BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008557
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF 221
L AAE+G+ V+++++ N + +G H AAK+GH +VK L+SK
Sbjct: 8 LIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
+ D G+T LH A K +++IV LI V +D+ G T LH A K+G +IV+ L+
Sbjct: 66 K-DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
S +G DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 17/149 (11%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ 157
+R I G DS G+ LH AA+ G+ ++++L S A+ ++ K+
Sbjct: 18 DRVKDLIENGADVNASDSDGRT---PLHYAAKEGH-KEIVKLLISKGAD-----VNAKDS 68
Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVS 214
+G TPL+ AA+ GH IV+ ++ + A + A+ +G H AAK+GH +VK L+S
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLIS----KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 215 KDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
K +D G+T L +A + NE+IV
Sbjct: 125 KGADVN-TSDSDGRTPLDLAREHGNEEIV 152
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
A + N+D V +LI V D+ G T LH A K+G +IV+ L+S +G DVN+ +
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
G +PL A K G+ E+ LL GA ++KD G+ P
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
NG H+AA+ GHL V L+ + + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
V +D G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 61 V-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 313 LLKEAGA 319
LL EAGA
Sbjct: 119 LLLEAGA 125
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLVVKALVSKD 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHL V L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
+ DK G+T LH+A + + ++V L+ V +D G T LH+A + G ++
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEV 116
Query: 277 VRCLL 281
V+ LL
Sbjct: 117 VKLLL 121
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG 237
+ A + A +NG H+AA+ GHL V L+ + + DK G+T LH+A +
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 238 QNEDIVLELI 247
+ ++V L+
Sbjct: 112 GHLEVVKLLL 121
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHL-VVKALV 213
+GH +V+ +L+ A + A +NG H+AA+ GHL VVK L+
Sbjct: 77 RNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 109
Query: 168 ESGHALIVEEMLQ 180
+GH +V+ +L+
Sbjct: 110 RNGHLEVVKLLLE 122
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
+ K ++ K LH AAR G+ + V +L+ N A L+ G TPL++AA
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----NNANPNLA--TTAGHTPLHIAA 121
Query: 168 ESGHALIVEEMLQHMNLETA-SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK 226
GH VE +L + E + + + G+ HVAAK G + V L+ + + K
Sbjct: 122 REGH---VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G T LH+AV N DIV +L+ P G T LHIA K+ + ++ R LL G
Sbjct: 179 GLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG- 236
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLL 314
N+ + G +PL +A + G+ E+ +LL
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALL 264
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 14/239 (5%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
ER + ++ GK G LH+A NL V +L + + G TPL++AA
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW------NGYTPLHIAA 220
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
+ + +LQ+ +A+ + G H+AA++GH + AL+ + G +K G
Sbjct: 221 KQNQVEVARSLLQYGG--SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
T LH+ + + + LI+ ++ G T LH+A G ++V+ LL + D
Sbjct: 279 LTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-D 336
Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH---SKDHGKPPSATKQLKQ-TVSDI 342
VN+ K G SPL A + G+T++ +LL + GA+ S D P + K+L +V+D+
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
R + SP G LH+AA+ + +LQ + A+ + +G TPL++AA+
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV------QGVTPLHLAAQ 254
Query: 169 SGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQ 228
GHA +V +L ++ ++G H+ A++GH+ V ++ K T + G
Sbjct: 255 EGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312
Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 288
T LH+A N +V L++ V + G + LH A ++G T IV LL G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASP 370
Query: 289 NSLNKAGESPLDVAEKLGNTELFSLLK 315
N ++ G +PL +A++LG + +LK
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 13/201 (6%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH+A+ G+L V +LQ + N + ETPL++AA +GH + + +LQ N
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQ--N 69
Query: 184 LETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
+ A++ H AA+ GH +VK L+ + + T G T LH+A + + +
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIAAREGHVET 128
Query: 243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
VL L+ + S + KG T LH+A K G+ ++ LL + N+ K G +PL VA
Sbjct: 129 VLALLEKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVA 186
Query: 303 EKLGNTELFS-LLKEAGAAHS 322
N ++ LL G+ HS
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHS 207
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPST 219
L AAE+G+ V+++L++ AS +G H AA+ GH +VK L+SK DP+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 220 GFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
D G+T LH A + +++IV L+ DP+ +D+ G T LH A + G +IV
Sbjct: 66 ---KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIV 119
Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
+ LLS +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 120 KLLLS-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ G LH AA G+ ++++L S A+ + K+ +G TPL+ AA
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGH-KEIVKLLLSKGADP-----NAKDSDGRTPLHYAA 78
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTD 224
E+GH IV+ +L A +G H AA+ GH +VK L+SK DP+T +D
Sbjct: 79 ENGHKEIVKLLLSKGADPNAK--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNT---SD 133
Query: 225 KKGQTALHMAVKGQNEDIV 243
G+T L +A + NE+IV
Sbjct: 134 SDGRTPLDLAREHGNEEIV 152
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 234 AVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
A + N+D V +L+ DP+ D+ G T LH A + G +IV+ LLS +G D N+
Sbjct: 11 AAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAK 66
Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
+ G +PL A + G+ E+ LL GA ++KD G+ P
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 106
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPST 219
L AAE+G+ V+++L+ N + +G H+AA+ GH VVK L+S+ DP+
Sbjct: 8 LIEAAENGNKDRVKDLLE--NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 220 GFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
D G+T LH+A + ++++V L+ DP+ +D+ G T LH+A + G ++V
Sbjct: 66 ---KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV 119
Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
+ LLS +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 120 KLLLS-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 19/150 (12%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEIL-QSCDANEAKDLLSKKN 156
+R + G DS GK LHLAA G+ V +L Q D N K+
Sbjct: 18 DRVKDLLENGADVNASDSDGKT---PLHLAAENGHKEVVKLLLSQGADPN-------AKD 67
Query: 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK 215
+G+TPL++AAE+GH +V+ +L A +G H+AA+ GH VVK L+S+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 216 --DPSTGFRTDKKGQTALHMAVKGQNEDIV 243
DP+T +D G+T L +A + NE++V
Sbjct: 126 GADPNT---SDSDGRTPLDLAREHGNEEVV 152
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
A + N+D V +L+ V D+ G T LH+A + G ++V+ LLS +G D N+ +
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
G++PL +A + G+ E+ LL GA ++KD GK P
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
++GY H+AA++GHL + ++ K + DK G T LH+A + + +IV L++
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
V +D G T LH+A ++G +IV LL G DVN+ +K G++P D+A GN ++
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIDNGNEDIA 150
Query: 312 SLLKEAG 318
+L++A
Sbjct: 151 EVLQKAA 157
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL 231
IVE +L+ A + A ++GY H+AA++GHL + ++ K + DK G+T
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 232 HMAVKGQNEDI 242
+A+ NEDI
Sbjct: 139 DLAIDNGNEDI 149
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK- 89
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
G DVN+ +K G +PL +A + G+ E+ +L +AGA +++D GK P
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 328
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
++GY H+AA++GHL + ++ K + DK G T LH+A + + +IV L++
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
V +D G T LH+A ++G +IV LL G DVN+ +K G++P D+A + G+ ++
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIREGHEDIA 150
Query: 312 SLLKEAG 318
+L++A
Sbjct: 151 EVLQKAA 157
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 13/156 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEVRILM----ANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 58
Query: 187 ASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + A ++GY H+AA++GHL + ++ K + DK G T LH+A + + +IV
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
L++ V +D G T +AI++G I L
Sbjct: 119 VLLKAGADV-NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 29 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 82
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL 231
IVE +L+ A + A ++GY H+AA++GHL + ++ K + DK G+T
Sbjct: 83 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 232 HMAVKGQNEDI 242
+A++ +EDI
Sbjct: 139 DLAIREGHEDI 149
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK- 89
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
G DVN+ +K G +PL +A + G+ E+ +L +AGA +++D GK P
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 328
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.0 bits (175), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF 221
L AAE+G+ V+++++ N + +G H AA+ GH VVK L+SK
Sbjct: 8 LIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
+ D G+T LH A + ++++V LI V +D+ G T LH A + G ++V+ L+
Sbjct: 66 K-DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
S +G DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 17/149 (11%)
Query: 98 ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ 157
+R I G DS G+ LH AA G+ V+++L S A+ ++ K+
Sbjct: 18 DRVKDLIENGADVNASDSDGRT---PLHHAAENGH-KEVVKLLISKGAD-----VNAKDS 68
Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVS 214
+G TPL+ AAE+GH +V+ ++ + A + A+ +G H AA+ GH VVK L+S
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 215 KDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
K +D G+T L +A + NE++V
Sbjct: 125 KGADVN-TSDSDGRTPLDLAREHGNEEVV 152
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
A + N+D V +LI V D+ G T LH A + G ++V+ L+S +G DVN+ +
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
G +PL A + G+ E+ LL GA ++KD G+ P
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 12/163 (7%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKAL 212
+Q+G +PL+VAA G A ++ +L+H A+ ARN + H+A +QGH VVK L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
+ + + D G T L A G + ++V L++ S+ +NKGNTALH A+ +
Sbjct: 139 LDSNAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEK 196
Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
+V LL + G V LNK + +D AE+ N+++ LL+
