Query 008553
Match_columns 561
No_of_seqs 246 out of 942
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 8.4E-27 2.9E-31 204.9 12.4 85 477-561 23-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 3.8E-26 1.3E-30 195.1 10.0 82 480-561 8-89 (90)
3 2elj_A Transcriptional adapter 99.9 1.3E-25 4.4E-30 191.0 10.1 81 479-559 6-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.5 7E-15 2.4E-19 115.4 7.4 55 134-188 3-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.4 2.6E-13 8.8E-18 113.1 8.6 56 138-194 16-71 (79)
6 1x41_A Transcriptional adaptor 99.4 7.9E-13 2.7E-17 104.3 7.3 55 136-190 4-58 (60)
7 2e5r_A Dystrobrevin alpha; ZZ 99.4 5.3E-13 1.8E-17 106.5 5.4 56 76-132 5-61 (63)
8 2fc7_A ZZZ3 protein; structure 99.2 1.4E-11 4.7E-16 103.3 6.5 57 80-137 19-79 (82)
9 1guu_A C-MYB, MYB proto-oncoge 99.0 3.1E-10 1.1E-14 86.6 5.7 46 140-185 3-48 (52)
10 2dip_A Zinc finger SWIM domain 99.0 1.5E-10 5.1E-15 100.1 4.2 56 82-148 31-87 (98)
11 1gvd_A MYB proto-oncogene prot 99.0 3.5E-10 1.2E-14 86.3 5.6 46 140-185 3-48 (52)
12 1w0t_A Telomeric repeat bindin 99.0 7.6E-10 2.6E-14 84.9 6.1 46 140-185 2-49 (53)
13 2d9a_A B-MYB, MYB-related prot 99.0 1.1E-09 3.7E-14 86.1 6.9 48 138-185 6-53 (60)
14 2yum_A ZZZ3 protein, zinc fing 98.9 8.8E-10 3E-14 90.4 6.2 51 138-188 6-61 (75)
15 2dim_A Cell division cycle 5-l 98.9 2.9E-09 9.9E-14 86.2 7.0 48 138-185 7-54 (70)
16 2cu7_A KIAA1915 protein; nucle 98.9 3.4E-09 1.1E-13 86.4 7.1 48 138-186 7-54 (72)
17 3sjm_A Telomeric repeat-bindin 98.8 3.3E-09 1.1E-13 84.7 6.1 46 140-185 11-58 (64)
18 1tot_A CREB-binding protein; z 98.8 8.6E-10 2.9E-14 84.6 2.5 46 79-132 3-48 (52)
19 1ity_A TRF1; helix-turn-helix, 98.8 3.5E-09 1.2E-13 85.5 6.0 47 139-185 9-57 (69)
20 2cjj_A Radialis; plant develop 98.8 3.8E-09 1.3E-13 90.4 4.7 59 140-198 8-74 (93)
21 2cqr_A RSGI RUH-043, DNAJ homo 98.8 4.1E-09 1.4E-13 86.3 3.9 51 138-189 16-69 (73)
22 1wgx_A KIAA1903 protein; MYB D 98.7 8.9E-09 3E-13 84.1 5.3 46 140-185 8-56 (73)
23 2din_A Cell division cycle 5-l 98.7 4.1E-08 1.4E-12 78.5 6.8 47 137-185 6-52 (66)
24 2ltp_A Nuclear receptor corepr 98.0 4.3E-09 1.5E-13 89.4 0.0 50 135-185 11-60 (89)
25 2k9n_A MYB24; R2R3 domain, DNA 98.6 5.7E-08 1.9E-12 84.9 6.0 45 141-185 2-46 (107)
26 2ckx_A NGTRF1, telomere bindin 98.6 6E-08 2E-12 81.3 5.8 45 142-186 2-50 (83)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 5.9E-08 2E-12 84.3 5.6 47 139-185 3-49 (105)
28 2eqr_A N-COR1, N-COR, nuclear 98.5 1.8E-07 6.1E-12 73.8 5.9 44 140-184 12-55 (61)
29 3zqc_A MYB3; transcription-DNA 98.5 7.5E-08 2.6E-12 87.1 4.3 47 140-186 2-48 (131)
30 1h8a_C AMV V-MYB, MYB transfor 98.5 1.9E-07 6.5E-12 84.0 6.8 48 138-185 25-72 (128)
31 2llk_A Cyclin-D-binding MYB-li 98.4 2.5E-07 8.6E-12 75.7 6.2 47 136-184 19-65 (73)
32 2iw5_B Protein corest, REST co 98.4 4.7E-07 1.6E-11 88.3 7.1 50 136-186 129-178 (235)
33 3osg_A MYB21; transcription-DN 98.4 4.5E-07 1.5E-11 81.5 6.3 48 138-186 9-56 (126)
34 2k9n_A MYB24; R2R3 domain, DNA 98.3 6.6E-07 2.3E-11 78.1 6.8 47 138-185 51-97 (107)
35 1gv2_A C-MYB, MYB proto-oncoge 98.3 5.5E-07 1.9E-11 78.1 6.0 47 138-185 54-100 (105)
36 3osg_A MYB21; transcription-DN 98.3 7.8E-07 2.7E-11 79.9 5.9 47 138-185 60-106 (126)
37 2roh_A RTBP1, telomere binding 98.3 9.8E-07 3.4E-11 78.9 6.1 48 139-186 30-81 (122)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.8E-06 6.3E-11 70.4 6.7 56 140-196 8-70 (72)
39 2aje_A Telomere repeat-binding 98.2 8.5E-07 2.9E-11 77.4 4.9 49 139-187 12-64 (105)
40 3zqc_A MYB3; transcription-DNA 98.2 1.1E-06 3.7E-11 79.4 5.7 47 138-185 52-98 (131)
41 1h8a_C AMV V-MYB, MYB transfor 98.2 1.6E-06 5.6E-11 77.8 6.1 47 138-185 77-123 (128)
42 2juh_A Telomere binding protei 98.2 1.3E-06 4.4E-11 78.0 4.9 48 139-186 16-67 (121)
43 1h89_C C-MYB, MYB proto-oncoge 98.2 2.2E-06 7.5E-11 79.8 6.4 48 138-185 56-103 (159)
44 2yqk_A Arginine-glutamic acid 98.0 9E-06 3.1E-10 64.5 6.0 45 138-183 7-52 (63)
45 2xag_B REST corepressor 1; ami 97.9 8.8E-06 3E-10 87.8 6.5 48 138-186 378-425 (482)
46 1h89_C C-MYB, MYB proto-oncoge 97.9 1.2E-05 4E-10 74.8 5.9 47 138-185 108-154 (159)
47 4eef_G F-HB80.4, designed hema 97.8 4.4E-06 1.5E-10 67.9 0.9 44 140-183 20-66 (74)
48 2crg_A Metastasis associated p 97.8 3.1E-05 1.1E-09 62.7 5.4 44 140-184 8-52 (70)
49 4a69_C Nuclear receptor corepr 97.7 4.8E-05 1.6E-09 65.1 5.4 44 140-184 43-86 (94)
50 1x58_A Hypothetical protein 49 97.6 7.2E-05 2.5E-09 59.0 5.4 46 139-185 7-55 (62)
51 1ign_A Protein (RAP1); RAP1,ye 97.3 0.00014 4.8E-09 71.6 4.1 47 139-185 7-58 (246)
52 2fq3_A Transcription regulator 96.1 0.018 6E-07 50.0 7.8 69 492-560 22-98 (104)
53 3hm5_A DNA methyltransferase 1 95.8 0.011 3.9E-07 50.2 5.6 45 140-185 30-79 (93)
54 2xb0_X Chromo domain-containin 95.8 0.007 2.4E-07 61.0 4.6 32 137-168 165-196 (270)
55 1fex_A TRF2-interacting telome 95.5 0.01 3.6E-07 46.2 3.8 46 140-185 2-56 (59)
56 1ug2_A 2610100B20RIK gene prod 95.4 0.022 7.5E-07 47.9 5.6 45 141-185 34-80 (95)
57 4b4c_A Chromodomain-helicase-D 95.3 0.014 4.7E-07 56.2 4.8 31 139-169 133-163 (211)
58 1ofc_X ISWI protein; nuclear p 94.9 0.017 6E-07 59.0 4.4 57 141-199 111-167 (304)
59 2dce_A KIAA1915 protein; swirm 94.9 0.033 1.1E-06 48.9 5.5 70 491-560 23-101 (111)
60 2ebi_A DNA binding protein GT- 93.8 0.032 1.1E-06 46.2 2.8 45 141-185 5-62 (86)
61 1irz_A ARR10-B; helix-turn-hel 93.0 0.15 5.2E-06 40.3 5.4 48 140-187 7-58 (64)
62 4iej_A DNA methyltransferase 1 93.0 0.15 5E-06 43.3 5.6 45 140-185 30-79 (93)
63 2xag_B REST corepressor 1; ami 92.5 0.022 7.7E-07 61.5 0.0 45 139-184 188-232 (482)
64 2lr8_A CAsp8-associated protei 91.4 0.026 8.9E-07 45.0 0.0 44 141-185 15-60 (70)
65 1ofc_X ISWI protein; nuclear p 89.0 0.33 1.1E-05 49.6 4.7 47 139-185 211-272 (304)
66 1v5n_A PDI-like hypothetical p 88.8 0.22 7.4E-06 41.8 2.7 32 82-115 47-78 (89)
67 3ny3_A E3 ubiquitin-protein li 87.7 0.3 1E-05 39.8 2.7 42 87-133 6-51 (75)
68 2y9y_A Imitation switch protei 87.1 0.46 1.6E-05 49.8 4.4 60 141-202 124-184 (374)
69 4b4c_A Chromodomain-helicase-D 85.6 0.7 2.4E-05 44.1 4.6 42 141-182 8-53 (211)
70 3nis_A E3 ubiquitin-protein li 83.8 0.92 3.1E-05 37.5 3.9 42 87-133 10-55 (82)
71 2y9y_A Imitation switch protei 72.9 4 0.00014 42.7 5.6 46 140-185 228-288 (374)
72 2d8v_A Zinc finger FYVE domain 71.6 2.8 9.5E-05 33.2 3.0 33 81-117 7-39 (67)
73 1wg2_A Zinc finger (AN1-like) 68.4 11 0.00039 29.6 5.9 54 73-133 6-59 (64)
74 1weo_A Cellulose synthase, cat 64.8 2.5 8.6E-05 35.4 1.6 34 82-116 16-53 (93)
75 1z60_A TFIIH basal transcripti 61.7 3.6 0.00012 31.9 1.9 31 83-114 16-46 (59)
76 1wfp_A Zinc finger (AN1-like) 55.1 32 0.0011 27.8 6.4 49 78-133 21-69 (74)
77 1wfh_A Zinc finger (AN1-like) 52.2 23 0.00078 27.9 5.0 49 78-133 11-59 (64)
78 4fx0_A Probable transcriptiona 50.8 18 0.00062 31.9 5.0 57 503-559 26-82 (148)
79 2bv6_A MGRA, HTH-type transcri 49.1 24 0.00082 30.1 5.4 56 500-560 27-82 (142)
80 3kp7_A Transcriptional regulat 48.9 26 0.00089 30.3 5.7 56 499-560 27-82 (151)
81 2fa5_A Transcriptional regulat 46.4 41 0.0014 29.3 6.6 57 499-560 38-94 (162)
82 2htj_A P fimbrial regulatory p 45.6 19 0.00064 28.5 3.8 43 518-560 3-45 (81)
83 2d1h_A ST1889, 109AA long hypo 45.3 44 0.0015 26.7 6.2 58 499-560 10-67 (109)
84 3k0l_A Repressor protein; heli 44.0 46 0.0016 29.2 6.6 59 497-560 33-91 (162)
85 3g3z_A NMB1585, transcriptiona 43.9 33 0.0011 29.4 5.5 56 500-560 21-76 (145)
86 2cs3_A Protein C14ORF4, MY039 43.7 23 0.00078 29.2 3.9 37 79-115 12-48 (93)
87 2fbi_A Probable transcriptiona 42.3 34 0.0012 28.9 5.3 55 501-560 27-81 (142)
88 3ech_A MEXR, multidrug resista 41.7 48 0.0017 28.2 6.2 56 500-560 25-82 (142)
89 2frh_A SARA, staphylococcal ac 40.5 37 0.0013 28.9 5.2 58 500-560 27-84 (127)
90 1lj9_A Transcriptional regulat 40.2 32 0.0011 29.2 4.9 56 500-560 19-74 (144)
91 3bro_A Transcriptional regulat 39.7 53 0.0018 27.6 6.1 57 500-560 24-81 (141)
