Query 008557
Match_columns 561
No_of_seqs 673 out of 4526
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 3.4E-37 1.2E-41 306.6 23.6 217 113-336 2-266 (282)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 8E-37 2.7E-41 300.5 20.5 216 112-336 2-231 (253)
3 1wdy_A 2-5A-dependent ribonucl 100.0 7.2E-36 2.5E-40 296.7 25.3 250 54-325 16-283 (285)
4 3b7b_A Euchromatic histone-lys 100.0 1.6E-35 5.5E-40 287.4 26.1 215 111-335 2-217 (237)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 3.7E-36 1.3E-40 295.8 21.2 242 67-319 3-247 (253)
6 2fo1_E LIN-12 protein; beta-ba 100.0 4.2E-36 1.4E-40 312.8 22.4 253 57-321 107-372 (373)
7 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-35 5.8E-40 314.2 26.1 219 108-336 167-385 (437)
8 2f8y_A Notch homolog 1, transl 100.0 3.3E-35 1.1E-39 282.4 25.1 207 108-323 12-219 (223)
9 1k1a_A B-cell lymphoma 3-encod 100.0 1.6E-35 5.5E-40 287.7 22.9 215 114-334 3-222 (241)
10 3utm_A Tankyrase-1; tankyrase, 100.0 4.2E-35 1.4E-39 300.5 27.2 241 74-336 24-321 (351)
11 2dzn_A Probable 26S proteasome 100.0 4.7E-35 1.6E-39 282.1 24.4 208 120-334 2-214 (228)
12 3aji_A 26S proteasome non-ATPa 100.0 1.1E-35 3.9E-40 287.3 19.5 209 118-335 4-212 (231)
13 1k1a_A B-cell lymphoma 3-encod 100.0 9.2E-36 3.1E-40 289.4 18.7 235 68-319 3-240 (241)
14 3d9h_A CDNA FLJ77766, highly s 100.0 3.8E-35 1.3E-39 294.0 23.6 249 73-335 14-262 (285)
15 3aji_A 26S proteasome non-ATPa 100.0 2.1E-34 7.1E-39 278.4 27.0 219 87-320 12-230 (231)
16 2xai_A ASB-9, ankyrin repeat a 100.0 5.1E-35 1.7E-39 289.1 23.0 205 119-335 2-206 (261)
17 3b7b_A Euchromatic histone-lys 100.0 8.9E-35 3E-39 282.1 23.1 228 66-315 3-230 (237)
18 3ljn_A Hypothetical protein; a 100.0 1.2E-35 4E-40 307.8 17.5 236 65-322 11-271 (364)
19 3d9h_A CDNA FLJ77766, highly s 100.0 3.8E-35 1.3E-39 294.0 20.3 230 66-322 51-281 (285)
20 1n11_A Ankyrin; clathrin, BAND 100.0 2.4E-34 8.3E-39 305.3 27.0 247 65-334 5-251 (437)
21 1wdy_A 2-5A-dependent ribonucl 100.0 4.2E-34 1.4E-38 284.0 26.5 238 76-336 7-261 (285)
22 2xai_A ASB-9, ankyrin repeat a 100.0 8.2E-35 2.8E-39 287.6 20.7 221 74-321 3-223 (261)
23 1ikn_D Protein (I-kappa-B-alph 100.0 4.5E-36 1.5E-40 291.6 11.2 203 114-322 2-211 (236)
24 2rfa_A Transient receptor pote 100.0 1.5E-34 5E-39 279.8 20.4 196 119-323 2-225 (232)
25 4g8k_A 2-5A-dependent ribonucl 100.0 7.9E-34 2.7E-38 290.9 25.7 265 52-323 34-329 (337)
26 3eu9_A Huntingtin-interacting 100.0 7.1E-34 2.4E-38 275.2 23.5 233 69-323 4-238 (240)
27 3hra_A Ankyrin repeat family p 100.0 7.3E-34 2.5E-38 268.5 22.7 194 117-318 2-201 (201)
28 4g8k_A 2-5A-dependent ribonucl 100.0 5.6E-34 1.9E-38 292.0 23.4 235 75-323 26-301 (337)
29 4b93_B Ankyrin repeat domain-c 100.0 1.2E-35 4E-40 295.3 9.4 236 71-321 8-245 (269)
30 4b93_B Ankyrin repeat domain-c 100.0 1.6E-34 5.3E-39 287.2 16.3 216 115-334 6-224 (269)
31 3ljn_A Hypothetical protein; a 100.0 2.2E-34 7.4E-39 298.3 17.1 216 109-336 9-252 (364)
32 3kea_A K1L; tropism, ANK repea 100.0 2.1E-34 7.1E-39 288.7 16.2 201 112-325 23-225 (285)
33 2dzn_A Probable 26S proteasome 100.0 6.7E-34 2.3E-38 274.1 19.1 224 74-316 2-226 (228)
34 1oy3_D Transcription factor in 100.0 3.7E-34 1.3E-38 284.7 17.7 218 68-306 3-269 (282)
35 1s70_B 130 kDa myosin-binding 100.0 7.2E-34 2.4E-38 285.6 19.2 211 116-335 36-272 (299)
36 3utm_A Tankyrase-1; tankyrase, 100.0 3.8E-33 1.3E-37 285.9 24.6 242 53-321 34-335 (351)
37 2fo1_E LIN-12 protein; beta-ba 100.0 5.5E-34 1.9E-38 296.8 18.2 223 111-336 115-354 (373)
38 2pnn_A Transient receptor pote 100.0 1.3E-34 4.4E-39 287.8 12.1 211 110-324 3-263 (273)
39 1s70_B 130 kDa myosin-binding 100.0 3E-33 1E-37 281.0 17.5 223 72-317 38-287 (299)
40 2etb_A Transient receptor pote 100.0 8.2E-34 2.8E-38 279.1 12.1 195 119-323 1-249 (256)
41 3eu9_A Huntingtin-interacting 100.0 5.3E-32 1.8E-36 262.0 22.2 215 113-336 2-218 (240)
42 4gpm_A Engineered protein OR26 100.0 3.5E-32 1.2E-36 250.8 18.9 158 161-322 6-163 (169)
43 3kea_A K1L; tropism, ANK repea 100.0 5E-33 1.7E-37 278.7 12.7 227 66-326 23-252 (285)
44 3jxi_A Vanilloid receptor-rela 100.0 4.5E-33 1.5E-37 274.3 9.7 199 117-323 2-253 (260)
45 4gpm_A Engineered protein OR26 100.0 3.1E-31 1.1E-35 244.4 18.4 159 122-290 6-164 (169)
46 2f8y_A Notch homolog 1, transl 100.0 2.9E-31 1E-35 254.8 18.5 197 131-336 2-199 (223)
47 4hbd_A KN motif and ankyrin re 100.0 1.9E-31 6.6E-36 265.9 16.4 193 120-318 76-273 (276)
48 1sw6_A Regulatory protein SWI6 100.0 4.7E-32 1.6E-36 277.0 6.9 193 122-332 99-320 (327)
49 2rfa_A Transient receptor pote 100.0 5.8E-30 2E-34 247.4 19.4 203 74-292 3-227 (232)
50 1ikn_D Protein (I-kappa-B-alph 100.0 1.9E-31 6.4E-36 258.9 8.6 219 70-305 4-229 (236)
51 1sw6_A Regulatory protein SWI6 100.0 1.3E-30 4.5E-35 266.3 13.6 182 108-306 118-327 (327)
52 2rfm_A Putative ankyrin repeat 100.0 8.5E-30 2.9E-34 239.2 16.5 165 150-318 26-190 (192)
53 3v30_A DNA-binding protein rfx 100.0 1.1E-29 3.8E-34 234.0 16.3 168 120-329 2-169 (172)
54 3hra_A Ankyrin repeat family p 100.0 3.1E-29 1E-33 236.7 19.7 191 74-285 5-201 (201)
55 3v30_A DNA-binding protein rfx 100.0 2.4E-29 8.3E-34 231.7 15.8 142 160-337 3-144 (172)
56 3v31_A Ankyrin repeat family A 100.0 4.1E-29 1.4E-33 229.0 16.4 160 159-322 3-162 (167)
57 2pnn_A Transient receptor pote 100.0 1.6E-29 5.4E-34 251.0 14.4 222 67-300 6-272 (273)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.1E-29 1.7E-33 226.9 15.5 157 159-320 5-162 (162)
59 2rfm_A Putative ankyrin repeat 100.0 8E-29 2.7E-33 232.6 17.0 162 113-283 28-189 (192)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.7E-28 5.7E-33 225.7 17.9 158 157-318 12-169 (169)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.9E-29 2.3E-33 226.0 14.4 160 118-287 3-162 (162)
62 2etb_A Transient receptor pote 100.0 3.6E-29 1.2E-33 245.9 12.1 203 74-288 2-247 (256)
63 3twr_A Tankyrase-2; ankyrin re 100.0 7.6E-29 2.6E-33 226.7 13.4 159 157-319 6-164 (165)
64 3f6q_A Integrin-linked protein 100.0 1.8E-28 6E-33 227.7 15.5 165 159-326 5-169 (179)
65 3v31_A Ankyrin repeat family A 100.0 2.2E-28 7.7E-33 224.1 15.2 159 119-287 2-160 (167)
66 4hbd_A KN motif and ankyrin re 100.0 6.5E-28 2.2E-32 240.3 19.3 166 113-286 104-275 (276)
67 3f6q_A Integrin-linked protein 100.0 3E-28 1E-32 226.1 15.4 169 118-295 3-171 (179)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.5E-28 2.6E-32 221.4 17.2 158 116-282 10-167 (169)
69 1awc_B Protein (GA binding pro 100.0 1.2E-27 4.1E-32 216.2 17.0 150 160-314 3-152 (153)
70 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.2E-27 4.2E-32 216.4 16.6 152 161-317 4-155 (156)
71 3twr_A Tankyrase-2; ankyrin re 100.0 4.3E-28 1.5E-32 221.7 12.9 161 116-286 4-164 (165)
72 1awc_B Protein (GA binding pro 99.9 3.8E-27 1.3E-31 212.8 17.5 151 120-280 2-152 (153)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.9E-27 1E-31 213.9 15.7 153 120-282 2-154 (156)
74 3jxi_A Vanilloid receptor-rela 99.9 8.2E-28 2.8E-32 236.6 12.3 203 74-288 5-251 (260)
75 2vge_A RELA-associated inhibit 99.9 3.8E-30 1.3E-34 249.3 -5.5 187 114-313 15-206 (229)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.1E-28 1E-32 237.3 5.0 180 117-307 2-193 (239)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.8E-27 1.6E-31 228.8 8.0 164 156-324 2-168 (239)
78 1d9s_A Cyclin-dependent kinase 99.9 2E-25 6.9E-30 197.4 12.2 130 188-320 6-136 (136)
79 1bi7_B P16INK4A, MTS1, multipl 99.9 2E-25 6.8E-30 202.4 10.7 146 152-302 5-151 (156)
80 2vge_A RELA-associated inhibit 99.9 5.9E-27 2E-31 226.8 0.4 187 136-332 1-192 (229)
81 3t8k_A Uncharacterized protein 99.9 6.2E-26 2.1E-30 212.3 6.8 156 160-320 7-179 (186)
82 2aja_A Ankyrin repeat family p 99.9 4.3E-27 1.5E-31 243.9 -3.3 157 117-288 89-251 (376)
83 3t8k_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 210.7 5.5 161 120-292 6-184 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 8.4E-25 2.9E-29 193.4 9.2 131 152-287 5-136 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-24 4.3E-29 197.0 9.7 145 114-268 6-151 (156)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.3E-23 7.9E-28 180.4 14.1 126 158-320 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.6E-23 5.6E-28 185.1 12.4 126 156-318 11-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.3E-23 2.8E-27 176.9 14.8 126 119-287 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 6.8E-23 2.3E-27 181.1 12.5 126 115-248 9-134 (136)
90 2aja_A Ankyrin repeat family p 99.9 6.1E-25 2.1E-29 227.8 -1.1 181 120-323 65-253 (376)
91 3ui2_A Signal recognition part 99.9 1E-24 3.6E-29 213.0 -0.6 142 157-320 43-185 (244)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.8E-23 6.2E-28 184.9 7.4 127 191-319 7-133 (137)
93 3deo_A Signal recognition part 99.9 1.1E-22 3.8E-27 189.3 9.8 138 158-317 43-181 (183)
94 3c5r_A BARD-1, BRCA1-associate 99.9 8.1E-23 2.8E-27 180.7 7.3 129 111-282 2-130 (137)
95 3ui2_A Signal recognition part 99.9 4.4E-22 1.5E-26 194.3 11.9 143 117-287 42-185 (244)
96 3deo_A Signal recognition part 99.9 2.5E-22 8.5E-27 187.0 9.5 139 117-282 41-180 (183)
97 3ehr_A Osteoclast-stimulating 99.9 1.9E-22 6.3E-27 193.7 7.2 138 152-326 66-204 (222)
98 3ehr_A Osteoclast-stimulating 99.9 4E-22 1.4E-26 191.3 8.3 112 223-335 69-180 (222)
99 1dcq_A PYK2-associated protein 99.9 1.7E-21 5.9E-26 194.0 13.0 194 116-321 62-264 (278)
100 3aaa_C Myotrophin, protein V-1 99.9 3.2E-21 1.1E-25 167.1 12.9 113 196-313 9-121 (123)
101 2b0o_E UPLC1; arfgap, structur 99.8 1E-21 3.6E-26 197.8 9.2 144 155-308 147-299 (301)
102 2b0o_E UPLC1; arfgap, structur 99.8 1.4E-21 4.7E-26 196.9 10.0 129 191-321 148-285 (301)
103 3aaa_C Myotrophin, protein V-1 99.8 2E-21 6.9E-26 168.4 9.0 111 157-270 5-115 (123)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-20 5E-25 154.6 11.2 93 226-320 1-93 (93)
105 3jue_A Arfgap with coiled-coil 99.8 6E-20 2.1E-24 189.6 11.9 125 194-320 199-326 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-19 4.8E-24 195.2 13.8 128 159-290 132-268 (497)
107 3lvq_E ARF-GAP with SH3 domain 99.8 1.6E-19 5.4E-24 194.8 14.1 129 194-324 132-269 (497)
108 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.8E-24 187.6 11.6 159 159-320 199-364 (368)
109 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-19 4E-24 155.1 8.7 109 222-332 4-112 (115)
110 1dcq_A PYK2-associated protein 99.8 8.3E-19 2.9E-23 174.5 14.2 125 161-287 132-263 (278)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.6E-19 9E-24 152.9 8.8 108 190-299 5-112 (115)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.7E-19 2.6E-23 144.1 10.8 90 196-287 4-93 (93)
113 2zgd_A 3 repeat synthetic anky 99.7 2E-17 6.9E-22 140.3 9.2 94 219-314 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 7.8E-16 2.7E-20 130.4 9.2 95 150-280 15-109 (110)
115 2l2t_A Receptor tyrosine-prote 68.0 9.5 0.00033 25.4 4.6 29 490-518 6-34 (44)
116 2ks1_B Epidermal growth factor 53.2 9.6 0.00033 25.4 2.6 28 491-518 8-35 (44)
117 3rko_J NADH-quinone oxidoreduc 52.0 51 0.0018 29.3 8.1 17 427-443 4-20 (184)
118 2knc_B Integrin beta-3; transm 49.7 35 0.0012 25.8 5.7 28 492-519 9-36 (79)
119 4ev6_A Magnesium transport pro 40.4 1.2E+02 0.004 29.7 9.6 24 462-485 277-300 (339)
120 2l8s_A Integrin alpha-1; trans 28.3 82 0.0028 21.8 4.2 23 491-513 7-29 (54)
121 4a01_A Proton pyrophosphatase; 27.8 1.5E+02 0.0052 32.1 8.2 58 460-517 357-425 (766)
122 3v2y_A Sphingosine 1-phosphate 27.7 4E+02 0.014 27.2 11.8 24 503-526 227-250 (520)
123 2knc_A Integrin alpha-IIB; tra 27.5 87 0.003 21.7 4.2 23 491-513 10-32 (54)
124 2jwa_A Receptor tyrosine-prote 24.2 1.6E+02 0.0054 19.5 5.0 12 491-502 9-20 (44)
125 2k1a_A Integrin alpha-IIB; sin 23.5 1.3E+02 0.0045 19.7 4.3 23 491-513 8-30 (42)
126 2iub_A CORA, divalent cation t 22.9 1.7E+02 0.0058 28.8 7.3 23 462-484 301-323 (363)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.4e-37 Score=306.61 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=189.9
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192 (561)
Q Consensus 113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~ 192 (561)
++..|..|+||||+||..|+.++|++|++.+... ..++.+|..|.||||+|+..|+.++|++|+++ +.+++..+.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~ 76 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAER 76 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCC
Confidence 4578999999999999999999999999985532 34789999999999999999999999999998 678889999
Q ss_pred CCCcHHHHHHHcCHHHHHHHHhcCCCC-----------------------------------------------ccccCC
Q 008557 193 NGYDSFHVAAKQGHLVVKALVSKDPST-----------------------------------------------GFRTDK 225 (561)
Q Consensus 193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~-----------------------------------------------~~~~d~ 225 (561)
.|.||||+|+..|+..+.++|...+.. .+..|.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 999999999999999998888876543 456788
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304 (561)
Q Consensus 226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~ 304 (561)
.|+||||+|+..|+.+++++|++.|+++ +.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~ 234 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALL 234 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHT
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHH
Confidence 9999999999999999999999999998 77775 59999999999999999999999 799999999999999999999
Q ss_pred cCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 305 LGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 305 ~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
.++.+++++|+++|++++..+..+.+|.....
T Consensus 235 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp SSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred cCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 99999999999999999999999888876543
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8e-37 Score=300.49 Aligned_cols=216 Identities=21% Similarity=0.242 Sum_probs=165.2
Q ss_pred CCCCCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHH
Q 008557 112 NKDSPGKRGDLQLHLAARAG-------------NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178 (561)
Q Consensus 112 ~~~~~~~~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L 178 (561)
++|.+|.+|+||||+|+..| +.++++.|++.+.. ..+..|..|.||||+|+..|+.++|++|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~L 76 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRL 76 (253)
T ss_dssp -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCC-----cccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 57889999999999999987 89999999988652 2455689999999999999999999999
Q ss_pred HhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCC-CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccc
Q 008557 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 257 (561)
Q Consensus 179 L~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~ 257 (561)
+++ +.+++..|..|.||||+|+..|+..+.++|...+. +.+..|..|.||||+|+..|+.+++++|++.++++ +.+
T Consensus 77 l~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 153 (253)
T 1yyh_A 77 LEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAV 153 (253)
T ss_dssp HHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCB
T ss_pred HHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCc
Confidence 998 67888899999999999999999988888777665 78888999999999999999999999999999887 899
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 258 d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus 154 d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231 (253)
T ss_dssp CTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence 9999999999999999999999999 79999999999999999999999999999999999999988888988886654
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-36 Score=296.75 Aligned_cols=250 Identities=20% Similarity=0.216 Sum_probs=214.7
Q ss_pred CCCccccccc--ccccccC-CCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHc
Q 008557 54 GPMEKQQSFH--GVTIDKQ-PSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARA 130 (561)
Q Consensus 54 g~~e~~~~~~--~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~ 130 (561)
|+.+.++.+. +..++.. +..+.++++.+...|+.+..+.+. +.+++++.+|..|.||||+|+..
