BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008555
(561 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/450 (69%), Positives = 383/450 (85%), Gaps = 3/450 (0%)
Query: 112 TPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARRK 171
+P GG +G SSP+++TPG+ + KR QKPP RPPG+ ++ N+ S +T ELTPAAR+K
Sbjct: 86 SPGIGG-LGPSSPSLTTPGSL-NMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKK 143
Query: 172 KRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRM 231
K+KLPEK + ++VAAILPE ALYTQLLEFE+RVD+AL RKK+DIQE+LKNPP +QKTLR+
Sbjct: 144 KQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRI 203
Query: 232 YVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFK 291
YVFN+FANQ+ T P + P W+LK+IGRILEDG DP G +QK++ L+PKFSSFFK
Sbjct: 204 YVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFK 263
Query: 292 KITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
++T+ LDQ LYP+N +I+WE+ARSPA EGFE+KRKG++EF A IR+EMNY PEK KLS
Sbjct: 264 RVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLST 323
Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
+LM++LGIEV+TRPRIIAAIWHYVK +KLQ+PNDPS F CD LQK FGEEK+KF +SQ
Sbjct: 324 ALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQ 383
Query: 412 KISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
KIS HL PPPPIHLEHKIKLSGN+PA ++CYD+LVDVPFP+++++ LAN EKNKEI+A
Sbjct: 384 KISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEA 443
Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
CDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRNAE+ERR
Sbjct: 444 CDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERR 503
Query: 532 SDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 560
SDFFNQPWVEDAVIRY+NR+ +AG+D GS
Sbjct: 504 SDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/446 (35%), Positives = 244/446 (54%), Gaps = 23/446 (5%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSS-NTNSGSLFKTTELTP 166
P + P GGN V P ++ G S KR + + + N N +
Sbjct: 74 PSMGPPGYGGNPSVR-PGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNA--------- 123
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + +
Sbjct: 124 ----KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQK 179
Query: 227 KTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKF 286
+ LR+++ NTF N ++ E G W L++ GR+LED QK KF
Sbjct: 180 RKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKR-----KF 233
Query: 287 SSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPE 345
SSFFK + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P
Sbjct: 234 SSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPP 293
Query: 346 KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIK 405
+ KL P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++K
Sbjct: 294 QFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMK 353
Query: 406 FATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEK 465
F+ I Q++ L+PP PI + H I + N T+CYD+ V+V L+ +M +FL +
Sbjct: 354 FSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTAS 413
Query: 466 NKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRN 525
+EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N
Sbjct: 414 QQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGN 472
Query: 526 AEKERRSDFFNQPWVEDAVIRYMNRK 551
E+ERR++F+ QPW ++AV RY K
Sbjct: 473 PEEERRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/446 (35%), Positives = 244/446 (54%), Gaps = 23/446 (5%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSS-NTNSGSLFKTTELTP 166
P + P GGN V P ++ G S KR + + + N N +
Sbjct: 74 PSMGPPGYGGNPSVR-PGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNA--------- 123
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + +
Sbjct: 124 ----KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQK 179
Query: 227 KTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKF 286
+ LR+++ NTF N ++ E G W L++ GR+LED QK KF
Sbjct: 180 RKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KF 233
Query: 287 SSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPE 345
SSFFK + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P
