Query 008558
Match_columns 561
No_of_seqs 332 out of 2244
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 13:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 3E-113 6E-118 898.5 35.2 474 57-558 1-491 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1.7E-76 3.6E-81 584.9 21.2 231 318-558 3-234 (254)
3 PF07002 Copine: Copine; Inte 100.0 1E-55 2.2E-60 402.3 15.1 145 370-516 1-146 (146)
4 KOG1028 Ca2+-dependent phospho 99.9 2.8E-25 6.2E-30 236.6 21.4 215 53-296 174-393 (421)
5 KOG2059 Ras GTPase-activating 99.8 7.9E-20 1.7E-24 195.1 16.3 251 49-333 7-275 (800)
6 cd01457 vWA_ORF176_type VWA OR 99.8 7E-19 1.5E-23 170.3 13.4 174 351-557 4-186 (199)
7 cd04048 C2A_Copine C2 domain f 99.8 1.5E-18 3.2E-23 154.2 14.4 112 48-166 2-114 (120)
8 cd04047 C2B_Copine C2 domain s 99.8 7.8E-18 1.7E-22 147.1 12.7 107 203-311 2-110 (110)
9 PF10138 vWA-TerF-like: vWA fo 99.7 6.9E-17 1.5E-21 153.0 15.6 170 351-556 3-172 (200)
10 cd08682 C2_Rab11-FIP_classI C2 99.7 9.7E-17 2.1E-21 143.8 13.5 113 53-194 6-125 (126)
11 cd08393 C2A_SLP-1_2 C2 domain 99.7 9.9E-17 2.2E-21 143.6 11.0 120 187-309 1-124 (125)
12 cd04016 C2_Tollip C2 domain pr 99.7 3E-16 6.5E-21 139.4 13.8 115 48-195 3-120 (121)
13 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.1E-16 8.8E-21 138.7 14.6 117 49-196 2-119 (121)
14 cd08681 C2_fungal_Inn1p-like C 99.7 2.2E-16 4.7E-21 139.7 11.6 113 49-195 3-117 (118)
15 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 4.4E-16 9.4E-21 138.9 13.7 119 50-194 3-122 (123)
16 cd04047 C2B_Copine C2 domain s 99.7 4.3E-16 9.2E-21 136.1 13.2 96 48-155 2-101 (110)
17 cd04036 C2_cPLA2 C2 domain pre 99.7 4.7E-16 1E-20 137.9 13.2 99 53-166 7-105 (119)
18 cd08376 C2B_MCTP_PRT C2 domain 99.7 1E-15 2.2E-20 135.0 14.2 97 53-166 7-103 (116)
19 cd04029 C2A_SLP-4_5 C2 domain 99.7 4.2E-16 9E-21 139.6 11.8 120 187-309 1-124 (125)
20 cd04022 C2A_MCTP_PRT_plant C2 99.7 6.6E-16 1.4E-20 138.6 12.5 116 49-194 2-123 (127)
21 cd08395 C2C_Munc13 C2 domain t 99.7 9.9E-16 2.2E-20 135.7 13.3 106 49-166 2-112 (120)
22 cd08677 C2A_Synaptotagmin-13 C 99.7 3.1E-16 6.7E-21 137.6 9.9 104 188-298 1-107 (118)
23 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.2E-15 2.5E-20 136.1 13.3 119 203-330 2-121 (123)
24 cd08381 C2B_PI3K_class_II C2 d 99.7 7.6E-16 1.7E-20 137.3 11.4 116 188-309 2-121 (122)
25 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.7E-15 3.7E-20 135.4 13.4 105 50-166 3-111 (126)
26 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.1E-15 4.6E-20 136.2 14.2 122 50-196 3-132 (133)
27 cd08393 C2A_SLP-1_2 C2 domain 99.6 7E-16 1.5E-20 138.1 10.6 106 47-164 15-124 (125)
28 cd04042 C2A_MCTP_PRT C2 domain 99.6 1.5E-15 3.1E-20 135.2 12.4 114 203-330 2-116 (121)
29 cd08375 C2_Intersectin C2 doma 99.6 2.3E-15 5E-20 136.7 13.5 91 47-154 15-106 (136)
30 cd04028 C2B_RIM1alpha C2 domai 99.6 1.6E-15 3.4E-20 138.9 12.4 122 185-312 15-139 (146)
31 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.3E-15 2.9E-20 135.9 11.4 120 187-309 2-122 (124)
32 cd04024 C2A_Synaptotagmin-like 99.6 3.8E-15 8.3E-20 133.4 13.6 114 53-194 8-126 (128)
33 cd08382 C2_Smurf-like C2 domai 99.6 3.2E-15 6.9E-20 133.5 12.8 102 49-166 2-105 (123)
34 COG5038 Ca2+-dependent lipid-b 99.6 2.8E-14 6E-19 160.8 23.0 230 43-298 432-801 (1227)
35 cd08677 C2A_Synaptotagmin-13 C 99.6 1.4E-15 3.1E-20 133.4 10.1 104 45-164 12-118 (118)
36 cd04009 C2B_Munc13-like C2 dom 99.6 2.2E-15 4.7E-20 136.5 11.5 113 187-299 2-118 (133)
37 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 3.9E-15 8.5E-20 132.5 12.8 112 53-194 7-119 (121)
38 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 5.6E-15 1.2E-19 131.5 13.8 112 53-194 7-119 (121)
39 cd08381 C2B_PI3K_class_II C2 d 99.6 2.2E-15 4.7E-20 134.4 11.0 105 47-164 13-121 (122)
40 cd04016 C2_Tollip C2 domain pr 99.6 4.5E-15 9.7E-20 131.8 13.0 113 203-331 4-119 (121)
41 cd04048 C2A_Copine C2 domain f 99.6 3E-15 6.4E-20 133.0 11.9 105 203-309 2-112 (120)
42 cd08678 C2_C21orf25-like C2 do 99.6 4.4E-15 9.6E-20 133.1 13.1 117 53-199 6-122 (126)
43 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.2E-15 4.9E-20 134.6 11.2 120 187-309 2-123 (125)
44 cd08387 C2A_Synaptotagmin-8 C2 99.6 3.3E-15 7.2E-20 133.4 12.1 105 47-165 16-123 (124)
45 cd08373 C2A_Ferlin C2 domain f 99.6 5.2E-15 1.1E-19 132.8 13.3 118 51-201 1-120 (127)