92 1sfx_A Conserved hypothetical 38.7 51 0.0018 26.3 5.6 55 501-560 11-65 (109)
93 3jw4_A Transcriptional regulat 38.5 46 0.0016 28.5 5.6 64 494-560 25-88 (148)
94 3bpv_A Transcriptional regulat 38.3 42 0.0014 28.2 5.2 55 501-560 20-74 (138)
95 4hbl_A Transcriptional regulat 38.2 42 0.0014 29.0 5.3 56 500-560 31-86 (149)
96 3boq_A Transcriptional regulat 38.0 45 0.0015 28.9 5.5 58 499-560 36-93 (160)
97 1bja_A Transcription regulator 37.7 37 0.0013 28.6 4.6 53 502-559 8-61 (95)
98 2ve8_A FTSK, DNA translocase F 37.5 47 0.0016 26.7 4.9 45 513-561 12-56 (73)
99 2fbh_A Transcriptional regulat 37.1 46 0.0016 28.1 5.3 57 500-560 27-83 (146)
100 3fm5_A Transcriptional regulat 36.8 47 0.0016 28.6 5.4 59 498-560 27-85 (150)
101 3bja_A Transcriptional regulat 36.7 44 0.0015 28.0 5.1 54 502-560 25-78 (139)
102 3bj6_A Transcriptional regulat 36.6 57 0.0019 27.9 5.9 56 500-560 30-85 (152)
103 3oop_A LIN2960 protein; protei 36.2 38 0.0013 28.9 4.6 53 503-560 30-82 (143)
104 1wfl_A Zinc finger protein 216 36.1 80 0.0028 25.4 6.0 47 80-133 23-69 (74)
105 2qww_A Transcriptional regulat 35.7 59 0.002 27.9 5.9 56 500-560 31-86 (154)
106 2dk5_A DNA-directed RNA polyme 35.7 49 0.0017 27.3 5.0 51 507-560 17-67 (91)
107 2k02_A Ferrous iron transport 35.6 42 0.0014 27.7 4.5 36 525-560 12-47 (87)
108 3s2w_A Transcriptional regulat 34.5 50 0.0017 28.8 5.2 58 498-560 38-95 (159)
109 1ign_A Protein (RAP1); RAP1,ye 34.3 54 0.0019 32.2 5.7 24 162-185 173-196 (246)
110 2gxg_A 146AA long hypothetical 34.2 60 0.0021 27.4 5.6 56 499-560 26-81 (146)
111 3hsr_A HTH-type transcriptiona 34.0 32 0.0011 29.4 3.7 56 500-560 26-81 (140)
112 2zc2_A DNAD-like replication p 33.9 16 0.00053 29.1 1.5 18 404-421 60-77 (78)
113 2x4h_A Hypothetical protein SS 33.9 63 0.0022 27.5 5.7 54 506-560 9-62 (139)
114 3e6m_A MARR family transcripti 33.3 48 0.0016 29.0 4.9 61 495-560 38-98 (161)
115 1twf_L ABC10-alpha, DNA-direct 33.1 11 0.00037 30.1 0.5 26 79-104 25-52 (70)
116 3e7l_A Transcriptional regulat 32.9 36 0.0012 25.7 3.4 26 146-172 19-44 (63)
117 1xn7_A Hypothetical protein YH 32.8 47 0.0016 26.7 4.2 35 525-559 12-46 (78)
118 2pex_A Transcriptional regulat 32.7 45 0.0015 28.7 4.6 56 500-560 37-92 (153)
119 3cjn_A Transcriptional regulat 32.7 59 0.002 28.2 5.4 56 500-560 42-97 (162)
120 3cdh_A Transcriptional regulat 32.6 68 0.0023 27.6 5.8 56 500-560 33-88 (155)
121 2rdp_A Putative transcriptiona 32.4 50 0.0017 28.2 4.8 56 500-560 32-87 (150)
122 2vn2_A DNAD, chromosome replic 30.9 82 0.0028 27.2 5.9 57 503-560 25-82 (128)
123 2xvc_A ESCRT-III, SSO0910; cel 30.8 55 0.0019 25.2 4.0 41 520-560 15-56 (59)
124 2a61_A Transcriptional regulat 30.8 54 0.0019 27.7 4.7 54 502-560 25-78 (145)
125 3nrv_A Putative transcriptiona 30.1 73 0.0025 27.1 5.5 52 504-560 34-85 (148)
126 1jgs_A Multiple antibiotic res 30.0 60 0.002 27.2 4.8 55 501-560 25-79 (138)
127 3u2r_A Regulatory protein MARR 29.4 71 0.0024 28.1 5.4 62 495-560 31-93 (168)
128 1tbx_A ORF F-93, hypothetical 29.0 67 0.0023 25.8 4.7 51 505-560 3-57 (99)
129 4b8x_A SCO5413, possible MARR- 28.6 45 0.0016 29.1 3.9 56 502-560 27-82 (147)
130 1s3j_A YUSO protein; structura 28.6 66 0.0023 27.6 4.9 56 500-560 27-82 (155)
131 1z91_A Organic hydroperoxide r 27.8 43 0.0015 28.5 3.5 55 501-560 31-85 (147)
132 3eco_A MEPR; mutlidrug efflux 27.3 87 0.003 26.3 5.4 57 500-560 21-78 (139)
133 1ku9_A Hypothetical protein MJ 27.3 1.1E+02 0.0036 25.8 6.0 57 500-560 16-72 (152)
134 2ffw_A Midline-1; B-BOX, ring 26.8 1.3E+02 0.0043 23.9 5.9 34 80-115 28-62 (78)
135 3bdd_A Regulatory protein MARR 26.6 1.1E+02 0.0037 25.6 5.9 52 504-560 25-76 (142)
136 3f3x_A Transcriptional regulat 26.5 1E+02 0.0035 26.0 5.8 54 501-560 27-81 (144)
137 3r0a_A Putative transcriptiona 26.3 1.2E+02 0.004 25.8 6.1 58 499-560 15-73 (123)
138 1wfk_A Zinc finger, FYVE domai 26.3 56 0.0019 26.8 3.7 34 81-115 8-42 (88)
139 2k6x_A Sigma-A, RNA polymerase 26.2 1.1E+02 0.0037 23.9 5.3 41 518-558 12-57 (72)
140 3dpt_A ROCO, RAB family protei 25.8 65 0.0022 32.9 4.9 54 506-559 11-68 (332)
141 2eth_A Transcriptional regulat 25.8 63 0.0022 27.9 4.3 53 503-560 37-89 (154)
142 2li6_A SWI/SNF chromatin-remod 25.3 64 0.0022 27.7 4.1 36 150-185 53-95 (116)
143 1vz0_A PARB, chromosome partit 25.2 1.7E+02 0.0058 28.0 7.6 59 500-558 138-201 (230)
144 1p4x_A Staphylococcal accessor 24.9 68 0.0023 31.2 4.7 57 500-560 24-81 (250)
145 2i5u_A DNAD domain protein; st 24.9 27 0.00093 28.2 1.5 18 404-421 65-82 (83)
146 2k4b_A Transcriptional regulat 24.6 49 0.0017 27.7 3.1 51 505-560 30-84 (99)
147 2jne_A Hypothetical protein YF 24.5 26 0.0009 29.8 1.4 32 83-115 33-70 (101)
148 4aik_A Transcriptional regulat 24.4 1.1E+02 0.0039 26.6 5.8 53 504-560 25-77 (151)
149 3zyq_A Hepatocyte growth facto 23.6 64 0.0022 30.9 4.2 33 83-116 165-198 (226)
150 3deu_A Transcriptional regulat 23.6 84 0.0029 27.8 4.7 58 499-560 42-99 (166)
151 2cr8_A MDM4 protein; ZF-ranbp 23.3 51 0.0018 24.7 2.5 31 96-126 10-47 (53)
152 2nnn_A Probable transcriptiona 22.6 98 0.0033 25.8 4.8 49 507-560 35-83 (140)
153 3tgn_A ADC operon repressor AD 22.4 1E+02 0.0034 26.0 4.9 49 506-560 34-82 (146)
154 1p6r_A Penicillinase repressor 22.0 1.1E+02 0.0037 23.8 4.6 49 507-560 6-58 (82)
155 2pjp_A Selenocysteine-specific 21.9 68 0.0023 27.4 3.6 52 508-559 59-110 (121)
156 2fu4_A Ferric uptake regulatio 21.5 1E+02 0.0035 23.9 4.4 33 528-560 32-69 (83)
157 2vrw_B P95VAV, VAV1, proto-onc 21.4 59 0.002 33.4 3.7 36 81-117 356-393 (406)
158 1sd4_A Penicillinase repressor 20.9 1E+02 0.0034 25.7 4.5 50 506-560 6-59 (126)
159 2fxa_A Protease production reg 20.7 69 0.0024 29.8 3.7 55 501-560 39-93 (207)
160 2nyx_A Probable transcriptiona 20.1 1.3E+02 0.0044 26.4 5.2 50 506-560 41-90 (168)
161 1r7j_A Conserved hypothetical 20.1 1E+02 0.0035 25.3 4.2 35 525-560 17-51 (95)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.94 E-value=8.4e-27 Score=204.89 Aligned_cols=85 Identities=29% Similarity=0.479 Sum_probs=81.7
Q ss_pred CCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHC
Q 008553 477 SSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKK 556 (561)
Q Consensus 477 ~~~~~~~ldi~~~pg~~LLS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~ 556 (561)
.++.+.+|||.++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+||++|+++|||||+++
T Consensus 23 ~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~ 102 (108)
T 2cuj_A 23 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE 102 (108)
T ss_dssp CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred CCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 008553 557 GLAPP 561 (561)
Q Consensus 557 Gwi~~ 561 (561)
|||++
T Consensus 103 GWi~~ 107 (108)
T 2cuj_A 103 GYITK 107 (108)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 99974
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.93 E-value=3.8e-26 Score=195.10 Aligned_cols=82 Identities=30% Similarity=0.496 Sum_probs=78.9
Q ss_pred CCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCC
Q 008553 480 HVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 559 (561)
Q Consensus 480 ~~~~ldi~~~pg~~LLS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 559 (561)
...+|||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+||++|+++|||||+++|||
T Consensus 8 ~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi 87 (90)
T 2aqe_A 8 SAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 87 (90)
T ss_dssp SSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTSS
T ss_pred CCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 34789999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC
Q 008553 560 PP 561 (561)
Q Consensus 560 ~~ 561 (561)
++
T Consensus 88 ~~ 89 (90)
T 2aqe_A 88 TK 89 (90)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-25 Score=191.01 Aligned_cols=81 Identities=31% Similarity=0.542 Sum_probs=77.1
Q ss_pred CCCCcc-cccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhcCCchhHHHHHHHHHHC
