Query 008556
Match_columns 561
No_of_seqs 402 out of 2366
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 6.5E-55 2.2E-59 468.7 35.9 315 244-558 91-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 4.8E-55 1.6E-59 469.5 27.5 311 245-558 77-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 6.6E-42 2.3E-46 382.9 1.3 252 307-558 357-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 2.5E-36 8.4E-41 302.6 16.3 209 245-453 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 9E-32 3.1E-36 261.6 20.3 222 319-550 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 1.3E-31 4.4E-36 260.2 6.2 217 317-545 25-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 1.3E-22 4.3E-27 191.8 15.4 180 308-550 10-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 3.5E-23 1.2E-27 194.3 10.1 171 306-548 11-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 2.8E-21 9.6E-26 176.6 14.2 155 344-552 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 1E-19 3.6E-24 168.7 -5.9 143 322-552 3-145 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 2.4E-16 8.4E-21 164.0 9.8 85 309-393 250-338 (339)
12 3n0r_A Response regulator; sig 99.6 2.9E-15 1E-19 152.2 7.3 143 317-549 18-160 (286)
13 3t72_q RNA polymerase sigma fa 99.5 2.4E-14 8.1E-19 124.3 10.4 80 480-559 3-82 (99)
14 1tty_A Sigma-A, RNA polymerase 99.3 1.5E-12 5.3E-17 109.5 7.3 72 488-559 10-81 (87)
15 1ku3_A Sigma factor SIGA; heli 99.3 8.4E-13 2.9E-17 107.2 3.8 68 490-557 4-72 (73)
16 3hug_A RNA polymerase sigma fa 99.3 1.4E-11 4.9E-16 104.3 10.8 75 474-552 15-89 (92)
17 2p7v_B Sigma-70, RNA polymeras 99.3 1.8E-12 6.3E-17 103.8 4.0 66 493-558 2-67 (68)
18 2o8x_A Probable RNA polymerase 99.0 6.8E-10 2.3E-14 88.2 7.1 64 486-553 5-68 (70)
19 2o7g_A Probable RNA polymerase 98.9 2.1E-09 7.2E-14 93.3 8.3 82 310-394 13-95 (112)
20 1h3l_A RNA polymerase sigma fa 98.8 4.1E-09 1.4E-13 87.3 6.6 75 317-393 9-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 1.3E-08 4.6E-13 89.8 10.2 69 481-553 9-78 (113)
22 3clo_A Transcriptional regulat 98.7 1.4E-11 4.7E-16 123.1 -15.4 153 310-547 86-243 (258)
23 1s7o_A Hypothetical UPF0122 pr 98.7 2.5E-08 8.7E-13 88.2 7.3 63 487-553 12-75 (113)
24 2rnj_A Response regulator prot 98.5 3.8E-08 1.3E-12 83.0 3.1 59 484-547 17-75 (91)
25 1x3u_A Transcriptional regulat 98.5 1.7E-07 5.9E-12 76.1 6.3 54 488-546 8-61 (79)
26 1jhg_A Trp operon repressor; c 98.5 1.1E-07 3.6E-12 82.6 5.0 63 486-549 24-90 (101)
27 3c57_A Two component transcrip 98.5 1.9E-07 6.5E-12 79.6 6.4 59 486-549 17-75 (95)
28 1je8_A Nitrate/nitrite respons 98.4 2.9E-07 1E-11 76.3 4.7 55 489-548 14-68 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.4E-06 4.8E-11 69.5 5.2 53 490-547 5-57 (74)
30 3ulq_B Transcriptional regulat 98.0 9.7E-06 3.3E-10 68.6 6.4 49 492-545 25-73 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 7.6E-06 2.6E-10 63.1 4.4 43 499-546 1-43 (61)
32 1p4w_A RCSB; solution structur 97.9 1.9E-05 6.4E-10 68.1 6.1 47 495-546 33-79 (99)
33 2q0o_A Probable transcriptiona 97.5 0.00017 5.8E-09 70.4 7.1 46 496-546 175-220 (236)
34 1l3l_A Transcriptional activat 97.4 0.00017 5.9E-09 70.3 6.8 45 496-545 173-217 (234)
35 3szt_A QCSR, quorum-sensing co 97.3 0.0003 1E-08 69.0 6.3 46 495-545 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.2 0.00043 1.5E-08 69.3 6.3 46 496-546 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.0013 4.3E-08 47.3 5.2 40 496-539 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.5 0.0055 1.9E-07 53.0 7.1 46 496-545 18-63 (101)
39 1yio_A Response regulatory pro 96.4 0.0065 2.2E-07 56.5 7.8 51 490-545 136-186 (208)
40 2x48_A CAG38821; archeal virus 96.3 0.0024 8.2E-08 47.9 3.2 39 497-540 17-55 (55)
41 1a04_A Nitrate/nitrite respons 96.1 0.0095 3.2E-07 55.8 7.0 46 495-545 153-198 (215)
42 3c3w_A Two component transcrip 95.8 0.012 4.3E-07 55.9 6.4 46 495-545 148-193 (225)
43 3klo_A Transcriptional regulat 95.1 0.02 6.8E-07 54.3 5.0 47 494-545 157-203 (225)
44 3p7n_A Sensor histidine kinase 94.8 0.075 2.6E-06 50.9 8.4 55 486-545 188-242 (258)
45 3iyd_F RNA polymerase sigma fa 94.3 0.011 3.9E-07 65.9 1.2 33 245-277 94-126 (613)
46 1qgp_A Protein (double strande 93.4 0.092 3.1E-06 42.8 4.9 44 499-546 14-57 (77)
47 1p2f_A Response regulator; DRR 93.3 0.098 3.3E-06 49.0 5.7 50 496-546 145-197 (220)
48 1jko_C HIN recombinase, DNA-in 93.2 0.043 1.5E-06 39.5 2.5 33 502-539 12-44 (52)
49 2oqr_A Sensory transduction pr 92.9 0.11 3.7E-06 48.9 5.4 50 496-546 156-210 (230)
50 2gwr_A DNA-binding response re 92.9 0.15 5E-06 48.6 6.3 50 496-546 153-207 (238)
51 1qbj_A Protein (double-strande 92.8 0.16 5.6E-06 41.8 5.6 43 500-546 11-53 (81)
52 1kgs_A DRRD, DNA binding respo 91.7 0.13 4.5E-06 48.0 4.3 50 496-546 151-205 (225)
53 3ugo_A RNA polymerase sigma fa 91.5 0.035 1.2E-06 54.9 0.0 51 490-545 192-244 (245)
54 1ys7_A Transcriptional regulat 91.3 0.13 4.3E-06 48.4 3.7 50 496-546 159-213 (233)
55 1u78_A TC3 transposase, transp 91.0 0.27 9.2E-06 42.9 5.3 40 496-539 6-45 (141)
56 3r0j_A Possible two component 90.6 0.38 1.3E-05 46.1 6.4 50 496-546 176-230 (250)
57 3q9s_A DNA-binding response re 90.6 0.22 7.4E-06 48.3 4.7 50 496-546 182-236 (249)
58 3kor_A Possible Trp repressor; 90.5 0.24 8E-06 43.9 4.3 35 495-535 60-94 (119)
59 1pdn_C Protein (PRD paired); p 90.5 0.42 1.4E-05 40.5 6.0 41 496-540 17-57 (128)
60 1zx4_A P1 PARB, plasmid partit 90.4 0.24 8.1E-06 47.5 4.7 35 502-541 15-49 (192)
61 2hqr_A Putative transcriptiona 89.5 0.11 3.8E-06 48.6 1.6 50 496-546 143-197 (223)
62 2d1h_A ST1889, 109AA long hypo 89.0 0.77 2.6E-05 37.8 6.3 42 494-537 16-57 (109)
63 1k78_A Paired box protein PAX5 88.7 0.65 2.2E-05 41.3 6.0 42 496-541 32-73 (149)
64 3k2z_A LEXA repressor; winged 88.4 0.48 1.6E-05 44.7 5.2 42 496-537 2-45 (196)
65 2heo_A Z-DNA binding protein 1 88.3 0.52 1.8E-05 37.0 4.5 43 498-546 9-51 (67)
66 1oyi_A Double-stranded RNA-bin 88.2 0.37 1.3E-05 40.0 3.6 24 516-539 30-53 (82)
67 3r0a_A Putative transcriptiona 87.5 1.1 3.8E-05 39.0 6.6 49 492-546 19-68 (123)
68 2w48_A Sorbitol operon regulat 87.3 0.58 2E-05 47.4 5.3 36 503-542 12-47 (315)
69 2elh_A CG11849-PA, LD40883P; s 86.9 1.1 3.6E-05 36.8 5.8 27 515-541 37-63 (87)
70 2dbb_A Putative HTH-type trans 86.0 1.4 4.8E-05 39.3 6.6 41 495-538 5-45 (151)
71 3nqo_A MARR-family transcripti 85.9 1.8 6.2E-05 40.1 7.5 53 486-539 28-80 (189)
72 2o3f_A Putative HTH-type trans 85.8 2 6.9E-05 37.0 7.2 49 488-538 10-61 (111)
73 1y0u_A Arsenical resistance op 85.8 3.7 0.00013 33.7 8.6 35 498-537 30-64 (96)
74 2cfx_A HTH-type transcriptiona 85.5 1.4 4.8E-05 39.2 6.3 40 496-538 2-41 (144)
75 2cyy_A Putative HTH-type trans 84.5 1.9 6.6E-05 38.5 6.8 40 496-538 4-43 (151)
76 1r1u_A CZRA, repressor protein 84.2 3.1 0.00011 34.9 7.6 46 489-538 15-61 (106)
77 2glo_A Brinker CG9653-PA; prot 84.2 1.8 6.3E-05 32.6 5.5 32 516-548 21-56 (59)
78 1sfu_A 34L protein; protein/Z- 84.2 1.6 5.3E-05 35.6 5.3 32 511-546 24-55 (75)
79 1i1g_A Transcriptional regulat 84.2 1.6 5.6E-05 38.2 6.0 39 497-538 2-40 (141)
80 2cg4_A Regulatory protein ASNC 84.1 2 6.8E-05 38.4 6.7 41 496-539 5-45 (152)
81 3tgn_A ADC operon repressor AD 84.0 1.8 6.2E-05 37.5 6.2 40 496-539 35-74 (146)
82 3bro_A Transcriptional regulat 84.0 3.9 0.00013 35.0 8.4 52 487-539 20-73 (141)
83 2x4h_A Hypothetical protein SS 83.9 1.6 5.3E-05 38.1 5.8 45 495-539 9-54 (139)
84 2w25_A Probable transcriptiona 83.8 1.7 5.8E-05 38.8 6.1 40 496-538 4-43 (150)
85 2p5v_A Transcriptional regulat 83.6 1.8 6.2E-05 39.2 6.2 41 496-539 7-47 (162)
86 2gxg_A 146AA long hypothetical 83.1 3.5 0.00012 35.6 7.7 47 489-539 25-73 (146)
87 3i4p_A Transcriptional regulat 83.1 1.8 6.3E-05 39.3 6.1 39 497-538 1-39 (162)
88 2pn6_A ST1022, 150AA long hypo 83.0 1.9 6.5E-05 38.3 6.0 39 497-538 1-39 (150)
89 3ech_A MEXR, multidrug resista 82.9 2.7 9.2E-05 36.4 6.9 51 486-539 20-74 (142)
90 2jn6_A Protein CGL2762, transp 82.8 2.1 7.2E-05 35.3 5.8 41 497-540 6-47 (97)
91 3sqn_A Conserved domain protei 82.6 1.5 5E-05 47.4 6.0 106 423-546 32-138 (485)
92 2k27_A Paired box protein PAX- 82.5 0.72 2.5E-05 41.6 3.0 39 497-539 26-64 (159)
93 1sfx_A Conserved hypothetical 82.4 1.8 6.3E-05 35.3 5.3 40 496-538 17-56 (109)
94 1q1h_A TFE, transcription fact 82.2 1.2 4.3E-05 37.5 4.3 45 496-546 15-59 (110)
95 2l0k_A Stage III sporulation p 82.1 1.3 4.5E-05 37.4 4.3 38 499-540 7-44 (93)
96 3cuo_A Uncharacterized HTH-typ 81.8 1.9 6.6E-05 35.0 5.2 45 491-538 15-60 (99)
97 2jt1_A PEFI protein; solution 81.6 1.7 5.7E-05 35.4 4.6 24 515-538 23-46 (77)
98 3pqk_A Biofilm growth-associat 81.4 4.1 0.00014 33.7 7.2 50 489-546 12-62 (102)
99 3frw_A Putative Trp repressor 81.3 2.3 7.9E-05 36.9 5.6 40 496-535 36-77 (107)
100 2e1c_A Putative HTH-type trans 81.3 2.3 7.8E-05 39.3 6.1 40 496-538 24-63 (171)
101 3eco_A MEPR; mutlidrug efflux 81.2 4.7 0.00016 34.6 7.8 53 486-539 16-70 (139)
102 3bpv_A Transcriptional regulat 81.1 4.6 0.00016 34.4 7.7 50 487-539 15-66 (138)
103 3jth_A Transcription activator 81.1 4.6 0.00016 33.1 7.3 50 489-546 12-62 (98)
104 2zkz_A Transcriptional repress 81.0 2.4 8.1E-05 35.4 5.5 37 498-538 26-63 (99)
105 2fa5_A Transcriptional regulat 80.6 5.7 0.0002 35.0 8.4 50 488-540 35-87 (162)
106 2oqg_A Possible transcriptiona 80.6 3.4 0.00012 34.6 6.5 45 490-538 11-56 (114)
107 2lkp_A Transcriptional regulat 80.6 3.9 0.00013 34.7 7.0 46 490-539 22-68 (119)
108 2qvo_A Uncharacterized protein 80.5 1.7 5.9E-05 35.7 4.5 44 496-539 9-53 (95)
109 3bdd_A Regulatory protein MARR 80.4 4.5 0.00015 34.6 7.4 41 496-539 28-68 (142)
110 2ia0_A Putative HTH-type trans 80.1 2.6 9E-05 38.8 6.1 41 495-538 13-53 (171)
111 1jhf_A LEXA repressor; LEXA SO 80.1 1 3.6E-05 42.2 3.3 44 496-539 3-49 (202)
112 3iwf_A Transcription regulator 80.0 5 0.00017 34.4 7.3 61 487-549 5-72 (107)
113 2nnn_A Probable transcriptiona 79.7 3.4 0.00012 35.3 6.4 49 488-539 26-75 (140)
114 1ku9_A Hypothetical protein MJ 79.6 5.1 0.00017 34.5 7.5 48 489-538 14-63 (152)
115 1u78_A TC3 transposase, transp 79.4 11 0.00037 32.4 9.5 77 424-539 23-102 (141)
116 3qq6_A HTH-type transcriptiona 79.3 2.1 7.3E-05 33.9 4.5 25 515-539 22-46 (78)
117 1uxc_A FRUR (1-57), fructose r 78.6 1.7 5.7E-05 34.1 3.6 23 517-539 1-23 (65)
118 3cdh_A Transcriptional regulat 78.5 6.4 0.00022 34.5 7.9 50 487-539 29-80 (155)
119 3o9x_A Uncharacterized HTH-typ 78.4 5 0.00017 34.8 7.1 39 495-539 69-107 (133)
120 2fbh_A Transcriptional regulat 78.4 5 0.00017 34.5 7.0 51 487-539 23-75 (146)
121 4hbl_A Transcriptional regulat 78.3 6.4 0.00022 34.4 7.8 49 489-540 29-79 (149)
122 1uly_A Hypothetical protein PH 78.3 3.5 0.00012 38.9 6.4 39 497-539 18-56 (192)
123 1zug_A Phage 434 CRO protein; 78.0 2.5 8.7E-05 31.9 4.4 25 515-539 15-39 (71)
124 1jgs_A Multiple antibiotic res 78.0 6 0.00021 33.7 7.4 51 486-539 19-71 (138)
125 3fm5_A Transcriptional regulat 78.0 5.8 0.0002 34.6 7.4 52 486-539 24-77 (150)
126 2htj_A P fimbrial regulatory p 78.0 4.8 0.00016 32.1 6.3 24 515-538 13-36 (81)
127 2rdp_A Putative transcriptiona 77.9 5.9 0.0002 34.3 7.4 50 488-540 29-80 (150)
128 2qww_A Transcriptional regulat 77.7 5.8 0.0002 34.6 7.3 48 489-539 29-78 (154)
129 1r1t_A Transcriptional repress 77.6 5.6 0.00019 34.5 7.1 44 491-538 37-81 (122)
130 1r69_A Repressor protein CI; g 77.6 2.7 9.2E-05 31.6 4.4 25 515-539 13-37 (69)
131 2xi8_A Putative transcription 77.5 2.4 8.2E-05 31.5 4.1 25 515-539 13-37 (66)
132 2a6c_A Helix-turn-helix motif; 77.3 2.7 9.1E-05 33.6 4.6 25 515-539 30-54 (83)
133 3hsr_A HTH-type transcriptiona 76.9 4.8 0.00017 34.8 6.5 52 486-540 21-74 (140)
134 1y7y_A C.AHDI; helix-turn-heli 76.8 2.9 9.9E-05 31.9 4.5 25 515-539 25-49 (74)
135 4b8x_A SCO5413, possible MARR- 76.8 5.1 0.00017 35.4 6.7 53 486-539 20-74 (147)
136 3bj6_A Transcriptional regulat 76.7 6.5 0.00022 34.1 7.4 48 489-539 28-77 (152)
137 3cjn_A Transcriptional regulat 76.7 4.2 0.00014 35.9 6.2 41 496-539 49-89 (162)
138 3b7h_A Prophage LP1 protein 11 76.6 3.3 0.00011 31.9 4.8 25 515-539 19-43 (78)
139 2b5a_A C.BCLI; helix-turn-heli 76.4 3 0.0001 32.1 4.5 25 515-539 22-46 (77)
140 3f6w_A XRE-family like protein 76.4 2.2 7.5E-05 33.7 3.7 25 515-539 26-50 (83)
141 4ghj_A Probable transcriptiona 76.2 2.7 9.2E-05 35.7 4.4 25 515-539 48-72 (101)
142 2kko_A Possible transcriptiona 76.1 4.1 0.00014 34.4 5.6 49 490-546 15-64 (108)
143 2wiu_B HTH-type transcriptiona 76.0 3.6 0.00012 32.6 5.0 25 515-539 24-48 (88)
144 1s3j_A YUSO protein; structura 75.9 4.5 0.00015 35.3 6.1 49 488-539 24-74 (155)
145 3eus_A DNA-binding protein; st 75.9 2.8 9.6E-05 33.8 4.3 25 515-539 26-50 (86)
146 2k9q_A Uncharacterized protein 75.7 2.4 8E-05 33.2 3.7 25 515-539 14-38 (77)
147 2pex_A Transcriptional regulat 75.7 6.3 0.00022 34.4 7.0 51 487-540 33-85 (153)
148 3kp7_A Transcriptional regulat 75.6 5.3 0.00018 34.9 6.5 47 489-539 26-74 (151)
149 2r1j_L Repressor protein C2; p 75.5 2.5 8.6E-05 31.6 3.7 25 515-539 17-41 (68)
150 2nyx_A Probable transcriptiona 75.4 5 0.00017 36.0 6.4 41 496-539 42-82 (168)
151 3t76_A VANU, transcriptional r 75.4 3.1 0.00011 34.4 4.5 25 515-539 36-60 (88)
152 3f3x_A Transcriptional regulat 75.2 7.3 0.00025 33.6 7.2 41 496-540 34-74 (144)
153 1neq_A DNA-binding protein NER 75.1 1.7 5.8E-05 34.8 2.8 25 515-539 21-45 (74)
154 3oop_A LIN2960 protein; protei 75.1 5 0.00017 34.6 6.1 50 487-539 23-74 (143)
155 3s2w_A Transcriptional regulat 75.0 4.9 0.00017 35.5 6.2 51 486-539 35-87 (159)
156 3s8q_A R-M controller protein; 74.9 3.3 0.00011 32.5 4.5 25 515-539 23-47 (82)
157 3nrv_A Putative transcriptiona 74.8 4.8 0.00016 34.9 5.9 42 496-540 37-78 (148)
158 2p5k_A Arginine repressor; DNA 74.8 4.2 0.00014 30.5 4.8 25 514-538 17-46 (64)
159 3g3z_A NMB1585, transcriptiona 74.4 7.9 0.00027 33.4 7.3 49 488-539 18-68 (145)
160 3k0l_A Repressor protein; heli 74.4 7.2 0.00025 34.6 7.1 51 486-539 31-83 (162)
161 3mn2_A Probable ARAC family tr 74.4 35 0.0012 28.1 11.5 36 411-446 6-41 (108)
162 1u2w_A CADC repressor, cadmium 74.1 6.7 0.00023 33.8 6.6 38 498-538 41-78 (122)
163 1on2_A Transcriptional regulat 73.8 2.9 0.0001 36.5 4.3 43 497-539 2-45 (142)
164 2ef8_A C.ECOT38IS, putative tr 73.8 3.7 0.00013 32.1 4.5 25 515-539 22-46 (84)
165 2ewt_A BLDD, putative DNA-bind 73.7 4.4 0.00015 30.6 4.8 25 515-539 20-46 (71)
166 3ryp_A Catabolite gene activat 73.5 13 0.00044 33.7 8.8 27 516-546 167-193 (210)
167 3boq_A Transcriptional regulat 73.5 4.3 0.00015 35.7 5.3 51 488-540 33-86 (160)
168 3fmy_A HTH-type transcriptiona 73.4 2.6 8.9E-05 32.9 3.4 25 515-539 23-47 (73)
169 1adr_A P22 C2 repressor; trans 73.3 3 0.0001 32.0 3.7 25 515-539 17-41 (76)
170 3kz3_A Repressor protein CI; f 73.3 2.2 7.5E-05 33.7 3.0 25 515-539 24-48 (80)
171 1hlv_A CENP-B, major centromer 73.2 4.9 0.00017 34.6 5.5 45 496-544 7-53 (131)
172 2a61_A Transcriptional regulat 73.2 4.6 0.00016 34.7 5.4 41 496-539 30-70 (145)
173 4fx0_A Probable transcriptiona 73.1 11 0.00036 33.4 7.9 54 487-540 19-76 (148)
174 1lj9_A Transcriptional regulat 73.0 6 0.0002 34.0 6.1 50 487-539 15-66 (144)
175 3hyi_A Protein DUF199/WHIA; la 72.8 8.8 0.0003 38.9 8.0 50 488-540 233-284 (295)
176 2gau_A Transcriptional regulat 72.8 15 0.00052 33.9 9.3 49 494-546 148-206 (232)
177 2dk5_A DNA-directed RNA polyme 72.6 3 0.0001 34.8 3.8 43 495-538 16-58 (91)
178 1x57_A Endothelial differentia 72.5 5 0.00017 32.3 5.1 25 515-539 25-49 (91)
179 1p6r_A Penicillinase repressor 72.0 4.4 0.00015 32.2 4.6 42 495-539 5-50 (82)
180 2kpj_A SOS-response transcript 71.8 4.1 0.00014 33.2 4.4 25 515-539 21-45 (94)
181 2fu4_A Ferric uptake regulatio 71.8 6.2 0.00021 31.3 5.5 45 496-546 14-64 (83)
182 3bs3_A Putative DNA-binding pr 71.8 4 0.00014 31.3 4.2 25 515-539 22-46 (76)
183 3omt_A Uncharacterized protein 71.8 2.6 8.9E-05 32.4 3.1 25 515-539 20-44 (73)
184 3g5g_A Regulatory protein; tra 71.5 4.2 0.00014 33.9 4.5 25 515-539 40-64 (99)
185 2jt1_A PEFI protein; solution 71.1 5.9 0.0002 32.1 5.1 26 421-446 22-47 (77)
186 2ppx_A AGR_C_3184P, uncharacte 71.0 4.1 0.00014 33.6 4.3 25 515-539 42-66 (99)
187 2fbi_A Probable transcriptiona 71.0 4 0.00014 34.9 4.4 41 496-539 33-73 (142)
188 2hr3_A Probable transcriptiona 70.7 4.2 0.00014 35.2 4.5 41 497-539 33-73 (147)
189 3deu_A Transcriptional regulat 70.5 9.7 0.00033 34.2 7.1 52 486-539 38-91 (166)
190 1ais_B TFB TFIIB, protein (tra 70.5 67 0.0023 29.6 18.5 175 327-543 10-192 (200)
191 3oio_A Transcriptional regulat 70.4 42 0.0014 27.9 10.7 35 412-446 12-46 (113)
192 3f6o_A Probable transcriptiona 70.1 4.1 0.00014 34.9 4.3 44 490-537 8-52 (118)
193 1j5y_A Transcriptional regulat 70.0 5.8 0.0002 36.9 5.6 38 499-538 21-58 (187)
194 3bja_A Transcriptional regulat 69.9 4.8 0.00017 34.3 4.7 50 487-539 19-70 (139)
195 2eth_A Transcriptional regulat 69.8 5.1 0.00017 35.2 4.9 41 496-539 41-81 (154)
196 2wus_R RODZ, putative uncharac 69.7 5.2 0.00018 34.4 4.8 25 515-539 19-43 (112)
197 2o38_A Hypothetical protein; a 69.4 4.7 0.00016 35.1 4.5 25 515-539 52-76 (120)
198 3u2r_A Regulatory protein MARR 69.2 5.6 0.00019 35.6 5.1 53 486-539 31-85 (168)
199 2oz6_A Virulence factor regula 69.0 19 0.00066 32.4 8.9 27 516-546 164-190 (207)
200 1l9z_H Sigma factor SIGA; heli 69.0 58 0.002 34.6 13.7 35 279-313 285-321 (438)
201 2fbk_A Transcriptional regulat 68.8 5.1 0.00018 36.4 4.9 53 487-539 55-109 (181)
202 1ub9_A Hypothetical protein PH 68.3 4.8 0.00016 32.5 4.1 38 498-538 15-52 (100)
203 3vk0_A NHTF, transcriptional r 68.2 4.4 0.00015 34.3 4.0 25 515-539 33-57 (114)
204 3b02_A Transcriptional regulat 68.2 18 0.00062 32.6 8.5 50 494-547 107-166 (195)
205 1xmk_A Double-stranded RNA-spe 68.2 3.5 0.00012 33.7 3.2 25 515-539 24-49 (79)
206 3bd1_A CRO protein; transcript 67.8 5.2 0.00018 31.4 4.1 24 515-539 11-34 (79)
207 3e6m_A MARR family transcripti 67.7 8.5 0.00029 34.1 6.0 49 488-539 40-90 (161)
208 4aik_A Transcriptional regulat 67.6 15 0.00052 32.5 7.6 51 487-539 17-69 (151)
209 2zcw_A TTHA1359, transcription 67.6 22 0.00075 32.2 9.0 49 494-546 114-172 (202)
210 3dv8_A Transcriptional regulat 67.5 12 0.00042 34.1 7.3 48 495-546 144-195 (220)
211 3jw4_A Transcriptional regulat 67.5 5.7 0.00019 34.6 4.7 50 489-539 29-80 (148)
212 2hin_A GP39, repressor protein 67.3 5.9 0.0002 31.6 4.3 22 518-539 12-33 (71)