46 cd04028 C2B_RIM1alpha C2 domai 99.6 4.6E-15 9.9E-20 135.8 13.0 107 47-166 29-138 (146)
47 cd04041 C2A_fungal C2 domain f 99.6 2.2E-15 4.7E-20 132.0 10.3 100 49-165 3-107 (111)
48 cd04030 C2C_KIAA1228 C2 domain 99.6 3.1E-15 6.7E-20 134.0 11.4 122 187-309 2-126 (127)
49 cd04029 C2A_SLP-4_5 C2 domain 99.6 3.7E-15 8.1E-20 133.4 11.8 106 47-164 15-124 (125)
50 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.7E-15 8E-20 133.0 11.6 105 47-165 16-123 (124)
51 cd08682 C2_Rab11-FIP_classI C2 99.6 5.6E-15 1.2E-19 132.4 12.7 117 204-330 2-124 (126)
52 cd08387 C2A_Synaptotagmin-8 C2 99.6 3.6E-15 7.9E-20 133.1 11.4 120 187-309 2-122 (124)
53 cd04031 C2A_RIM1alpha C2 domai 99.6 3.6E-15 7.8E-20 133.1 11.1 121 187-309 2-124 (125)
54 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.1E-14 2.4E-19 128.8 14.1 114 49-195 3-117 (119)
55 cd08392 C2A_SLP-3 C2 domain fi 99.6 4.3E-15 9.4E-20 133.5 11.3 111 187-298 1-113 (128)
56 cd08391 C2A_C2C_Synaptotagmin_ 99.6 7.9E-15 1.7E-19 130.0 12.8 100 49-166 3-109 (121)
57 cd08379 C2D_MCTP_PRT_plant C2 99.6 6.7E-15 1.4E-19 131.6 12.0 114 203-329 2-125 (126)
58 cd04019 C2C_MCTP_PRT_plant C2 99.6 1.2E-14 2.7E-19 134.1 14.1 120 53-196 7-131 (150)
59 cd04031 C2A_RIM1alpha C2 domai 99.6 5.2E-15 1.1E-19 132.1 11.1 106 47-165 16-125 (125)
60 cd04027 C2B_Munc13 C2 domain s 99.6 1.3E-14 2.7E-19 130.3 13.5 123 49-193 3-126 (127)
61 cd04030 C2C_KIAA1228 C2 domain 99.6 7.7E-15 1.7E-19 131.4 11.9 108 47-164 16-126 (127)
62 cd08404 C2B_Synaptotagmin-4 C2 99.6 4.9E-15 1.1E-19 134.6 10.6 122 187-311 1-123 (136)
63 KOG1030 Predicted Ca2+-depende 99.6 3.3E-15 7.2E-20 136.3 9.3 90 49-156 8-98 (168)
64 cd08521 C2A_SLP C2 domain firs 99.6 7.7E-15 1.7E-19 130.6 11.3 120 188-308 1-122 (123)
65 cd08390 C2A_Synaptotagmin-15-1 99.6 1.2E-14 2.6E-19 129.4 12.5 106 46-165 13-122 (123)
66 cd08680 C2_Kibra C2 domain fou 99.6 6.4E-15 1.4E-19 131.5 10.5 110 44-164 11-124 (124)
67 cd08688 C2_KIAA0528-like C2 do 99.6 7.2E-15 1.6E-19 128.5 10.5 97 53-166 6-109 (110)
68 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.2E-14 2.5E-19 130.0 11.9 105 47-165 16-124 (125)
69 cd04043 C2_Munc13_fungal C2 do 99.6 3.2E-14 7E-19 127.2 14.7 100 53-166 8-110 (126)
70 cd04010 C2B_RasA3 C2 domain se 99.6 1.8E-14 4E-19 132.4 13.3 105 49-167 2-123 (148)
71 cd04040 C2D_Tricalbin-like C2 99.6 2E-14 4.4E-19 126.4 12.8 98 53-166 6-103 (115)
72 cd04044 C2A_Tricalbin-like C2 99.6 1.9E-14 4.1E-19 128.1 12.7 117 49-197 4-123 (124)
73 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 8.8E-15 1.9E-19 136.9 10.9 110 188-298 2-125 (162)
74 cd08691 C2_NEDL1-like C2 domai 99.6 2.8E-14 6.1E-19 129.5 13.8 117 53-194 8-136 (137)
75 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 2.4E-14 5.3E-19 129.3 13.3 119 204-330 3-129 (133)
76 cd04039 C2_PSD C2 domain prese 99.6 1.5E-14 3.3E-19 126.0 11.5 91 49-156 3-99 (108)
77 COG5038 Ca2+-dependent lipid-b 99.6 1.1E-13 2.4E-18 156.1 21.0 87 205-298 1044-1131(1227)
78 cd08680 C2_Kibra C2 domain fou 99.6 9.4E-15 2E-19 130.4 10.2 108 189-298 2-112 (124)
79 cd08377 C2C_MCTP_PRT C2 domain 99.6 2.3E-14 4.9E-19 126.8 12.6 112 203-330 3-115 (119)
80 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 3.2E-14 7E-19 126.6 13.2 114 204-330 3-118 (121)
81 cd04046 C2_Calpain C2 domain p 99.6 3.6E-14 7.7E-19 127.3 13.5 116 47-194 3-119 (126)
82 cd08378 C2B_MCTP_PRT_plant C2 99.6 2E-14 4.3E-19 128.0 11.7 106 53-194 7-117 (121)
83 cd08388 C2A_Synaptotagmin-4-11 99.6 2.4E-14 5.2E-19 128.7 12.2 106 46-165 15-127 (128)
84 cd08681 C2_fungal_Inn1p-like C 99.6 2.1E-14 4.5E-19 127.0 11.6 111 203-330 3-115 (118)
85 cd08406 C2B_Synaptotagmin-12 C 99.6 4.7E-15 1E-19 134.6 7.6 121 188-311 2-123 (136)
86 cd04022 C2A_MCTP_PRT_plant C2 99.6 2.2E-14 4.9E-19 128.7 11.9 117 203-330 2-122 (127)
87 cd08390 C2A_Synaptotagmin-15-1 99.6 1.8E-14 3.8E-19 128.4 11.0 119 188-309 1-121 (123)
88 cd08521 C2A_SLP C2 domain firs 99.6 2.2E-14 4.7E-19 127.7 11.0 106 47-164 14-123 (123)
89 cd08395 C2C_Munc13 C2 domain t 99.6 2.5E-14 5.4E-19 126.8 11.1 96 203-299 2-100 (120)
90 cd08678 C2_C21orf25-like C2 do 99.6 4.6E-14 1E-18 126.5 13.0 115 203-330 1-116 (126)
91 cd04019 C2C_MCTP_PRT_plant C2 99.6 5.5E-14 1.2E-18 129.8 13.8 119 203-330 2-128 (150)
92 cd08388 C2A_Synaptotagmin-4-11 99.6 2.9E-14 6.2E-19 128.3 11.6 107 187-298 2-113 (128)
