Your job contains 1 sequence.
>008555
MMNNNNTPMKNTGTLTGSQSMAMNSQSHLLSQTQGQTRDGSHFPGHFHLSEPHAHALAQA
QYAHAHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTPNAGGNVG
VSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRKKRKLPEKQI
PDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTFANQ
DETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQS
LYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIE
VDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPP
PPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASI
KKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWV
EDAVIRYMNRKSAGSDAAGST
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008555
(561 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174638 - symbol:CHC1 "AT5G14170" species:3702... 1537 5.3e-160 2
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 1331 1.3e-137 2
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 687 2.9e-70 2
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 695 1.7e-68 1
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 683 3.1e-67 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 680 6.5e-67 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 679 8.2e-67 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 679 8.2e-67 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 674 2.8e-66 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 673 3.6e-66 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 667 1.5e-65 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 666 2.0e-65 1
UNIPROTKB|Q17QK5 - symbol:SMARCD3 "SWI/SNF related, matri... 652 6.0e-64 1
UNIPROTKB|Q6STE5 - symbol:SMARCD3 "SWI/SNF-related matrix... 651 7.6e-64 1
MGI|MGI:1914243 - symbol:Smarcd3 "SWI/SNF related, matrix... 651 7.6e-64 1
RGD|1311869 - symbol:Smarcd3 "SWI/SNF related, matrix ass... 650 9.7e-64 1
UNIPROTKB|F1SSN0 - symbol:SMARCD3 "Uncharacterized protei... 647 2.0e-63 1
RGD|69289 - symbol:Smarcd2 "SWI/SNF related, matrix assoc... 603 1.6e-61 2
MGI|MGI:1933621 - symbol:Smarcd2 "SWI/SNF related, matrix... 602 2.6e-61 2
UNIPROTKB|E1C555 - symbol:SMARCD2 "Uncharacterized protei... 619 1.9e-60 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 608 2.7e-59 1
UNIPROTKB|Q92925 - symbol:SMARCD2 "SWI/SNF-related matrix... 601 1.5e-58 1
UNIPROTKB|F1RSJ9 - symbol:SMARCD2 "Uncharacterized protei... 601 1.5e-58 1
UNIPROTKB|E1BJD1 - symbol:SMARCD2 "SWI/SNF-related matrix... 600 1.9e-58 1
UNIPROTKB|F1SHA1 - symbol:SMARCD1 "Uncharacterized protei... 517 1.2e-49 1
DICTYBASE|DDB_G0273725 - symbol:snf12-2 "SWI/SNF protein ... 509 8.5e-49 1
DICTYBASE|DDB_G0273203 - symbol:snf12-1 "SWI/SNF protein ... 509 8.5e-49 1
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 491 6.9e-47 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 269 1.1e-32 2
SGD|S000005306 - symbol:SNF12 "73 kDa subunit of the SWI/... 111 1.4e-10 3
CGD|CAL0006320 - symbol:orf19.2265 species:5476 "Candida ... 114 2.7e-08 2
UNIPROTKB|Q59Z35 - symbol:SNF12 "Putative uncharacterized... 114 2.7e-08 2
UNIPROTKB|F8VW95 - symbol:SMARCD1 "SWI/SNF-related matrix... 130 1.1e-07 1
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 137 8.9e-07 1
SGD|S000000648 - symbol:RSC6 "Component of the RSC chroma... 87 2.1e-06 3
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 111 1.2e-05 1
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 120 0.00015 1
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 100 0.00019 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 104 0.00021 1
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 113 0.00053 1
UNIPROTKB|G4MMD0 - symbol:MGG_01988 "Uncharacterized prot... 115 0.00058 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 100 0.00093 1
>TAIR|locus:2174638 [details] [associations]
symbol:CHC1 "AT5G14170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0048364 "root development"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0010224
"response to UV-B" evidence=IEP] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] InterPro:IPR003121
Pfam:PF02201 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
EMBL:AB007650 GO:GO:0048364 GO:GO:0010224 SUPFAM:SSF47592
eggNOG:COG5531 HOGENOM:HOG000240746 KO:K11650 OMA:NTFYPSK
EMBL:BT008892 EMBL:AY065106 IPI:IPI00539458 RefSeq:NP_196921.1
UniGene:At.6512 PDB:1V31 PDBsum:1V31 ProteinModelPortal:Q9FMT4
SMR:Q9FMT4 IntAct:Q9FMT4 STRING:Q9FMT4 PaxDb:Q9FMT4 PRIDE:Q9FMT4
EnsemblPlants:AT5G14170.1 GeneID:831267 KEGG:ath:AT5G14170
TAIR:At5g14170 InParanoid:Q9FMT4 PhylomeDB:Q9FMT4
ProtClustDB:CLSN2687209 EvolutionaryTrace:Q9FMT4
Genevestigator:Q9FMT4 GermOnline:AT5G14170 Uniprot:Q9FMT4
Length = 534
Score = 1537 (546.1 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
Identities = 296/450 (65%), Positives = 362/450 (80%)
Query: 112 TPNAGGNVGVSSPAVSTPGTGGSAKRATQKXXXXXXXXXXXXXXXXLFKTTELTPAARRK 171
+P GG +G SSP+++TPG+ + KR QK +T ELTPAAR+K
Sbjct: 86 SPGIGG-LGPSSPSLTTPGSL-NMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKK 143
Query: 172 KRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRM 231
K+KLPEK + ++VAAILPE ALYTQLLEFE+RVD+AL RKK+DIQE+LKNPP +QKTLR+
Sbjct: 144 KQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRI 203
Query: 232 YVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFK 291
YVFN+FANQ+ T P + P W+LK+IGRILEDG DP G +QK++ L+PKFSSFFK
Sbjct: 204 YVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFK 263
Query: 292 KITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
++T+ LDQ LYP+N +I+WE+ARSPA EGFE+KRKG++EF A IR+EMNY PEK KLS
Sbjct: 264 RVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLST 323
Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
+LM++LGIEV+TRPRIIAAIWHYVK +KLQ+PNDPS F CD LQK FGEEK+KF +SQ
Sbjct: 324 ALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQ 383
Query: 412 KISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
KIS EHKIKLSGN+PA ++CYD+LVDVPFP+++++ LAN EKNKEI+A
Sbjct: 384 KISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEA 443
Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
CDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRNAE+ERR
Sbjct: 444 CDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERR 503
Query: 532 SDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 560
SDFFNQPWVEDAVIRY+NR+ +AG+D GS
Sbjct: 504 SDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
Score = 43 (20.2 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTPGTGGSAK 136
PQ P GN G++S +V PG G A+
Sbjct: 11 PQGSAPLPFGNPGMASASV--PGNQGFAQ 37
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 1331 (473.6 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 260/393 (66%), Positives = 313/393 (79%)
Query: 163 ELTPAARRKKRKLPEKQ-IPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKN 221
ELTPA+R+KK KLP+K + ++VAA+LPE ALYTQLLEFE+RVD+AL RKK+DIQ+SLKN
Sbjct: 74 ELTPASRKKKHKLPDKSSLQERVAAVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKN 133
Query: 222 PPRVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDT 281
PP +QKTLR+YVFNTF+NQ P+ P W+L++ GR+L+ GL+Q S+
Sbjct: 134 PPSIQKTLRIYVFNTFSNQIP-GPDP-----PTWTLRIFGRVLDPDHT---GGLVQNSNP 184
Query: 282 LYPKFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMN 341
LYPKFSSFFK + I LDQSLYP+NH+I W+ RSPA EGFE+KR G +EF A I +EMN
Sbjct: 185 LYPKFSSFFKTLKISLDQSLYPENHLIEWKRDRSPAPLEGFEIKRIGCQEFAATILLEMN 244
Query: 342 YFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGE 401
Y PEK K SP+LM++LGIEVDTRPRIIAAIWHYVKV+KLQ+PNDPS F CD L FGE
Sbjct: 245 YVPEKFKTSPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGE 304
Query: 402 EKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLA 461
EK+KF +S KISQ HKIKLSGN+PA ++CYD+LVD+P P++ E++ LA
Sbjct: 305 EKMKFTMLSHKISQHLSPPPPIQLVHKIKLSGNNPAISACYDVLVDIPAPVQTELSNLLA 364
Query: 462 NMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGD 521
N EKNKEI+ACDE IC +I+KIHEHRRRRAFFLGFSQSP EF NAL+ SQ+KDLKLVAG+