213 3iwz_A CAP-like, catabolite ac 67.2 28 0.00096 31.9 9.8 49 494-546 155-213 (230)
214 4ham_A LMO2241 protein; struct 67.2 4.6 0.00016 35.5 4.0 30 513-546 34-64 (134)
215 3kxa_A NGO0477 protein, putati 67.1 5.4 0.00019 35.6 4.5 25 515-539 80-104 (141)
216 2jsc_A Transcriptional regulat 66.9 5.2 0.00018 34.3 4.2 35 499-537 21-55 (118)
217 2auw_A Hypothetical protein NE 66.7 5.3 0.00018 37.4 4.4 37 497-539 90-126 (170)
218 3trb_A Virulence-associated pr 66.7 5.7 0.0002 33.6 4.4 25 515-539 26-50 (104)
219 2frh_A SARA, staphylococcal ac 66.7 4.6 0.00016 34.8 3.8 50 489-539 25-76 (127)
220 2rn7_A IS629 ORFA; helix, all 66.4 3.9 0.00013 34.3 3.2 24 517-540 31-54 (108)
221 1rr7_A Middle operon regulator 66.3 8.2 0.00028 34.3 5.4 39 499-543 81-119 (129)
222 3mlf_A Transcriptional regulat 66.3 6.4 0.00022 33.4 4.6 25 515-539 35-59 (111)
223 2k9s_A Arabinose operon regula 66.2 54 0.0018 26.9 11.0 36 411-446 7-43 (107)
224 1gdt_A GD resolvase, protein ( 66.1 5.6 0.00019 36.6 4.6 24 515-538 157-180 (183)
225 2pg4_A Uncharacterized protein 66.0 5.6 0.00019 32.4 4.1 25 515-539 29-54 (95)
226 2hzt_A Putative HTH-type trans 65.6 5.6 0.00019 33.4 4.1 45 490-538 4-50 (107)
227 3op9_A PLI0006 protein; struct 65.6 5.9 0.0002 33.3 4.3 25 515-539 21-45 (114)
228 2bv6_A MGRA, HTH-type transcri 65.6 6.4 0.00022 33.8 4.6 41 496-539 34-74 (142)
229 2r0q_C Putative transposon TN5 65.3 4.4 0.00015 38.3 3.7 32 502-538 166-197 (209)
230 2pij_A Prophage PFL 6 CRO; tra 65.2 7.8 0.00027 29.2 4.5 22 515-537 13-34 (67)
231 1ft9_A Carbon monoxide oxidati 65.2 5.6 0.00019 36.9 4.4 27 516-546 163-189 (222)
232 2wte_A CSA3; antiviral protein 64.9 12 0.00041 36.6 6.9 47 493-546 146-192 (244)
233 3e97_A Transcriptional regulat 64.5 5.9 0.0002 36.8 4.4 28 515-546 174-201 (231)
234 4ev0_A Transcription regulator 64.4 11 0.00037 34.4 6.2 29 515-547 162-190 (216)
235 1lmb_3 Protein (lambda repress 64.3 5.7 0.00019 31.8 3.7 25 515-539 29-53 (92)
236 2l49_A C protein; P2 bacteriop 64.2 6.2 0.00021 32.1 4.0 25 515-539 16-40 (99)
237 1tbx_A ORF F-93, hypothetical 64.1 5.6 0.00019 32.5 3.7 41 496-539 5-49 (99)
238 1b0n_A Protein (SINR protein); 64.0 7.3 0.00025 32.2 4.5 25 515-539 13-37 (111)
239 2o0m_A Transcriptional regulat 63.9 1.4 4.9E-05 45.2 0.0 43 497-542 18-60 (345)
240 2ao9_A Phage protein; structur 63.8 12 0.00042 34.4 6.3 44 495-538 22-70 (155)
241 3fm5_A Transcriptional regulat 63.7 47 0.0016 28.6 10.0 64 375-446 14-77 (150)
242 3ivp_A Putative transposon-rel 63.6 8.7 0.0003 32.9 5.0 25 515-539 24-48 (126)
243 1z4h_A TORI, TOR inhibition pr 63.4 5.6 0.00019 30.8 3.4 26 515-540 9-34 (66)
244 2vn2_A DNAD, chromosome replic 63.3 8.5 0.00029 33.7 4.9 45 496-540 29-75 (128)
245 2l8n_A Transcriptional repress 63.2 3.4 0.00011 32.5 2.0 23 516-538 9-31 (67)
246 1okr_A MECI, methicillin resis 63.0 7.1 0.00024 33.0 4.3 43 495-540 6-52 (123)
247 3e6c_C CPRK, cyclic nucleotide 63.0 30 0.001 32.4 9.3 49 494-546 144-203 (250)
248 3kcc_A Catabolite gene activat 63.0 24 0.00081 33.7 8.6 27 516-546 217-243 (260)
249 2ict_A Antitoxin HIGA; helix-t 62.8 7.7 0.00026 31.3 4.3 25 515-539 20-44 (94)
250 3qwg_A ESX-1 secretion-associa 62.7 5.4 0.00018 35.0 3.5 35 503-538 12-51 (123)
251 3d0s_A Transcriptional regulat 62.5 6.6 0.00023 36.3 4.4 28 515-546 176-203 (227)
252 2fmy_A COOA, carbon monoxide o 62.5 6.5 0.00022 36.3 4.3 28 515-546 166-193 (220)
253 3mky_B Protein SOPB; partition 62.4 11 0.00038 35.8 5.8 47 493-540 20-66 (189)
254 1xn7_A Hypothetical protein YH 62.3 5.8 0.0002 32.2 3.4 25 515-539 15-39 (78)
255 2y75_A HTH-type transcriptiona 62.3 8.2 0.00028 33.4 4.6 29 514-546 24-52 (129)
256 1z91_A Organic hydroperoxide r 62.1 6.3 0.00021 34.0 3.9 43 496-541 37-79 (147)
257 3la7_A Global nitrogen regulat 61.9 6.9 0.00024 37.0 4.4 28 515-546 192-219 (243)
258 2b0l_A GTP-sensing transcripti 61.7 4.9 0.00017 34.0 3.0 30 513-546 39-69 (102)
259 1z7u_A Hypothetical protein EF 61.5 12 0.00041 31.6 5.5 45 490-538 12-58 (112)
260 1rzs_A Antirepressor, regulato 61.5 3.4 0.00012 31.5 1.8 21 517-537 11-31 (61)
261 3fym_A Putative uncharacterize 61.4 8.2 0.00028 33.8 4.5 26 515-540 15-40 (130)
262 3dkw_A DNR protein; CRP-FNR, H 61.1 6.1 0.00021 36.4 3.8 29 515-547 177-205 (227)
263 3tqn_A Transcriptional regulat 61.0 6.1 0.00021 33.7 3.5 29 514-546 30-59 (113)
264 2h09_A Transcriptional regulat 60.9 6.6 0.00023 34.8 3.9 25 515-539 53-77 (155)
265 2g9w_A Conserved hypothetical 60.7 11 0.00037 33.0 5.2 45 494-540 4-52 (138)
266 2fxa_A Protease production reg 60.5 15 0.00053 34.4 6.6 48 489-539 36-85 (207)
267 3f52_A CLP gene regulator (CLG 60.4 6.6 0.00022 33.1 3.6 25 515-539 40-64 (117)
268 2ek5_A Predicted transcription 59.5 8 0.00027 34.0 4.1 30 513-546 24-54 (129)
269 2jvl_A TRMBF1; coactivator, he 59.2 8.3 0.00028 32.5 4.0 25 515-539 48-72 (107)
270 2hwv_A DNA-binding response re 59.2 23 0.00077 30.6 6.9 50 496-546 43-97 (121)
271 3eco_A MEPR; mutlidrug efflux 58.8 35 0.0012 28.8 8.2 64 376-446 7-70 (139)
272 1g2h_A Transcriptional regulat 58.8 9.4 0.00032 29.1 3.9 20 518-537 35-54 (61)
273 1j1v_A Chromosomal replication 58.7 24 0.00081 29.5 6.7 30 515-548 45-75 (94)
274 1zyb_A Transcription regulator 58.7 7.1 0.00024 36.6 3.9 27 516-546 186-212 (232)
275 2k9l_A RNA polymerase sigma fa 58.6 19 0.00066 28.7 5.9 56 483-545 15-73 (76)
276 1fx7_A Iron-dependent represso 58.5 4.2 0.00014 39.1 2.2 43 496-539 3-47 (230)
277 2kfs_A Conserved hypothetical 58.1 5.1 0.00018 36.7 2.6 25 515-539 30-54 (148)
278 2k4j_A Putative transcriptiona 58.1 18 0.00061 30.9 6.0 50 496-546 41-95 (115)
279 3by6_A Predicted transcription 57.8 7.3 0.00025 34.0 3.5 30 513-546 31-61 (126)
280 4ich_A Transcriptional regulat 57.8 6.3 0.00022 38.9 3.5 22 515-536 139-160 (311)
281 3deu_A Transcriptional regulat 57.8 57 0.0019 29.0 9.7 64 375-446 28-91 (166)
282 2ecc_A Homeobox and leucine zi 57.7 14 0.00049 29.9 5.0 51 497-547 10-61 (76)
283 3lfp_A CSP231I C protein; tran 57.7 9.9 0.00034 31.0 4.2 25 515-539 13-41 (98)
284 3neu_A LIN1836 protein; struct 57.6 9.7 0.00033 33.1 4.3 30 513-546 33-63 (125)
285 1v4r_A Transcriptional repress 57.6 3.4 0.00012 34.4 1.2 30 513-546 31-61 (102)
286 2eby_A Putative HTH-type trans 57.5 8.7 0.0003 32.2 3.8 25 515-539 23-47 (113)
287 3cec_A Putative antidote prote 57.5 8.5 0.00029 31.7 3.7 25 515-539 30-54 (104)
288 3lsg_A Two-component response 57.4 24 0.00082 28.8 6.6 25 516-540 19-43 (103)
289 2da1_A Alpha-fetoprotein enhan 56.8 19 0.00063 27.9 5.4 51 497-547 14-65 (70)
290 1y6u_A XIS, excisionase from t 56.6 6.2 0.00021 31.4 2.6 25 515-539 15-39 (70)
291 3r1f_A ESX-1 secretion-associa 56.4 7.6 0.00026 34.5 3.4 25 514-538 24-53 (135)
292 3nrv_A Putative transcriptiona 56.3 36 0.0012 29.1 7.8 73 362-446 4-77 (148)
293 3b73_A PHIH1 repressor-like pr 56.2 11 0.00037 32.6 4.3 40 497-539 11-52 (111)
294 2bnm_A Epoxidase; oxidoreducta 56.0 11 0.00036 34.7 4.5 25 515-539 22-46 (198)
295 2cw1_A SN4M; lambda CRO fold, 55.9 8.1 0.00028 30.3 3.1 23 516-538 13-35 (65)
296 1r71_A Transcriptional repress 55.8 12 0.00042 35.0 4.9 41 495-538 34-74 (178)
297 1y9q_A Transcriptional regulat 55.7 11 0.00036 34.7 4.4 25 515-539 23-47 (192)
298 3bdn_A Lambda repressor; repre 55.5 7.3 0.00025 36.9 3.4 25 515-539 29-53 (236)
299 2v79_A DNA replication protein 55.3 14 0.00048 32.9 5.0 47 496-542 29-77 (135)
300 3hrs_A Metalloregulator SCAR; 55.1 13 0.00044 35.4 5.0 27 513-539 17-43 (214)
301 3lsg_A Two-component response 54.9 83 0.0029 25.4 11.0 29 418-446 13-42 (103)
302 1pdn_C Protein (PRD paired); p 54.8 52 0.0018 27.1 8.4 24 424-447 34-57 (128)
303 3bro_A Transcriptional regulat 54.7 48 0.0016 27.9 8.3 64 376-446 10-73 (141)
304 2k02_A Ferrous iron transport 54.5 5.4 0.00018 33.2 1.9 25 515-539 15-39 (87)
305 3oou_A LIN2118 protein; protei 54.4 19 0.00066 29.8 5.5 26 515-540 20-45 (108)
306 3e7l_A Transcriptional regulat 54.4 14 0.00049 28.1 4.3 34 501-537 20-53 (63)
307 1sd4_A Penicillinase repressor 54.0 13 0.00045 31.4 4.5 43 495-540 6-52 (126)
308 3mn2_A Probable ARAC family tr 53.8 19 0.00066 29.7 5.4 26 515-540 17-42 (108)
309 3rkx_A Biotin-[acetyl-COA-carb 53.7 10 0.00036 38.6 4.4 43 500-547 4-46 (323)
310 3f6v_A Possible transcriptiona 53.6 9 0.00031 34.6 3.5 36 498-537 57-92 (151)
311 3a03_A T-cell leukemia homeobo 53.6 23 0.00079 26.2 5.3 51 496-546 3-54 (56)
312 1bia_A BIRA bifunctional prote 53.0 18 0.0006 36.6 5.9 38 498-538 4-41 (321)
313 2qq9_A Diphtheria toxin repres 52.7 6.2 0.00021 37.8 2.3 44 496-539 3-47 (226)
314 2da4_A Hypothetical protein DK 52.7 26 0.0009 27.8 5.8 51 497-547 15-70 (80)
315 3k2a_A Homeobox protein MEIS2; 52.5 29 0.00098 26.9 5.8 54 496-549 4-61 (67)
316 4a0z_A Transcription factor FA 52.5 15 0.00051 34.6 5.0 36 499-537 12-47 (190)
317 4aik_A Transcriptional regulat 52.3 98 0.0034 27.1 10.2 27 420-446 43-69 (151)
318 2bgc_A PRFA; bacterial infecti 52.1 9.4 0.00032 35.9 3.5 27 516-546 169-196 (238)
319 1stz_A Heat-inducible transcri 51.9 16 0.00055 37.5 5.5 42 497-538 15-60 (338)
320 3rjp_A COVR; winged helix-turn 51.7 32 0.0011 27.8 6.4 50 496-546 22-76 (96)
321 1vz0_A PARB, chromosome partit 51.7 17 0.00058 35.2 5.3 41 495-538 116-156 (230)
322 1k78_A Paired box protein PAX5 51.5 81 0.0028 27.3 9.5 24 424-447 49-72 (149)
323 1j9i_A GPNU1 DBD;, terminase s 51.5 7 0.00024 30.2 2.1 24 517-540 3-26 (68)
324 2p5t_A Putative transcriptiona 51.0 3.2 0.00011 37.4 0.0 25 515-539 13-37 (158)
325 1hw1_A FADR, fatty acid metabo 51.0 13 0.00043 35.4 4.2 30 513-546 27-57 (239)
326 4bbr_M Transcription initiatio 50.7 28 0.00096 35.8 7.1 80 331-447 131-210 (345)
327 1yz8_P Pituitary homeobox 2; D 50.6 43 0.0015 25.7 6.6 53 496-548 9-62 (68)
328 1gxq_A PHOB, phosphate regulon 50.3 24 0.00081 29.3 5.4 50 496-546 31-85 (106)
329 2fbh_A Transcriptional regulat 50.0 1.1E+02 0.0038 25.6 10.0 63 376-446 13-75 (146)
330 2vz4_A Tipal, HTH-type transcr 50.0 9.3 0.00032 32.4 2.8 26 516-541 1-26 (108)
331 3edp_A LIN2111 protein; APC883 49.9 15 0.00051 35.4 4.6 30 513-546 29-59 (236)
332 1ahd_P Antennapedia protein mu 49.7 47 0.0016 25.5 6.7 53 497-549 9-62 (68)
333 2dmq_A LIM/homeobox protein LH 49.5 28 0.00097 27.5 5.5 53 497-549 14-67 (80)
334 2dmn_A Homeobox protein TGIF2L 49.5 42 0.0014 27.0 6.6 55 497-551 14-72 (83)
335 2fa5_A Transcriptional regulat 49.0 85 0.0029 27.1 9.2 24 423-446 63-86 (162)
336 3uj3_X DNA-invertase; helix-tu 48.9 3.6 0.00012 38.3 0.0 34 502-540 149-182 (193)
337 2wv0_A YVOA, HTH-type transcri 48.7 17 0.00058 35.2 4.8 30 513-546 30-60 (243)
338 3fx3_A Cyclic nucleotide-bindi 48.7 10 0.00036 35.2 3.2 28 515-546 177-204 (237)
339 2pmu_A Response regulator PHOP 48.6 25 0.00087 29.5 5.4 49 496-545 34-87 (110)
340 1hkq_A REPA, replication prote 48.5 41 0.0014 29.4 6.9 58 489-546 11-77 (132)
341 3oop_A LIN2960 protein; protei 48.4 62 0.0021 27.5 8.0 62 376-446 13-74 (143)
342 2e1o_A Homeobox protein PRH; D 48.2 28 0.00095 27.0 5.1 52 497-548 14-66 (70)
343 3dn7_A Cyclic nucleotide bindi 47.9 8.4 0.00029 34.7 2.3 25 515-539 167-191 (194)
344 1mkm_A ICLR transcriptional re 47.9 17 0.00057 35.2 4.6 24 515-538 22-45 (249)
345 3bwg_A Uncharacterized HTH-typ 47.8 17 0.00058 35.0 4.6 30 513-546 25-55 (239)
346 3c7j_A Transcriptional regulat 47.8 15 0.00051 35.4 4.2 30 513-546 46-75 (237)
347 2xrn_A HTH-type transcriptiona 47.7 15 0.00051 35.4 4.2 26 513-538 18-43 (241)
348 2h8r_A Hepatocyte nuclear fact 47.5 30 0.001 33.7 6.2 25 515-539 43-67 (221)
349 2l1p_A DNA-binding protein SAT 47.4 12 0.0004 31.0 2.8 24 516-539 32-55 (83)
350 1ig7_A Homeotic protein MSX-1; 47.3 30 0.001 25.6 5.0 50 497-546 7-57 (58)
351 2ofy_A Putative XRE-family tra 47.3 20 0.00068 28.2 4.2 22 518-539 29-50 (86)
352 2dmu_A Homeobox protein goosec 47.2 26 0.0009 27.0 4.9 52 497-548 14-66 (70)
353 1p4x_A Staphylococcal accessor 47.2 25 0.00085 34.4 5.8 43 496-539 155-197 (250)
354 1x2n_A Homeobox protein pknox1 47.0 21 0.0007 27.9 4.2 55 496-550 13-71 (73)
355 1xmk_A Double-stranded RNA-spe 46.9 22 0.00076 28.9 4.4 24 423-446 25-49 (79)
356 2g7u_A Transcriptional regulat 46.8 24 0.00082 34.2 5.6 25 514-538 27-51 (257)
357 3rqi_A Response regulator prot 46.7 10 0.00036 34.0 2.8 39 496-537 139-177 (184)
358 1ylf_A RRF2 family protein; st 46.7 20 0.0007 31.9 4.7 29 514-546 28-56 (149)
359 1puf_B PRE-B-cell leukemia tra 46.6 31 0.001 26.9 5.2 56 496-551 7-66 (73)
360 1ntc_A Protein (nitrogen regul 46.5 13 0.00044 30.5 3.1 37 499-538 50-86 (91)
361 1jgg_A Segmentation protein EV 46.4 32 0.0011 25.7 5.1 50 497-546 8-58 (60)
362 1opc_A OMPR, OMPRC; transcript 46.4 18 0.00061 30.3 4.0 49 496-545 31-84 (110)
363 3sxy_A Transcriptional regulat 46.4 13 0.00045 34.9 3.5 31 513-547 32-62 (218)
364 2fsw_A PG_0823 protein; alpha- 46.1 13 0.00043 31.1 3.0 43 492-538 17-61 (107)
365 3eet_A Putative GNTR-family tr 46.0 19 0.00065 35.6 4.7 30 513-546 49-79 (272)
366 3lwf_A LIN1550 protein, putati 45.9 32 0.0011 31.3 5.9 47 496-546 21-70 (159)
367 1rp3_A RNA polymerase sigma fa 45.8 1.8E+02 0.006 26.5 14.5 36 279-314 100-135 (239)
368 3f8m_A GNTR-family protein tra 45.7 19 0.00064 35.0 4.6 32 511-546 30-62 (248)
369 2k9m_A RNA polymerase sigma fa 45.6 51 0.0017 29.1 7.0 48 495-546 15-65 (130)
370 2f2e_A PA1607; transcription f 45.6 25 0.00087 31.2 5.1 24 515-538 36-59 (146)
371 2hdd_A Protein (engrailed home 45.2 30 0.001 25.9 4.8 51 496-546 9-60 (61)
372 3pvv_A Chromosomal replication 44.9 54 0.0018 27.7 6.8 31 515-549 49-79 (101)
373 2htj_A P fimbrial regulatory p 44.7 29 0.00098 27.3 4.8 24 423-446 14-37 (81)
374 3nau_A Zinc fingers and homeob 44.5 38 0.0013 26.7 5.3 51 498-548 12-63 (66)
375 1ic8_A Hepatocyte nuclear fact 44.5 37 0.0013 32.2 6.3 24 515-538 42-65 (194)
376 1b72_B Protein (PBX1); homeodo 44.5 31 0.0011 27.8 5.1 55 496-550 7-65 (87)
377 1o5l_A Transcriptional regulat 43.8 12 0.00041 34.4 2.8 28 515-546 163-190 (213)
378 3oou_A LIN2118 protein; protei 43.6 58 0.002 26.7 6.8 74 339-442 16-90 (108)
379 2o0y_A Transcriptional regulat 43.6 22 0.00076 34.6 4.8 25 514-538 36-60 (260)
380 1k61_A Mating-type protein alp 43.4 85 0.0029 23.2 7.1 51 496-546 4-58 (60)
381 3e6m_A MARR family transcripti 43.3 71 0.0024 27.9 7.8 64 374-446 27-90 (161)
382 2cue_A Paired box protein PAX6 43.3 42 0.0014 26.7 5.6 52 497-548 14-66 (80)
383 1nk2_P Homeobox protein VND; h 43.2 37 0.0013 26.8 5.2 54 497-550 16-70 (77)
384 1xn7_A Hypothetical protein YH 43.2 34 0.0011 27.6 5.0 24 423-446 16-39 (78)
385 2jml_A DNA binding domain/tran 43.1 14 0.00047 29.5 2.7 24 516-539 5-28 (81)
386 1b72_A Protein (homeobox prote 43.1 45 0.0015 27.5 6.0 54 496-549 40-94 (97)
387 1umq_A Photosynthetic apparatu 43.1 21 0.00071 29.2 3.7 21 517-537 55-75 (81)
388 3gbg_A TCP pilus virulence reg 43.1 1.8E+02 0.0061 27.6 11.3 28 418-445 180-207 (276)
389 3knw_A Putative transcriptiona 42.9 1.6E+02 0.0054 25.8 10.3 79 289-367 28-108 (212)
390 2h1k_A IPF-1, pancreatic and d 42.9 41 0.0014 25.4 5.3 51 497-547 10-61 (63)
391 1zq3_P PRD-4, homeotic bicoid 42.9 53 0.0018 25.2 6.0 53 497-549 9-62 (68)
392 2k40_A Homeobox expressed in E 42.6 37 0.0013 25.9 5.0 52 496-547 7-59 (67)
393 3oio_A Transcriptional regulat 42.5 62 0.0021 26.8 6.9 45 336-380 15-59 (113)
394 3k2z_A LEXA repressor; winged 42.3 35 0.0012 31.6 5.7 35 411-445 12-46 (196)
395 3plo_X DNA-invertase; resolvas 42.2 5.3 0.00018 37.2 0.0 28 515-542 157-184 (193)
396 1r8d_A Transcription activator 42.1 11 0.00039 31.8 2.1 25 517-541 3-27 (109)
397 3a02_A Homeobox protein arista 42.1 37 0.0013 25.3 4.8 51 496-546 5-56 (60)
398 2ia2_A Putative transcriptiona 41.7 24 0.0008 34.5 4.6 26 513-538 33-58 (265)
399 3zq7_A KDP operon transcriptio 41.4 43 0.0015 27.4 5.6 50 496-546 28-82 (102)
400 3t8r_A Staphylococcus aureus C 41.3 30 0.001 30.7 4.9 29 514-546 26-54 (143)
401 3bpv_A Transcriptional regulat 41.2 82 0.0028 26.3 7.6 62 376-446 5-66 (138)
402 2di3_A Bacterial regulatory pr 41.1 22 0.00076 33.8 4.3 30 513-546 24-54 (239)
403 2jzy_A Transcriptional regulat 41.1 26 0.00089 29.6 4.2 49 496-545 28-81 (112)
404 1yyv_A Putative transcriptiona 41.0 25 0.00086 30.7 4.3 24 515-538 47-71 (131)
405 1hqc_A RUVB; extended AAA-ATPa 40.9 30 0.001 33.7 5.3 44 496-539 244-287 (324)
406 2qlz_A Transcription factor PF 40.8 42 0.0014 32.5 6.2 24 515-538 177-200 (232)
407 2hs5_A Putative transcriptiona 40.4 18 0.00062 34.7 3.5 38 503-546 40-77 (239)
408 1akh_A Protein (mating-type pr 40.3 28 0.00097 26.0 3.9 48 496-543 11-59 (61)
409 2obp_A Putative DNA-binding pr 40.1 60 0.002 27.3 6.2 45 495-539 12-59 (96)
410 3jw4_A Transcriptional regulat 40.0 47 0.0016 28.5 5.9 25 422-446 56-80 (148)
411 3k0l_A Repressor protein; heli 39.9 71 0.0024 27.9 7.2 65 373-446 19-83 (162)
412 3mkl_A HTH-type transcriptiona 39.9 28 0.00095 29.4 4.3 25 515-539 22-46 (120)
413 2p4w_A Transcriptional regulat 39.5 29 0.001 32.8 4.8 41 493-537 8-49 (202)
414 3tgn_A ADC operon repressor AD 39.3 35 0.0012 29.1 4.9 23 424-446 52-74 (146)
415 3rkq_A Homeobox protein NKX-2. 39.2 41 0.0014 24.6 4.6 48 497-544 9-57 (58)
416 3ihu_A Transcriptional regulat 39.1 20 0.00068 33.8 3.5 37 504-546 29-65 (222)
417 2rdp_A Putative transcriptiona 39.1 1.2E+02 0.0041 25.6 8.5 24 423-446 56-79 (150)
418 2k27_A Paired box protein PAX- 39.1 1.3E+02 0.0045 26.3 8.9 25 424-448 42-66 (159)
419 2oa4_A SIR5; structure, struct 39.0 11 0.00037 32.4 1.4 34 504-541 42-75 (101)
420 1b0n_A Protein (SINR protein); 38.4 35 0.0012 27.9 4.6 24 423-446 14-37 (111)
421 2da2_A Alpha-fetoprotein enhan 38.4 21 0.00072 27.6 3.0 51 497-547 14-65 (70)
422 1fjl_A Paired protein; DNA-bin 38.3 49 0.0017 26.3 5.3 52 497-548 25-77 (81)
423 2fjr_A Repressor protein CI; g 38.3 27 0.00094 31.7 4.2 22 518-539 22-43 (189)
424 1jgs_A Multiple antibiotic res 37.8 94 0.0032 25.9 7.5 64 374-446 8-71 (138)
425 3mkl_A HTH-type transcriptiona 37.7 60 0.0021 27.2 6.1 44 336-380 15-58 (120)
426 1ftt_A TTF-1 HD, thyroid trans 37.6 50 0.0017 25.3 5.0 52 497-548 9-61 (68)
427 1d5y_A ROB transcription facto 37.4 74 0.0025 30.6 7.5 34 281-314 6-39 (292)
428 1iuf_A Centromere ABP1 protein 37.3 16 0.00056 32.4 2.4 43 496-540 11-60 (144)
429 2jrt_A Uncharacterized protein 37.3 13 0.00045 31.2 1.7 26 515-540 48-73 (95)
430 1lj9_A Transcriptional regulat 37.1 1.4E+02 0.0047 25.1 8.4 62 376-446 5-66 (144)