T Consensus 16 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-------------RHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-------------HcCCCCcccCCCCCCHHHHHHHc
Confidence 4455555444 2334444 445568899999888876665443 45788999999999999999999
Q ss_pred CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC----------CCCCCcHHHH
Q 008557 131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP----------ARNGYDSFHV 200 (561)
Q Consensus 131 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~----------~~~g~tpLh~ 200 (561)
|+.++++.|++++. .++..|..|.||||+|+..|+.+++++|+++ +.+++.. +..|.||||+
T Consensus 83 ~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~ 154 (285)
T 1wdy_A 83 GSVKLLKLFLSKGA------DVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMD 154 (285)
T ss_dssp TCHHHHHHHHHTTC------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred CCHHHHHHHHHcCC------CCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHH
Confidence 99999999999854 4788899999999999999999999999998 4555555 7789999999
Q ss_pred HHHcCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHhCCC----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 201 AAKQGHLVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 201 Aa~~g~~~v~~lL~~~-~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
|+..|+..+.++|... +.+++..|..|+||||+|+..++ .+++++|++.+.++ +.+|..|+||||+|+..|+.+
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence 9999999888777765 88888999999999999999999 99999999999987 899999999999999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccC
Q 008557 276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 325 (561)
Q Consensus 276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~ 325 (561)
++++|++..|++++.+|..|+||||+|+..++.+++++|+++|++++..+
T Consensus 234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 99999987899999999999999999999999999999999999987643
No 4
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.6e-35 Score=287.37 Aligned_cols=215 Identities=23% Similarity=0.278 Sum_probs=201.1
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC
Q 008557 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP 190 (561)
Q Consensus 111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~ 190 (561)
.+++..|..|.||||+||..|+.+++++|++++. .++..|..|.||||+|+..|+.+++++|+++ +.+++..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~ 73 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA------NIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPK 73 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC------CcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCC
Confidence 4677889999999999999999999999999854 4788899999999999999999999999998 6778889
Q ss_pred CCCCCcHHHHHHHcCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557 191 ARNGYDSFHVAAKQGHLVVKALVSKDP-STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269 (561)
Q Consensus 191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~-~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa 269 (561)
+..|.||||+|+..|+..+.++|...+ ...+..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus 74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~ 152 (237)
T 3b7b_A 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAA 152 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHH
Confidence 999999999999999998888888776 788888999999999999999999999999999987 899999999999999
Q ss_pred HhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL 335 (561)
Q Consensus 270 ~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l 335 (561)
..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++..+..+.+|....
T Consensus 153 ~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 153 FSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp HHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred HCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 9999999999999 8999999999999999999999999999999999999999988898887653
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.7e-36 Score=295.76 Aligned_cols=242 Identities=17% Similarity=0.174 Sum_probs=182.3
Q ss_pred cccCCCCcccccccchhhhhHHHH--HHHHHHHHHHhhhcCCCccCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 008557 67 IDKQPSTRGVMEKQKSFRGFIEKQ--KSFRVVMERQLSFIGGGERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSC 143 (561)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~ 143 (561)
++.++..+.++++.+...|..... ..........+.+. .+.+.+++. .|..|.||||+|+..|+.++|+.|++.+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~L--l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF--IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHH--HHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 455667777888888877621000 00000011111111 144566644 5899999999999999999999999985
Q ss_pred CccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc
Q 008557 144 DANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT 223 (561)
Q Consensus 144 ~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~ 223 (561)
. .++..|..|.||||+|+..|+.+++++|+++ +..+.+..+.+|.||||+|+..|+..+.++|...+.+++.+
T Consensus 81 ~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 153 (253)
T 1yyh_A 81 A------DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153 (253)
T ss_dssp C------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB
T ss_pred C------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc
Confidence 4 4788999999999999999999999999998 34477888999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 303 (561)
Q Consensus 224 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~ 303 (561)
|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+
T Consensus 154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQ 231 (253)
T ss_dssp CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999 89999999999999999999
Q ss_pred HcCCHHHHHHHHHcCC
Q 008557 304 KLGNTELFSLLKEAGA 319 (561)
Q Consensus 304 ~~~~~~i~~~Ll~~ga 319 (561)
..|+.+++++|.....
T Consensus 232 ~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 232 ERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HTTCHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHhh
Confidence 9999999999987543
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-36 Score=312.77 Aligned_cols=253 Identities=17% Similarity=0.178 Sum_probs=216.9
Q ss_pred cccccccccccccCC-CCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHH
Q 008557 57 EKQQSFHGVTIDKQP-STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSR 135 (561)
Q Consensus 57 e~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~ 135 (561)
+.+..+....++..+ ..+.++++.+...|+.+..+.+.....+.+. +.|+++|..|..|.||||+|+..|+.++
T Consensus 107 ~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll-----~~ga~vn~~d~~g~TpL~~A~~~g~~~i 181 (373)
T 2fo1_E 107 AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI-----AAGADVNAMDCDENTPLMLAVLARRRRL 181 (373)
T ss_dssp CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-----HTCCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-----hcCCCCcCCCCCCCCHHHHHHHcChHHH
Confidence 444445555666666 5677999999999988777665533333332 5789999999999999999999999999
Q ss_pred HHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC-CCCCCcCCCCCCcHHHHHHHcC---HHHHHH
Q 008557 136 VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN-LETASIPARNGYDSFHVAAKQG---HLVVKA 211 (561)
Q Consensus 136 v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~-~~~~~~~~~~g~tpLh~Aa~~g---~~~v~~ 211 (561)
|++|++++. +++..|..|.||||+|+..|+.+++++|++++. ..+.+..|.+|.||||+|+..| +..+.+
T Consensus 182 v~~Ll~~ga------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~ 255 (373)
T 2fo1_E 182 VAYLMKAGA------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255 (373)
T ss_dssp HHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHCCC------CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence 999999854 478899999999999999999999999999721 1577888999999999999998 888888
Q ss_pred HHhcCCCCccc--------cCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557 212 LVSKDPSTGFR--------TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283 (561)
Q Consensus 212 lL~~~~~~~~~--------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~ 283 (561)
+|...+.+++. .|..|+||||+|+..|+.++|++|++.+...++.+|..|+||||+|+..|+.+++++|++
T Consensus 256 ~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~- 334 (373)
T 2fo1_E 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ- 334 (373)
T ss_dssp HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-
T ss_pred HHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence 88887777664 577999999999999999999999988744459999999999999999999999999999
Q ss_pred CCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321 (561)
Q Consensus 284 ~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~ 321 (561)
.|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 335 ~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 89999999999999999999999999999999999864
No 7
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-35 Score=314.18 Aligned_cols=219 Identities=29% Similarity=0.385 Sum_probs=173.5
Q ss_pred ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q 008557 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA 187 (561)
Q Consensus 108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~ 187 (561)
+.+++++..+..|.||||+|+..|+.+++++|++++. .++..+..|.||||+|+..|+.+++++|+++ +.+.
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~ 238 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG------SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--GGSA 238 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 3466677777777777777777777777777777643 2566677788888888888888888888877 5566
Q ss_pred CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHH
Q 008557 188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267 (561)
Q Consensus 188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~ 267 (561)
+..+..|.||||+|+..|+.++.++|...+.+.+..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 317 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV 317 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence 677778888888888888888888888777777777888888888888888888888888887776 7788888888888
Q ss_pred HHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 268 Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus 318 A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~ 385 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385 (437)
T ss_dssp HHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred HHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 888888888888888 78888888888888888888888888888888888888887777777776543
No 8
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.3e-35 Score=282.44 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=193.1
Q ss_pred ccCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 008557 108 ERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186 (561)
Q Consensus 108 ~~~~~~~~~-~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~ 186 (561)
+.+.+++.. |..|.||||+|+..|+.+++++|++.+. .++..|..|.||||+|+..|+.+++++|+++ +..+
T Consensus 12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~ 84 (223)
T 2f8y_A 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA------DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATD 84 (223)
T ss_dssp ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB-TTSC
T ss_pred HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 456777665 8899999999999999999999999854 4788999999999999999999999999998 3447
Q ss_pred CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 266 (561)
Q Consensus 187 ~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh 266 (561)
.+..+..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 163 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLF 163 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~ 323 (561)
+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+....
T Consensus 164 ~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 164 LAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp HHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred HHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 9999999999999999 8999999999999999999999999999999999997653
No 9
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.6e-35 Score=287.70 Aligned_cols=215 Identities=23% Similarity=0.267 Sum_probs=192.0
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (561)
Q Consensus 114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~ 193 (561)
+.+|.+|+||||+||..|+.++++.|++..... +..++..|..|.||||+|+..|+.+++++|+++ +.+++..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~ 78 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRH 78 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCC
Confidence 467999999999999999999999999731100 245888999999999999999999999999998 6778889999
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCC----CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHHH
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPS----TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIA 268 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~A 268 (561)
|.||||+|+..|+..+.++|...+. ..+..|..|+||||+|+..|+.+++++|++.++++ +..| ..|.||||+|
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA 157 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence 9999999999999988888777665 67778999999999999999999999999999988 7777 8899999999
Q ss_pred HHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ 334 (561)
Q Consensus 269 a~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~ 334 (561)
+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|...
T Consensus 158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~ 222 (241)
T 1k1a_A 158 VENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222 (241)
T ss_dssp HHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence 99999999999999 799999999999999999999999999999999999999888888887643
No 10
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.2e-35 Score=300.46 Aligned_cols=241 Identities=23% Similarity=0.233 Sum_probs=211.5
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 153 (561)
+.+.+..+...|..+..+ .++. +.+.+++..|..|.||||+||..|+.++|++|++++. .++
T Consensus 24 ~~~~L~~A~~~g~~~~v~-------~ll~-----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~ 85 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLM-------ALLT-----PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA------DVH 85 (351)
T ss_dssp HHHHHHHHHHHTCHHHHH-------HHCC-----TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTT
T ss_pred cchhHHHHHHcCCHHHHH-------HHHH-----hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCC
Confidence 335555555555543333 2222 4678899999999999999999999999999999854 488
Q ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc----------
Q 008557 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT---------- 223 (561)
Q Consensus 154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~---------- 223 (561)
..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+..+.++|.+.+.+++..
T Consensus 86 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~ 163 (351)
T 3utm_A 86 AKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163 (351)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence 8999999999999999999999999998 6788889999999999999999999999998887766543
Q ss_pred --------------------------------------------CCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccc
Q 008557 224 --------------------------------------------DKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKL 256 (561)
Q Consensus 224 --------------------------------------------d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~ 256 (561)
+..|.||||+|+.. ++.+++++|++.+.++ +.
T Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~ 242 (351)
T 3utm_A 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NE 242 (351)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TC
T ss_pred HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CC
Confidence 35678999999998 5689999999999987 99
Q ss_pred cccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 257 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus 243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 243 KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999876543
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.7e-35 Score=282.14 Aligned_cols=208 Identities=27% Similarity=0.325 Sum_probs=191.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc-CCCCCCcHH
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-PARNGYDSF 198 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~-~~~~g~tpL 198 (561)
|+||||+||..|+.++|+.|++.++ ...+..|..|.||||+|+..|+.+++++|++++...+... .+..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc-----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence 7899999999999999999999865 3356689999999999999999999999999954455555 889999999
Q ss_pred HHHHHcCHHHHHHHHhcCC--CCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHH
Q 008557 199 HVAAKQGHLVVKALVSKDP--STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276 (561)
Q Consensus 199 h~Aa~~g~~~v~~lL~~~~--~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~i 276 (561)
|+|+..|+..+.++|...+ .+.+..|..|.||||+|+..|+.+++++|++.|.++ +.+|..|+||||+|+..|+.++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence 9999999999999998887 778888999999999999999999999999999887 9999999999999999999999
Q ss_pred HHHHhhcCC-CCcccccCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccccCCCCCCHHHH
Q 008557 277 VRCLLSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLK-EAGAAHSKDHGKPPSATKQ 334 (561)
Q Consensus 277 v~~LL~~~g-ad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~ 334 (561)
+++|++ .| +++|.+|..|+||||+|+..|+.+++++|+ ++|++++..+..+.+|...
T Consensus 156 v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~ 214 (228)
T 2dzn_A 156 IELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214 (228)
T ss_dssp HHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGG
T ss_pred HHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHH
Confidence 999999 67 999999999999999999999999999999 9999999988888887654
No 12
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-35 Score=287.29 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=162.0
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197 (561)
Q Consensus 118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp 197 (561)
..++||||.|+..|+.+.++.|++..+ ..++..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSP 76 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhch-----hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCH
Confidence 456778888888888888888877653 33667777788888888888888888888877 55667777778888
Q ss_pred HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557 198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277 (561)
Q Consensus 198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv 277 (561)
||+|+..|+..+.++|...+.+++.+|..|+||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMV 155 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHH
Confidence 88888888877777777777777777777888888888888888888888877776 77777788888888888888888
Q ss_pred HHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL 335 (561)
Q Consensus 278 ~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l 335 (561)
++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++..+..+.+|....
T Consensus 156 ~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 212 (231)
T 3aji_A 156 HILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212 (231)
T ss_dssp HHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred HHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 88887 6788888888888888888888888888888888888777777777776554
No 13
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.2e-36 Score=289.44 Aligned_cols=235 Identities=19% Similarity=0.178 Sum_probs=204.6
Q ss_pred ccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc
Q 008557 68 DKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANE 147 (561)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~ 147 (561)
+.++..+.++++.+...|..+..+.+.... .+.+.+++..|..|.||||+|+..|+.+++++|++.+.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--- 70 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLF---------QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA--- 70 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHH---------HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHH---------HhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence 346677889999999999887776554321 14578899999999999999999999999999999854
Q ss_pred hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC--CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-
Q 008557 148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL--ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD- 224 (561)
Q Consensus 148 ~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~--~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d- 224 (561)
.++..|..|.||||+|+..|+.+++++|++++.. .+.+..+..|.||||+|+..|+..+.++|...+.+++..|
T Consensus 71 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 147 (241)
T 1k1a_A 71 ---SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 147 (241)
T ss_dssp ---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred ---CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence 4788899999999999999999999999998431 2677788999999999999999999999999998888888
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304 (561)
Q Consensus 225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~ 304 (561)
..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 148 KSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARS 225 (241)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSS
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHh
Confidence 88999999999999999999999999987 9999999999999999999999999999 899999999999999999999
Q ss_pred cCCHHHHHHHHHcCC
Q 008557 305 LGNTELFSLLKEAGA 319 (561)
Q Consensus 305 ~~~~~i~~~Ll~~ga 319 (561)
.|+.++++.|.+.++
T Consensus 226 ~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 226 RRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHTC------
T ss_pred cCcHHHHhhhccCCC
Confidence 999999999988765
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=294.04 Aligned_cols=249 Identities=18% Similarity=0.142 Sum_probs=198.0
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhh
Q 008557 73 TRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLL 152 (561)
Q Consensus 73 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~ 152 (561)
.+.+.++.+...|.......+.....+. +....--....+..|..|+||||+||..|+.++|+.|++.+. .+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------~~ 85 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRD--FPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW------AV 85 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC------CS
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCcccc--ccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC------CC
Confidence 3447788888888643333221111110 000001123356789999999999999999999999999853 47
Q ss_pred ccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH 232 (561)
Q Consensus 153 ~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh 232 (561)
+.+|..|.||||+|+..|+.++|++|+++ +.+++..|.+|.||||+|+..|+..+.++|...+.+.+. +..|.||||
T Consensus 86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~ 162 (285)
T 3d9h_A 86 NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIH 162 (285)
T ss_dssp CEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTSCHHH
T ss_pred CCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC-CCCCCCHHH
Confidence 88999999999999999999999999998 678889999999999999999999999999998888765 456999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557 233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312 (561)
Q Consensus 233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~ 312 (561)
+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++. |..|.||||+|+..++.++++
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999987 9999999999999999999999999999 7999995 899999999999999999999
Q ss_pred HHHHcCCcccccCCCCCCHHHHH
Q 008557 313 LLKEAGAAHSKDHGKPPSATKQL 335 (561)
Q Consensus 313 ~Ll~~ga~~~~~~~~~~~~~~~l 335 (561)
+|+++|++++..+..+.+|....
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELV 262 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGS
T ss_pred HHHHCCCCCCCcCCCCCCHHHHh
Confidence 99999999999988888887544
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-34 Score=278.40 Aligned_cols=219 Identities=24% Similarity=0.261 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHH
Q 008557 87 IEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166 (561)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~A 166 (561)
.+....-....+.++. ..+...+.+|..|.||||+|+..|+.+++++|++.+. .++..|..|.||||+|
T Consensus 12 ~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 12 NLAYSGKLDELKERIL-----ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV------PVNDKDDAGWSPLHIA 80 (231)
T ss_dssp HHHHHTCHHHHHHHHH-----HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHH
T ss_pred HHHHhCCHHHHHHHHH-----hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC------CCCCcCCCCCCHHHHH
Confidence 3333333444444444 3456788899999999999999999999999999854 4788999999999999
Q ss_pred HHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHH
Q 008557 167 AESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246 (561)
Q Consensus 167 a~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L 246 (561)
+..|+.+++++|+++ +.+++..+..|.||||+|+..|+..+.++|.+.+.+++..|..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 81 ASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 999999999999998 678888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 247 l~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~ 320 (561)
++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|...++.+++++|.++|++
T Consensus 159 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 159 LFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 9999987 9999999999999999999999999999 7999999999999999999999999999999999875
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=289.07 Aligned_cols=205 Identities=20% Similarity=0.198 Sum_probs=184.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (561)
Q Consensus 119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL 198 (561)
+|+||||+||..|+.++++.|++.+. .++..|..|.||||+|+..|+.++|++|+++ +.+++..|.+|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW------AVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHH
Confidence 58999999999999999999998843 4788999999999999999999999999998 678888999999999
Q ss_pred HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557 199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278 (561)
Q Consensus 199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~ 278 (561)
|+|+..|+.++.++|.+.+.+.+. +.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.++++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~ 151 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVK 151 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHH
Confidence 999999999999998888887764 566999999999999999999999999887 889999999999999999999999
Q ss_pred HHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL 335 (561)
Q Consensus 279 ~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l 335 (561)
+|++ .|+++|. |..|.||||+|+..++.+++++|+++|++++..+..+.+|....
T Consensus 152 ~Ll~-~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 206 (261)
T 2xai_A 152 KLLE-SGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV 206 (261)
T ss_dssp HHHH-HTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred HHHH-cCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhc
Confidence 9999 7999995 88999999999999999999999999999998888888876543
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.9e-35 Score=282.13 Aligned_cols=228 Identities=22% Similarity=0.232 Sum_probs=206.5
Q ss_pred ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557 66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA 145 (561)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~ 145 (561)
+.+.++..+.++++.+...|..+..+.+. +.+.+++..+..|.||||+|+..|+.+++++|++.+.
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~- 68 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLV-------------QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA- 68 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHH-------------HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-
Confidence 34566777889999999999877665443 4578899999999999999999999999999998854
Q ss_pred cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557 146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK 225 (561)
Q Consensus 146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~ 225 (561)
.++..|..|.||||+|+..|+.+++++|++. +..+.+..+..|.||||+|+..|+..+.++|.+.+.+++.+|.
T Consensus 69 -----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 142 (237)
T 3b7b_A 69 -----LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN 142 (237)
T ss_dssp -----CCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT-TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred -----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC
Confidence 4788899999999999999999999999998 3467788899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305 (561)
Q Consensus 226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~ 305 (561)
.|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+..
T Consensus 143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 143 EENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLN 220 (237)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHH
Confidence 9999999999999999999999999987 8999999999999999999999999999 8999999999999999999999
Q ss_pred CCHHHHHHHH
Q 008557 306 GNTELFSLLK 315 (561)
Q Consensus 306 ~~~~i~~~Ll 315 (561)
++.+.+..|+
T Consensus 221 ~~~~~~~~l~ 230 (237)
T 3b7b_A 221 SQVWSALQMS 230 (237)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9886554443
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-35 Score=307.84 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=206.1
Q ss_pred cccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557 65 VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCD 144 (561)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~ 144 (561)
......+..+.++++.+...|+.+..+.+. +.+++++..|..|.||||+||..|+.++|++|++.+.