Sbjct: 197 HVFVVE-LLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 213 VSKDPSTGFR---TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------T 263
++K P++G T + G + LH+A D++ P +LK N G
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLI-------PLLLKHGANAGARNADQAV 121
Query: 264 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
LH+A ++G Q+V+CLL N + +G +PL A G+ EL +LL + GA+
Sbjct: 122 PLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLA + G+ V +L S AK +KK+ G TPL A GH +V +LQH
Sbjct: 123 LHLACQQGHFQVVKCLLDS----NAKP--NKKDLSGNTPLIYACSGGHHELVALLLQH-- 174
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
ASI A N G + H A + H+ V L+ ++ +K+ +TA+ A QN
Sbjct: 175 --GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA--EQNSK 230
Query: 242 IVLELIRPDPSVLKLEDNKGNT 263
I +EL++ PS + D+ T
Sbjct: 231 I-MELLQVVPSCVASLDDVAET 251
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
++GY H+AA++GHL + ++ K + DK G T LH+A + + +IV L++
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
V +D G T LH+A ++G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 105 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 312 SLLK 315
+L+
Sbjct: 163 EILQ 166
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K G LHLAAR G+L ++E+L A+ ++ K+++G TPL++AA GH
Sbjct: 41 NAKDKDGYTPLHLAAREGHL-EIVEVLLKAGAD-----VNAKDKDGYTPLHLAAREGHLE 94
Query: 174 IVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL 231
IVE +L+ A + A ++GY H+AA++GHL + ++ K + DK G+TA
Sbjct: 95 IVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Query: 232 HMAVKGQNEDI 242
+++ NED+
Sbjct: 151 DISIDNGNEDL 161
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ K+++G TPL++AA GH IVE +L+
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLK----AG 70
Query: 187 ASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + A ++GY H+AA++GHL + ++ K + DK G T LH+A + + +IV
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
L++ V +D G TA I+I G + L
Sbjct: 131 VLLKAGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ +K G +PL +A + G+ E+ +L +AGA
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 328
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
+GY H+AA GHL + ++ K+ + +D G T LH+A + +IV L++
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
V DN G+T LH+A K G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 106 V-NAYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLK 315
+L+
Sbjct: 164 ILQ 166
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ A DL G TPL++AA +GH IVE +L+H
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDL------TGITPLHLAAATGHLEIVEVLLKH-- 102
Query: 184 LETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A +G+ H+AAK GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ + +G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNATDNDGYTPLHLAASNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
+ G H+AA GHL + ++ K + D G T LH+A K + +IV L
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
++ V +D G TA I+I G + L
Sbjct: 133 LKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
TD G T LH+A + +IV E++ + + + D G T LH+A G +IV LL
Sbjct: 43 TDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 342
G DVN+ + G +PL +A K G+ E+ +L + HG +A + +T DI
Sbjct: 102 -HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 152
Query: 343 KHD 345
D
Sbjct: 153 SID 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + DN G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 328
DVN+ + G +PL +A G+ E+ +L + GA A+ D P
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTP 116
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + D N A + G TPL++AA SGH IVE +L+H
Sbjct: 21 AARAGQDDEVRILMANGADVNAA-------DNTGTTPLHLAAYSGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
A + A + GY H+AA GHL + ++ K+ + D G T LH+A K +IV
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
L++ V +D G TA I+I G + L
Sbjct: 130 EVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA +G+L V +L+ +A D+ G TPL++AA GH IVE +L
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLL 100
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
+ N + +G H+AAK G+L + ++ K + DK G+TA +++ N
Sbjct: 101 K--NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 240 EDI 242
ED+
Sbjct: 159 EDL 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV L++ V D G T LH+A G +IV LL
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
G DVN+++ G +PL +A K G E+ +L + HG +A + +T DI
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 153
Query: 344 HD 345
D
Sbjct: 154 ID 155
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + DN G T LH+A G +IV LL G
Sbjct: 15 GRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DV++ + G +PL +A G+ E+ +L + GA
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + AR+ G+ H+AA GHL + ++ K+ + D G T LH+A + + +IV
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV- 96
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
E++ + + + D+ G T LH+A K+G +IV LL G DVN+ +K G++ D++
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISID 155
Query: 305 LGNTELFSLLKE 316
GN +L +L++
Sbjct: 156 NGNEDLAEILQK 167
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ AKD L G TPL++AA GH IVE +L+ N
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSL------GVTPLHLAARRGHLEIVEVLLK--N 102
Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
+ +G+ H+AAK+GHL + ++ K+ + DK G+TA +++ NED+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A+D G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEVRILMANGADVNARDF------TGWTPLHLAAHFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + A++ G H+AA++GHL + ++ K+ + +D G T LH+A K + +IV
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV- 129
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
E++ + + + +D G TA I+I G + L
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV E++ + + + +D+ G T LH+A ++G +IV LL
Sbjct: 44 DFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A K G+ E+ +L + GA
Sbjct: 102 NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 324
A + G+ VR L++ G DVN+ + G +PL +A G+ E+ +L + GA ++KD
Sbjct: 21 AARAGQDDEVRILMA-NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 12/125 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA+ G+L ++E+L A+ ++ + G TPL++AA++GH IVE +L
Sbjct: 47 GHTPLHLAAKTGHL-EIVEVLLKYGAD-----VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG 237
+H A + A++ G+ H+AA GHL + ++ K + DK G+TA +++
Sbjct: 101 KH----GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 238 QNEDI 242
NED+
Sbjct: 157 GNEDL 161
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G+ H+AAK GHL + ++ K + D G T LH+A + +IV L++ V
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
+D +G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L +
Sbjct: 107 -NAKDYEGFTPLHLAAYDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LKE 316
L++
Sbjct: 165 LQK 167
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
TD G T LH+A K + +IV L++ V DN G T LH+A G +IV LL
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 102 -HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D G+T LH+A K G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
DVN+ + G +PL +A G+ E+ +L + GA ++KD+
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 47/192 (24%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + +G TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAHDDQGSTPLHLAAWIGHPEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + AR +G+ H+AA GHL + ++ K + D Q A
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLK-----YGADVNAQDAY------------- 112
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
G T LH+A +G +IV LL G DVN+ +K G++ D++
Sbjct: 113 ----------------GLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISID 155
Query: 305 LGNTELFSLLKE 316
GN +L +L++
Sbjct: 156 NGNEDLAEILQK 167
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
+G LHLAA G+ ++E+L A+ ++ ++ +G TPL++AA++GH IVE +
Sbjct: 46 QGSTPLHLAAWIGH-PEIVEVLLKHGAD-----VNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 179 LQHMNLETASIPARNGY--DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236
L++ A + A++ Y H+AA +GHL + ++ K + DK G+TA +++
Sbjct: 100 LKY----GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 155
Query: 237 GQNEDI 242
NED+
Sbjct: 156 NGNEDL 161
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D +G T LH+A + +IV L++ V D G T LH+A G +IV LL
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
G DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI
Sbjct: 103 -GADVNAQDAYGLTPLHLAADRGHLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 153
Query: 344 HD 345
D
Sbjct: 154 ID 155
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D++G+T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G+ H+AA GHL + ++ K+ + D G T LH+A + +IV L++ V
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
+DN G T LH+A +G +IV LL G DVN+ +K G++ D++ GN +L +
Sbjct: 107 NAKDDN-GITPLHLAANRGHLEIVEVLLKY-GADVNAQDKFGKTAFDISINNGNEDLAEI 164
Query: 314 LKE 316
L++
Sbjct: 165 LQK 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ A D L G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLLKN-- 102
Query: 184 LETASIPAR--NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A+ NG H+AA +GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV E++ + + + D G+T LH+A G +IV LL
Sbjct: 44 DVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A G+++++ ++ + + + D G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGRDDEV--RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 324
DVN+ + G +PL +A G+ E+ +L + GA ++KD
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPL++AA GH IVE +L
Sbjct: 80 GSTPLHLAAHFGHL-EIVEVLLKNGAD-----VNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 180 QH 181
++
Sbjct: 134 KY 135
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
+K + D S RTD+ +TALH A + +IV L++ V +D+ G + LHIA
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
GR +IV+ LL ++G VN++N+ G +PL A E+ +L E GA +KDH
Sbjct: 81 ASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GH-LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI----RPDPSVLKLEDN 259
G +VKAL+ K ++ G T LH A +I + L+ PD +D+
Sbjct: 84 GRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-----KDH 137
Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
TA+H A KG ++V LL + N + G +PL +A
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
D + E I D S+ D TALH A G T+IV LL + G+ VN + AG SPL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLH 78
Query: 301 VAEKLGNTELFSLLKEAGA 319
+A G E+ L GA
Sbjct: 79 IAASAGRDEIVKALLVKGA 97
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AA+ GHL + ++ K+ + D G T LH+A K + +IV L++ V
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
+D G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L +
Sbjct: 107 -NADDTIGSTPLHLAADTGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LK 315
L+
Sbjct: 165 LQ 166
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLAAR G+L V +L++ A D G TPL++AA+ GH IVE +L
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDF------SGSTPLHLAAKRGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG 237
