHH
Confidence 6666666776666655555555555443 34444455555555544433
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.88 E-value=0.0053 Score=59.31 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=104.4
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008552 364 TLSTSIAARQGALAMAAHQICLQVWLSVSML-ADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGA 442 (561)
Q Consensus 364 ~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~-~~al~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (561)
.....++..+|+++.+.|+....+..+...+ ..++.+...- ..+++.++.++.........++..+...+
T Consensus 6 ~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (251)
T PF13440_consen 6 LFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI---- 76 (251)
T ss_pred HHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3344555566999999999999998888865 4445444433 23456666666666655444444433333
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCChhHHHHHHHHHHHHHHHHH-HHhccccchhHH
Q 008552 443 SFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFL-LYAPRVFGLSAV 521 (561)
Q Consensus 443 ~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v~~~~l~-~~l~~~~G~~G~ 521 (561)
+...+...+ .+++. ..++.++.+..++..........+++.+|.+.......+..+...... .......+..+.
T Consensus 77 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (251)
T PF13440_consen 77 LAILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSI 151 (251)
T ss_pred HHHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 233333334 33433 245666777778889999999999999999998887777665542222 111123378888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008552 522 WWGLTLFMSLRVAAGYFRL 540 (561)
Q Consensus 522 ~~a~~i~~~~~~~~~~~~~ 540 (561)
.++..++..+..+..+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888887777666544
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.43 E-value=0.07 Score=52.16 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=108.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC---hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCChh
Q 008552 340 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQG---ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYN 416 (561)
Q Consensus 340 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g---~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~g~~~~~ 416 (561)
.+++++.++-.|..++.....+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+.+....++.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 45788999999999999999999988888887642 3559999999999999998888888887776633 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHH-HHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhcCC
Q 008552 417 TVKEITHFALKTGLFTGVTLAVI-----LGASFNY-LATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSD 490 (561)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~-i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~ 490 (561)
+ +... ....+.++.++++ ..-++.. +-.++.-||++.+.+...+.++.+..+++++....+|++.=.++
T Consensus 83 r--r~~v---l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 R--RKAV---LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred h--HHHH---HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 2 2222 2222233322222 2223343 33466779999999999999999999999999999999985555
Q ss_pred hhHHHHHHHHH
Q 008552 491 FSYAAYSMMAV 501 (561)
Q Consensus 491 ~~~~~~~~~~~ 501 (561)
+......++..
T Consensus 158 s~iV~~aSI~~ 168 (345)
T PF07260_consen 158 SWIVGSASIAD 168 (345)
T ss_pred eeEeehHHHHH
Confidence 55544444443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=89.82 E-value=25 Score=35.74 Aligned_cols=131 Identities=6% Similarity=-0.015 Sum_probs=87.2
Q ss_pred HhHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 008552 393 MLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQ 472 (561)
Q Consensus 393 ~~~~al~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~ 472 (561)
.+..+++....-.+|+.+=++|.+++...+.-.+.+....+..++.+++ ...++.+. .+-.......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCchhH-----HHHHHHHHHH
Confidence 4456677777777888888888888887777666666555555553221 11222222 2222333445
Q ss_pred HHHHHHHHHHhHhhhcCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008552 473 PVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGY 537 (561)
Q Consensus 473 ~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~v~~~~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~ 537 (561)
+..+...+....+.+++|.|...++..++.++...+..+. .+.+++|.-++..++..+...+..