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLI-------------ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHH-------------HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 344556667779999999999877666543 4578999999999999999999999999999999865
Q ss_pred ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC--CCCCCc-----------------CCCCCCcHHHHHHHcC
Q 008557 145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN--LETASI-----------------PARNGYDSFHVAAKQG 205 (561)
Q Consensus 145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~--~~~~~~-----------------~~~~g~tpLh~Aa~~g 205 (561)
+..+.+|.||||+|+..|+.++|++|++++. +.+++. .+.+|.||||+|+..|
T Consensus 78 --------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 149 (364)
T 3ljn_A 78 --------VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG 149 (364)
T ss_dssp --------CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSC
T ss_pred --------CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcC
Confidence 2334589999999999999999999999721 122222 7788999999999999
Q ss_pred --HHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCc----ccccccCCchHHHHHHHhCCHHHHHH
Q 008557 206 --HLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGNTALHIAIKKGRTQIVRC 279 (561)
Q Consensus 206 --~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~n~~d~~G~TpLh~Aa~~g~~~iv~~ 279 (561)
+.++.++|...+++++..|..|+||||+|+..|+.+++++|++.+++. ++.+|..|+||||+|+..|+.+++++
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 229 (364)
T 3ljn_A 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229 (364)
T ss_dssp GGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH
T ss_pred CchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999989999999999999999999999999999999998872 38999999999999999999999999
Q ss_pred HhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557 280 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 322 (561)
Q Consensus 280 LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~ 322 (561)
|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 230 Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 271 (364)
T 3ljn_A 230 FVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271 (364)
T ss_dssp HHT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred HHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence 999 899999999999999999999999999999999998863
No 19
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=294.01 Aligned_cols=230 Identities=19% Similarity=0.204 Sum_probs=202.9
Q ss_pred ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557 66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA 145 (561)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~ 145 (561)
....++..+.++++.+...|..+..+.+. +.+.+++.+|..|.||||+|+..|+.++|++|++.+
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-- 115 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLI-------------SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-- 115 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHH-------------HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHH-------------HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--
Confidence 34567777889999999999876665443 457889999999999999999999999999999984
Q ss_pred cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557 146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK 225 (561)
Q Consensus 146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~ 225 (561)
..++..|..|.||||+|+..|+.+++++|+++ +.+.+. +.+|.||||+|+..|+..+.++|...+.+++..|.
T Consensus 116 ----a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~ 188 (285)
T 3d9h_A 116 ----AQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188 (285)
T ss_dssp ----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT
T ss_pred ----CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 34788999999999999999999999999998 444443 44599999999999999999999999999999999
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305 (561)
Q Consensus 226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~ 305 (561)
.|+||||+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+
T Consensus 189 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~-- 263 (285)
T 3d9h_A 189 HLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP-- 263 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC--
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc--
Confidence 9999999999999999999999999987 6 48999999999999999999999999 89999999999999999999
Q ss_pred CCHHHHHHHHHc-CCccc
Q 008557 306 GNTELFSLLKEA-GAAHS 322 (561)
Q Consensus 306 ~~~~i~~~Ll~~-ga~~~ 322 (561)
++.+++++|+++ |++..
T Consensus 264 ~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 264 PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TTSHHHHHHHHHC-----
T ss_pred CccHHHHHHHHhhccCCC
Confidence 567999999998 77654
No 20
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-34 Score=305.26 Aligned_cols=247 Identities=24% Similarity=0.311 Sum_probs=183.9
Q ss_pred cccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557 65 VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCD 144 (561)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~ 144 (561)
+.++..+..+.++++.+...|+.+..+.+. +.+++++..+..|.||||+||..|+.++|++|++++.
T Consensus 5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~ 71 (437)
T 1n11_A 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLL-------------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71 (437)
T ss_dssp ----------CCHHHHHHHHTCHHHHHHHH-------------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHH-------------HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 344555666678888888888766665443 3467777778888888888888888888888887743
Q ss_pred ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC
Q 008557 145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD 224 (561)
Q Consensus 145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d 224 (561)
.++.+|..|.||||+|+..|+.++|++|+++ +.+++..+..|.||||+|+..|+..+.+.|...+......+
T Consensus 72 ------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 143 (437)
T 1n11_A 72 ------KVNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143 (437)
T ss_dssp ------CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred ------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence 3677778888888888888888888888887 56677777788888888888888877777777777777777
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304 (561)
Q Consensus 225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~ 304 (561)
..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+.
T Consensus 144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~ 221 (437)
T 1n11_A 144 KKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAK 221 (437)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHH
Confidence 77888888888888888888888887776 7777788888888888888888888887 677788888888888888888
Q ss_pred cCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557 305 LGNTELFSLLKEAGAAHSKDHGKPPSATKQ 334 (561)
Q Consensus 305 ~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~ 334 (561)
.++.+++++|+++|++++..+..+.+|...
T Consensus 222 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 251 (437)
T 1n11_A 222 QNQVEVARSLLQYGGSANAESVQGVTPLHL 251 (437)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 888888888888888777766666666544
No 21
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-34 Score=284.03 Aligned_cols=238 Identities=21% Similarity=0.184 Sum_probs=211.9
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhcc
Q 008557 76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK 154 (561)
Q Consensus 76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~ 154 (561)
+++..+...|..+..+.+. +.+.+++.. +..|.||||+|+..|+.+++++|++.+. .++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~ 67 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------DPVL 67 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTC
T ss_pred hHHHHHHHcCCHHHHHHHH-------------HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCcc
Confidence 5556666666655444332 456778877 7889999999999999999999999854 4788
Q ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc----------C
Q 008557 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT----------D 224 (561)
Q Consensus 155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~----------d 224 (561)
.|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+..+.++|...+..++.. +
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 145 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhc
Confidence 899999999999999999999999998 6788889999999999999999999999999988887766 7
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHhcC-CCCcccccccCCchHHHHHHHhCC----HHHHHHHhhcCCCCcccccCCCCCHH
Q 008557 225 KKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGR----TQIVRCLLSIEGIDVNSLNKAGESPL 299 (561)
Q Consensus 225 ~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~Aa~~g~----~~iv~~LL~~~gad~n~~d~~G~TpL 299 (561)
..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+|+..++ .+++++|++ .|+++|.+|..|.|||
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPL 223 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHH
Confidence 8899999999999999999999998 6665 9999999999999999999 999999999 8999999999999999
Q ss_pred HHHHHcCCHHHHHHHHH-cCCcccccCCCCCCHHHHHH
Q 008557 300 DVAEKLGNTELFSLLKE-AGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 300 ~~A~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~l~ 336 (561)
|+|+..|+.+++++|++ .|++++..+..+.+|.....
T Consensus 224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261 (285)
T ss_dssp HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence 99999999999999999 89999998888988876543
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=287.57 Aligned_cols=221 Identities=19% Similarity=0.196 Sum_probs=196.8
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 153 (561)
+.++++.+...|..+..+.+. +.+.+++.+|..|.||||+|+..|+.++++.|++++ .+++
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~ 63 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLI-------------SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG------AQVN 63 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHH-------------HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT------CCTT
T ss_pred CCCHHHHHHHcCCHHHHHHHH-------------HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCC
Confidence 457788888888776655443 457889999999999999999999999999999985 3488
Q ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 008557 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHM 233 (561)
Q Consensus 154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~ 233 (561)
..|..|.||||+|+..|+.+++++|+++ +.+.+ .+.+|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+
T Consensus 64 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 140 (261)
T 2xai_A 64 GVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140 (261)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 9999999999999999999999999998 44444 35569999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHH
Q 008557 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313 (561)
Q Consensus 234 A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~ 313 (561)
|+..|+.+++++|++.|+++ +. |..|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+..+ +++++
T Consensus 141 A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~--~~~~~ 215 (261)
T 2xai_A 141 ACENQQRACVKKLLESGADV-NQ-GKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES--PLAQL 215 (261)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TC-CBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC--THHHH
T ss_pred HHHhCCHHHHHHHHHcCCCC-CC-CCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc--cHHHH
Confidence 99999999999999999987 64 8899999999999999999999999 79999999999999999999654 58999
Q ss_pred HHHcCCcc
Q 008557 314 LKEAGAAH 321 (561)
Q Consensus 314 Ll~~ga~~ 321 (561)
|+++++.+
T Consensus 216 ll~~~~~~ 223 (261)
T 2xai_A 216 FLEREGPP 223 (261)
T ss_dssp HHHC-CCC
T ss_pred HHhccCCc
Confidence 99987654
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.5e-36 Score=291.60 Aligned_cols=203 Identities=26% Similarity=0.308 Sum_probs=181.1
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (561)
Q Consensus 114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~ 193 (561)
+..|.+|+||||+|+..|+.++++.|++.+... +.+++..|..|.||||+|+..|+.++|++|+++ +.+++..|..
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~ 77 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFR 77 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTT
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCC
Confidence 357899999999999999999999999886532 235889999999999999999999999999998 6788889999
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc-CCchHHH
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPST------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALH 266 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~~------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh 266 (561)
|.||||+|+..|+..+.++|...+.. .+..|..|.||||+|+..|+.+++++|++.|+++ +.+|. .|+||||
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH 156 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence 99999999999999888888887654 4667889999999999999999999999999998 88887 9999999
Q ss_pred HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 322 (561)
Q Consensus 267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~ 322 (561)
+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++..
T Consensus 157 ~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9999999999999999 799999999999999999999999999999999999875
No 24
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=279.85 Aligned_cols=196 Identities=21% Similarity=0.216 Sum_probs=178.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC-----CcCCCC
Q 008557 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA-----SIPARN 193 (561)
Q Consensus 119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~-----~~~~~~ 193 (561)
.|+||||+|++.|+.++++.|++..+ .+++.+|..|.||||+|+..|+.++|++|++++ .+. ...|.+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~~ 74 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEG-----CEVHQRGAMGETALHIAALYDNLEAAMVLMEAA--PELVFEPMTSELYE 74 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTC-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC--GGGGGCCCCSTTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--chhccccccccCCC
Confidence 58999999999999999999998743 348889999999999999999999999999983 333 567789
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCCCccccCC-------------CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccC
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK-------------KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 260 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~ 260 (561)
|.||||+|+..|+..+.++|.+.+.+++..+. .|+||||+|+..|+.+++++|++.|+++ +.+|..
T Consensus 75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~ 153 (232)
T 2rfa_A 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSL 153 (232)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCC
Confidence 99999999999999999999998888877665 7999999999999999999999999987 999999
Q ss_pred CchHHHHHHHhCCHHHH----HHHhhcCCCCc------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557 261 GNTALHIAIKKGRTQIV----RCLLSIEGIDV------NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 261 G~TpLh~Aa~~g~~~iv----~~LL~~~gad~------n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~ 323 (561)
|+||||+|+..|+.+++ ++|++ .|+++ +.+|..|+||||+|+..|+.+++++|+++|+....
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchh
Confidence 99999999999999988 99999 78887 68999999999999999999999999999987654
No 25
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.9e-34 Score=290.90 Aligned_cols=265 Identities=15% Similarity=0.098 Sum_probs=208.6
Q ss_pred CCCCCccccccc--ccccccCCCC-cccccccchhhhhHHHHHHHHHHHHH--------------------HhhhcCCCc
Q 008557 52 ALGPMEKQQSFH--GVTIDKQPST-RGVMEKQKSFRGFIEKQKSFRVVMER--------------------QLSFIGGGE 108 (561)
Q Consensus 52 ~~g~~e~~~~~~--~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~l~~~~~~~ 108 (561)
..|+.+.++.+. +++++.++.. +.|+++.+...|+.+..+.+...... .........
T Consensus 34 ~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 34 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence 356777777665 4566655544 55888888888887776655421000 000000114
Q ss_pred cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 008557 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANE----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL 184 (561)
Q Consensus 109 ~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~ 184 (561)
.+.+++..|..|.||||+|+..|+.++++.|++++.... ........+..|.||||+|+..|+.++|++||++ .+
T Consensus 114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~-~g 192 (337)
T 4g8k_A 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-MG 192 (337)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH-SC
T ss_pred ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc-cC
Confidence 567888999999999999999999999999999876421 1233455677899999999999999999999976 36
Q ss_pred CCCCcCCCCCCcHHHHHHHcCH----HHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccC
Q 008557 185 ETASIPARNGYDSFHVAAKQGH----LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 260 (561)
Q Consensus 185 ~~~~~~~~~g~tpLh~Aa~~g~----~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~ 260 (561)
.+++..|..|.||||.++..++ ..+.++|.+.+++++.+|..|+||||+|+..|+.++++.|++.+...++.+|.+
T Consensus 193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~ 272 (337)
T 4g8k_A 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 272 (337)
T ss_dssp CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence 7888999999999998876543 467888889999999999999999999999999999999998754445999999
Q ss_pred CchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 261 G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~ 323 (561)
|+||||+|+..|+.++|++||+ .|+|+|.+ ||||+|+..|+.+++++|+++||+++.
T Consensus 273 G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 273 GKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 9999999999999999999999 89988754 599999999999999999999999864
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=275.22 Aligned_cols=233 Identities=26% Similarity=0.264 Sum_probs=202.7
Q ss_pred cCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccch
Q 008557 69 KQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEA 148 (561)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~ 148 (561)
..+..+.+++..+...|..+..+.+. +.+.+++.++..|.||||+|+..|+.+++++|++.+...
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-- 68 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELV-------------EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-- 68 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred ccccccchHHHHHHHcCChHHHHHHH-------------HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--
Confidence 34556678888888888876666543 457889999999999999999999999999999986532
Q ss_pred hHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCC
Q 008557 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQ 228 (561)
Q Consensus 149 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~ 228 (561)
....+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+..+.++|.+.+.+++..|..|.
T Consensus 69 ---~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~ 143 (240)
T 3eu9_A 69 ---DQLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM 143 (240)
T ss_dssp ---TCCBTTTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ---hhhcCCcCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCC
Confidence 334456699999999999999999999998 677888899999999999999999999999999999999999999
Q ss_pred cHHHHHHhCCC-HHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557 229 TALHMAVKGQN-EDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306 (561)
Q Consensus 229 tpLh~A~~~g~-~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~ 306 (561)
||||+|+..++ .+++++|++.+.++ +..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..+
T Consensus 144 t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~ 221 (240)
T 3eu9_A 144 TPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRK 221 (240)
T ss_dssp CHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTT
T ss_pred cHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence 99999996555 89999999999987 77776 99999999999999999999999 79999999999999999999999
Q ss_pred CHHHHHHHHHcCCcccc
Q 008557 307 NTELFSLLKEAGAAHSK 323 (561)
Q Consensus 307 ~~~i~~~Ll~~ga~~~~ 323 (561)
+.+++++|+++|++...
T Consensus 222 ~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 222 NVWMINHLQEARQAKGY 238 (240)
T ss_dssp CHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHhhhccCc
Confidence 99999999999987643
No 27
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7.3e-34 Score=268.47 Aligned_cols=194 Identities=22% Similarity=0.263 Sum_probs=180.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCc
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~t 196 (561)
+..+.||||.|+..|+.+.++.|+..++. +++..|..|.||||+|+..|+.++|++|+++ +.+++..+..|.|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 74 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTY-----QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDS 74 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence 35688999999999999999999988652 4889999999999999999999999999998 7788889999999
Q ss_pred HHHHHHHcCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC--
Q 008557 197 SFHVAAKQGHLVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-- 273 (561)
Q Consensus 197 pLh~Aa~~g~~~v~~lL~-~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~-- 273 (561)
|||+|+..|+..+.++|. ..+.+.+..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 154 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence 999999999998877777 78888889999999999999999999999999999954459999999999999999998
Q ss_pred ---HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557 274 ---TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318 (561)
Q Consensus 274 ---~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g 318 (561)
.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 155 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 QLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999 89999999999999999999999999999999987
No 28
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.6e-34 Score=292.05 Aligned_cols=235 Identities=20% Similarity=0.192 Sum_probs=199.1
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCccc------
Q 008557 75 GVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANE------ 147 (561)
Q Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~------ 147 (561)
.+++..|...|..+..+.+. +.|+++|.++. .|+||||+||..|+.++|++||++++...
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL-------------~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~ 92 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 92 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-------------HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred ChHHHHHHHcCCHHHHHHHH-------------HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC
Confidence 36677777777766665443 56899998876 49999999999999999999999876321
Q ss_pred ---------------------hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC--------CCcCCCCCCcHH
Q 008557 148 ---------------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET--------ASIPARNGYDSF 198 (561)
Q Consensus 148 ---------------------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~--------~~~~~~~g~tpL 198 (561)
.+..++..|..|.||||+|+..|+.+++++|++++...+ ....+..|.|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 123567889999999999999999999999999843221 123456799999
Q ss_pred HHHHHcCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHhCCC----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557 199 HVAAKQGHLVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 273 (561)
Q Consensus 199 h~Aa~~g~~~v~~lL~-~~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~ 273 (561)
|+|+..|+.+++++|. +.+++++..|..|+||||.++..++ .+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhh
Confidence 9999999998877776 5789999999999999998875433 46889999999997 9999999999999999999
Q ss_pred HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557 274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 274 ~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~ 323 (561)
.++++.|+...|+++|.+|.+|+||||+|+..|+.+++++|+++||+++.
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 99999999877999999999999999999999999999999999999864
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=295.30 Aligned_cols=236 Identities=24% Similarity=0.278 Sum_probs=167.4
Q ss_pred CCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHH-HHHHHHhcCCccchh
Q 008557 71 PSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLS-RVMEILQSCDANEAK 149 (561)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~ 149 (561)
|..+.+++..|...|+.+..+.+........ ......++..+..|.||||.|+..++.+ +++.|++.+
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~-----~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G------ 76 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDL-----EDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG------ 76 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CC------
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCccc-----ccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC------
Confidence 3334467788888888776665432111100 1122346677889999999999988764 788888874
Q ss_pred HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT 229 (561)
Q Consensus 150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t 229 (561)
+++|.+|.+|+||||+||..|+.++|++|++. ++++...+.+|.||+|+|+..++..+.++|...+.+++.+|..|+|
T Consensus 77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~T 154 (269)
T 4b93_B 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT 154 (269)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCC
Confidence 44899999999999999999999999999998 6788889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC-H
Q 008557 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-T 308 (561)
Q Consensus 230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~-~ 308 (561)
|||+|+..|+.++|++|++.|+++ |.+|..|+||||+|+..|+.++|++|++ .|+|+|.+|.+|+||||+|+++++ .
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~ 232 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIM 232 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHH
Confidence 999999999999999999999997 9999999999999999999999999999 899999999999999999987765 2
Q ss_pred HHHHHHHHcCCcc
Q 008557 309 ELFSLLKEAGAAH 321 (561)
Q Consensus 309 ~i~~~Ll~~ga~~ 321 (561)
++++.|...++..
T Consensus 233 ~lL~~l~~~~~~~ 245 (269)
T 4b93_B 233 ELLQVVPSCVASL 245 (269)
T ss_dssp HHTTC--------
T ss_pred HHHHHHHHhchhh
Confidence 4444444444443
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=287.17 Aligned_cols=216 Identities=22% Similarity=0.237 Sum_probs=169.5
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc--hhHhhccCCCCCCcHHHHHHHhCcHH-HHHHHHhcCCCCCCCcCC
Q 008557 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANE--AKDLLSKKNQEGETPLYVAAESGHAL-IVEEMLQHMNLETASIPA 191 (561)
Q Consensus 115 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~g~TpLh~Aa~~g~~~-iv~~LL~~~~~~~~~~~~ 191 (561)
.+|..+.+|||.||+.|+.++|++||+.+..+. ....++..|..|.||||.|+..++.+ ++++|++. +.+++..|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d 83 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS 83 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence 356778899999999999999999999865421 12346778899999999999988764 78999987 77889999
Q ss_pred CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHh
Q 008557 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271 (561)
Q Consensus 192 ~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~ 271 (561)
.+|+||||+|+..|+..+.++|...+++++..+..|.||+|+|+..++.+++++|++.++++ +.+|..|+||||+|+..
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999997 99999999999999999
Q ss_pred CCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ 334 (561)
Q Consensus 272 g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~ 334 (561)
|+.+++++|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.||...
T Consensus 163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~ 224 (269)
T 4b93_B 163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDC 224 (269)
T ss_dssp TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGG
T ss_pred CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 99999999999 899999999999999999999999999999999999999998888888654
No 31
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-34 Score=298.31 Aligned_cols=216 Identities=19% Similarity=0.153 Sum_probs=192.2
Q ss_pred cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q 008557 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS 188 (561)
Q Consensus 109 ~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~ 188 (561)
.+.+++..|..|.||||+||..|+.++|++|++.+. +++..|..|.||||+||..|+.++|++|++++ . .