++ A + A + G H+AA GHL + ++ K + DK G+TA +++
Sbjct: 101 KY----GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 238 QNEDI 242
NED+
Sbjct: 157 GNEDL 161
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ ++ G+TPL++AA GH IVE +L+ N
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAEDTYGDTPLHLAARVGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
+ +G H+AAK+GHL + ++ K + D G T LH+A + +IV L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
++ V +D G TA I+I G + L
Sbjct: 133 LKYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + ED G+T LH+A + G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
DVN+L+ +G +PL +A K G+ E+ +L + GA + D
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + + +IV L++ V L D G+T LH+A K+G +IV LL
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 103 -GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
+K + D S RTD+ +TALH A + +IV L++ V +D+ G + LHIA
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
GR +IV+ LL +G VN++N+ G +PL A E+ +L E GA +KDH
Sbjct: 81 ASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 GH-LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI----RPDPSVLKLEDN 259
G +VKAL+ K ++ G T LH A +I + L+ PD +D+
Sbjct: 84 GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-----KDH 137
Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
TA+H A KG +++ LL + N + G +PL +A E LL GA
Sbjct: 138 YEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 320 A 320
+
Sbjct: 197 S 197
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
++A G+ E++ E I D S+ D TALH A G T+IV LL + G+ VN
Sbjct: 12 NLAYSGKLEELK-ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK 69
Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA 319
+ AG SPL +A G E+ L GA
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGA 97
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
NG H+AA+ GHL V L+ + + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
V +D G T LH+A + G ++V+ LL
Sbjct: 61 V-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAAR G+L V +L EA ++ K++ G TPL++AA +GH +V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 180 QHMNLETASIPA--RNGYDSFHVAAKQGHL-VVKALV 213
+ A + A +NG H+AA+ GHL VVK L+
Sbjct: 56 E----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 319
G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 320 AHSKD-HGKPP 329
++KD +G+ P
Sbjct: 61 VNAKDKNGRTP 71
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLVVKALVSKD 216
G TPL++AA +GH +V+ +L+ A + A+ NG H+AA+ GHL V L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
+ DK G+T LH+A + + ++V L+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + ++ K G LHLAAR G+L V +L EA ++ K++ G TPL++AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------EAGADVNAKDKNGRTPLHLAA 76
Query: 168 ESGHALIVEEMLQ 180
+GH +V+ +L+
Sbjct: 77 RNGHLEVVKLLLE 89
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
+K + D S RTD+ +TALH A + +IV L++ V +D+ G + LHIA
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
G +IV+ LL ++G VN++N+ G +PL A E+ +L E GA +KDH
Sbjct: 81 ASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 83
Query: 205 G-HLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI----RPDPSVLKLEDN 259
G +VKAL+ K ++ G T LH A +I + L+ PD +D+
Sbjct: 84 GXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-----KDH 137
Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
TA+H A KG ++V LL + N + G +PL +A
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
D + E I D S+ D TALH A G T+IV LL + G+ VN + AG SPL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLH 78
Query: 301 VAEKLGNTELFSLLKEAGA 319
+A G E+ L GA
Sbjct: 79 IAASAGXDEIVKALLVKGA 97
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 9/200 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
N+ P +G+ FH+A G+L VVK+L + + +G T LH+AV +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
++ LI SV +++D LH A G +++ L + VN +K G +PL
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 301 VAEKLGNTELFSLLKEAGAA 320
A G+ + LL E A
Sbjct: 180 HALAEGHGDAAVLLVEKYGA 199
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
D P G H+A GNL E+++S K L+K +G T L++A G
Sbjct: 66 DYPDDSGWTPFHIACSVGNL----EVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKW 119
Query: 174 IVEEMLQHMNLETASIPARNGYD--SFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTA 230
E+ Q + AS+ ++ ++ H AA G L +++ L S DK+G T
Sbjct: 120 F--EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
L A+ + D + L+ + L DNKG A +A+ +
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPS 252
G+ H+AA GHL + ++ K+ + D G T LH+A +G E V+E++ + +
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLE--VVEVLLKNGA 104
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
+ D+ G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
+L++
Sbjct: 164 ILQK 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L++ A D L G TPL++AA+ GH +VE +L+ N
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSL------GVTPLHLAADRGHLEVVEVLLK--N 102
Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
+ NG+ H+AA GHL + ++ K + DK G+TA +++ NED+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ + G TPL++AA GH IVE +L++
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNASDHVGWTPLHLAAYFGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
A + A + G H+AA +GHL V ++ K+ + D G T LH+A + +IV
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
L++ V +D G TA I+I G + L
Sbjct: 131 VLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
+D G T LH+A + +IV E++ + + + +D+ G T LH+A +G ++V LL
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 342
G DVN+ + G +PL +A +G+ E+ +L + HG +A + +T DI
Sbjct: 102 -NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 152
Query: 343 KHD 345
D
Sbjct: 153 SID 155
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
A + G+ VR L++ G DVN+ + G +PL +A G+ E+ +L + GA + D
Sbjct: 21 AARAGQDDEVRILMA-NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
+G H+AA +GHL + ++ K + DK G T LH+A + +IV E++ + +
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIV-EVLLKNGA 104
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
+ D G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
+L++
Sbjct: 164 ILQK 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ ++ G+TPL++AA GH IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
A+ + G H+AA GHL + ++ K+ + TD G T LH+A + +IV L
Sbjct: 75 AA--DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
++ V +D G TA I+I G + L
Sbjct: 133 LKYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 120 GDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
G LHLAA G+L V +L+ D N A + G+TPL++AA GH IVE +
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM-------GDTPLHLAALYGHLEIVEVL 99
Query: 179 LQHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236
L++ A + A + G+ H+AA GHL + ++ K + DK G+TA +++
Sbjct: 100 LKN----GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 237 GQNEDI 242
NED+
Sbjct: 156 NGNEDL 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + ED+ G T LH+A KG +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ +K G++PL +A G+ E+ +L + GA
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 224 DKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
D G+T LH+A +KG E ++E++ + + D G+T LH+A G +IV LL
Sbjct: 44 DDSGKTPLHLAAIKGHLE--IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 102 -NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
++ K GD LHLAA G+L ++E+L A+ ++ + G TPL++AA++GH
Sbjct: 74 NAADKMGDTPLHLAALYGHL-EIVEVLLKNGAD-----VNATDTYGFTPLHLAADAGHLE 127
Query: 174 IVEEMLQH 181
IVE +L++
Sbjct: 128 IVEVLLKY 135
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 9/200 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
N+ P +G+ FH+A G+L VVK+L + + +G T LH+AV +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
++ LI SV +++D LH A G +++ L + VN +K G +PL
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 301 VAEKLGNTELFSLLKEAGAA 320
A G+ + LL E A
Sbjct: 180 HALAEGHGDAAVLLVEKYGA 199
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
D P G H+A GNL E+++S K L+K +G T L++A G
Sbjct: 66 DYPDDSGWTPFHIACSVGNL----EVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKW 119
Query: 174 IVEEMLQHMNLETASIPARNGYD--SFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTA 230
E+ Q + AS+ ++ ++ H AA G L +++ L S DK+G T
Sbjct: 120 F--EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
L A+ + D + L+ + L DNKG A +A+ +
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+ GHL + ++ K + +DK G T LH+A + +IV L++ V
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
+ D +G T LH+A + G +IV LL G DVN+ +K G++ D++ GN +L +
Sbjct: 107 NAM-DYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LKE 316
L++
Sbjct: 165 LQK 167
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ + A D G TPL++ +GH I+E +L++
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWF------GITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
AS ++G+ H+AA +GHL + ++ K + D +G T LH+A + + +IV L
Sbjct: 75 AS--DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
++ V +D G TA I+I G + L
Sbjct: 133 LKYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHL G+L ++E+L A+ ++ ++ G TPL++AA GH IVE +L++
Sbjct: 51 LHLVVNNGHL-EIIEVLLKYAAD-----VNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A + GY H+AA+ GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G T LH+ V + +I+ L++ V D G T LH+A +G +IV LL G
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKY-GA 104
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+++ G +PL +A + G+ E+ +L + GA
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPST 219
TPL+ A GH +V +++++ S+ G H+AA+ GH +V L++K
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 220 GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
D+ G T L A + + D L+ + SV + NTALH A+ G T ++
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
LL G +V++ N GES LD+A++ N + + L+EA A D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
DK+ T LH A D+V I V +L + +T LH A ++G +V L+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
G D + ++ G S + +A + G+T + + L G
Sbjct: 99 -GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 12/204 (5%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
LH A +V E+L S LL +K+Q+G PL+ + I +L M
Sbjct: 6 LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
N+ P +G+ FH+A G+L VVK+L + + +G T LH+AV +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL- 299
++ LI SV +++D LH A G +++ L + VN +K G +PL
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 300 -DVAEKLGNTELFSLLKEAGAAHS 322
+AE G+ + L+++ GA +
Sbjct: 180 HALAEGHGDAAVL-LVEKYGAEYD 202
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 127 AARAGNLSRV-MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNL 184
AARAG V + I D N + G TPL++AA SGH IVE +L+H ++
Sbjct: 21 AARAGQDDEVRILIANGADVNAV-------DNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 185 ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
+ A + G+ H+AA GHL + ++ K + D G T LH+A + +IV
Sbjct: 74 DAADV---YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
L++ V +D G TA I+I G + +
Sbjct: 131 VLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAK 163