93 cd08685 C2_RGS-like C2 domain 99.6 2.4E-14 5.3E-19 127.0 11.0 106 47-164 12-119 (119)
94 cd04015 C2_plant_PLD C2 domain 99.6 7.5E-14 1.6E-18 130.1 14.6 100 49-166 9-139 (158)
95 cd08400 C2_Ras_p21A1 C2 domain 99.6 9.1E-14 2E-18 124.6 14.4 118 48-197 5-123 (126)
96 cd04017 C2D_Ferlin C2 domain f 99.5 6.2E-14 1.3E-18 127.2 13.4 117 49-198 3-133 (135)
97 cd08375 C2_Intersectin C2 doma 99.5 4.7E-14 1E-18 128.1 12.5 89 203-299 17-106 (136)
98 cd08392 C2A_SLP-3 C2 domain fi 99.5 2.9E-14 6.3E-19 128.2 11.0 107 46-164 14-127 (128)
99 cd04036 C2_cPLA2 C2 domain pre 99.5 2.4E-14 5.2E-19 126.9 10.4 111 204-330 3-114 (119)
100 cd08407 C2B_Synaptotagmin-13 C 99.5 2.1E-14 4.5E-19 130.4 10.1 107 187-296 1-112 (138)
101 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.2E-14 2.5E-19 132.1 8.3 122 187-311 1-123 (136)
102 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.2E-14 2.6E-19 131.4 8.2 119 190-311 2-121 (133)
103 cd04054 C2A_Rasal1_RasA4 C2 do 99.5 7.7E-14 1.7E-18 124.2 13.3 115 203-330 2-118 (121)
104 KOG0696 Serine/threonine prote 99.5 4.7E-15 1E-19 151.1 6.1 112 183-298 164-276 (683)
105 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.3E-14 2.9E-19 131.4 8.1 121 188-311 1-122 (134)
106 cd08685 C2_RGS-like C2 domain 99.5 4E-14 8.6E-19 125.7 10.9 106 188-298 1-108 (119)
107 cd08376 C2B_MCTP_PRT C2 domain 99.5 6.1E-14 1.3E-18 123.6 12.1 108 204-330 3-111 (116)
108 cd04046 C2_Calpain C2 domain p 99.5 7.9E-14 1.7E-18 125.0 12.4 112 204-330 6-118 (126)
109 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 4.6E-14 1E-18 132.0 11.0 109 46-166 26-138 (162)
110 KOG1030 Predicted Ca2+-depende 99.5 2.9E-14 6.3E-19 130.1 9.3 87 204-299 9-96 (168)
111 cd04032 C2_Perforin C2 domain 99.5 3.5E-14 7.5E-19 127.1 9.7 90 47-154 28-119 (127)
112 cd04024 C2A_Synaptotagmin-like 99.5 1.1E-13 2.4E-18 124.0 12.8 116 204-330 4-125 (128)
113 cd08389 C2A_Synaptotagmin-14_1 99.5 4.4E-14 9.5E-19 126.3 9.9 119 187-309 2-122 (124)
114 cd04021 C2_E3_ubiquitin_ligase 99.5 1.5E-13 3.2E-18 123.1 13.4 102 47-166 2-108 (125)
115 cd08405 C2B_Synaptotagmin-7 C2 99.5 4.5E-14 9.8E-19 128.2 9.9 122 187-311 1-123 (136)
116 cd08384 C2B_Rabphilin_Doc2 C2 99.5 7.9E-14 1.7E-18 126.1 11.4 107 46-166 12-121 (133)
117 cd04051 C2_SRC2_like C2 domain 99.5 8.4E-14 1.8E-18 124.4 11.2 102 49-166 2-114 (125)
118 cd08688 C2_KIAA0528-like C2 do 99.5 8.4E-14 1.8E-18 121.7 10.9 102 204-311 2-109 (110)
119 cd08676 C2A_Munc13-like C2 dom 99.5 1.1E-13 2.3E-18 127.9 11.8 106 43-164 24-153 (153)
120 cd04041 C2A_fungal C2 domain f 99.5 8.1E-14 1.7E-18 122.1 10.5 93 203-298 3-98 (111)
121 cd08410 C2B_Synaptotagmin-17 C 99.5 3E-14 6.5E-19 129.3 7.9 107 188-297 1-110 (135)
122 cd04050 C2B_Synaptotagmin-like 99.5 8.9E-14 1.9E-18 120.5 10.3 94 53-166 7-102 (105)
123 cd08373 C2A_Ferlin C2 domain f 99.5 1.2E-13 2.6E-18 123.9 11.3 110 206-329 1-111 (127)
124 cd04009 C2B_Munc13-like C2 dom 99.5 1E-13 2.2E-18 125.4 11.0 98 47-155 16-119 (133)
125 cd08382 C2_Smurf-like C2 domai 99.5 1.9E-13 4.1E-18 122.0 12.4 115 204-330 3-121 (123)
126 cd04039 C2_PSD C2 domain prese 99.5 1.6E-13 3.5E-18 119.6 11.4 90 203-299 3-97 (108)
127 cd04026 C2_PKC_alpha_gamma C2 99.5 2.1E-13 4.5E-18 122.9 12.6 122 187-313 1-123 (131)
128 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.4E-13 3.1E-18 122.6 11.4 105 46-163 14-122 (123)
129 cd08690 C2_Freud-1 C2 domain f 99.5 2.8E-13 6E-18 125.1 13.3 107 49-166 4-121 (155)
130 cd08691 C2_NEDL1-like C2 domai 99.5 3E-13 6.5E-18 122.8 13.3 90 204-299 4-106 (137)
131 cd08389 C2A_Synaptotagmin-14_1 99.5 1.4E-13 3.1E-18 123.0 10.8 105 46-165 15-123 (124)
132 cd04049 C2_putative_Elicitor-r 99.5 2E-13 4.3E-18 121.9 11.7 101 49-166 3-108 (124)
133 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.8E-13 3.9E-18 122.0 11.4 110 187-298 1-112 (123)
134 cd08408 C2B_Synaptotagmin-14_1 99.5 1.4E-13 3E-18 125.4 10.7 110 188-297 2-112 (138)
135 cd04037 C2E_Ferlin C2 domain f 99.5 1.6E-13 3.5E-18 122.7 10.8 87 53-154 7-93 (124)
136 cd08675 C2B_RasGAP C2 domain s 99.5 1.8E-13 4E-18 124.5 11.3 100 53-166 6-120 (137)
137 cd04014 C2_PKC_epsilon C2 doma 99.5 5E-13 1.1E-17 120.7 14.0 101 48-166 5-118 (132)
138 cd08404 C2B_Synaptotagmin-4 C2 99.5 4.3E-14 9.2E-19 128.4 7.1 106 47-166 15-123 (136)
139 cd04027 C2B_Munc13 C2 domain s 99.5 2.7E-13 5.7E-18 121.8 12.1 112 203-330 3-126 (127)