Sbjct: 365 NPEKNKEIEACDEAICGAIRKIHEHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAGE 424
Query: 522 ASRNAEKERRSDFFNQPWVEDAVIRYMNRKSAG 554
ASRNAEKE RS+FFNQPWVEDA IRY+NRK AG
Sbjct: 425 ASRNAEKEGRSEFFNQPWVEDAAIRYLNRKPAG 457
Score = 37 (18.1 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 30 LSQTQGQTRDGSHFP 44
LSQ QG + G FP
Sbjct: 44 LSQDQGISAPGRRFP 58
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 687 (246.9 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 153/440 (34%), Positives = 232/440 (52%)
Query: 116 GGNVGVSSPAVSTPGTGGS-AKRATQKXXXXXXXXXXXXXXXXLFKTTELTPAARR--KK 172
G + P++ PG GGS A R + P KK
Sbjct: 67 GSRLAPQGPSMGPPGYGGSPAVRPGMAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAKK 126
Query: 173 RKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMY 232
+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR++
Sbjct: 127 KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF 186
Query: 233 VFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKK 292
+ NTF N ++ E G W L++ GR+LED QK KFSSFFK
Sbjct: 187 ISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKS 240
Query: 293 ITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
+ I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL P
Sbjct: 241 LVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDP 300
Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I Q
Sbjct: 301 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQ 360
Query: 412 KISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
++ H I + N T+CYD+ V+V L+ +M +FL + +EI A
Sbjct: 361 RLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAA 420
Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N E+ERR
Sbjct: 421 LDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERR 479
Query: 532 SDFFNQPWVEDAVIRYMNRK 551
++F+ QPW ++AV RY K
Sbjct: 480 AEFYFQPWAQEAVCRYFYSK 499
Score = 43 (20.2 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 109 QLQTPNAGGNVGVSSPAVSTPGTGGSAKR 137
Q TP+ GG + PGT G R
Sbjct: 12 QSVTPSGGGGGAAAGAGALGPGTPGGPVR 40
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 150/398 (37%), Positives = 232/398 (58%)
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
A +KK+KL EK +P KV ++PE Y LL FE ++D+ + RK++DIQE+LK P + +
Sbjct: 122 ATAKKKKKLAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQK 181
Query: 227 KTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQ-DPVLAGLMQKSDTLYPK 285
+ LR+++ NTF E + + + G W L++ GR+LEDG+ DP + + K
Sbjct: 182 RKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGKGDP--------NTKIKRK 233
Query: 286 FSSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFP 344
FSSFFK + I LD+ LY PDNH++ W + +GF+VKR GD+ I + ++Y P
Sbjct: 234 FSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQP 293
Query: 345 EKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKI 404
+ KL P L LLG+ TRP II+A+W Y+K KLQ ++ CD L++ F +++
Sbjct: 294 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRM 353
Query: 405 KFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANME 464
KFA I Q+++ H I+ SG T+CYD+ V+V L+ +M +FL +
Sbjct: 354 KFAEIPQRLNPLLHPPDPIVINHFIE-SGAENKQTACYDIDVEVDDTLKNQMNSFLMSTA 412
Query: 465 KNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASR 524
+EI D I ++ I++ R FFL F++ P FI+ I S+++DLKL+ D +
Sbjct: 413 SQQEIQGLDTKIHETVDTINQMNTNREFFLSFAKDPQMFIHRWIISETRDLKLMT-DVAG 471
Query: 525 NAEKERRSDFFNQPWVEDAVIRY----MNRKSAGSDAA 558
N E+ERR++F+ QPW +AV RY +N+K A + A
Sbjct: 472 NPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQA 509
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 142/382 (37%), Positives = 219/382 (57%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK++ D N+E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEE 476
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 142/382 (37%), Positives = 217/382 (56%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEI 357
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 476
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 142/382 (37%), Positives = 217/382 (56%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 476
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 142/382 (37%), Positives = 217/382 (56%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 417
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 476
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 141/382 (36%), Positives = 218/382 (57%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++KF+ I
Sbjct: 298 DPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEI 357
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q++ H I + N T+CYD+ +V L+ +M +FL + +EI
Sbjct: 358 PQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEI 417
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK++ D N+E+E
Sbjct: 418 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEE 476
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 477 RRAEFYFQPWAQEAVCRYFYSK 498
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 142/378 (37%), Positives = 220/378 (58%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 92 KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 151
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+Y+ NTF N + E G W L++ G++L+D P G M++ KFSSFF
Sbjct: 152 LYISNTF-NAAKPDAEDSEGSIASWELRVEGKLLDD---P---GKMKR------KFSSFF 198
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P + KL
Sbjct: 199 KSLVIELDKDLYGPDNHLVEWHRTGTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKL 258
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
P L LLGI TR II A+W YVK KLQ +D CD Q+ F ++KF+ I
Sbjct: 259 DPRLARLLGIHTQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEI 318
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q+++ H I + N T+CYD+ V+V PL+ +M++FL + +EI
Sbjct: 319 PQRLTNLLLPPDPIVINHIISVDPNDQKKTACYDIDVEVEDPLKAQMSSFLLSTANQQEI 378
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
+ D I +I+ I++ + +R F L FS+ P +I + SQS+DLKL+ D + N E+E
Sbjct: 379 ASLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMT-DVAGNPEEE 437
Query: 530 RRSDFFNQPWVEDAVIRY 547
RR++F++QPW ++AV RY
Sbjct: 438 RRAEFYHQPWSQEAVSRY 455
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 143/380 (37%), Positives = 222/380 (58%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 78 KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 137
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+Y+ NTF N ++ + G W L++ G++L+D L+ QK KFSSFF
Sbjct: 138 LYISNTF-NPAKSDADDSDGSIASWELRVEGKLLDD-----LS--KQKR-----KFSSFF 184
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEMNYFPEKS 347
K + I LD+ LY PDNH++ W R+P E GF+VKR GD + + ++Y P +
Sbjct: 185 KSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQF 242
Query: 348 KLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFA 407
KL P L LLGI TR II A+W Y+K KLQ +D CD Q+ F ++KF+
Sbjct: 243 KLDPRLARLLGIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFS 302
Query: 408 TISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNK 467
I Q+++ H I + N T+CYD+ V+V PL+ +M++FL + +
Sbjct: 303 EIPQRLTNLLLPPDPIVINHIISVDPNDQKKTACYDIDVEVEDPLKGQMSSFLLSTANQQ 362
Query: 468 EIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAE 527
EI A D I +I+ I++ + +R F L FS+ P +I L+ SQS+DLK++ D N E
Sbjct: 363 EITALDNKIHETIESINQLKIQRDFMLSFSKDPKGYIQDLLRSQSRDLKVMT-DVVGNPE 421
Query: 528 KERRSDFFNQPWVEDAVIRY 547
+ERR++F+++PW ++AV RY
Sbjct: 422 EERRAEFYHEPWSQEAVSRY 441
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 145/390 (37%), Positives = 222/390 (56%)
Query: 166 PAARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRV 225
P +KK++ +K I KV ++PE Y LL FE ++DS + RKKID+QE+LK P ++
Sbjct: 45 PQPPKKKKRYADKLIQPKVRELVPESQAYMDLLAFEQKLDSTITRKKIDVQEALKRPQKI 104
Query: 226 QKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPK 285
+K LR+Y+ +TF E E P W L++ GR+L+D Q P + + + K
Sbjct: 105 KKRLRIYISHTFIAGKEPEKEGDDASVPMWELRVEGRLLDDMQHPTVGANPRPAPKR--K 162