Q 008553 479 SHVNDL-YIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKK 556 (561)
Q Consensus 479 ~~~~~l-di~~~pg~~LLS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~g~lkk~dA~~l~kiD~~K~~rIydFlv~~ 556 (561)
+.+.|+ ||+++||++|||++|++||+++||+|.+||.+|++||+|+++ ||.++++||+.+++||++|+++|||||+++
T Consensus 6 ~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~ 85 (88)
T 2elj_A 6 SGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQ 85 (88)
T ss_dssp CSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHc
Confidence 345789 999999999999999999999999999999999999999997 566999999999999999999999999999
Q ss_pred CCC
Q 008553 557 GLA 559 (561)
Q Consensus 557 Gwi 559 (561)
|||
T Consensus 86 Gwi 88 (88)
T 2elj_A 86 NWM 88 (88)
T ss_dssp TCC
T ss_pred CCC
Confidence 997
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=7e-15 Score=115.44 Aligned_cols=55 Identities=44% Similarity=0.854 Sum_probs=52.6
Q ss_pred CCCCcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhC-CCCHHHHHHHHHhhccC
Q 008553 134 LSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN 188 (561)
Q Consensus 134 ~~~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yl~ 188 (561)
.++|++...||++|+.+|+++|+.||.+||..||.+|+ +||+.||+.||.++|++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999999999999999999999 89999999999999984
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=113.05 Aligned_cols=56 Identities=32% Similarity=0.817 Sum_probs=51.9
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCCC
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPL 194 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yl~~~~~pl 194 (561)
.....||++|+.+||+||++|| +||..||++||+||+.||+.||.++|+++++..-
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~ 71 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN 71 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence 3468999999999999999999 9999999999999999999999999999987653
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=7.9e-13 Score=104.32 Aligned_cols=55 Identities=36% Similarity=0.677 Sum_probs=51.2
Q ss_pred CCcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhccCCC
Q 008553 136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 190 (561)
Q Consensus 136 ~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yl~~~ 190 (561)
.++....||++||.+|+++|+.||.+||..||.+|++||+.||+.||.++++.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 4577889999999999999999999999999999999999999999999988764
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=106.46 Aligned_cols=56 Identities=27% Similarity=0.729 Sum_probs=50.0
Q ss_pred CCCCcCCccccccccc-cCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCccccc
Q 008553 76 GEGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 132 (561)
Q Consensus 76 ~~~~~~~~~Cd~C~~~-i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~ 132 (561)
+++-...+.||+|+.. |.+ .||+|.+|+|||||..||..|.+.+.|+++|+|+.+.
T Consensus 5 ~~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 5 SSGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred cCCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 3444466899999986 888 9999999999999999999999999999999999875
No 8
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.21 E-value=1.4e-11 Score=103.26 Aligned_cols=57 Identities=30% Similarity=0.624 Sum_probs=51.0
Q ss_pred cCCcccccccc-ccCCceeEEcCCCCC---cccchhhhhcccccCCCCCCCCcccccCCCCC
Q 008553 80 RALYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP 137 (561)
Q Consensus 80 ~~~~~Cd~C~~-~i~~~~ri~C~~C~d---fdLC~~CF~~G~e~~~Hk~~H~Y~vi~~~~~p 137 (561)
...+.||+|++ .|.+ .||+|.+|+| ||||..||..|.+...|+++|+|++|.....|
T Consensus 19 H~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp ESSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred eCcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 44789999997 6888 9999999999 99999999999999999999999999765544
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.01 E-value=3.1e-10 Score=86.56 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
...||.+|+.+|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988999999999999999999999865
No 10
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.01 E-value=1.5e-10 Score=100.07 Aligned_cols=56 Identities=29% Similarity=0.700 Sum_probs=48.1
Q ss_pred Ccccccccc-ccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccCCCCCcCCCCCCchhH
Q 008553 82 LYHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE 148 (561)
Q Consensus 82 ~~~Cd~C~~-~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~~~~p~~~~~Wta~Ee 148 (561)
.+.||+|+. .|.+ .||+|.+|+|||||..||..+. | ..|.|..|... ...|++.|+
T Consensus 31 gv~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~ 87 (98)
T 2dip_A 31 GIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK 87 (98)
T ss_dssp CCCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred CCCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence 489999997 6888 9999999999999999999984 8 79999988663 357988764
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.00 E-value=3.5e-10 Score=86.34 Aligned_cols=46 Identities=24% Similarity=0.563 Sum_probs=43.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
...||.+|+.+|++++..||.+||..||.+|++||+.||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5789999999999999999988999999999999999999999865
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.96 E-value=7.6e-10 Score=84.91 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=43.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 185 (561)
...||++|+.+|+++|+.||.+||..||.+++ +||+.+|+.+|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999875
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.1e-09 Score=86.08 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=44.8
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..||.++|..||.+|++||+.||+.||.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456789999999999999999988999999999999999999999865
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=8.8e-10 Score=90.43 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=46.7
Q ss_pred cCCCCCCchhHHHHHHHHHHcCC-----CChHHHHHHhCCCCHHHHHHHHHhhccC
Q 008553 138 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMN 188 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~-----gnW~~Ia~~vgtkt~~ec~~hy~~~yl~ 188 (561)
+....||.+|+.+|+++|..||. ++|..||.+|++||..||+.||.+++..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999996 7899999999999999999999887755
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.9e-09 Score=86.23 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=44.9
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+-...||.+|+.+|+++|..||.+||..||.+|++||+.||+.||.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999875
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=3.4e-09 Score=86.42 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=44.7
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (561)
+....||.+|+.+|+++++.|| .+|..||.+|++||..||+.||..++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999 59999999999999999999998765
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.85 E-value=3.3e-09 Score=84.73 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=43.0
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 185 (561)
...||.+|+.+|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999999977 89999999999865
No 18
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.84 E-value=8.6e-10 Score=84.55 Aligned_cols=46 Identities=37% Similarity=0.921 Sum_probs=39.7
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCccccc
Q 008553 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 132 (561)
Q Consensus 79 ~~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~ 132 (561)
+...+.||+|++++ + .||+|++|+|||||..||..+. | .|++..|.