140 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.3E-13 2.8E-18 125.2 9.6 110 42-165 10-122 (136)
141 cd04026 C2_PKC_alpha_gamma C2 99.5 2.9E-13 6.3E-18 122.0 11.7 107 47-166 13-121 (131)
142 cd04018 C2C_Ferlin C2 domain t 99.5 3.1E-13 6.8E-18 124.6 11.8 90 50-156 3-108 (151)
143 cd04038 C2_ArfGAP C2 domain pr 99.5 2.9E-13 6.3E-18 124.1 11.5 89 49-156 4-93 (145)
144 cd08391 C2A_C2C_Synaptotagmin_ 99.5 5.5E-13 1.2E-17 118.2 12.2 108 204-330 4-118 (121)
145 cd04045 C2C_Tricalbin-like C2 99.5 5.3E-13 1.2E-17 118.6 12.0 100 49-166 3-103 (120)
146 cd04010 C2B_RasA3 C2 domain se 99.5 4.1E-13 8.8E-18 123.5 11.4 108 203-313 2-124 (148)
147 cd08410 C2B_Synaptotagmin-17 C 99.5 2.8E-13 6.1E-18 122.9 10.1 92 46-149 13-107 (135)
148 cd08406 C2B_Synaptotagmin-12 C 99.5 2.9E-13 6.3E-18 122.8 9.7 94 45-150 13-109 (136)
149 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.6E-13 5.6E-18 122.9 9.3 105 46-164 13-120 (134)
150 KOG1013 Synaptic vesicle prote 99.4 4E-14 8.8E-19 140.5 3.8 222 53-297 100-329 (362)
151 cd04017 C2D_Ferlin C2 domain f 99.4 8.9E-13 1.9E-17 119.6 12.3 117 203-334 3-131 (135)
152 cd04045 C2C_Tricalbin-like C2 99.4 9.5E-13 2.1E-17 117.0 12.1 101 204-313 4-105 (120)
153 cd00276 C2B_Synaptotagmin C2 d 99.4 2.7E-13 5.9E-18 122.3 8.7 122 188-312 1-123 (134)
154 cd00275 C2_PLC_like C2 domain 99.4 3E-12 6.5E-17 114.5 14.9 120 48-195 3-126 (128)
155 cd04040 C2D_Tricalbin-like C2 99.4 9.4E-13 2E-17 115.8 11.2 99 205-310 3-102 (115)
156 cd08408 C2B_Synaptotagmin-14_1 99.4 7.3E-13 1.6E-17 120.7 10.6 98 43-151 11-111 (138)
157 cd08405 C2B_Synaptotagmin-7 C2 99.4 5.4E-13 1.2E-17 121.1 9.7 105 47-165 15-122 (136)
158 cd00276 C2B_Synaptotagmin C2 d 99.4 3E-13 6.5E-18 122.1 7.9 106 47-166 14-122 (134)
159 cd08407 C2B_Synaptotagmin-13 C 99.4 5.6E-13 1.2E-17 121.1 9.4 94 46-151 14-112 (138)
160 cd04044 C2A_Tricalbin-like C2 99.4 1.4E-12 3E-17 116.0 11.7 114 203-330 4-119 (124)
161 cd04032 C2_Perforin C2 domain 99.4 5.6E-13 1.2E-17 119.4 8.8 88 203-298 30-118 (127)
162 cd04015 C2_plant_PLD C2 domain 99.4 2.2E-12 4.9E-17 120.2 13.2 114 203-329 9-153 (158)
163 cd04011 C2B_Ferlin C2 domain s 99.4 1.2E-12 2.5E-17 114.7 10.4 97 49-166 6-110 (111)
164 cd04043 C2_Munc13_fungal C2 do 99.4 3.1E-12 6.8E-17 114.4 13.4 91 203-298 3-94 (126)
165 cd08409 C2B_Synaptotagmin-15 C 99.4 1.3E-12 2.8E-17 118.9 10.8 107 187-297 1-110 (137)
166 cd04018 C2C_Ferlin C2 domain t 99.4 1.2E-12 2.6E-17 120.7 10.6 90 203-299 2-106 (151)
167 cd08378 C2B_MCTP_PRT_plant C2 99.4 1.4E-12 3.1E-17 116.1 10.5 108 203-329 2-115 (121)
168 cd08676 C2A_Munc13-like C2 dom 99.4 1.6E-12 3.4E-17 120.1 10.8 102 201-309 28-153 (153)
169 cd04037 C2E_Ferlin C2 domain f 99.4 1.8E-12 3.9E-17 115.9 10.3 89 204-298 3-92 (124)
170 cd04051 C2_SRC2_like C2 domain 99.4 2.1E-12 4.6E-17 115.4 10.6 114 204-329 3-125 (125)
171 cd08692 C2B_Tac2-N C2 domain s 99.4 2.2E-12 4.7E-17 116.0 10.6 107 189-297 2-110 (135)
172 cd04038 C2_ArfGAP C2 domain pr 99.4 2.4E-12 5.2E-17 118.1 11.1 87 203-299 4-91 (145)
173 cd08400 C2_Ras_p21A1 C2 domain 99.4 4.5E-12 9.7E-17 113.7 12.5 114 202-330 5-119 (126)
174 cd08690 C2_Freud-1 C2 domain f 99.4 4.2E-12 9.1E-17 117.3 12.2 121 207-336 10-138 (155)
175 cd04052 C2B_Tricalbin-like C2 99.4 4E-12 8.8E-17 111.3 11.5 100 63-197 9-109 (111)
176 cd08675 C2B_RasGAP C2 domain s 99.4 4E-12 8.6E-17 115.7 11.7 105 204-311 2-120 (137)
177 cd04050 C2B_Synaptotagmin-like 99.4 3.1E-12 6.8E-17 110.8 10.5 97 203-310 2-101 (105)
178 KOG0696 Serine/threonine prote 99.4 6.6E-13 1.4E-17 135.6 6.4 100 54-166 188-288 (683)
179 cd08394 C2A_Munc13 C2 domain f 99.4 6.2E-12 1.3E-16 111.6 11.8 96 48-166 3-101 (127)
180 cd04021 C2_E3_ubiquitin_ligase 99.4 7.9E-12 1.7E-16 111.9 12.6 87 203-299 4-91 (125)
181 cd04049 C2_putative_Elicitor-r 99.4 6.4E-12 1.4E-16 112.1 11.9 102 203-310 3-107 (124)
182 cd08409 C2B_Synaptotagmin-15 C 99.3 1.7E-12 3.8E-17 118.0 7.4 106 46-164 14-122 (137)
183 PLN03008 Phospholipase D delta 99.3 1.5E-11 3.3E-16 137.1 15.8 151 64-252 74-225 (868)
184 cd04014 C2_PKC_epsilon C2 doma 99.3 1.9E-11 4.1E-16 110.4 12.5 107 203-330 6-125 (132)
185 cd08686 C2_ABR C2 domain in th 99.3 1.7E-11 3.7E-16 107.4 10.9 86 53-150 6-91 (118)
186 KOG1011 Neurotransmitter relea 99.3 2.2E-12 4.7E-17 136.6 5.7 119 39-166 287-406 (1283)
187 cd08692 C2B_Tac2-N C2 domain s 99.3 2.1E-11 4.7E-16 109.6 10.5 98 43-152 10-110 (135)