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~--~ 78 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV------SPTIQNRFGCTALHLACKFGCVDTAKYLASVG--E--V 78 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC--C--C
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCcHHHHHHHcCCHHHHHHHHHCC--C--C
Confidence 356677889999999999999999999999999853 47899999999999999999999999999993 3 3
Q ss_pred cCCCCCCcHHHHHHHcCHHHHHHHHhcC----CCCccc-----------------cCCCCCcHHHHHHhCC--CHHHHHH
Q 008557 189 IPARNGYDSFHVAAKQGHLVVKALVSKD----PSTGFR-----------------TDKKGQTALHMAVKGQ--NEDIVLE 245 (561)
Q Consensus 189 ~~~~~g~tpLh~Aa~~g~~~v~~lL~~~----~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~ 245 (561)
..+.+|.||||+|+..|+..+.++|... +..++. .|..|.||||+|+..| +.+++++
T Consensus 79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence 4456899999999999999998888887 666655 7889999999999999 9999999
Q ss_pred HhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC-----cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557 246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-----VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 246 Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-----~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~ 320 (561)
|++.|+++ +..|..|+||||+|+..|+.+++++|++ .|++ +|..|..|.||||+|+..|+.+++++|+++|++
T Consensus 159 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 236 (364)
T 3ljn_A 159 LVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236 (364)
T ss_dssp HHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred HHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999987 9999999999999999999999999999 7888 999999999999999999999999999999999
Q ss_pred ccccCCCCCCHHHHHH
Q 008557 321 HSKDHGKPPSATKQLK 336 (561)
Q Consensus 321 ~~~~~~~~~~~~~~l~ 336 (561)
++..+..+.+|.....
T Consensus 237 ~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 237 VNMEDNEHTVPLYLSV 252 (364)
T ss_dssp TTCCCTTSCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHH
Confidence 9999888988876543
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.1e-34 Score=288.71 Aligned_cols=201 Identities=22% Similarity=0.166 Sum_probs=185.6
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC
Q 008557 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA 191 (561)
Q Consensus 112 ~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~ 191 (561)
+++.+|..|.||||+|+..|+.++|+.|++.+ ..++.. +|.||||+|+..|+.++|++|+++ +.+++..|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d 92 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLL--ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFD 92 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence 57899999999999999999999999999984 335655 499999999999999999999998 67888899
Q ss_pred CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCC-CcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG-QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 192 ~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
..|.||||+|+..|+..+.++|...+++++..|..| .||||+|+..|+.+++++|++.+++..+. ..|+||||+|+.
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~ 170 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIK 170 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHH
Confidence 999999999999999999999999999999999999 79999999999999999999999876222 289999999999
Q ss_pred hCCHHHHHHHhhcCCCCcccccCCCCCH-HHHHHHcCCHHHHHHHHHcCCcccccC
Q 008557 271 KGRTQIVRCLLSIEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDH 325 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad~n~~d~~G~Tp-L~~A~~~~~~~i~~~Ll~~ga~~~~~~ 325 (561)
.|+.+++++|++ .|+++|.+|..|+|| ||+|+..++.+++++|+++|++++..+
T Consensus 171 ~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 171 NGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp TTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred cChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 999999999999 799999999999998 999999999999999999999987654
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.7e-34 Score=274.07 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=191.8
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 153 (561)
+.++++.+...|..+..+.+... .....+..|..|.||||+|+..|+.++++.|++.++. ..++
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~ 65 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHS------------KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN----VNLD 65 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHH------------CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT----CCGG
T ss_pred CccHHHHHHHhCCHHHHHHHHhc------------CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc----cccc
Confidence 34677788888876665544321 1122345789999999999999999999999999742 2244
Q ss_pred c-CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557 154 K-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH 232 (561)
Q Consensus 154 ~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh 232 (561)
. .|..|.||||+|+..|+.+++++|++++...+.+..+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||
T Consensus 66 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 145 (228)
T 2dzn_A 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145 (228)
T ss_dssp GCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHH
Confidence 5 889999999999999999999999998544788889999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557 233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312 (561)
Q Consensus 233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~ 312 (561)
+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|.||||+|... ++.+
T Consensus 146 ~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~ 222 (228)
T 2dzn_A 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKK 222 (228)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHH
Confidence 9999999999999999994445999999999999999999999999999338999999999999999999754 5666
Q ss_pred HHHH
Q 008557 313 LLKE 316 (561)
Q Consensus 313 ~Ll~ 316 (561)
+|++
T Consensus 223 ~l~~ 226 (228)
T 2dzn_A 223 FFLN 226 (228)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.7e-34 Score=284.68 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=180.7
Q ss_pred ccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557 68 DKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKN---KDSPGKRGDLQLHLAARAGNLSRVMEILQSCD 144 (561)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~ 144 (561)
+.++..+.++++.+...|+.+..+.+.. .+.+ ++.+|..|.||||+||..|+.++|+.|++++.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-------------~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 69 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLG-------------FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHH-------------HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHh-------------cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3456778899999999998877665542 2333 77889999999999999999999999999854
Q ss_pred ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC----------------------------------------
Q 008557 145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL---------------------------------------- 184 (561)
Q Consensus 145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~---------------------------------------- 184 (561)
.++.+|..|.||||+|+..|+.+++++|++++..
T Consensus 70 ------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (282)
T 1oy3_D 70 ------GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143 (282)
T ss_dssp ------CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred ------CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhh
Confidence 4788999999999999999999999999997422
Q ss_pred -----CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-CCcHHHHHHhCCCHHHHHHHhcCCCCcccccc
Q 008557 185 -----ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-GQTALHMAVKGQNEDIVLELIRPDPSVLKLED 258 (561)
Q Consensus 185 -----~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d 258 (561)
.+++..+..|.||||+|+..|+..+.++|.+.+.+++..+.. |+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 144 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d 222 (282)
T 1oy3_D 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARM 222 (282)
T ss_dssp CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred hhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccc
Confidence 125667889999999999999999999999988888888754 999999999999999999999999987 9999
Q ss_pred cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557 259 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306 (561)
Q Consensus 259 ~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~ 306 (561)
..|+||||+|+..|+.+++++|++ +|++++.+|..|.|||++|....
T Consensus 223 ~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 223 YGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp TTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred cCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 999999999999999999999999 89999999999999999998654
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-34 Score=285.64 Aligned_cols=211 Identities=21% Similarity=0.240 Sum_probs=191.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (561)
Q Consensus 116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~ 195 (561)
.+..|.||||.||..|+.++|+.|++.+. .++..|..|.||||+||..|+.++|++|+++ +.+++..|..|.
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~ 107 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGA------DINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGW 107 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCC------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCC
Confidence 34578899999999999999999999854 3788999999999999999999999999998 678889999999
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCC-----------------------
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS----------------------- 252 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~----------------------- 252 (561)
||||+|+..|+..+.++|...+.+++..|..|.||||+|+..++.++++.++.....
T Consensus 108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (299)
T 1s70_B 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999887754322
Q ss_pred ---cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCC
Q 008557 253 ---VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP 329 (561)
Q Consensus 253 ---~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~ 329 (561)
.....+..|.||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus 188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 266 (299)
T 1s70_B 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266 (299)
T ss_dssp TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 123356789999999999999999999999 8999999999999999999999999999999999999999888888
Q ss_pred CHHHHH
Q 008557 330 SATKQL 335 (561)
Q Consensus 330 ~~~~~l 335 (561)
+|....
T Consensus 267 t~l~~A 272 (299)
T 1s70_B 267 TAFDVA 272 (299)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 876544
No 36
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.8e-33 Score=285.93 Aligned_cols=242 Identities=20% Similarity=0.198 Sum_probs=208.6
Q ss_pred CCCCccccccc---ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHH
Q 008557 53 LGPMEKQQSFH---GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAAR 129 (561)
Q Consensus 53 ~g~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~ 129 (561)
.|+.+.+..+. +...+.++..+.++++.+...|+.+..+.+. +.+++++.+|..|.||||+|+.
T Consensus 34 ~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 34 SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-------------QHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-------------HcCCCCCccCCCCCcHHHHHHH
Confidence 45555554443 3456667778889999999999877666543 4678999999999999999999
Q ss_pred cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc--------------------
Q 008557 130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-------------------- 189 (561)
Q Consensus 130 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~-------------------- 189 (561)
.|+.+++++|++++. .++..|..|.||||+|+..|+.+++++|+++ +.+++.
T Consensus 101 ~g~~~iv~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 101 YGHYEVTELLLKHGA------CVNAMDLWQFTPLHEAASKNRVEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp TTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred CCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHH
Confidence 999999999999854 4788999999999999999999999999998 344333
Q ss_pred ----------------------------------CCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557 190 ----------------------------------PARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDKKGQTALH 232 (561)
Q Consensus 190 ----------------------------------~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~~g~tpLh 232 (561)
.+..|.||||+|+.. +...+.++|.+.+.+++.+|..|+||||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 252 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH 252 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence 346678999999999 6678999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557 233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312 (561)
Q Consensus 233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~ 312 (561)
+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+|+| +.++++
T Consensus 253 ~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a----~~~~~~ 326 (351)
T 3utm_A 253 VAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG----NEAVQQ 326 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHS----CHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhh----hHHHHH
Confidence 999999999999999999997 9999999999999999999999999999 8999999999999999998 678999
Q ss_pred HHHHcCCcc
Q 008557 313 LLKEAGAAH 321 (561)
Q Consensus 313 ~Ll~~ga~~ 321 (561)
+|.+.+...
T Consensus 327 ~l~~~~~~~ 335 (351)
T 3utm_A 327 ILSESTPMR 335 (351)
T ss_dssp HHHHC----
T ss_pred HHHhccccc
Confidence 998877653
No 37
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-34 Score=296.77 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=198.2
Q ss_pred CCCCCCC-CCCChHHHHHHHcCCHHHHHHHHhcCCcc--chhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q 008557 111 KNKDSPG-KRGDLQLHLAARAGNLSRVMEILQSCDAN--EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA 187 (561)
Q Consensus 111 ~~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~ 187 (561)
.++|..| ..|+||||+||..|+.++++.|+...... ..+.+++..|..|.||||+|+..|+.++|++|+++ ++++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~ 192 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADP 192 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCS
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC--CCCC
Confidence 5778888 78999999999999999988887310000 00345889999999999999999999999999998 7788
Q ss_pred CcCCCCCCcHHHHHHHcCHHHHHHHHhcCC---CCccccCCCCCcHHHHHHhCC---CHHHHHHHhcCCCCcccc-----
Q 008557 188 SIPARNGYDSFHVAAKQGHLVVKALVSKDP---STGFRTDKKGQTALHMAVKGQ---NEDIVLELIRPDPSVLKL----- 256 (561)
Q Consensus 188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~---~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~n~----- 256 (561)
+..+.+|.||||+|+..|+..+.++|...+ .+.+..|..|.||||+|+..+ +.+++++|++.++++ +.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~ 271 (373)
T 2fo1_E 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAAR 271 (373)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGG
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccc
Confidence 899999999999999999999999998877 677888999999999999998 899999999999887 43
Q ss_pred ---cccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHH
Q 008557 257 ---EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK 333 (561)
Q Consensus 257 ---~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~ 333 (561)
.|..|+||||+|+..|+.+++++|++..|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|..
T Consensus 272 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~ 351 (373)
T 2fo1_E 272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ 351 (373)
T ss_dssp TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred cCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence 67799999999999999999999998666999999999999999999999999999999999999998888988876
Q ss_pred HHH
Q 008557 334 QLK 336 (561)
Q Consensus 334 ~l~ 336 (561)
...
T Consensus 352 ~A~ 354 (373)
T 2fo1_E 352 LAQ 354 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.3e-34 Score=287.77 Aligned_cols=211 Identities=18% Similarity=0.235 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc----cCCCCCCcHHHHHHHh---CcHHHHHHHHhcC
Q 008557 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS----KKNQEGETPLYVAAES---GHALIVEEMLQHM 182 (561)
Q Consensus 110 ~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~ 182 (561)
++..+..|..|+||||+||+.|+.++|+.|++.+... +..++ ..|..|.||||+|+.. |+.++|++|++++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRS--KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHS--CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhc--ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3455678999999999999999999999999853211 11122 4588999999999987 9999999999983
Q ss_pred CC---------CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC--------------CCCcHHHHHHhCCC
Q 008557 183 NL---------ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK--------------KGQTALHMAVKGQN 239 (561)
Q Consensus 183 ~~---------~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~--------------~g~tpLh~A~~~g~ 239 (561)
.. ......|..|.||||+|+..|+..+.++|.+.+++++..|. .|+||||+|+..|+
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence 21 11223567899999999999999999999999999988887 79999999999999
Q ss_pred HHHHHHHhc---CCCCcccccccCCchHHHHHHHhCC---------HHHHHHHhhcCCCCcc-------cccCCCCCHHH
Q 008557 240 EDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDVN-------SLNKAGESPLD 300 (561)
Q Consensus 240 ~~iv~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~~g~---------~~iv~~LL~~~gad~n-------~~d~~G~TpL~ 300 (561)
.+++++|++ .+.++ +.+|.+|+||||+|+..|+ .+++++|++ .|+++| .+|..|+||||
T Consensus 161 ~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~ 238 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLA 238 (273)
T ss_dssp HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred HHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHH
Confidence 999999999 88887 9999999999999999998 899999999 799987 58999999999
Q ss_pred HHHHcCCHHHHHHHHHcCC-ccccc
Q 008557 301 VAEKLGNTELFSLLKEAGA-AHSKD 324 (561)
Q Consensus 301 ~A~~~~~~~i~~~Ll~~ga-~~~~~ 324 (561)
+|+..|+.+++++|+++|| ++...
T Consensus 239 ~A~~~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 239 LAASSGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHTC-----
T ss_pred HHHHhChHHHHHHHHHCCCCCchhh
Confidence 9999999999999999999 55443
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3e-33 Score=281.04 Aligned_cols=223 Identities=23% Similarity=0.251 Sum_probs=190.6
Q ss_pred CCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHh
Q 008557 72 STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL 151 (561)
Q Consensus 72 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 151 (561)
..+++++..+...|..+..+.+. +.++++|..|..|.||||+||..|+.++|++|++.+ ++
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~ 98 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLL-------------ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG------AN 98 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHH-------------HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT------CC
T ss_pred cCCccHHHHHHHcCCHHHHHHHH-------------HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC------CC
Confidence 34568888888888877666543 457889999999999999999999999999999985 44
Q ss_pred hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHH------------------
Q 008557 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALV------------------ 213 (561)
Q Consensus 152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL------------------ 213 (561)
++..|..|.||||+|+..|+.++|++|+++ +.+++..+.+|.||||+|+..|+..+...+
T Consensus 99 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 176 (299)
T 1s70_B 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176 (299)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence 888999999999999999999999999998 678888999999999999999887554432
Q ss_pred ---------hcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcC
Q 008557 214 ---------SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284 (561)
Q Consensus 214 ---------~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~ 284 (561)
..........+..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .
T Consensus 177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ 254 (299)
T 1s70_B 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-N 254 (299)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHH-c
Confidence 2233333446788999999999999999999999999987 9999999999999999999999999999 8
Q ss_pred CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557 285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317 (561)
Q Consensus 285 gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ 317 (561)
|++++.+|..|+||||+|.+.....+.+++.+.
T Consensus 255 gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~ 287 (299)
T 1s70_B 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287 (299)
T ss_dssp TCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999765544444444443
No 40
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=8.2e-34 Score=279.10 Aligned_cols=195 Identities=21% Similarity=0.245 Sum_probs=173.5
Q ss_pred CCChHHHHHHHcCCHHHH----HHHHhcCCccchhHhhcc----CCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCC
Q 008557 119 RGDLQLHLAARAGNLSRV----MEILQSCDANEAKDLLSK----KNQEGETPLYVAAES---GHALIVEEMLQHMNLETA 187 (561)
Q Consensus 119 ~G~T~Lh~Aa~~g~~~~v----~~Ll~~~~~~~~~~~~~~----~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~~~~~~ 187 (561)
.|+||||.||..|+.+.| ++|++.+. .++. .|..|.||||+|+.. |+.++|++|++++ .+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~------~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~ 72 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK------YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDS 72 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC------CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC------CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccc
Confidence 488999999999999854 55555643 3666 899999999999999 9999999999983 222
Q ss_pred C-----------cCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-------------CCcHHHHHHhCCCHHHH
Q 008557 188 S-----------IPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-------------GQTALHMAVKGQNEDIV 243 (561)
Q Consensus 188 ~-----------~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv 243 (561)
. ..|..|.||||+|+..|+..+.++|.+.+++++..|.. |+||||+|+..|+.+++
T Consensus 73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 152 (256)
T 2etb_A 73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152 (256)
T ss_dssp TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 2 23467999999999999999999999999999888876 99999999999999999
Q ss_pred HHHhc---CCCCcccccccCCchHHHHHHH--hCCHH-------HHHHHhhcCCCCc-------ccccCCCCCHHHHHHH
Q 008557 244 LELIR---PDPSVLKLEDNKGNTALHIAIK--KGRTQ-------IVRCLLSIEGIDV-------NSLNKAGESPLDVAEK 304 (561)
Q Consensus 244 ~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~--~g~~~-------iv~~LL~~~gad~-------n~~d~~G~TpL~~A~~ 304 (561)
++|++ .|+++ +.+|.+|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|+.
T Consensus 153 ~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~ 230 (256)
T 2etb_A 153 TYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAK 230 (256)
T ss_dssp HHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHH
Confidence 99999 88887 9999999999999999 78888 9999999 79999 9999999999999999
Q ss_pred cCCHHHHHHHHHcCCcccc
Q 008557 305 LGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 305 ~~~~~i~~~Ll~~ga~~~~ 323 (561)
.|+.+++++|+++|++...
T Consensus 231 ~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 231 EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhCCCCCCC
Confidence 9999999999999987643
No 41
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.3e-32 Score=262.02 Aligned_cols=215 Identities=25% Similarity=0.220 Sum_probs=195.1
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192 (561)
Q Consensus 113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~ 192 (561)
++..|..|.||||.|+..|+.++++.|++.+. .++..|..|.||||+|+..|+.+++++|++++ .......+.
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~ 74 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY------DVRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGD 74 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTT
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCC------CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCC
Confidence 45678899999999999999999999999853 47888999999999999999999999999983 233334556
Q ss_pred CCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272 (561)
Q Consensus 193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g 272 (561)
.|.||||+|+..|+..+.++|.+.+.+++..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..+
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~ 153 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRT 153 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhC
Confidence 6999999999999999999999999999999999999999999999999999999999987 899999999999999777
Q ss_pred C-HHHHHHHhhcCCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 273 R-TQIVRCLLSIEGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 273 ~-~~iv~~LL~~~gad~n~~d~-~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
+ .+++++|++ .|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus 154 ~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 154 HSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218 (240)
T ss_dssp CSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred ChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 6 789999998 8999999997 9999999999999999999999999999988888888876543
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.5e-32 Score=250.77 Aligned_cols=158 Identities=31% Similarity=0.479 Sum_probs=134.4
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240 (561)
Q Consensus 161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~ 240 (561)
++|+.||+.|+.++|++||++ +++++.+|.+|+||||+|+..++..+..+|...+.+++.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence 467777777777777777776 566777777777777777777777777777777777888899999999999999999
Q ss_pred HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~ 320 (561)
++|++|++.|+++ |.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+..|+.+++++|+++||+
T Consensus 84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999987 9999999999999999999999999999 8999999999999999999999999999999999998
Q ss_pred cc
Q 008557 321 HS 322 (561)
Q Consensus 321 ~~ 322 (561)
++
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 75
No 43
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5e-33 Score=278.68 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=201.1
Q ss_pred ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557 66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA 145 (561)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~ 145 (561)
.++.++..+.++++.+...|+.+..+.+. +.+++++.. +|+||||+|+..|+.++|++|++++.