431 3r4k_A Transcriptional regulat 36.8 22 0.00075 34.7 3.5 35 504-538 9-43 (260)
432 2dms_A Homeobox protein OTX2; 36.8 39 0.0013 26.8 4.4 53 497-549 14-67 (80)
433 3lfp_A CSP231I C protein; tran 36.7 64 0.0022 26.0 5.9 70 423-505 14-89 (98)
434 3bja_A Transcriptional regulat 36.5 69 0.0024 26.7 6.3 24 423-446 47-70 (139)
435 2ovg_A Phage lambda CRO; trans 36.4 28 0.00097 27.1 3.4 20 518-537 15-34 (66)
436 1bl0_A Protein (multiple antib 36.3 28 0.00096 29.9 3.8 26 515-540 26-51 (129)
437 2dn0_A Zinc fingers and homeob 36.1 34 0.0012 26.9 3.9 51 497-547 15-66 (76)
438 1uhs_A HOP, homeodomain only p 36.1 89 0.0031 24.1 6.4 52 497-548 8-61 (72)
439 2yu3_A DNA-directed RNA polyme 35.8 47 0.0016 28.0 4.9 47 494-545 32-78 (95)
440 1eto_A FIS, factor for inversi 35.6 37 0.0013 28.5 4.3 21 517-537 72-92 (98)
441 2p8t_A Hypothetical protein PH 35.6 34 0.0012 32.7 4.5 44 497-546 13-56 (200)
442 2k02_A Ferrous iron transport 35.6 38 0.0013 28.0 4.2 24 423-446 16-39 (87)
443 2dmt_A Homeobox protein BARH-l 35.4 28 0.00095 27.8 3.3 51 497-547 24-75 (80)
444 2da3_A Alpha-fetoprotein enhan 35.1 22 0.00076 28.1 2.7 50 498-547 25-75 (80)
445 1q06_A Transcriptional regulat 35.0 18 0.00062 31.9 2.3 25 517-541 1-25 (135)
446 3s2w_A Transcriptional regulat 34.9 89 0.003 27.1 7.0 64 374-446 24-87 (159)
447 2k4b_A Transcriptional regulat 34.9 12 0.0004 31.6 1.0 46 492-540 28-77 (99)
448 3bj6_A Transcriptional regulat 34.7 1.2E+02 0.004 25.8 7.7 24 423-446 54-77 (152)
449 4dyq_A Gene 1 protein; GP1, oc 34.5 30 0.001 30.6 3.8 33 504-540 20-53 (140)
450 1puf_A HOX-1.7, homeobox prote 34.4 56 0.0019 25.7 5.0 52 497-548 20-72 (77)
451 2cra_A Homeobox protein HOX-B1 34.2 22 0.00077 27.5 2.5 50 497-546 14-64 (70)
452 1b8i_A Ultrabithorax, protein 34.2 42 0.0014 26.8 4.2 52 496-547 26-78 (81)
453 3mq0_A Transcriptional repress 34.1 20 0.00068 35.4 2.7 25 514-538 43-67 (275)
454 2gxg_A 146AA long hypothetical 34.1 1.4E+02 0.0047 25.1 7.9 25 422-446 49-73 (146)
455 2hi3_A Homeodomain-only protei 34.1 96 0.0033 24.0 6.3 52 497-548 9-62 (73)
456 2nnn_A Probable transcriptiona 33.7 1.6E+02 0.0053 24.4 8.2 62 375-446 14-75 (140)
457 2dmp_A Zinc fingers and homeob 33.2 53 0.0018 26.8 4.8 51 497-547 20-71 (89)
458 2ly9_A Zinc fingers and homeob 33.0 37 0.0013 26.4 3.6 54 497-550 13-67 (74)
459 2pjp_A Selenocysteine-specific 33.0 73 0.0025 27.2 5.9 26 515-540 19-44 (121)
460 3pxp_A Helix-turn-helix domain 32.9 29 0.001 34.9 3.7 25 515-539 24-48 (292)
461 3df8_A Possible HXLR family tr 32.8 40 0.0014 28.4 4.1 23 516-538 40-65 (111)
462 3hot_A Transposable element ma 32.8 40 0.0014 33.4 4.8 36 501-540 11-53 (345)
463 3cjn_A Transcriptional regulat 32.8 96 0.0033 26.8 6.9 63 375-446 27-89 (162)
464 2hr3_A Probable transcriptiona 32.7 1.9E+02 0.0064 24.3 8.6 24 423-446 50-73 (147)
465 3t72_q RNA polymerase sigma fa 32.6 1.2E+02 0.0041 25.2 7.0 25 422-446 38-62 (99)
466 2lnb_A Z-DNA-binding protein 1 32.6 38 0.0013 27.7 3.6 30 514-547 32-61 (80)
467 2lk2_A Homeobox protein TGIF1; 32.6 1E+02 0.0034 25.6 6.3 54 496-549 11-68 (89)
468 1u8b_A ADA polyprotein; protei 32.5 78 0.0027 27.0 6.1 25 515-539 92-116 (133)
469 2r5y_A Homeotic protein sex co 32.1 64 0.0022 26.0 5.1 51 496-546 34-85 (88)
470 3hh0_A Transcriptional regulat 32.1 22 0.00076 31.9 2.4 27 515-541 3-29 (146)
471 1z6r_A MLC protein; transcript 31.7 61 0.0021 33.2 6.1 38 502-542 19-56 (406)
472 3ivp_A Putative transposon-rel 31.6 89 0.003 26.3 6.2 79 423-508 25-105 (126)
473 3cta_A Riboflavin kinase; stru 31.6 26 0.00088 33.3 3.0 28 512-539 23-50 (230)
474 1c9b_A General transcription f 31.6 3E+02 0.01 25.2 14.5 34 515-548 158-191 (207)
475 3k69_A Putative transcription 31.3 33 0.0011 31.2 3.5 29 514-546 26-54 (162)
476 3u1d_A Uncharacterized protein 30.9 62 0.0021 29.5 5.2 45 493-538 22-68 (151)
477 2m0c_A Homeobox protein arista 30.7 50 0.0017 25.6 4.1 51 497-547 16-67 (75)
478 1x3u_A Transcriptional regulat 30.6 95 0.0032 23.6 5.7 27 421-447 29-55 (79)
479 3g3z_A NMB1585, transcriptiona 30.4 2.1E+02 0.0073 23.9 8.6 24 423-446 45-68 (145)
480 3ech_A MEXR, multidrug resista 30.4 1.7E+02 0.0059 24.5 8.0 24 423-446 51-74 (142)
481 1mnm_C Protein (MAT alpha-2 tr 30.3 57 0.002 26.3 4.5 50 496-545 33-86 (87)
482 1s3j_A YUSO protein; structura 30.3 1.3E+02 0.0046 25.5 7.3 24 423-446 51-74 (155)
483 2heo_A Z-DNA binding protein 1 30.1 50 0.0017 25.3 3.9 27 420-446 22-48 (67)
484 4a5n_A Uncharacterized HTH-typ 29.9 43 0.0015 29.5 3.9 45 490-537 16-61 (131)
485 2z9m_A Response regulator YYCF 29.7 88 0.003 26.4 5.8 50 496-546 36-90 (120)
486 2qww_A Transcriptional regulat 29.6 1.1E+02 0.0037 26.1 6.6 24 423-446 55-78 (154)
487 2da5_A Zinc fingers and homeob 29.6 54 0.0018 25.8 4.1 51 497-547 14-65 (75)
488 1tc3_C Protein (TC3 transposas 29.1 82 0.0028 21.0 4.6 24 424-447 22-45 (51)
489 1hsj_A Fusion protein consisti 29.0 43 0.0015 35.0 4.4 53 486-539 389-443 (487)
490 2a61_A Transcriptional regulat 28.7 89 0.0031 26.3 5.8 24 423-446 47-70 (145)
491 3cdh_A Transcriptional regulat 28.7 85 0.0029 26.9 5.7 24 423-446 57-80 (155)
492 2zhg_A Redox-sensitive transcr 28.3 27 0.00094 31.6 2.4 27 515-541 10-36 (154)
493 1bw5_A ISL-1HD, insulin gene e 28.2 42 0.0014 25.5 3.1 49 497-545 10-59 (66)
494 1d5y_A ROB transcription facto 28.2 1.7E+02 0.006 27.9 8.4 36 410-445 6-41 (292)
495 3gpv_A Transcriptional regulat 28.1 24 0.00081 31.7 1.9 26 516-541 16-41 (148)
496 1bl0_A Protein (multiple antib 27.8 98 0.0033 26.3 5.8 41 339-379 22-62 (129)
497 2vi6_A Homeobox protein nanog; 27.7 47 0.0016 24.9 3.3 50 496-545 9-59 (62)
498 2l7z_A Homeobox protein HOX-A1 27.5 51 0.0017 25.7 3.6 52 497-548 14-66 (73)
499 1ku3_A Sigma factor SIGA; heli 27.3 59 0.002 24.8 3.9 25 422-446 29-53 (73)
500 2eth_A Transcriptional regulat 27.3 1.5E+02 0.005 25.4 7.0 24 423-446 58-81 (154)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=6.5e-55 Score=468.70 Aligned_cols=315 Identities=31% Similarity=0.569 Sum_probs=284.3
Q ss_pred CCChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhCCCCcHHHHHH---
Q 008556 244 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 302 (561)
Q Consensus 244 ~~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~i~~~~~le~~~~------------------~l~~~~g~~pt~~ewA~--- 302 (561)
...|+++.||++|+++|+||++||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 356899999999999999999999999999998754432211 11223567788888743
Q ss_pred ---------HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 008556 303 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 373 (561)
Q Consensus 303 ---------a~g~~~~eL~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rF 373 (561)
+++++..+|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCc
Q 008556 374 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 451 (561)
Q Consensus 374 STYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~ 451 (561)
+|||+||||+.|.++|++++|++|+|.|+...+++++++.+.+.+.+||.|+.++||+.+| +++++|..++......+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred cCCCCCCCCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHH
Q 008556 452 SMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 531 (561)
Q Consensus 452 SLD~~v~~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISre 531 (561)
|+|.+++++++..+.+++.+....+|++.+....+...|..+|..||++||.||.+||||+||+++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999887766677888877665678888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 008556 532 RVRQLESRALYRLK-QSLGGKASYGYAD 558 (561)
Q Consensus 532 rVRqie~RALkKLR-~~l~~~~l~~yld 558 (561)
||||+++||++||| ..+....+++|++
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 7888888999874
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=4.8e-55 Score=469.47 Aligned_cols=311 Identities=33% Similarity=0.585 Sum_probs=276.3
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hCCCCcHHH----
Q 008556 245 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ---------------------FGREPTLIE---- 299 (561)
Q Consensus 245 ~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~i~~~~~le~~~~~l~~~---------------------~g~~pt~~e---- 299 (561)
..|+++.||++|+++|+||++||++|+++|+.+..+.. .|... .++.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP 153 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTT
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhh
Confidence 56899999999999999999999999999998654332 22222 234555443
Q ss_pred -----HHH---HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCC
Q 008556 300 -----WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 371 (561)
Q Consensus 300 -----wA~---a~g~~~~eL~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~ 371 (561)
|+. ++++++.+|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~ 233 (423)
T 2a6h_F 154 KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF 233 (423)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred hhhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 332 356778889999998999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcCC
Q 008556 372 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRM 449 (561)
Q Consensus 372 rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~ 449 (561)
+|+|||+||||+.|.++|++++|+||+|.|+...+++++++.+.+.+.+||.|+.++||+.+| +++++|..++.....
T Consensus 234 ~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~ 313 (423)
T 2a6h_F 234 KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 313 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999998889
Q ss_pred CccCCCCCCCCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCC
Q 008556 450 PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 529 (561)
Q Consensus 450 ~~SLD~~v~~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGIS 529 (561)
++|+|.+++++++..+.+++.+....+|++.+....+...|..+|..||++||.||.+||||+||+++|++|||+.||||
T Consensus 314 ~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS 393 (423)
T 2a6h_F 314 PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVT 393 (423)
T ss_dssp CEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSC
T ss_pred CcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcC
Confidence 99999999877777788888877666888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 008556 530 KERVRQLESRALYRLK-QSLGGKASYGYAD 558 (561)
Q Consensus 530 rerVRqie~RALkKLR-~~l~~~~l~~yld 558 (561)
++||||++.+|++||| ..+....+++|++
T Consensus 394 ~erVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 394 RERIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 9999999999999999 8888888999874
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=6.6e-42 Score=382.91 Aligned_cols=252 Identities=34% Similarity=0.668 Sum_probs=237.0
Q ss_pred CHHHHHHHHhhcH-HH---HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHH
Q 008556 307 SCRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 382 (561)
Q Consensus 307 ~~~eL~~~l~~G~-~A---re~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIR 382 (561)
+...|+.+++.|+ .| ++.||..|+++|+++|++|.+++.+++||+||||||||+++++||+.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 3456777777666 66 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCC
Q 008556 383 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 462 (561)
Q Consensus 383 qaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~ 462 (561)
|.|.++++++.+++|+|.|+...+++++++...+.+++||.||.+|||+.+|+++++++.++.....++|++.+++++++
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred chhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 463 TTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 463 ~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
..+.+++.+....+|++.+...++...|..+|..||+++|.||.||||+++++++|++|||+.||||++||+++++||++
T Consensus 517 ~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~ 596 (613)
T 3iyd_F 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 596 (613)
T ss_dssp CCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHT
T ss_pred ccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 78888888877778998888888888899999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHhhcCchhhhhh
Q 008556 543 RLKQSLGGKASYGYAD 558 (561)
Q Consensus 543 KLR~~l~~~~l~~yld 558 (561)
+||+++....++.|++
T Consensus 597 kLR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 597 KLRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTTSCSSSCSSTTCC-
T ss_pred HhhCcchhhHHHHHhc
Confidence 9999999999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=2.5e-36 Score=302.55 Aligned_cols=209 Identities=33% Similarity=0.577 Sum_probs=132.2
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHh--h-----------------------hhCCCCcHH
Q 008556 245 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 298 (561)
Q Consensus 245 ~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~i~~~~~-le~~~~~l~--~-----------------------~~g~~pt~~ 298 (561)
..|+++.||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 57999999999999999999999999999999765 333322110 0 024689999
Q ss_pred HHHHHccCC----HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchh
Q 008556 299 EWAKAIGLS----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 374 (561)
Q Consensus 299 ewA~a~g~~----~~eL~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFS 374 (561)
+||.+.|++ ...|...+++|+.|+++||..|+++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 999998885 3456777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCcc
Q 008556 375 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 452 (561)
Q Consensus 375 TYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~S 452 (561)
||++||||++|.++++++.+.+++|.++...++++.++.+.+...+++.||.+|||+.|| +++.+|...+...+..+|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999988887776
Q ss_pred C
Q 008556 453 M 453 (561)
Q Consensus 453 L 453 (561)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.98 E-value=9e-32 Score=261.56 Aligned_cols=222 Identities=22% Similarity=0.304 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc
Q 008556 319 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 395 (561)
Q Consensus 319 ~~Are~LI~~nlrLV~sIArrY~---~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~ 395 (561)
..|++.|+..|.++|+.+|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||++.|.++++++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 46899999999999999999998 6789999999999999999999999999999999999999999999999876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcC--CCccCCCCCCCCCCchhhhhcccCC
Q 008556 396 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR--MPLSMQQPVWADQDTTFQEITADTG 473 (561)
Q Consensus 396 IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~--~~~SLD~~v~~d~~~~l~d~l~d~~ 473 (561)
+.|.+.....++++++...+....|+.|+.+++|..+|++++++..++.... ...|++.+..++++.. .+. .++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 5678888889999999999999999999999999999999999998876432 2345554332221112 233 222
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008556 474 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 550 (561)
Q Consensus 474 ~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 550 (561)
..+|++.+...+....|..+|..||+++|.||.++|+ +++|++|||+.||||.++|++++++|+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3467778888888889999999999999999999998 899999999999999999999999999999998754
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=1.3e-31 Score=260.22 Aligned_cols=217 Identities=26% Similarity=0.439 Sum_probs=52.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 008556 317 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTI 396 (561)
Q Consensus 317 ~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~I 396 (561)
++..|++.|+..|.++|+++|++|.++..+++||+|||+++||+++++||+.+|.+|.||+++|+++.+.++++++. .+
T Consensus 25 gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~ 103 (243)
T 1l0o_C 25 GDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TV 103 (243)
T ss_dssp ---------------------------------------------------------------------------CC-CC
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 34589999999999999999999999999999999999999999999999999889999999999999999999887 78
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCC--chhhhhcccCCC
Q 008556 397 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD--TTFQEITADTGV 474 (561)
Q Consensus 397 RlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~--~~l~d~l~d~~~ 474 (561)
++|.++....++++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----- 178 (243)
T 1l0o_C 104 KVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQI----- 178 (243)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC---------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhcc-----
Confidence 999999999999999999999999999999999999999999998888776667888877543322 2223322
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 475 EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 475 ~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
|+..+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||.++|++++++|+++||
T Consensus 179 --~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 179 --ADADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -----------------------------------------------------------------------
T ss_pred --CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 2223344455677899999999999999999998 8999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.89 E-value=1.3e-22 Score=191.79 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=136.4
Q ss_pred HHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHH
Q 008556 308 CRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 386 (561)
Q Consensus 308 ~~eL~~~l~~G-~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~ 386 (561)
+.+|+..++.| ..|++.|+..|.+.|+.+|++|.+ ..+++|++||+++++|+++++|++.. .|.+|++.++++.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45566666555 599999999999999999999999 89999999999999999999999875 499999999999999
Q ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCchhh
Q 008556 387 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 466 (561)
Q Consensus 387 ~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~ 466 (561)
++++++.+..+. .++. .... ..++.. ..