Sbjct: 234 SSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPP 293
Query: 346 KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIK 405
+ KL P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++K
Sbjct: 294 QFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMK 353
Query: 406 FATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEK 465
F+ I Q++ L+PP PI + H I + N T+CYD+ V+V L+ +M +FL +
Sbjct: 354 FSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTAS 413
Query: 466 NKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRN 525
+EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D N
Sbjct: 414 QQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGN 472
Query: 526 AEKERRSDFFNQPWVEDAVIRYMNRK 551
E+ERR++F+ QPW ++AV RY K
Sbjct: 473 PEEERRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 245/446 (54%), Gaps = 23/446 (5%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTPGTGGSAKR-ATQKPPSRPPGSSSNTNSGSLFKTTELTP 166
P + P GGN V P ++ G S KR A Q+ + N N +
Sbjct: 74 PSMGPPGYGGNPSVR-PGLAQSGMDQSLKRPAPQQIKQVQQQAVQNRNHNA--------- 123
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
KK+K+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + +
Sbjct: 124 ----KKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQK 179
Query: 227 KTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKF 286
+ LR+++ NTF N ++ E G W L++ GR+LED QK KF
Sbjct: 180 RKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KF 233
Query: 287 SSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPE 345
SSFFK + I LD+ LY PDNH++ W + +GF+VKR GD + + ++Y P
Sbjct: 234 SSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPP 293
Query: 346 KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIK 405
+ KL P L LLGI TRP II A+W Y+K KLQ P++ +CD LQ+ F +++K
Sbjct: 294 QFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMK 353
Query: 406 FATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEK 465
F+ I Q++ L+PP PI + H I + N T+CYD+ +V L+ +M +FL +
Sbjct: 354 FSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTAS 413
Query: 466 NKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRN 525
+EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK V D N
Sbjct: 414 QQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLK-VMTDVVGN 472
Query: 526 AEKERRSDFFNQPWVEDAVIRYMNRK 551
+E+ERR++F+ QPW ++AV RY K
Sbjct: 473 SEEERRAEFYFQPWAQEAVCRYFYSK 498
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 247/437 (56%), Gaps = 25/437 (5%)
Query: 117 GNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARR--KKRK 174
G+ + SPAV PG + +K + PPG S G T PA R K+RK
Sbjct: 47 GSPYMGSPAVR-PGLAPAGMEPARKRAAPPPGQSQAQGQGQPVPTA---PARSRSAKRRK 102
Query: 175 LPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVF 234
+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR+Y+
Sbjct: 103 MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYIS 162
Query: 235 NTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKIT 294
NTF N + E G W L++ G++L+D QK KFSSFFK +
Sbjct: 163 NTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR-----KFSSFFKSLV 209
Query: 295 IYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
I LD+ LY PDNH++ W R+P E GF+VKR GD + + ++Y P + KL P
Sbjct: 210 IELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDP 267
Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
L LLG+ +R I+ A+W YVK +LQ +D D Q+ F ++KF+ I Q
Sbjct: 268 RLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQ 327
Query: 412 KISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
+++ L+PP PI + H I + + T+CYD+ V+V PL+ +M++FL + +EI A
Sbjct: 328 RLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISA 387
Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK V D + N E+ERR
Sbjct: 388 LDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK-VMTDVAGNPEEERR 446
Query: 532 SDFFNQPWVEDAVIRYM 548
++F++QPW ++AV RY
Sbjct: 447 AEFYHQPWSQEAVSRYF 463
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 248/437 (56%), Gaps = 25/437 (5%)
Query: 117 GNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTPAARR--KKRK 174
G+ + SPAV PG + +K + PPG S + G T PA R K+RK