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga- 86 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLL-------------NAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGL- 86 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHH-------------HTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC-
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHH-------------hCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence 46677788889999999999887766543 346777776 48999999999999999999999854
Q ss_pred cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCC-CcHHHHHHHcCHHHHHHHHhcCCCCccccC
Q 008557 146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG-YDSFHVAAKQGHLVVKALVSKDPSTGFRTD 224 (561)
Q Consensus 146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g-~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d 224 (561)
+++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..| .||||+|+..|+..+.++|...+.... |
T Consensus 87 -----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~ 157 (285)
T 3kea_A 87 -----DDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D 157 (285)
T ss_dssp -----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--C
T ss_pred -----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--c
Confidence 4788999999999999999999999999999 77888999999 799999999999999999988877652 3
Q ss_pred C-CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchH-HHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557 225 K-KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302 (561)
Q Consensus 225 ~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp-Lh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A 302 (561)
. .|+||||+|+..|+.+++++|++.|+++ +.+|..|+|| ||+|+..|+.+++++|++ .|++++..|. .|
T Consensus 158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a 228 (285)
T 3kea_A 158 LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------EN 228 (285)
T ss_dssp CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GG
T ss_pred ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hh
Confidence 3 8999999999999999999999999887 9999999998 999999999999999999 8999999984 56
Q ss_pred HHcCCHHHHHHHHHcCCcccccCC
Q 008557 303 EKLGNTELFSLLKEAGAAHSKDHG 326 (561)
Q Consensus 303 ~~~~~~~i~~~Ll~~ga~~~~~~~ 326 (561)
+..|+.+++++|+++|++......
T Consensus 229 ~~~~~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 229 VLLDDAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp GTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred hhcCCHHHHHHHHHcCCCCCCccc
Confidence 778999999999999998765443
No 44
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=4.5e-33 Score=274.32 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=174.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHh----cCCccchhHhhcc----CCCCCCcHHHHHH---HhCcHHHHHHHHhcCCC-
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQ----SCDANEAKDLLSK----KNQEGETPLYVAA---ESGHALIVEEMLQHMNL- 184 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~----~~~~g~TpLh~Aa---~~g~~~iv~~LL~~~~~- 184 (561)
+..|.|+||.||+.|+.+.++.|++ .+.. ++. .|..|.||||+|+ ..|+.++|++|++.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~------~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 75 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR------LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC------TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence 5678999999999999997666666 5432 333 3478999999999 77999999999997321
Q ss_pred --------CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHhCCCHHH
Q 008557 185 --------ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD--------------KKGQTALHMAVKGQNEDI 242 (561)
Q Consensus 185 --------~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~i 242 (561)
......|..|+||||+|+..|+..++++|.+.+++++..| ..|+||||+|+..|+.++
T Consensus 76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 155 (260)
T 3jxi_A 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155 (260)
T ss_dssp TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence 2344456689999999999999999999999999998888 689999999999999999
Q ss_pred HHHHhc---CCCCcccccccCCchHHHHHHHhCC---------HHHHHHHhhcCCCCc-------ccccCCCCCHHHHHH
Q 008557 243 VLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDV-------NSLNKAGESPLDVAE 303 (561)
Q Consensus 243 v~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~~g~---------~~iv~~LL~~~gad~-------n~~d~~G~TpL~~A~ 303 (561)
+++|++ .++++ +.+|..|+||||+|+..|+ .+++++|++ .|+++ +.+|..|.||||+|+
T Consensus 156 v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 156 VHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHH
Confidence 999999 88887 9999999999999999888 799999999 79998 789999999999999
Q ss_pred HcCCHHHHHHHHHcCCcccc
Q 008557 304 KLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 304 ~~~~~~i~~~Ll~~ga~~~~ 323 (561)
..|+.+++++|+++|++...
T Consensus 234 ~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 234 KTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HTTCHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHhCCCccc
Confidence 99999999999999987654
No 45
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.1e-31 Score=244.44 Aligned_cols=159 Identities=28% Similarity=0.397 Sum_probs=146.9
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557 122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA 201 (561)
Q Consensus 122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A 201 (561)
++|+.||+.|+.++|+.||+.+ ++++.+|..|.||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G------advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG------ADVNASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHH
Confidence 5799999999999999999985 44899999999999999999999999999998 778899999999999999
Q ss_pred HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557 202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281 (561)
Q Consensus 202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL 281 (561)
+..|+..+.++|.+.+++++.+|.+|+||||+|+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus 78 ~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred hcCCCCccc
Q 008557 282 SIEGIDVNS 290 (561)
Q Consensus 282 ~~~gad~n~ 290 (561)
+ .|++++.
T Consensus 157 ~-~GA~ie~ 164 (169)
T 4gpm_A 157 K-QGGWLEH 164 (169)
T ss_dssp T-C------
T ss_pred H-CCCCcCC
Confidence 9 8999864
No 46
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.9e-31 Score=254.80 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=176.9
Q ss_pred CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHH
Q 008557 131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVK 210 (561)
Q Consensus 131 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~ 210 (561)
|+.+++++|++++.. ..+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+..+.
T Consensus 2 g~~~~i~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 2 DAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ---CCEETTEETTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHcCCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 678889999988653 2344589999999999999999999999998 678888999999999999999999887
Q ss_pred HHHhcCCC-CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc
Q 008557 211 ALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289 (561)
Q Consensus 211 ~lL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n 289 (561)
++|...+. ..+..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++ .|++++
T Consensus 75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~ 152 (223)
T 2f8y_A 75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKD 152 (223)
T ss_dssp HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTT
T ss_pred HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence 77776554 78888999999999999999999999999999987 8999999999999999999999999999 799999
Q ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557 290 SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK 336 (561)
Q Consensus 290 ~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~ 336 (561)
.+|..|.||||+|+..++.+++++|+++|++++..+..+.+|.....
T Consensus 153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 199 (223)
T 2f8y_A 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199 (223)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHH
Confidence 99999999999999999999999999999999988888888876543
No 47
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=265.87 Aligned_cols=193 Identities=22% Similarity=0.289 Sum_probs=178.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh 199 (561)
+.+++|.|+..|+.+.++.++.... ...++..|..|.||||+|+..|+.++|++|++.+ ..+++..+..|+||||
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIM 150 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHH
Confidence 4678999999999999999998743 3558999999999999999999999999999982 3478889999999999
Q ss_pred HHH-----HcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCH
Q 008557 200 VAA-----KQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274 (561)
Q Consensus 200 ~Aa-----~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~ 274 (561)
+|+ ..++..+.++|...+......|..|+||||+|+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence 999 668888888888888888888999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318 (561)
Q Consensus 275 ~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g 318 (561)
+++++|++..|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus 230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99999998779999999999999999999999999999999875
No 48
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=4.7e-32 Score=277.04 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=115.7
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCccchhHhhcc-CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHH
Q 008557 122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSK-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV 200 (561)
Q Consensus 122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~ 200 (561)
+.+|+|+..+..++++.|++.+ .+++. .|..|.||||+||..|+.++|++|+++ +++++.+|.+|+||||+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~ 170 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVK 170 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 3356666666666666666553 23566 667777777777777777777777776 45666667777777777
Q ss_pred HHHcCH----HHHHHHHhcCCCCccccCCCCCcHHHHHHh----CCCHHHHHHHhcC--------------------CCC
Q 008557 201 AAKQGH----LVVKALVSKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRP--------------------DPS 252 (561)
Q Consensus 201 Aa~~g~----~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~ 252 (561)
|+..|+ ..+..++....++++.+|..|+||||+|+. .|+.+++++|++. +.+
T Consensus 171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~ 250 (327)
T 1sw6_A 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250 (327)
T ss_dssp HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence 777666 233444444444556666777777777776 6677777777655 444
Q ss_pred cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHH
Q 008557 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT 332 (561)
Q Consensus 253 ~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~ 332 (561)
+ +.+|..|.||||.|+. +++|++ . ++|.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+|.
T Consensus 251 ~-~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL 320 (327)
T 1sw6_A 251 P-NDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320 (327)
T ss_dssp ----------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred c-ccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 4 6666677777777664 666666 2 4666677777777777777777777777777777766666666654
No 49
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.8e-30 Score=247.43 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=170.1
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 153 (561)
+.++++.+...|..+..+.+. + ..+.+++.+|..|+||||+|+..|+.++++.|++.++... ....+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll-------~-----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~ 69 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLL-------K-----FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV-FEPMT 69 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHH-------T-----TTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHH-------H-----hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhc-ccccc
Confidence 457777888888765555432 2 3478999999999999999999999999999999865310 11126
Q ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC-------------CCCcHHHHHHHcCHHHHHHHHhcCCCCc
Q 008557 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR-------------NGYDSFHVAAKQGHLVVKALVSKDPSTG 220 (561)
Q Consensus 154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~-------------~g~tpLh~Aa~~g~~~v~~lL~~~~~~~ 220 (561)
..|..|.||||+|+..|+.+++++|+++ +.+++..+. .|.||||+|+..|+..+.++|.+.++++
T Consensus 70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 147 (232)
T 2rfa_A 70 SELYEGQTALHIAVINQNVNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147 (232)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred ccCCCCcCHHHHHHHcCCHHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 6788999999999999999999999998 555555544 7999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHhCCCHHHH----HHHhcCCCCcc-----cccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccc
Q 008557 221 FRTDKKGQTALHMAVKGQNEDIV----LELIRPDPSVL-----KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291 (561)
Q Consensus 221 ~~~d~~g~tpLh~A~~~g~~~iv----~~Ll~~~~~~~-----n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~ 291 (561)
+.+|..|+||||+|+..|+.+++ ++|++.+++.. +.+|..|+||||+|+..|+.+++++|++ +|.+....
T Consensus 148 ~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~-~g~~~~~~ 226 (232)
T 2rfa_A 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ-KRKHIAAA 226 (232)
T ss_dssp TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHHC---
T ss_pred CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCccchhh
Confidence 99999999999999999999988 99999998763 6889999999999999999999999999 66655443
Q ss_pred c
Q 008557 292 N 292 (561)
Q Consensus 292 d 292 (561)
.
T Consensus 227 ~ 227 (232)
T 2rfa_A 227 H 227 (232)
T ss_dssp -
T ss_pred h
Confidence 3
No 50
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.9e-31 Score=258.92 Aligned_cols=219 Identities=18% Similarity=0.136 Sum_probs=183.8
Q ss_pred CCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchh
Q 008557 70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK 149 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~ 149 (561)
.+..+.++++.+...|..+..+.+. + .....+.+++.+|..|.||||+|+..|+.++|++|++.+.
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll-------~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----- 69 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVI-------R--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC----- 69 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCC-------C-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-----
T ss_pred CCCCCCchhHHHHHcCChhHHHHHH-------H--HhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----
Confidence 4455668888888888654444321 1 1113356899999999999999999999999999998854
Q ss_pred HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC----CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL----ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK 225 (561)
Q Consensus 150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~----~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~ 225 (561)
.++.+|..|.||||+|+..|+.+++++|++++.. ......+..|.||||+|+..|+..+.++|...+.+++..|.
T Consensus 70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 148 (236)
T 1ikn_D 70 -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 148 (236)
T ss_dssp -CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred -CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 4788999999999999999999999999998431 22467788999999999999999999999999999988887
Q ss_pred -CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc--cccCCCCCHHHHH
Q 008557 226 -KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN--SLNKAGESPLDVA 302 (561)
Q Consensus 226 -~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n--~~d~~G~TpL~~A 302 (561)
.|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++.. .++..|.||.+.+
T Consensus 149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 149 CNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhh
Confidence 9999999999999999999999999987 9999999999999999999999999999 899876 8889999998766
Q ss_pred HHc
Q 008557 303 EKL 305 (561)
Q Consensus 303 ~~~ 305 (561)
...
T Consensus 227 ~~~ 229 (236)
T 1ikn_D 227 SEF 229 (236)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.3e-30 Score=266.33 Aligned_cols=182 Identities=21% Similarity=0.219 Sum_probs=153.0
Q ss_pred ccCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCc---HHHHHHHHhcCC
Q 008557 108 ERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH---ALIVEEMLQHMN 183 (561)
Q Consensus 108 ~~~~~~~~-~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~~~ 183 (561)
+.++++|. .|..|.||||+||..|+.++|++||+++ ++++.+|..|.||||+|+..|+ .++++.|++++
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G------ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~- 190 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL- 190 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh-
Confidence 67899999 8999999999999999999999999985 4488999999999999999999 78888888873
Q ss_pred CCCCCcCCCCCCcHHHHHHH----cCHHHHHHHHhcC--------------------CCCccccCCCCCcHHHHHHhCCC
Q 008557 184 LETASIPARNGYDSFHVAAK----QGHLVVKALVSKD--------------------PSTGFRTDKKGQTALHMAVKGQN 239 (561)
Q Consensus 184 ~~~~~~~~~~g~tpLh~Aa~----~g~~~v~~lL~~~--------------------~~~~~~~d~~g~tpLh~A~~~g~ 239 (561)
..+++..|.+|+||||+|+. .|+..+.++|.+. +.+++..|..|+||||.|+.
T Consensus 191 ~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~--- 267 (327)
T 1sw6_A 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--- 267 (327)
T ss_dssp GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---
T ss_pred hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---
Confidence 35688899999999999999 8888887777654 77888899999999999996
Q ss_pred HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306 (561)
Q Consensus 240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~ 306 (561)
+++|++.+ ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+..|
T Consensus 268 ---~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 ---LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ---HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred ---HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 89999883 48899999999999999999999999999 89999999999999999998654
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=8.5e-30 Score=239.24 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=148.6
Q ss_pred HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT 229 (561)
Q Consensus 150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t 229 (561)
.+++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+..+.++|...+.+++..|..|+|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 34677888888888888888888888888887 5667778888888888888888888888888878888888999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHH
Q 008557 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309 (561)
Q Consensus 230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~ 309 (561)
|||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 999999999999999999999887 8999999999999999999999999999 79999999999999999999999999
Q ss_pred HHHHHHHcC
Q 008557 310 LFSLLKEAG 318 (561)
Q Consensus 310 i~~~Ll~~g 318 (561)
++++|+++|
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999875
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.1e-29 Score=234.01 Aligned_cols=168 Identities=27% Similarity=0.385 Sum_probs=108.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh 199 (561)
+.||||.||..|+.++++.|++.++ ..++..|..|.||||+|+..|+.++|++|+++ +.+++..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~--------- 65 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHIL--------- 65 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCS-----GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCC---------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCc-----ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhh---------
Confidence 4578888888888888888888764 33777888888888888888888888888887 4444444
Q ss_pred HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557 200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 279 (561)
Q Consensus 200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~ 279 (561)
|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++
T Consensus 66 ------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~ 120 (172)
T 3v30_A 66 ------------------------AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEA 120 (172)
T ss_dssp ------------------------CTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ------------------------cccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 444555555555556666666666655554 5556666666666666666666666
Q ss_pred HhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCC
Q 008557 280 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP 329 (561)
Q Consensus 280 LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~ 329 (561)
|++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.
T Consensus 121 Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~ 169 (172)
T 3v30_A 121 LLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA 169 (172)
T ss_dssp HHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-----
T ss_pred HHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCC
Confidence 665 5666666666666666666666666666666666665544444333
No 54
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=3.1e-29 Score=236.66 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=167.4
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 153 (561)
+.+++..+...|..+..+. ++. ..+.+++..|..|.||||+|+..|+.++|++|++.+. +++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~-------ll~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~ 66 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKE-------ILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA------DIN 66 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHH-------HHT-----CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTT
T ss_pred cccHHHHHHHhccHHHHHH-------HHH-----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCC
Confidence 3466666777776544443 332 4456899999999999999999999999999999854 478
Q ss_pred cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCC-CCccccCCCCCcHHH
Q 008557 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDP-STGFRTDKKGQTALH 232 (561)
Q Consensus 154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~-~~~~~~d~~g~tpLh 232 (561)
..|..|.||||+|+..|+.+++++|++. .+.+.+..+..|.||||+|+..|+..+.++|.+.+ .+++.+|..|+||||
T Consensus 67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 67 LQNSISDSPYLYAGAQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145 (201)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence 8999999999999999999999999976 36678889999999999999999998888777766 889999999999999
Q ss_pred HHHhCCC-----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCC
Q 008557 233 MAVKGQN-----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285 (561)
Q Consensus 233 ~A~~~g~-----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~g 285 (561)
+|+..++ .+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|
T Consensus 146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~G 201 (201)
T 3hra_A 146 EAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQ-YN 201 (201)
T ss_dssp HHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHT-CC
T ss_pred HHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHh-cC
Confidence 9999998 99999999999998 9999999999999999999999999998 54
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.4e-29 Score=231.69 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=122.9
Q ss_pred CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCC
Q 008557 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239 (561)
Q Consensus 160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~ 239 (561)
.||||.|+..|+.++++.|++.+ +...+..|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~~~~~ 48 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG----------------------------------DNLVNKPDERGFTPLIWASAFGE 48 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC----------------------------------SGGGGCCCTTSCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC----------------------------------cccccCCCCCCCCHHHHHHHcCC
Confidence 46666666666666666666651 12245568889999999999999
Q ss_pred HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 008557 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319 (561)
Q Consensus 240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga 319 (561)
.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus 49 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 126 (172)
T 3v30_A 49 IETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126 (172)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999887 9999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred cccccCCCCCCHHHHHHH
Q 008557 320 AHSKDHGKPPSATKQLKQ 337 (561)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~ 337 (561)
+++..+..+.+|......
T Consensus 127 ~~~~~~~~g~t~l~~A~~ 144 (172)
T 3v30_A 127 DLTTEADSGYTPMDLAVA 144 (172)
T ss_dssp CTTCCCTTSCCHHHHHHH
T ss_pred CccccCCCCCCHHHHHHH
Confidence 999988889998766543
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=4.1e-29 Score=229.01 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=123.9
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238 (561)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g 238 (561)
|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 45555555555555555555555 3444555555555555555555555555555555556667788889999999999
Q ss_pred CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318 (561)
Q Consensus 239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g 318 (561)
+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999998887 8889999999999999999999999998 79999999999999999999999999999999988
Q ss_pred Cccc
Q 008557 319 AAHS 322 (561)
Q Consensus 319 a~~~ 322 (561)
++..
T Consensus 159 ~~~~ 162 (167)
T 3v31_A 159 LKLL 162 (167)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
No 57
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.6e-29 Score=250.99 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=170.1
Q ss_pred cccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHH
Q 008557 67 IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKD----SPGKRGDLQLHLAARA---GNLSRVMEI 139 (561)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~G~T~Lh~Aa~~---g~~~~v~~L 139 (561)
.+..+..+.++++.+...|..+..+.+.... . +.+.+++ ..|..|+||||+||.. |+.++|++|
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---~------~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFL---Q------RSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHH---H------HSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHH---h------hcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 4456667778999999999877766544321 1 2344444 4588999999999987 999999999
Q ss_pred HhcCCcc-chhHhhcc----CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC--------------CCCcHHHH
Q 008557 140 LQSCDAN-EAKDLLSK----KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--------------NGYDSFHV 200 (561)
Q Consensus 140 l~~~~~~-~~~~~~~~----~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~--------------~g~tpLh~ 200 (561)
++.+... ....+++. .|..|.||||+|+..|+.++|++|+++ +.+++..+. .|.||||+
T Consensus 77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~ 154 (273)
T 2pnn_A 77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSL 154 (273)
T ss_dssp HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHH
Confidence 9985421 11122333 677999999999999999999999998 667777776 79999999
Q ss_pred HHHcCHHHHHHHHhc---CCCCccccCCCCCcHHHHHHhCCC---------HHHHHHHhcCCCCcc------cccccCCc
Q 008557 201 AAKQGHLVVKALVSK---DPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGN 262 (561)
Q Consensus 201 Aa~~g~~~v~~lL~~---~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------n~~d~~G~ 262 (561)
|+..|+..+.++|.+ .+.+++.+|..|+||||+|+..|+ .+++++|++.|+++. +.+|..|+
T Consensus 155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~ 234 (273)
T 2pnn_A 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234 (273)
T ss_dssp HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC
T ss_pred HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCC
Confidence 999999999999998 899999999999999999999888 899999999988762 35899999
Q ss_pred hHHHHHHHhCCHHHHHHHhhcCCC-CcccccCCCCCHHH
Q 008557 263 TALHIAIKKGRTQIVRCLLSIEGI-DVNSLNKAGESPLD 300 (561)
Q Consensus 263 TpLh~Aa~~g~~~iv~~LL~~~ga-d~n~~d~~G~TpL~ 300 (561)
||||+|+..|+.+++++|++ .|+ |+......+.+|-+
T Consensus 235 TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 235 TPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHHH 272 (273)
T ss_dssp CHHHHHHHTTCHHHHHHHHH-HHTC--------------
T ss_pred CHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhccC
Confidence 99999999999999999999 688 88888777776643
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=5.1e-29 Score=226.93 Aligned_cols=157 Identities=25% Similarity=0.331 Sum_probs=118.0
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238 (561)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g 238 (561)
..||||.|+..|+.+++++|+++ +.+++..+..|.||||+|+. |+..+.++|.+.+.+++.+|..|+||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 44666666666666666666665 44555666666666666666 6666666666666666677778888888888888
Q ss_pred CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC-cccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-VNSLNKAGESPLDVAEKLGNTELFSLLKEA 317 (561)
Q Consensus 239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ 317 (561)
+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 888888888888776 7888888888888888888888888888 5666 588888888888888888888888888888
Q ss_pred CCc
Q 008557 318 GAA 320 (561)
Q Consensus 318 ga~ 320 (561)
||+
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=8e-29 Score=232.59 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=152.9
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192 (561)
Q Consensus 113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~ 192 (561)
+|.+|..|+||||+|+..|+.++++.|++.+ ..++..|..|.||||+|+..|+.+++++|+++ +.+++..|.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~ 99 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDF 99 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCT
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc------cccccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCC
Confidence 3578999999999999999999999999984 44788999999999999999999999999998 678888999
Q ss_pred CCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272 (561)
Q Consensus 193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g 272 (561)
.|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~ 178 (192)
T 2rfm_A 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFG 178 (192)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999987 999999999999999999
Q ss_pred CHHHHHHHhhc
Q 008557 273 RTQIVRCLLSI 283 (561)
Q Consensus 273 ~~~iv~~LL~~ 283 (561)
+.+++++|++.