T Consensus 87 d~~R~~~~~~~~----------------------------~~~~-----------~~~~-----~~~~~~------~~-- 114 (194)
T 1or7_A 87 NYLVAQGRRPPS----------------------------SDVD-----------AIEA-----ENFESG------GA-- 114 (194)
T ss_dssp HHHHHHTTCCTH----------------------------HHHH-----------HHHH-----HSCCSS------CC--
T ss_pred HHHHHHhccCcc----------------------------cccc-----------cccc-----cccccc------cc--
Confidence 999876543211 0000 0000 000000 00
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 467 EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 467 d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.+. .+|++.+...+....|..+|..||+++|+||.|+|. +++|++|||+.||||..+|++++.||+++||+
T Consensus 115 --~~~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 115 --LKEI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp ------------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred --ccCC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0010 123322333455667889999999999999999998 89999999999999999999999999999999
Q ss_pred Hhhc
Q 008556 547 SLGG 550 (561)
Q Consensus 547 ~l~~ 550 (561)
.+..
T Consensus 187 ~l~~ 190 (194)
T 1or7_A 187 KVQP 190 (194)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8753
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.88 E-value=3.5e-23 Score=194.30 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=143.6
Q ss_pred CCHHHHHHH-Hhhc-HHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 008556 306 LSCRDLKSE-LHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 383 (561)
Q Consensus 306 ~~~~eL~~~-l~~G-~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRq 383 (561)
+++.+|+.. +..| ..|++.|+..|.+.|+.+|+++.++..+++|++||+++++|+++++|++..| .|.+|++.++++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 566777777 6555 5999999999999999999999998899999999999999999999999876 799999999999
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCc
Q 008556 384 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 463 (561)
Q Consensus 384 aI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~ 463 (561)
.+.+++++..+... ++. ..
T Consensus 90 ~~~d~~R~~~~~~~-------------------------------------------------------~~~------~~ 108 (184)
T 2q1z_A 90 RRIDGLRKDRQPEP-------------------------------------------------------EDL------FW 108 (184)
T ss_dssp SCCTTTCSSSCCCC-------------------------------------------------------CCC------CC
T ss_pred HHHHHHHhhccccc-------------------------------------------------------ccc------cc
Confidence 99888876542110 000 00
Q ss_pred hhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008556 464 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 543 (561)
Q Consensus 464 ~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 543 (561)
..+ ...+|++.+...+....|..+|..||+++|+||.++|. +++|++|||+.||||..+|++++.||+++
T Consensus 109 -----~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 109 -----GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPLGTIKSRIRLALDR 178 (184)
T ss_dssp -----CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCCHHHHHHHHHHHHH
T ss_pred -----cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 011 12357777777777888999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHh
Q 008556 544 LKQSL 548 (561)
Q Consensus 544 LR~~l 548 (561)
||+.+
T Consensus 179 Lr~~l 183 (184)
T 2q1z_A 179 LRQHM 183 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=2.8e-21 Score=176.56 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCC
Q 008556 344 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 423 (561)
Q Consensus 344 g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~ 423 (561)
|.+++|++|||++++|+++.+||+.+ .+|.||+++++++.+.++++++.+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 6899999999999999999886533222210
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCchhh----hhcccCCCCChhHHHHHHHHHHHHHHHHh-cCC
Q 008556 424 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ----EITADTGVEIPDISVQKQLMRQHVRNLLT-LLN 498 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~----d~l~d~~~~~pee~le~~e~~e~L~~aL~-~L~ 498 (561)
..++.+.+..++....+. +.+.+ ...+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKS-SESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 001111111111111111 11111 22367777888888889999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 552 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 552 (561)
+++|.||. +|. +|+|++|||+.||||..+|++++.||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 676 89999999999999999999999999999999987543
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.71 E-value=1e-19 Score=168.69 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchh
Q 008556 322 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 401 (561)
Q Consensus 322 re~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~ 401 (561)
++.|+..|.+.|+.+|.++.++..+++|++||+++++|+++++|++.. .|.+|++.++++.+.+++++..
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~-------- 72 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGE-------- 72 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTS--------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccC--------
Confidence 567899999999999999999989999999999999999999999763 5999999999999998876421
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCchhhhhcccCCCCChhHHH
Q 008556 402 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 481 (561)
Q Consensus 402 ~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~l~d~~~~~pee~l 481 (561)
.. +.+. + .
T Consensus 73 ---------------------~~-----------------------------~~~~--e-----------~--------- 80 (157)
T 2lfw_A 73 ---------------------AQ-----------------------------TSQS--D-----------A--------- 80 (157)
T ss_dssp ---------------------CC-----------------------------CCCC--S-----------C---------
T ss_pred ---------------------cc-----------------------------cCCc--c-----------h---------
Confidence 00 0000 0 0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008556 482 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 552 (561)
Q Consensus 482 e~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 552 (561)
.+....|..+|..||+++|+||.|+|. +|+|++|||+.||||..+|++.+.||+++||+.+....
T Consensus 81 --~~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 81 --EGTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp --SSSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 001124667899999999999999998 89999999999999999999999999999999886543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.64 E-value=2.4e-16 Score=163.96 Aligned_cols=85 Identities=41% Similarity=0.902 Sum_probs=76.8
Q ss_pred HHHHHHHhhc-H---HHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q 008556 309 RDLKSELHSG-N---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 384 (561)
Q Consensus 309 ~eL~~~l~~G-~---~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqa 384 (561)
..|..+++.| . .|++.||..|+++|+++|++|.+++.+++||+||||||||+++++|++.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 3455555544 4 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 008556 385 IRKAIFQHS 393 (561)
Q Consensus 385 I~~~Ir~~s 393 (561)
|.++++++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999998865
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.55 E-value=2.9e-15 Score=152.20 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=118.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 008556 317 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTI 396 (561)
Q Consensus 317 ~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~I 396 (561)
++..+++.|+..|.+.++.+|++|.++..+.+|++||.|+.+|+..++|++. ..|.+|++.+++|.+.+++++..
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~--- 92 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLE--- 92 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccc---
Confidence 3347999999999999999999999999999999999999999999999975 36999999999998877654210
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCchhhhhcccCCCCC
Q 008556 397 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEI 476 (561)
Q Consensus 397 RlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~l~d~~~~~ 476 (561)
. + ... +. .
T Consensus 93 --------------------------~--------------------------------~--~~~---------~~---~ 100 (286)
T 3n0r_A 93 --------------------------V--------------------------------G--HDQ---------GL---H 100 (286)
T ss_dssp -----------------------------------------------------------C--CCC---------CC---C
T ss_pred --------------------------c--------------------------------C--CCc---------cc---c
Confidence 0 0 000 00 0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 477 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 477 pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
....|..+|..||+++|+||.|+|. +++|++|||+.+|+|..+|+....+|+++|+..+.
T Consensus 101 ---------~~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 ---------AGDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ---------TTSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------hHHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0124788999999999999999998 99999999999999999999999999999987654
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.54 E-value=2.4e-14 Score=124.33 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 008556 480 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 559 (561)
Q Consensus 480 ~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l~~yldl 559 (561)
.+...++...|..+|+.||++||+||.+|||++|++++|++|||+.||||+++|++++.+|+++||..+....++.|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999988999999999999999999999999999999999999999999763
No 14
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.33 E-value=1.5e-12 Score=109.50 Aligned_cols=72 Identities=38% Similarity=0.713 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 008556 488 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 559 (561)
Q Consensus 488 e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l~~yldl 559 (561)
..|..+|+.||+++|+||.++|+|++++++|++|||+.||||.++|++++.+|+++||..+....+..|+..
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 357889999999999999999999988999999999999999999999999999999999988888888754
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.30 E-value=8.4e-13 Score=107.22 Aligned_cols=68 Identities=32% Similarity=0.627 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHhhcCchhhhh
Q 008556 490 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK-QSLGGKASYGYA 557 (561)
Q Consensus 490 L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR-~~l~~~~l~~yl 557 (561)
|..+|+.||++||+||.++|+|+|++++|++|||+.||+|.++|++++.+|+++|| ..+....++.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999998889999999999999999999999999999999 888888888775
No 16
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.29 E-value=1.4e-11 Score=104.33 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008556 474 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 552 (561)
Q Consensus 474 ~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 552 (561)
..+|++.++..+....|..+|..||+++|+||.|+|. +++|++|||+.||||..+|++++.||+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3478888999999999999999999999999999998 89999999999999999999999999999999987654
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.27 E-value=1.8e-12 Score=103.79 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhh
Q 008556 493 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 558 (561)
Q Consensus 493 aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l~~yld 558 (561)
+|+.||++||+||.++|||++.+++|++|||+.||||.++|++++.+|++|||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999887789999999999999999999999999999999998888887764
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=6.8e-10 Score=88.20 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008556 486 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 553 (561)
Q Consensus 486 ~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l 553 (561)
....|..+|..||++++.||.++|. +++|++|||+.||+|..+|+++.++|+++||..+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4457888999999999999999998 899999999999999999999999999999998876543
No 19
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2.1e-09 Score=93.27 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=69.2
Q ss_pred HHHHHHh-hcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHH
Q 008556 310 DLKSELH-SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 388 (561)
Q Consensus 310 eL~~~l~-~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~ 388 (561)
.|...+. ++..|++.|+..|.+.++.+|.++ ++..+.+|++||+++.+|+.+.+|++. ..|.+|++..+++.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 3444444 455999999999999999999999 888899999999999999999999974 369999999999999999
Q ss_pred HHhccc
Q 008556 389 IFQHSR 394 (561)
Q Consensus 389 Ir~~sr 394 (561)
++++.+
T Consensus 90 ~R~~~~ 95 (112)
T 2o7g_A 90 IRHVRS 95 (112)
T ss_dssp TC----
T ss_pred HHHhhc
Confidence 987654
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.84 E-value=4.1e-09 Score=87.33 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=67.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcc
Q 008556 317 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 393 (561)
Q Consensus 317 ~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~s 393 (561)
++..+++.|+..|.+.++.+|.++.++..+.+|++||+++.+|+.+++|++. ..|.+|++.++++.+.++++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 4559999999999999999999999998999999999999999999999975 36999999999999999987654
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.83 E-value=1.3e-08 Score=89.84 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008556 481 VQKQLMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 553 (561)
Q Consensus 481 le~~e~~e~L~~aL-~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l 553 (561)
++..+....+..++ ..||+++|+||.++|. +++|++|||+.||||..+|+.+++||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455566788999 9999999999999998 899999999999999999999999999999998876544
No 22
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=1.4e-11 Score=123.11 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=109.6
Q ss_pred HHHHHHhhcH-HHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH----HHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q 008556 310 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 384 (561)
Q Consensus 310 eL~~~l~~G~-~Are~LI~~nlrLV~sIArrY~~~g~~~eDLI----QEG~IGLirAiekFDp~kG~rFSTYA~~wIRqa 384 (561)
.|..+++.++ .+.+.+...+.+++..+.+..........|+. ||.++.+|+.+..|++.. .|.+|++..+++.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 4556666665 78999999999999999888766667778886 999999999999998654 5888877655543
Q ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCch
Q 008556 385 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 464 (561)
Q Consensus 385 I~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~ 464 (561)
+.++.+... +...+.....
T Consensus 164 ~~d~~r~~~-----------------------------------------------------------~~~~~~~~~~-- 182 (258)
T 3clo_A 164 SADQRPEQG-----------------------------------------------------------IYATITQMER-- 182 (258)
T ss_dssp CSCCCCCSS-----------------------------------------------------------CCCEEEETTT--
T ss_pred HcchhhhhH-----------------------------------------------------------HHHHHHhhcc--
Confidence 332211000 0000000000
Q ss_pred hhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008556 465 FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 544 (561)
Q Consensus 465 l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKL 544 (561)
.+... .. .+..++..||+++|+||.|++ +|+|.+|||+.||||..+|+.+..||++||
T Consensus 183 -~~~~~-----~~-----------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 183 -GEVET-----LS-----------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp -TEEEE-----CC-----------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -ccccc-----ch-----------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 00000 00 145567899999999999984 799999999999999999999999999999
Q ss_pred HHH
Q 008556 545 KQS 547 (561)
Q Consensus 545 R~~ 547 (561)
|..
T Consensus 241 ~~~ 243 (258)
T 3clo_A 241 SVG 243 (258)
T ss_dssp TCS
T ss_pred cCC
Confidence 864
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.69 E-value=2.5e-08 Score=88.17 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=57.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008556 487 RQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 553 (561)
Q Consensus 487 ~e~L~~aL-~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~l 553 (561)
...+..++ ..||+++++||.++|. +|+|++|||+.+|||..+|+....+|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44677888 8999999999999998 899999999999999999999999999999998876544
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.51 E-value=3.8e-08 Score=83.04 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 484 QLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 484 ~e~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
......+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+.++.++++||+..
T Consensus 17 ~~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 17 GSHMKKRAELYEMLTEREMEILLLI-A----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp --------CTGGGCCSHHHHHHHHH-H----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3345568889999999999999995 4 799999999999999999999999999999763
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.49 E-value=1.7e-07 Score=76.11 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 488 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 488 e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
..+..++..|+++|++||.++ . +++|.+|||+.||||..+|+++..++++||+.
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAV-V----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH-T----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 357788999999999999995 4 78999999999999999999999999999985
No 26
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.48 E-value=1.1e-07 Score=82.64 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=54.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhcccC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 486 MRQHVRNLL-TLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 486 ~~e~L~~aL-~~L~erER~VL~LRyGL~d---~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
..+.+..++ +.|+++|+.+|.+|||+.+ +.++|++|||+.+|||+.+|.++ +|+|++|...++
T Consensus 24 ~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 24 QNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 344567777 6799999999999999975 45699999999999999999999 999999887653
No 27
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.47 E-value=1.9e-07 Score=79.62 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 486 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 486 ~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
....|..++..|+++|++||.++ . +++|.+|||+.||||..+|+.++.++++||+..-.
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLL-S----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp ----------CCCHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 34567889999999999999997 4 79999999999999999999999999999986543
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.36 E-value=2.9e-07 Score=76.31 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 489 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 489 ~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
.+..++..|+++|++||.++ . +++|.+|||+.||||..+|+..+.++++||+...
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLI-A----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35677899999999999995 4 7899999999999999999999999999997643
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.19 E-value=1.4e-06 Score=69.51 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 490 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 490 L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+...+..|+++|++||.+. . +++|.+|||+.||+|..+|++...++++||+..
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-V----QDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCHHHHHHHHHH-H----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4456788999999999994 4 789999999999999999999999999999753
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.98 E-value=9.7e-06 Score=68.57 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=42.9
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 492 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 492 ~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
.....|+++|++||.+.+ +|+|.+|||+.||||..+|+....++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 346789999999999987 6899999999999999999999999999985
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.92 E-value=7.6e-06 Score=63.09 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
++|++|+.+ +. +|+|.+|||+.||||..+|+....++++||+.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999 55 79999999999999999999999999999975
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.86 E-value=1.9e-05 Score=68.09 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
..|+++|++||.+.+ +++|.+|||+.||||..+|+....++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999965 68999999999999999999999999999953
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.46 E-value=0.00017 Score=70.42 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+.+ +|+|.+|||++||||..||+....++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999964 79999999999999999999999999999953
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.44 E-value=0.00017 Score=70.30 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
.|+++|++||.+.+ +|+|.+|||++||||..+|+..+.++++||.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 7999999999999999999999999999994
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.27 E-value=0.0003 Score=69.01 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=42.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
..|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 469999999999974 7999999999999999999999999999984
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.17 E-value=0.00043 Score=69.27 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+.. +|+|.+|||++||||..||+..+.++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999985 79999999999999999999999999999853
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.91 E-value=0.0013 Score=47.26 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.++..+...|. +++|..|||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 478888866656565 6899999999999999999987654
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.50 E-value=0.0055 Score=53.00 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
.+++.-..|-.++|. +|+|..|||+.||||+.+|.+++.+|...+.
T Consensus 18 ~~~~~~~~~A~lyYv----~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 678888899999998 8999999999999999999999999988764
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.43 E-value=0.0065 Score=56.53 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 490 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 490 L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
+...+..|+++|++|+.+.. +++|.++||+.+|+|..+|+.+..++++||.
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34456689999999998864 6799999999999999999999999999985
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.29 E-value=0.0024 Score=47.94 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+++..+.|+.+ |. .++|..|||+.||||+.+|+.++.+|
T Consensus 17 ~~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34455666666 44 68999999999999999999887654
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.11 E-value=0.0095 Score=55.83 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=42.3
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
..|+++|++|+.+-. +++|.+|||+.+++|..+|+.+..+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999998865 6889999999999999999999999999994
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.80 E-value=0.012 Score=55.89 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=41.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
..|+++|++||.+-. +++|.+|||+.+++|..||+....+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998865 6799999999999999999999999999984
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.06 E-value=0.02 Score=54.26 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=42.0
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
...|+++|++|+.+-. .++|.+|||+.+++|..+|+....+.++||.
T Consensus 157 ~~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 157 YAKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HHTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3469999999998854 6899999999999999999999999998883
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.80 E-value=0.075 Score=50.86 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 486 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 486 ~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
........+..|++++++|+.+.. .+++.++||..||+|..+|+....++++||.
T Consensus 188 ~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 188 RRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344667889999999999999865 5799999999999999999999999999884
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.25 E-value=0.011 Score=65.91 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=13.0
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 008556 245 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 277 (561)
Q Consensus 245 ~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~i~~~ 277 (561)
.+||+++||++|++.||||+++|++|+++|..+
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g 126 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHh
Confidence 679999999999999999999999999999874
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.37 E-value=0.092 Score=42.76 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.++.||.+-.-...|++.|..|||+.+|||+.+|+++ |.+|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~----L~~L~~ 57 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34566766555544456899999999999999998765 555544
No 47
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.28 E-value=0.098 Score=48.95 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG---LSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG---ISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+-.- +.|+.+|.+|||+.++ +|..+|+....+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 599999999987543 2345699999999999 9999999999999999963
No 48
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.24 E-value=0.043 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+.|+.+ +. .+.|..+||+.+|||+.+|..++.+
T Consensus 12 ~~i~~l-~~----~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-LE----KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HH----TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HH----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555 43 5699999999999999999887543
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=92.94 E-value=0.11 Score=48.94 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|.+||.+-.- +.|+.+|.+|||+.+ ++|..+|+.+..+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 599999999987653 334569999999999 99999999999999999853
No 50
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=92.88 E-value=0.15 Score=48.61 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+-.- +.|..+|.+|||+.+ ++|..+|+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 599999999987653 334569999999999 99999999999999999953
No 51
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.77 E-value=0.16 Score=41.85 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 500 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 500 rER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.++.||.+-.....|+..|..|||+.||||+.+|++ +|.+|.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~----~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR----VLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 355666555444445789999999999999988865 5666654
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.71 E-value=0.13 Score=48.03 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+-.- +.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 599999999987542 2235599999999998 9999999999999999964
No 53
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.49 E-value=0.035 Score=54.95 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 008556 490 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRALYRLK 545 (561)
Q Consensus 490 L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG--ISrerVRqie~RALkKLR 545 (561)
+...+..|++.++. |...|| .+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566777777777 445666 7899999999999 999999999999988763
No 54
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=91.29 E-value=0.13 Score=48.43 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 546 (561)
.|+++|.+||.+-.- +.|..+|.+|||+.++ +|..+|+.+..+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 599999999987653 2334599999999998 9999999999999999974
No 55
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.97 E-value=0.27 Score=42.91 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.++..|...+. .|+|..+||+.||||+.+|+.+..+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777766665555 6799999999999999999988765
No 56
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.58 E-value=0.38 Score=46.12 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|.+||.+... +.|+..|.++|++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 599999999988653 446889999999999 78999999999999999964
No 57
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.57 E-value=0.22 Score=48.25 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGN-----IFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe-----~LGISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+-.- +.|..+|.+|||+ .++++..+|+....+.++||..
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 599999999998763 3356799999999 5888999999999999999863
No 58
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=90.51 E-value=0.24 Score=43.95 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=27.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRq 535 (561)
..|..| .+|+.+-. +++|+.|||+.+|+|..||.+
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH
Confidence 345666 67777754 579999999999999999965
No 59
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.49 E-value=0.42 Score=40.55 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.++..+|.-+...+. .++|..+||+.||||+.+|+.++.+.
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 355555554444444 67999999999999999999988764
No 60
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.44 E-value=0.24 Score=47.48 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
..+..+ |. .|+|..|||+.||||+.+|.+++..|.
T Consensus 15 ~ria~~-y~----~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-KN----DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-HH----TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-HH----cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 345555 65 789999999999999999999988764
No 61
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=89.53 E-value=0.11 Score=48.65 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 546 (561)
.|+++|++||.+-.- +.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 599999999987652 1224499999999999 9999999999999999974
No 62
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.00 E-value=0.77 Score=37.78 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=32.4
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
...|++.+..+|...+. .+.+.|..|||+.+|+|+.+|++++
T Consensus 16 ~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45789888887755432 1267999999999999999997644
No 63
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.65 E-value=0.65 Score=41.31 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
.++..+|.-|...+. .++|..+||+.||||+.+|+.++.+..