Sbjct: 47 GSPYMGSPAVR-PGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTA---PARSRSAKRRK 102
Query: 175 LPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVF 234
+ +K +P ++ ++PE Y LL FE ++D + RK++DIQE+LK P + ++ LR+Y+
Sbjct: 103 MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYIS 162
Query: 235 NTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKIT 294
NTF N + E G W L++ G++L+D QK KFSSFFK +
Sbjct: 163 NTF-NPAKPDAEDSDGSIASWELRVEGKLLDDPSK-------QKR-----KFSSFFKSLV 209
Query: 295 IYLDQSLY-PDNHVILWESARSPALHE--GFEVKRKGDKEFTAIIRIEMNYFPEKSKLSP 351
I LD+ LY PDNH++ W R+P E GF+VKR GD + + ++Y P + KL P
Sbjct: 210 IELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDP 267
Query: 352 SLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQ 411
L LLG+ +R I+ A+W YVK +LQ +D D Q+ F ++KF+ I Q
Sbjct: 268 RLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQ 327
Query: 412 KISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDA 471
+++ L+PP PI + H I + + T+CYD+ V+V PL+ +M++FL + +EI A
Sbjct: 328 RLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISA 387
Query: 472 CDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERR 531
D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK V D + N E+ERR
Sbjct: 388 LDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK-VMTDVAGNPEEERR 446
Query: 532 SDFFNQPWVEDAVIRYM 548
++F++QPW ++AV RY
Sbjct: 447 AEFYHQPWSQEAVSRYF 463
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/486 (32%), Positives = 252/486 (51%), Gaps = 57/486 (11%)
Query: 107 HPQLQTPNAGGNVGVSSPAVSTP-GTGGSA---KRATQKPPSR---------PPGSSSNT 153
+P L+ P G +GV A P G G A +R P SR PP S
Sbjct: 39 NPALRGPGPSGGMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFG 98
Query: 154 NSGSL-----------FKTTELTPAA-------RR--KKRKLPEKQIPDKVAAILPECAL 193
+ L F+ L P A RR K+RK+ +K +P ++ ++PE
Sbjct: 99 TAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA 158
Query: 194 YTQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTF----ANQDETSPEKKT 249
Y LL FE ++D +ARK+++IQE++K P ++ LR+Y+ NTF A+ D +
Sbjct: 159 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNSGTAGTP 218
Query: 250 GEAPC------WSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLY- 302
G P W L++ G++L+D QK KFSSFFK + I LD+ LY
Sbjct: 219 GGTPAADKVASWELRVEGKLLDDPSK-------QKR-----KFSSFFKSLVIELDKELYG 266
Query: 303 PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVD 362
PDNH++ W + +GF+VKR GD + + +++ P + KL P L LLG+
Sbjct: 267 PDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQ 326
Query: 363 TRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPP 422
TR I+ A+W Y+K +LQ ++ C+ ++ F +++F+ I K++ L P P
Sbjct: 327 TRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDP 386
Query: 423 IHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKK 482
I + H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+
Sbjct: 387 IVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIES 446
Query: 483 IHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVED 542
I++ + +R F L FS P +FI + SQ +DLK++ D N E+ERR+ F++QPW ++
Sbjct: 447 INQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQE 505
Query: 543 AVIRYM 548
AV R++
Sbjct: 506 AVGRHI 511
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 249/485 (51%), Gaps = 57/485 (11%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTP-GTGGSA---KRATQKPPSRPP--GSSSNTNSGSLFKT 161
P L+ P G +GV A P G G A +R P SR P G +GS F T
Sbjct: 40 PALRGPGPSGGMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGT 99
Query: 162 TE-------------------------LTPAARR--KKRKLPEKQIPDKVAAILPECALY 194
PA RR K+RK+ +K +P ++ ++PE Y
Sbjct: 100 AAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAY 159
Query: 195 TQLLEFEARVDSALARKKIDIQESLKNPPRVQKTLRMYVFNTF----ANQDETSPEKKTG 250
LL FE ++D +ARK+++IQE++K P ++ LR+Y+ NTF A+ D G
Sbjct: 160 MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNAGTAGTPG 219
Query: 251 EAPC------WSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLY-P 303
P W L++ G++L+D QK KFSSFFK + I LD+ LY P
Sbjct: 220 GTPAADKVASWELRVEGKLLDDPSK-------QKR-----KFSSFFKSLVIELDKELYGP 267
Query: 304 DNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDT 363