Query: 286 FSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEMNY 342
FSSFFK + I LD+ +Y PDNH++ W R+P +E GF+VKR GD+ I + ++Y
Sbjct: 163 FSSFFKSLVIELDKDIYGPDNHLVEWH--RTPQTNETDGFQVKRPGDRPVKCTILLLLDY 220
Query: 343 FPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEE 402
P K KL P L ++LGI +TRPRII A+W Y+K KLQ P D + D L++ FG
Sbjct: 221 QPMKFKLHPRLAKVLGIAAETRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCFGVS 280
Query: 403 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTS-CYDMLVDVPFPLEKEMAAFLA 461
K++F I Q++ Q H I+ + TS CYD+ V++ P++++MA F+
Sbjct: 281 KMRFMEIPQRLHQLLQQPDPLVLNHIIQRPDDGQDKTSACYDIDVELEDPVKQQMANFVH 340
Query: 462 NMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGD 521
N +I D+ I + +I+E + RR FFL FS P FI + SQ+ DLK + +
Sbjct: 341 NQTNANDIQLLDQKIFDLVDQINEMKLRRDFFLRFSNEPSGFIKKWVVSQNSDLKTLT-E 399
Query: 522 ASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
+S + E +R + ++ ++ V RYM +K
Sbjct: 400 SSGDGESDRYATTYSTTDTDEGVSRYMYQK 429
>UNIPROTKB|Q17QK5 [details] [associations]
symbol:SMARCD3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043393 "regulation of protein binding" evidence=IEA]
[GO:0042692 "muscle cell differentiation" evidence=IEA] [GO:0035257
"nuclear hormone receptor binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 OMA:PLKSQMS
EMBL:DAAA02012020 EMBL:DAAA02012021 EMBL:DAAA02012022
EMBL:DAAA02012023 EMBL:DAAA02012024 EMBL:BC118305 IPI:IPI00788564
UniGene:Bt.53201 SMR:Q17QK5 STRING:Q17QK5
Ensembl:ENSBTAT00000028051 Uniprot:Q17QK5
Length = 470
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 142/387 (36%), Positives = 222/387 (57%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA R K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P
Sbjct: 79 PARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM 138
Query: 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+ ++ LR+Y+ NTF N + E G W L++ G++L+D QK
Sbjct: 139 KQKRKLRLYISNTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR---- 186
Query: 284 PKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEM 340
KFSSFFK + I LD+ LY PDNH++ W R+P E GF+VKR GD + + +
Sbjct: 187 -KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLML 243
Query: 341 NYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFG 400
+Y P + KL P L LLG+ +R I+ A+W YVK +LQ +D D Q+ F
Sbjct: 244 DYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 303
Query: 401 EEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFL 460
++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL
Sbjct: 304 CPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFL 363
Query: 461 ANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAG 520
+ +EI A D I +I+ I++ + +R F L FS+ P +I L+ SQS+DLK++
Sbjct: 364 LSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMT- 422
Query: 521 DASRNAEKERRSDFFNQPWVEDAVIRY 547
D + N E+ERR++F++QPW ++AV RY
Sbjct: 423 DVAGNPEEERRAEFYHQPWSQEAVSRY 449
>UNIPROTKB|Q6STE5 [details] [associations]
symbol:SMARCD3 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 3"
species:9606 "Homo sapiens" [GO:0003139 "secondary heart field
specification" evidence=IEA] [GO:0003219 "cardiac right ventricle
formation" evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043393 "regulation of protein binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016514
"SWI/SNF complex" evidence=IDA;NAS] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0005102 "receptor binding"
evidence=IPI] [GO:0035257 "nuclear hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0071565 "nBAF complex"
evidence=ISS] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP;NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IC;IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IMP] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003407 "neural retina development"
evidence=IEP] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IDA] Reactome:REACT_111217
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0005654 GO:GO:0044281 GO:GO:0043393
GO:GO:0044255 GO:GO:0006357 GO:GO:0006351 EMBL:CH471173
EMBL:AC021097 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219 EMBL:AC005486
eggNOG:COG5531 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 EMBL:U66619 EMBL:AY450430 EMBL:AY450431
EMBL:BC002628 EMBL:BC110350 IPI:IPI00106988 IPI:IPI00456146
RefSeq:NP_001003801.1 RefSeq:NP_001003802.1 RefSeq:NP_003069.2
UniGene:Hs.647067 ProteinModelPortal:Q6STE5 SMR:Q6STE5
DIP:DIP-33012N IntAct:Q6STE5 STRING:Q6STE5 PhosphoSite:Q6STE5
DMDM:57013057 PaxDb:Q6STE5 PRIDE:Q6STE5 DNASU:6604
Ensembl:ENST00000262188 Ensembl:ENST00000356800
Ensembl:ENST00000392811 GeneID:6604 KEGG:hsa:6604 UCSC:uc003wjs.3
UCSC:uc003wjt.3 CTD:6604 GeneCards:GC07M150935 HGNC:HGNC:11108
MIM:601737 neXtProt:NX_Q6STE5 PharmGKB:PA35958 InParanoid:Q6STE5
OMA:PLKSQMS OrthoDB:EOG4QFWD6 ChiTaRS:SMARCD3 GenomeRNAi:6604
NextBio:25695 ArrayExpress:Q6STE5 Bgee:Q6STE5 CleanEx:HS_SMARCD3
Genevestigator:Q6STE5 GermOnline:ENSG00000082014 Uniprot:Q6STE5
Length = 483
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 141/387 (36%), Positives = 222/387 (57%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA R K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P
Sbjct: 92 PARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM 151
Query: 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+ ++ LR+Y+ NTF N + E G W L++ G++L+D QK
Sbjct: 152 KQKRKLRLYISNTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR---- 199
Query: 284 PKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEM 340
KFSSFFK + I LD+ LY PDNH++ W R+P E GF+VKR GD + + +
Sbjct: 200 -KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLML 256
Query: 341 NYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFG 400
+Y P + KL P L LLG+ +R I+ A+W YVK +LQ +D D Q+ F
Sbjct: 257 DYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
Query: 401 EEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFL 460
++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL
Sbjct: 317 CPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFL 376
Query: 461 ANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAG 520
+ +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++
Sbjct: 377 LSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT- 435
Query: 521 DASRNAEKERRSDFFNQPWVEDAVIRY 547
D + N E+ERR++F++QPW ++AV RY
Sbjct: 436 DVAGNPEEERRAEFYHQPWSQEAVSRY 462
>MGI|MGI:1914243 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0003139 "secondary heart field specification"
evidence=IMP] [GO:0003219 "cardiac right ventricle formation"
evidence=IMP] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISO] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
[GO:0035257 "nuclear hormone receptor binding" evidence=ISO]
[GO:0042692 "muscle cell differentiation" evidence=IMP] [GO:0043393
"regulation of protein binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0071564 "npBAF complex" evidence=ISO;IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1914243 GO:GO:0005737 GO:GO:0045893 GO:GO:0043393
GO:GO:0006351 GO:GO:0006338 GO:GO:0042692 GO:GO:0000790
GO:GO:0071564 GO:GO:0003407 GO:GO:0071565 GO:GO:0006337
GO:GO:0002052 GO:GO:0030374 GO:GO:0003139 SUPFAM:SSF47592
GO:GO:0003219 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 CTD:6604 OMA:PLKSQMS OrthoDB:EOG4QFWD6
EMBL:AK005094 EMBL:AK019374 EMBL:BC013122 EMBL:BC060525
IPI:IPI00467181 RefSeq:NP_080167.3 UniGene:Mm.436539
ProteinModelPortal:Q6P9Z1 SMR:Q6P9Z1 DIP:DIP-48886N STRING:Q6P9Z1
PhosphoSite:Q6P9Z1 PaxDb:Q6P9Z1 PRIDE:Q6P9Z1
Ensembl:ENSMUST00000030791 GeneID:66993 KEGG:mmu:66993
UCSC:uc008wsd.1 InParanoid:Q6P9Z1 NextBio:323242 Bgee:Q6P9Z1
Genevestigator:Q6P9Z1 GermOnline:ENSMUSG00000028949 Uniprot:Q6P9Z1
Length = 483
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 141/387 (36%), Positives = 222/387 (57%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA R K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P