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555554444444 579999999999999999999887653
No 64
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.44 E-value=0.48 Score=44.67 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhcc--cCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 496 ~L~erER~VL~LRyGL--~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
.|+++|++|+..-..+ ..|.+.|.+|||+.||+|..+|++++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875322 23468999999999999988876543
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.27 E-value=0.52 Score=36.98 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
++..+.||.+--. ++.++|..|||+.+|+|+.+|.+ .++.|++
T Consensus 9 ~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~----~l~~L~~ 51 (67)
T 2heo_A 9 DNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQ----VLYRLKK 51 (67)
T ss_dssp CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred cHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4445556654321 23679999999999999888865 5566665
No 66
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.15 E-value=0.37 Score=39.95 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+.|..|||+.||||+.+|++++.+
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 499999999999999999887654
No 67
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.50 E-value=1.1 Score=39.04 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 492 NLLTLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 492 ~aL~~L~erER~VL~LRyGL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
...-.|++.+..|+..-.. .+.+ +|..|||+.+|+|+.+|.+ ++++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r----~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQR----SVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4456799999999876553 2234 8999999999999999964 5566654
No 68
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=87.27 E-value=0.58 Score=47.41 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 503 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 503 ~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
.|..++|. +++|.+|||+.||||+.+||+.+..+.+
T Consensus 12 ~ia~l~~~----~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYYE----QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46677776 7899999999999999999988776644
No 69
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.92 E-value=1.1 Score=36.76 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
.+.|..+||+.||||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999876543
No 70
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=85.98 E-value=1.4 Score=39.28 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|++.++.||.+-.. +...|..|||+.+|+|+.+|+++++
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 45 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3588999988875432 2579999999999999999976543
No 71
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=85.87 E-value=1.8 Score=40.06 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+..|++.|..||..-+... +.+.|..+||+.+|+++.+|.+++.+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344556667779999999988766321 25799999999999999999765443
No 72
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=85.77 E-value=2 Score=37.02 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCC---CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 488 QHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 488 e~L~~aL~~L~erER~VL~LRyGL~d~---e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|......|++.|+.|..+-.. .. ..+|..|||+..|+|..+|-+..+
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILA--HPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHH--CHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHH--ChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 45677788999999998775442 21 369999999999999999987654
No 73
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.77 E-value=3.7 Score=33.71 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
++....||.+- . .++|..|||+.+|+|+.+|++.+
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHHH
Confidence 45566666654 2 57999999999999999997654
No 74
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.48 E-value=1.4 Score=39.17 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|+.+++
T Consensus 2 ~ld~~d~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK--D-SRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp CCCHHHHHHHHHHHH--C-SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 378888888875432 2 569999999999999999976543
No 75
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.50 E-value=1.9 Score=38.50 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|+++++
T Consensus 4 ~ld~~~~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888875432 2 479999999999999999976543
No 76
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.25 E-value=3.1 Score=34.88 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 489 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 489 ~L~~aL~~L~-erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+..++..|. +....||.+-.. .++|..|||+.+|+|+.+|+++++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445555555 445566665432 568999999999999999976543
No 77
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.22 E-value=1.8 Score=32.61 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 516 PKS----LSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 516 ~~T----l~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+.| ..+||..+||++.+|++.... ...++..+
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 467 999999999999999999764 46666554
No 78
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.17 E-value=1.6 Score=35.62 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=23.6
Q ss_pred ccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 511 IEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 511 L~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
|..|+..|..+||+.||+++..|. |+|.+|.+
T Consensus 24 L~~~~~~Ta~~IAkkLg~sK~~vN----r~LY~L~k 55 (75)
T 1sfu_A 24 LNTNDYTTAISLSNRLKINKKKIN----QQLYKLQK 55 (75)
T ss_dssp SCTTCEECHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcchHHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444466899999999999987775 45555543
No 79
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=84.16 E-value=1.6 Score=38.18 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
|++.++.||..-.. +...|..|||+.+|+|+.+|++.++
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 66777888774321 2568999999999999999976443
No 80
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.12 E-value=2 Score=38.39 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.++.||.+-.. +...|+.|||+.+|+|+.+|++++++
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875432 25789999999999999999865443
No 81
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.00 E-value=1.8 Score=37.55 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. +. .|..|||+.+|+|+.+|++++.+
T Consensus 35 ~lt~~~~~iL~~l~~---~~-~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE---ES-LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTT---CC-CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 467777777765543 23 99999999999999999865443
No 82
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.95 E-value=3.9 Score=35.04 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+ ..|++.|..||..-+.- ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 20 STRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 34455555 35899999888776642 223799999999999999999765443
No 83
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=83.90 E-value=1.6 Score=38.10 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL-~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..|++.+..+|..-+.+ ..+.+.|..+||+.+|+|+.+|++++++
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 46888888777665433 2346899999999999999999765443
No 84
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=83.78 E-value=1.7 Score=38.75 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|+++++
T Consensus 4 ~ld~~~~~iL~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 4 ALDDIDRILVRELAA--D-GRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 488888888875432 2 479999999999999999976543
No 85
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.60 E-value=1.8 Score=39.18 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--N-GRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876432 2 4689999999999999999876443
No 86
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.15 E-value=3.5 Score=35.60 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+ ..|++.+..||..-+ +.+.|..|||+.+|+|+.+|..++.+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 344444 358999998887655 26899999999999999999765443
No 87
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.07 E-value=1.8 Score=39.33 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
|++.++.||.+--. +...|+.|||+.+|+|+.+|+..++
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~ 39 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQ 39 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56777888776432 2578999999999999999986543
No 88
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=82.95 E-value=1.9 Score=38.29 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
|++.++.||.+-. .+...|..|||+.+|+|+.+|+++++
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~ 39 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIK 39 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4667777776532 22479999999999999999976543
No 89
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.89 E-value=2.7 Score=36.45 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~~----L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+.. |++.|-.||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 34456666654 89999988887654 24799999999999999999865544
No 90
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.81 E-value=2.1 Score=35.30 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCHHHHH-HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 497 LNPKERC-IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 497 L~erER~-VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.++..+. |+.+... + .+.|..+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~--~-~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYEN--S-DGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTT--G-GGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--c-CCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 4444432 1 26899999999999999999987653
No 91
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=82.60 E-value=1.5 Score=47.45 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=60.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCC-CCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHH
Q 008556 423 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKE 501 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~-~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erE 501 (561)
..|..+||+.+|+|...|+.-+..-+..+.-...+. .+.+.. +......... .....+.+.+
T Consensus 32 ~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~----L~~~~~~~~~-------------~~~~~~~~~e 94 (485)
T 3sqn_A 32 QLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIR----LRNQGNAQTN-------------ELWSLFLPQS 94 (485)
T ss_dssp SCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEE----EEEC---CTH-------------HHHHHHGGGS
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEE----EecCcHHHHH-------------HHHHhcCHHH
Confidence 578999999999999999987765443321000110 011111 1111000110 0112234555
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
|....+.+.|.. ++.|+.++|+.+.||+.||.+-+++..+.|++
T Consensus 95 R~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 95 ISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp HHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 655555554443 58999999999999999998776665555543
No 92
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.48 E-value=0.72 Score=41.61 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
++..+|.-|...+- .++|..+||+.||||+.+|++++.+
T Consensus 26 ~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 26 LPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 55555544444443 5789999999999999999998765
No 93
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.45 E-value=1.8 Score=35.33 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.|++.+..||..-.. +.+.|..|||+.+|+|+.+|++++.
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 578888888876432 2579999999999999999976543
No 94
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.16 E-value=1.2 Score=37.49 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+.+....||...+- .|+.+|..|||+.+|||+.+|++ ++++|..
T Consensus 15 ~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~~----~L~~L~~ 59 (110)
T 1q1h_A 15 LLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVRK----KLNLLEE 59 (110)
T ss_dssp TSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHHH----HHHHHHH
T ss_pred HcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 345666677765432 34679999999999999999975 6666765
No 95
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=82.09 E-value=1.3 Score=37.38 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+|...|+.+... .+.|..+||+.+|||..||+..++.-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345555555443 34899999999999999999988753
No 96
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.82 E-value=1.9 Score=34.98 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 491 RNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 491 ~~aL~~L-~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..++..| ++.+..||.+- ..+.+.|..|||+.+|+|+.+|++.+.
T Consensus 15 ~~~~~~l~~~~~~~il~~l---~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 15 AALLKAMSHPKRLLILCML---SGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHCSHHHHHHHHHH---TTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHH---HhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3344444 35566666543 234589999999999999999976543
No 97
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=81.57 E-value=1.7 Score=35.40 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+.|.+|||+.||||..+||..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999986554
No 98
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=81.42 E-value=4.1 Score=33.68 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHhcCCH-HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 489 HVRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 489 ~L~~aL~~L~e-rER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+..++..|.. .-..||.+-. + .++|..||++.+|+|+.+|+++ |++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~~----L~~L~~ 62 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV---E-GEFSVGELEQQIGIGQPTLSQQ----LGVLRE 62 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH---T-CCBCHHHHHHHHTCCTTHHHHH----HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---h-CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34455555554 4444544432 2 4699999999999999999764 455544
No 99
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=81.33 E-value=2.3 Score=36.91 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQ 535 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d--~e~~Tl~EIAe~LGISrerVRq 535 (561)
-+++.|+.-|..|+.+-. .+|+|+.||++.+|+|..+|.+
T Consensus 36 L~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 36 VCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 367777666655544221 1569999999999999999965
No 100
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=81.27 E-value=2.3 Score=39.30 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.|++.++.||.+-.. + ...|+.|||+.+|+|+.+|++.++
T Consensus 24 ~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588889988876432 2 479999999999999999986543
No 101
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=81.22 E-value=4.7 Score=34.60 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|..||..-+.- ++++.|..|||+.+|+++.+|.+++.+
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~~-~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYAH-QQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHHS-TTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 3445555553 5899999998876642 225899999999999999999765544
No 102
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.15 E-value=4.6 Score=34.44 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+|+.+|.+++.+
T Consensus 15 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 15 RVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334455553 589999888876553 26799999999999999999765443
No 103
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.12 E-value=4.6 Score=33.06 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 489 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 489 ~L~~aL~~L~-erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+..++..|. +....||.+- .+ .++|..|||+.+|+|+.+|++ .+++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L---~~-~~~~~~ela~~l~is~~tvs~----~L~~L~~ 62 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCML---HN-QELSVGELCAKLQLSQSALSQ----HLAWLRR 62 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHT---TT-SCEEHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH---hc-CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3445555554 4444555432 23 579999999999999999975 4555554
No 104
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=80.98 E-value=2.4 Score=35.35 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=27.8
Q ss_pred CHHHHHHHH-HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 498 NPKERCIVR-LRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 498 ~erER~VL~-LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+|....||. +.-. .++|..|||+.+|+|+.+|+++++
T Consensus 26 ~~~Rl~IL~~l~~~----~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 26 HPMRLKIVNELYKH----KALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp SHHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC----CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 466667773 3222 479999999999999999987654
No 105
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=80.64 E-value=5.7 Score=34.98 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 488 QHVRNLL---TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 488 e~L~~aL---~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
..+...+ ..|++.|..||..-+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444 3699999998877654 257999999999999999998765443
No 106
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.63 E-value=3.4 Score=34.57 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 490 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 490 L~~aL~~L~-erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+..++..|. +....||.+-. + .+.|..|||+.+|+|+.+|++++.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~---~-~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG---R-ADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---H-SCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 444455554 55556665432 2 469999999999999999976544
No 107
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=80.63 E-value=3.9 Score=34.70 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHHHhc-CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 490 VRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 490 L~~aL~~-L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+..++.. .++.+..||.+-.. .+.|+.|||+.+|+|+.+|.+.+++
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344433 35667777766543 4799999999999999999765443
No 108
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=80.54 E-value=1.7 Score=35.74 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhccc-CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~-d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|+.++..||...+.-. +|.+.|..|||+.+|+++.+|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 47888888887654322 234489999999999999999766543
No 109
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.44 E-value=4.5 Score=34.60 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. +.+.|..|||+.+|+|+.+|.+++.+
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 799999988876543 24799999999999999999765443
No 110
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.10 E-value=2.6 Score=38.82 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|++.++.||.+-.. + ...|..|||+.+|+|+.+|+++++
T Consensus 13 ~~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--D-ARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp -CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4578888888776432 2 468999999999999999986543
No 111
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=80.07 E-value=1 Score=42.20 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPK--SLSEVGNIFGLS-KERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~--Tl~EIAe~LGIS-rerVRqie~R 539 (561)
.|+++|++++..--.+-...++ |.+|+|+.+|++ +.+|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5888888776543221111356 999999999999 9999988763
No 112
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=79.98 E-value=5 Score=34.42 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccC---CCCCCHHHHHHHhCCCHHHHHHHHHH----HHHHHHHHhh
Q 008556 487 RQHVRNLLTLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESR----ALYRLKQSLG 549 (561)
Q Consensus 487 ~e~L~~aL~~L~erER~VL~LRyGL~d---~e~~Tl~EIAe~LGISrerVRqie~R----ALkKLR~~l~ 549 (561)
...|...+..|++.|+.|..+-. .. -..+|..|||+..|+|..+|-+..++ ...-||..+.
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil--~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFIL--NYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHH--HCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH--hCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34677888999999999987543 32 14799999999999999999766543 3444444443
No 113
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.73 E-value=3.4 Score=35.27 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 488 QHVRNLLT-LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 488 e~L~~aL~-~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444443 799999888876543 14799999999999999999765443
No 114
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=79.64 E-value=5.1 Score=34.45 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+...+ ..|++.+..|+.+-+. .+ .+.|..|||+.+|+|+.+|..++.
T Consensus 14 ~~~~~~~~~gl~~~~~~il~~L~~-~~-~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 14 LFSELAKIHGLNKSVGAVYAILYL-SD-KPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-CS-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHH-cC-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 3589999988877642 23 579999999999999999976543
No 115
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.36 E-value=11 Score=32.39 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=48.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCCCCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHH-
Q 008556 424 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER- 502 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~erER- 502 (561)
-+..+||+.+|++...|..++......-. .. .... | ..|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~-------~~---------~~gr--~-----------------~~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGT-------SK---------RAPR--R-----------------KALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTC-------CC---------CCCC--C-----------------CSSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCC-------cC---------CCCC--C-----------------CcCCHHHHH
Confidence 47899999999999999998875422100 00 0000 0 01222221
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHH
Q 008556 503 CIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESR 539 (561)
Q Consensus 503 ~VL~LRyGL~d~e~~Tl~EIAe~LG--ISrerVRqie~R 539 (561)
.|+.+.-. ..+|..+|+..|| +|..+|++++.+
T Consensus 68 ~i~~~~~~----~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 68 NVIRAASN----SCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHHHH----CCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 23333111 4589999999999 899999998875
No 116
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=79.31 E-value=2.1 Score=33.87 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|+++++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999875
No 117
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=78.61 E-value=1.7 Score=34.07 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie~R 539 (561)
+|++|||+.+|||+.+|+++++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48899999999999999999874
No 118
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.52 E-value=6.4 Score=34.45 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=37.1
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+ ..|++.+..||..-+. +.+.|..+||+.+|+++.+|.+++.+
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444 3589999888876543 35799999999999999999765544
No 119
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.40 E-value=5 Score=34.84 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+++.+-.-++... ++|.+|+|+.+|||+.+|+++++-
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 346666555555554 599999999999999999999874
No 120
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.36 E-value=5 Score=34.49 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.|..||..-+. .+.+.|..+||+.+|+|+.+|..++.+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 23 RAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 334455553 588889888876622 236899999999999999999765443
No 121
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.28 E-value=6.4 Score=34.40 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=37.0
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.+...+ ..|++.|-.||..-+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 29 ~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 29 FYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444 3589999888877653 267899999999999999998655443
No 122
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=78.27 E-value=3.5 Score=38.95 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+++.++.||.+-. + .+.|..|||+.+|+|+.+|++++.+
T Consensus 18 ~d~~~~~IL~~L~---~-~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---N-KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6788888887654 2 4799999999999999999876443
No 123
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=78.03 E-value=2.5 Score=31.91 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999999998863
No 124
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.02 E-value=6 Score=33.75 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|..||..-+. +.+.|..+||+.+|+++.+|.+++.+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 3445556663 589999988877553 24789999999999999999775544
No 125
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.01 E-value=5.8 Score=34.59 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|-.||..-+. .+.+.|..|||+.+|+++.+|.+++.+
T Consensus 24 ~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 24 VLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 3445555553 589999888876542 225689999999999999999865544
No 126
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=78.01 E-value=4.8 Score=32.05 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+.|..|||+.+|+|+.+|++.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999999976443
No 127
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.93 E-value=5.9 Score=34.32 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 488 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 488 e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
..+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 29 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 29 QRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 34555553 589999888876553 147999999999999999998755443
No 128
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=77.68 E-value=5.8 Score=34.62 Aligned_cols=48 Identities=4% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+. .|++.|..||..-+. ..+.|..+||+.+|+++.+|.+++.+
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 699999988877653 24699999999999999999775544
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=77.64 E-value=5.6 Score=34.54 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=30.2
Q ss_pred HHHHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 491 RNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 491 ~~aL~~L-~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..++..| ++....||.+-. + .+++..|||+.+|+|+.+|++.++
T Consensus 37 ~~~~kaL~~~~rl~IL~~L~---~-~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 37 AEFFAVLADPNRLRLLSLLA---R-SELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HHHHHHHCCHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3334333 455556666543 2 478999999999999999976543
No 130
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.61 E-value=2.7 Score=31.57 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998764
No 131
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.48 E-value=2.4 Score=31.46 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 132
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=77.34 E-value=2.7 Score=33.60 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..|+|+.+|||+.+|.++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 133
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=76.88 E-value=4.8 Score=34.83 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=38.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+...+...+. .|++.|-.||..-+ ...+.|..|||+.+|+++.+|.+++.+-
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~---~~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIE---NDEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSC---TTCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH---HcCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3344555553 58999988886544 2368999999999999999997655443
No 134
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=76.85 E-value=2.9 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 135
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.75 E-value=5.1 Score=35.43 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...|. .|+..|-.||.+-+.- .+.+.|..|||+.+|+++.+|.+++.+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~~-~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTFS-KSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHTS-GGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666664 5999999998776532 224689999999999999999766544
No 136
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=76.73 E-value=6.5 Score=34.14 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+ ..|++.+..||..-+. +.+.|..+||+.+|+++.+|.+++.+
T Consensus 28 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 28 AVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3589999888877653 24799999999999999999765443
No 137
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=76.71 E-value=4.2 Score=35.94 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 589999998877653 25789999999999999999765544
No 138
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.56 E-value=3.3 Score=31.91 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 139
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=76.43 E-value=3 Score=32.13 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5799999999999999999999863
No 140
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=76.37 E-value=2.2 Score=33.67 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4699999999999999999999863
No 141
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=76.16 E-value=2.7 Score=35.71 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.++++-
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 6799999999999999999999863
No 142
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=76.06 E-value=4.1 Score=34.43 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHHhcCCH-HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 490 VRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 490 L~~aL~~L~e-rER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+..++..|.. ....||.+-. + .++|..|||+.+|+|+.+|++. +++|++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~---~-~~~s~~eLa~~lgis~stvs~~----L~~L~~ 64 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA---Q-GERAVEAIATATGMNLTTASAN----LQALKS 64 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT---T-CCEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH---c-CCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3344444443 3345665432 2 5789999999999999999764 455554
No 143
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=76.02 E-value=3.6 Score=32.59 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999874
No 144
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=75.94 E-value=4.5 Score=35.32 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=36.6
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 488 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 488 e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+...+ ..|++.+..||..-+. +.+.|..+||+.+|+|+.+|.+++.+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 24 PEMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444 4799999988876553 24789999999999999999765543
No 145
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.88 E-value=2.8 Score=33.76 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|+|+.+|||+.+|+++++-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 146
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=75.74 E-value=2.4 Score=33.16 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|.++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999863
No 147
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=75.67 E-value=6.3 Score=34.40 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 487 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 487 ~e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
...+...+ ..|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34445554 3588998888876553 257999999999999999998755443
No 148
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.55 E-value=5.3 Score=34.89 Aligned_cols=47 Identities=9% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+ ..|++.|..||..-. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 26 ~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 26 LLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 358999988887652 26899999999999999999865544
No 149
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=75.54 E-value=2.5 Score=31.56 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999863
No 150
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.44 E-value=5 Score=36.00 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 799999998876543 14799999999999999999775543
No 151
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=75.37 E-value=3.1 Score=34.35 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|+.|+|+.+|||+.+|.++++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 152
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=75.19 E-value=7.3 Score=33.62 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.|++.+-.||..-+. +.+ |..+||+.+|+++.+|.+++.+-
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHH
Confidence 789999998887654 134 99999999999999997655443
No 153
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=75.15 E-value=1.7 Score=34.79 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|+.++|+.+|||+.+|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999998765
No 154
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=75.10 E-value=5 Score=34.63 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 344455553 589999988876553 15789999999999999999765544
No 155
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.02 E-value=4.9 Score=35.51 Aligned_cols=51 Identities=2% Similarity=-0.014 Sum_probs=38.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 589999888876553 25789999999999999999765544
No 156
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=74.93 E-value=3.3 Score=32.53 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++++|+.+|||+.+|+++++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 157
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=74.84 E-value=4.8 Score=34.91 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888776553 248999999999999999998665543
No 158
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.77 E-value=4.2 Score=30.50 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIF-----GLSKERVRQLES 538 (561)
Q Consensus 514 ~e~~Tl~EIAe~L-----GISrerVRqie~ 538 (561)
+...|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3689999999999 999999997776
No 159
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.44 E-value=7.9 Score=33.41 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 488 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 488 e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+...+ ..|++.|-.||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 18 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555 3589999888876543 14699999999999999999765443
No 160
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.40 E-value=7.2 Score=34.59 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=38.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|-.||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344555553 699999888876553 24799999999999999999765544
No 161
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=74.39 E-value=35 Score=28.08 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 411 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 411 ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
++..-+......+++.++||+.+|+++..+..+...
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334444455566789999999999999999988664
No 162
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=74.11 E-value=6.7 Score=33.81 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
++....||.+-.. + .++|..|||+.+|+|+.+|+++++
T Consensus 41 ~~~rl~IL~~L~~--~-~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 41 DENRAKITYALCQ--D-EELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp SHHHHHHHHHHHH--S-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--C-CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4555567665431 1 478999999999999999987654
No 163
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=73.81 E-value=2.9 Score=36.49 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL-~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
|++.+..+|..-+.+ ..+.+.|..+||+.+|||+.+|++++.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 344444444433322 2225799999999999999999865443
No 164
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=73.75 E-value=3.7 Score=32.12 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999873
No 165
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=73.70 E-value=4.4 Score=30.63 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFG--LSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LG--ISrerVRqie~R 539 (561)
.++|.+++|+.+| +|+.+|.++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5799999999999 999999999874
No 166
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=73.54 E-value=13 Score=33.72 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
++|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999995 56777765
No 167
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=73.50 E-value=4.3 Score=35.73 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 488 QHVRNLLT---LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 488 e~L~~aL~---~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
..+...+. .|++.|..||..-+. .+.+.|..+||+.+|+++.+|.+++.+-
T Consensus 33 ~~~~~~l~~~~~l~~~~~~iL~~L~~--~~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 33 GDLNRQLLDETGLSLAKFDAMAQLAR--NPDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHH--CTTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 34444443 699999998877642 2257999999999999999997755443
No 168
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=73.39 E-value=2.6 Score=32.95 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|+|+.+|||+.+|+++++-
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4699999999999999999999864
No 169
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=73.32 E-value=3 Score=31.96 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 170
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=73.29 E-value=2.2 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 171
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.19 E-value=4.9 Score=34.64 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=31.8
Q ss_pred cCCHHHH-HHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008556 496 LLNPKER-CIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRL 544 (561)
Q Consensus 496 ~L~erER-~VL~LRyGL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKL 544 (561)
.++..++ +|+.+.+. .+ .+..+||+.|||++.+|+.+.+..-..+
T Consensus 7 ~~t~e~K~~iv~~~~~----~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE----NPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHH----CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHH----CCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4666666 45555533 33 4556999999999999999987654443
No 172
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.17 E-value=4.6 Score=34.73 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. +.+.|..+||+.+|+|+.+|..++.+
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 588988888876553 24799999999999999999765443
No 173
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=73.07 E-value=11 Score=33.44 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d--~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
...+...|. .|++.|-.||..-+...+ +.++|..|||+.+|+++.+|..++.+-
T Consensus 19 ~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 19 GQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 344555563 589999888877654332 256899999999999999998766553
No 174
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=73.00 E-value=6 Score=34.04 Aligned_cols=50 Identities=4% Similarity=-0.041 Sum_probs=36.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.+..||..-+. ..+.|..+||+.+|+|+.+|.+++.+
T Consensus 15 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 15 DSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 344555553 588888888876553 24789999999999999999765444
No 175
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=72.81 E-value=8.8 Score=38.94 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=40.4
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 488 QHVRNL--LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 488 e~L~~a--L~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+.+.+. |+.||+.-+++-.+|.- ..+.|++|+|+.++||++.|..++.|-
T Consensus 233 ~~i~e~~Gl~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 233 ELIKENMGLENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp HHHHHHTCGGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 344444 47899999999999875 378999999999999999998765543
No 176
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=72.77 E-value=15 Score=33.93 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=34.2
Q ss_pred HhcCCHHHHHHHHH-----Hhcc-----cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRL-----RFGI-----EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 494 L~~L~erER~VL~L-----RyGL-----~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...+.++|-.-.+ ++|- .-.-+.|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45678888765444 4442 00146899999999999999995 56677765
No 177
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.56 E-value=3 Score=34.83 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|++.|..|+..-+.. ++++.+.+||++.+|++..+|..++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45777787787776632 23689999999999999999865443
No 178
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=72.49 E-value=5 Score=32.29 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..|+|+.+|||+.+|.++++.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 179
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=72.03 E-value=4.4 Score=32.19 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 539 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~R 539 (561)
..|++.|..||..-+. +.+.|..||++.++ +++.+|..++.+
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4688999998886654 25799999999997 799999765544
No 180
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=71.84 E-value=4.1 Score=33.16 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 6799999999999999999999864
No 181
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.84 E-value=6.2 Score=31.29 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.++++...||.+-.. .+ .+.|..||++.+ +||..||++ .|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVyR----~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVYR----VLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHHH----HHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHHH----HHHHHHH
Confidence 478888778775442 22 579999999999 999999965 4555544
No 182
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.80 E-value=4 Score=31.29 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 183
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=71.76 E-value=2.6 Score=32.45 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..|+|+.+|||+.+|.++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 184
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=71.55 E-value=4.2 Score=33.93 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 185
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.09 E-value=5.9 Score=32.09 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 421 NHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 421 gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|.+|+..|||+.+|+|...|+.-|..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999999999887654
No 186
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=71.03 E-value=4.1 Score=33.59 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|+++++.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 187
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.99 E-value=4 Score=34.95 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589998888876543 14689999999999999999765443
No 188
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.72 E-value=4.2 Score=35.20 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
|++.+..||..-+. .+.+.|..+||+.+|+++.+|.+++.+
T Consensus 33 l~~~~~~iL~~l~~--~~~~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 33 VQFSQLVVLGAIDR--LGGDVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 56666666655442 025799999999999999999765544
No 189
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.54 E-value=9.7 Score=34.17 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=37.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+ ..|++.|-.||..-+.. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 334455555 35899998888765431 25799999999999999999765444
No 190
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=70.45 E-value=67 Score=29.60 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Q 008556 327 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 406 (561)
Q Consensus 327 ~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l 406 (561)
..-..++..++.++ |++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.-+++.