T Consensus 179 ~~~~v~~Ll~~ 189 (192)
T 2rfm_A 179 RQEVIKIFTEV 189 (192)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHhc
Confidence 99999999983
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.7e-28 Score=225.72 Aligned_cols=158 Identities=28% Similarity=0.396 Sum_probs=119.9
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236 (561)
Q Consensus 157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~ 236 (561)
..+.||||.||..|+.++|++|+++ +.+++..|.+|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 3445556666666666666666555 34455555556666666666665555555555555666677888889999999
Q ss_pred CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316 (561)
Q Consensus 237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~ 316 (561)
.|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++
T Consensus 90 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999988887 8888899999999999999999999998 789999999999999999999999999999988
Q ss_pred cC
Q 008557 317 AG 318 (561)
Q Consensus 317 ~g 318 (561)
.|
T Consensus 168 ~G 169 (169)
T 2y1l_E 168 LN 169 (169)
T ss_dssp C-
T ss_pred cC
Confidence 76
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.9e-29 Score=226.04 Aligned_cols=160 Identities=25% Similarity=0.310 Sum_probs=147.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197 (561)
Q Consensus 118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp 197 (561)
....||||.|+..|+.++++.|++.+. .++..|..|.||||+|+. |+.+++++|+++ +.+++..+..|.||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 73 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNV------NVNAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAV 73 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCC------CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCC------CccccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence 346799999999999999999998753 378899999999999999 999999999998 67888899999999
Q ss_pred HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557 198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277 (561)
Q Consensus 198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv 277 (561)
||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.+++.++..|..|+||||+|+..|+.+++
T Consensus 74 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred HHHhhcCCCC
Q 008557 278 RCLLSIEGID 287 (561)
Q Consensus 278 ~~LL~~~gad 287 (561)
++|++ .|+|
T Consensus 154 ~~Ll~-~GAd 162 (162)
T 1ihb_A 154 SLMQA-NGAG 162 (162)
T ss_dssp HHHHH-TC--
T ss_pred HHHHH-hCCC
Confidence 99999 7875
No 62
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3.6e-29 Score=245.85 Aligned_cols=203 Identities=20% Similarity=0.193 Sum_probs=167.9
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHhcCCcc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDS----PGKRGDLQLHLAARA---GNLSRVMEILQSCDAN 146 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~ 146 (561)
+.++++.+...|..+..+.+.. .++ +.+.+++. .|..|+||||+|+.. |+.++|+.|++.+...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~---~l~------~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLE---YLR------WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS 72 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHH---HHH------HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHH---HHH------HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence 3466777777777665543322 111 45788888 899999999999999 9999999999985421
Q ss_pred c-----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC-------------CCcHHHHHHHcCHHH
Q 008557 147 E-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN-------------GYDSFHVAAKQGHLV 208 (561)
Q Consensus 147 ~-----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~-------------g~tpLh~Aa~~g~~~ 208 (561)
. ........|..|.||||+|+..|+.++|++|+++ +.+++..+.. |.||||+|+..|+..
T Consensus 73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~ 150 (256)
T 2etb_A 73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150 (256)
T ss_dssp TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 1 0000113457899999999999999999999998 6677777776 999999999999999
Q ss_pred HHHHHhc---CCCCccccCCCCCcHHHHHHh--CCCHH-------HHHHHhcCCCCcc------cccccCCchHHHHHHH
Q 008557 209 VKALVSK---DPSTGFRTDKKGQTALHMAVK--GQNED-------IVLELIRPDPSVL------KLEDNKGNTALHIAIK 270 (561)
Q Consensus 209 v~~lL~~---~~~~~~~~d~~g~tpLh~A~~--~g~~~-------iv~~Ll~~~~~~~------n~~d~~G~TpLh~Aa~ 270 (561)
+.++|.+ .+++++.+|..|+||||+|+. .++.+ ++++|++.|+++. +.+|..|+||||+|+.
T Consensus 151 ~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~ 230 (256)
T 2etb_A 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230 (256)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence 9999998 899999999999999999999 88988 9999999987763 7899999999999999
Q ss_pred hCCHHHHHHHhhcCCCCc
Q 008557 271 KGRTQIVRCLLSIEGIDV 288 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad~ 288 (561)
.|+.+++++|++ +|.+.
T Consensus 231 ~g~~~~v~~Ll~-~g~~~ 247 (256)
T 2etb_A 231 EGKIEIFRHILQ-REFSG 247 (256)
T ss_dssp TTCHHHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHHh-CCCCC
Confidence 999999999999 56544
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=7.6e-29 Score=226.73 Aligned_cols=159 Identities=25% Similarity=0.325 Sum_probs=113.0
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236 (561)
Q Consensus 157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~ 236 (561)
.+|.||||.|+..|+.++++.|++. .+.+....+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 3344444444444444444444443 123333344444444444444444444444444455556667788899999999
Q ss_pred CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316 (561)
Q Consensus 237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~ 316 (561)
.|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|.. ++.+++++|++
T Consensus 85 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~ 161 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161 (165)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred cCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence 99999999999998887 8889999999999999999999999998 799999999999999999776 88899999998
Q ss_pred cCC
Q 008557 317 AGA 319 (561)
Q Consensus 317 ~ga 319 (561)
+||
T Consensus 162 ~gA 164 (165)
T 3twr_A 162 DAA 164 (165)
T ss_dssp C--
T ss_pred ccc
Confidence 886
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.8e-28 Score=227.66 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=116.3
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238 (561)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g 238 (561)
+.||||.||..|+.++|++|++. .+.+++..+..|.||||+|+..|+..+.++|...+.+++..|..|+||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 44445555555555555555444 23334444444555555555555544444444445555566777888888888888
Q ss_pred CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318 (561)
Q Consensus 239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g 318 (561)
+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888876 8888888888888888888888888888 78888888888888888888888888888888888
Q ss_pred CcccccCC
Q 008557 319 AAHSKDHG 326 (561)
Q Consensus 319 a~~~~~~~ 326 (561)
++++....
T Consensus 162 ~~~~~~~~ 169 (179)
T 3f6q_A 162 QNLNRIPY 169 (179)
T ss_dssp CCCSCBCC
T ss_pred cCcccCCc
Confidence 88765433
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.2e-28 Score=224.07 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=149.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (561)
Q Consensus 119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL 198 (561)
.|.||||.|+..|+.++++.|++.+. .++..|..|.||||+|+..|+.+++++|+++ +.+++..+..|.|||
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 73 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN------VINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESAL 73 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC------CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence 58899999999999999999999853 3889999999999999999999999999998 678888999999999
Q ss_pred HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557 199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278 (561)
Q Consensus 199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~ 278 (561)
|+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHhhcCCCC
Q 008557 279 CLLSIEGID 287 (561)
Q Consensus 279 ~LL~~~gad 287 (561)
+|++ ++.+
T Consensus 153 ~L~~-~~~~ 160 (167)
T 3v31_A 153 VIES-HLLK 160 (167)
T ss_dssp HHHH-HHHH
T ss_pred HHHH-HHHH
Confidence 9998 4443
No 66
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=240.28 Aligned_cols=166 Identities=23% Similarity=0.322 Sum_probs=154.2
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHH-----HhCcHHHHHHHHhcCCCCCC
Q 008557 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA-----ESGHALIVEEMLQHMNLETA 187 (561)
Q Consensus 113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa-----~~g~~~iv~~LL~~~~~~~~ 187 (561)
+|.+|..|+||||+||..|+.++|+.|++.+.. +++..|..|.||||+|+ ..|+.+++++|++. +...
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~--g~~~ 176 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVC-----KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL--GNIN 176 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC-----CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH--SCTT
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc--CCCc
Confidence 567899999999999999999999999998752 38899999999999999 77999999999998 5667
Q ss_pred CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc-CCCCcccccccCCchHHH
Q 008557 188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALH 266 (561)
Q Consensus 188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh 266 (561)
...+..|.||||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|++ .|+++ +.+|.+|+||||
T Consensus 177 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~ 255 (276)
T 4hbd_A 177 AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALM 255 (276)
T ss_dssp CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999 77776 999999999999
Q ss_pred HHHHhCCHHHHHHHhhcCCC
Q 008557 267 IAIKKGRTQIVRCLLSIEGI 286 (561)
Q Consensus 267 ~Aa~~g~~~iv~~LL~~~ga 286 (561)
+|+..|+.+++++|+++.++
T Consensus 256 ~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 256 VALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHHHTCHHHHHHHHHHCCC
T ss_pred HHHHcCCHHHHHHHHhccCC
Confidence 99999999999999996543
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3e-28 Score=226.10 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=156.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197 (561)
Q Consensus 118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp 197 (561)
+.+.++||.||..|+.++|+.|++.++. +++..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 75 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEN-----DLNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTP 75 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTS-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcc-----cccccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 4678999999999999999999998653 4888999999999999999999999999998 67888899999999
Q ss_pred HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557 198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277 (561)
Q Consensus 198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv 277 (561)
||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~ 154 (179)
T 3f6q_A 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLR 154 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred HHHhhcCCCCcccccCCC
Q 008557 278 RCLLSIEGIDVNSLNKAG 295 (561)
Q Consensus 278 ~~LL~~~gad~n~~d~~G 295 (561)
++|++ .|++++..+..+
T Consensus 155 ~~L~~-~g~~~~~~~~~~ 171 (179)
T 3f6q_A 155 ERAEK-MGQNLNRIPYKD 171 (179)
T ss_dssp HHHHH-TTCCCSCBCCCC
T ss_pred HHHHH-hhcCcccCCccc
Confidence 99999 899999887665
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=7.5e-28 Score=221.36 Aligned_cols=158 Identities=28% Similarity=0.353 Sum_probs=147.7
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (561)
Q Consensus 116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~ 195 (561)
....+.|+||.||+.|+.++|++|++++. +++..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~ 81 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGA------DVNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGM 81 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCC
Confidence 45677899999999999999999999854 4788999999999999999999999999998 678888999999
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+
T Consensus 82 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~ 160 (169)
T 2y1l_E 82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNED 160 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred HHHHHhh
Q 008557 276 IVRCLLS 282 (561)
Q Consensus 276 iv~~LL~ 282 (561)
++++|++
T Consensus 161 ~~~~L~~ 167 (169)
T 2y1l_E 161 LAEILQK 167 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999998
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.2e-27 Score=216.15 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=119.0
Q ss_pred CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCC
Q 008557 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239 (561)
Q Consensus 160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~ 239 (561)
.||||.|+..|+.+++++|++.+ .+.. .+..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 46666666666666666666662 2222 45566666666666666666666666666667778888899999999999
Q ss_pred HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314 (561)
Q Consensus 240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L 314 (561)
.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999988887 8888999999999999999999999998 7999999999999999999999999998876
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.2e-27 Score=216.39 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=102.9
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240 (561)
Q Consensus 161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~ 240 (561)
||||.|+..|+.+++++|++. .+.+++..+..|.||||+ +..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 445555555555555555444 233444444445555555 444444444444444555555677778888888888888
Q ss_pred HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317 (561)
Q Consensus 241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ 317 (561)
+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 82 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888887776 7778888888888888888888888887 4 78888888888888888888888888887763
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=4.3e-28 Score=221.73 Aligned_cols=161 Identities=25% Similarity=0.257 Sum_probs=147.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (561)
Q Consensus 116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~ 195 (561)
.|..|+||||.|++.|+.++++.|++..+ ...+..+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~ 76 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGL 76 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCC-----CCccccccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCC
Confidence 46788999999999999999999998754 34778889999999999999999999999998 678889999999
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+. |+.+
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~ 154 (165)
T 3twr_A 77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTD 154 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHH
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChH
Confidence 9999999999999999999999999999999999999999999999999999999987 9999999999999877 9999
Q ss_pred HHHHHhhcCCC
Q 008557 276 IVRCLLSIEGI 286 (561)
Q Consensus 276 iv~~LL~~~ga 286 (561)
++++|++ .|+
T Consensus 155 i~~~L~~-~gA 164 (165)
T 3twr_A 155 IQDLLRG-DAA 164 (165)
T ss_dssp HHHHHHT-C--
T ss_pred HHHHHhh-ccc
Confidence 9999998 564
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=3.8e-27 Score=212.85 Aligned_cols=151 Identities=25% Similarity=0.302 Sum_probs=141.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh 199 (561)
+.||||.|++.|+.++++.|++.+.+ ++ .|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~------~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 72 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAP------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCC------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCC------CC-cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 46899999999999999999998653 23 588999999999999999999999998 6778889999999999
Q ss_pred HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557 200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 279 (561)
Q Consensus 200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~ 279 (561)
+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 9999999999999999999999998
Q ss_pred H
Q 008557 280 L 280 (561)
Q Consensus 280 L 280 (561)
|
T Consensus 152 L 152 (153)
T 1awc_B 152 L 152 (153)
T ss_dssp H
T ss_pred h
Confidence 7
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.9e-27 Score=213.92 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=143.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH 199 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh 199 (561)
|.||||.|+..|+.++++.|++..+ ..++..|..|.||||+ +..|+.+++++|+++ +.+++..|..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTC-----CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhC-----cCccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHH
Confidence 5699999999999999999999832 3478899999999999 999999999999998 6788899999999999
Q ss_pred HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557 200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 279 (561)
Q Consensus 200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~ 279 (561)
+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++. +++ +.+|.+|.||||+|+..|+.+++++
T Consensus 74 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 665 9999999999999999999999999
Q ss_pred Hhh
Q 008557 280 LLS 282 (561)
Q Consensus 280 LL~ 282 (561)
|++
T Consensus 152 Ll~ 154 (156)
T 1bd8_A 152 LQG 154 (156)
T ss_dssp HHT
T ss_pred HHh
Confidence 997
No 74
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=8.2e-28 Score=236.58 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=164.6
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHhcCCcc
Q 008557 74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPG----KRGDLQLHLAA---RAGNLSRVMEILQSCDAN 146 (561)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~G~T~Lh~Aa---~~g~~~~v~~Ll~~~~~~ 146 (561)
+.+++..+...|..+..+.+... ++ +.+.+++..+ ..|.||||+|+ +.|+.++|+.|++.+...
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~---l~------~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 75 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSF---LL------THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHH---HH------HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCHHHHHHHHHH---HH------hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence 34666777777776655443321 11 2455566444 77999999999 779999999999985421
Q ss_pred c-----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC--------------CCCCcHHHHHHHcCHH
Q 008557 147 E-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA--------------RNGYDSFHVAAKQGHL 207 (561)
Q Consensus 147 ~-----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~--------------~~g~tpLh~Aa~~g~~ 207 (561)
. .....+..|..|.||||+|+..|+.++|++|+++ +.+++..+ ..|.||||+|+..|+.
T Consensus 76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 153 (260)
T 3jxi_A 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153 (260)
T ss_dssp TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence 1 0122455566999999999999999999999998 67777777 6899999999999999
Q ss_pred HHHHHHhc---CCCCccccCCCCCcHHHHHHhCCC---------HHHHHHHhcCCCCcc------cccccCCchHHHHHH
Q 008557 208 VVKALVSK---DPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGNTALHIAI 269 (561)
Q Consensus 208 ~v~~lL~~---~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------n~~d~~G~TpLh~Aa 269 (561)
.+.++|.+ .+++++.+|..|+||||+|+..++ .+++++|++.|+++. +.+|..|+||||+|+
T Consensus 154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence 99999999 899999999999999999998877 799999999987752 678999999999999
Q ss_pred HhCCHHHHHHHhhcCCCCc
Q 008557 270 KKGRTQIVRCLLSIEGIDV 288 (561)
Q Consensus 270 ~~g~~~iv~~LL~~~gad~ 288 (561)
..|+.+++++||+ +|.+.
T Consensus 234 ~~g~~~~v~~Ll~-~g~~~ 251 (260)
T 3jxi_A 234 KTGKIGIFQHIIR-REIAD 251 (260)
T ss_dssp HTTCHHHHHHHHH-HHHHH
T ss_pred HcCCHHHHHHHHH-hCCCc
Confidence 9999999999999 56543
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.8e-30 Score=249.27 Aligned_cols=187 Identities=20% Similarity=0.137 Sum_probs=167.5
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (561)
Q Consensus 114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~ 193 (561)
+..+..|.||||+||..|+.++|+.|++.+. +++..|..|.||||+||..|+.++|++|+++ +.+++..|..
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~ 86 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMN------DPSQPNEEGITALHNAICGANYSIVDFLITA--GANVNSPDSH 86 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCC
Confidence 3445667889999999999999999999854 4788999999999999999999999999998 6788899999
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHH--HhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMA--VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
|+||||+|+..|+..+.++|.+.+++++..| ..|+||||+| +..|+.+++++|++.|+++ +..|..|.||||.++.
T Consensus 87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~ 165 (229)
T 2vge_A 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSA 165 (229)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhh
Confidence 9999999999999999999999999988886 6999999999 9999999999999999987 8899999999997655
Q ss_pred hCCHHHHHHHhhcCCCC--cccccCCCCCHHHHHHHcCCHHHHHH
Q 008557 271 KGRTQIVRCLLSIEGID--VNSLNKAGESPLDVAEKLGNTELFSL 313 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad--~n~~d~~G~TpL~~A~~~~~~~i~~~ 313 (561)
.+. .++|++ .|++ ++.+|..|+||||+|+..|+.++++.
T Consensus 166 ~~~---~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 166 EFG---DELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp SST---TBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred ccc---cccCcc-ccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 543 367777 7888 78899999999999999999888764
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.1e-28 Score=237.25 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=124.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCc
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD 196 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~t 196 (561)
+..|.||||.|++.|+.+.++.||+++.+ ++. +..|.||||+|+..|+.++|++|++. +.+++..|.+|.|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~------~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t 72 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR------VKF-NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGIT 72 (239)
T ss_dssp ------------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCC
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCC------ccc-CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence 45689999999999999999999998643 443 47789999999999999999999988 5678888899999
Q ss_pred HHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCc-hHHHHH--HHhCC
Q 008557 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIA--IKKGR 273 (561)
Q Consensus 197 pLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~A--a~~g~ 273 (561)
|||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|. ||||+| +..|+
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhcc
Confidence 999999999998888888888888888999999999999999999999999998887 77777666 999998 77888
Q ss_pred HHHHHHHhhcCCCCcccc---------cCCCCCHHHHHHHcCC
Q 008557 274 TQIVRCLLSIEGIDVNSL---------NKAGESPLDVAEKLGN 307 (561)
Q Consensus 274 ~~iv~~LL~~~gad~n~~---------d~~G~TpL~~A~~~~~ 307 (561)
.+++++|++ .|++++.. |..+.++++++...|.