T Consensus 3 ~~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 3 DRFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp CSSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred CcCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 34678999999996 5 8999999999999999999975 6 68888774
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.84 E-value=3.5e-09 Score=85.54 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=44.4
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 185 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 185 (561)
-...||.+|+.+|+++|+.||.++|..||.+++ +||..||+.+|.++
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999 99999999999876
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.78 E-value=3.8e-09 Score=90.45 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=49.6
Q ss_pred CCCCCchhHHHHHHHHHHcCC---CChHHHHHHhCCCCHHHHHHHHHhh-----ccCCCCCCCCCcc
Q 008553 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS 198 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~-----yl~~~~~plp~~~ 198 (561)
...||.+|+.+|++|+..||. ..|+.||.+|++||.+||+.||..+ .+++...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 468999999999999999984 4599999999999999999999986 6777778888764
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=4.1e-09 Score=86.34 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.0
Q ss_pred cCCCCCCchhHHHHHHHHHHcCC---CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 008553 138 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS 189 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~yl~~ 189 (561)
+....||.+|+.+|++|+.+||. .+|..||.+|++||..||+.||..+ +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45688999999999999999984 4799999999999999999999865 443
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=8.9e-09 Score=84.11 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=42.8
Q ss_pred CCCCCchhHHHHHHHHHHcCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
...||++|+.+|.+|+..|+. ++|+.||.+||+||++||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 5799999999999999999999876
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.1e-08 Score=78.50 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=42.0
Q ss_pred CcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 137 p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
.+....||.+|+.+|+++++.|| .+|..||..+| ||+.||+.||..+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhcccC-cCHHHHHHHHHHH
Confidence 35578999999999999999999 59999999555 9999999999865
No 24
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.05 E-value=4.3e-09 Score=89.40 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=45.7
Q ss_pred CCCcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 135 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 135 ~~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+.++....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4556788999999999999999999 5899999999999999999999854
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.57 E-value=5.7e-08 Score=84.91 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.8
Q ss_pred CCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
..||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 579999999999999999988999999999999999999999875
No 26
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.57 E-value=6e-08 Score=81.33 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHHHHHcCCCChHHHHHH----hCCCCHHHHHHHHHhhc
Q 008553 142 DWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY 186 (561)
Q Consensus 142 ~Wta~Eel~LLeaie~~G~gnW~~Ia~~----vgtkt~~ec~~hy~~~y 186 (561)
.||.+||..|++||++||.|+|..|+.. +.+||..+|+++|.++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999996 78899999999998864
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.56 E-value=5.9e-08 Score=84.25 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=44.2
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
....||.+|+.+|+++|+.||.+||..||.+|++||+.+|+.||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 35789999999999999999988999999999999999999999875
No 28
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=73.82 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (561)
...||++|..+|++++.+|| .+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999 899999999999999999999964
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.47 E-value=7.5e-08 Score=87.09 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (561)
.+.||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46799999999999999999999999999999999999999998753
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.47 E-value=1.9e-07 Score=83.99 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=44.8
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|+++|+.||.++|..||.+|++||..+|+.||.++
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 456889999999999999999988999999999999999999999864
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=75.67 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred CCcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008553 136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (561)
Q Consensus 136 ~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (561)
..+....||.+||.+|++++..|| .+|..||.++ +||..+|+.+|..
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 345678999999999999999999 5799999999 9999999999974
No 32
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.37 E-value=4.7e-07 Score=88.31 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=45.1
Q ss_pred CCcCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008553 136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (561)
Q Consensus 136 ~p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (561)
.+-....||.+|..++++|+..|| .||..||++|||||..||+.||.++-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344567999999999999999999 79999999999999999999998653
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.36 E-value=4.5e-07 Score=81.48 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=44.1
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (561)
.-...||.+|+.+|+++|+.||. ||..||.++++||+.||+.||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 34678999999999999999995 9999999999999999999998764
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.34 E-value=6.6e-07 Score=78.08 Aligned_cols=47 Identities=17% Similarity=0.488 Sum_probs=43.5
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999 6999999999999999999999754
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.33 E-value=5.5e-07 Score=78.10 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.4
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4467899999999999999999 7999999999999999999999754
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.28 E-value=7.8e-07 Score=79.91 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=43.4
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..|| .+|..||.++++||..+|+.||..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3467899999999999999999 8999999999999999999999754
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.26 E-value=9.8e-07 Score=78.94 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=44.2
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 186 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 186 (561)
-...||.+|+..|++||+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999986 6899999999999864
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24 E-value=1.8e-06 Score=70.35 Aligned_cols=56 Identities=16% Similarity=0.359 Sum_probs=45.3
Q ss_pred CCCCCchhHHHHHHHHHHcCC---CChHHHHHHhCCCCHHHHHHHHHhh----ccCCCCCCCCC
Q 008553 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV----YMNSPFFPLPD 196 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~----yl~~~~~plp~ 196 (561)
...||.+|+.+|..|+.+|+- +.|+.||.++ +||.+||+.||..+ .+.....|+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp~P~ 70 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVSGPS 70 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCSCSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCCCCC
Confidence 568999999999999999984 4599999999 59999999999875 22333455554
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.23 E-value=8.5e-07 Score=77.40 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHh----CCCCHHHHHHHHHhhcc
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYM 187 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~yl 187 (561)
-...||.+||..|++||+.||.|+|..|+... .+||..+|+++|.++.-
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999999999999976 67999999999998753
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.22 E-value=1.1e-06 Score=79.42 Aligned_cols=47 Identities=13% Similarity=0.398 Sum_probs=43.7
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+..+.||.+|+.+|++++..|| ++|..||.+|++||..+|+.||..+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3457899999999999999999 8999999999999999999999865
No 41
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.19 E-value=1.6e-06 Score=77.85 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=43.4
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999 7999999999999999999999754
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.17 E-value=1.3e-06 Score=78.04 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 186 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 186 (561)
-...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999996 6899999999998864
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.16 E-value=2.2e-06 Score=79.78 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=44.5
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..||.++|..||.++++||+.+|+.||.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 446789999999999999999977899999999999999999999865
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=9e-06 Score=64.49 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=41.4
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHH-hCCCCHHHHHHHHH
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYT 183 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~-vgtkt~~ec~~hy~ 183 (561)
+....||++|-.++++|+.+|| -||..|+.+ |++||..||..+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3467899999999999999999 699999996 99999999999986
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.93 E-value=8.8e-06 Score=87.79 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=44.1
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 186 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 186 (561)
-....||.+|-.++++||..|| .||..||++|||||..||+.||.++.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999 79999999999999999999998653
No 46
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.89 E-value=1.2e-05 Score=74.84 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.5
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 138 ~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
+....||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999754
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.79 E-value=4.4e-06 Score=67.86 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=39.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCC---ChHHHHHHhCCCCHHHHHHHHH
Q 008553 140 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT 183 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~g---nW~~Ia~~vgtkt~~ec~~hy~ 183 (561)
...||.+|..+|-.||.+|+-+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4679999999999999999864 6999999999999999999985
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.75 E-value=3.1e-05 Score=62.66 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 184 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~-vgtkt~~ec~~hy~~ 184 (561)
...||++|-.++.+|+..|| -||..|+.+ |++||..||..+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999 699999995 999999999999974
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.65 E-value=4.8e-05 Score=65.06 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (561)
...||++|..++.+++.+|| .||..||++|++||..||+.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999 899999999999999999999963
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.61 E-value=7.2e-05 Score=58.97 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.3
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHH---HhCCCCHHHHHHHHHhh
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV 185 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~---~vgtkt~~ec~~hy~~~ 185 (561)