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~ 205 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLN 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHH
Confidence 5667788888899999999998888877777666655554 667999999999988766555443
No 47
>PTZ00370 STEVOR; Provisional
Probab=46.89 E-value=99 Score=30.19 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhcCCCchhchhcC
Q 008552 529 MSLRVAAGYFRLLSKNGPWWFLQKHM 554 (561)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~w~~~~~~~ 554 (561)
.++..+++.|.++||++.|+...+++
T Consensus 268 ~vvliilYiwlyrrRK~swkhe~kkh 293 (296)
T PTZ00370 268 AVVLIILYIWLYRRRKNSWKHECKKH 293 (296)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 34445556666777888998877654
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=46.06 E-value=1.1e+02 Score=23.84 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHH
Q 008552 398 QAASGQALIASSFAKGDYNTVKEITHFALKTGLFT 432 (561)
Q Consensus 398 l~~a~~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (561)
++......+-..+.+||++++++..+++-.++.+-
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia 70 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIA 70 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHH
Confidence 44445556677788999999999888877666443
No 49
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=39.00 E-value=5.8e+02 Score=28.26 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCChH
Q 008552 427 KTGLFTGVTLAVILGASFNYLATLFTSDTQ 456 (561)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~ 456 (561)
...++.+........+.+..+..+|++|+.
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~ 346 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVNVFGSDPI 346 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 334444444444445667777778887763
No 50
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=35.37 E-value=4.2e+02 Score=28.66 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHHHHHhHHHHH
Q 008552 274 DTRTPVFCLGLGNFSAVFMFPML 296 (561)
Q Consensus 274 ~~~~~~~~~~~~~~v~i~l~~ll 296 (561)
+++.|..+.....++.+++..+.
T Consensus 387 ~t~~P~nAv~l~~i~s~llgll~ 409 (550)
T KOG1289|consen 387 QTKVPLNAVLLSCIISILLGLLI 409 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Confidence 45888888888888777665443
No 51
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=33.85 E-value=5.1e+02 Score=26.16 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCchhHHH
Q 008552 201 LPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVF 280 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 280 (561)
.+...+.+..-..+++..++.+-..-+.+...++..+ ...........+..-+...+...-....-+..++.|.-..
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~---~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLE---FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccce---eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHH
Confidence 3345555554455555555444444444555665443 2223333333333333344555556778888888887776
Q ss_pred HHHHHHHHHHhHHHHHHhhh
Q 008552 281 CLGLGNFSAVFMFPMLMYYF 300 (561)
Q Consensus 281 ~~~~~~~v~i~l~~lli~~~ 300 (561)
....+.++.-.+-+.+...+
T Consensus 86 sL~~Nwii~P~lm~~la~~f 105 (342)
T COG0798 86 SLFVNWIIGPLLMFALAWFF 105 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555443
No 52
>PF13347 MFS_2: MFS/sugar transport protein
Probab=32.18 E-value=5.9e+02 Score=26.35 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=11.8
Q ss_pred HhHhhhcCChhHHHHHHHHHHH
Q 008552 482 DGLHYGVSDFSYAAYSMMAVGA 503 (561)
Q Consensus 482 ~~~l~a~g~~~~~~~~~~~~~v 503 (561)
..+.+=.|+.|......++..+
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAAL 302 (428)
T ss_pred HHHHHHccceeehhhhHHHHHH
Confidence 4455555777655555444433
No 53
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=29.90 E-value=3.5e+02 Score=27.73 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCCCCCCCCCC
Q 008552 108 SLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPN 186 (561)
Q Consensus 108 a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~~~~~~~~~ 186 (561)
+.-.+..++++.+.+.+-+.+.-| +|+.+ +++++....++..+|+. ++.+.+++-.
T Consensus 60 g~iLIGNNLvNilasalaT~~~irl~Gd~G---vaIAt~~mT~vilvFaE--------VlPKt~Aa~~------------ 116 (423)
T COG4536 60 GTILIGNNLVNILASALATILGIRLYGDAG---VAIATGVLTFVILVFAE--------VLPKTIAALY------------ 116 (423)
T ss_pred eeeeecccHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHH--------hcchHHhhhC------------
Confidence 444556666666666666665555 77755 44555555555433332 3455555554
Q ss_pred CCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCC
Q 008552 187 VSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSA 238 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (561)
.+++....+..+.....+.-++..++-.+..-+++++|.+.+
T Consensus 117 ----------perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 ----------PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred ----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 677666677777777777777777777788888999987654
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=28.68 E-value=6.7e+02 Score=25.88 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008552 197 DRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDI 232 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (561)
+++.+++.+.+...+.+...+..++.....-|+...
