Query 008552
Match_columns 561
No_of_seqs 292 out of 1629
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 06:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 66.9 46 0.0034 30.2 17.6 26 301-326 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 63.1 54 0.004 29.7 34.6 28 513-540 404-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 24.6 2E+02 0.015 24.6 15.0 7 302-308 376-382 (417)
4 d1dsqa_ g.40.1.1 (A:) Nucleic 19.9 14 0.001 18.7 0.5 6 11-16 7-12 (26)
5 d1sfea1 a.4.2.1 (A:93-176) Ada 16.3 26 0.0019 24.6 1.4 16 16-32 1-16 (84)
6 d2fhzb1 d.243.1.2 (B:12-104) C 14.1 6.5 0.00047 27.5 -2.3 22 11-32 26-48 (93)
7 d1lghb_ f.3.1.1 (B:) Light-har 13.4 74 0.0054 18.9 2.7 35 191-225 5-39 (43)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 10.5 86 0.0063 16.7 2.1 14 510-523 17-30 (33)
9 d1pv7a_ f.38.1.2 (A:) Lactose 7.8 5.5E+02 0.04 21.3 32.1 27 514-540 374-400 (417)
10 d1vm6a3 c.2.1.3 (A:1-96,A:183- 7.5 93 0.0068 23.2 2.1 22 12-33 70-92 (128)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=66.89 E-value=46 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=12.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 008552 301 KLGVTGAAISTVGSQYMVTLLMIWYL 326 (561)
Q Consensus 301 ~~G~~gaa~a~~i~~~~~~~~~~~~~ 326 (561)
..|..+..+.......+..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655554444444444444444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.15 E-value=54 Score=29.69 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=15.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008552 513 PRVFGLSAVWWGLTLFMSLRVAAGYFRL 540 (561)
Q Consensus 513 ~~~~G~~G~~~a~~i~~~~~~~~~~~~~ 540 (561)
...+|..+..+......++..++.+...
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566776666665555555555554444
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=24.58 E-value=2e+02 Score=24.58 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=3.0
Q ss_pred cchhhHH
Q 008552 302 LGVTGAA 308 (561)
Q Consensus 302 ~G~~gaa 308 (561)
.|.....
T Consensus 376 ~g~~~~~ 382 (417)
T d1pv7a_ 376 IGFQGAY 382 (417)
T ss_dssp HCHHHHH
T ss_pred HCHHHHH
Confidence 4544433
No 4
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=19.90 E-value=14 Score=18.73 Aligned_cols=6 Identities=83% Similarity=1.514 Sum_probs=4.2
Q ss_pred cccccc
Q 008552 11 SCGITG 16 (561)
Q Consensus 11 ~~~~~~ 16 (561)
|||-||
T Consensus 7 scgktg 12 (26)
T d1dsqa_ 7 SCGKTG 12 (26)
T ss_dssp TTCCBS
T ss_pred ecCCcc
Confidence 677776
No 5
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=16.28 E-value=26 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.5
Q ss_pred chhHHHHHHhhhcccCc
Q 008552 16 GTSFQRRAINKMGKAFP 32 (561)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (561)
||.||+|-++.+.+ .|
T Consensus 1 GT~Fq~~V~~~l~~-Ip 16 (84)
T d1sfea1 1 GTAFQQQVWQALRT-IP 16 (84)
T ss_dssp SCHHHHHHHHHHTT-SC
T ss_pred CChHHHHHHHHHHc-CC
Confidence 89999999998864 66
No 6
>d2fhzb1 d.243.1.2 (B:12-104) Colicin E5 {Escherichia coli [TaxId: 562]}
Probab=14.07 E-value=6.5 Score=27.50 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=17.8
Q ss_pred cccccchhHHHHHHhhh-cccCc
Q 008552 11 SCGITGTSFQRRAINKM-GKAFP 32 (561)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~ 32 (561)
+-|.||||+-+|..||- ++.++
T Consensus 26 ~kg~tg~s~d~rs~~Kt~~d~lg 48 (93)
T d2fhzb1 26 SNGATGTSFDKRSPKKTPPDYLG 48 (93)
T ss_dssp HTCEEEEEEEEECGGGSTTTTCC
T ss_pred ccCCccccccccccccCCCCccc
Confidence 35899999999999987 65655
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=13.39 E-value=74 Score=18.90 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008552 191 GCDESTDRKLLPSVSTALVLALTIGILEALAMYFG 225 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (561)
|--++|-++..+.+.+++..-..++++.=++.+..
T Consensus 5 GLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 5 GLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777888888877777666655555443
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=10.54 E-value=86 Score=16.72 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=6.6
Q ss_pred HHhccccchhHHHH
Q 008552 510 LYAPRVFGLSAVWW 523 (561)
Q Consensus 510 ~~l~~~~G~~G~~~ 523 (561)
.++++++|+..+.+
T Consensus 17 ~ilvfw~gv~avf~ 30 (33)
T d1xmec1 17 TILVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33345555554443
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.83 E-value=5.5e+02 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=15.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH
Q 008552 514 RVFGLSAVWWGLTLFMSLRVAAGYFRL 540 (561)
Q Consensus 514 ~~~G~~G~~~a~~i~~~~~~~~~~~~~ 540 (561)
..+|....++...+...+..++..+.+
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456776666655555555555555444
No 10
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=7.47 E-value=93 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred ccccc-hhHHHHHHhhhcccCce
Q 008552 12 CGITG-TSFQRRAINKMGKAFPI 33 (561)
Q Consensus 12 ~~~~~-~~~~~~~~~~~~~~~~~ 33 (561)
+|-|| |.=|-+.+++.++..|+
T Consensus 70 iGTTG~~~~~~~~i~~~ak~~pv 92 (128)
T d1vm6a3 70 LGTTALKEEHLQMLRELSKEVPV 92 (128)
T ss_dssp ECCCSCCHHHHHHHHHHTTTSEE
T ss_pred EEcCCCCHHHHHHHHHHHhhCCE
Confidence 68999 88899999999999983
Done!