....||.+|+..|++||++||- +|..|+. ++..||.-..+++|.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 4678999999999999999995 9999994 66789999999999865
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.28 E-value=0.00014 Score=71.61 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCC-----hHHHHHHhCCCCHHHHHHHHHhh
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gn-----W~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
....||.+|+..||+++.++|-.+ |..||.++.+||..+|+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999998432 99999999999999999999865
No 52
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=96.05 E-value=0.018 Score=50.00 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=60.4
Q ss_pred cCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhC--CCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 492 TQLLSEAEKRLCCEI------RLAPPLYLRMQEVMSREIFSG--NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 492 ~~LLS~~Ek~LC~~l------rL~P~~YL~iK~~LirE~~~~--g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+-.++-|++.+-.+ .=.|..||.+...||.-...+ -.|+.+++++.+.-|++-+.||+.||..-|+|+
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 466789999998875 346999999999999888733 479999999999999999999999999999995
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.85 E-value=0.011 Score=50.21 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=41.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHh-----CCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~v-----gtkt~~ec~~hy~~~ 185 (561)
..+||.+|+..|++.+++|| ..|.-|++.. +.||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 5899999999 479999999999764
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.77 E-value=0.007 Score=61.03 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=28.6
Q ss_pred CcCCCCCCchhHHHHHHHHHHcCCCChHHHHH
Q 008553 137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE 168 (561)
Q Consensus 137 p~~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~ 168 (561)
+-+.-.|+++|+..||-||..||+|+|+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 34567899999999999999999999999955
No 55
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.50 E-value=0.01 Score=46.20 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=40.1
Q ss_pred CCCCCchhHHHHHHHHHHc--------CCCChHHHHH-HhCCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~--------G~gnW~~Ia~-~vgtkt~~ec~~hy~~~ 185 (561)
+..||++|+..|++.|..| |-.-|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999 4334999999 79899999999999874
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.42 E-value=0.022 Score=47.94 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=41.1
Q ss_pred CCCCchhHHHHHHHHHHcCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 141 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
--||.+++..+|.++++-|. .-|.-||..+|.|+++|+.++|.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 36999999999999999984 3699999999999999999999875
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.31 E-value=0.014 Score=56.16 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.7
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHH
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH 169 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~ 169 (561)
+...||++|+..||-||..||+|+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3567999999999999999999999999663
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.95 E-value=0.017 Score=59.00 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=46.0
Q ss_pred CCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCCCCCccc
Q 008553 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH 199 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yl~~~~~plp~~~~ 199 (561)
.+||-.+-..++.|++.||-++|+.||..|++||++|++ +|.+.|...- -.+.+...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~ry-~ei~d~ek 167 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWERC-TELQDIER 167 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHHG-GGCTTHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHhH-HHhccHHH
Confidence 489999999999999999999999999999999999995 5556665532 23444433
No 59
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.033 Score=48.89 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=60.0
Q ss_pred ccCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHH--hCCCCCHHHhhhhhc--CCchhHHHHHHHHHHCCCCC
Q 008553 491 ETQLLSEAEKRLCCEI-----RLAPPLYLRMQEVMSREIF--SGNVNNKADAHHLFK--IEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 491 g~~LLS~~Ek~LC~~l-----rL~P~~YL~iK~~LirE~~--~~g~lkk~dA~~l~k--iD~~K~~rIydFlv~~Gwi~ 560 (561)
..+-.++-|++.+-.+ .=-|..||.+...||.-.. ..-.|+.++|++.++ -|++-+.||+.||-..|+|+
T Consensus 23 ~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 23 DRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp CSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred CcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 3567888898888776 4589999999999998877 345799999999885 79999999999999999995
No 60
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.75 E-value=0.032 Score=46.23 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=36.7
Q ss_pred CCCCchhHHHHHHHHHHcCC---------CChHHHHHHhC----CCCHHHHHHHHHhh
Q 008553 141 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV 185 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~---------gnW~~Ia~~vg----tkt~~ec~~hy~~~ 185 (561)
..||.+|.++||++...... .-|++||+.|. .+|+.||+..|.++
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57999999999998854221 15999999985 59999999999875
No 61
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.99 E-value=0.15 Score=40.32 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCCC--hHHHHHHhC--CCCHHHHHHHHHhhcc
Q 008553 140 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM 187 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gn--W~~Ia~~vg--tkt~~ec~~hy~~~yl 187 (561)
.-.||.+....+++||+++|.+. |..|-+.|+ +-|..++..|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999433 789999988 4799999999988754
No 62
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.99 E-value=0.15 Score=43.31 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCCChHHHHHHhC-----CCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-----tkt~~ec~~hy~~~ 185 (561)
..+||.+|+..|++.++.|+ ..|--|++... .||.++.+.||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999 58999999874 69999999999865
No 63
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.53 E-value=0.022 Score=61.49 Aligned_cols=45 Identities=16% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCChHHHHHHhCCCCHHHHHHHHHh
Q 008553 139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 184 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 184 (561)
+...||.+|..++.+++..|| .||..|+.+|++||..+|..+|+.
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhcc
Confidence 456899999999999999999 899999999999999999998865
No 64
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.43 E-value=0.026 Score=45.05 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=39.2
Q ss_pred CCCCchhHHHHHHHHHHcCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 141 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
--||.+|+..+|..+++-|. .-|..||..+ +||++|+..+|.++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 36999999999999999884 2699999999 79999999999875
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.03 E-value=0.33 Score=49.57 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCCCCchhHHHHHHHHHHcCC---CChHHHHH------------HhCCCCHHHHHHHHHhh
Q 008553 139 ICPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV 185 (561)
Q Consensus 139 ~~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~------------~vgtkt~~ec~~hy~~~ 185 (561)
-...||.+|+..||=++..||+ |+|+.|-. ++.+||+.|+..|-..+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 3578999999999999999999 99999973 55689999998887654
No 66
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=88.78 E-value=0.22 Score=41.81 Aligned_cols=32 Identities=34% Similarity=0.769 Sum_probs=28.1
Q ss_pred CccccccccccCCceeEEcCCCCCcccchhhhhc
Q 008553 82 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 115 (561)
Q Consensus 82 ~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~ 115 (561)
.+.|+.|++.+.+ .+|+|..| +|+|-+.|...
T Consensus 47 ~~~C~~C~~~~~~-~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTI-WSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCS-CEEECTTT-CCCCCHHHHHC
T ss_pred CeEeCCCCCcCCC-cEEEcCCC-CCeEcHHhcCC
Confidence 3789999999876 89999999 59999999864
No 67
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=87.65 E-value=0.3 Score=39.83 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=32.0
Q ss_pred ccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCcccccC
Q 008553 87 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 87 ~C~~~i~-~~~ri~C~~C~---dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.|++.+. +.+.|+|..|. ..-||..||..+. |. +|.|.+...
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~s 51 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTTS 51 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEEC
T ss_pred ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEEc
Confidence 4777764 66999999995 3569999999864 74 688988743
No 68
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=87.12 E-value=0.46 Score=49.78 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCChHHHHHHhC-CCCHHHHHHHHHhhccCCCCCCCCCcccccc
Q 008553 141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 202 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yl~~~~~plp~~~~~~~ 202 (561)
.+||-.+=..++.|++.||-++-..||..|+ +||++|++ .|.+.|...- -.+.+....|+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~ 184 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK 184 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence 5899999999999999999999999999998 89999999 7888887753 34566655544
No 69
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=85.62 E-value=0.7 Score=44.09 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCCCchhHHHHHHHHHHcC--CCChHHHHHHhC--CCCHHHHHHHH
Q 008553 141 PDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHY 182 (561)
Q Consensus 141 ~~Wta~Eel~LLeaie~~G--~gnW~~Ia~~vg--tkt~~ec~~hy 182 (561)
.+||..|-..|+.|+..|| .+.|++|+.... .||.++++..|
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 6899999999999999999 678999998754 79999998644
No 70
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=83.78 E-value=0.92 Score=37.54 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=32.0
Q ss_pred ccccccC-CceeEEcCCCC---CcccchhhhhcccccCCCCCCCCcccccC
Q 008553 87 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 87 ~C~~~i~-~~~ri~C~~C~---dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.|+..+. +.+.|+|..|. ..-||..||..+. |. +|.|.+...
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~s 55 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDIC 55 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEEC
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEEe
Confidence 5777764 56999999994 4569999999864 75 788987643
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=72.90 E-value=4 Score=42.73 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCCCchhHHHHHHHHHHcCC---CChHHHHHH------------hCCCCHHHHHHHHHhh
Q 008553 140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEH------------VGTKTKELCIEHYTNV 185 (561)
Q Consensus 140 ~~~Wta~Eel~LLeaie~~G~---gnW~~Ia~~------------vgtkt~~ec~~hy~~~ 185 (561)
...||.+|+.-||=++..||+ |+|+.|-.. +.+||+.|+..|...+
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 578999999999999999999 999999665 3589999987776553
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.58 E-value=2.8 Score=33.22 Aligned_cols=33 Identities=39% Similarity=0.839 Sum_probs=26.9
Q ss_pred CCccccccccccCCceeEEcCCCCCcccchhhhhccc
Q 008553 81 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 117 (561)
Q Consensus 81 ~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~ 117 (561)
...+|.+|..+-+ ++|..|.+--.|..||..+-
T Consensus 7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 4678999999854 79999986556999999863
No 73
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.35 E-value=11 Score=29.57 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=37.4
Q ss_pred CCCCCCCcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008553 73 QGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 73 ~~~~~~~~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.+.+..+.....|..|.+.+.- +-++| .|. ..+|.. .+++..|.-..+|+-...