DNH++ W + +GF+VKR GD + + +++ P + KL P L LLG+ T
Sbjct: 268 DNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT 327
Query: 364 RPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPI 423
R I+ A+W Y+K +LQ ++ C+ ++ F +++F+ I K++ L P PI
Sbjct: 328 RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPI 387
Query: 424 HLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKI 483
+ H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I
Sbjct: 388 VINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESI 447
Query: 484 HEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDA 543
++ + +R F L FS P +FI + SQ +DLK++ D N E+ERR+ F++QPW ++A
Sbjct: 448 NQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEA 506
Query: 544 VIRYM 548
V R++
Sbjct: 507 VGRHI 511
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 223/396 (56%), Gaps = 26/396 (6%)
Query: 166 PAARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPP 223
PA RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 224 RVQKTLRMYVFNTF----ANQDETSPEKKTGEAPC------WSLKLIGRILEDGQDPVLA 273
++ LR+Y+ NTF A D G P W L++ G++L+D
Sbjct: 189 TQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSK---- 244
Query: 274 GLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRKGDKEF 332
QK KFSSFFK + I LD+ LY PDNH++ W + +GF+VKR GD
Sbjct: 245 ---QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNV 296
Query: 333 TAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD 392
+ + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++ C+
Sbjct: 297 KCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCN 356
Query: 393 PPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPL 452
++ F +++F+ I K++ L P PI + H I + N T+CYD+ V+V PL
Sbjct: 357 RYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPL 416
Query: 453 EKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQS 512
+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ
Sbjct: 417 KAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQR 476
Query: 513 KDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYM 548
+DLK++ D N E+ERR+ F++QPW ++AV R++
Sbjct: 477 RDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHI 511
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 242/461 (52%), Gaps = 47/461 (10%)
Query: 108 PQLQTPNAGGNVGVSSPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTEL-TP 166
P + P AG VG PA S GT + P PP L + P
Sbjct: 78 PGSRMPMAGLQVG--PPAGSPFGTAAPLR------PGMPPTMMDPFRKRLLVPQAQPPMP 129
Query: 167 AARR--KKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPR 224
A RR K+RK+ +K +P ++ ++PE Y LL FE ++D +ARK+++IQE++K P
Sbjct: 130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLT 189
Query: 225 VQKTLRMYVFNTFANQDETSPEKKTGE----------------APCWSLKLIGRILEDGQ 268
++ LR+Y+ NTF SP K G+ W L++ G++L+D
Sbjct: 190 QKRKLRIYISNTF------SPSKAEGDTAGTTGTPGGTPAGDKVASWELRVEGKLLDDPS 243
Query: 269 DPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLY-PDNHVILWESARSPALHEGFEVKRK 327
QK KFSSFFK + I LD+ LY PDNH++ W + +GF+VKR
Sbjct: 244 K-------QKR-----KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRP 291
Query: 328 GDKEFTAIIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPS 387
GD + + +++ P + KL P L LLG+ TR I+ A+W Y+K +LQ ++
Sbjct: 292 GDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHERE 351
Query: 388 SFMCDPPLQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVD 447
C+ ++ F +++F+ I K++ L P PI + H I + N T+CYD+ V+
Sbjct: 352 YINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVE 411
Query: 448 VPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINAL 507
V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI
Sbjct: 412 VDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEW 471
Query: 508 IASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYM 548
+ SQ +DLK++ D N E+ERR+ F++QPW ++AV R++
Sbjct: 472 LRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHI 511
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 212/383 (55%), Gaps = 23/383 (6%)
Query: 182 DKVAAILPECALYTQLLEFEARVDSALARKKIDIQE-SLKNPPRVQKTLRMYVFNTFANQ 240