Sbjct: 92 PARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM 151
Query: 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+ ++ LR+Y+ NTF N + E G W L++ G++L+D QK
Sbjct: 152 KQKRKLRLYISNTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR---- 199
Query: 284 PKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEM 340
KFSSFFK + I LD+ LY PDNH++ W R+P E GF+VKR GD + + +
Sbjct: 200 -KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLML 256
Query: 341 NYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFG 400
+Y P + KL P L LLG+ +R I+ A+W YVK +LQ +D D Q+ F
Sbjct: 257 DYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
Query: 401 EEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFL 460
++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL
Sbjct: 317 CPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFL 376
Query: 461 ANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAG 520
+ +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++
Sbjct: 377 LSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT- 435
Query: 521 DASRNAEKERRSDFFNQPWVEDAVIRY 547
D + N E+ERR++F++QPW ++AV RY
Sbjct: 436 DVAGNPEEERRAEFYHQPWSQEAVSRY 462
>RGD|1311869 [details] [associations]
symbol:Smarcd3 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0003139 "secondary heart field specification"
evidence=IEA;ISO] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA;ISO] [GO:0003407 "neural retina development"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005102 "receptor binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=IEA;ISO] [GO:0006338 "chromatin
remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA;ISO] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity"
evidence=IEA;ISO] [GO:0035257 "nuclear hormone receptor binding"
evidence=IEA;ISO] [GO:0042692 "muscle cell differentiation"
evidence=IEA;ISO] [GO:0043393 "regulation of protein binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0071564 "npBAF
complex" evidence=IEA;ISO] [GO:0071565 "nBAF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:1311869
EMBL:CH474020 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 HOVERGEN:HBG054046 CTD:6604
OrthoDB:EOG4QFWD6 EMBL:BC085349 IPI:IPI00951770
RefSeq:NP_001011966.1 UniGene:Rn.20043 SMR:Q5U3Y2 STRING:Q5U3Y2
Ensembl:ENSRNOT00000066598 GeneID:296732 KEGG:rno:296732
InParanoid:Q5U3Y2 NextBio:641725 Genevestigator:Q5U3Y2
Uniprot:Q5U3Y2
Length = 470
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 141/387 (36%), Positives = 222/387 (57%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA R K+RK+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P
Sbjct: 79 PARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM 138
Query: 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+ ++ LR+Y+ NTF N + E G W L++ G++L+D QK
Sbjct: 139 KQKRKLRLYISNTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR---- 186
Query: 284 PKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEM 340
KFSSFFK + I LD+ LY PDNH++ W R+P E GF+VKR GD + + +
Sbjct: 187 -KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLML 243
Query: 341 NYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFG 400
+Y P + KL P L LLG+ +R I+ A+W YVK +LQ +D D Q+ F
Sbjct: 244 DYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 303
Query: 401 EEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFL 460
++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL
Sbjct: 304 CPRLKFSEIPQRLTGLLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFL 363
Query: 461 ANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAG 520
+ +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++
Sbjct: 364 LSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT- 422
Query: 521 DASRNAEKERRSDFFNQPWVEDAVIRY 547
D + N E+ERR++F++QPW ++AV RY
Sbjct: 423 DVAGNPEEERRAEFYHQPWSQEAVSRY 449
>UNIPROTKB|F1SSN0 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043393 "regulation
of protein binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003407 "neural retina development"
evidence=IEA] [GO:0003219 "cardiac right ventricle formation"
evidence=IEA] [GO:0003139 "secondary heart field specification"
evidence=IEA] [GO:0002052 "positive regulation of neuroblast
proliferation" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0042692 GO:GO:0000790 GO:GO:0071564 GO:GO:0003407
GO:GO:0071565 GO:GO:0006337 GO:GO:0002052 GO:GO:0030374
GO:GO:0003139 SUPFAM:SSF47592 GO:GO:0003219
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:PLKSQMS EMBL:FP102583 Ensembl:ENSSSCT00000017896 Uniprot:F1SSN0
Length = 486
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 140/380 (36%), Positives = 218/380 (57%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K E+ +P K+ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 102 KKKKKAEQILPQKIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR 161
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+Y+ NTF N + E G W L++ G++L+D QK KFSSFF
Sbjct: 162 LYISNTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR-----KFSSFF 208
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEMNYFPEKS 347
K + I LD+ LY PDNH++ W R+P E GF+VKR GD + + ++Y P +
Sbjct: 209 KSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQF 266
Query: 348 KLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFA 407
KL P L LLG+ +R I+ A+W YVK +LQ +D D Q+ F ++KF+
Sbjct: 267 KLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFS 326
Query: 408 TISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNK 467
I Q+++ H I + + T+CYD+ V+V PL+ +M++FL + +
Sbjct: 327 EIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQ 386
Query: 468 EIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAE 527
EI A D I +I+ I++ + +R F L FS+ P +I L+ SQS+DLK++ D + N E
Sbjct: 387 EISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYIQDLLRSQSRDLKVMT-DVAGNPE 445
Query: 528 KERRSDFFNQPWVEDAVIRY 547
+ERR++F++QPW ++AV RY
Sbjct: 446 EERRAEFYHQPWSQEAVSRY 465
>RGD|69289 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:69289
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:AB003504 EMBL:AB003505 EMBL:BC062063 IPI:IPI00198069 PIR:JC6508
RefSeq:NP_114189.1 UniGene:Rn.3053 ProteinModelPortal:O54772
STRING:O54772 PhosphoSite:O54772 Ensembl:ENSRNOT00000014508
GeneID:83833 KEGG:rno:83833 InParanoid:O54772 NextBio:616469
Genevestigator:O54772 GermOnline:ENSRNOG00000010557 Uniprot:O54772
Length = 531
Score = 603 (217.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 139/401 (34%), Positives = 222/401 (55%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A+ D + G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDK 330
QK KFSSFFK + I LD+ LY PDNH++ W R P E GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWH--RMPTTQETDGFQVKRPGDL 294
Query: 331 EFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFM 390
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++
Sbjct: 295 NVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYIN 354
Query: 391 CDPPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPF 450
C+ ++ F +++F+ I K++ H I + N T+CYD+ V+V
Sbjct: 355 CNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDD 414
Query: 451 PLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIAS 510
PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + S
Sbjct: 415 PLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRS 474
Query: 511 QSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
Q +DLK++ D N E+ERR+ F++QPW ++AV R++ K
Sbjct: 475 QRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 514
Score = 44 (20.5 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 107 HPQLQTPNAGGNVGVSSPAVSTP-GTGGSA 135
+P L+ P G +GV A P G G A
Sbjct: 39 NPALRGPGPSGGMGVPGAAAFRPMGPAGPA 68
>MGI|MGI:1933621 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 MGI:MGI:1933621