T Consensus 6 ~~~~~~~~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HR~~e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 6 SGPSRPVRPNNRCFSCNKKVGV-MGFKC-KCG-STFCGS----HRYPEKHECSFDFKEVGS 59 (64)
T ss_dssp CCSSCCSCCSCSCTTTCCCCTT-SCEEC-TTS-CEECSS----SCSSTTTTCCCCCSCSCC
T ss_pred cCCCCCCCcCCcChhhCCcccc-cCeEe-ecC-CEeccc----CCCccccCCCcchhHHhH
Confidence 3444455667899999997654 57999 786 556654 566677877778876643
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.75 E-value=2.5 Score=35.45 Aligned_cols=34 Identities=26% Similarity=0.783 Sum_probs=28.1
Q ss_pred Ccccccccccc----CCceeEEcCCCCCcccchhhhhcc
Q 008553 82 LYHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSVG 116 (561)
Q Consensus 82 ~~~Cd~C~~~i----~~~~ri~C~~C~dfdLC~~CF~~G 116 (561)
...|.+|+.++ .+.+++-|.+|. |-+|-.||-.-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEYE 53 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEYE 53 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccC-ChhhHHHHHHH
Confidence 35799999774 456999999997 99999999763
No 75
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=61.65 E-value=3.6 Score=31.92 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=25.3
Q ss_pred ccccccccccCCceeEEcCCCCCcccchhhhh
Q 008553 83 YHCNYCNKDITGKIRIKCAVCPDFDLCIECFS 114 (561)
Q Consensus 83 ~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~ 114 (561)
..|.+|.+.+....+|+|..|. .++|.+|=.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~ 46 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV 46 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred CcccccCcccCCCccEECCccC-cCcccchhH
Confidence 3599999998765679999996 779999944
No 76
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.07 E-value=32 Score=27.81 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008553 78 GKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 78 ~~~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.+.....|..|.+.+.- +.++| .|. ..+|.. .+++..|.-..+|+-...
T Consensus 21 ~k~~~~RC~~C~kkvgL-~~f~C-rCg-~~FCs~----HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGV-TGFKC-RCG-STFCGT----HRYPESHECQFDFKGVAS 69 (74)
T ss_dssp TTCCCCBCSSSCCBCTT-TCEEC-TTS-CEECTT----TCSTTTSCCCSCTTSCCC
T ss_pred CcccCccchhhcCcccc-cceEe-ccC-CEeccc----cCCCcCCCCcCchhHHhH
Confidence 35567799999988764 57999 786 557765 455667888888876543
No 77
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.19 E-value=23 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=34.9
Q ss_pred CCcCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008553 78 GKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 78 ~~~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.+.....|..|.+.+.- +.++| .|. ..+|.. .+++..|.-..+|+-...
T Consensus 11 ~k~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGL-TGFMC-RCG-TTFCGS----HRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp CCSSCCCCTTTCCCCCT-TCEEC-SSS-CEECTT----TCSTTTTTCCCCCSCCCC
T ss_pred CCCcCCcChhhCCccCc-cCEEe-ecC-CEeccc----cCCcccCCCCchhhHHHH
Confidence 35566789999987664 57999 686 556754 566677887788876643
No 78
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=50.75 E-value=18 Score=31.89 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=41.6
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCC
Q 008553 503 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 559 (561)
Q Consensus 503 C~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 559 (561)
...++|.|.+|..+--+...+-..+|.++..+.-..+.++..-+.++.+=|+++|||
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 457899999998776665444445667888888888899999999999999999998
No 79
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=49.12 E-value=24 Score=30.05 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTILW-----DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHHH-----HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 455678899998887665432 45668888888888999999999999999999983
No 80
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=48.93 E-value=26 Score=30.31 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
-.+.+..++|.|..|..+..+ .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 27 LKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567789999999887655 34667777777788999999999999999999984
No 81
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.45 E-value=41 Score=29.27 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.|...++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITILA-----LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH-----HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4455577899999987765442 36778888888888999999999999999999984
No 82
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=45.64 E-value=19 Score=28.47 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 518 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 518 ~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..++.-...+|.++..+.-..+.+...-+++..+-|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444466788988888889999999999999999999984
No 83
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=45.28 E-value=44 Score=26.74 Aligned_cols=58 Identities=10% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+..+....+|.|..+..+..++ ..++.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~l~----~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 10 KDEIRCCYKITDTDVAVLLKMV----EIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 3455667889998877665544 136778888888889999999999999999999984
No 84
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=44.02 E-value=46 Score=29.17 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 497 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 497 ~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..=.+....++|.|..|..+.-+- ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 33 ~~~~~~l~~~glt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 33 KYLTEHLSALEISLPQFTALSVLA-----AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH-----HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 333445567899999998776443 45678888888888999999999999999999984
No 85
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=43.87 E-value=33 Score=29.37 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=45.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998776543 33457777777788999999999999999999983
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=43.75 E-value=23 Score=29.18 Aligned_cols=37 Identities=16% Similarity=0.581 Sum_probs=30.6
Q ss_pred CcCCccccccccccCCceeEEcCCCCCcccchhhhhc
Q 008553 79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 115 (561)
Q Consensus 79 ~~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~ 115 (561)
......|..|..-+.++-+++|..-+.-.+|-.|-..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 3577899999999998899999877777788888654
No 87
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.27 E-value=34 Score=28.85 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=44.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899999888776443 34557888888888999999999999999999983
No 88
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=41.71 E-value=48 Score=28.19 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.5
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCE--IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~--lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+.. ++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLID-----EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH-----HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 445666 899999998776443 45677888888888999999999999999999984
No 89
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=40.53 E-value=37 Score=28.90 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=46.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
......++|.|..|..+.-+.- ..++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYISE---NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHH---TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHh---ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4556788999999987765431 122677888888888999999999999999999994
No 90
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=40.25 E-value=32 Score=29.20 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 19 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 19 NIEFKELSLTRGQYLYLVRVC-----ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHTGGGTCTTTHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 345567889999987765442 45677888888889999999999999999999983
No 91
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.74 E-value=53 Score=27.63 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g-~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...+..++|.|..|..+.-+.- .+| .++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~~----~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLSR----NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH----TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHH----CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 4455678999998877654431 232 68888888888999999999999999999983
No 92
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=38.70 E-value=51 Score=26.26 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=43.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+....++|.|..+..+.-+ ..+|.++..+.-..+.++...+.++.+-|.+.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566888988877655433 234667888888888999999999999999999984
No 93
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=38.51 E-value=46 Score=28.54 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 494 LLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 494 LLS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+...=.+....++|.|..|..+.-+.- ..+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 25 KLKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3455555667789999999987765432 122677888888888999999999999999999985
No 94
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.26 E-value=42 Score=28.16 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRIH-----REPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHHH-----HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456788888887665432 45778888888888999999999999999999984
No 95
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=38.23 E-value=42 Score=28.99 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+....++|.|..|..+.-+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 31 EKKLKQFGITYSQYLVMLTLW-----EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 344567899999988776442 35777888877888999999999999999999984
No 96
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=37.98 E-value=45 Score=28.89 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
++.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 36 ~~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 36 NRQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3445558899999998775441 245678888888888999999999999999999983
No 97
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=37.67 E-value=37 Score=28.57 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhh-hhcCCchhHHHHHHHHHHCCCC
Q 008553 502 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHH-LFKIEPSKIDRVYDMLVKKGLA 559 (561)
Q Consensus 502 LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~-l~kiD~~K~~rIydFlv~~Gwi 559 (561)
=|+..+|.+..|-.+. -..+++..+.++-.. ...+|.+-+.+=...|++.||+
T Consensus 8 ~~~~~~L~~~QfsiL~-----~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATILI-----TIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHHH-----HHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHHH-----HHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 3778889988886543 334777888888888 7789999999999999999998
No 98
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=37.54 E-value=47 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCCC
Q 008553 513 YLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 561 (561)
Q Consensus 513 YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~~ 561 (561)
|-..++.++ ..+..+.+-...-|+|--|+..+|.|-|.+.|+|.|
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 445555554 335556666677799999999999999999999975
No 99
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.12 E-value=46 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. ..+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 27 DRRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344567889999987765442 256778888888888999999999999999999983
No 100
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.78 E-value=47 Score=28.57 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 498 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 498 ~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.=.+.+..++|.|..|..+.-+. ..++.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 27 AVNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 33455567899999988776332 244457777777788899999999999999999984
No 101
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.67 E-value=44 Score=27.98 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 502 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 502 LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+...+|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 25 AIEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HTGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 345678888888766543 246678888888889999999999999999999983
No 102
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.58 E-value=57 Score=27.90 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGLS-----LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 345567899998887765442 45677888888888999999999999999999983
No 103
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=36.17 E-value=38 Score=28.88 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 503 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 503 C~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 30 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 30 IASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp TTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 345688888887775443 23667777777788999999999999999999983
No 104
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.08 E-value=80 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=33.5
Q ss_pred cCCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccC
Q 008553 80 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 133 (561)
Q Consensus 80 ~~~~~Cd~C~~~i~~~~ri~C~~C~dfdLC~~CF~~G~e~~~Hk~~H~Y~vi~~ 133 (561)
.....|..|.+.+.- .-++|. |. ..+|.. .+++..|.-..+|+-...
T Consensus 23 ~~~nRC~~CrKkvgL-~gf~Cr-Cg-~~FCs~----HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGL-TGFDCR-CG-NLFCGL----HRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp SCTTBCSSSCCBCGG-GCEECT-TS-CEECSS----SCSTTTTTCCCCGGGTSS
T ss_pred CcCCcChhhCCcccc-cCeecC-CC-CEechh----cCCCccCCCcchhhhhch
Confidence 345689999987553 458999 86 446654 566777888888886643
No 105
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.73 E-value=59 Score=27.93 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVIY-----STPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345667899998887765432 34668888888888999999999999999999984
No 106
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.68 E-value=49 Score=27.29 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 507 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 507 rL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+|.|.+++.++.+- +.-+.|+ .-.+...-+.++...+.+|.+-|.++|||.