188 cd04011 C2B_Ferlin C2 domain s 99.3 1.2E-11 2.6E-16 108.2 8.6 87 202-298 5-94 (111)
189 KOG1028 Ca2+-dependent phospho 99.3 3.7E-11 8.1E-16 128.6 13.8 161 185-362 151-314 (421)
190 cd04013 C2_SynGAP_like C2 doma 99.3 9.9E-11 2.1E-15 107.1 14.1 96 53-166 18-113 (146)
191 cd08383 C2A_RasGAP C2 domain ( 99.2 1.3E-10 2.8E-15 102.3 13.3 107 53-194 7-115 (117)
192 cd08394 C2A_Munc13 C2 domain f 99.2 7.2E-11 1.6E-15 104.8 11.1 95 202-310 3-100 (127)
193 PF00168 C2: C2 domain; Inter 99.2 7.3E-11 1.6E-15 96.8 10.1 83 50-146 2-85 (85)
194 cd08686 C2_ABR C2 domain in th 99.2 5.8E-11 1.3E-15 104.0 9.8 82 204-295 2-91 (118)
195 cd04052 C2B_Tricalbin-like C2 99.2 1.2E-10 2.6E-15 102.0 11.6 95 218-330 9-105 (111)
196 KOG1327 Copine [Signal transdu 99.2 3.1E-12 6.6E-17 136.3 1.0 287 39-360 129-457 (529)
197 cd00275 C2_PLC_like C2 domain 99.2 2.4E-10 5.1E-15 102.2 12.8 105 203-313 4-112 (128)
198 cd08383 C2A_RasGAP C2 domain ( 99.1 3.9E-10 8.4E-15 99.2 10.9 111 204-330 3-114 (117)
199 PLN03008 Phospholipase D delta 99.1 2.8E-10 6.1E-15 127.2 11.9 99 219-330 74-173 (868)
200 cd04013 C2_SynGAP_like C2 doma 99.1 1.5E-09 3.3E-14 99.3 12.8 102 201-315 11-117 (146)
201 PLN03200 cellulose synthase-in 99.0 5.3E-10 1.1E-14 135.7 10.8 102 201-311 1980-2082(2102)
202 PF00168 C2: C2 domain; Inter 99.0 1.4E-09 3.1E-14 89.1 8.4 83 204-291 2-85 (85)
203 KOG1326 Membrane-associated pr 99.0 4.7E-10 1E-14 125.0 5.5 85 206-296 618-703 (1105)
204 cd00030 C2 C2 domain. The C2 d 99.0 4.6E-09 9.9E-14 87.7 10.2 96 53-164 6-102 (102)
205 PLN03200 cellulose synthase-in 99.0 1.6E-09 3.6E-14 131.5 9.9 99 49-166 1982-2082(2102)
206 smart00239 C2 Protein kinase C 98.9 9E-09 2E-13 86.4 11.0 90 53-156 7-96 (101)
207 cd08374 C2F_Ferlin C2 domain s 98.9 8.5E-09 1.8E-13 92.7 9.5 89 53-155 7-124 (133)
208 cd08374 C2F_Ferlin C2 domain s 98.8 1.4E-08 3E-13 91.4 8.9 93 203-298 2-122 (133)
209 PLN02223 phosphoinositide phos 98.7 1.2E-07 2.7E-12 102.4 14.4 102 49-166 411-519 (537)
210 smart00239 C2 Protein kinase C 98.7 1.3E-07 2.8E-12 79.3 10.6 89 205-298 4-93 (101)
211 cd00030 C2 C2 domain. The C2 d 98.7 1.6E-07 3.5E-12 78.2 10.8 87 205-298 3-90 (102)
212 KOG1328 Synaptic vesicle prote 98.7 7.3E-09 1.6E-13 111.9 1.8 128 53-194 121-298 (1103)
213 PLN02952 phosphoinositide phos 98.7 3E-07 6.5E-12 101.3 14.2 103 48-166 471-581 (599)
214 KOG1326 Membrane-associated pr 98.6 6.5E-08 1.4E-12 108.3 6.0 90 47-151 613-703 (1105)
215 PLN02270 phospholipase D alpha 98.5 1.5E-06 3.3E-11 97.7 15.7 166 49-253 10-196 (808)
216 PLN02230 phosphoinositide phos 98.5 1.1E-06 2.5E-11 96.7 13.8 103 48-166 470-580 (598)
217 PLN02222 phosphoinositide phos 98.5 1.6E-06 3.4E-11 95.4 14.3 103 48-166 453-563 (581)
218 KOG1011 Neurotransmitter relea 98.4 2.4E-07 5.2E-12 99.1 5.9 112 203-330 297-420 (1283)
219 PLN02228 Phosphoinositide phos 98.4 3E-06 6.4E-11 93.1 14.3 103 48-166 432-543 (567)
220 KOG2059 Ras GTPase-activating 98.3 1.2E-06 2.6E-11 95.3 7.9 112 203-330 7-121 (800)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.3 2.8E-06 6E-11 72.5 8.4 80 53-154 6-88 (109)
222 smart00327 VWA von Willebrand 98.3 1.1E-05 2.3E-10 75.3 13.3 152 350-530 2-158 (177)
223 PLN02223 phosphoinositide phos 98.3 6.7E-06 1.4E-10 89.1 13.2 105 203-313 411-521 (537)
224 PLN02952 phosphoinositide phos 98.3 6.6E-06 1.4E-10 90.9 12.2 106 202-313 471-583 (599)
225 PLN02228 Phosphoinositide phos 98.2 1.1E-05 2.4E-10 88.6 12.9 126 203-340 433-566 (567)
226 KOG1031 Predicted Ca2+-depende 98.2 4.9E-06 1.1E-10 88.3 8.8 88 205-298 7-97 (1169)
227 cd01471 vWA_micronemal_protein 98.2 2.1E-05 4.5E-10 75.0 12.4 176 350-557 1-180 (186)
228 KOG1264 Phospholipase C [Lipid 98.2 1.2E-05 2.5E-10 88.6 11.4 99 53-166 1072-1171(1267)
229 KOG1328 Synaptic vesicle prote 98.1 1.1E-06 2.5E-11 95.3 2.6 112 187-298 933-1048(1103)
230 KOG0169 Phosphoinositide-speci 98.1 1.3E-05 2.8E-10 88.8 10.5 102 49-166 618-726 (746)
231 cd01461 vWA_interalpha_trypsin 98.1 8.1E-05 1.8E-09 69.5 14.4 149 350-530 3-152 (171)
232 cd01463 vWA_VGCC_like VWA Volt 98.1 9.9E-05 2.1E-09 70.8 15.0 157 348-529 12-178 (190)
233 PLN02230 phosphoinositide phos 98.1 1.9E-05 4.1E-10 87.2 10.4 105 203-313 471-582 (598)
234 PLN02222 phosphoinositide phos 98.0 6.8E-05 1.5E-09 82.7 13.2 105 203-313 454-565 (581)