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 EMBL:AL604045
GermOnline:ENSMUSG00000040699 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:BC005732 IPI:IPI00115461 IPI:IPI00649685 RefSeq:NP_001123659.1
RefSeq:NP_114084.2 UniGene:Mm.21772 ProteinModelPortal:Q99JR8
SMR:Q99JR8 DIP:DIP-58950N IntAct:Q99JR8 STRING:Q99JR8
PhosphoSite:Q99JR8 PaxDb:Q99JR8 PRIDE:Q99JR8 DNASU:83796
Ensembl:ENSMUST00000021052 Ensembl:ENSMUST00000106843 GeneID:83796
KEGG:mmu:83796 InParanoid:B1ARJ6 NextBio:350778 Bgee:Q99JR8
Genevestigator:Q99JR8 Uniprot:Q99JR8
Length = 531
Score = 602 (217.0 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 139/401 (34%), Positives = 221/401 (55%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A+ D G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKADGDNAGTAGTPGGTPAADKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDK 330
QK KFSSFFK + I LD+ LY PDNH++ W R P E GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWH--RMPTTQETDGFQVKRPGDL 294
Query: 331 EFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFM 390
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++
Sbjct: 295 NVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYIN 354
Query: 391 CDPPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPF 450
C+ ++ F +++F+ I K++ H I + N T+CYD+ V+V
Sbjct: 355 CNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDD 414
Query: 451 PLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIAS 510
PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + S
Sbjct: 415 PLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRS 474
Query: 511 QSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
Q +DLK++ D N E+ERR+ F++QPW ++AV R++ K
Sbjct: 475 QRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 514
Score = 43 (20.2 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTP-GTGGSA 135
P L+ P G +GV A P G G A
Sbjct: 40 PALRGPGPSGGMGVPGAAAFRPMGPAGPA 68
>UNIPROTKB|E1C555 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:TQTRASI EMBL:AADN02056697 EMBL:AADN02056698 EMBL:AADN02056699
EMBL:AADN02056700 EMBL:AADN02056701 EMBL:AADN02056702
IPI:IPI00593811 Ensembl:ENSGALT00000000495 NextBio:20829314
Uniprot:E1C555
Length = 475
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 135/383 (35%), Positives = 217/383 (56%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P ++ LR
Sbjct: 92 KRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLR 151
Query: 231 MYVFNTFANQDETSPEKKTGE-APCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSF 289
+Y+ NTF E E + GE W L++ G++LED QK KFSSF
Sbjct: 152 IYISNTFTPAKE---EGEGGERVASWELRVEGKLLEDPSK-------QKR-----KFSSF 196
Query: 290 FKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSK 348
FK + I LD+ LY PDNH++ W + +GF+VKR GD + + +++ P + K
Sbjct: 197 FKSLVIELDKELYGPDNHLVEWHRLPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYK 256
Query: 349 LSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFAT 408
L P L LLG+ TR I+ A+W Y+K KLQ ++ C+ ++ F +++F+
Sbjct: 257 LDPRLARLLGVHTQTRASIMQALWLYIKHNKLQDSHEKEYINCNRYFRQIFNCVRMRFSE 316
Query: 409 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKE 468
I K++ H I + N T+CYD+ V+V PL+ +M+ FLA+ +E
Sbjct: 317 IPMKLAGLLQHPDPIIINHTISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQE 376
Query: 469 IDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEK 528
I + D I +I+ I++ + +R F L FS +P +FI I SQ +DLK++ D N E+
Sbjct: 377 IASLDAKIHETIESINQLKTQRDFMLSFSNNPQDFIQEWIKSQRRDLKIIT-DVIGNPEE 435
Query: 529 ERRSDFFNQPWVEDAVIRYMNRK 551
ERR++F+ QPW ++AV R++ K
Sbjct: 436 ERRAEFYQQPWAQEAVGRHIFAK 458
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 145/394 (36%), Positives = 221/394 (56%)
Query: 166 PAARR-KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPR 224
PAA KK+K +K I K+ + P+ Y LL E ++DS L+RKK+DIQE+LK P +
Sbjct: 47 PAAPLPKKKKYADKCIHPKIRELEPDAENYMALLASEQKLDSTLSRKKLDIQEALKRPSK 106
Query: 225 VQKTLRMYVFNTFANQDETSPEKKTGEA--PCWSLKLIGRILEDGQDPVLAGLMQKSDTL 282
V+K LR+Y+ +TF +E PEK T EA P W L++ GR+L++ Q P A + +
Sbjct: 107 VKKRLRIYISHTFI--EEKQPEKDTDEASLPMWELRVEGRLLDE-QPPAPA-IPGQRPVP 162
Query: 283 YPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIE 339
KFSSFFK + I LD+ +Y PD H++ W R+P +E GF+VKR GD+ I +
Sbjct: 163 KRKFSSFFKSLVIELDKEMYGPDQHLVEWH--RTPQTNETDGFQVKRAGDRPVKCRILLL 220
Query: 340 MNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAF 399
++ P K KL P L ++LGI +TRP+II A+W Y+K LQ P + CD L + F
Sbjct: 221 LDNHPAKFKLHPRLAKVLGIATETRPKIIEALWQYIKTHGLQDPQERDIINCDTFLSQCF 280
Query: 400 GEEKIKFATISQKISQXXXXXXXXXXEHKIKL--SGNSPAGTSCYDMLVDVPFPLEKEMA 457
G +++F + K+ Q H I+ G T CYD+ V++ P+++ M
Sbjct: 281 GVNRMRFMEVPNKLHQLLQQTDPLEFNHIIQRPKEGQEQVST-CYDIDVEMEDPVKQFMH 339
Query: 458 AFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKL 517
F+ + +I D+ I++I+E + RR F+ F P EFI + + SQ+ DLK
Sbjct: 340 TFVHSPGLANDIQTLDQKCYDIIEQINELKTRRDFYARFYTEPAEFIKSWVMSQNSDLKT 399
Query: 518 VAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
+ + S + E ER ++ + +P E+ V RYM +K
Sbjct: 400 M-NELSGDLEAERFAESYVRPETEEGVQRYMFQK 432
>UNIPROTKB|Q92925 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0006357
GO:GO:0006351 GO:GO:0006338 GO:GO:0003713 GO:GO:0016514
EMBL:CH471109 GO:GO:0006337 SUPFAM:SSF47592 EMBL:AC015651
eggNOG:COG5531 KO:K11650 HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI
EMBL:U66618 EMBL:AK300939 EMBL:AK303951 EMBL:BC018953 EMBL:BC142963
EMBL:AF113019 IPI:IPI00514042 IPI:IPI00853043 IPI:IPI00939917
RefSeq:NP_001091896.1 UniGene:Hs.250581 ProteinModelPortal:Q92925
SMR:Q92925 DIP:DIP-31182N IntAct:Q92925 MINT:MINT-1138034
STRING:Q92925 PhosphoSite:Q92925 DMDM:57013095 PaxDb:Q92925
PRIDE:Q92925 Ensembl:ENST00000323347 Ensembl:ENST00000448276
GeneID:6603 KEGG:hsa:6603 UCSC:uc010dea.1 UCSC:uc010wpt.1
GeneCards:GC17M061909 H-InvDB:HIX0014075 HGNC:HGNC:11107 MIM:601736
neXtProt:NX_Q92925 PharmGKB:PA35957 OrthoDB:EOG4WQ12P
ChiTaRS:SMARCD2 GenomeRNAi:6603 NextBio:25689 ArrayExpress:Q92925
Bgee:Q92925 CleanEx:HS_SMARCD2 Genevestigator:Q92925
GermOnline:ENSG00000108604 Uniprot:Q92925
Length = 531
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 139/401 (34%), Positives = 220/401 (54%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A D G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDK 330
QK KFSSFFK + I LD+ LY PDNH++ W R P E GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWH--RMPTTQETDGFQVKRPGDL 294
Query: 331 EFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFM 390
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++
Sbjct: 295 NVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYIN 354
Query: 391 CDPPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPF 450
C+ ++ F +++F+ I K++ H I + N T+CYD+ V+V
Sbjct: 355 CNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDD 414
Query: 451 PLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIAS 510
PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + S
Sbjct: 415 PLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRS 474
Query: 511 QSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
Q +DLK++ D N E+ERR+ F++QPW ++AV R++ K
Sbjct: 475 QRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|F1RSJ9 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 OMA:TQTRASI EMBL:CU466386
Ensembl:ENSSSCT00000018818 Uniprot:F1RSJ9
Length = 531
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 136/399 (34%), Positives = 219/399 (54%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A D G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKAEGDSAGSAGTPGGTPAGDKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEF 332
QK KFSSFFK + I LD+ LY PDNH++ W + +GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWHRMXTTQETDGFQVKRPGDLNV 296
Query: 333 TAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD 392
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++ C+
Sbjct: 297 KCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCN 356