T Consensus 10 ~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~------------------- 65 (200)
T 1ais_B 10 AFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRL------------------- 65 (200)
T ss_dssp HHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHH-------------------
Confidence 34444555566555 333 566666677777666666667766655555444433321
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCCC-CCCCchhhhhcccCCCCChhHHHHHHH
Q 008556 407 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQL 485 (561)
Q Consensus 407 ~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~-~d~~~~l~d~l~d~~~~~pee~le~~e 485 (561)
.+.+.+..||+..+|++..++..........+.++.+.. .+....+..+...-+. +++ +. +.
T Consensus 66 -------------~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l--~~~-v~-~~ 128 (200)
T 1ais_B 66 -------------LKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL--SEK-VR-RR 128 (200)
T ss_dssp -------------HTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC--CHH-HH-HH
T ss_pred -------------cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC--CHH-HH-HH
Confidence 224678899999999999888776543322222222210 0111111112111111 111 11 11
Q ss_pred HHHHHHHHHh-----cCCHHHHH--HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008556 486 MRQHVRNLLT-----LLNPKERC--IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 543 (561)
Q Consensus 486 ~~e~L~~aL~-----~L~erER~--VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 543 (561)
....++.++. .-+|.--- +|.+--.+. |.+.|++||+...|+|..+|++..+.-.+.
T Consensus 129 A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~ 192 (200)
T 1ais_B 129 AIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEK 192 (200)
T ss_dssp HHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2223333332 12232211 222211112 368899999999999999998765544443
No 191
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=70.40 E-value=42 Score=27.87 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 412 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 412 a~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
+..-+.......++.++||+.+|+++..+..++..
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 12 AVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33334444556789999999999999999988764
No 192
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.11 E-value=4.1 Score=34.85 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 490 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 490 L~~aL~~L~-erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
+..++..|. |.-..||.+-.. .++|..|||+.+|+|+.+|++.+
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~hL 52 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKHI 52 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHHH
Confidence 344454444 445556655442 57899999999999999998654
No 193
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.01 E-value=5.8 Score=36.86 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+|.+.|+.+-. .++.+.|..|||+.+|||+.+|++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 55666665532 123569999999999999999987665
No 194
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=69.93 E-value=4.8 Score=34.25 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+|+.+|.+++.+
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 334444443 589999988877653 25799999999999999999765544
No 195
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.76 E-value=5.1 Score=35.24 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478888888776543 14799999999999999999765544
No 196
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.71 E-value=5.2 Score=34.43 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.+++.-
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999975
No 197
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=69.43 E-value=4.7 Score=35.07 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 198
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=69.24 E-value=5.6 Score=35.58 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|++.|-.||..-+.. ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3444555553 5899999888765542 236899999999999999999765544
No 199
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=69.04 E-value=19 Score=32.40 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999995 56667765
No 200
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=68.95 E-value=58 Score=34.64 Aligned_cols=35 Identities=31% Similarity=0.620 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhCCCCcHHHHHHHcc--CCHHHHHH
Q 008556 279 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKS 313 (561)
Q Consensus 279 ~le~~~~~l~~~~g~~pt~~ewA~a~g--~~~~eL~~ 313 (561)
++.+.+..+...+|++|+..+.|..+| ++.+.+..
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~ 321 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEE 321 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHH
Confidence 344556677778999999999999998 88766543
No 201
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=68.82 E-value=5.1 Score=36.41 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+...+. .|++.+..||..-+.-+++.+.|..|||+.+|+++.+|.+++.+
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555553 58999999988766422212489999999999999999765544
No 202
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=68.27 E-value=4.8 Score=32.54 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
++....||..-.. + .+.|..|||+.+|+|+.+|.++++
T Consensus 15 ~~~~~~iL~~L~~--~-~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--R-RKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHHHHHHHHH--H-SEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHh--c-CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4556666654331 1 479999999999999999976543
No 203
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=68.23 E-value=4.4 Score=34.34 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|+++++.
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 204
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=68.23 E-value=18 Score=32.61 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHHHHhccc-CC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIE-DG---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~-d~---------e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+...+.++|-.-.+..... .| -++|.++||..+|+|+++|. |++++|++.
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 4567788876543322111 01 25899999999999999995 567777763
No 205
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=68.22 E-value=3.5 Score=33.71 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHH-HHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKE-RVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISre-rVRqie~R 539 (561)
.+.|..+||+.||||.. .||+.+.+
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 47899999999999999 99876543
No 206
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=67.84 E-value=5.2 Score=31.40 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+ |..++|+.+|||+.+|+++++.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 9999999999999999999975
No 207
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=67.73 E-value=8.5 Score=34.08 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=36.7
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 488 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 488 e~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+...+ ..|++.|-.||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 40 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 40 SELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 3699999988876553 14799999999999999999765544
No 208
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.61 E-value=15 Score=32.54 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 487 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 487 ~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+..+...|. .|++.+-.||..-+. .+++.+..|||+.+|+++.+|..++.+
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~--~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINR--LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHH--SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH--cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344555553 589988888765432 236789999999999999999765544
No 209
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=67.56 E-value=22 Score=32.18 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred HhcCCHHHHHHHHHHhccc-C---------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIE-D---------GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~-d---------~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...+.++|-.-.+..... . .-++|.++||..+|+|+++|. |++++|++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4567777776433322111 0 024899999999999999995 56677765
No 210
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=67.52 E-value=12 Score=34.11 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHhccc--C--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIE--D--GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~--d--~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
...+.++|-.-.+...-. + .-+.|.++||..+|+|+++|. |++++|++
T Consensus 144 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 144 MWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 445666665433322111 1 127899999999999999995 56677766
No 211
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.50 E-value=5.7 Score=34.59 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+ ..|++.|-.||..-+. .++.+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~~~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 29 SADARLAELGLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 344444 3699999998877654 2225899999999999999999765443
No 212
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=67.25 E-value=5.9 Score=31.65 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008556 518 SLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 518 Tl~EIAe~LGISrerVRqie~R 539 (561)
+..++|+.||||+.+|++.+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999999764
No 213
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=67.24 E-value=28 Score=31.88 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHHhcccC-C---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIED-G---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~d-~---------e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...+.++|-.-.+...... | -++|.++||..+|+|+++|. |++++|++
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 34567777754433321110 0 24799999999999999995 56777775
No 214
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=67.21 E-value=4.6 Score=35.53 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..++|+.||||+.+||. |++.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVRe----Al~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSK----AYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 34666 899999999999999974 7777765
No 215
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=67.06 E-value=5.4 Score=35.59 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999974
No 216
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.89 E-value=5.2 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
+....||.+-. + .+.+..|||+.+|+|+.+|++.+
T Consensus 21 ~~r~~IL~~L~---~-~~~~~~eLa~~lgis~stvs~~L 55 (118)
T 2jsc_A 21 PTRCRILVALL---D-GVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp HHHHHHHHHHH---T-TCCSTTTHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 44556666533 2 46899999999999999997654
No 217
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=66.71 E-value=5.3 Score=37.38 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+++. +-.+|-. .++|++|+|+.+|||+.+|.++++-
T Consensus 90 ~s~~~--lk~lR~~----~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEM--FGDWMHR----NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHH--HHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHH--HHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 44443 4445544 6799999999999999999999873
No 218
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=66.69 E-value=5.7 Score=33.63 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 219
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=66.66 E-value=4.6 Score=34.79 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=36.8
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+. .|++.|-.||..-+. .++.+.|..|||+.+|+++.+|.+++.+
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 599999988887664 2225789999999999999998765443
No 220
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.41 E-value=3.9 Score=34.27 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.|..+||..+|||..+|+++..+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999987764
No 221
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=66.28 E-value=8.2 Score=34.30 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 543 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 543 (561)
.|.++|... | .|.+..|+|.++|+|..+|++|+++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666664 3 46899999999999999999998776553
No 222
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=66.25 E-value=6.4 Score=33.45 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|.+++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999873
No 223
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=66.24 E-value=54 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 411 EAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 411 ka~~~l~~e~g-r~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
++..-+.+... ..++.++||+.+|++...+..+...
T Consensus 7 ~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555 6889999999999999999988653
No 224
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=66.08 E-value=5.6 Score=36.63 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+++|..+||+.||||+.+|.+++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 679999999999999999988764
No 225
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=66.03 E-value=5.6 Score=32.43 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKER-VRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrer-VRqie~R 539 (561)
.+.|..|||+.+|+++.+ |.+++.+
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHH
Confidence 479999999999999999 8765544
No 226
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=65.63 E-value=5.6 Score=33.42 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008556 490 VRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 538 (561)
Q Consensus 490 L~~aL~~L~erER~-VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 538 (561)
+..+++.|..+-+. ||..-+ + .+.++.||++.+ |||+.+|.+.++
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~---~-~~~~~~eLa~~l~~is~~tls~~L~ 50 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT---H-GKKRTSELKRLMPNITQKMLTQQLR 50 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT---T-CCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH---h-CCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 34556667777663 333322 2 479999999999 999999976443
No 227
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=65.59 E-value=5.9 Score=33.27 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999873
No 228
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=65.58 E-value=6.4 Score=33.83 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..||..-+. +.+.|..+||+.+|+|+.+|.+++.+
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 689999888876553 24689999999999999999765443
No 229
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=65.34 E-value=4.4 Score=38.27 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=25.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+.|+.++- +|+|..+||+.||||+.+|.+++.
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555543 579999999999999999987654
No 230
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.21 E-value=7.8 Score=29.18 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie 537 (561)
.+ |+.++|+.+|||+.+|.+++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999987
No 231
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.17 E-value=5.6 Score=36.88 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
++|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999995 56677765
No 232
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=64.93 E-value=12 Score=36.61 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 493 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 493 aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.-..|++.+..||..-.. + .+.|..|||+.+|+++.+|.++ +++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~--~-~~~s~~eLA~~lglsksTv~r~----L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE--T-KGTGITELAKMLDKSEKTLINK----IAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH--H-TCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 445799999999886432 1 4799999999999999999654 455544
No 233
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=64.45 E-value=5.9 Score=36.81 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36799999999999999995 56777776
No 234
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=64.38 E-value=11 Score=34.41 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.+.|.++||..+|+|+++|. |++++|++.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999995 567777763
No 235
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=64.31 E-value=5.7 Score=31.82 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|.++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 236
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=64.19 E-value=6.2 Score=32.05 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999874
No 237
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=64.13 E-value=5.6 Score=32.51 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHH----HHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEV----GNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EI----Ae~LGISrerVRqie~R 539 (561)
.|++.|-.||..-+. ..+.|..|| |+.+|+++.+|.+++.+
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~ 49 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKF 49 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 367777777765542 357999999 89999999999765544
No 238
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=64.00 E-value=7.3 Score=32.18 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999875
No 239
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=63.91 E-value=1.4 Score=45.16 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
+.+++..||..-|. .++.|.+|||+.||+|+.+||+.+.+.-+
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55666667665443 26899999999999999999987766543
No 240
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=63.85 E-value=12 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHH--hcc---cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLR--FGI---EDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LR--yGL---~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..+++..+.-..++ -++ ++++++|..|||+.+|||+.++.+..+
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45666666554332 221 133479999999999999999999776
No 241
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=63.72 E-value=47 Score=28.57 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 375 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 375 TYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.|..+.+.+.+.+.+.+......++...+..+..+ ...+...+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 45555566666666655443344544333333322 12332458999999999999999888764
No 242
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=63.57 E-value=8.7 Score=32.89 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+++|+.+|||+.+|.++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 243
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=63.39 E-value=5.6 Score=30.75 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.-++..|+++.+|||+.+|.++.++.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 34699999999999999999988764
No 244
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.27 E-value=8.5 Score=33.67 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 496 ~L~erER~VL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.|++.|-.|+..-+.+ +.| ...|..+||+.+|+|..+|.+++.+-
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4666666655544332 222 34799999999999999997655443
No 245
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=63.22 E-value=3.4 Score=32.52 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|+.|||+..|||+.+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998765
No 246
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=63.03 E-value=7.1 Score=32.99 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 540 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 540 (561)
..|++.|..||..-+. +.+.|..|||+.+| +|+.+|..++.+-
T Consensus 6 ~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L 52 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRL 52 (123)
T ss_dssp CCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH
Confidence 4688888888876542 25799999999999 8999997665543
No 247
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=63.02 E-value=30 Score=32.44 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHH-----Hhccc--C----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRL-----RFGIE--D----GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 494 L~~L~erER~VL~L-----RyGL~--d----~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...+.++|-.-.+ ++|-. + .-+.|.++||..+|+|+++|. |++++|++
T Consensus 144 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 144 MNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 45567777764443 23311 0 146899999999999999995 56677765
No 248
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=63.00 E-value=24 Score=33.68 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
++|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999995 56777776
No 249
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=62.79 E-value=7.7 Score=31.33 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3689999999999999999999874
No 250
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=62.68 E-value=5.4 Score=35.00 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008556 503 CIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLES 538 (561)
Q Consensus 503 ~VL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~ 538 (561)
.++...+. .++.++|++|+|+.+| ||+..|.++++
T Consensus 12 ~L~~~~~~-~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 12 RLFDTVYP-PGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHSSC-TTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhhcc-CCCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 34443333 2346899999999998 99999999986
No 251
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.54 E-value=6.6 Score=36.35 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.++|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 35899999999999999995 56667765
No 252
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=62.49 E-value=6.5 Score=36.31 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 46899999999999999995 56677765
No 253
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=62.44 E-value=11 Score=35.80 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=33.8
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 493 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 493 aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.-.-|+..||-.=..++ |+.|...+.+++|+.+|||+..|...+.-|
T Consensus 20 ~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 20 HYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp ---CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 34456777776655555 555677899999999999999998766554
No 254
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.34 E-value=5.8 Score=32.21 Aligned_cols=25 Identities=0% Similarity=0.105 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+..|||+.||||..+||..+.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999976654
No 255
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=62.27 E-value=8.2 Score=33.38 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.+.|.+|||+.+|||+..|+++ +.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~i----l~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQL----VSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46899999999999999999764 555554
No 256
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=62.08 E-value=6.3 Score=34.03 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
.|++.+..||..-+. +.+.|..+||+.+|+++.+|.+++.+-.
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 478888887766543 1478999999999999999977554433
No 257
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.85 E-value=6.9 Score=37.01 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
-++|.++||..+|+|+++|. |++++|++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 36899999999999999995 56777776
No 258
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=61.67 E-value=4.9 Score=34.03 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|..+ |..|||+.||||+.+||. |+++|..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34555 999999999999999975 7777765
No 259
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=61.54 E-value=12 Score=31.59 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHH-HHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008556 490 VRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 538 (561)
Q Consensus 490 L~~aL~~L~erER-~VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 538 (561)
+..++..+..+-+ .||..-.. .+++..||++.+ ||++.+|.+++.
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ----GTKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH----SCBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhccCCHHHHHHHHH
Confidence 4556677776644 34433222 479999999999 999999976543
No 260
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.51 E-value=3.4 Score=31.45 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie 537 (561)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999986
No 261
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=61.44 E-value=8.2 Score=33.81 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.++|++|+|+.+|||+.+|.++++--
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 68999999999999999999999753
No 262
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=61.07 E-value=6.1 Score=36.44 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999995 567777764
No 263
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=60.97 E-value=6.1 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 514 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 514 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
|+.+ |..++|+.||||+.+||. |+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~----al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSK----AYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4566 999999999999999974 7777765
No 264
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=60.93 E-value=6.6 Score=34.76 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+.|..+||+.||||+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999865443
No 265
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=60.71 E-value=11 Score=33.05 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 540 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 540 (561)
+..|++.|..||..-+.. +.+.|..||++.++ ++..+|..++.+-
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 357899999998766531 25799999999998 8999997665543
No 266
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.49 E-value=15 Score=34.42 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 489 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 489 ~L~~aL--~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+...+ ..|++.|..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 36 ~~~~~l~~~gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 36 DWQQWLKPYDLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3689999998876543 14799999999999999999765543
No 267
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=60.35 E-value=6.6 Score=33.15 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|+.++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999864
No 268
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=59.46 E-value=8 Score=34.02 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..++|+.||||+.+||. |++.|..
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr~----Al~~L~~ 54 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATARN----GLTLLVE 54 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHHH----HHHHHHT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 44667 999999999999999985 7777765
No 269
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=59.24 E-value=8.3 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998863
No 270
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=59.20 E-value=23 Score=30.56 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999887754 3556889999999988 57888888887777777753
No 271
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=58.79 E-value=35 Score=28.83 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|..+.+.+.+.+.+........++...+..+..+ ....+...+..+||+.+|++...+..++..
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 4445555555555555444344444333333332 122223668999999999999999888653
No 272
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=58.79 E-value=9.4 Score=29.09 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.1
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 008556 518 SLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 518 Tl~EIAe~LGISrerVRqie 537 (561)
+..+.|+.||||+.++...+
T Consensus 35 n~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 77899999999999987543
No 273
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=58.71 E-value=24 Score=29.45 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHh
Q 008556 515 KPKSLSEVGNIF-GLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 515 e~~Tl~EIAe~L-GISrerVRqie~RALkKLR~~l 548 (561)
-++|+.+||+.| |....+|.. |.+|+.+.+
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~h----a~~ki~~~~ 75 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLH----ACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHH----HHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHH----HHHHHHHHH
Confidence 479999999999 899999976 455555544
No 274
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=58.68 E-value=7.1 Score=36.56 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 5799999999999999995 56777765
No 275
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=58.62 E-value=19 Score=28.75 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhc-ccC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 483 KQLMRQHVRNLLTLLNPKERCIVRLRFG-IED--GKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 483 ~~e~~e~L~~aL~~L~erER~VL~LRyG-L~d--~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
...+...|. ..++++++.|...--+ |++ .=..++.+||+.+|++.+.|.. ++++|+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~----vL~~lQ 73 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEK----VRQKVL 73 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHH----HHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHH----HHHHHh
Confidence 334444555 3589999988776544 442 1345899999999999998854 455544
No 276
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=58.46 E-value=4.2 Score=39.06 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSL--SEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl--~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..+|..-|.+.. ++.|. .+||+.+|+|+.+|++++.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 477777777776665543 24555 99999999999999764443
No 277
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.11 E-value=5.1 Score=36.67 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+-+|+.|+|+.||||+.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 4579999999999999999997653
No 278
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=58.09 E-value=18 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999887754 3456889999999998 67889999988888888864
No 279
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=57.81 E-value=7.3 Score=34.04 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|..+ |..++|+.||||+.+||+ |++.|..
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 61 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAK----AYKELEA 61 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 999999999999999985 7777765
No 280
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=57.81 E-value=6.3 Score=38.85 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQL 536 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqi 536 (561)
.+.|..+||+..|||+.++...
T Consensus 139 ~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 139 HNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHh
Confidence 5789999999999999999764
No 281
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.80 E-value=57 Score=28.95 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 375 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 375 TYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.|..+.+.+.+.+.+........++..-+..+..+ ...+...+..+||+.+|++...+..++..
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 45555666666666665544444554433333332 22233578999999999999999887653
No 282
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.75 E-value=14 Score=29.86 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|.-.|..+.. ......+||+.+|+|...|.........|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 566777777777764321 344678999999999999999999998888764
No 283
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=57.67 E-value=9.9 Score=31.02 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKER----VRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrer----VRqie~R 539 (561)
.++|.+|+|+.+|||+.+ |.++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 468999999999999999 8888865
No 284
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=57.63 E-value=9.7 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..+||+.||||+.+||+ |+..|..
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~----Al~~L~~ 63 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34566 699999999999999975 7777765
No 285
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.60 E-value=3.4 Score=34.43 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|..+ |..+||+.||||+.+|++ |++.|..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 44666 999999999999999986 5555543
No 286
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=57.53 E-value=8.7 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|.++++.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999863
No 287
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=57.52 E-value=8.5 Score=31.75 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999999864
No 288
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.40 E-value=24 Score=28.85 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+.++.+||+.+|+|+.++.++.++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999998887776
No 289
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=56.78 E-value=19 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 566677777777754322 344678999999999999999998888887754
No 290
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=56.64 E-value=6.2 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.-+|++|+|+.|||++.+|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 3479999999999999999988754
No 291
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=56.44 E-value=7.6 Score=34.51 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFG-----LSKERVRQLES 538 (561)
Q Consensus 514 ~e~~Tl~EIAe~LG-----ISrerVRqie~ 538 (561)
+.++|++|+|+.+| ||+..|.++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 46899999999999 99999999986
No 292
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=56.34 E-value=36 Score=29.13 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=42.3
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHH
Q 008556 362 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 440 (561)
Q Consensus 362 iekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~s-r~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v 440 (561)
..+|++.. +-.|..+++.+.+.+.+.+.. ....++...+..+..+ ...+ ..+..+||+.+|++...+
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 34455442 345666667777776665543 2234444433333332 2233 678999999999999999
Q ss_pred HHHHHh
Q 008556 441 ERLIFI 446 (561)
Q Consensus 441 ~~ll~~ 446 (561)
..++..
T Consensus 72 s~~l~~ 77 (148)
T 3nrv_A 72 SRTVKK 77 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 293
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=56.20 E-value=11 Score=32.61 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIF--GLSKERVRQLESR 539 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~L--GISrerVRqie~R 539 (561)
+++.++.||.+--- + .+.|..+||+.+ |+|+.+|++++++
T Consensus 11 md~~d~~IL~~L~~--~-g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--E-GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--H-SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--c-CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66777778765321 1 389999999999 9999999876543
No 294
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=56.00 E-value=11 Score=34.73 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++|+|+.+|||+.+|.++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 295
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=55.90 E-value=8.1 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|+.++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999873
No 296
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=55.78 E-value=12 Score=35.00 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|+|-|+-....++. + .++|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~-~--~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL-A--KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH-H--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688887776555442 2 478999999999999999998754
No 297
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=55.73 E-value=11 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|++++|+.+|||+.+|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 298
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=55.53 E-value=7.3 Score=36.94 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|+|+.+|+|+.+|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999875
No 299
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.30 E-value=14 Score=32.90 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHhcccC-C-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIED-G-KPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d-~-e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
.|++.|--||..-+.+.+ | .+.|.++||+.+|+|...|-+++.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 588888877766555432 2 5579999999999999999776665544
No 300
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=55.11 E-value=13 Score=35.36 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 513 DGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 513 d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+.+.+..+||+.||+|+.+|.+++++
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 346899999999999999999765443
No 301
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.89 E-value=83 Score=25.44 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=23.6
Q ss_pred HhCCC-CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 418 QEGNH-SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 418 ~e~gr-~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
+.... .++.++||+.+|+++..+..++..