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AA GHL + ++ K + D G T LH+A + +IV L++ V
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
D G+T LH+A +G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 107 NAF-DMTGSTPLHLAADEGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA +G+L V +L+ +A D+ G TPL++AA +GH IVE +L++
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVY------GFTPLHLAAMTGHLEIVEVLLKY-- 102
Query: 184 LETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A G H+AA +GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV L++ V D G T LH+A G +IV LL
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 103 -GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
A + G+ VR L++ G DVN+++ G +PL +A G+ E+ +L + GA
Sbjct: 21 AARAGQDDEVRILIA-NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 45/190 (23%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AARAG V ++ + DAN + G TPL++AA GH IVE +L
Sbjct: 9 AARAGQDDEVRILMANGADAN-------AYDHYGRTPLHMAAAVGHLEIVEVLL------ 55
Query: 186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 245
RNG D V A+ D G T LH+A + +IV
Sbjct: 56 ------RNGAD------------VNAV-----------DTNGTTPLHLAASLGHLEIVEV 86
Query: 246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
L++ V +D G T L++A G +IV LL G DVN+ +K G++ D++ +
Sbjct: 87 LLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDI 144
Query: 306 GNTELFSLLK 315
GN +L +L+
Sbjct: 145 GNEDLAEILQ 154
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G+T LHMA + +IV L+R V ++ N G T LH+A G +IV LL
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKY 90
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
G DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI
Sbjct: 91 -GADVNAKDATGITPLYLAAYWGHLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 141
Query: 344 HDVQSQ 349
D+ ++
Sbjct: 142 IDIGNE 147
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + D+ G T LH+A G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 324
DVN+++ G +PL +A LG+ E+ +L + GA ++KD
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ K+ G TPLY+AA GH IVE +L
Sbjct: 68 GTTPLHLAASLGHL-EIVEVLLKYGAD-----VNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 180 QH 181
+H
Sbjct: 122 KH 123
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 182 MNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
+N E AS G+ H+AA GHL + ++ K+ + D G T L +A + +
Sbjct: 40 VNAEDAS-----GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
IV E++ + + + D +G+T LH+A G +IV LL G DVN+ +K G++ D+
Sbjct: 95 IV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDI 152
Query: 302 AEKLGNTELFSLLKE 316
+ GN +L +L++
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L ++E+L A+ ++ + G TPL +AA GH IVE +L++
Sbjct: 51 LHLAAFNGHL-EIVEVLLKNGAD-----VNAVDHAGMTPLRLAALFGHLEIVEVLLKN-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A + G+ H+AA GHL + ++ K+ + DK G+TA +++ NED
Sbjct: 103 --GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ ++ G TPL++AA +GH IVE +L+ N
Sbjct: 21 AARAGRDDEVRILM----ANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGAD 72
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
+ G +AA GHL + ++ K+ + D +G T LH+A + +IV E+
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV-EV 131
Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
+ + + + +D G TA I+I G + L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A G+++++ ++ + + + ED G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGRDDEV--RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+++ AG +PL +A G+ E+ +L + GA
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV L++ V + D+ G T L +A G +IV LL
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ + G +PL +A G+ E+ +L + GA
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
K G T LH A K + + V +L+ V GNT LH+A K G +IV+ LL+ +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ +K G +P +A+K G+ E+ LL GA
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 319
GNT LH A K G + V+ LLS +G DVN+ +K G +PL +A K G+ E+ LL GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 320 --AHSKDHGKPPSATKQ 334
A SKD P K+
Sbjct: 68 VNARSKDGNTPEHLAKK 84
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKAL 212
+++G TPL+ AA++GHA V+++L + A + AR +G H+AAK GH +VK L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
++K R+ K G T H+A K + +IV
Sbjct: 62 LAKGADVNARS-KDGNTPEHLAKKNGHHEIV 91
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 25/115 (21%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK------KNQEGETPLYVAAESGH 171
K G+ LH AA+ G+ A E K LLSK ++++G TPL++AA++GH
Sbjct: 7 KDGNTPLHNAAKNGH------------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSKDPSTGFRT 223
A IV+ +L + A + AR +G H+A K GH +VK L +K R+
Sbjct: 55 AEIVKLLLA----KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VV 209
L+ K+ EG T L++AA+ GH +V+ +L + ++ + G+ A + H+ +V
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLV 127
Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
K L+SK R D + LH A DI E++ L + G++ LHIA
Sbjct: 128 KLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
++ R V LS + DV NK GE+PL A N++++S L+
Sbjct: 186 RENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQ 228
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 34/182 (18%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARN-------------------- 193
++Q +PL+ AAE+GH I ++Q N++T S R
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 194 ----------GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
G H+AAK+GH VV+ L+S D G T + A + ++ D+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
V +L+ S + + DN+ N LH A G I LL+ + D++++N G+SPL +A
Sbjct: 127 V-KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIA 184
Query: 303 EK 304
+
Sbjct: 185 AR 186
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 181 HMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240
HMN + + +N H AA+ GH+ + ++ + + + +T L A + +
Sbjct: 1 HMNFK---MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL 57
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
+ V LI+ +++ +D +G+T LH+A KKG ++V+ LLS +DVN + G +P+
Sbjct: 58 EAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 301 VAEKLGNTELFSLLKEAGA 319
A + + +L LL G+
Sbjct: 117 WATEYKHVDLVKLLLSKGS 135
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
+G H+AA GHL + ++ K + D G T LH+A + +IV L++
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
V + D G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 106 VNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
+L++
Sbjct: 164 ILQK 167
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
TD G T LH+A + +IV L++ V + D G+T LH+A G +IV LL
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 342
G DVN+++ G++PL +A +G+ E+ +L + HG +A + +T DI
Sbjct: 102 -HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 152
Query: 343 KHD 345
D
Sbjct: 153 SID 155
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L+ A D+ G TPL++AA GH IVE +L+H
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDI------XGSTPLHLAALIGHLEIVEVLLKH-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A + G H+AA GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+++ G +PL +A +G+ E+ +L + GA
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
+G H+AA GHL + ++ K + D G T LH+A + +IV L++
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
V + D G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 106 VNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
+L++
Sbjct: 164 ILQK 167
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G+L V +L+ A D++ G TPL++AA GH IVE +L+H
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIM------GSTPLHLAALIGHLEIVEVLLKH-- 102
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A + G H+AA GHL + ++ K + DK G+TA +++ NED
Sbjct: 103 --GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 242 I 242
+
Sbjct: 161 L 161
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
TD G T LH+A + +IV L++ V + D G+T LH+A G +IV LL
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 342
G DVN+++ G++PL +A +G+ E+ +L + HG +A + +T DI
Sbjct: 102 -HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 152
Query: 343 KHD 345
D
Sbjct: 153 SID 155
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D G T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+++ G +PL +A +G+ E+ +L + GA
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+KG T LH+A + +IV L++ V DN G+T LH+A G +IV LL
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ +++G TPL++AA+ H IVE +L+H
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNANDRKGNTPLHLAADYDHLEIVEVLLKH----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + A + G H+AA GHL + ++ K + DK G+TA +++ NED+
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D KGNT LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 345
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
R G H+AA HL + ++ K + D G T LH+A + +IV L++
Sbjct: 45 RKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
V +D G TA I+I G + L
Sbjct: 105 DV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
TD G T LH+A +IV E++ + + + D+ G T LH+A G +IV LL
Sbjct: 35 TDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G DVN+ ++AG +PL +A G E+ +L + GA
Sbjct: 94 -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
NG H+AA G L + ++ K+ + +D G T LH+A + +IV L++
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
V D G T LH+A G+ +IV LL G DVN+ + G + D++ G +L
Sbjct: 98 V-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HGADVNAQDALGLTAFDISINQGQEDLAE 155
Query: 313 LLK 315
+L+
Sbjct: 156 ILQ 158
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
AA AG V ++ + D N D G TPL++AA +G IVE +L++
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDD-------NGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHM-AVKGQNEDIVL 244
AS A G H+AA GHL + ++ K + D+ G T LH+ A+ GQ E ++
Sbjct: 66 NASDSA--GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE--IV 121
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
E++ + + +D G TA I+I +G+ + L
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA G L ++E+L A+ ++ + G TPL++AA GH IVE +L+H
Sbjct: 43 LHLAAANGQL-EIVEVLLKNGAD-----VNASDSAGITPLHLAAYDGHLEIVEVLLKH-- 94
Query: 184 LETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A R G+ H+AA G L + ++ K + D G TA +++ ED
Sbjct: 95 --GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
Query: 242 I 242
+
Sbjct: 153 L 153
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
A G+ VR L++ G DVN+ + G +PL +A G E+ +L + GA
Sbjct: 13 AAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
K L ++ +Q+ T L+ A +GH IVE +LQ +P + G+ H+AA
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 84
Query: 205 GH-LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI----RPDPSVLKLEDN 259
G +VKAL+ K ++ G T LH A +I + L+ PD +D+
Sbjct: 85 GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-----KDH 138
Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
TA+H A KG +++ LL + N + G +PL +A E LL GA
Sbjct: 139 YEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 320 A 320
+
Sbjct: 198 S 198