Query: 393 PPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPL 452
++ F +++F+ I K++ H I + N T+CYD+ V+V PL
Sbjct: 357 RYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPL 416
Query: 453 EKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQS 512
+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ
Sbjct: 417 KAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQR 476
Query: 513 KDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
+DLK++ D N E+ERR+ F++QPW ++AV R++ K
Sbjct: 477 RDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|E1BJD1 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9913 "Bos taurus" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0006355 GO:GO:0006351
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 KO:K11650 EMBL:AAFC03085035
IPI:IPI00703184 RefSeq:NP_001192391.1 UniGene:Bt.1380
Ensembl:ENSBTAT00000028049 GeneID:789613 KEGG:bta:789613 CTD:6603
OMA:TQTRASI NextBio:20929791 Uniprot:E1BJD1
Length = 531
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 139/401 (34%), Positives = 220/401 (54%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A D G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKAEGDTAGTTGTPGGTPAGDKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDK 330
QK KFSSFFK + I LD+ LY PDNH++ W R P E GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWH--RMPTTQETDGFQVKRPGDL 294
Query: 331 EFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFM 390
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++
Sbjct: 295 NVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYIN 354
Query: 391 CDPPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPF 450
C+ ++ F +++F+ I K++ H I + N T+CYD+ V+V
Sbjct: 355 CNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDD 414
Query: 451 PLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIAS 510
PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + S
Sbjct: 415 PLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRS 474
Query: 511 QSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMNRK 551
Q +DLK++ D N E+ERR+ F++QPW ++AV R++ K
Sbjct: 475 QRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 514
>UNIPROTKB|F1SHA1 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=IEA] [GO:0032947 "protein complex
scaffold" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
GeneTree:ENSGT00390000017809 EMBL:CU457393
Ensembl:ENSSSCT00000000230 OMA:XWHRTAT ArrayExpress:F1SHA1
Uniprot:F1SHA1
Length = 513
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 122/382 (31%), Positives = 194/382 (50%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLR 230
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR
Sbjct: 124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR 183
Query: 231 MYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFF 290
+++ NTF N ++ E G W L++ GR+LED QK KFSSFF
Sbjct: 184 IFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFF 237
Query: 291 KKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKL 349
K + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y L
Sbjct: 238 KSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQEPPYFL 297
Query: 350 SPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATI 409
L+ LGI TR R A+W ++ Q P+ + ++ + +
Sbjct: 298 GTELLRPLGISRQTRLRSCVALWTFIATAT-QDPSHNCNVHHSSQQRQILNSLRPGIELM 356
Query: 410 SQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEI 469
Q + N T+CYD+ V+V L+ +M +FL + +EI
Sbjct: 357 DQT-HNLMVPTLYQALVFLPSVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEI 415
Query: 470 DACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKE 529
D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N E+E
Sbjct: 416 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEE 474
Query: 530 RRSDFFNQPWVEDAVIRYMNRK 551
RR++F+ QPW ++AV RY K
Sbjct: 475 RRAEFYFQPWAQEAVCRYFYSK 496
>DICTYBASE|DDB_G0273725 [details] [associations]
symbol:snf12-2 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 119/389 (30%), Positives = 209/389 (53%)
Query: 176 PEKQIP-DKVAAILPECALYTQLLEFEARVDSALARKKIDIQE-SLKNPPRVQKTLRMYV 233
P +P +++ + PEC L++QLLEFE ++D+++ ++ IDIQE S +N + +TLR+ +
Sbjct: 61 PSVTLPVEELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSI 120
Query: 234 FNTFANQD-----ETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYP---- 284
+NT++NQ + E P WSL++ G++L++ QD ++ ++ S +
Sbjct: 121 YNTYSNQSAYYHLDNKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANK 180
Query: 285 -KFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYF 343
KFSSFFKK+ I + W+ +++ +GFE+KR G++E I + +++
Sbjct: 181 RKFSSFFKKVFIQIGH-----RDTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHV 235
Query: 344 PEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEK 403
P+K K+ L +LL I DT+PRII A+WHY+K L + CD L+ F E+
Sbjct: 236 PQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDA-ETKKITCDENLKNIFSLEE 294
Query: 404 IKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANM 463
++F I Q + + ++ + LSG++ YD+ V+V P+ F N
Sbjct: 295 LQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNP 348
Query: 464 EKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDAS 523
KEI ++ I I+K+++H+R+R F S P F+N A+ KD ++ S
Sbjct: 349 TMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTS 408
Query: 524 RNAEKERRSDFFNQPWVEDAVIRYMNRKS 552
E+ER + F+ QP E+ V Y+++++
Sbjct: 409 TGFEEERHASFYYQPMTEELVKNYLSKQT 437
>DICTYBASE|DDB_G0273203 [details] [associations]
symbol:snf12-1 "SWI/SNF protein SNF12" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003121 Pfam:PF02201
dictyBase:DDB_G0273725 dictyBase:DDB_G0273203 GO:GO:0005654
GO:GO:0006355 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0016568
EMBL:AAFI02000011 EMBL:AAFI02000009 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11650 RefSeq:XP_644479.1 RefSeq:XP_644771.1
ProteinModelPortal:Q556Z0 PRIDE:Q556Z0 EnsemblProtists:DDB0233489
EnsemblProtists:DDB0266583 GeneID:8618873 GeneID:8619103
KEGG:ddi:DDB_G0273203 KEGG:ddi:DDB_G0273725 OMA:MRFMEIP
ProtClustDB:CLSZ2428982 Uniprot:Q556Z0
Length = 456
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 119/389 (30%), Positives = 209/389 (53%)
Query: 176 PEKQIP-DKVAAILPECALYTQLLEFEARVDSALARKKIDIQE-SLKNPPRVQKTLRMYV 233
P +P +++ + PEC L++QLLEFE ++D+++ ++ IDIQE S +N + +TLR+ +
Sbjct: 61 PSVTLPVEELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSI 120
Query: 234 FNTFANQD-----ETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYP---- 284
+NT++NQ + E P WSL++ G++L++ QD ++ ++ S +
Sbjct: 121 YNTYSNQSAYYHLDNKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANK 180
Query: 285 -KFSSFFKKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYF 343
KFSSFFKK+ I + W+ +++ +GFE+KR G++E I + +++
Sbjct: 181 RKFSSFFKKVFIQIGH-----RDTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHV 235
Query: 344 PEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEK 403
P+K K+ L +LL I DT+PRII A+WHY+K L + CD L+ F E+
Sbjct: 236 PQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDA-ETKKITCDENLKNIFSLEE 294
Query: 404 IKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANM 463
++F I Q + + ++ + LSG++ YD+ V+V P+ F N
Sbjct: 295 LQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNP 348
Query: 464 EKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDAS 523
KEI ++ I I+K+++H+R+R F S P F+N A+ KD ++ S
Sbjct: 349 TMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTS 408
Query: 524 RNAEKERRSDFFNQPWVEDAVIRYMNRKS 552
E+ER + F+ QP E+ V Y+++++
Sbjct: 409 TGFEEERHASFYYQPMTEELVKNYLSKQT 437
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 117/395 (29%), Positives = 201/395 (50%)
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
A +K ++ E++IPD + +PE Y L + E ++DS + RK+ D+Q+SL
Sbjct: 20 AELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKT 79
Query: 227 KTLRMYVFNTFANQD----ETSPEKKTGEA-----PCWSLKLIGRILEDGQDPVLAGLMQ 277
+ LRMY+ +T ANQ + E +G+ P W+L + GR+L + D