235 cd08689 C2_fungal_Pkc1p C2 dom 98.0 4.1E-05 9E-10 65.4 8.3 82 205-299 3-88 (109)
236 cd01450 vWFA_subfamily_ECM Von 97.9 8.3E-05 1.8E-09 68.2 11.1 147 351-528 2-153 (161)
237 cd00198 vWFA Von Willebrand fa 97.9 0.00012 2.6E-09 66.3 11.8 146 351-529 2-154 (161)
238 KOG0169 Phosphoinositide-speci 97.9 5.6E-05 1.2E-09 83.8 10.5 105 203-313 618-728 (746)
239 cd01465 vWA_subgroup VWA subgr 97.9 0.00029 6.3E-09 65.7 13.5 146 350-528 1-151 (170)
240 PLN02270 phospholipase D alpha 97.9 0.00012 2.6E-09 82.7 12.4 87 220-315 45-133 (808)
241 KOG0905 Phosphoinositide 3-kin 97.8 2E-05 4.2E-10 90.0 5.4 121 185-310 1510-1634(1639)
242 cd01466 vWA_C3HC4_type VWA C3H 97.8 0.00039 8.6E-09 64.4 12.6 145 350-529 1-146 (155)
243 cd01464 vWA_subfamily VWA subf 97.8 0.00015 3.3E-09 68.6 9.8 149 349-530 3-161 (176)
244 cd01454 vWA_norD_type norD typ 97.7 0.0009 1.9E-08 63.1 13.6 142 351-519 2-154 (174)
245 cd01482 vWA_collagen_alphaI-XI 97.6 0.00066 1.4E-08 63.4 11.0 145 351-529 2-152 (164)
246 cd01476 VWA_integrin_invertebr 97.6 0.00055 1.2E-08 63.6 10.3 146 350-527 1-154 (163)
247 cd01456 vWA_ywmD_type VWA ywmD 97.6 0.00095 2.1E-08 64.8 12.3 161 348-530 19-192 (206)
248 PF13519 VWA_2: von Willebrand 97.5 0.0017 3.6E-08 60.0 13.4 146 351-527 1-148 (172)
249 cd01480 vWA_collagen_alpha_1-V 97.5 0.0013 2.9E-08 62.8 12.2 150 348-529 1-162 (186)
250 KOG1031 Predicted Ca2+-depende 97.5 0.00011 2.3E-09 78.5 4.9 88 49-153 5-97 (1169)
251 KOG1013 Synaptic vesicle prote 97.4 9.3E-05 2E-09 74.6 3.6 85 53-149 240-326 (362)
252 KOG0905 Phosphoinositide 3-kin 97.4 9.4E-05 2E-09 84.6 3.8 101 54-166 1532-1635(1639)
253 PTZ00441 sporozoite surface pr 97.4 0.0035 7.6E-08 68.9 14.9 154 349-527 42-199 (576)
254 PLN02352 phospholipase D epsil 97.4 0.0018 3.9E-08 73.3 12.8 169 67-280 36-212 (758)
255 cd01470 vWA_complement_factors 97.4 0.0022 4.7E-08 61.8 11.8 152 350-530 1-178 (198)
256 TIGR03788 marine_srt_targ mari 97.3 0.0032 6.9E-08 71.2 14.7 147 349-527 271-418 (596)
257 KOG1264 Phospholipase C [Lipid 97.3 0.0011 2.4E-08 73.6 9.9 93 204-299 1068-1162(1267)
258 cd01473 vWA_CTRP CTRP for CS 97.2 0.0082 1.8E-07 57.8 14.2 154 351-529 2-161 (192)
259 cd01467 vWA_BatA_type VWA BatA 97.2 0.0078 1.7E-07 56.7 13.2 151 350-529 3-166 (180)
260 cd01475 vWA_Matrilin VWA_Matri 97.2 0.0034 7.4E-08 61.8 11.1 146 350-529 3-157 (224)
261 cd01472 vWA_collagen von Wille 97.2 0.0031 6.8E-08 58.7 10.3 147 351-530 2-153 (164)
262 cd01453 vWA_transcription_fact 97.2 0.0097 2.1E-07 56.8 13.7 150 348-527 2-155 (183)
263 cd01469 vWA_integrins_alpha_su 97.1 0.0038 8.1E-08 59.2 10.8 147 350-527 1-157 (177)
264 cd01474 vWA_ATR ATR (Anthrax T 97.1 0.0043 9.4E-08 59.1 11.2 149 349-529 4-156 (185)
265 cd01477 vWA_F09G8-8_type VWA F 97.1 0.014 3E-07 56.2 14.2 154 347-527 17-182 (193)
266 cd01451 vWA_Magnesium_chelatas 97.1 0.014 3E-07 55.3 13.9 144 352-527 3-154 (178)
267 cd01460 vWA_midasin VWA_Midasi 97.1 0.0069 1.5E-07 61.1 12.3 142 349-518 60-205 (266)
268 cd01462 VWA_YIEM_type VWA YIEM 96.9 0.016 3.5E-07 53.0 12.6 133 351-518 2-135 (152)
269 PRK13685 hypothetical protein; 96.8 0.017 3.7E-07 60.3 13.2 141 350-518 89-239 (326)
270 PF13768 VWA_3: von Willebrand 96.8 0.02 4.3E-07 52.6 12.3 143 351-528 2-147 (155)
271 cd01481 vWA_collagen_alpha3-VI 96.6 0.024 5.1E-07 53.2 11.4 144 352-529 3-155 (165)
272 cd01452 VWA_26S_proteasome_sub 96.6 0.053 1.2E-06 51.9 13.6 148 352-527 6-158 (187)
273 PF00092 VWA: von Willebrand f 96.6 0.022 4.8E-07 53.0 10.8 150 351-529 1-155 (178)
274 PLN02964 phosphatidylserine de 96.5 0.0029 6.3E-08 71.0 5.4 72 67-154 68-139 (644)
275 cd01458 vWA_ku Ku70/Ku80 N-ter 96.5 0.072 1.5E-06 52.2 14.4 153 351-519 3-174 (218)
276 PLN02964 phosphatidylserine de 96.5 0.0036 7.9E-08 70.2 5.5 68 222-298 68-138 (644)
277 PF09967 DUF2201: VWA-like dom 96.3 0.0063 1.4E-07 54.5 4.9 109 352-514 1-111 (126)
278 cd08683 C2_C2cd3 C2 domain fou 96.0 0.023 5E-07 50.4 7.0 93 68-164 34-143 (143)
279 TIGR03436 acidobact_VWFA VWFA- 95.9 0.14 3.1E-06 52.5 13.5 139 348-517 52-204 (296)
280 TIGR02442 Cob-chelat-sub cobal 95.9 0.15 3.2E-06 58.2 14.7 149 348-527 464-622 (633)
281 TIGR02031 BchD-ChlD magnesium 95.5 0.23 5.1E-06 56.1 14.5 148 346-527 404-570 (589)
282 PRK13406 bchD magnesium chelat 95.5 0.23 4.9E-06 55.9 14.2 148 346-527 398-557 (584)
283 KOG3837 Uncharacterized conser 95.0 0.041 8.9E-07 57.4 5.7 109 47-166 367-487 (523)