T Consensus 152 ~~~~~~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 152 TQCSQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CCHHHHHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999999998 67777665 5567888887776654
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=4.8e-27 Score=228.77 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=122.8
Q ss_pred CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV 235 (561)
Q Consensus 156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~ 235 (561)
+..|.||||.|+..|+.++++.|+++ +.+.+. +..|.||||.|+..|+..+.++|...+.+++.+|..|+||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 35699999999999999999999998 455554 367899999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCC-CHHHHH--HHcCCHHHHH
Q 008557 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE-SPLDVA--EKLGNTELFS 312 (561)
Q Consensus 236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~-TpL~~A--~~~~~~~i~~ 312 (561)
..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|. ||||+| +..|+.++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence 999999999999999987 9999999999999999999999999999 8999999998887 999999 7789999999
Q ss_pred HHHHcCCccccc
Q 008557 313 LLKEAGAAHSKD 324 (561)
Q Consensus 313 ~Ll~~ga~~~~~ 324 (561)
+|+++|++++..
T Consensus 157 ~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 157 FLYGVQEKMGIM 168 (239)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHhhhccccc
Confidence 999999987654
No 78
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2e-25 Score=197.44 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=103.0
Q ss_pred CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccC-CchHHH
Q 008557 188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK-GNTALH 266 (561)
Q Consensus 188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~-G~TpLh 266 (561)
+..+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+. |+.+++++|++.++++ +.+|.. |+||||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH 83 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence 3334444444444444444444444444444455667788999999999 9999999999999887 888988 999999
Q ss_pred HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~ 320 (561)
+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus 84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999998 8999999999999999999999999999999999885
No 79
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2e-25 Score=202.35 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=99.0
Q ss_pred hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc-H
Q 008557 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT-A 230 (561)
Q Consensus 152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t-p 230 (561)
.+..+..|.||||+|+..|+.++|++|+++ +.+++..|..|+||||+|+ .|+..+.++|.+.+.+++.+|..|+| |
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 345566777888888888888888888876 5566667777777777764 66676767776667777777888888 8
Q ss_pred HHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302 (561)
Q Consensus 231 Lh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A 302 (561)
||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 88888888888888888888877 8888888888888888888888888888 7888888888888887643
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.9e-27 Score=226.82 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=155.6
Q ss_pred HHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhc
Q 008557 136 VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSK 215 (561)
Q Consensus 136 v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~ 215 (561)
++.||+++... ...+..+..|.||||+|+..|+.++|++|++. +.+++..|.+|.||||+|+..|+..+.++|.+
T Consensus 1 v~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 1 MRSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp ---------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CeehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45677765542 22456677888999999999999999999998 66888899999999999999999999999999
Q ss_pred CCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHHH--HHhCCHHHHHHHhhcCCCCccccc
Q 008557 216 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIA--IKKGRTQIVRCLLSIEGIDVNSLN 292 (561)
Q Consensus 216 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~A--a~~g~~~iv~~LL~~~gad~n~~d 292 (561)
.+++++..|..|+||||+|+..|+.+++++|++.|+++ +..| .+|+||||+| +..|+.+++++|++ .|++++.+|
T Consensus 76 ~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~ 153 (229)
T 2vge_A 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMN 153 (229)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSG
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCccccc
Confidence 99999999999999999999999999999999999998 7765 6999999999 99999999999999 799999999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCc--ccccCCCCCCHH
Q 008557 293 KAGESPLDVAEKLGNTELFSLLKEAGAA--HSKDHGKPPSAT 332 (561)
Q Consensus 293 ~~G~TpL~~A~~~~~~~i~~~Ll~~ga~--~~~~~~~~~~~~ 332 (561)
..|.||++.+.... ..++|++.|++ .+..+..+.+|.
T Consensus 154 ~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL 192 (229)
T 2vge_A 154 SGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDW 192 (229)
T ss_dssp GGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSE
T ss_pred CCchHHHHHHhhcc---ccccCccccccccccccCCCcccHH
Confidence 99999998655443 33678889998 455566666654
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=6.2e-26 Score=212.34 Aligned_cols=156 Identities=8% Similarity=0.037 Sum_probs=106.0
Q ss_pred CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCCcHHHHHHHcCHH----HHHHHHhcCCCCccccCCCCCcHHHHH
Q 008557 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL----VVKALVSKDPSTGFRTDKKGQTALHMA 234 (561)
Q Consensus 160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~----~v~~lL~~~~~~~~~~d~~g~tpLh~A 234 (561)
.++||.|++.|+.+.++.++.. + .+..+ ..|+||||+|+..|+. .+.++|...|++++.+|..|+||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 3455555555555555555544 1 11222 4455555555555542 244555555555555666666666666
Q ss_pred HhCCC------HHHHHHHhcCCCCcccccccCCc-hHHHHHHHhC-----CHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557 235 VKGQN------EDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKG-----RTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302 (561)
Q Consensus 235 ~~~g~------~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~Aa~~g-----~~~iv~~LL~~~gad~n~~d~~G~TpL~~A 302 (561)
+..|+ .+++++|+++|+++ |.+|..|+ ||||+|+..+ +.+++++|++..|+|+|.+|..|.||||+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 66554 57888888888887 88888888 8888888843 456888888756899999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCc
Q 008557 303 EKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 303 ~~~~~~~i~~~Ll~~ga~ 320 (561)
++.++.+++++|.+...+
T Consensus 162 ~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999888876543
No 82
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=4.3e-27 Score=243.95 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=129.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC---CCcCCCC
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET---ASIPARN 193 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~---~~~~~~~ 193 (561)
+.+++||||+||+.|+.++|++|++.+..+ ...+..|..|.||||+||..|+.++|++|++++ ++ .+..+.+
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g--ad~~~~~i~~~~ 163 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAEN 163 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHHHHSHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccccCCCC
Confidence 455679999999999999999999986532 112344567889999999999999999999983 22 2333334
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCCCccc--cCCCCCcHHHHHH-hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFR--TDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
.||||+|+..|+.+++++|...+++++. .|..|+||||+|+ .+|+.++|++|++.++ .|.||||+|+.
T Consensus 164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~ 234 (376)
T 2aja_A 164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFE 234 (376)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTT
T ss_pred -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHH
Confidence 8999999999999999999999888766 7888999999999 9999999999998652 38899999999
Q ss_pred hCCHHHHHHHhhcCCCCc
Q 008557 271 KGRTQIVRCLLSIEGIDV 288 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad~ 288 (561)
.|+.+++++|++ .|+++
T Consensus 235 ~g~~evv~lL~~-~ga~~ 251 (376)
T 2aja_A 235 YGEKYVNPFIAR-HVNRL 251 (376)
T ss_dssp TTTTTHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHh-cCccc
Confidence 999999999997 45544
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.1e-25 Score=210.70 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=140.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCC-CCCCcHHHHHHHhCcH----HHHHHHHhcCCCCCCCcCCCCC
Q 008557 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHA----LIVEEMLQHMNLETASIPARNG 194 (561)
Q Consensus 120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~TpLh~Aa~~g~~----~iv~~LL~~~~~~~~~~~~~~g 194 (561)
+.++||.||+.|+.+.++.++..+. +..+ ..|+||||+|+..|+. +++++|+++ +++++.+|.+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--------EDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEG 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCC
Confidence 5689999999999999999997643 3334 6799999999999975 599999998 78899999999
Q ss_pred CcHHHHHHHcCH------HHHHHHHhcCCCCccccCCCCC-cHHHHHHhCC-----CHHHHHHHhc-CCCCcccccccCC
Q 008557 195 YDSFHVAAKQGH------LVVKALVSKDPSTGFRTDKKGQ-TALHMAVKGQ-----NEDIVLELIR-PDPSVLKLEDNKG 261 (561)
Q Consensus 195 ~tpLh~Aa~~g~------~~v~~lL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~n~~d~~G 261 (561)
+||||+|+..|+ ..+.++|.+.+++++.+|..|+ ||||+|+..+ +.+++++|++ .|+++ +.+|..|
T Consensus 76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G 154 (186)
T 3t8k_A 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWG 154 (186)
T ss_dssp CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTS
T ss_pred CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCC
Confidence 999999999986 4778889999999999999999 9999999954 3569999999 89887 9999999
Q ss_pred chHHHHHHHhCCHHHHHHHhhcCCCCccccc
Q 008557 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 292 (561)
Q Consensus 262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d 292 (561)
+||||+|+..|+.++|++|++ ...+.+.++
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~-~~~~~~~~~ 184 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMED-YIKKYNLKE 184 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHH-HHHHHhccc
Confidence 999999999999999999998 444455444
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=8.4e-25 Score=193.43 Aligned_cols=131 Identities=20% Similarity=0.200 Sum_probs=80.4
Q ss_pred hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-CCcH
Q 008557 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-GQTA 230 (561)
Q Consensus 152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-g~tp 230 (561)
++..|..|.||||+|+..|+.+++++|+++ +.+++..|..|+||||+|+. |+..+.++|.+.+.+++.+|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 333444444444444444444444444443 23333444444444444444 4444444444444445556666 7888
Q ss_pred HHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC
Q 008557 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287 (561)
Q Consensus 231 Lh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad 287 (561)
||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence 88888888888888888888776 7788888888888888888888888887 5664
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.3e-24 Score=197.05 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=117.5
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193 (561)
Q Consensus 114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~ 193 (561)
+..+..|.||||+|+..|+.++|++|++++. .++..|..|.||||+|+ .|+.+++++|+++ +.+++.+|..
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~ 76 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGA------NPNAPNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPA 76 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTC------CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCC
Confidence 3457889999999999999999999998843 48889999999999996 9999999999998 6788999999
Q ss_pred CCc-HHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHH
Q 008557 194 GYD-SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268 (561)
Q Consensus 194 g~t-pLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A 268 (561)
|.| |||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+.+
T Consensus 77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP 151 (156)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence 999 999999999999999999999999999999999999999999999999999999998 99999999998854
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2.3e-23 Score=180.39 Aligned_cols=126 Identities=37% Similarity=0.594 Sum_probs=99.4
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhC
Q 008557 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG 237 (561)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~ 237 (561)
+|.||||+|+..|+.+++++|+++ +.+ ++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~---------------------------------~~~~~~~g~t~L~~A~~~ 45 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GAD---------------------------------VNAKDKNGRTPLHLAARN 45 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCC---------------------------------TTCCCTTSCCHHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCC---------------------------------CCCcCCCCCcHHHHHHHc
Confidence 466777777777777777777766 222 334566777888888888
Q ss_pred CCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317 (561)
Q Consensus 238 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ 317 (561)
|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++
T Consensus 46 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 46 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 8888888888887776 7788888888888888888888888888 7888888888888888888888888888888888
Q ss_pred CCc
Q 008557 318 GAA 320 (561)
Q Consensus 318 ga~ 320 (561)
||+
T Consensus 124 Gad 126 (126)
T 1n0r_A 124 GAY 126 (126)
T ss_dssp TCC
T ss_pred CCC
Confidence 875
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.6e-23 Score=185.09 Aligned_cols=126 Identities=28% Similarity=0.353 Sum_probs=97.0
Q ss_pred CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV 235 (561)
Q Consensus 156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~ 235 (561)
...+.||||+|+..|+.+++++|+++ +.+++..|..|+||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-----------------------------------g~~~~~~~~~g~t~L~~A~ 55 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-----------------------------------GADVNAKDEYGLTPLYLAT 55 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-----------------------------------TCCTTCCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-----------------------------------CCCCCCcCCCCCCHHHHHH
Confidence 34455666666666666666666655 3344455677788888888
Q ss_pred hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315 (561)
Q Consensus 236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll 315 (561)
..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+
T Consensus 56 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 133 (136)
T 2jab_A 56 AHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133 (136)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 888888888888888776 7888888888888888888888888888 78888888888888888888888888888888
Q ss_pred HcC
Q 008557 316 EAG 318 (561)
Q Consensus 316 ~~g 318 (561)
++|
T Consensus 134 ~~G 136 (136)
T 2jab_A 134 KLN 136 (136)
T ss_dssp HC-
T ss_pred HcC
Confidence 876
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8.3e-23 Score=176.87 Aligned_cols=126 Identities=34% Similarity=0.552 Sum_probs=99.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF 198 (561)
Q Consensus 119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL 198 (561)
+|+||||+|+..|+.+++++|++. +..++..|..|.||||+|+..|+.+++++|+++ +.+++.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~--------- 63 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNA--------- 63 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTC---------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcc---------
Confidence 589999999999999999999986 566889999999999999999999999999997 444333
Q ss_pred HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557 199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278 (561)
Q Consensus 199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~ 278 (561)
+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.++++
T Consensus 64 ------------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~ 118 (126)
T 1n0r_A 64 ------------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118 (126)
T ss_dssp ------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ------------------------cCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHH
Confidence 3555666777777777777777777776665 666777777777777777777777
Q ss_pred HHhhcCCCC
Q 008557 279 CLLSIEGID 287 (561)
Q Consensus 279 ~LL~~~gad 287 (561)
+|++ .|+|
T Consensus 119 ~Ll~-~Gad 126 (126)
T 1n0r_A 119 LLLE-AGAY 126 (126)
T ss_dssp HHHH-HTCC
T ss_pred HHHH-cCCC
Confidence 7776 5654
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=6.8e-23 Score=181.12 Aligned_cols=126 Identities=30% Similarity=0.387 Sum_probs=84.3
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCC
Q 008557 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG 194 (561)
Q Consensus 115 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g 194 (561)
.....|.||||+||..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g 80 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMAN------GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIG 80 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTC
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCC
Confidence 4567789999999999999999999987 567899999999999999999999999999998 55555555444
Q ss_pred CcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc
Q 008557 195 YDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 248 (561)
Q Consensus 195 ~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 248 (561)
.||||+|+..|+..+.++|.+.+.+.+..|..|+||||+|+..|+.+++++|++
T Consensus 81 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444443
No 90
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=6.1e-25 Score=227.79 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=150.0
Q ss_pred CChHHHHHHH-cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCC-CCCcCCCCCCcH
Q 008557 120 GDLQLHLAAR-AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDS 197 (561)
Q Consensus 120 G~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~-~~~~~~~~g~tp 197 (561)
+.+++++|.. .++.+.++.|++.+. ++.||||+||..|+.++|++|++++... .....+..|.||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tp 131 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 131 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCH
Confidence 4568888877 578889999887643 3459999999999999999999984311 112345678899
Q ss_pred HHHHHHcCHHHHHHHHhcCCCC---ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccc--cccCCchHHHHHH-Hh
Q 008557 198 FHVAAKQGHLVVKALVSKDPST---GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL--EDNKGNTALHIAI-KK 271 (561)
Q Consensus 198 Lh~Aa~~g~~~v~~lL~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~--~d~~G~TpLh~Aa-~~ 271 (561)
||+|+..|+.+++++|...+++ .+..+.+ +||||+|+..|+.++|++|++.|+++ +. .|..|+||||+|+ ..
T Consensus 132 L~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~ 209 (376)
T 2aja_A 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGR 209 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHC
Confidence 9999999999999999988864 2222333 89999999999999999999999987 55 8889999999999 99
Q ss_pred CCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323 (561)
Q Consensus 272 g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~ 323 (561)
|+.++|++|++ .|+ .|.||||+|+..|+.+++++|+++|++.+.
T Consensus 210 G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~ 253 (376)
T 2aja_A 210 GHHNVINFLLD-CPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253 (376)
T ss_dssp CCHHHHHHHTT-SHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-CCC-------ccchHHHHHHHCCCHHHHHHHHhcCccccc
Confidence 99999999999 664 288999999999999999999999987644
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1e-24 Score=213.02 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=106.2
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHHH
Q 008557 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMAV 235 (561)
Q Consensus 157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A~ 235 (561)
..|.||||+|+..|+.++|++|++ +.+++..|..|+||||+|+..|+..+.++|...+.+++..| ..|+||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 456677777777777777777776 34556666677777777777777766666666666666666 67888888888
Q ss_pred hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315 (561)
Q Consensus 236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll 315 (561)
..|+.+++++|++.|+++ +.+|..|+||||+|+..++ +..+.||||+|+..|+.+++++|+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence 888888888888888887 8888888888888875221 245788888888888888888888
Q ss_pred HcCCc
Q 008557 316 EAGAA 320 (561)
Q Consensus 316 ~~ga~ 320 (561)
+++.+
T Consensus 181 ~~~~~ 185 (244)
T 3ui2_A 181 GQVFE 185 (244)
T ss_dssp HHHEE
T ss_pred Hhccc
Confidence 87554
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.8e-23 Score=184.86 Aligned_cols=127 Identities=25% Similarity=0.325 Sum_probs=90.7
Q ss_pred CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
|.+|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+.
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHH
Confidence 334444444444444444444444444445556777888888888888888888888888876 8888888888888888
Q ss_pred hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 008557 271 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga 319 (561)
.|+.+++++|++ .|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 86 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 86 NGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 888888888888 788888888888888888888888888777766543
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.1e-22 Score=189.35 Aligned_cols=138 Identities=24% Similarity=0.335 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHh
Q 008557 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMAVK 236 (561)
Q Consensus 158 ~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~ 236 (561)
.|.||||+|+..|+.+++++|++ +.+++..|.+|+||||+|+..|+..+.++|.+.+.+++..| ..|+||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 34444444444444444444444 22334444444444444444444444444444444444444 566677777777
Q ss_pred CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316 (561)
Q Consensus 237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~ 316 (561)
.|+.+++++|++.|+++ +.+|.+|+||||+|+..++. ..+.+||++|+..|+.+++++|.+
T Consensus 120 ~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 120 YVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp TTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 77777777777766665 66677777777777653321 234567777777777777776654
Q ss_pred c
Q 008557 317 A 317 (561)
Q Consensus 317 ~ 317 (561)
+
T Consensus 181 ~ 181 (183)
T 3deo_A 181 Q 181 (183)
T ss_dssp C
T ss_pred h
Confidence 3
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=8.1e-23 Score=180.67 Aligned_cols=129 Identities=26% Similarity=0.278 Sum_probs=80.5
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC
Q 008557 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP 190 (561)
Q Consensus 111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~ 190 (561)
+|+ .+|..|+||||+|+..|+.+++++|++.+. .++.+|..|.||||+|+..|+.+++++|+++ +.+++
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~-- 70 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGS------DPNVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVN-- 70 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT--
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCccc--
Confidence 344 456677777777777777777777776633 3566677777777777777777777777766 33433
Q ss_pred CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus 71 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~ 118 (137)
T 3c5r_A 71 -------------------------------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDD 118 (137)
T ss_dssp -------------------------------CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCC
T ss_pred -------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhh
Confidence 44555666666666666666666666666555 6666666666666666
Q ss_pred hCCHHHHHHHhh
Q 008557 271 KGRTQIVRCLLS 282 (561)
Q Consensus 271 ~g~~~iv~~LL~ 282 (561)
.+..+++++|.+
T Consensus 119 ~~~~~~l~~l~~ 130 (137)
T 3c5r_A 119 ESMKSLLLLPEK 130 (137)
T ss_dssp HHHHHHHSCC--
T ss_pred ccHHHHHhhccc
Confidence 666666555544
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=4.4e-22 Score=194.34 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=127.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCC
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGY 195 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~ 195 (561)
+..|+||||+||+.|+.++|+.|++ +. +++.+|..|.||||+||..|+.++|++|+++ +.+++..+ ..|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~ 112 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DR------DVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGL 112 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TC------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CC------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCC
Confidence 3568999999999999999999998 32 3788999999999999999999999999998 67777777 8899
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+..+.++|...+++++.+|..|+||||+|+..+ .+..+.||||+|+..|+.+
T Consensus 113 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~ 174 (244)
T 3ui2_A 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEK 174 (244)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHH
Confidence 9999999999999999999999999999999999999999622 1256889999999999999
Q ss_pred HHHHHhhcCCCC
Q 008557 276 IVRCLLSIEGID 287 (561)
Q Consensus 276 iv~~LL~~~gad 287 (561)
++++|++ .+.+
T Consensus 175 iv~~L~~-~~~~ 185 (244)
T 3ui2_A 175 VINVLEG-QVFE 185 (244)
T ss_dssp HHHHHHH-HHEE
T ss_pred HHHHHHH-hccc
Confidence 9999998 4433
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=2.5e-22 Score=186.98 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=125.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCC
Q 008557 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGY 195 (561)
Q Consensus 117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~ 195 (561)
+..|+||||+|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|+++ +.+++..+ .+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~ 111 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCC
Confidence 4578899999999999999999998 3 23788999999999999999999999999998 67777777 8899
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..++. ..+.+||++|+..|+.+
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~ 173 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEK 173 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999999974322 35679999999999999
Q ss_pred HHHHHhh
Q 008557 276 IVRCLLS 282 (561)
Q Consensus 276 iv~~LL~ 282 (561)
++++|.+
T Consensus 174 i~~~L~~ 180 (183)
T 3deo_A 174 VINVLEG 180 (183)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999987
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=1.9e-22 Score=193.65 Aligned_cols=138 Identities=27% Similarity=0.344 Sum_probs=96.8
Q ss_pred hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHH
Q 008557 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL 231 (561)
Q Consensus 152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpL 231 (561)
++..+..|.||||+||..|+.++|++|++. +.+++ .+|..|+|||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~---------------------------------~~~~~g~t~L 110 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVN---------------------------------GLDKAGSTAL 110 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTT---------------------------------CCCTTSCCHH
T ss_pred ccccccccccccccccccCcHHHHHHHHhC--CCCcc---------------------------------ccCCCCCCHH
Confidence 344566788899999999998888888886 33333 3456677777
Q ss_pred HHHHhCCCHHHHHHHhcC-CCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHH
Q 008557 232 HMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310 (561)
Q Consensus 232 h~A~~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i 310 (561)
|+|+..|+.+++++|++. +.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus 111 ~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~ 188 (222)
T 3ehr_A 111 YWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASL 188 (222)
T ss_dssp HHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHH
Confidence 777777888888888887 5555 7788888888888888888888888888 688888888888888888888888888
Q ss_pred HHHHHHcCCcccccCC
Q 008557 311 FSLLKEAGAAHSKDHG 326 (561)
Q Consensus 311 ~~~Ll~~ga~~~~~~~ 326 (561)
++.|++.|+.....+.