Sbjct: 80 RILRMYIHSTVANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDED-----D 134
Query: 278 KSDTLYPKFSSFFKKITIYLDQS--LYPDNHVILWESARSPA-LHEGFEVKRKGDKEFTA 334
K+ L P F++FF+KI I + +S LYP + + W + G V RKGD+
Sbjct: 135 KAFELAP-FTNFFRKIAIQILRSDDLYPSGNYVEWNKLPDNSNTSNGITVTRKGDQSVDV 193
Query: 335 IIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPP 394
I + PE+ KLS + +LGI TRP I++ +W Y+K +LQ + CD
Sbjct: 194 KIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKA 253
Query: 395 LQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEK 454
L+ F +++ F I + +++ + I +S ++ + +D+ ++ P
Sbjct: 254 LRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHS 313
Query: 455 EMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKD 514
++ +FLA M +I + D+ + I+ I + + F FS+SP EFIN I SQS+D
Sbjct: 314 QIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRD 373
Query: 515 LKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMN 549
L++V + N ++R +D++ QPWV ++ Y+N
Sbjct: 374 LEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 269 (99.8 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 86/317 (27%), Positives = 138/317 (43%)
Query: 265 EDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQS--LYP-DNHVILWESARSP--ALH 319
EDG D A ++S+ +FS FFK IT+ D+S P + I W + P A++
Sbjct: 157 EDGSDGKKAATTKRSEQ---RFSHFFKSITVDFDKSPSTSPAEMQTITWTKPQVPPNAVN 213
Query: 320 -------EGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIW 372
+ + R + I + + PE+ KLS L E+L +E +TR I+ IW
Sbjct: 214 LPPNADFDSVQFSRASQENLNVTISLVRDETPERYKLSKELAEVLDVEEETRSGIVLGIW 273
Query: 373 HYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQXXXXXXXXXXEHKIKLS 432
Y++ LQ + CD L+ FG +++ F I + I + I++
Sbjct: 274 DYIRAMGLQEDEEKRLVRCDDRLRAIFGRDQMFFPQIPESIGPHTSPLDPIKLPYTIRVD 333
Query: 433 GN---SPAGTSCYDMLVDVPFPLEKEMAAFLANMEKN---KEIDACDELICASIKKIHEH 486
P T YD+ V V PL +M A N + ++I D+ + I+ +
Sbjct: 334 EEFHKDPTPT-VYDIQVAVEDPLRSKMLALTQNPQYAAGMRQIAQLDDQVALIIQALTHS 392
Query: 487 RRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFF-----NQPW-- 539
R + +FF S+ P F+ I SQ +DL+ + G+A+R ++ F N W
Sbjct: 393 RAKHSFFTALSKDPATFVRRWINSQRRDLETILGEATRGGGEDASGPEFRRGGSNSVWDT 452
Query: 540 -VEDAVIRYMNRK-SAG 554
V +RYM K AG
Sbjct: 453 AVAHEAVRYMLAKPDAG 469
Score = 151 (58.2 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 167 AARRKKRKLPEKQIPDKVA-AILPE-CALYTQLLEFEARVDSALARKKIDIQESLKNPPR 224
AA R+ RK +K IPD V ++ E Y L + E R+D+A+ RK++DIQ+S+ +
Sbjct: 27 AALRRSRKPTDKNIPDGVEDVVIGEGVQQYKSLRDLEKRLDAAIVRKRLDIQDSISKTVK 86
Query: 225 VQKTLRMYVFNTFANQD-ETSPEKKT-GEAPC---WSLKLIGRILEDGQD 269
+T+R++V NT NQ +T G P + +++ GR+LED D
Sbjct: 87 KYRTMRIWVSNTVENQPWQTGQNGSVPGTTPGSGRYKVRIEGRLLEDVSD 136
>SGD|S000005306 [details] [associations]
symbol:SNF12 "73 kDa subunit of the SWI/SNF chromatin
remodeling complex involved i" species:4932 "Saccharomyces
cerevisiae" [GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0061412 "positive regulation of transcription
from RNA polymerase II promoter in response to amino acid
starvation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003121 SGD:S000005306 EMBL:BK006947
GO:GO:0006351 GO:GO:0016514 SUPFAM:SSF47592 GO:GO:0061412
eggNOG:COG5531 GeneTree:ENSGT00390000017809 HOGENOM:HOG000000860
EMBL:X62430 EMBL:Z71638 PIR:S19063 RefSeq:NP_014420.1
ProteinModelPortal:P53628 DIP:DIP-2443N IntAct:P53628
MINT:MINT-650685 STRING:P53628 PaxDb:P53628 PeptideAtlas:P53628
PRIDE:P53628 EnsemblFungi:YNR023W GeneID:855757 KEGG:sce:YNR023W
CYGD:YNR023w KO:K11775 OMA:TMRIEGR OrthoDB:EOG4MPN03 NextBio:980184
Genevestigator:P53628 GermOnline:YNR023W Uniprot:P53628
Length = 566
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 473 DELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRS 532
D+ I + + +HE +R FF S+ P + +N IAS S LK+++GD N + RR+
Sbjct: 484 DKEITSVLSNLHESNKRYRFFKKISEDPVKALNECIASTSNALKVLSGDEGYNEDMVRRA 543
Query: 533 DFFNQPWVEDAVIR 546
+F+ + +A++R
Sbjct: 544 NFYKE---NEAMLR 554
Score = 90 (36.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 300 SLYPDNHVILWE-SARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLS--PSLMEL 356
S P + W+ +P +G ++KR G + I I PE+ +S P L +
Sbjct: 258 STTPKLESVKWQYDPNNPVDFDGLDIKRVGSENVECTISILRKSSPEEPFMSYSPQLTAI 317
Query: 357 LGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSF 389
+G++ T I +I+ Y+ + +L + ND S+F
Sbjct: 318 IGLKSGTSHDAIFSIYKYIHLNELLT-NDESAF 349
Score = 68 (29.0 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 36/133 (27%), Positives = 59/133 (44%)
Query: 180 IPDKVAAILPECALYTQLLEFEARVDSALARKKIDI-------------QESLK---NPP 223
IPD +A ++PE + QL++ E R+D + + + + QE L N P
Sbjct: 61 IPDHLAELIPELYSFQQLVDSEKRLDHFIHLRNLHMKRMVAQWERSKLSQEFLYPHLNFP 120
Query: 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILE-DGQDPVLAGLMQKSDTL 282
V K LR+++ N NQ EA +L+ + +G+ L +Q +D
Sbjct: 121 NV-KFLRIFISNVSENQPWQMDTNN--EADLMALENATWTMRIEGR---LLDNVQANDPA 174
Query: 283 YPKFSSFFKKITI 295
KFSSF + I +
Sbjct: 175 REKFSSFIESIVV 187
>CGD|CAL0006320 [details] [associations]
symbol:orf19.2265 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0061412 "positive regulation of transcription
from RNA polymerase II promoter in response to amino acid
starvation" evidence=IEA] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 114 (45.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 44/175 (25%), Positives = 76/175 (43%)
Query: 229 LRMYVFNTFANQDETS----------PEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQK 278
LR++++NT NQ P+ E+ W+L++ G+ + D D Q+
Sbjct: 93 LRIFIYNTCENQPWQKQLLQQKGLPVPDPTLAESS-WTLRIEGKFISDIPDE-----QQQ 146
Query: 279 SDTLYPKFSSFFKKITI-YLDQSLYPD-----NHVILWE----SARSPALH---EGFEVK 325
D + KFSSF I++ L YP+ +H+I W +A P +G ++K
Sbjct: 147 IDETF-KFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPPASVSFDGLDIK 205
Query: 326 RKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKL 380
R G + I + + KLS + +G + ++ ++ IW YV K L
Sbjct: 206 RNGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQYVLFKGL 260
Score = 103 (41.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 41/153 (26%), Positives = 71/153 (46%)
Query: 180 IPDKVAAILPECALYTQLLEFEARVDSALARKKID---IQESLKNPPRVQKT---LRMYV 233
IP ++ + Y +L E E ++D +ARK +D IQ+ +P + + LR+++
Sbjct: 38 IPTQLYDKIGNLGEYKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLRIFI 97
Query: 234 FNTFANQDETS----------PEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+NT NQ P+ E+ W+L++ G+ + D D Q+ D +
Sbjct: 98 YNTCENQPWQKQLLQQKGLPVPDPTLAESS-WTLRIEGKFISDIPDE-----QQQIDETF 151
Query: 284 PKFSSFFKKITI-YLDQSLYPD-----NHVILW 310
KFSSF I++ L YP+ +H+I W
Sbjct: 152 -KFSSFLSAISVDLLPNENYPNIQESQSHIIEW 183
Score = 90 (36.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 426 EHKIKLSGNSPAGTSCYDMLVDVPFPL---EKEM-----AAFLANMEK-NKEIDACDELI 476
++++ ++ G D+ V++P L +KE+ AF N+ K + I D+ I
Sbjct: 332 DYEVDTRKSTTLGNVVLDIPVELPLNLLKAQKELLDVNKTAF-ENLAKADSTISQLDQRI 390
Query: 477 CASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFN 536
+I + R F+ S P +FI + SQ++ LK + D + E RR+ +F
Sbjct: 391 SLAIIALQNANSREKFYRELSDDPVKFIENWLESQAETLKALKSDEGYDEEVVRRAKYFE 450
Query: 537 Q 537
+
Sbjct: 451 E 451
>UNIPROTKB|Q59Z35 [details] [associations]
symbol:SNF12 "Putative uncharacterized protein SNF12"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 CGD:CAL0006320
EMBL:AACQ01000095 EMBL:AACQ01000096 SUPFAM:SSF47592 eggNOG:COG5531
KO:K11775 RefSeq:XP_714793.1 RefSeq:XP_714855.1
ProteinModelPortal:Q59Z35 STRING:Q59Z35 GeneID:3643504
GeneID:3643584 KEGG:cal:CaO19.2265 KEGG:cal:CaO19.9805
Uniprot:Q59Z35
Length = 469
Score = 114 (45.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 44/175 (25%), Positives = 76/175 (43%)
Query: 229 LRMYVFNTFANQDETS----------PEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQK 278
LR++++NT NQ P+ E+ W+L++ G+ + D D Q+
Sbjct: 93 LRIFIYNTCENQPWQKQLLQQKGLPVPDPTLAESS-WTLRIEGKFISDIPDE-----QQQ 146
Query: 279 SDTLYPKFSSFFKKITI-YLDQSLYPD-----NHVILWE----SARSPALH---EGFEVK 325