T Consensus 17 ~Lt~~q~~Vl~~I~--~~g~~gi-~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQEKLVYQIIE--DAGNKGI-WSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSHHHHHHHHH--HHCTTCE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH--HcCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45677777776543 2223354 445556667899999999999999999984
No 107
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.62 E-value=42 Score=27.70 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=33.2
Q ss_pred HhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 525 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 525 ~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...|.++.++.-..|.+...-+++..+.|.++|+|.
T Consensus 12 ~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 12 ALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 378999999999999999999999999999999873
No 108
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=34.53 E-value=50 Score=28.76 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 498 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 498 ~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.=.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 38 ~~~~~l~~~~lt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 38 YIGKKIEPYGIGSGQFPFLMRLY-----REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHGGGTCCTTTHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33455667899999997776442 34667777777788999999999999999999983
No 109
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=34.27 E-value=54 Score=32.23 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=22.3
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 162 NWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 162 nW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
-|..||++..++|....+++|.++
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999999865
No 110
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.21 E-value=60 Score=27.45 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
-...+...+|.|..|..+..+ . +|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345667788988888766543 2 6678888888888999999999999999999984
No 111
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=34.04 E-value=32 Score=29.45 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=44.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...+..++|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 26 ~~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 26 TNYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 34456788999888766433 246778888888888999999999999999999983
No 112
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=33.91 E-value=16 Score=29.07 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCchHHHH
Q 008553 404 QDLKEARAAGCRTSAEAD 421 (561)
Q Consensus 404 ~eLqeyR~~Gi~tl~e~~ 421 (561)
.-|..|++.||+|+++++
T Consensus 60 ~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 60 AILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 347899999999999873
No 113
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.91 E-value=63 Score=27.48 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 506 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 506 lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
++|.+..|-.++. |..-...++.++.++.-..+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~-l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLT-IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHH-HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHH-HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 4677777766663 22222256778888888888999999999999999999983
No 114
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=33.32 E-value=48 Score=28.99 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 495 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 495 LS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+...-.+.+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34444556678999999998776543 23567777777788999999999999999999983
No 115
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.11 E-value=11 Score=30.12 Aligned_cols=26 Identities=19% Similarity=0.592 Sum_probs=16.7
Q ss_pred CcCCccccccccc--cCCceeEEcCCCC
Q 008553 79 KRALYHCNYCNKD--ITGKIRIKCAVCP 104 (561)
Q Consensus 79 ~~~~~~Cd~C~~~--i~~~~ri~C~~C~ 104 (561)
....|.|..|+.. +....-++|..|.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCC
Confidence 4688999999987 4322334555553
No 116
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.91 E-value=36 Score=25.74 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHcCCCChHHHHHHhCC
Q 008553 146 DDEILLLEGIEMYGLGNWAEIAEHVGT 172 (561)
Q Consensus 146 ~Eel~LLeaie~~G~gnW~~Ia~~vgt 172 (561)
-|...+..+++.+| ||+..+|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 46667888999999 999999999984
No 117
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=32.77 E-value=47 Score=26.71 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=32.7
Q ss_pred HhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCC
Q 008553 525 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 559 (561)
Q Consensus 525 ~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 559 (561)
...|..+.++.-..|.+...-+++..+.|.++|.|
T Consensus 12 ~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 12 ALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 37899999999999999999999999999999987
No 118
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.75 E-value=45 Score=28.73 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 37 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 37 RGLLKALDLTYPQYLVMLVLW-----ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHTTTTTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 445567889998887665332 35667888877888999999999999999999983
No 119
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.66 E-value=59 Score=28.23 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAILS-----AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 334567899998887775432 45678888888889999999999999999999983
No 120
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=32.63 E-value=68 Score=27.60 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.....+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999888765432 356778888888889999999999999999999983
No 121
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.36 E-value=50 Score=28.18 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=44.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 344567789888887765432 34567888888888999999999999999999983
No 122
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.88 E-value=82 Score=27.17 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=40.1
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 503 CCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 503 C~~lrL~P~~YL~iK~~LirE~~~~-g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...++|.+..|+.+=.++- -.-.+ ..++.++.-..+.+++..+.++.+.|+++|||.
T Consensus 25 y~~lgLt~~e~~vll~L~~-~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQS-FFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHHH-HHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3466778887775443332 12222 236777777778999999999999999999983
No 123
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.80 E-value=55 Score=25.20 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=34.7
Q ss_pred HHHHHH-hCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 520 MSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 520 LirE~~-~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
|+.++. +||++..+.+-.-+.++...+-.+..=|.++|.|.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 344444 78999999999999999999999999999999874
No 124
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.79 E-value=54 Score=27.70 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 502 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 502 LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 3456788888887775433 24567888888888999999999999999999984
No 125
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=30.08 E-value=73 Score=27.08 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=41.2
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 504 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 504 ~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 34 ~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 34 QKFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3467888888665543 255678888888888999999999999999999984
No 126
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=30.04 E-value=60 Score=27.24 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSIR-----CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHHH-----HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34556788888887665442 33556777777788999999999999999999983
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.38 E-value=71 Score=28.09 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 495 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 495 LS~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+...=.+.+..++|.|..|..+.-+.- . ++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRS----VHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH----HTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 334445556888999999987753321 2 3577778888888999999999999999999984
No 128
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=28.99 E-value=67 Score=25.77 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=37.8
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHh----hhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 505 EIRLAPPLYLRMQEVMSREIFSGNVNNKADA----HHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 505 ~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA----~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.++|.|..|..+..+ ..+|.++..+. -..+.++..-+.++.+-|+++|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777655433 34566777665 5667899999999999999999984
No 129
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=28.58 E-value=45 Score=29.07 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=43.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 502 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 502 LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
....++|.+..|-.+.-+.. ..+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~~---~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLTF---SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHHT---SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHHH---CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 34678999999876643321 245677878878888999999999999999999984
No 130
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=28.56 E-value=66 Score=27.57 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
...+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASLK-----KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445566899999887775432 34567788888888999999999999999999983
No 131
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.80 E-value=43 Score=28.51 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=43.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567788888887665433 34567777777888999999999999999999983
No 132
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.30 E-value=87 Score=26.26 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=44.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~-g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.......+|.|..|..+..+.- .+ +.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 21 ~~~~~~~~lt~~~~~vL~~l~~----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 21 DQKLEQFDITNEQGHTLGYLYA----HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHGGGTCCHHHHHHHHHHHH----STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445678899988877765431 22 477888888888999999999999999999983
No 133
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=27.25 E-value=1.1e+02 Score=25.76 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+....++|.|..+-.+.-+.+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~~----~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILYL----SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH----CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4566778999888766554422 34668888888888999999999999999999984
No 134
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=26.84 E-value=1.3e+02 Score=23.90 Aligned_cols=34 Identities=24% Similarity=0.710 Sum_probs=24.5
Q ss_pred cCCcccccccccc-CCceeEEcCCCCCcccchhhhhc
Q 008553 80 RALYHCNYCNKDI-TGKIRIKCAVCPDFDLCIECFSV 115 (561)
Q Consensus 80 ~~~~~Cd~C~~~i-~~~~ri~C~~C~dfdLC~~CF~~ 115 (561)
...+.|++|...= .. .--.|.+|. ..+|..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~-A~ksCl~C~-~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQD-AVKTCVTCE-VSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCB-CCEEETTTT-EEECHHHHHH
T ss_pred CCCccCCcCCCCCCCC-CeeEccCcc-chhhhhhhHh
Confidence 3467899997432 22 455899997 5599999985
No 135
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.56 E-value=1.1e+02 Score=25.57 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 504 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 504 ~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 25 KQLGISLTRYSILQTLL-----KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33588888887665432 34567888888888999999999999999999983
No 136
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=26.55 E-value=1e+02 Score=26.04 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEI-RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~l-rL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+... +|.|..|..+..+. .+|. +.++.-..+.++..-+.++.+-|+++|||.
