Query 008555
Match_columns 561
No_of_seqs 215 out of 624
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uhr_A SWI/SNF related, matrix 99.9 6.7E-29 2.3E-33 214.5 5.4 88 339-426 4-91 (93)
2 1v31_A Hypothetical protein RA 99.9 3.3E-28 1.1E-32 210.1 7.0 87 340-426 5-91 (93)
3 1v32_A AT5G08430, hypothetical 99.9 5.2E-22 1.8E-26 173.7 7.9 73 348-420 15-93 (101)
4 3dac_M MDM4 protein; MDMX, MDM 96.4 0.0037 1.3E-07 56.3 5.2 75 347-421 25-108 (130)
5 1z1m_A Ubiquitin-protein ligas 95.7 0.012 4E-07 52.5 5.1 75 346-420 27-107 (119)
6 2z5s_M MDM4 protein, zebrafish 95.6 0.015 5.2E-07 52.7 5.7 76 346-421 23-107 (140)
7 1ycq_A MDM2, MDM2; anti-oncoge 95.5 0.023 7.9E-07 49.8 6.4 73 346-418 11-92 (107)
8 3fea_A MDM4 protein; HDMX, HDM 95.4 0.013 4.4E-07 50.8 4.2 75 346-420 15-98 (100)
9 2axi_A Ubiquitin-protein ligas 94.1 0.041 1.4E-06 48.7 4.1 73 346-418 11-92 (115)
10 3qrl_A Transcription initiatio 74.1 7.4 0.00025 35.7 7.0 91 224-343 7-98 (140)
11 3iot_A Maltose-binding protein 61.9 5.6 0.00019 41.2 4.0 7 76-82 378-384 (449)
12 3rls_A YAF9, protein AF-9 homo 52.3 54 0.0018 31.0 8.6 88 227-343 6-95 (175)
13 2kwl_A ACP, acyl carrier prote 31.4 36 0.0012 26.8 3.3 58 358-418 1-58 (84)
14 4dnn_A Protein quaking, MQKI, 26.0 63 0.0021 25.1 3.6 40 179-218 2-48 (56)
15 2l5g_B Putative uncharacterize 22.7 1.4E+02 0.0047 22.0 4.6 34 465-498 7-40 (42)
16 3twe_A Alpha4H; unknown functi 21.1 1E+02 0.0034 20.1 3.2 20 192-213 5-24 (27)
No 1
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=6.7e-29 Score=214.50 Aligned_cols=88 Identities=40% Similarity=0.727 Sum_probs=86.2
Q ss_pred eecccCccccCCHHHHhhhCCCccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCC
Q 008555 339 EMNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLI 418 (561)
Q Consensus 339 ~~~~~Per~kLSpeLa~~LG~~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~ 418 (561)
+++|+|++|+||++||+|||..++||++|+++||+|||.||||||+||+.|+||++|++|||+++|+|++|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1uhr_A 4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM 83 (93)
T ss_dssp CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred ccccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceee
Q 008555 419 PPPPIHLE 426 (561)
Q Consensus 419 P~~PI~L~ 426 (561)
|++||+|+
T Consensus 84 p~~PI~i~ 91 (93)
T 1uhr_A 84 PPEPSGPS 91 (93)
T ss_dssp CSSCCCSS
T ss_pred CCCCeeCC
Confidence 99999875
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.94 E-value=3.3e-28 Score=210.12 Aligned_cols=87 Identities=68% Similarity=1.083 Sum_probs=84.9
Q ss_pred ecccCccccCCHHHHhhhCCCccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCCC
Q 008555 340 MNYFPEKSKLSPSLMELLGIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIP 419 (561)
Q Consensus 340 ~~~~Per~kLSpeLa~~LG~~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~P 419 (561)
++|+|++|+||++||+|||..++||++|+++||+|||.||||||+||+.|+||++|++|||+++|.|++|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceee
Q 008555 420 PPPIHLE 426 (561)
Q Consensus 420 ~~PI~L~ 426 (561)
++||+|+
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9999875
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.85 E-value=5.2e-22 Score=173.74 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=70.4
Q ss_pred cCCHHHHhhh---CC---CccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCCCC
Q 008555 348 KLSPSLMELL---GI---EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLIPP 420 (561)
Q Consensus 348 kLSpeLa~~L---G~---~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~P~ 420 (561)
.+|++|++|| |. .++||++|+++||+|||+||||||+||+.|+||++|+.|||+++|.|++|+++|.+||.+.