+++ + PEC L++QLLEFE ++D+++ ++ IDIQE S +N + +TLR+ ++NT++NQ
Sbjct: 68 EELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQ 127
Query: 241 D-----ETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYP-----KFSSFF 290
+ E P WSL++ G++L++ QD ++ ++ S + KFSSFF
Sbjct: 128 SAYYHLDNKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFF 187
Query: 291 KKITIYLDQSLYPDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLS 350
KK+ I + W+ +++ +GFE+KR G++E I + +++ P+K K+
Sbjct: 188 KKVFIQIGH-----RDTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVL 242
Query: 351 PSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATIS 410
L +LL I DT+PRII A+WHY+K L + CD L+ F E+++F I
Sbjct: 243 GGLSQLLNIHTDTKPRIILALWHYIKSNTLLDA-ETKKITCDENLKNIFSLEELQFNQIP 301
Query: 411 QKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEID 470
Q + +HL PP P+ ++ + LSG++ YD+ V+V P+ F N KEI
Sbjct: 302 QLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNPTMRKEIS 355
Query: 471 ACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNAEKER 530
++ I I+K+++H+R+R F S P F+N A+ KD ++ S E+ER
Sbjct: 356 QLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEER 415
Query: 531 RSDFFNQPWVEDAVIRYMNRKSA 553
+ F+ QP E+ V Y+++++
Sbjct: 416 HASFYYQPMTEELVKNYLSKQTT 438
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 206/395 (52%), Gaps = 18/395 (4%)
Query: 167 AARRKKRKLPEKQIPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESLKNPPRVQ 226
A +K ++ E++IPD + +PE Y L + E ++DS + RK+ D+Q+SL
Sbjct: 20 AELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKT 79
Query: 227 KTLRMYVFNTFANQDE----TSPEKKTGEA-----PCWSLKLIGRILEDGQDPVLAGLMQ 277
+ LRMY+ +T ANQ + E +G+ P W+L + GR+L + D
Sbjct: 80 RILRMYIHSTVANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDED-----D 134
Query: 278 KSDTLYPKFSSFFKKITIYLDQS--LYPDNHVILWESA-RSPALHEGFEVKRKGDKEFTA 334
K+ L P F++FF+KI I + +S LYP + + W + G V RKGD+
Sbjct: 135 KAFELAP-FTNFFRKIAIQILRSDDLYPSGNYVEWNKLPDNSNTSNGITVTRKGDQSVDV 193
Query: 335 IIRIEMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPP 394
I + PE+ KLS + +LGI TRP I++ +W Y+K +LQ + CD
Sbjct: 194 KIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKA 253
Query: 395 LQKAFGEEKIKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFPLEK 454
L+ F +++ F I + +++ L P PI + + I +S ++ + +D+ ++ P
Sbjct: 254 LRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHS 313
Query: 455 EMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKD 514
++ +FLA M +I + D+ + I+ I + + F FS+SP EFIN I SQS+D
Sbjct: 314 QIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRD 373
Query: 515 LKLVAGDASRNAEKERRSDFFNQPWVEDAVIRYMN 549
L++V + N ++R +D++ QPWV ++ Y+N
Sbjct: 374 LEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408
>sp|P53628|SNF12_YEAST Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1
Length = 566
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 125/289 (43%), Gaps = 65/289 (22%)
Query: 315 SPALHEGFEVKRKGDKEFTAIIRIEMNYFPEKSKLS--PSLMELLGIEVDTRPRIIAAIW 372
+P +G ++KR G + I I PE+ +S P L ++G++ T I +I+
Sbjct: 274 NPVDFDGLDIKRVGSENVECTISILRKSSPEEPFMSYSPQLTAIIGLKSGTSHDAIFSIY 333
Query: 373 HYVKVKKLQSPNDPSSF------------------MCD-------------------PPL 395
Y+ + +L + ND S+F M D P
Sbjct: 334 KYIHLNELLT-NDESAFENLMGNRNNHNSNTSTSKMLDAASSQVSIVKLDTQLITLLPSS 392
Query: 396 QKAFGEEKIKFATISQKI-SQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDVPFP--- 451
K + +K + I S HL+P PI +++ +++ S G ++++D+ P
Sbjct: 393 LKESSPDTMKLTDLLSLINSTHLLPLQPIEIDYTVRVDKASTYG----ELVLDIEVPDVN 448
Query: 452 ------LEKEMAAFLANMEKN-KEIDAC-------DELICASIKKIHEHRRRRAFFLGFS 497
++E A + +N +E++ D+ I + + +HE +R FF S
Sbjct: 449 ALKFNNTQRESQIGAAELNENARELEQIKPKIALQDKEITSVLSNLHESNKRYRFFKKIS 508
Query: 498 QSPGEFINALIASQSKDLKLVAGDASRNAEKERRSDFFNQPWVEDAVIR 546
+ P + +N IAS S LK+++GD N + RR++F+ + +A++R
Sbjct: 509 EDPVKALNECIASTSNALKVLSGDEGYNEDMVRRANFYKE---NEAMLR 554
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 31/137 (22%)
Query: 180 IPDKVAAILPECALYTQLLEFEARVDSALARKKIDI-------------QESLK---NPP 223
IPD +A ++PE + QL++ E R+D + + + + QE L N P
Sbjct: 61 IPDHLAELIPELYSFQQLVDSEKRLDHFIHLRNLHMKRMVAQWERSKLSQEFLYPHLNFP 120