T Consensus 13 ~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 13 ESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444 789999999999999999988663
No 302
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=54.76 E-value=52 Score=27.11 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008556 424 PDKEDLARRVGITVEKLERLIFIT 447 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~ 447 (561)
-+..+||..+|++...|..++...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999888754
No 303
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=54.66 E-value=48 Score=27.92 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|..+.+.+.+.+.+.+......++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYL-------SRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-------HHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 4444444455555444333333443333333222 222333678999999999999999887753
No 304
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.46 E-value=5.4 Score=33.23 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
...+..|||+.||||..+||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999999976543
No 305
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=54.40 E-value=19 Score=29.77 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999999998887765
No 306
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=54.39 E-value=14 Score=28.08 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=22.9
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 501 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 501 ER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
|+.+|..-+-- .+.+..+.|+.||||+.++...+
T Consensus 20 E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 20 EKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHH
Confidence 45555443321 23478899999999999887644
No 307
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=54.05 E-value=13 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 540 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 540 (561)
..|++.|..|+..-+- ..+.|..|||+.++ ++..+|..++.|-
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 4688999888876654 24799999999997 5899997766553
No 308
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.78 E-value=19 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999887775
No 309
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.66 E-value=10 Score=38.58 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 500 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 500 rER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
..++||.+-. ..+|+..|-+|||+.||||+.+|++ +++.|++.
T Consensus 4 ~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k----~i~~L~~~ 46 (323)
T 3rkx_A 4 YSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKK----VIDQLKLE 46 (323)
T ss_dssp HHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHH----HHHHHHhc
Confidence 4455665542 1234789999999999999999976 55566664
No 310
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=53.62 E-value=9 Score=34.62 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
++....||.+-.. .++|..|||+.+|+|+.+|++.+
T Consensus 57 ~p~R~~IL~~L~~----~~~t~~eLa~~lgls~stvs~hL 92 (151)
T 3f6v_A 57 EPTRRRLVQLLTS----GEQTVNNLAAHFPASRSAISQHL 92 (151)
T ss_dssp SHHHHHHHHHGGG----CCEEHHHHHTTSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHH
Confidence 3555556655432 57999999999999999998654
No 311
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=53.56 E-value=23 Score=26.18 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+++.+..+|...|.-+.. ......+||..+|++...|+.....-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4677778888888764321 12345789999999999999998877777665
No 312
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=52.99 E-value=18 Score=36.64 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.++...|+.+- .++...|.+|||+.||||+.+|++.+.
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~ 41 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQ 41 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45666676654 234678999999999999999987654
No 313
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.71 E-value=6.2 Score=37.85 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHhcccC-CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d-~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.+..+|..-|.+.. |...+..+||+.||+++.+|.+++.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 466777777777666542 22234599999999999999875443
No 314
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.67 E-value=26 Score=27.84 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhcccC----C-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIED----G-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d----~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|--+. . ......+||..+|++...|+........|.|..
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 57778888888875210 0 012457899999999999999999888888764
No 315
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=52.55 E-value=29 Score=26.89 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 496 LLNPKERCIVRLRFGIEDGKPK----SLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~----Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
.+|+.+..+|.-.|.-+-..++ .-.+||..+|+|...|.........|++..+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 5788888888877751111222 36789999999999999999999999887543
No 316
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=52.52 E-value=15 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
+|++.|+.+--- ..-.|.+|+|+.||||..|||.=+
T Consensus 12 eR~~~i~~~l~~---~~~~~~~~la~~~~vs~~TiRrDl 47 (190)
T 4a0z_A 12 KRREAIRQQIDS---NPFITDHELSDLFQVSIQTIRLDR 47 (190)
T ss_dssp HHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEeHHHHHHHHCCCHHHHHHHH
Confidence 445555555332 245799999999999999998643
No 317
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=52.34 E-value=98 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 420 GNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 420 ~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.+...+..+||+.+|++...+..++..
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344567799999999999999888753
No 318
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=52.09 E-value=9.4 Score=35.87 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSK-ERVRQLESRALYRLKQ 546 (561)
Q Consensus 516 ~~Tl~EIAe~LGISr-erVRqie~RALkKLR~ 546 (561)
++|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7985 56777765
No 319
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=51.93 E-value=16 Score=37.49 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCHHHHHHHHH--HhcccCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 008556 497 LNPKERCIVRL--RFGIEDGKPKSLSEVGNIF--GLSKERVRQLES 538 (561)
Q Consensus 497 L~erER~VL~L--RyGL~d~e~~Tl~EIAe~L--GISrerVRqie~ 538 (561)
|++|++.||.. ...+..+++-+.+++++.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999983 1113344899999999999 999999997543
No 320
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=51.68 E-value=32 Score=27.83 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. .+.|...|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999887755 3556889999999987 26778888877776666653
No 321
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=51.67 E-value=17 Score=35.22 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
..|++-|+-....+.. ..++|.++||+.+|+|+.+|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888765544443 1579999999999999999988764
No 322
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=51.55 E-value=81 Score=27.31 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008556 424 PDKEDLARRVGITVEKLERLIFIT 447 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~ 447 (561)
-+..+||+.+|++...|...+...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 578999999999999999988754
No 323
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=51.51 E-value=7 Score=30.21 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+|.+|+|+.||||+.||.+.....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999887654
No 324
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.04 E-value=3.2 Score=37.43 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|||+.+|||+.+|.++++.
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999998754
No 325
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=51.01 E-value=13 Score=35.39 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=25.3
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |-.++|+.||||+.+||. |++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVRe----AL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLRE----VLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 45778 899999999999999985 7777765
No 326
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=50.71 E-value=28 Score=35.77 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Q 008556 331 RLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 410 (561)
Q Consensus 331 rLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ 410 (561)
+.|..++.++ .+.+-+.|.-.-+++-+...+.-+|-+....+.-.|.-+++ .
T Consensus 131 ~~I~~~~~~L-----~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR----~------------------- 182 (345)
T 4bbr_M 131 AKITMLCDAA-----ELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCR----R------------------- 182 (345)
T ss_dssp HHHHHHHHHT-----TCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHH----H-------------------
T ss_pred HHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHH----h-------------------
Confidence 3445555544 23467888888888888877878887776666555544432 1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhc
Q 008556 411 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 447 (561)
Q Consensus 411 ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~~ 447 (561)
.+.+-+..||+..++++..++.......
T Consensus 183 ---------~~~prtl~eI~~~~~v~~keigr~~k~l 210 (345)
T 4bbr_M 183 ---------AEVARTFKEIQSLIHVKTKEFGKTLNIM 210 (345)
T ss_dssp ---------TCCBCCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ---------cCCCccHHHHHHHhCCCHHHHHHHHHHH
Confidence 2235577888888888888877665443
No 327
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=50.65 E-value=43 Score=25.65 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3567777888888864422 2345679999999999999999988888887654
No 328
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=50.29 E-value=24 Score=29.33 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. .+.|+..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999987755 3556889999999988 46788888888777777754
No 329
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.00 E-value=1.1e+02 Score=25.60 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
+..+.+.+.+.+.+........++..-+..+..+ ... +...+..+||+.+|++...+..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~-~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 13 TLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHL-------ARH-RDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHH-------HHC-SSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHc-CCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 3344444455555544333333444333333322 112 23678999999999999999888763
No 330
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=49.97 E-value=9.3 Score=32.37 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
++|..|+|+.+|||..++|..+..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999988754
No 331
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=49.85 E-value=15 Score=35.43 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..|+|+.||||+.+||+ |+..|.+
T Consensus 29 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 59 (236)
T 3edp_A 29 TGMLMPNETALQEIYSSSRTTIRR----AVDLLVE 59 (236)
T ss_dssp CCC--CCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34667 899999999999999985 7777765
No 332
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=49.70 E-value=47 Score=25.51 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 566777778777764432 34467899999999999999999888888877543
No 333
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.54 E-value=28 Score=27.55 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 556666777776653321 12346789999999999999999988888887654
No 334
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=49.46 E-value=42 Score=27.01 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHhcccCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008556 497 LNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 551 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 551 (561)
++..+..+|.-.|.-+-..+ ..-.+||..+|+|...|......+..|.+..+...
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 56667777776554110012 25578999999999999999999999998876543
No 335
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.98 E-value=85 Score=27.13 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...|..++..
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999998887753
No 336
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=48.91 E-value=3.6 Score=38.30 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
+.|+.++- .|+|..+||+.||||+.+|.+++...
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 44555543 57999999999999999998776553
No 337
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=48.70 E-value=17 Score=35.18 Aligned_cols=30 Identities=40% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..|+|+.||||+.+||+ |++.|..
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 60 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQ----ALSNLVN 60 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 899999999999999985 7777765
No 338
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=48.66 E-value=10 Score=35.22 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
-++|.++||..+|+|+++|. |++++|++
T Consensus 177 l~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36789999999999999996 56666665
No 339
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=48.56 E-value=25 Score=29.45 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 545 (561)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 48999999887754 3556889999999988 5677888888777777775
No 340
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=48.54 E-value=41 Score=29.44 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 489 HVRNLLTLLNPKERCIVRLRFGIEDGK---------PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 489 ~L~~aL~~L~erER~VL~LRyGL~d~e---------~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|-.+--.|+..|+.||.+....-+.. ..+..|+++.+|++..+.-+.++.|.++|.+
T Consensus 11 ~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 11 KLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 345667789999999998866543221 2578999999999999999999999999875
No 341
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=48.36 E-value=62 Score=27.47 Aligned_cols=62 Identities=5% Similarity=0.139 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|..+.+.+.+.+.+........++...+..+..+.. . ...+..+||+.+|++...+..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~--------~-~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA--------N-EPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHH--------H-SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH--------c-CCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 444555555666665554444455444444433311 1 2578999999999999999887653
No 342
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.19 E-value=28 Score=26.96 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 566677777777753321 1224678999999999999999988888887654
No 343
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.91 E-value=8.4 Score=34.68 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+.|.++||..+|+|+++|.++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999876554
No 344
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.86 E-value=17 Score=35.17 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.++|+.|||+.+|+++.+|.++++
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999999976654
No 345
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=47.81 E-value=17 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..|+|+.+|||+.+||+ |+..|..
T Consensus 25 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 55 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEVSKSTITK----SLELLEQ 55 (239)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 44667 899999999999999985 7777765
No 346
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=47.77 E-value=15 Score=35.37 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.++..++|+.||||+.+||. ||+.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VRe----AL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVRE----ALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 45788999999999999999984 7777754
No 347
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=47.71 E-value=15 Score=35.44 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 513 DGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 513 d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+.++|+.|||+.+|+++.+|.+++.
T Consensus 18 ~~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 18 HPHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp CTTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33579999999999999999976544
No 348
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=47.48 E-value=30 Score=33.65 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|..+||+.+|||+..|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 3689999999999999999999973
No 349
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=47.39 E-value=12 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~R 539 (561)
++++.++|+..|||+.++..|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 589999999999999999998764
No 350
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=47.28 E-value=30 Score=25.57 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566777788777763321 12246789999999999999998877777654
No 351
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=47.25 E-value=20 Score=28.15 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008556 518 SLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 518 Tl~EIAe~LGISrerVRqie~R 539 (561)
|+.++|+.+|||+.+|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 352
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.20 E-value=26 Score=27.04 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 566666777777653221 1224678999999999999999988888877643
No 353
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.19 E-value=25 Score=34.38 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.|-.||..-+. .+|.+.|..|||+.+++++.+|..++.+
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 699999888877653 2223699999999999999999765544
No 354
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.96 E-value=21 Score=27.92 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008556 496 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 550 (561)
Q Consensus 496 ~L~erER~VL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 550 (561)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|.........|.+..+..
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3667777777777631 110 122456899999999999999999999998876543
No 355
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=46.89 E-value=22 Score=28.90 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHh
Q 008556 423 SPDKEDLARRVGITVE-KLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e-~v~~ll~~ 446 (561)
+.+..+||+.|||+.. .|+..|..
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 5689999999999999 99888764
No 356
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=46.81 E-value=24 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+.++|+.|||+.+|+++.+|.++++
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999976554
No 357
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=46.73 E-value=10 Score=33.98 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
.+++.+++++..... +.+.+..+||+.+|+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 455667777665443 157899999999999999997654
No 358
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=46.72 E-value=20 Score=31.90 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...|.+|||+.+|||+..|+++ +.+|++
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~ki----l~~L~~ 56 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKI----MSYLKQ 56 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46799999999999999999765 455554
No 359
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=46.59 E-value=31 Score=26.89 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHh---cccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008556 496 LLNPKERCIVRLRF---GIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 551 (561)
Q Consensus 496 ~L~erER~VL~LRy---GL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 551 (561)
.+++.+..+|.-.| .-+.. ....-.+||..+|+|...|.........|.|......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46777888888887 32111 1224568999999999999999999999988765443
No 360
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=46.53 E-value=13 Score=30.53 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 499 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 499 erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.-|+.+|..-+-.. +.+..+.|+.||||+.++...++
T Consensus 50 ~~E~~~i~~aL~~~---~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHT---QGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHT---TTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCHHHHHHHHCcCHHHHHHHHH
Confidence 34666665544322 23567999999999999875543
No 361
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=46.38 E-value=32 Score=25.66 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566777788777763321 12246789999999999999998887777664
No 362
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=46.36 E-value=18 Score=30.27 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 545 (561)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 48999999887754 3556889999999998 5677888887777777775
No 363
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=46.36 E-value=13 Score=34.94 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 513 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.|+.++-.++|+.||||+..||. |+++|...
T Consensus 32 pG~~L~e~~La~~lgVSRtpVRE----AL~~L~~e 62 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRD----ALLQLATE 62 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHH----HHHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHHH----HHHHHHHC
Confidence 45788999999999999999985 77887653
No 364
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.11 E-value=13 Score=31.12 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008556 492 NLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 538 (561)
Q Consensus 492 ~aL~~L~erER~-VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 538 (561)
.++..+..+-+. ||..-+ + .++++.||++.+ |+|+.+|.++++
T Consensus 17 ~~l~~l~~~~~~~IL~~L~---~-~~~~~~eL~~~l~gis~~~ls~~L~ 61 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN---R-RIIRYGELKRAIPGISEKMLIDELK 61 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT---T-SCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH---h-CCcCHHHHHHHcccCCHHHHHHHHH
Confidence 444555555443 333222 2 479999999999 599999976543
No 365
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=45.98 E-value=19 Score=35.56 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ |..|+|+.||||+.+||+ |+..|..
T Consensus 49 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 79 (272)
T 3eet_A 49 PHTRLPSQARIREEYGVSDTVALE----ARKVLMA 79 (272)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCCCcCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 34667 999999999999999985 7777765
No 366
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=45.93 E-value=32 Score=31.35 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhcc---cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGI---EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL---~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+.+..|+.-..| .++.+.|.+|||+.+|||+..|+++ +.+|++
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~ki----l~~L~~ 70 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQL----IGPLRN 70 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3555555544433222 2345799999999999999999865 455554
No 367
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=45.85 E-value=1.8e+02 Score=26.54 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhCCCCcHHHHHHHccCCHHHHHHH
Q 008556 279 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 314 (561)
Q Consensus 279 ~le~~~~~l~~~~g~~pt~~ewA~a~g~~~~eL~~~ 314 (561)
++.+....+....|+.|+..+.+...|++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKT 135 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHH
Confidence 345566677788899999999999999987766443
No 368
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=45.69 E-value=19 Score=34.98 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=25.7
Q ss_pred ccCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 511 IEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 511 L~d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+..|+.+ |..|+|+.||||+.+||+ |+..|..
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 62 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQ----ALRELLI 62 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3344677 999999999999999985 7777754
No 369
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=45.59 E-value=51 Score=29.14 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHHHhcccCCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 495 TLLNPKERCIVRLRFGIEDGKP---KSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 495 ~~L~erER~VL~LRyGL~d~e~---~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
..++++++.|...--+--|..| .+++||++.+|++.+.|. +++++|+.
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 3689999988776554323344 589999999999999885 46666664
No 370
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=45.57 E-value=25 Score=31.18 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.++++.||++.+|||+.+|.++++
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 479999999999999999976543
No 371
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=45.23 E-value=30 Score=25.93 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567777788877764321 12246789999999999999998777776653
No 372
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=44.87 E-value=54 Score=27.73 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
-++|+.+||+.||-...+|-. |.+|+.+.+.
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~h----a~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMY----AQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHH----HHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHH----HHHHHHHHHH
Confidence 579999999999999999975 4555554443
No 373
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=44.65 E-value=29 Score=27.34 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.++..|||+.+|++...|...+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 689999999999999999887754
No 374
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=44.52 E-value=38 Score=26.69 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 498 NPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+..+..+|.-.|..+.. .+....+||..+|+|+..|+.....-..|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 44566666666654321 3446789999999999999999999988888643
No 375
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=44.51 E-value=37 Score=32.19 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.++|..++|+.+|||..+|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 579999999999999999999975
No 376
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=44.48 E-value=31 Score=27.76 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008556 496 LLNPKERCIVRLRFGIEDGKPK----SLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 550 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~----Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 550 (561)
.+++.+..+|.-.|.-....++ .-.+||..+|++...|.........|.|.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4677888888888731111222 456899999999999999999999998876543
No 377
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=43.80 E-value=12 Score=34.44 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp --------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36799999999999999996 45666654
No 378
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=43.64 E-value=58 Score=26.75 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=44.3
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHH
Q 008556 339 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 418 (561)
Q Consensus 339 rY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~ 418 (561)
......++++||.+...+.--.--..|.-.-|..|..|...+ |+.+|...|..
T Consensus 16 ~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~---------------------------Rl~~A~~lL~~ 68 (108)
T 3oou_A 16 EHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY---------------------------RVNYAKEELLQ 68 (108)
T ss_dssp HHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHHHHHc
Confidence 333456889999888777666555666655566666665433 23333333322
Q ss_pred hCCCCCCHHHHHHHhCC-CHHHHHH
Q 008556 419 EGNHSPDKEDLARRVGI-TVEKLER 442 (561)
Q Consensus 419 e~gr~Pt~eEIA~~lgi-s~e~v~~ 442 (561)
...++.+||..+|. +......
T Consensus 69 ---~~~si~~IA~~~Gf~~~s~F~r 90 (108)
T 3oou_A 69 ---TKDNLTIIAGKSGYTDMAYFYR 90 (108)
T ss_dssp ---CCCCHHHHHHHTTCCCHHHHHH
T ss_pred ---CCCCHHHHHHHcCCCChHHHHH
Confidence 14578899999887 3443333
No 379
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=43.60 E-value=22 Score=34.58 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+.++|+.|||+.+|+++.+|.++++
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999976544
No 380
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=43.39 E-value=85 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|.........|.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4677888888888764 211 11235688999999999999999888777664
No 381
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.34 E-value=71 Score=27.87 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 374 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 374 STYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
-.|...++.+.+.+.+........++...+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 27 l~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~--------~~~-~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 27 LPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLS--------AYG-ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH--------HHS-EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------hCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444555555555443333334443333333321 123 578999999999999998887653
No 382
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.28 E-value=42 Score=26.67 Aligned_cols=52 Identities=8% Similarity=0.037 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 567777888888863321 1224678999999999999999887777777643
No 383
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=43.19 E-value=37 Score=26.77 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 550 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 550 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 566666777777753321 122457899999999999999998888888765543
No 384
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=43.16 E-value=34 Score=27.60 Aligned_cols=24 Identities=0% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 678999999999999999987653
No 385
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.12 E-value=14 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.+|..|+|+.+|||..++|..+.+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 479999999999999999999876
No 386
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=43.09 E-value=45 Score=27.54 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
.+++.+..+|...|.-+.. ......+||..+|++...|......-..|.|....
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888888888863321 12246789999999999999999888888877543
No 387
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=43.08 E-value=21 Score=29.17 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=17.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie 537 (561)
.+..+.|+.||||+.++...+
T Consensus 55 GN~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 468899999999999987543
No 388
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=43.07 E-value=1.8e+02 Score=27.55 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=23.2
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 418 QEGNHSPDKEDLARRVGITVEKLERLIF 445 (561)
Q Consensus 418 ~e~gr~Pt~eEIA~~lgis~e~v~~ll~ 445 (561)
+......+.+++|+.+|+++..+..+.+
T Consensus 180 ~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 180 SDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445578999999999999999988864
No 389
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=42.95 E-value=1.6e+02 Score=25.80 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=56.1
Q ss_pred hhhC-CCCcHHHHHHHccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHh-hhhcC
Q 008556 289 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS-VEKFK 366 (561)
Q Consensus 289 ~~~g-~~pt~~ewA~a~g~~~~eL~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirA-iekFD 366 (561)
...| ...|..+.|+.+|++...+-....+-+.-+..++..+..-+..........+.+..+.+...+..++.. +...+
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 3346 458999999999999999998888777888888888777776666666555677777777777666666 44444
Q ss_pred C
Q 008556 367 P 367 (561)
Q Consensus 367 p 367 (561)
+
T Consensus 108 ~ 108 (212)
T 3knw_A 108 W 108 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 390
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=42.92 E-value=41 Score=25.36 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|..
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566777778777764321 123457899999999999999988877777653
No 391
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=42.91 E-value=53 Score=25.19 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 567778888888864321 12245789999999999999999888777776543
No 392
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=42.64 E-value=37 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|..
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 3567788888888863321 122457899999999999999998888887754
No 393
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=42.48 E-value=62 Score=26.79 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHH
Q 008556 336 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 380 (561)
Q Consensus 336 IArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~w 380 (561)
+........++++||.+...+.--.--..|.-.-|..|..|+..+
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 59 (113)
T 3oio_A 15 LMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLEL 59 (113)
T ss_dssp HHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 334444556889999888777666666666666677776665543
No 394
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=42.30 E-value=35 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 411 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 445 (561)
Q Consensus 411 ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~ 445 (561)
....++..+.|..|+..|||+.+|++...+...+.
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 33344455677899999999999999888877664
No 395
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=42.22 E-value=5.3 Score=37.24 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
.|+|..+||+.||||+.||.+++.+.-.
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 5799999999999999999877655433
No 396
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=42.13 E-value=11 Score=31.83 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
+|..|+|+.+|||..++|..+..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999887643
No 397
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=42.07 E-value=37 Score=25.30 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 3567777888877754321 12246789999999999999998887777664
No 398
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.73 E-value=24 Score=34.51 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 513 DGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 513 d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+.++|+.|||+.+|+++.+|.+++.
T Consensus 33 ~~~~~~~~eia~~~gl~~stv~r~l~ 58 (265)
T 2ia2_A 33 RNQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp SCSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999999999976654
No 399
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=41.40 E-value=43 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 48999999887654 3556788999999987 35667777777666666643
No 400
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.31 E-value=30 Score=30.70 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+.+.|.+|||+.+|||+..|+++ +.+|++
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~ki----l~~L~~ 54 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQL----VGPLRN 54 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 35789999999999999999765 455554
No 401
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=41.24 E-value=82 Score=26.27 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|..+.+.+.+.+.+........++...+..+.-+ ... ...+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~-~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI--------HRE-PGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH--------HHS-TTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HHc-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555555554443334444333333322 122 2578999999999999999887753
No 402
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=41.11 E-value=22 Score=33.81 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 513 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 513 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.+ +-.++|+.||||+..||. ||++|..
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVRE----AL~~L~~ 54 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLRE----ALRVLEA 54 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 45778 678999999999999985 7777765
No 403
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=41.06 E-value=26 Score=29.60 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 545 (561)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999887754 3556889999999988 4677888887777777774
No 404
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=41.04 E-value=25 Score=30.74 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIF-GLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~L-GISrerVRqie~ 538 (561)
.++++.||++.+ |||+.+|.+++.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~ 71 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQ 71 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHH
Confidence 479999999999 799999976543
No 405
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=40.88 E-value=30 Score=33.72 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.|++.|+.+|..-.-..+|.+.+..++|+.||+++.++...+.+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776533222346789999999999999999875544
No 406
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=40.76 E-value=42 Score=32.55 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
.+.|..+||+.+|+++.+|+..+.
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHH
Confidence 589999999999999999987543
No 407
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=40.42 E-value=18 Score=34.72 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 503 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 503 ~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.|+.-.| ..|+.++..++|+.||||+..||. ||++|..