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
++A G+ E++ E I D S+ D TALH A G T+IV LL + G+ VN
Sbjct: 13 NLAYSGKLEELK-ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK 70
Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA 319
+ AG SPL +A G E+ L GA
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGA 98
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G T LH+A + + +IV L++ V EDN G T LH+A +G +IV LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++G TPL++AA+ GH IVE +L++
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNALDEDGLTPLHLAAQLGHLEIVEVLLKY----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + A + G H+AA +GHL + ++ K + DK G+TA +++ NED+
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D G T LH+A + G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 345
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
+V N G++ D+A G E+ SL++ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G+ +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
+V N G++ D+A G E+ SL++ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
+V N G++ D+A G E+ SL++ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
R N D + G +H AARAG ++ LQ+ N+A ++ ++ EG PL++AA+
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAG----FLDTLQTLLENQAD--VNIEDNEGNLPLHLAAK 112
Query: 169 SGHALIVEEMLQH 181
GH +VE +++H
Sbjct: 113 EGHLRVVEFLVKH 125
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
+V N G++ D+A G E+ SL++ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
+V N G++ D+A G E+ SL++ GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAA 167
R N D + G +H AARAG L + +L+ D N ++ EG PL++AA
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPLHLAA 111
Query: 168 ESGHALIVEEMLQH 181
+ GH +VE +++H
Sbjct: 112 KEGHLRVVEFLVKH 125
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V ++ AN A ++ K++ G TPLY+A GH IVE +L++
Sbjct: 21 AARAGQDDEVRILM----ANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + A + G+ H+AA GHL + ++ K + DK G+TA +++ NED+
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G T L++A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+++ G +PL +A +G+ E+ +L + GA
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D+ G T L++A + +IV L++ V + D G T LH+A G +I LL
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A K + +IV L++ V D+ G T LH+A G +IV LL
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 103 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + A + G H+AA GHL + ++ + + DK G+TA +++ NED+
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AAK+GHL + ++ K + +D G+T LH+A + +IV L+ V
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCL 280
+D G TA I+I G + L
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LHLAA+ G+L ++E+L A+ ++ + G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHL-EIVEVLLKHGAD-----VNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 310 LFSLLKEAGAA 320
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 310 LFSLLKEAGAA 320
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + AR+ G H+AA GHL + ++ + + DK G+TA +++ NED+
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A K + +IV L++ V D G T LH+A G +IV LL
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 103 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LHLAA+ G+L V +L+ A+D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGHLEIVEVLLEY 102
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AAK+GHL + ++ K + D G+T LH+A + +IV L+ V
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCL 280
+D G TA I+I G + L
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A K + +IV L++ V D G T LH+A G +IV LL
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 103 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A RAG V ++ + D N D G TPL++AA+ GH IVE +L+H
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
A + A + G H+AA GHL + ++ + + DK G+TA +++ NED+
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AAK+GHL + ++ K + +D G+T LH+A + +IV L+ V
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCL 280
+D G TA I+I G + L
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LHLAA+ G+L V +L+ A D+ G TPL++AA GH IVE +L++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLAATVGHLEIVEVLLEY 102
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
RG+ LH+A+ G++ V +LQ+ KD G TPL+ A GH +VE +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------HAGWTPLHEACNHGHLKVVELL 62
Query: 179 LQHMNLETASIPARNGYDS---FHVAAKQGHL-VVKALVS 214
LQH L + GY + H AAK GH+ +VK L+S
Sbjct: 63 LQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 223 TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
T+ +G+T LH+A +KG + E + + S ++D+ G T LH A G ++V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 322
+ + VN+ +SPL A K G+ ++ LL GA+ +
Sbjct: 64 QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVV------ 209
N GET L++A+ G VE +LQ N ++ G+ H A GHL V
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 210 -KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
KALV+ +TG++ D + LH A K + DIV L+
Sbjct: 65 HKALVN---TTGYQND----SPLHDAAKNGHVDIVKLLL 96
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LH A G+L V +LQ K L++ + ++PL+ AA++GH IV+ +L +
Sbjct: 47 LHEACNHGHLKVVELLLQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
+ GD LHLA + ME+++ + A L+ +N +TPL++A + I E
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGF------RTDKKGQT 229
+L R+ G H+A +QG L ++++ +T T+ G T
Sbjct: 64 LLG----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
LH+A IV L+ V E G TALH+A+ +V LL G DVN
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 290 SLNKAGESP 298
+ G SP
Sbjct: 179 RVTYQGYSP 187
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLA + ME+++ + A L+ +N +TPL++A + I E +L
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGF------RTDKKGQTAL 231
R+ G H+A +QG L ++++ +T T+ G T L
Sbjct: 63 G----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
H+A IV L+ V E G TALH+A+ +V LL G DVN +
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRV 177
Query: 292 NKAGESP 298
G SP
Sbjct: 178 TYQGYSP 184
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 37/147 (25%)
Query: 102 SFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET 161
+ +G G + +D RG+ LHLA G L+ V + QSC +L N G T
Sbjct: 60 ALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 116
Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF 221
L++A+ G+ IVE LVS
Sbjct: 117 CLHLASIHGYLGIVE----------------------------------LLVSLGADVNA 142
Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIR 248
+ G+TALH+AV QN D+V L++
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 45/206 (21%)
Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
S D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSV 59
Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA 234
VE +LQH G D V AK DK G LH A
Sbjct: 60 VEYLLQH------------GAD---VHAK--------------------DKGGLVPLHNA 84
Query: 235 VK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
G E V EL+ +V+ + D T LH A KG+ +I + LL G D N+
Sbjct: 85 CSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNR 141
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA 319
G +PLD+ K G+T++ LL+ A
Sbjct: 142 DGNTPLDLV-KDGDTDIQDLLRGDAA 166
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 62
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK-GQ 238
QH G D V AK DK G LH A G
Sbjct: 63 QH------------GAD---VHAK--------------------DKGGLVPLHNACSYGH 87
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
E V EL+ +V+ + D T LH A KG+ +I + LL G D N+ G +P
Sbjct: 88 YE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTP 144
Query: 299 LDVAEKLGNTELFSLLKEAGA 319
LD+ K G+T++ LL+ A
Sbjct: 145 LDLV-KDGDTDIQDLLRGDAA 164
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
D QL AA+AG++ V ++ N +D+ +++ TPL+ AA +VE +L
Sbjct: 12 ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 66
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK-GQ 238
QH G D V AK DK G LH A G
Sbjct: 67 QH------------GAD---VHAK--------------------DKGGLVPLHNACSYGH 91
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
E V EL+ +V+ + D T LH A KG+ +I + LL G D N+ G +P
Sbjct: 92 YE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTP 148
Query: 299 LDVAEKLGNTELFSLLKEAGA 319
LD+ K G+T++ LL+ A
Sbjct: 149 LDLV-KDGDTDIQDLLRGDAA 168
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
DK G T LH+A + +IV L++ V + D G T LH+ G +IV LL
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + ED G T LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 345
DVN+++ GE+PL + G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A+ ++ +++ G TPL++AA + H IVE +L++ +
Sbjct: 21 AARAGQDDEV-RILMANGAD-----VNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADV 73
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
+I A G H+ A GHL + ++ K + DK G+TA +++ NED+
Sbjct: 74 NAIDAI-GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G H+AA HL + ++ K+ + D G+T LH+ + +IV L++ V
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCL 280
+D G TA I+I G + L
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY--DSFHVAAKQGHLVVK 210
++ +++G+TPL++A G+ V ++ + N H+A V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 211 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLE--DNKGNTALHI 267
L+ ++ D+ GQTA H+A + ++ + L+ P L LE + G TALH+
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 319
A+ + V+ LL G D+++++ K+G SPL A + + + LL + GA
Sbjct: 123 AVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 120 GDLQLHLAARAGNLS---RVMEILQSCDANEAKDLLSKKNQEGETPLYVAA----ESGHA 172
GD LH+A GNL R++ + Q + L N +TPL++A S
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAK-QGHLVVKALVSKDPSTGFRTDKK---GQ 228
L+V M L+ R+G + H+A + + ++AL+ + + G
Sbjct: 64 LLVTAGASPMALD------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117
Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 288
TALH+AV + ++ V L+ + ++ G + L A++ +V+ LL G +V
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANV 176
Query: 289 NSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
N+ +G S L A G L L +GA
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 198 FHVAAKQGHL--VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 255
H AAK+G+L + + L ++ G DK G TAL+ A G ++DIV E + P++
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 256 LEDNK-GNTALHIAIKKGRTQIVRCLLS 282
+ NK G+TALH A KG IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
D LH AA+ GNLS + E L + + ++ ++ G T LY A GH IVE +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Query: 181 HMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKK 226
N+E + +N G + H AA +G+ +V+ L++K T R +K
Sbjct: 128 QPNIE---LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
DVN+ +K G++ D++ GN +L +L++A
Sbjct: 60 DVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
++GY H+AA++GHL + ++ K + DK G+TA +++ NED+
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 83
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
A + G+ VR L++ G DVN+ +K G +PL +A + G+ E+ +L +AGA
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
AARAG V IL + A+ ++ K+++G TPL++AA GH IVE +L+