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778999999999999998888877777777663
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.16 E-value=97 Score=26.21 Aligned_cols=28 Identities=4% Similarity=-0.051 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008552 518 LSAVWWGLTLFMSLRVAAGYFRLLSKNG 545 (561)
Q Consensus 518 ~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 545 (561)
+.|+.+|.+.+.+...++.+|+++|+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555554444444444443333
No 56
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=26.92 E-value=3.6e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHH-HHHhHHHHHHHHHHHHHHHHH
Q 008552 100 VQLD-LIMLSLPAIAGQAIEPMAQLM 124 (561)
Q Consensus 100 ~~~~-i~~~a~p~~~~~~~~~~~~~i 124 (561)
..|+ .+..++|++++.....+...+
T Consensus 61 M~rRm~~~~GiP~~lG~~~f~~~y~l 86 (153)
T PF11947_consen 61 MLRRMAVFVGIPTALGVAVFVVFYYL 86 (153)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3444 555678988887776665444
No 57
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=26.57 E-value=7.3e+02 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 008552 414 DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLAT 449 (561)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 449 (561)
+.++.+++.+++.+.+.+......+++....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999998888888877766
No 58
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.28 E-value=8.3e+02 Score=24.40 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=33.3
Q ss_pred hhcCCchhHHHHHHHHHHHHHhHHHHHH--------hhhccchhhHHHHHHHHHHHHHHHHH
Q 008552 270 RGFKDTRTPVFCLGLGNFSAVFMFPMLM--------YYFKLGVTGAAISTVGSQYMVTLLMI 323 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~v~i~l~~lli--------~~~~~G~~gaa~a~~i~~~~~~~~~~ 323 (561)
+|.=+.+..+...+++++++....++=. ++.+.|...+++.+.+...+...+.+
T Consensus 245 ~GiLs~~eali~LliG~ils~~~~~lk~slP~~vsifG~k~Glk~~~vn~~v~i~~~i~~v~ 306 (311)
T COG3366 245 SGILSEKEALIALLLGGILSLPIIYLKHSLPTYVSIFGRKLGLKIVAVNTAVSILARILIVL 306 (311)
T ss_pred cCCCCHHHHHHHHHHHhHHHhhHHHHHhhcccceeeeccccchHHHHHHHHHHHHHHHHHHH
Confidence 4545677777788888888775443322 22357777777777766655544443
No 59
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=21.26 E-value=6.9e+02 Score=23.48 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=34.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhh
Q 008552 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGV 142 (561)
Q Consensus 99 ~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~-lg~~~laa~~~ 142 (561)
+..+.+.+...|.+.+.+...+.+++....+++ +|-++--..++
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl 112 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345677888999999999999999999999999 88665333333
No 60
>PRK10739 putative antibiotic transporter; Provisional
Probab=21.01 E-value=6.7e+02 Score=23.19 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=37.3
Q ss_pred HHHHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHH
Q 008552 403 QALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGL 465 (561)
Q Consensus 403 ~p~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l 465 (561)
.|.+-....+.+.++-|+..++....+ ..+.+++.++++.+.++|.-+-+..+.+...+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a----~~ill~f~~~G~~iL~~fGIsl~afrIAGGil 79 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIA----LLVMLVFLFAGEKILAFLNLRTETVSISGGII 79 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444455556666677777654444 34445777889999999987766665555443
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.27 E-value=1.5e+02 Score=25.04 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q 008552 306 GAAISTVGSQYMVTLLMIWYLNKRT 330 (561)
Q Consensus 306 gaa~a~~i~~~~~~~~~~~~~~~~~ 330 (561)
|..+|.+.|-+...++..+.++|++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443333333334444433
Done!