D + KFSSF I++ L YP+ +H+I W +A P +G ++K
Sbjct: 147 IDETF-KFSSFLSAISVDLLPNENYPNIQESQSHIIEWRDDGPNANKPPASVSFDGLDIK 205
Query: 326 RKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKL 380
R G + I + + KLS + +G + ++ ++ IW YV K L
Sbjct: 206 RNGIFNIKSKIALLVKNHSNSLKLSEEMSRFVGKQECSQQELLYIIWQYVLFKGL 260
Score = 103 (41.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 41/153 (26%), Positives = 71/153 (46%)
Query: 180 IPDKVAAILPECALYTQLLEFEARVDSALARKKID---IQESLKNPPRVQKT---LRMYV 233
IP ++ + Y +L E E ++D +ARK +D IQ+ +P + + LR+++
Sbjct: 38 IPTQLYDKIGNLGEYKRLQEAEKKLDLLIARKSLDFQAIQQKSIHPHEYRPSTGVLRIFI 97
Query: 234 FNTFANQDETS----------PEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLY 283
+NT NQ P+ E+ W+L++ G+ + D D Q+ D +
Sbjct: 98 YNTCENQPWQKQLLQQKGLPVPDPTLAESS-WTLRIEGKFISDIPDE-----QQQIDETF 151
Query: 284 PKFSSFFKKITI-YLDQSLYPD-----NHVILW 310
KFSSF I++ L YP+ +H+I W
Sbjct: 152 -KFSSFLSAISVDLLPNENYPNIQESQSHIIEW 183
Score = 90 (36.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 426 EHKIKLSGNSPAGTSCYDMLVDVPFPL---EKEM-----AAFLANMEK-NKEIDACDELI 476
++++ ++ G D+ V++P L +KE+ AF N+ K + I D+ I
Sbjct: 332 DYEVDTRKSTTLGNVVLDIPVELPLNLLKAQKELLDVNKTAF-ENLAKADSTISQLDQRI 390
Query: 477 CASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFN 536
+I + R F+ S P +FI + SQ++ LK + D + E RR+ +F
Sbjct: 391 SLAIIALQNANSREKFYRELSDDPVKFIENWLESQAETLKALKSDEGYDEEVVRRAKYFE 450
Query: 537 Q 537
+
Sbjct: 451 E 451
>UNIPROTKB|F8VW95 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
GO:GO:0071564 GO:GO:0071565 EMBL:AC025154 HGNC:HGNC:11106
ChiTaRS:SMARCD1 IPI:IPI01022482 Ensembl:ENST00000551497
ArrayExpress:F8VW95 Bgee:F8VW95 Uniprot:F8VW95
Length = 113
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 171 KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNP 222
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P
Sbjct: 62 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRP 113
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 137 (53.3 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 348 KLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFA 407
KLSP L E LG+E +RP+ + +W Y+K LQ PND + +CD L+ F + +
Sbjct: 122 KLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMF 181
Query: 408 TISQKIS 414
T+++ ++
Sbjct: 182 TMNKYLT 188
>SGD|S000000648 [details] [associations]
symbol:RSC6 "Component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0016586 "RSC
complex" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000086 "G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0006337
"nucleosome disassembly" evidence=IDA] [GO:0000080 "G1 phase of
mitotic cell cycle" evidence=IGI] [GO:0016584 "nucleosome
positioning" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003121 SGD:S000000648 GO:GO:0000086
EMBL:X59720 EMBL:BK006937 GO:GO:0006351 GO:GO:0006337 GO:GO:0016586
GO:GO:0043044 GO:GO:0016584 GO:GO:0000080 GO:GO:0032968
SUPFAM:SSF47592 EMBL:AY692985 PIR:S19466 RefSeq:NP_009981.1
ProteinModelPortal:P25632 DIP:DIP-4999N IntAct:P25632
MINT:MINT-493435 STRING:P25632 PaxDb:P25632 PeptideAtlas:P25632
EnsemblFungi:YCR052W GeneID:850419 KEGG:sce:YCR052W CYGD:YCR052w
eggNOG:COG5531 GeneTree:ENSGT00390000017809 HOGENOM:HOG000000860
KO:K11760 OMA:LHESANG OrthoDB:EOG4N8VDJ NextBio:965983
Genevestigator:P25632 GermOnline:YCR052W Uniprot:P25632
Length = 483
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 196 QLLEFEARVDSALARKKIDIQESL------KNPPRVQKTLRMYVFNTFANQDETSPEKKT 249
+L+E ++R+D L R+++D +L K+ P ++ LR+YV+NT E+SP +
Sbjct: 35 KLIEMDSRLDLYLTRRRLDTSINLPTNTKTKDHPPNKEMLRIYVYNT----TESSPRSDS 90
Query: 250 GEAP-----CWSLKLIGRILED 266
G W+L++ G++L +
Sbjct: 91 GTPADSGKTTWTLRIEGKLLHE 112
Score = 74 (31.1 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 426 EHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKI-- 483
++ I LS ++ G + D VDV L + N++K +E DA D I K+
Sbjct: 352 DYTIDLSKDTTYGATTLD--VDVSHILHQPQPQ--PNLQKEEETDAEDTAKLREITKLAL 407
Query: 484 --HEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFN 536
+ ++ FF S P E + + S ++ ++ GD N + R SD ++
Sbjct: 408 QLNSSAQKYQFFHELSLHPRETLTHYLWSSKQNELVLQGDQYFNEDAARTSDIYS 462
Score = 66 (28.3 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 320 EGFEVKRKGDKEFTAIIRIEMNYFPE-KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVK 378
+G ++KR+G I I++ K + SP+L L+G++ + + +I+ Y+ +
Sbjct: 204 DGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSPNLATLIGMQTGSVNDAVYSIYKYILIN 263
Query: 379 KL 380
L
Sbjct: 264 NL 265
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 349 LSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAF-GEEKIKFA 407
+SP L + LG +R I IW Y+K LQ+P D CD L+ F G++K+ F
Sbjct: 70 VSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFL 129
Query: 408 TISQKIS 414
IS+ +S
Sbjct: 130 EISKLLS 136
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 343 FPEKSKLSPSLMELLGIEVD-TRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGE 401
F + LSP+L LLG +RP+ + +W Y+ LQ P+D CD P++ F +
Sbjct: 199 FHKPLNLSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFKQ 258
Query: 402 EKIKFATISQKISQ 415
++I T+++ +SQ
Sbjct: 259 DRIHMFTMTKILSQ 272
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 100 (40.3 bits), Expect = 0.00019, P = 0.00019
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 349 LSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAF-GEEKIKFA 407
+S L +G +R + IW Y+K+ LQ+P + +CD L+ F G++ + F
Sbjct: 36 VSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFL 95
Query: 408 TISQKISQ 415
IS+ +SQ
Sbjct: 96 EISKLLSQ 103
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 104 (41.7 bits), Expect = 0.00021, P = 0.00021
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 349 LSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAF-GEEKIKFA 407
+S ++ +++G+ R + + IW Y+K LQ P + +CD L+K F G+E++ F
Sbjct: 74 VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133
Query: 408 TISQKI 413
I++ I
Sbjct: 134 EIAKLI 139
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 113 (44.8 bits), Expect = 0.00053, P = 0.00053
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 325 KRKGDKEFTAIIRIEMNYFPEKSK-------LSPSLMELLGIEVDTRPRIIAAIWHYVKV 377
KRKG E + + + N P+ + LS L + LG E R +++ IW Y+K
Sbjct: 95 KRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 154
Query: 378 KKLQSPNDPSSFMCDPPLQKAFGEEKIKFA 407
LQ+P D +CD ++ FG++ F+
Sbjct: 155 HDLQNPKDRREILCDEKMEPIFGKKMTMFS 184
>UNIPROTKB|G4MMD0 [details] [associations]
symbol:MGG_01988 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:CM001231 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 InterPro:IPR019835 SMART:SM00151 KO:K15223
RefSeq:XP_003708728.1 ProteinModelPortal:G4MMD0
EnsemblFungi:MGG_01988T0 GeneID:2681107 KEGG:mgr:MGG_01988
Uniprot:G4MMD0
Length = 285
Score = 115 (45.5 bits), Expect = 0.00058, P = 0.00058
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 343 FPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEE 402
F + LS SL E+ G +RP+++ +W ++K LQ PND +CD +Q F +
Sbjct: 205 FQKPFHLSASLAEVCGEPTLSRPQVVKKLWEHIKGNNLQDPNDKRQILCDEKMQAVFKQS 264
Query: 403 KIKFATISQKI 413
+ +++ I
Sbjct: 265 SLNMFAMNKLI 275
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 100 (40.3 bits), Expect = 0.00093, P = 0.00093
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 349 LSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAF-GEEKIKFA 407
+SP + +++ + R + + IW Y+K LQ P + +CD L+K F G +++ F
Sbjct: 71 VSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130
Query: 408 TISQKI 413
I++ I
Sbjct: 131 EIAKLI 136
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 561 467 0.00098 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 612 (65 KB)
Total size of DFA: 269 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.41u 0.09s 38.50t Elapsed: 00:00:02
Total cpu time: 38.41u 0.09s 38.50t Elapsed: 00:00:02
Start: Tue May 21 09:59:54 2013 End: Tue May 21 09:59:56 2013