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 7999999999 88 5799999999999999999999999999999999999999999999999999999999864
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.36 E-value=0.0037 Score=56.34 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=64.4
Q ss_pred ccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceec-ChhhhhhhCcCccchhh---HHHHHHccC
Q 008555 347 SKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMC-DPPLQKAFGEEKIKFAT---ISQKISQHL 417 (561)
Q Consensus 347 ~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~c-De~Lk~LFg~d~i~f~e---L~~lL~~HL 417 (561)
++--++|-.|| |. +.-|+.+|+.-|=+||-.+.|.|+.+..+|.| ++.|.++||+++|.+.+ |.++|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 55667777776 44 46799999999999999999999999999999 46788999999999988 999999999
Q ss_pred CCCC
Q 008555 418 IPPP 421 (561)
Q Consensus 418 ~P~~ 421 (561)
.+.-
T Consensus 105 v~~~ 108 (130)
T 3dac_M 105 VILN 108 (130)
T ss_dssp EEC-
T ss_pred eccc
Confidence 7654
No 5
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=95.69 E-value=0.012 Score=52.47 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=58.8
Q ss_pred cccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceecC-hhhhhhhCcCccchhhHHHHHHccCCC
Q 008555 346 KSKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD-PPLQKAFGEEKIKFATISQKISQHLIP 419 (561)
Q Consensus 346 r~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~LFg~d~i~f~eL~~lL~~HL~P 419 (561)
.++-.++|..|| |. ..-|+-+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+|||++.|.+.+...+..-|...
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 106 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 106 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCS
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455666666665 44 467899999999999999999999999999995 566999999999877655555544443
Q ss_pred C
Q 008555 420 P 420 (561)
Q Consensus 420 ~ 420 (561)
+
T Consensus 107 L 107 (119)
T 1z1m_A 107 L 107 (119)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.62 E-value=0.015 Score=52.71 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=62.9
Q ss_pred cccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceecC-hhhhhhhCcCccchhh---HHHHHHcc
Q 008555 346 KSKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD-PPLQKAFGEEKIKFAT---ISQKISQH 416 (561)
Q Consensus 346 r~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~LFg~d~i~f~e---L~~lL~~H 416 (561)
.++--++|..|| |. ..-|+-+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+|||++.|.+.+ |.++|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 677788888887 54 467999999999999999999999999999995 6679999999988765 55777777
Q ss_pred CCCCC
Q 008555 417 LIPPP 421 (561)
Q Consensus 417 L~P~~ 421 (561)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 65543
No 7
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.55 E-value=0.023 Score=49.76 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=59.5
Q ss_pred cccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceecC-hhhhhhhCcCccchhhHH---HHHHcc
Q 008555 346 KSKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD-PPLQKAFGEEKIKFATIS---QKISQH 416 (561)
Q Consensus 346 r~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~LFg~d~i~f~eL~---~lL~~H 416 (561)
.++-.+.|..+| |. ..-|+.+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.+.. ++|.+.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 456677777776 43 467999999999999999999999999999995 566999999999877655 556655
Q ss_pred CC
Q 008555 417 LI 418 (561)
Q Consensus 417 L~ 418 (561)
|.
T Consensus 91 Lv 92 (107)
T 1ycq_A 91 LV 92 (107)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 8
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.38 E-value=0.013 Score=50.83 Aligned_cols=75 Identities=17% Similarity=0.352 Sum_probs=62.9
Q ss_pred cccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceecC-hhhhhhhCcCccchh---hHHHHHHcc
Q 008555 346 KSKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD-PPLQKAFGEEKIKFA---TISQKISQH 416 (561)
Q Consensus 346 r~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~LFg~d~i~f~---eL~~lL~~H 416 (561)
.++--++|-.|| |. +.-|+.+|+.-+=+||-.+.|-|+.+..+|.|. +.|-++||++++.+. -|.++|.+|
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~n 94 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKN 94 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhh
Confidence 356667777776 44 468999999999999999999999999999994 678899999998876 788999998
Q ss_pred CCCC
Q 008555 417 LIPP 420 (561)
Q Consensus 417 L~P~ 420 (561)
|...