T Consensus 189 l~~l~~~~~~~~~~~~ 204 (222)
T 3ehr_A 189 LKKKQGTDAVRTLSNA 204 (222)
T ss_dssp HC--------------
T ss_pred HHHHhccchhhhccch
Confidence 8888888887655443
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=4e-22 Score=191.30 Aligned_cols=112 Identities=27% Similarity=0.277 Sum_probs=105.1
Q ss_pred cCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302 (561)
Q Consensus 223 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A 302 (561)
.|..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++..|+++|.+|..|+||||+|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 3677999999999999999999999999887 899999999999999999999999999944999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557 303 EKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL 335 (561)
Q Consensus 303 ~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l 335 (561)
+..|+.+++++|+++|++++..+..+.+|....
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 180 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA 180 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence 999999999999999999999999999887654
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.7e-21 Score=193.98 Aligned_cols=194 Identities=22% Similarity=0.227 Sum_probs=143.9
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY 195 (561)
Q Consensus 116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~ 195 (561)
.|..+.++|+.+...|+..+.+.+....+... ....+ .+.... .....-..+++.... ............
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~----~~kP~-~~s~~~----~~~~fI~aKYl~~~f-~~~~~~~~~~~l 131 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSED----PVKPN-PGSDMI----ARKDYITAKYMERRY-ARKKHADTAAKL 131 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSS----CCSCC-TTCCHH----HHHHHHHHHHTTCTT-SCCCSSSHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhh----cCCCC-CCCCHH----HHHHHHHHHHHHhhc-ccccccccchhh
Confidence 46778899999999999877766554322110 00111 111111 112222223433331 112222223345
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPST------GFRTDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALH 266 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~------~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh 266 (561)
++|+.|+..|+......+...+.+ .+..|..|+||||+|+.. |+.+++++|++.|+++ +.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence 789999999988766665555555 334488899999999998 8999999999999997 999999999999
Q ss_pred HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321 (561)
Q Consensus 267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~ 321 (561)
+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..|+.+++++|+++|++.
T Consensus 211 ~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999 89999999999999999999999999999999999974
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=3.2e-21 Score=167.09 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=82.9
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+..+.+.|...+.+++.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+
T Consensus 9 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~~~ 87 (123)
T 3aaa_C 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVS 87 (123)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHH
Confidence 3333333333333333333333444456777888888888888999999999888886 888889999999999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHH
Q 008557 276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313 (561)
Q Consensus 276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~ 313 (561)
++++|++ .|++++.+|..|.||||+|. ..++.++
T Consensus 88 ~v~~Ll~-~ga~~~~~~~~g~t~l~~A~---~~~~~~l 121 (123)
T 3aaa_C 88 CVKLLLS-KGADKTVKGPDGLTAFEATD---NQAIKAL 121 (123)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHCC---CHHHHHH
T ss_pred HHHHHHH-cCCCCCCcCCCCCCHHHHhC---CHHHHHH
Confidence 9999998 78999999999999999884 4444443
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=197.83 Aligned_cols=144 Identities=21% Similarity=0.140 Sum_probs=116.0
Q ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc------CCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCC
Q 008557 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASI------PARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDK 225 (561)
Q Consensus 155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~------~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~ 225 (561)
....+.++||.|+..|+.+.|+.|+.. +.+++. .+..|.||||+|+.. |+..+.++|...+++++.+|.
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~ 224 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 224 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC
Confidence 345567889999999999999998888 445554 578889999999986 778888888888888888899
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305 (561)
Q Consensus 226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~ 305 (561)
+|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++ .|.||||+|+..
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSW 296 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhc
Confidence 9999999999999999999999999887 8999999999999999999999999998 6765 578999999988
Q ss_pred CCH
Q 008557 306 GNT 308 (561)
Q Consensus 306 ~~~ 308 (561)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=196.92 Aligned_cols=129 Identities=25% Similarity=0.234 Sum_probs=117.0
Q ss_pred CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccc------cCCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccccccCC
Q 008557 191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFR------TDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKG 261 (561)
Q Consensus 191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~~d~~G 261 (561)
...+.++||.|+..|+......|...+.+++. .|..|+||||+|+.. |+.+++++|++.|+++ +.+|.+|
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G 226 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 226 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence 44456899999999999777766677777666 688999999999997 8999999999999987 9999999
Q ss_pred chHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321 (561)
Q Consensus 262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~ 321 (561)
+||||+|+..|+.+++++||+ .|++++.+|.+|.||||+|+..++.+++++|+++|++.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 999999999999999999999 89999999999999999999999999999999999873
No 103
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=2e-21 Score=168.38 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=71.3
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236 (561)
Q Consensus 157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~ 236 (561)
..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 3445555555555555555555554 34445555555555555555555555555555555566667777777777777
Q ss_pred CCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
.|+.+++++|++.++++ +.+|.+|+||||+|+.
T Consensus 83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence 77788888888777776 7777778888887743
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.5e-20 Score=154.55 Aligned_cols=93 Identities=38% Similarity=0.641 Sum_probs=88.0
Q ss_pred CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305 (561)
Q Consensus 226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~ 305 (561)
+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 4899999999999999999999999987 9999999999999999999999999999 8999999999999999999999
Q ss_pred CCHHHHHHHHHcCCc
Q 008557 306 GNTELFSLLKEAGAA 320 (561)
Q Consensus 306 ~~~~i~~~Ll~~ga~ 320 (561)
|+.+++++|+++||+
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999985
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=6e-20 Score=189.58 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCcHHHHHHHc-CHHHHHHHHhcCCCCccccC--CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557 194 GYDSFHVAAKQ-GHLVVKALVSKDPSTGFRTD--KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270 (561)
Q Consensus 194 g~tpLh~Aa~~-g~~~v~~lL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~ 270 (561)
+.||||.|+.. |+..+.+.|...+.+++..| ..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATI 277 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 33444444444 44444444444444444444 55666666666666666666666666655 5666666666666666
Q ss_pred hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557 271 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320 (561)
Q Consensus 271 ~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~ 320 (561)
.|+.+++++||+ .|++++.+|.+|.||||+|+..++.+++++|+.++..
T Consensus 278 ~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 278 LGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 666666666666 5666666666666666666666666666666665543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.4e-19 Score=195.15 Aligned_cols=128 Identities=23% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC------CCCCCcHHHHHHH---cCHHHHHHHHhcCCCCccccCCCCCc
Q 008557 159 GETPLYVAAESGHALIVEEMLQHMNLETASIP------ARNGYDSFHVAAK---QGHLVVKALVSKDPSTGFRTDKKGQT 229 (561)
Q Consensus 159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~------~~~g~tpLh~Aa~---~g~~~v~~lL~~~~~~~~~~d~~g~t 229 (561)
..+.||.|+..|+.++|+.||+. +.+++.. +..|.||||+|+. .|+..+.++|...+++++.+|..|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCc
Confidence 33678888888888888888887 4454444 5556666666644 55555555555555556666666666
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCccc
Q 008557 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 290 (561)
Q Consensus 230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~ 290 (561)
|||+|+..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~ 268 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ-AQAGTFA 268 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHH-TCC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCC
Confidence 666666666666666666666655 6666666666666666666666666666 5665554
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.6e-19 Score=194.77 Aligned_cols=129 Identities=25% Similarity=0.221 Sum_probs=117.1
Q ss_pred CCcHHHHHHHcCHHHHHHHHhcCCCCcccc------CCCCCcHHHHHHh---CCCHHHHHHHhcCCCCcccccccCCchH
Q 008557 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRT------DKKGQTALHMAVK---GQNEDIVLELIRPDPSVLKLEDNKGNTA 264 (561)
Q Consensus 194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp 264 (561)
..+.||.|+..|+..+...|...+.+++.. |..|+||||+||. .|+.++|++|++.|+++ |.+|.+|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 347899999999998888888888887766 8899999999966 99999999999999987 9999999999
Q ss_pred HHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc
Q 008557 265 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324 (561)
Q Consensus 265 Lh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 324 (561)
||+|+..|+.+++++||+ .|+|+|.+|.+|.||||+|+..|+.+++++|+++|++++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 999999999999999999 89999999999999999999999999999999999998764
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.1e-19 Score=187.60 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCcHHHHHHHh-CcHHHHHHHHhcCCCCCCCcCC--CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557 159 GETPLYVAAES-GHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV 235 (561)
Q Consensus 159 g~TpLh~Aa~~-g~~~iv~~LL~~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~ 235 (561)
+.||||.|+.. |+.+++++|+++ +.+++..+ .+|.||||+|+..|+..+.++|...+++++..|..|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 33444444444 444444444443 23333333 34444444444444444444444444445555666666666666
Q ss_pred hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc--CCCCcccccCCCCCHHHHHHHcCC--HHHH
Q 008557 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI--EGIDVNSLNKAGESPLDVAEKLGN--TELF 311 (561)
Q Consensus 236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~--~gad~n~~d~~G~TpL~~A~~~~~--~~i~ 311 (561)
..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+++++|+.. .+.+....+..+.|+++++..... .+-.
T Consensus 277 ~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ 355 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDP 355 (368)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------------
T ss_pred HcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCH
Confidence 666666666666666665 66666666666666666666666666652 122333444556666666655432 2233
Q ss_pred HHHHHcCCc
Q 008557 312 SLLKEAGAA 320 (561)
Q Consensus 312 ~~Ll~~ga~ 320 (561)
+.|.+.+.+
T Consensus 356 ekl~r~~~~ 364 (368)
T 3jue_A 356 EKLSRRSHD 364 (368)
T ss_dssp ---------
T ss_pred HHHHhcCCC
Confidence 444444443
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.2e-19 Score=155.13 Aligned_cols=109 Identities=34% Similarity=0.502 Sum_probs=89.2
Q ss_pred ccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHH
Q 008557 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301 (561)
Q Consensus 222 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~ 301 (561)
.+|.+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHH
Confidence 35778888888888888888888888888776 7888888888888888888888888888 688888888888888888
Q ss_pred HHHcCCHHHHHHHHHcCCcccccCCCCCCHH
Q 008557 302 AEKLGNTELFSLLKEAGAAHSKDHGKPPSAT 332 (561)
Q Consensus 302 A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~ 332 (561)
|+..++.+++++|+++|++++..+..+.+|.
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 8888888888888888888877766665543
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=8.3e-19 Score=174.52 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=68.7
Q ss_pred cHHHHHHHhCcHHHHHHHHhcCCCCC----CCcCCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 008557 161 TPLYVAAESGHALIVEEMLQHMNLET----ASIPARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDKKGQTALHM 233 (561)
Q Consensus 161 TpLh~Aa~~g~~~iv~~LL~~~~~~~----~~~~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~~g~tpLh~ 233 (561)
++|+.|+..|+.+.++.++..+.... .+..+..|.||||+|+.. |+..+.++|...+++++.+|..|+||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 44444444444444444444432211 222344444444444444 44444444444444555556666666666
Q ss_pred HHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC
Q 008557 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287 (561)
Q Consensus 234 A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad 287 (561)
|+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus 212 A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~ 263 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQ-ALSG 263 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence 66666666666666666665 6666666666666666666666666666 4443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.6e-19 Score=152.89 Aligned_cols=108 Identities=30% Similarity=0.389 Sum_probs=81.3
Q ss_pred CCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557 190 PARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269 (561)
Q Consensus 190 ~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa 269 (561)
+|.+|.||||+|+..|+..+.++|...+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 3444444444444444444444444444555566778889999999999999999999998887 888999999999999
Q ss_pred HhCCHHHHHHHhhcCCCCcccccCCCCCHH
Q 008557 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299 (561)
Q Consensus 270 ~~g~~~iv~~LL~~~gad~n~~d~~G~TpL 299 (561)
..|+.+++++|++ .|+++|.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence 9999999999998 7999999999998874
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=7.7e-19 Score=144.14 Aligned_cols=90 Identities=32% Similarity=0.535 Sum_probs=56.0
Q ss_pred cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557 196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275 (561)
Q Consensus 196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~ 275 (561)
||||+|+..|+.++.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+
T Consensus 4 t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~ 82 (93)
T 1n0q_A 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE 82 (93)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHH
Confidence 3333333333333333333333444455666777777777777777777777777766 777777777777777777777
Q ss_pred HHHHHhhcCCCC
Q 008557 276 IVRCLLSIEGID 287 (561)
Q Consensus 276 iv~~LL~~~gad 287 (561)
++++|++ .|++
T Consensus 83 ~~~~Ll~-~ga~ 93 (93)
T 1n0q_A 83 VVKLLLE-AGAY 93 (93)
T ss_dssp HHHHHHH-TTCC
T ss_pred HHHHHHH-cCCC
Confidence 7777776 5653
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2e-17 Score=140.28 Aligned_cols=94 Identities=29% Similarity=0.453 Sum_probs=84.6
Q ss_pred CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCH
Q 008557 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298 (561)
Q Consensus 219 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~Tp 298 (561)
.....|.+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTA 93 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcH
Confidence 34456889999999999999999999999999887 8899999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 008557 299 LDVAEKLGNTELFSLL 314 (561)
Q Consensus 299 L~~A~~~~~~~i~~~L 314 (561)
||+|+..++.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.62 E-value=7.8e-16 Score=130.41 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=61.3
Q ss_pred HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT 229 (561)
Q Consensus 150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t 229 (561)
......|.+|.||||+|+..|+.+++++|+++ +.++ +.+|..|+|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i---------------------------------~~~d~~g~t 59 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMAN--GADV---------------------------------AAKDKNGST 59 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHT--TCCT---------------------------------TCCCTTCCC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHc--CCCC---------------------------------CccCCCCCC
Confidence 34556677777777777777777777777776 3333 344556667
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHH
Q 008557 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280 (561)
Q Consensus 230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~L 280 (561)
|||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus 60 pLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 60 PLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHHHHcCCHHHHHHh
Confidence 777777777777777777776665 66777777777777777777777665
No 115
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.03 E-value=9.5 Score=25.40 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008557 490 HSRWLAVSATVIGGTIMLTTIGSMCYCVI 518 (561)
Q Consensus 490 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 518 (561)
.+...+|...|+++++.+.++....++++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 44566788888888777666665555554
No 116
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.25 E-value=9.6 Score=25.40 Aligned_cols=28 Identities=7% Similarity=0.199 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008557 491 SRWLAVSATVIGGTIMLTTIGSMCYCVI 518 (561)
Q Consensus 491 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 518 (561)
+...+|...|+++++++.++....++++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHh
Confidence 3345677777887666666664544443
No 117
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=51.98 E-value=51 Score=29.34 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=10.2
Q ss_pred HHHHHhHHHHHHHHHHH
Q 008557 427 IFFVFDSLALFISLAVV 443 (561)
Q Consensus 427 ~f~~~~~~a~~~S~~~v 443 (561)
+|+++-.++..+++.++
T Consensus 4 ~F~~~a~~~i~~al~vv 20 (184)
T 3rko_J 4 AFYICGLIAILATLRVI 20 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666665443
No 118
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.71 E-value=35 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008557 492 RWLAVSATVIGGTIMLTTIGSMCYCVIL 519 (561)
Q Consensus 492 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 519 (561)
..++|...+++++++++++..+++.++.
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888777766665543
No 119
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=40.37 E-value=1.2e+02 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008557 462 FVINKLMWLACLFISIAFISLTYV 485 (561)
Q Consensus 462 ~~~~~l~~~~~~~~~~af~~~~~~ 485 (561)
..++.|..++.+|+...|++|+|=
T Consensus 277 ~~mk~LTiit~IflP~T~IaGiyG 300 (339)
T 4ev6_A 277 QIMKILTMVTTIFAVPMWITGIYG 300 (339)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566778999999999999983
No 120
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.26 E-value=82 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 008557 491 SRWLAVSATVIGGTIMLTTIGSM 513 (561)
Q Consensus 491 ~~~~~~~v~~~~~~~~~~~~~~~ 513 (561)
..|..|.+.+++++.++.+++..
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~ 29 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILA 29 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788876666655433
No 121
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=27.84 E-value=1.5e+02 Score=32.08 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008557 460 LVFVINKLMWLACLFISIAFISLTYVVVGEH-----------SRWLAVSATVIGGTIMLTTIGSMCYCV 517 (561)
Q Consensus 460 ~~~~~~~l~~~~~~~~~~af~~~~~~v~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~ 517 (561)
.....++.+|++.+.+.+++...++..++.. ..|+.++.+++.+++.-.++..+.-++
T Consensus 357 ~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYy 425 (766)
T 4a01_A 357 IEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYY 425 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445567778777766666666667666531 135556666666655555555444444
No 122
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=27.71 E-value=4e+02 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008557 503 GTIMLTTIGSMCYCVILHRMEAKK 526 (561)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~ 526 (561)
+.++..+++.++|..+...+++.+
T Consensus 227 ~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 227 VFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666777777777666544
No 123
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.51 E-value=87 Score=21.74 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 008557 491 SRWLAVSATVIGGTIMLTTIGSM 513 (561)
Q Consensus 491 ~~~~~~~v~~~~~~~~~~~~~~~ 513 (561)
..|..|.+.+++++.++.+++..
T Consensus 10 vp~wiIi~svl~GLllL~li~~~ 32 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLA 32 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666555433
No 124
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.25 E-value=1.6e+02 Score=19.47 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.4
Q ss_pred chhHHHHHHHHH
Q 008557 491 SRWLAVSATVIG 502 (561)
Q Consensus 491 ~~~~~~~v~~~~ 502 (561)
+...+|...++|
T Consensus 9 ~~~~~Ia~~vVG 20 (44)
T 2jwa_A 9 SPLTSIISAVVG 20 (44)
T ss_dssp CSHHHHHHHHHH
T ss_pred CcccchHHHHHH
Confidence 445566666677
No 125
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=23.48 E-value=1.3e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 008557 491 SRWLAVSATVIGGTIMLTTIGSM 513 (561)
Q Consensus 491 ~~~~~~~v~~~~~~~~~~~~~~~ 513 (561)
..|..|.+.+++++.++.++...
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777776666555433
No 126
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.86 E-value=1.7e+02 Score=28.84 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008557 462 FVINKLMWLACLFISIAFISLTY 484 (561)
Q Consensus 462 ~~~~~l~~~~~~~~~~af~~~~~ 484 (561)
..++.|-.++.+|+...|++|+|
T Consensus 301 ~imk~LTiit~IflP~T~IaGiy 323 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIY 323 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566778999999999999987
Done!