Sbjct: 9 AARAGQDDEV-RILMANGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 40/209 (19%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E N + P G + LH AA G L + E L S A+ + N EG+TPL +A
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLD-IAEYLISQGAH-----VGAVNSEGDTPLDIAE 147
Query: 168 ESGHALIVEEML--QHMNLETASI--------PARNGYDSFHVAAKQGHLVVKALVSKDP 217
E +++ + Q +++E A AR +S H+
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI----------------- 190
Query: 218 STGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
R K G TALH+A KG E VL+L+ + ++D G T LH A G+ +
Sbjct: 191 -NDVRHAKSGGTALHVAAAKGYTE--VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 277 VRCLLSIEGI-DVNSLNKAGESPLDVAEK 304
R L +E + D+ ++NK G++ DVA++
Sbjct: 248 CRIL--VENLCDMEAVNKVGQTAFDVADE 274
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 39/218 (17%)
Query: 127 AARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
A +G+ V+ +L+ D N A N +G T L+ A + +V+ +++ N
Sbjct: 47 ACSSGDTEEVLRLLERGADINYA-------NVDGLTALHQACIDDNVDMVKFLVE--NGA 97
Query: 186 TASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKG------Q 238
+ P G+ H AA G+L + + L+S+ G + +G T L +A + Q
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQ 156
Query: 239 NE----DIVLELIRPDPSVLKLEDNK----------------GNTALHIAIKKGRTQIVR 278
NE + +E R + + L D + G TALH+A KG T++++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
L+ DVN + G +PL A G E +L E
Sbjct: 217 LLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
A+ + + LL D+++ G +PL +A +L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 194 GYDSFHVAAKQGH-----LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 248
G H+AA+ GH ++++A VS+D T K +T LHMA + +IV L++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-----KVDRTPLHMAASEGHANIVEVLLK 88
Query: 249 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 308
V +D TALH A + ++V L+ G DV++ +K ++ D++ GN
Sbjct: 89 HGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNE 146
Query: 309 ELFSLLK 315
+L +L+
Sbjct: 147 DLAEILQ 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LHLAA+ G+ S +L++ + +A+ + + TPL++AA GHA IVE +L+H
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKH-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
A + A++ + H A + H V L+ K + K +TA +++ NED
Sbjct: 90 --GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147
Query: 242 I 242
+
Sbjct: 148 L 148
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AARAG V IL + A D L G +PL++AA+ GH E +L+
Sbjct: 9 AARAGQDDEV-RILMANGAPFTTDWL------GTSPLHLAAQYGHFSTTEVLLR----AG 57
Query: 187 ASIPARNGYD--SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
S AR D H+AA +GH + ++ K + D TALH A + ++++V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
LI+ V + TA I+I G + L
Sbjct: 118 LLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLK 315
DVN+ +K G++ D++ GN +L +L+
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 13 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
+NG H+AA+ GHL V L+ + + DK G+TA +++ NED+
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLA 88
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 13 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
DK G T LH+A + + ++V L+ V +D G TA I+I G + L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
A+ + + L+ D+++ G +PL +A +L
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
++ + I S+ D G TALH+A + R+ + LL D N + G +PL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHA 64
Query: 302 AEKLGNTELFSLL 314
A +F +L
Sbjct: 65 AVSADAQGVFQIL 77
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSV 253
S H A QG ++ A + + TD++G T L M + V+E + DP +
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 80
Query: 254 LKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
L KG +AL +A KG T IV+ LL G+DVN + G +PL A + +
Sbjct: 81 L----GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVK 135
Query: 313 LLKEAGA 319
+L E+GA
Sbjct: 136 MLLESGA 142
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ N + + + +A +G+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLACSKGY 97
Query: 207 L-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 263
+VK L+ D G T L AV G + V L+ DP++ E + G
Sbjct: 98 TDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYN 153
Query: 264 ALHIAIKKGRTQI 276
++ +A+ G +
Sbjct: 154 SMDLAVALGYRSV 166
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D +G TAL AVK I +L+ +V +D G T L +I G +++ LL
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G +VN N GE+PL VA K G +E+ L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 255 KLEDN--KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
KLED +G+TAL A+K R I LLS +G +VN+ + +G++PL + G +E+
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 313 LLKEAGA 319
L E GA
Sbjct: 119 FLLEHGA 125
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
++ +N EGETPL VA++ G + IV+++L+ A I AR+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLEL----GADISARD 164
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
A+ + + L+ D+++ G +PL +A +L
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSV 253
S H A QG ++ A + + TD++G T L M + V+E + DP +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 64
Query: 254 LKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
L KG +AL +A KG T IV+ LL G+DVN + G +PL A + +
Sbjct: 65 L----GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 313 LLKEAGA 319
+L E+GA
Sbjct: 120 MLLESGA 126
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ N + + + +A +G+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLACSKGY 81
Query: 207 L-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 263
+VK L+ D G T L AV G + V L+ DP++ E + G
Sbjct: 82 TDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYN 137
Query: 264 ALHIAIKKGRTQI 276
++ +A+ G +
Sbjct: 138 SMDLAVALGYRSV 150
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
A+ + + L+ D+++ G +PL +A +L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 211 ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
AL DPS T + + L A + NE+ ++ L+ P D + +T LH+A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
R +IV+ LL G DV++ +K G PL A G+ E+ LL + GA
Sbjct: 67 GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 70/177 (39%), Gaps = 44/177 (24%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AAR+GN ++M +L + N + TPL++AA IV+ +LQH
Sbjct: 31 AARSGNEEKLMALLTPLNVN-----CHASDGRKSTPLHLAAGYNRVRIVQLLLQH----- 80
Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK-GQNEDIVLE 245
G D V AK DK G LH A G E V E
Sbjct: 81 -------GAD---VHAK--------------------DKGGLVPLHNACSYGHYE--VTE 108
Query: 246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
L+ + + D T LH A K R ++ LLS G D +N G+S +D+A
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMA 164
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 48/232 (20%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
R LHLAA N R++++L A+ + K++ G PL+ A GH + E +
Sbjct: 57 RKSTPLHLAA-GYNRVRIVQLLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 179 LQHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA-- 234
L+H A + A + + H AA + + V +L+ + + G++A+ MA
Sbjct: 111 LKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166
Query: 235 ----------VKGQN--------------EDIVLELIRPDPSVLKLEDNKGNTALHIAI- 269
KG + + + LE+I + TALH A+
Sbjct: 167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK------QPQSHETALHCAVA 220
Query: 270 --KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
R Q+ LL +G +VN NK +PL VA + + ++ +L + GA
Sbjct: 221 SLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 18/106 (16%)
Query: 135 RVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN- 193
+V E+L AN +++KN++ TPL+VAAE H ++E + +H A + A +
Sbjct: 228 QVAELLLRKGAN-----VNEKNKDFMTPLHVAAERAHNDVMEVLHKH----GAKMNALDS 278
Query: 194 -GYDSFHVAAKQGHL-VVKALVS--KDPST----GFRTDKKGQTAL 231
G + H AA GHL + L+S DPS GF + G A+
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
+D + T LH+A G N +++L+ + + +D G LH A G ++ LL
Sbjct: 54 SDGRKSTPLHLAA-GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G VN+++ +PL A E+ SLL GA
Sbjct: 113 -HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
+K T LH+A + + D V+E++ + + D+ G TALH A G Q R LLS
Sbjct: 244 NKDFMTPLHVAAERAHND-VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
G D + ++ G + A ++GN + +L E+ + D
Sbjct: 303 -GSDPSIISLQGFT----AAQMGNEAVQQILSESTPMRTSD 338
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLS-KKNQEGETPLYVAAESGHA---LIVEEMLQHM 182
AAR +L++V + L A ++++ K+ Q ET L+ A S H + E +L+
Sbjct: 185 AAREADLAKVKKTL-------ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-- 235
Query: 183 NLETASIPARNG--YDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH-MAVKGQN 239
+ A++ +N HVAA++ H V ++ K + D GQTALH A+ G
Sbjct: 236 --KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 240 EDIVLEL-IRPDPSVLKLE 257
+ L L DPS++ L+
Sbjct: 294 QTCRLLLSYGSDPSIISLQ 312
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D G T LH+A + +IV E++ + + + N G T LH+A +IV LL
Sbjct: 44 DYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + D G+T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 345
DVN+ G +PL +A + E+ +L + HG +A + +T DI D
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
G+ H+AA GHL + ++ K+ + T G+T LH+A + +IV L++ V
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCL 280
+D G TA I+I G + L
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
G LHLAA G+L ++E+L A+ ++ G TPL++AA + H IVE +L
Sbjct: 47 GHTPLHLAAMLGHL-EIVEVLLKNGAD-----VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 180 QH 181
+H
Sbjct: 101 KH 102
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 18/195 (9%)
Query: 92 SFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL 151
+FR + R L ++ + G+ LH + N V ++L D+ K
Sbjct: 91 TFRAMSARLLDYV--------VNIADSNGNTALHYSVSHANFPVVQQLL---DSGVCK-- 137
Query: 152 LSKKNQEGETPLYVAAESGHAL--IVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL- 207
+ K+N+ G +P+ + A + +E +LQ L + A + G + +A G +
Sbjct: 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD 197
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
VVKAL++ + + D G TAL A + +++I L+ + L D G+TAL +
Sbjct: 198 VVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256
Query: 268 AIKKGRTQIVRCLLS 282
A+ G+++I L S
Sbjct: 257 ALDAGQSEIASMLYS 271
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 188 SIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMA----VKGQNE-D 241
+I NG + H + + VV+ L+ + ++ G + + + +K Q++ +
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIE 164
Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
VL+L R ++ G TAL +A+ GR +V+ LL+ E DVN + G + L
Sbjct: 165 TVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTALMC 222
Query: 302 AEKLGNTELFSLL 314
A + G+ E+ LL
Sbjct: 223 ACEHGHKEIAGLL 235
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299
V+ + D+ GNTALH ++ +V+ LL V+ N+AG SP+
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI 149
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 256
S H A QG ++ A + + TD++G T L M + V+E + + + +L
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 62
Query: 257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