284 PLN02352 phospholipase D epsil 95.0 0.11 2.4E-06 59.2 9.7 77 223-314 37-115 (758)
285 KOG2060 Rab3 effector RIM1 and 94.4 0.047 1E-06 56.5 4.4 104 49-166 273-379 (405)
286 cd01455 vWA_F11C1-5a_type Von 94.3 0.51 1.1E-05 45.2 11.0 158 351-527 2-162 (191)
287 PRK10997 yieM hypothetical pro 93.5 1.4 3.1E-05 48.2 13.9 142 349-527 323-468 (487)
288 KOG2060 Rab3 effector RIM1 and 92.5 0.11 2.4E-06 53.8 3.4 111 200-313 268-381 (405)
289 TIGR00868 hCaCC calcium-activa 91.4 3.6 7.9E-05 48.2 14.5 154 343-530 299-453 (863)
290 KOG1265 Phospholipase C [Lipid 90.9 0.32 6.9E-06 55.4 5.1 88 49-155 705-797 (1189)
291 cd08684 C2A_Tac2-N C2 domain f 90.8 0.33 7.2E-06 40.3 3.9 84 53-153 6-93 (103)
292 PF14429 DOCK-C2: C2 domain in 90.2 4.8 0.0001 38.3 12.0 63 81-151 56-120 (184)
293 cd08683 C2_C2cd3 C2 domain fou 90.1 1.2 2.6E-05 39.7 7.0 75 222-298 33-131 (143)
294 KOG3837 Uncharacterized conser 88.6 0.51 1.1E-05 49.6 4.2 115 207-329 373-498 (523)
295 cd08397 C2_PI3K_class_III C2 d 88.3 1.3 2.8E-05 41.3 6.4 74 221-296 29-106 (159)
296 PF12416 DUF3668: Cep120 prote 88.1 2.2 4.8E-05 44.6 8.7 101 204-313 3-115 (340)
297 cd08397 C2_PI3K_class_III C2 d 86.4 2.5 5.3E-05 39.4 7.1 76 65-151 28-106 (159)
298 KOG4428 Inositol-polyphosphate 86.1 1.8 4E-05 47.7 6.8 76 46-125 34-111 (813)
299 PF05762 VWA_CoxE: VWA domain 85.5 7 0.00015 38.4 10.3 115 350-501 58-173 (222)
300 cd08695 C2_Dock-B C2 domains f 85.4 8.1 0.00018 37.0 10.1 42 83-124 52-95 (189)
301 PF11775 CobT_C: Cobalamin bio 85.3 2.5 5.4E-05 41.3 6.7 54 463-518 120-188 (219)
302 COG1240 ChlD Mg-chelatase subu 84.2 5.7 0.00012 39.7 8.7 136 353-519 82-224 (261)
303 cd08697 C2_Dock-D C2 domains f 83.9 12 0.00025 35.8 10.4 73 47-124 24-98 (185)
304 cd08696 C2_Dock-C C2 domains f 82.6 12 0.00026 35.6 9.9 45 81-125 51-97 (179)
305 PF15627 CEP76-C2: CEP76 C2 do 80.6 15 0.00032 34.1 9.5 108 65-199 30-152 (156)
306 cd08380 C2_PI3K_like C2 domain 80.5 6.6 0.00014 36.1 7.4 77 66-151 27-106 (156)
307 cd08684 C2A_Tac2-N C2 domain f 79.9 4.7 0.0001 33.7 5.3 85 206-297 4-92 (103)
308 cd08694 C2_Dock-A C2 domains f 79.8 18 0.00039 34.9 10.1 71 47-124 23-95 (196)
309 PF10358 NT-C2: N-terminal C2 79.2 47 0.001 29.7 13.7 71 85-166 39-120 (143)
310 PF00792 PI3K_C2: Phosphoinosi 76.1 15 0.00032 33.3 8.2 57 85-152 21-85 (142)
311 cd08398 C2_PI3K_class_I_alpha 75.9 13 0.00027 34.7 7.7 89 203-297 10-106 (158)
312 cd08679 C2_DOCK180_related C2 75.2 23 0.00049 33.5 9.5 61 85-151 53-115 (178)
313 PF12416 DUF3668: Cep120 prote 75.0 15 0.00033 38.5 8.9 98 50-166 3-113 (340)
314 cd08398 C2_PI3K_class_I_alpha 74.6 19 0.00041 33.5 8.5 94 47-151 8-105 (158)
315 cd08380 C2_PI3K_like C2 domain 73.1 11 0.00024 34.6 6.7 74 222-297 28-107 (156)
316 cd08399 C2_PI3K_class_I_gamma 73.0 22 0.00047 33.8 8.6 77 47-124 10-89 (178)
317 cd08693 C2_PI3K_class_I_beta_d 72.9 15 0.00033 34.6 7.7 90 203-296 10-119 (173)
318 cd08693 C2_PI3K_class_I_beta_d 72.0 18 0.0004 34.1 8.0 102 48-151 9-119 (173)
319 PF00792 PI3K_C2: Phosphoinosi 69.2 16 0.00035 33.1 6.7 58 240-298 21-86 (142)
320 COG2425 Uncharacterized protei 69.1 16 0.00035 39.5 7.6 128 350-513 273-404 (437)
321 PF04056 Ssl1: Ssl1-like; Int 67.1 72 0.0016 30.7 10.9 122 379-517 14-140 (193)
322 cd04012 C2A_PI3K_class_II C2 d 65.5 24 0.00053 33.1 7.3 103 47-151 8-118 (171)
323 cd08399 C2_PI3K_class_I_gamma 65.1 33 0.00072 32.6 8.1 54 224-279 32-88 (178)
324 COG4548 NorD Nitric oxide redu 63.8 14 0.00031 40.5 5.9 156 348-530 445-613 (637)
325 KOG1265 Phospholipase C [Lipid 63.0 10 0.00022 43.9 4.8 87 203-298 705-795 (1189)
326 PF03731 Ku_N: Ku70/Ku80 N-ter 62.6 50 0.0011 32.0 9.3 157 352-519 2-176 (224)
327 TIGR01651 CobT cobaltochelatas 59.5 22 0.00047 39.9 6.5 154 346-518 389-568 (600)
328 cd08687 C2_PKN-like C2 domain 56.3 35 0.00075 28.8 5.6 66 65-152 7-72 (98)
329 PF14909 SPATA6: Spermatogenes 56.1 90 0.0019 28.4 8.7 87 49-153 2-100 (140)
330 PF14429 DOCK-C2: C2 domain in 55.9 28 0.00061 33.0 6.0 60 237-296 57-120 (184)
331 cd04012 C2A_PI3K_class_II C2 d 53.9 38 0.00082 31.8 6.4 91 205-297 12-119 (171)
332 KOG1202 Animal-type fatty acid 49.8 45 0.00098 40.4 7.2 93 383-503 2135-2232(2376)
333 COG4245 TerY Uncharacterized p 48.8 69 0.0015 30.6 7.1 83 447-529 71-161 (207)
334 PF07162 B9-C2: Ciliary basal 46.5 1.5E+02 0.0032 27.6 9.2 75 65-151 15-103 (168)