Query: 224 RVQKTLRMYVFNTFANQD---ETSPEKKTG--EAPCWSLKLIGRILEDGQDPVLAGLMQK 278
V K LR+++ N NQ +T+ E E W++++ GR+L++ +Q
Sbjct: 121 NV-KFLRIFISNVSENQPWQMDTNNEADLMALENATWTMRIEGRLLDN---------VQA 170
Query: 279 SDTLYPKFSSFFKKITI 295
+D KFSSF + I +
Sbjct: 171 NDPAREKFSSFIESIVV 187
>sp|P25632|RSC6_YEAST Chromatin structure-remodeling complex protein RSC6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC6 PE=1 SV=1
Length = 483
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/451 (21%), Positives = 176/451 (39%), Gaps = 106/451 (23%)
Query: 180 IPDKVAAILPECALYTQLLEFEARVDSALARKKIDIQESL------KNPPRVQKTLRMYV 233
+PD + L + +L+E ++R+D L R+++D +L K+ P ++ LR+YV
Sbjct: 22 LPDDKVSNLADLK---KLIEMDSRLDLYLTRRRLDTSINLPTNTKTKDHPPNKEMLRIYV 78
Query: 234 FNTFANQDETSPEKKTGE-----APCWSLKLIGRILE---DGQDPV---LAGLMQKSDTL 282
+NT E+SP +G W+L++ G++L +G+ P L G+ L
Sbjct: 79 YNTT----ESSPRSDSGTPADSGKTTWTLRIEGKLLHESANGKHPFSEFLEGVAVDFKRL 134
Query: 283 YP--------KFSSFFKKITI----YLDQ-SLYPDNH------------------VILWE 311
P + SS + + Y DQ S DN + W
Sbjct: 135 KPLGMGKKRKRDSSLSLPLNLQQPEYNDQDSTMGDNDNGEDEDSAEAESREEIVDALEWN 194
Query: 312 SARSPALH-EGFEVKRKGDKEFTAIIRIEMNYFPE-KSKLSPSLMELLGIEVDTRPRIIA 369
+ + +G ++KR+G I I++ K + SP+L L+G++ + +
Sbjct: 195 YDENNVVEFDGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSPNLATLIGMQTGSVNDAVY 254
Query: 370 AIWHYVKVKKL------------------------------------QSPNDP---SSFM 390
+I+ Y+ + L +P D
Sbjct: 255 SIYKYILINNLFVTEQTEAQDGSNDAEDSSNENNNKNGAGDDDGVEGSTPKDKPELGEVK 314
Query: 391 CDPPLQKAFGEEK--IKFATISQKISQHLIPPPPIHLEHKIKLSGNSPAGTSCYDMLVDV 448
D LQK + + Q +++ + P PPI L++ I LS ++ G + D VDV
Sbjct: 315 LDSLLQKVLDTNAAHLPLMNVVQTVNKLVSPLPPIILDYTIDLSKDTTYGATTLD--VDV 372
Query: 449 PFPLEKEMAAFLANMEKNKEIDACDELICASIKKI----HEHRRRRAFFLGFSQSPGEFI 504
L + N++K +E DA D I K+ + ++ FF S P E +
Sbjct: 373 SHILHQPQPQ--PNLQKEEETDAEDTAKLREITKLALQLNSSAQKYQFFHELSLHPRETL 430
Query: 505 NALIASQSKDLKLVAGDASRNAEKERRSDFF 535
+ S ++ ++ GD N + R SD +
Sbjct: 431 THYLWSSKQNELVLQGDQYFNEDAARTSDIY 461
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 348 KLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFA 407
KLSP L E LG+E +RP+ + +W Y+K LQ PND + +CD L+ F + +
Sbjct: 122 KLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMF 181
Query: 408 TISQKISQHLIPPPPIHL 425
T+++ ++ + P L
Sbjct: 182 TMNKYLTNLMTKIPDDQL 199
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 346 KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIK 405
K LS SL LLG TR ++ +W Y+K LQ+PN+ +CD L+ G+
Sbjct: 123 KVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNM 182
Query: 406 FATISQKISQHLIPPPPI 423
F + + ++ H+ P I
Sbjct: 183 FE-MHKILASHMTEPKKI 199
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 346 KSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIK 405
K LS L + LG E R +++ IW Y+K LQ+P D +CD ++ FG +K+
Sbjct: 123 KVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMT 181
Query: 406 FATISQKISQHLIPPPPI 423
++++ +++HL P I
Sbjct: 182 MFSMNKLLTKHLFNPDEI 199
>sp|O43493|TGON2_HUMAN Trans-Golgi network integral membrane protein 2 OS=Homo sapiens
GN=TGOLN2 PE=1 SV=2
Length = 480
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 65 AHAQAQAHAAHAQFQAHVQSQGHSQSQSQSQSQSQSQSQSQSHPQLQTP-NAGGNVGVS- 122
A A+ Q +++ + A ++Q S S+S S++Q+ S S+SHP+LQTP ++ G G
Sbjct: 86 AEAKTQKDSSN-KSGAEAKTQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGKSGAEA 144
Query: 123 -SPAVSTPGTGGSAKRATQKPPSRPPGSSSNTNSGSLFKTTELTP 166
+P S +G AK TQK S + SGS +TT+ P
Sbjct: 145 QTPEDSPNRSGAEAK--TQK--------DSPSKSGSEAQTTKDVP 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,792,079
Number of Sequences: 539616
Number of extensions: 9022734
Number of successful extensions: 36416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 29644
Number of HSP's gapped (non-prelim): 4204
length of query: 561
length of database: 191,569,459
effective HSP length: 123
effective length of query: 438
effective length of database: 125,196,691
effective search space: 54836150658
effective search space used: 54836150658
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)