T Consensus 95 Lv~~ 98 (100)
T 3fea_A 95 LVTL 98 (100)
T ss_dssp EEC-
T ss_pred ceec
Confidence 8653
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=94.07 E-value=0.041 Score=48.67 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=58.2
Q ss_pred cccCCHHHHhhh---CC--CccCHHHHHHHHHHHHHhcCCCCCCCCCceecC-hhhhhhhCcCccchhh---HHHHHHcc
Q 008555 346 KSKLSPSLMELL---GI--EVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCD-PPLQKAFGEEKIKFAT---ISQKISQH 416 (561)
Q Consensus 346 r~kLSpeLa~~L---G~--~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cD-e~Lk~LFg~d~i~f~e---L~~lL~~H 416 (561)
.++-.+.|..|| |. ..-|+-+|+.-+=+||-.+.|.|+.+..+|.|. +.|-+|||++.|.+.+ +.++|.+.
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 456667777776 43 467889999999999999999999999999995 5669999999988765 45555555
Q ss_pred CC
Q 008555 417 LI 418 (561)
Q Consensus 417 L~ 418 (561)
|.
T Consensus 91 Lv 92 (115)
T 2axi_A 91 LV 92 (115)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 10
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=74.13 E-value=7.4 Score=35.66 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=54.9
Q ss_pred CCceeEEEEEEEeecCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCchhhcccCCCCCCCccc-ccccceeeEeeCCCCC
Q 008555 224 RVQKTLRMYVFNTFANQDETSPEKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKF-SSFFKKITIYLDQSLY 302 (561)
Q Consensus 224 k~~rtLRIfIsNT~enQpwq~~~~~~~~~psWtLrIEGRLLdd~~~~~~~~~~~~~~~~~~KF-SSFfk~I~VelD~~ly 302 (561)
.++|++||......-+.+- ...+..-=.|++.| .|++.+.++ . +.||++++..|.++--
T Consensus 7 ~vkrtvr~~T~Q~~~~~~~---~~eg~~~h~WtieV--~vr~~~g~e---------------i~~~~i~kV~f~LH~sF~ 66 (140)
T 3qrl_A 7 TVKRTIRIKTQQHILPEVP---PVENFPVRQWSIEI--VLLDDEGKE---------------IPATIFDKVIYHLHPTFA 66 (140)
T ss_dssp EEEEEEEEEEEEEECTTSC---CBTTBCCEEEEEEE--EEECTTSCE---------------ECCTTEEEEEEECCTTSS
T ss_pred ceEEEEEEEEeeeeCCCCC---CCCCCcccEeeEEE--EEeCCCCCc---------------CchheEEEEEEEeCCCCC
Confidence 4789999998766443221 01111123798433 233333211 3 4799999999998632
Q ss_pred CCCceEEecCCCCCCCCcceEEEecCCCcccEEEEEeeccc
Q 008555 303 PDNHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYF 343 (561)
Q Consensus 303 Pd~~~VEW~k~~s~~efDGfeIKR~Gden~~itI~L~~~~~ 343 (561)
+..-+|+ .+ =|+|.+.|=-++.+.|.|++...
T Consensus 67 np~r~v~--~p-------PF~v~e~GWGeF~i~I~i~f~~~ 98 (140)
T 3qrl_A 67 NPNRTFT--DP-------PFRIEEQGWGGFPLDISVFLLEK 98 (140)
T ss_dssp SCEEEEC--ST-------TCCEEEEESSCCCEEEEEEEGGG
T ss_pred CCeEEEc--CC-------CcEEEEEEeeeEEEEEEEEEecC
Confidence 3222332 22 38899999888888888876543
No 11
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=61.91 E-value=5.6 Score=41.21 Aligned_cols=7 Identities=0% Similarity=-0.116 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 008555 76 AQFQAHV 82 (561)
Q Consensus 76 ~~~~~~~ 82 (561)
.++|.+.