+AL +A KG T IV+ LL G+DVN + G +PL A + + +L E
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 317 AGA 319
+GA
Sbjct: 122 SGA 124
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
E +++++ ++EG TPL AA G +VE +LQ N + + + +A +G+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLACSKGY 79
Query: 207 L-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 263
+VK L+ D G T L AV G + V L+ DP++ E + G
Sbjct: 80 TDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYN 135
Query: 264 ALHIAIKKGRTQIVRCLLS 282
++ +A+ G + + + S
Sbjct: 136 SMDLAVALGYRSVQQVIES 154
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
G G+ LH+AA NL M +L + ++ + EG+T L++A + + +V
Sbjct: 34 GAMGETALHIAALYDNLEAAM-VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236
+L AS+ AR FH + +L+ G+ L A
Sbjct: 93 ALLA----RGASVSARATGSVFHY--RPHNLIYY----------------GEHPLSFAAC 130
Query: 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI----KKGRTQIVRCLLSIEGID-VNSL 291
+E+IV LI + + +D+ GNT LHI I K Q+ LLS +G D + SL
Sbjct: 131 VGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189
Query: 292 ----NKAGESPLDVAEKLGNTELFSLLKE 316
N G +P +A GN +F L +
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS 218
E+PL +AA+ + ++L+ E A G + H+AA +L L+ P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPE 62
Query: 219 TGFRTDK----KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
F +GQTALH+AV QN ++V L + +G +
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRAL----------------------LARGAS 100
Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
R S+ ++L GE PL A +G+ E+ LL E GA
Sbjct: 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 18/181 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A G+LS V +L+ + A+ ++ + TPL+ A SG V +LQH
Sbjct: 40 LHEACLGGHLSCVKILLK----HGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQH-- 91
Query: 184 LETASI-PARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
AS+ P + H AA++GH+ V +L++ + + G T L++A + Q
Sbjct: 92 --GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRA 148
Query: 242 IVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
V +L+ S + KG ++ LH A+ + ++ + CLL G D + N G+ P++
Sbjct: 149 CVKKLLE---SGADVNQGKGQDSPLH-AVARTASEELACLLMDFGADTQAKNAEGKRPVE 204
Query: 301 V 301
+
Sbjct: 205 L 205
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 43/188 (22%)
Query: 120 GD-LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
GD L +H A G L ++ E L+ D +L++K ++ G TPL A+ G
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGE------- 48
Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
+ET G D H+ AK+ ++AL +A G
Sbjct: 49 -----IETVRFLLEWGADP-HILAKER----------------------ESALSLASTGG 80
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
DIV L+ D + + D G T L A++ + V LL+ G D+ + +G +P
Sbjct: 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTP 138
Query: 299 LDVAEKLG 306
+D+A LG
Sbjct: 139 MDLAVALG 146
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ + + S +TD+ G TALH+A D L+ ++DN G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
A+ + + L+ D+++ G +PL +A +L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 81
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLK 315
DV + +K G++ D++ GN +L +L+
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 31 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
+NG H+AA+ GHL V L+ + + DK G+TA +++ NED+
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
AARAG V IL + A+ ++ K++ G TPL++AA +GH +V+ +L+
Sbjct: 31 AARAGQDDEV-RILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
DK G T LH+A + + ++V L+ V +D G TA I+I G + L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
LH A G+LS V +L+ + A+ ++ + TPL+ A SG V +LQH
Sbjct: 96 LHEACLGGHLSCVKILLK----HGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQH-- 147
Query: 184 LETASI-PARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
AS+ P + H AA++GH+ V +L++ + + G T L++A + Q
Sbjct: 148 --GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRA 204
Query: 242 IVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
V +L+ S + KG ++ LH ++ ++ CLL G D + N G+ P++
Sbjct: 205 CVKKLLE---SGADVNQGKGQDSPLHAVVRTASEELA-CLLMDFGADTQAKNAEGKRPVE 260
Query: 301 V 301
+
Sbjct: 261 L 261
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 217 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 161 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 220
Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 221 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 217 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 239
Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 240 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 43/188 (22%)
Query: 120 GD-LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
GD L +H A G L ++ E L+ D +L++K ++ G TPL A+ G
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGE------- 48
Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
+ET G D H+ AK+ ++AL +A G
Sbjct: 49 -----IETVRFLLEWGADP-HILAKER----------------------ESALSLASTGG 80
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
DIV L+ D + + D G T L A+ + V LL+ G D+ + +G +P
Sbjct: 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLA-RGADLTTEADSGYTP 138
Query: 299 LDVAEKLG 306
+D+A LG
Sbjct: 139 MDLAVALG 146
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
++ G+TAL + + G + + LEL++ S ++D G + +H A + G ++ L+
Sbjct: 39 NRFGKTALQVMMFG-SPAVALELLKQGASP-NVQDASGTSPVHDAARTGFLDTLKVLVE- 95
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
G DVN+L+ G P+ +A + G++ + S L H +D
Sbjct: 96 HGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRD 136
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
++ G+TAL + + G + + LEL++ S ++D G + +H A + G ++ L+
Sbjct: 41 NRFGKTALQVMMFG-SPAVALELLKQGASP-NVQDASGTSPVHDAARTGFLDTLKVLVE- 97
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
G DVN+L+ G P+ +A + G++ + S L H +D
Sbjct: 98 HGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRD 138
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 228 QTALHMAVKGQNEDI--VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
+TALH+AV+ + +++ + + L + KG+TALH + ++ LL +
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
+ N++GE+PLD+A++L + LL +A
Sbjct: 230 -SIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
++ G+TAL + + G I LEL++ S ++D G + +H A + G ++ L+
Sbjct: 39 NRFGKTALQVMMFGSTA-IALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVE- 95
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
G DVN + G P+ +A + G+T + S L H +D
Sbjct: 96 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 136
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS 214
++ G +P++ AA +G ++ +++H ++P G H+A ++GH V + ++
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 215 KDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
+ S R D +G T L +A++ +D+V
Sbjct: 128 AE-SDLHRRDARGLTPLELALQRGAQDLV 155
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + + P G L +HLA + G+ + V + D L +++ G TPL +A
Sbjct: 95 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD-------LHRRDARGLTPLELAL 147
Query: 168 ESGHALIVEEMLQHM 182
+ G +V+ + HM
Sbjct: 148 QRGAQDLVDILQGHM 162
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 256 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL-FSLL 314
LE+ + L A +G Q VR LL E + ++LN+ G++ L V G+T + LL
Sbjct: 3 LEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL 61
Query: 315 KEAGAAHSKD 324
K+ + + +D
Sbjct: 62 KQGASPNVQD 71
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
++ G+TAL + + G I LEL++ S ++D G + +H A + G ++ L+
Sbjct: 33 NRFGKTALQVMMFGSTA-IALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVE- 89
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
G DVN + G P+ +A + G+T + S L H +D
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS 214
++ G +P++ AA +G ++ +++H ++P G H+A ++GH V + ++
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 215 KDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
+ S R D +G T L +A++ +D+V
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLV 149
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
E + + P G L +HLA + G+ + V + D L +++ G TPL +A
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD-------LHRRDARGLTPLELAL 141
Query: 168 ESGHALIVEEMLQHM 182
+ G +V+ + HM
Sbjct: 142 QRGAQDLVDILQGHM 156
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 201 AAKQGHLVVKALVSKD-----------PSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 248
A + HL++KA+ ++D + F+ ++ G T LH AV+ EDIV L+R
Sbjct: 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81
Query: 249 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
DP + K G T +A G ++++ LS +G DVN + G + A G
Sbjct: 82 GADPVLRK---KNGATPFILAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGK 137
Query: 308 TELFSLLKEAGA 319
+ L + GA
Sbjct: 138 VKALKFLYKRGA 149
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 192 RNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELI 247
+ G + AA++GH+ V+K L+ + + D G+ AL H + + D+ + L+
Sbjct: 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Query: 248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
+ + + +G T L +A++K +V+ LL E I++N + G++ L +A +L
Sbjct: 226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 285
Query: 308 TELFSLLKEAGAA 320
++ LL + GA+
Sbjct: 286 KKIAELLCKRGAS 298
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 218 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
S+G R + L AV+ ++ D+V +L+ +V E+ G T LH A++ R IV
Sbjct: 16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 75
Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
LL G D K G +P +A G+ +L L GA
Sbjct: 76 ELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDP 217
G TPL+ A + IVE +L+H + +NG F +AA G + ++K +SK
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 218 STGFRTDKKGQTA-LHMAVKGQNEDIVLELIRPDPSVLKL---EDNK-----GNTALHIA 268
D G TA + AV G+ + + R L+ ED + G TAL A
Sbjct: 117 DVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299
+KG ++++ LL G DVN+ + G + L
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 201 AAKQGHLVVKALVSKD-----------PSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 248
A + HL++KA+ ++D + F+ ++ G T LH AV+ EDIV L+R
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 249 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
DP + K G T +A G ++++ LS +G DVN + G + A G
Sbjct: 62 GADPVLRK---KNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGK 117
Query: 308 TELFSLLKEAGA 319
+ L + GA
Sbjct: 118 VKALKFLYKRGA 129
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 192 RNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELI 247
+ G + AA++GH+ V+K L+ + + D G+ AL H + + D+ + L+
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Query: 248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
+ + + +G T L +A++K +V+ LL E I++N + G++ L +A +L
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265
Query: 308 TELFSLLKEAGAA 320
++ LL + GA+
Sbjct: 266 KKIAELLCKRGAS 278
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDP 217
G TPL+ A + IVE +L+H + +NG F +AA G + ++K +SK