T Consensus 27 ~~l~~~~~lt~~~~~iL~~l~-----~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 27 NRLGKLMNLSYLDFSILKATS-----EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH-----HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344555 99999987765442 3444 778888888999999999999999999983
No 137
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=26.28 E-value=1.2e+02 Score=25.80 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCC-CCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNV-NNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~-lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
|..|-..++|.|..+-.+..+. ..+|. ++..+.-..+.++..-+.+..+-|.+.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L~----~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSFL----NEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556667899988765554332 13444 8888888888999999999999999999983
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.27 E-value=56 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=24.7
Q ss_pred CCccccccccccC-CceeEEcCCCCCcccchhhhhc
Q 008553 81 ALYHCNYCNKDIT-GKIRIKCAVCPDFDLCIECFSV 115 (561)
Q Consensus 81 ~~~~Cd~C~~~i~-~~~ri~C~~C~dfdLC~~CF~~ 115 (561)
....|..|++..+ -..+++|-.|. ..+|..|-..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCC-CEEChhHcCC
Confidence 3447999998743 12789999997 5588888654
No 139
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=26.15 E-value=1.1e+02 Score=23.90 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCHHHhhhhhc-----CCchhHHHHHHHHHHCCC
Q 008553 518 EVMSREIFSGNVNNKADAHHLFK-----IEPSKIDRVYDMLVKKGL 558 (561)
Q Consensus 518 ~~LirE~~~~g~lkk~dA~~l~k-----iD~~K~~rIydFlv~~Gw 558 (561)
..||....+.|.++-.+....++ +++..+..||++|-+.|+
T Consensus 12 k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 12 KKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 34565555678899877776664 788999999999999995
No 140
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=25.81 E-value=65 Score=32.90 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=40.4
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc---CCc-hhHHHHHHHHHHCCCC
Q 008553 506 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK---IEP-SKIDRVYDMLVKKGLA 559 (561)
Q Consensus 506 lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~k---iD~-~K~~rIydFlv~~Gwi 559 (561)
=+..|..|+.+++.|..+......++.++...+++ |.. ..+..+..||-..|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999999877777899998887764 554 3588999999999987
No 141
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.79 E-value=63 Score=27.90 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 503 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 503 C~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+...+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345678888877665432 34567888888888999999999999999999983
No 142
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.28 E-value=64 Score=27.71 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=26.8
Q ss_pred HHHHHHHHcC-------CCChHHHHHHhCCCCHHHHHHHHHhh
Q 008553 150 LLLEGIEMYG-------LGNWAEIAEHVGTKTKELCIEHYTNV 185 (561)
Q Consensus 150 ~LLeaie~~G-------~gnW~~Ia~~vgtkt~~ec~~hy~~~ 185 (561)
.|..+|...| -..|.+||..+|-......+.||.++
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~ 95 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRI 95 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHH
Confidence 4555666665 13799999999976677888888875
No 143
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=25.16 E-value=1.7e+02 Score=27.99 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEV-----MSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 558 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~-----LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gw 558 (561)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.|.+++......+++-++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 45677777776543222221 145666789999999999999998887789999999887
No 144
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.90 E-value=68 Score=31.21 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 500 KRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 500 k~LC~~lrL~P~~YL~iK~~LirE~~~-~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.+...++|.|.+|+.+.-+- .. .+.++.++.-..+.+|...+.++.+=|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~----~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLF----HQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHH----SCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 445567889999998876443 13 2467777777778999999999999999999984
No 145
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=24.88 E-value=27 Score=28.20 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCchHHHH
Q 008553 404 QDLKEARAAGCRTSAEAD 421 (561)
Q Consensus 404 ~eLqeyR~~Gi~tl~e~~ 421 (561)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 358899999999999874
No 146
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.55 E-value=49 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----CCchhHHHHHHHHHHCCCCC
Q 008553 505 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 505 ~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 560 (561)
..+|.|..+..|+-+. ..|.++..+....+. +..+-+.++.|-|+++|||.
T Consensus 30 ~~~LT~~e~~VL~~L~-----~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIW-----SLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp -CCCCCSCSHHHHHHH-----HHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 3578888888876443 234566666555554 45788999999999999984
No 147
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.54 E-value=26 Score=29.75 Aligned_cols=32 Identities=25% Similarity=0.808 Sum_probs=20.5
Q ss_pred cccccccccc--CCceeEEcCCCCC-cc---cchhhhhc
Q 008553 83 YHCNYCNKDI--TGKIRIKCAVCPD-FD---LCIECFSV 115 (561)
Q Consensus 83 ~~Cd~C~~~i--~~~~ri~C~~C~d-fd---LC~~CF~~ 115 (561)
..|-.|+..+ .+ .+++|..|.. |. +|++|-..
T Consensus 33 ~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-GHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CBCSSSCSBEEEET-TEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccCccCCCcceecC-CEEECccccchhhccccCcchhhH
Confidence 4688888775 34 4667888863 32 57777543
No 148
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=24.41 E-value=1.1e+02 Score=26.60 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 504 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 504 ~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..++|.|..|..+-.+- ..++..+.++.-..+.++..-+.++.+=|+++|||.
T Consensus 25 ~~~gLt~~q~~vL~~L~----~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN----RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHHH----HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH----HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 45789999987653321 235556656666677899999999999999999983
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.64 E-value=64 Score=30.93 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=25.3
Q ss_pred ccccccccccCC-ceeEEcCCCCCcccchhhhhcc
Q 008553 83 YHCNYCNKDITG-KIRIKCAVCPDFDLCIECFSVG 116 (561)
Q Consensus 83 ~~Cd~C~~~i~~-~~ri~C~~C~dfdLC~~CF~~G 116 (561)
-.|..|++..+- ..++||..|. ..+|..|-...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCc-CEeChhhcCCc
Confidence 479999987542 2679999996 66899997654
No 150
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.61 E-value=84 Score=27.80 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 499 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 499 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
-.+....++|.|..|..+..+. ..++.++..+.-..+.++..-+.++.+=|+++|||.
T Consensus 42 ~~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 42 IDHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 3344567889999887665432 135668888888888999999999999999999984
No 151
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.25 E-value=51 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=19.8
Q ss_pred eeEEcCCCCCc-----ccchhhhhcc--cccCCCCCCC
Q 008553 96 IRIKCAVCPDF-----DLCIECFSVG--VEVHPHKSNH 126 (561)
Q Consensus 96 ~ri~C~~C~df-----dLC~~CF~~G--~e~~~Hk~~H 126 (561)
-+++|.+|..+ --|..|+... -++..++-.|
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~~ 47 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTH 47 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCSC
T ss_pred ceeecccccccCCCccchhHHHHHhhcccCCCcccCcc
Confidence 57788888654 3688888763 3444555444
No 152
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=22.65 E-value=98 Score=25.78 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 507 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 507 rL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 35 ~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 35 GLTPTQWAALVRLG-----ETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp CCCHHHHHHHHHHH-----HHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67777776654332 34577888888888999999999999999999984
No 153
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.44 E-value=1e+02 Score=26.03 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=35.6
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 506 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 506 lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 35566665544322 2456 7777777778899999999999999999983
No 154
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.96 E-value=1.1e+02 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----CCchhHHHHHHHHHHCCCCC
Q 008553 507 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 507 rL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 560 (561)
+|.|..+..|+-+ ..+|.++..+....+. +..+-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L-----~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVI-----WKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHH-----HTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHH-----HcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 4555555554422 1356677666665554 57889999999999999984
No 155
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.91 E-value=68 Score=27.36 Aligned_cols=52 Identities=6% Similarity=0.035 Sum_probs=39.7
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCC
Q 008553 508 LAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 559 (561)
Q Consensus 508 L~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi 559 (561)
+.+..|-.+++.|..-+..+|.++.++++.++.+--.-+-.|.+||-+.||.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4566777777777554457899999999999976555555799999998873
No 156
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.48 E-value=1e+02 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCCCHHHhhhhh-----cCCchhHHHHHHHHHHCCCCC
Q 008553 528 NVNNKADAHHLF-----KIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 528 g~lkk~dA~~l~-----kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+.++..+....+ .+...-+.|..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 678888888777 799999999999999999973
No 157
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=21.39 E-value=59 Score=33.43 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCccccccccccCC--ceeEEcCCCCCcccchhhhhccc
Q 008553 81 ALYHCNYCNKDITG--KIRIKCAVCPDFDLCIECFSVGV 117 (561)
Q Consensus 81 ~~~~Cd~C~~~i~~--~~ri~C~~C~dfdLC~~CF~~G~ 117 (561)
....|..|+..+.+ ..+++|..|. +..|..|.....
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~-~~~h~~C~~~~~ 393 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCR-APAHKECLGRVP 393 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTC-CEECGGGGGGSC
T ss_pred CCCCCccccchhceeCCCCCCCCCCc-CccchhhhhhCC
Confidence 34689999987642 3789999996 889999988643
No 158
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.93 E-value=1e+02 Score=25.65 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=36.0
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----CCchhHHHHHHHHHHCCCCC
Q 008553 506 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 506 lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~k----iD~~K~~rIydFlv~~Gwi~ 560 (561)
.+|.|..|..|.-+- ..|.++..+....+. ++.+-+.++.+=|+++|||.
T Consensus 6 ~~Lt~~q~~vL~~L~-----~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 6 VEISMAEWDVMNIIW-----DKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp CCCCHHHHHHHHHHH-----HSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 467788887776432 345566555555554 57999999999999999984
No 159
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.74 E-value=69 Score=29.78 Aligned_cols=55 Identities=9% Similarity=-0.106 Sum_probs=43.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 501 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 501 ~LC~~lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
..+..++|.|..|..+.-+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 39 ~~l~~~gLt~~q~~iL~~L~-----~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 39 QWLKPYDLNINEHHILWIAY-----QLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHTGGGTCCHHHHHHHHHHH-----HHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34466789999998775432 23567777777788999999999999999999983
No 160
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=20.11 E-value=1.3e+02 Score=26.42 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=40.5
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 506 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 506 lrL~P~~YL~iK~~LirE~~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
.+|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|+++|||.
T Consensus 41 ~~lt~~~~~iL~~L~-----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 41 ENITIPQFRTLVILS-----NHGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp SSCCHHHHHHHHHHH-----HHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----HcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 488888887765432 34567888888888999999999999999999983
No 161
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.09 E-value=1e+02 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=29.2
Q ss_pred HhCCCCCHHHhhhhhcCCchhHHHHHHHHHHCCCCC
Q 008553 525 FSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 560 (561)
Q Consensus 525 ~~~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi~ 560 (561)
+..| ..+.+.-..+.+....++++.+||.++|+|.
T Consensus 17 i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 17 CKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 3456 7777777778899999999999999999984
Done!