T Consensus 40 ~I~~g~l--~pG~~L~e~~La~~lgVSRtpVRE----AL~~L~~ 77 (239)
T 2hs5_A 40 AIIDGTF--RPGARLSEPDICAALDVSRNTVRE----AFQILIE 77 (239)
T ss_dssp HHHHTSS--CTTCEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHcCCC--CCcCEeCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 3444433 345788999999999999999985 7777764
No 408
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=40.29 E-value=28 Score=25.97 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 543 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkK 543 (561)
.+++.+..+|...|.-+.. ......+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4677888888888864321 12246789999999999999988766554
No 409
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=40.13 E-value=60 Score=27.29 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHH-HHhc--ccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 495 TLLNPKERCIVR-LRFG--IEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 495 ~~L~erER~VL~-LRyG--L~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..|++-+-.|+. |... .-.|..+++.+||+.+++++.+++..+.+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 346666666666 3322 11235689999999999999999765443
No 410
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=39.97 E-value=47 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 422 HSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 422 r~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
...+..+||+.+|++...+..++..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHH
Confidence 3678999999999998888777653
No 411
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=39.91 E-value=71 Score=27.89 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 373 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 373 FSTYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
...|..+.+.+.+.+.+........++...+..+..+ ...+ ..+..+||+.+|++...+..++..
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l--------~~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQFTALSVL--------AAKP-NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH--------HHCT-TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3446666666666666655443344544444333332 2233 678999999999999888877653
No 412
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=39.85 E-value=28 Score=29.42 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
++.|+.+||+.+|+|+.++.++.++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999988776543
No 413
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=39.46 E-value=29 Score=32.79 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008556 493 LLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 493 aL~~L~-erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 537 (561)
++..|. +....||.+-.. .+++..||++.+|+|..+|.+++
T Consensus 8 ilkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is~stvs~hL 49 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLTK----RPYFVSELSRELGVGQKAVLEHL 49 (202)
T ss_dssp HHHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHH
Confidence 344443 445556655432 57999999999999999997654
No 414
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=39.30 E-value=35 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 008556 424 PDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.+..+||+.+|++...+..++..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999888764
No 415
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=39.18 E-value=41 Score=24.55 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRL 544 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKL 544 (561)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 567778888888763321 123457899999999999998877665543
No 416
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=39.14 E-value=20 Score=33.78 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=28.6
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 504 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 504 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
|+.-.| ..|+.++..++|+.||||+..||. |+++|..
T Consensus 29 I~~g~l--~pG~~L~E~~La~~lgVSRtpVRE----Al~~L~~ 65 (222)
T 3ihu_A 29 LELGTF--VPGQRLVETDLVAHFGVGRNSVRE----ALQRLAA 65 (222)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHhCCC--CCCCccCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 444443 345788999999999999999985 7777765
No 417
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=39.12 E-value=1.2e+02 Score=25.65 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999888763
No 418
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.09 E-value=1.3e+02 Score=26.32 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=21.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcC
Q 008556 424 PDKEDLARRVGITVEKLERLIFITR 448 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~~ 448 (561)
-+..+||+.+|++...|..++....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4789999999999999999987543
No 419
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=39.05 E-value=11 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 504 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 504 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
||....+ ..+|+.|.++.+|||.+.|.+.+....
T Consensus 42 VV~~v~~----g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 42 VVRGVIY----GLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHH----TTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555444 589999999999999999999887653
No 420
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=38.42 E-value=35 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.-|..++|+.+|++...|..+...
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 357888899999988888887664
No 421
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=38.36 E-value=21 Score=27.58 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 566667777777753321 122467899999999999999988877776653
No 422
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=38.27 E-value=49 Score=26.28 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 566677777777753221 1223578999999999999999988888887643
No 423
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=38.26 E-value=27 Score=31.66 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008556 518 SLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 518 Tl~EIAe~LGISrerVRqie~R 539 (561)
|.+|+|+.+|||+.+|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 424
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=37.84 E-value=94 Score=25.93 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 374 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 374 STYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
-.|..+.+.+.+.+.+.+..+...++..-+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~--------~~~-~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 8 LGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIR--------CAA-CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHH--------HHS-SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH--------hcC-CCCHHHHHHHHCCChHHHHHHHHH
Confidence 3466666777777766665444445544443333331 122 568999999999999999888763
No 425
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=37.69 E-value=60 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHH
Q 008556 336 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 380 (561)
Q Consensus 336 IArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~w 380 (561)
+........+.++||.+...+.--.--..|... |..|..|...+
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~ 58 (120)
T 3mkl_A 15 VINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTEC 58 (120)
T ss_dssp HHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 333333446888999888777665555566655 77777665543
No 426
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=37.64 E-value=50 Score=25.35 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 566777788777764321 1224678999999999999999988888877644
No 427
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.43 E-value=74 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhCCCCcHHHHHHHccCCHHHHHHH
Q 008556 281 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 314 (561)
Q Consensus 281 e~~~~~l~~~~g~~pt~~ewA~a~g~~~~eL~~~ 314 (561)
.++..-++..+..++++.++|+.+|++...|.+.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3444556666777889999999999998777654
No 428
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=37.26 E-value=16 Score=32.44 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHh-cccCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRF-GIEDGKPKSLSEVGN----IF--GLSKERVRQLESRA 540 (561)
Q Consensus 496 ~L~erER~VL~LRy-GL~d~e~~Tl~EIAe----~L--GISrerVRqie~RA 540 (561)
.|+-.|+.-|+.++ - ...++|..+||+ .| ||++.+|+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~--~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQ--LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHS--SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46767777666666 2 125789999999 99 99999999998764
No 429
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=37.25 E-value=13 Score=31.25 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.+.|+.|+|+.+|||.+.|.+....-
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 47899999999999999999887653
No 430
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=37.10 E-value=1.4e+02 Score=25.09 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 376 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 376 YA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
|..+.+.+.+.+.+........++...+..+..+ ...+ ..+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l--------~~~~-~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRV--------CENP-GIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHH--------HHST-TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCc-CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 4444555555555555444444554444333332 1222 568999999999999999887763
No 431
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=36.82 E-value=22 Score=34.67 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 504 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 504 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+=.|.+.-..+.++|+.|||+.+|+++.+|..++.
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344432234689999999999999999976544
No 432
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.80 E-value=39 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 566677777777754321 12246789999999999999999888888877543
No 433
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=36.68 E-value=64 Score=25.96 Aligned_cols=70 Identities=11% Similarity=-0.000 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhCCCHHH----HHHHHHhcCCCccCCCCC--CCCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhc
Q 008556 423 SPDKEDLARRVGITVEK----LERLIFITRMPLSMQQPV--WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 496 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~----v~~ll~~~~~~~SLD~~v--~~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~ 496 (561)
.-|..++|+.+|++... |..+...... .+++.-. ..--+.++.+++.. ++ ....+...+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~-p~~~~l~~la~~l~v~~~~l~~~------~~------~~~~~~~~~~~ 80 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHA-PDFEMANRLAKVLKIPVSYLYTP------ED------DLAQIILTWNE 80 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHTSCGGGGGCC------CH------HHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCC------Ch------hHHHHHHHHHh
Confidence 46889999999999998 8777654332 2222100 00001111222211 11 12345567899
Q ss_pred CCHHHHHHH
Q 008556 497 LNPKERCIV 505 (561)
Q Consensus 497 L~erER~VL 505 (561)
|++.++..|
T Consensus 81 l~~~~~~~~ 89 (98)
T 3lfp_A 81 LNEQERKRI 89 (98)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999988
No 434
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.49 E-value=69 Score=26.71 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHH
Confidence 568999999999998888777653
No 435
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=36.42 E-value=28 Score=27.08 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=19.0
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 008556 518 SLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 518 Tl~EIAe~LGISrerVRqie 537 (561)
++.+.|+.||||+.+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999886
No 436
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=36.29 E-value=28 Score=29.85 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999998887765
No 437
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.11 E-value=34 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 456666677666653321 234568999999999999999998887776653
No 438
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.11 E-value=89 Score=24.09 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|.- +.. ......+||..+|++...|......-..|.|...
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 577788888888862 221 1224678999999999999999988888877754
No 439
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.79 E-value=47 Score=27.97 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 494 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 494 L~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
+..|++.|+.|+.+-.-- +++|.+.++|...+|++...|.. +|++|-
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vtk----iLK~LE 78 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINK----ILKNLE 78 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHHH----HHHHHH
Confidence 357888888888776542 34889999999999999888754 555553
No 440
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=35.63 E-value=37 Score=28.52 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=17.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLE 537 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie 537 (561)
.+..+.|+.||||+.+++..+
T Consensus 72 gn~~~AA~~LGIsR~TL~rkL 92 (98)
T 1eto_A 72 GNQTRAALMMGINRGTLRKKL 92 (98)
T ss_dssp TCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 478899999999999987543
No 441
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=35.60 E-value=34 Score=32.66 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+++...+.|..-|.|. ++.+..+||+.||+|..+|+. ++++|++
T Consensus 13 ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~~----~lkkL~e 56 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVRT----LLRKLSH 56 (200)
T ss_dssp -CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 4444555555555552 578999999999999999975 6667765
No 442
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.57 E-value=38 Score=28.02 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 678999999999999999988764
No 443
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.37 E-value=28 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 455556666666653221 122467899999999999999988877776653
No 444
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.14 E-value=22 Score=28.11 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 498 NPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 498 ~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
++.+..+|...|-.+.. ......+||..+|++...|......-..|.|..
T Consensus 25 t~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 25 TPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 44444455555542211 122347899999999999999998888887753
No 445
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=35.00 E-value=18 Score=31.94 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 517 KSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 517 ~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
||..|+|+.+|||..++|..+...+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5889999999999999999887643
No 446
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=34.95 E-value=89 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 374 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 374 STYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
-.|....+.+.+.+.+........++...+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 24 l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~--------~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 24 IGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLY--------RED-GINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHH--------HSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566666666666555444445544444443331 122 568999999999999999887653
No 447
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=34.87 E-value=12 Score=31.61 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008556 492 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 540 (561)
Q Consensus 492 ~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 540 (561)
+....|++.|..|+..-.. . .+.|..||++.++ ++..+|..++.+-
T Consensus 28 ~~~~~LT~~e~~VL~~L~~--~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rL 77 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS--L-GEARVDEIYAQIPQELEWSLATVKTLLGRL 77 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH--H-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh--C-CCCCHHHHHHHHhcccCCCHhhHHHHHHHH
Confidence 3345699999888877653 2 4799999999997 5788987655543
No 448
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.70 E-value=1.2e+02 Score=25.79 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578999999999999999888763
No 449
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=34.48 E-value=30 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCC-CHHHHHHHHHHH
Q 008556 504 IVRLRFGIEDGKPKSLSEVGNIFGL-SKERVRQLESRA 540 (561)
Q Consensus 504 VL~LRyGL~d~e~~Tl~EIAe~LGI-SrerVRqie~RA 540 (561)
-|..+.. .|+|+.+|+...|| |+.||...+.+-
T Consensus 20 ~I~~~i~----~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 20 DICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHH----CCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3444445 78999999999999 999999988763
No 450
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=34.45 E-value=56 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 445555666666643211 1224578999999999999999988877777654
No 451
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.20 E-value=22 Score=27.50 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 566667777777753321 12245789999999999999998877776654
No 452
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=34.15 E-value=42 Score=26.82 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4677777788777763321 122467899999999999999998888777753
No 453
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=34.14 E-value=20 Score=35.39 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLES 538 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~ 538 (561)
+.++|+.|||+.+|+++.+|..++.
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~ 67 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLA 67 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3679999999999999999976543
No 454
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.12 E-value=1.4e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 422 HSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 422 r~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
...+..+||+.+|++...+..++..
T Consensus 49 ~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 49 GPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCchhHHHHHHH
Confidence 3678999999999999999887753
No 455
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.11 E-value=96 Score=24.01 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|.. +.. ......+||..+|++...|......-..|.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567777788877752 321 1224678999999999999999988887777654
No 456
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=33.69 E-value=1.6e+02 Score=24.44 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 375 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 375 TYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.|..+.+.+.+.+.+...... .++..-+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l~--------~~~-~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 14 GFILRQANQRYAALFANGIGN-GLTPTQWAALVRLG--------ETG-PCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHH--------HHS-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--------HcC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555666666554443 45544433333321 123 678999999999999999888764
No 457
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.16 E-value=53 Score=26.80 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.++.+..+|...|.-+.. ......+||..+|++...|......-..|.|..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 566677777777753321 223567899999999999999998887777653
No 458
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.01 E-value=37 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 550 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 550 (561)
+++.+..+|...|-.+.. ......+||..+|++...|+.....-..|.|+.-..
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 455666677666653221 223567899999999999999998888777764433
No 459
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=32.99 E-value=73 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRA 540 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RA 540 (561)
.+.+..|+++.+|++...++.++..+
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l 44 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQA 44 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 56799999999999999998765443
No 460
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=32.86 E-value=29 Score=34.87 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
.++|.+|+|+.+|||+..|.++|+-
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 461
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=32.84 E-value=40 Score=28.38 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=19.2
Q ss_pred CCC--HHHHHHHh-CCCHHHHHHHHH
Q 008556 516 PKS--LSEVGNIF-GLSKERVRQLES 538 (561)
Q Consensus 516 ~~T--l~EIAe~L-GISrerVRqie~ 538 (561)
+++ +.||++.+ |||..++.+.++
T Consensus 40 ~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 40 STRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp SSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 556 99999999 999999876543
No 462
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=32.84 E-value=40 Score=33.38 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 008556 501 ERCIVRLRFGIEDGKPKSLSEVGNIFG-------LSKERVRQLESRA 540 (561)
Q Consensus 501 ER~VL~LRyGL~d~e~~Tl~EIAe~LG-------ISrerVRqie~RA 540 (561)
.|.+|.+.|- .|++..+|++.|+ +|+.+|..+.++-
T Consensus 11 ~R~~i~~~~~----~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFH----LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 3556666666 7899999999987 9999999988764
No 463
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.81 E-value=96 Score=26.81 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 375 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 375 TYA~~wIRqaI~~~Ir~~sr~IRlP~~~~~~l~ki~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.|..+.+.+.+.+.+........++...+..+..+ ...+ ..+..+||+.+|++...+..++..
T Consensus 27 ~~~l~~~~~~~~~~~~~~l~~~~lt~~~~~iL~~l--------~~~~-~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 27 PYLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL--------SAKD-GLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH--------HHSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCChhHHHHHHHH
Confidence 35555555555555544433333443333333322 2233 568999999999999999888763
No 464
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.74 E-value=1.9e+02 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHH
Confidence 578999999999999999887753
No 465
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.62 E-value=1.2e+02 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 422 HSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 422 r~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..-|.+|||+.+|++...|...+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4679999999999999999988654
No 466
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=32.61 E-value=38 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
|++++-.|||+.+||.+.-|. +|+++|++.
T Consensus 32 G~PlkageIae~~GvdKKeVd----Kaik~LKkE 61 (80)
T 2lnb_A 32 GSPVKLAQLVKECQAPKRELN----QVLYRMKKE 61 (80)
T ss_dssp TSCEEHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHH----HHHHHHHHc
Confidence 489999999999999988775 577777763
No 467
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=32.59 E-value=1e+02 Score=25.64 Aligned_cols=54 Identities=17% Similarity=-0.010 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008556 496 LLNPKERCIVRLRFGIEDG----KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 549 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~----e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 549 (561)
.|++....||.-.|.-.-. ....-.+||..+|+|...|......+.+|.+..+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 3677777777766641100 12234689999999999999999999999887653
No 468
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=32.48 E-value=78 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
++.|+.+||..+|+|.....++.++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999998887765544
No 469
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=32.13 E-value=64 Score=26.04 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 4677888888888863321 12246789999999999999998887777764
No 470
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=32.09 E-value=22 Score=31.91 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
..+|..|+|+.+|||..++|..+...+
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~GL 29 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKINL 29 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHCCC
Confidence 357999999999999999999887643
No 471
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.68 E-value=61 Score=33.25 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008556 502 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 542 (561)
Q Consensus 502 R~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 542 (561)
+.||.+-+- ..+.|..|||+.+|+|+.+|.++..+-+.
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345554432 25799999999999999999987765444
No 472
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=31.62 E-value=89 Score=26.30 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=41.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCccCCCCC--CCCCCchhhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHH
Q 008556 423 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV--WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 500 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v--~~d~~~~l~d~l~d~~~~~pee~le~~e~~e~L~~aL~~L~er 500 (561)
.-|..++|+.+|++...|..+...... .+++.-. ..--+.++.+++......... .....+...+..|++.
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~------~~~~~l~~~~~~l~~~ 97 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLPASSQVKS------TKRRQLENKIDNFTDA 97 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSCCCCCCCC------HHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCCccccch------HHHHHHHHHHHcCCHH
Confidence 468899999999999999888764432 2222100 000011122222222111111 1223466677888888
Q ss_pred HHHHHHHH
Q 008556 501 ERCIVRLR 508 (561)
Q Consensus 501 ER~VL~LR 508 (561)
++.++.-.
T Consensus 98 ~~~~i~~~ 105 (126)
T 3ivp_A 98 DLVIMESV 105 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
No 473
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=31.62 E-value=26 Score=33.30 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=23.0
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 512 EDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 512 ~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
..+++.|+.++|+.||+|+.+|.+.+++
T Consensus 23 ~~~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 23 SNRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp SSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3446789999999999999999876544
No 474
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=31.61 E-value=3e+02 Score=25.15 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
.+.|.++|++..|++..+|++..+.-.+.+...+
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~ 191 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF 191 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999999999987766665554433
No 475
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.33 E-value=33 Score=31.21 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008556 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 514 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 546 (561)
+...|.++||+.+|||+..|+++ +.+|++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~ki----l~~L~~ 54 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNI----LSVLHK 54 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46789999999999999988765 455655
No 476
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=30.95 E-value=62 Score=29.51 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=28.2
Q ss_pred HHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHhC-CCHHHHHHHHH
Q 008556 493 LLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIFG-LSKERVRQLES 538 (561)
Q Consensus 493 aL~~L~erER~-VL~LRyGL~d~e~~Tl~EIAe~LG-ISrerVRqie~ 538 (561)
.+.-|....|. ||..-.+ ......|..||++.++ ||+.+|++.++
T Consensus 22 ~~~~l~~~tR~~IL~~Ll~-~p~~~~ta~eL~~~l~~lS~aTVyrhL~ 68 (151)
T 3u1d_A 22 RRRFVLHETRLDVLHQILA-QPDGVLSVEELLYRNPDETEANLRYHVD 68 (151)
T ss_dssp HHHHHCCHHHHHHHHHHHH-STTSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHc-CCCCCCCHHHHHHhcCCCCHHHHHHHHH
Confidence 33334444444 4444333 1123479999999999 99999987543
No 477
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.67 E-value=50 Score=25.56 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|..
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 456666677666653321 223567899999999999999999888877653
No 478
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.59 E-value=95 Score=23.63 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhc
Q 008556 421 NHSPDKEDLARRVGITVEKLERLIFIT 447 (561)
Q Consensus 421 gr~Pt~eEIA~~lgis~e~v~~ll~~~ 447 (561)
...-+..|||+.+|++...|...+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANV 55 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346789999999999999998876543
No 479
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.39 E-value=2.1e+02 Score=23.95 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478999999999999999888653
No 480
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.38 E-value=1.7e+02 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=17.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHH
Confidence 578999999999999888877653
No 481
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=30.27 E-value=57 Score=26.27 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
.+++.+..+|...|.- +.. ....-.+||..+|++...|.........|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4777788888877764 111 1123568899999999999999888777654
No 482
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.26 E-value=1.3e+02 Score=25.53 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...|..++..
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 483
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.13 E-value=50 Score=25.33 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 420 GNHSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 420 ~gr~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
.+...+..|||+.+|++...|..++..
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344568999999999999999888764
No 484
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.92 E-value=43 Score=29.52 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHH
Q 008556 490 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLE 537 (561)
Q Consensus 490 L~~aL~~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie 537 (561)
+..+++.|..+-+-.|.... . + .++++.||++.+ |||..++.+.+
T Consensus 16 i~~~l~~lg~kW~l~IL~~L-~-~-g~~rf~eL~~~l~gIs~~~Ls~~L 61 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHM-I-D-GKKRFNEFRRICPSITQRMLTLQL 61 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHH-T-T-SCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHH-h-c-CCcCHHHHHHHhcccCHHHHHHHH
Confidence 45566677776654433322 1 2 479999999999 99998887644
No 485
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=29.69 E-value=88 Score=26.44 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-C----CCHHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-G----LSKERVRQLESRALYRLKQ 546 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~e~~Tl~EIAe~L-G----ISrerVRqie~RALkKLR~ 546 (561)
.|+++|..+|.+-. .+.|+..|.++|.+.+ | .+..+|...+.+-++||..
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999988765 4566889999999865 3 5677888777776666643
No 486
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=29.65 E-value=1.1e+02 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478999999999999999887753
No 487
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.64 E-value=54 Score=25.75 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 547 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 547 (561)
.++.+..+|...|..+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 466666777777753321 123467899999999999999988777777653
No 488
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.14 E-value=82 Score=21.00 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008556 424 PDKEDLARRVGITVEKLERLIFIT 447 (561)
Q Consensus 424 Pt~eEIA~~lgis~e~v~~ll~~~ 447 (561)
-+..+||+.+|++...|..++...
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 579999999999999999887643
No 489
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=29.02 E-value=43 Score=34.96 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008556 486 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 539 (561)
Q Consensus 486 ~~e~L~~aL~--~L~erER~VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 539 (561)
+...+...+. .|+..|-.||..-+. ..+.++|..|||+.+++++.+|..++.|
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 589999888877654 2125799999999999999999655443
No 490
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.69 E-value=89 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999887753
No 491
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.67 E-value=85 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 568999999999999999888753
No 492
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=28.28 E-value=27 Score=31.57 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 515 KPKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 515 e~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
..+|..|+|+.+|||..++|..+...+
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 458999999999999999999988764
No 493
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=28.24 E-value=42 Score=25.54 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
+++.+..+|.-.|.-+.. ......+||..+|+|...|......-..|.|
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 566777788777764321 1224578899999999999999877766654
No 494
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=28.17 E-value=1.7e+02 Score=27.86 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008556 410 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 445 (561)
Q Consensus 410 ~ka~~~l~~e~gr~Pt~eEIA~~lgis~e~v~~ll~ 445 (561)
.++..-+.+......+.++||+.+|+|...+..+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334444444556688999999999999999988865
No 495
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.14 E-value=24 Score=31.72 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008556 516 PKSLSEVGNIFGLSKERVRQLESRAL 541 (561)
Q Consensus 516 ~~Tl~EIAe~LGISrerVRqie~RAL 541 (561)
.+|..|+|+.+|||..++|..+...+
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gl 41 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGL 41 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCC
Confidence 47899999999999999999988765
No 496
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.79 E-value=98 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=25.9
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHH
Q 008556 339 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 379 (561)
Q Consensus 339 rY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~ 379 (561)
......+.++||..+..+.--.--..|.-.-|..|..|...
T Consensus 22 ~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~ 62 (129)
T 1bl0_A 22 DNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS 62 (129)
T ss_dssp TTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH
Confidence 33344588899988877765555555655556666666543
No 497
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=27.67 E-value=47 Score=24.88 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008556 496 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 545 (561)
Q Consensus 496 ~L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 545 (561)
.+++.+..+|...|.-+.. ....-.+||..+|++...|......-..|.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 3567777788877764321 1224578999999999999998866655543
No 498
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=27.50 E-value=51 Score=25.70 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008556 497 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 548 (561)
Q Consensus 497 L~erER~VL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 548 (561)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 456666777777653321 1224578999999999999999988888777643
No 499
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.32 E-value=59 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 422 HSPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 422 r~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..-+..|||+.+|++...|...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999887553
No 500
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.29 E-value=1.5e+02 Score=25.44 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008556 423 SPDKEDLARRVGITVEKLERLIFI 446 (561)
Q Consensus 423 ~Pt~eEIA~~lgis~e~v~~ll~~ 446 (561)
..+..+||+.+|++...+..++..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578999999999999999887753
Done!