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 218 STGFRTDKKGQTA-LHMAVKGQNEDIVLELIRPDPSVLKL---EDNK-----GNTALHIA 268
D G TA + AV G+ + + R L+ ED + G TAL A
Sbjct: 97 DVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299
+KG ++++ LL G DVN+ + G + L
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL---- 281
KG+TALH A + N IV L+ S +D G T + +A ++GR ++V L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 282 SIEGIDV 288
S+E +D
Sbjct: 338 SVEAVDA 344
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 224 DKKGQTALHMAVKGQNEDIVLEL---------IRPDPSVLK-LEDNKGNTALHIAIKKGR 273
D+ G TAL + + D V + D + K E KG TALH A +
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
IV+ L+ +G + + ++ G++P+ +A + G E+ L + GA+
Sbjct: 292 XPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
KDS +G LH AA+ N V ++ +N+ K++++G+TP+ +AA+ G
Sbjct: 272 KDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK-----DKQDEDGKTPIXLAAQEGRI 326
Query: 173 LIVEEMLQ 180
+V ++Q
Sbjct: 327 EVVXYLIQ 334
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 327
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLA + + +L +E DL +N G+T L++AA G A VE++
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGEASTVEKL- 64
Query: 180 QHMNLETASIPARNGYDSFHVAAK-QGHLVVKALV------SKDPSTGFRTDKKGQTA-- 230
+ + R G+ + H+A + + H L+ +D S + T + T
Sbjct: 65 -YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 231 --LHMAVKGQNEDIVLELIRPDPSVLKLE--DNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
AV Q E R + L+LE + G+T LH+A+ ++VR LL G
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGA 182
Query: 287 DVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGA 319
D+N G +PL +A + + LL +AGA
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 327
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
GD LHLA + + +L +E DL +N G+T L++AA G A VE++
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGEASTVEKL- 64
Query: 180 QHMNLETASIPARNGYDSFHVAAK-QGHLVVKALV------SKDPSTGFRTDKKGQTA-- 230
+ + R G+ + H+A + + H L+ +D S + T + T
Sbjct: 65 -YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 231 --LHMAVKGQNEDIVLELIRPDPSVLKLE--DNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
AV Q E R + L+LE + G+T LH+A+ ++VR LL G
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGA 182
Query: 287 DVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGA 319
D+N G +PL +A + + LL +AGA
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
D++ +H+A +KG+T VR L+ G+ N+ G + L +A K G + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 318 GAAHSKDHGKPP 329
G HS HG+ P
Sbjct: 76 GEVHSLWHGQKP 87
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALV 213
K + E ++VAA G V +++ + +I R G + H+A K G + +
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
Query: 214 SKDPSTG-FRTDKKGQTALHMAVKGQNEDIVLELIR--------PDPSVLKLEDN----- 259
+ S G + GQ +H+AV D+V+ L+ P+ S+L D
Sbjct: 73 A---SVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPE-SLLNECDEREVNE 128
Query: 260 --------KGNTALHIAIKKGRTQI--VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
KG TALH + G + ++ L+ + G + +KA E+PL A + N E
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXRAXEFRNRE 187
Query: 310 LFSL 313
L
Sbjct: 188 ALDL 191
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE- 316
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 317 -AGAAHSKDHGKPP 329
A +HG P
Sbjct: 90 KADINAVNEHGNVP 103
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 41/178 (23%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKA 211
L++ + G +PL+ A G + +VE ++ + A I N D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLI----MRGARINVMNRGDD-------------- 68
Query: 212 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
T LH+A + DIV +L++ + + ++ GN LH A
Sbjct: 69 -----------------TPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFW 110
Query: 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP 329
G+ Q+ L++ G V+ NK GE P+D A+ L LL+E ++ + P
Sbjct: 111 GQDQVAEDLVA-NGALVSICNKYGEMPVDKAK----APLRELLRERAEKMGQNLNRIP 163
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 38 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE- 316
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 317 -AGAAHSKDHGKPP 329
A +HG P
Sbjct: 95 KADINAVNEHGNVP 108
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 41/178 (23%)
Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKA 211
L++ + G +PL+ A G + +VE ++ + A I N D
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLI----MRGARINVMNRGDD-------------- 73
Query: 212 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
T LH+A + DIV +L++ + + ++ GN LH A
Sbjct: 74 -----------------TPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFW 115
Query: 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP 329
G+ Q+ L++ G V+ NK GE P+D A+ L LL+E ++ + P
Sbjct: 116 GQDQVAEDLVA-NGALVSICNKYGEMPVDKAK----APLRELLRERAEKMGQNLNRIP 168
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
LH A R G S V+E+L A ++ N+ +TPL++AA GH IV+++LQ+
Sbjct: 43 LHWACREGR-SAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY--DSFHVAAKQGHLVVKAL 212
+N ++P A G I+ ML+H T + N Y ++ AA++GH+ L
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHA---TPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 213 VSKD--PSTGFRTDKKGQTALHMAV---KGQN--EDIVLELIRPDPSVLKLEDNKGNTAL 265
+ +D F+ D G TAL AV +G +DIV +L+ + + ++DN G TA+
Sbjct: 125 LLEDGREDIDFQNDF-GYTALIEAVGLREGNQLYQDIV-KLLMENGADQSIKDNSGRTAM 182
Query: 266 HIAIKKGRTQIVRCL 280
A +KG T+I + L
Sbjct: 183 DYANQKGYTEISKIL 197
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKE 316
D +GNT L+IA+ +I + L+ G D+N N +SP A G TE+ + +LK
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 317 A 317
A
Sbjct: 95 A 95
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
D +G T L++AV + +I LI + L+++ ++ A +GRT+I+ +L
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
D+N N+ G + L A + G+ + LL E G
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 18/198 (9%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
AA + +V EILQ + + + EG TPL +A + I + ++
Sbjct: 12 AANQRDTKKVKEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALIDR----G 62
Query: 187 ASIPARNGY-DS-FHVAAKQGHLVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIV 243
A I +N DS + A QG + A + K + + ++ G AL A + + D V
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 244 LELIRPDPSVLKLEDNKGNTAL--HIAIKKGRT---QIVRCLLSIEGIDVNSLNKAGESP 298
L+ + +++ G TAL + +++G IV+ L+ G D + + +G +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTA 181
Query: 299 LDVAEKLGNTELFSLLKE 316
+D A + G TE+ +L +
Sbjct: 182 MDYANQKGYTEISKILAQ 199
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
A D++S E ETP + AA + ++L+ +++ R VA
Sbjct: 37 AADVVS----EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTAL--LFVAGLGSDK 90
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ L R + G TALHMA ++V L+ + ++ED +G TAL +
Sbjct: 91 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALEL 149
Query: 268 A 268
A
Sbjct: 150 A 150
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLLS 282
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 73 DENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNT 308
+ G D+ ++ G + L++A ++ T
Sbjct: 132 L-GADIEVEDERGLTALELAREILKT 156
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
A D++S E ETP + AA + ++L+ +++ R VA
Sbjct: 38 AADVVS----EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTAL--LFVAGLGSDK 91
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
V+ L R + G TALHMA ++V L+ + ++ED +G TAL +
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALEL 150
Query: 268 A 268
A
Sbjct: 151 A 151
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLL 281
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 73 VDENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 282 SIEGIDVNSLNKAGESPLDVAEKL 305
+ G D+ ++ G + L++A ++
Sbjct: 132 EL-GADIEVEDERGLTALELAREI 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS 218
G TPL +AA G L E +++ TA V+ L+++
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQ-------------------VISDLLAQGAE 42
Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
DK G+T+LH+A + D L+ +DN G T LH A+ + +
Sbjct: 43 LNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQ 101
Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKL 305
LL ++N+ G +PL +A +L
Sbjct: 102 ILLRNRATNLNARMHDGTTPLILAARL 128
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
G T L +A + E +V +LI D + DN G TALH A T+ V LL +
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILL-MHH 174
Query: 286 IDVNSLNKAGESPLDVAEKLGNTE 309
+ ++ + E+PL +A + G+ E
Sbjct: 175 ANRDAQDDKDETPLFLAAREGSYE 198
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
K G+ LHLAAR +L + DAN ++ G TPL+ AA + A+ V
Sbjct: 49 KTGETSLHLAARFARADAAKRLLDAGADAN-------SQDNTGRTPLH-AAVAADAMGVF 100
Query: 177 EMLQHMNLETASIPARNGYDSFHVAAK---QGHLVVKALVSKDPSTGFRTDKKGQTALHM 233
++L + +G +AA+ +G +V+ L++ D D G+TALH
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEG--MVEDLITADADINA-ADNSGKTALHW 157
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
A N + V L+ + +D+K T L +A ++G + + LL
Sbjct: 158 AAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLD 205
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
DPS + +G TALH AI IV L++ G +VNS + G +PL A +T
Sbjct: 46 DPS---QPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTV 101
Query: 310 LFSLLKEAGAA 320
+ L + GAA
Sbjct: 102 ICMALVQHGAA 112
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 201 AAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 257
AA G L VV+ V + DPS + +++G TALH A+ G N IV LI +V
Sbjct: 28 AALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITAGANV-NSP 83
Query: 258 DNKGNTALHIAIKKGRTQIVRCLL 281
D+ G T LH A T I L+
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALV 107
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+ A
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
+ L A +G+ + VR LL G D N+LN+ G P+ V +G+ ++ LL GA
Sbjct: 13 DAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGA 68
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 196 DSFHVAAKQGHLVVKALVSKDPSTGFR 222
DS HV +GH++ + S++P GF+
Sbjct: 417 DSAHVPCPRGHVIAARITSENPDEGFK 443
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 194 GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 240
G+ + H+A ++ L VK LV R + G+ L +A +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 241 DIVLELIRP--DPSVLKLEDNKGNTALH----------------IAIKKGRTQI-VRCLL 281
D+V L+ P+ L+ D+ GNT LH I + G Q+ R
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
+++ +++ N G +PL +A K G E+F
Sbjct: 210 TVQLEEIS--NHQGLTPLKLAAKEGKIEIF 237
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G LH A G+ +I+ LL ++G D+N+ +K +PL A G+ LL GA
Sbjct: 40 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
G LH A G+ +I+ LL ++G D+N+ +K +PL A G+ LL GA
Sbjct: 35 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,657,924
Number of Sequences: 62578
Number of extensions: 509451
Number of successful extensions: 1962
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 457
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)