T Consensus 378 ~~~~~~~ 384 (449)
T 3iot_A 378 MKAFESL 384 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 12
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=52.32 E-value=54 Score=31.01 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=55.4
Q ss_pred eeEEEEEEEeecCCCCCCC-CCCCCCCCceEEEEEEEEcCCCCCchhhcccCCCCCCCcccccccceeeEeeCCCCCCC-
Q 008555 227 KTLRMYVFNTFANQDETSP-EKKTGEAPCWSLKLIGRILEDGQDPVLAGLMQKSDTLYPKFSSFFKKITIYLDQSLYPD- 304 (561)
Q Consensus 227 rtLRIfIsNT~enQpwq~~-~~~~~~~psWtLrIEGRLLdd~~~~~~~~~~~~~~~~~~KFSSFfk~I~VelD~~lyPd- 304 (561)
=.-+|.|-|++.-=+.... .......-.||+.|-| .. + ...|.||++++..|.++ |+.
T Consensus 6 i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~----~~-~--------------edis~~v~KV~F~LHpS-F~np 65 (175)
T 3rls_A 6 VSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRG----PQ-N--------------EDISYFIKKVVFKLHDT-YPNP 65 (175)
T ss_dssp EEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEEC----GG-G--------------CCCTTTEEEEEEECCTT-SSSC
T ss_pred EEeCEEEcceeEECCccccCCCCCCCcEEEEEEEEC----CC-C--------------CChhheEEEEEEEcCCC-CCCC
Confidence 3557778787653221110 1112334579997755 11 1 12578999999999976 443
Q ss_pred CceEEecCCCCCCCCcceEEEecCCCcccEEEEEeeccc
Q 008555 305 NHVILWESARSPALHEGFEVKRKGDKEFTAIIRIEMNYF 343 (561)
Q Consensus 305 ~~~VEW~k~~s~~efDGfeIKR~Gden~~itI~L~~~~~ 343 (561)
..+| +.+ =|+|.+.|=-++.+.|.|++...
T Consensus 66 ~Rvv--~~P-------PFevtE~GWGeF~i~I~i~F~~~ 95 (175)
T 3rls_A 66 VRSI--EAP-------PFELTETGWGEFDINIKVYFVEE 95 (175)
T ss_dssp EEEE--CSS-------SEEEEEEESSCCEEEEEEEECGG
T ss_pred cEEE--eCC-------CCEEEEeEEeeEEEEEEEEEeCC
Confidence 2233 232 39999999999999999986553
No 13
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=31.39 E-value=36 Score=26.78 Aligned_cols=58 Identities=5% Similarity=0.093 Sum_probs=46.1
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCCCCCCceecChhhhhhhCcCccchhhHHHHHHccCC
Q 008555 358 GIEVDTRPRIIAAIWHYVKVKKLQSPNDPSSFMCDPPLQKAFGEEKIKFATISQKISQHLI 418 (561)
Q Consensus 358 G~~e~TR~eiv~~LW~YIK~n~Lqdp~dkr~I~cDe~Lk~LFg~d~i~f~eL~~lL~~HL~ 418 (561)
|...+++.++...|.+.|...-=.+ ...|..|..|..-+|-|++.+.+|...|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 5667899999999998887742122 346888999977899999999999999988764
No 14
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=25.99 E-value=63 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCchHHHhhccchHHHHHH-------HHHHHHHHHHHHHhhhhHHHH
Q 008555 179 QIPDKVAAILPECALYTQL-------LEFEARVDSALARKKIDIQES 218 (561)
Q Consensus 179 ~iP~~v~~lvPes~~Y~~L-------~e~ErrLD~~I~RKrlDiqes 218 (561)
.+|+++.+++-|-.....+ .-+||-||.=|.|-|.++-..
T Consensus 2 s~~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq~ 48 (56)
T 4dnn_A 2 STPDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYND 48 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888765544444 448999999999999998753
No 15
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.65 E-value=1.4e+02 Score=22.02 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008555 465 KNKEIDACDELICASIKKIHEHRRRRAFFLGFSQ 498 (561)
Q Consensus 465 ~~keI~~LDekIa~~i~~I~~~k~rr~F~~~fSe 498 (561)
..+.|...|..|+..-++|++.+.|-.=+.+-|.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467888888888888888888777665555443
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.10 E-value=1e+02 Score=20.13 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008555 192 ALYTQLLEFEARVDSALARKKI 213 (561)
Q Consensus 192 ~~Y~~L~e~ErrLD~~I~RKrl 213 (561)
++|+.|.|+..||-.+ ||+|
T Consensus 5 elykeledlqerlrkl--rkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKL--RKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHh
Confidence 6899999999888654 5544
Done!