335 smart00142 PI3K_C2 Phosphoinos 45.1 1.1E+02 0.0024 25.8 7.4 71 54-124 19-92 (100)
336 PF15627 CEP76-C2: CEP76 C2 do 39.8 3.1E+02 0.0068 25.4 10.1 75 220-298 30-116 (156)
337 COG4822 CbiK Cobalamin biosynt 35.6 1.1E+02 0.0024 29.9 6.4 124 381-523 118-248 (265)
338 PF11618 DUF3250: Protein of u 35.6 2.4E+02 0.0051 24.4 7.9 61 84-157 11-78 (107)
339 PF15625 CC2D2AN-C2: CC2D2A N- 34.9 2E+02 0.0043 26.9 8.0 69 66-152 36-106 (168)
340 KOG2807 RNA polymerase II tran 33.5 1.8E+02 0.004 30.1 7.8 141 344-516 55-202 (378)
341 cd08695 C2_Dock-B C2 domains f 33.2 91 0.002 29.9 5.4 55 238-294 52-111 (189)
342 TIGR02493 PFLA pyruvate format 33.0 2.3E+02 0.0049 27.5 8.6 69 447-526 67-137 (235)
343 cd08679 C2_DOCK180_related C2 32.9 1.2E+02 0.0025 28.6 6.2 57 239-296 53-115 (178)
344 cd08697 C2_Dock-D C2 domains f 32.8 2E+02 0.0043 27.5 7.6 58 237-296 54-123 (185)
345 smart00142 PI3K_C2 Phosphoinos 32.3 1.5E+02 0.0032 25.0 6.2 57 222-280 32-92 (100)
346 PF02601 Exonuc_VII_L: Exonucl 31.7 2.1E+02 0.0045 29.5 8.4 91 429-525 22-125 (319)
347 cd08696 C2_Dock-C C2 domains f 31.3 2.5E+02 0.0053 26.7 8.0 59 237-295 52-117 (179)
348 cd08694 C2_Dock-A C2 domains f 29.3 1.6E+02 0.0034 28.5 6.4 56 237-294 51-113 (196)
349 PF14924 DUF4497: Protein of u 28.3 1.1E+02 0.0024 26.5 4.8 31 268-298 28-61 (112)
350 PF05953 Allatostatin: Allatos 27.3 24 0.00052 17.8 0.2 9 401-409 1-9 (11)
351 TIGR00381 cdhD CO dehydrogenas 25.1 1.3E+02 0.0029 32.0 5.4 62 460-524 137-207 (389)
352 KOG2737 Putative metallopeptid 23.3 91 0.002 33.1 3.7 92 341-452 228-322 (492)
353 PF11618 DUF3250: Protein of u 22.6 1.1E+02 0.0024 26.4 3.7 58 240-299 12-75 (107)
354 KOG2353 L-type voltage-depende 22.0 4.8E+02 0.01 32.0 9.9 171 324-523 204-381 (1104)
355 PF10358 NT-C2: N-terminal C2 21.5 5.6E+02 0.012 22.5 12.5 52 248-299 48-106 (143)
356 PRK09722 allulose-6-phosphate 21.0 2.6E+02 0.0056 27.7 6.3 55 451-514 143-197 (229)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-113 Score=898.48 Aligned_cols=474 Identities=48% Similarity=0.775 Sum_probs=433.2
Q ss_pred CCCCCCCCCCCCcEEEEEEEc-------------CCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEcc
Q 008558 57 DLRDRDVLSKSDPMLVVYMKA-------------RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVD 123 (561)
Q Consensus 57 ~L~~~D~~sksDPyv~v~~~~-------------~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D 123 (561)
+|.+.|..+++||.|.+.... .++.|.+++|||+|.+.+||.|.++|.+.|.||+.|.|+|.+||.+
T Consensus 1 ~~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 1 NLMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDID 80 (529)
T ss_pred CccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecC
Confidence 356678889999999987632 3456788999999999999999999999999999999999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecceecccccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTT 203 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~~~ 203 (561)
.. ..++..+||+|+++|.+++++.......-+.++. . +....|+|++.+++.......
T Consensus 81 ~~-------~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-----------~----~~~~~g~iti~aee~~~~~~~ 138 (529)
T KOG1327|consen 81 SR-------TPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-----------G----KNAGSGTITISAEEDESDNDV 138 (529)
T ss_pred Cc-------cCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----------C----ccCCcccEEEEeecccccCce
Confidence 75 2267789999999999999997654433222322 1 225579999999998888889
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceecceeeeeec--CCCCccEEEEEEeccCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNSN 281 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~ef~~~~~~l--~d~~~~L~ieV~D~d~~ 281 (561)
+.+.++|++|.++|+++++|||+.+++..++++|..+|+||+++++++|.|.+|.++.+.+ .+.+++++++|||++..
T Consensus 139 ~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 139 VQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred eeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCC
Confidence 9999999999999999999999999999888999999999999999999999999998888 56789999999999999
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCC-CCcccccccEEEeEeeeeeeeeeeeccccceeeeEEEEEcccc
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGN-NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTA 360 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K-~~~~~~~G~i~l~~~~~~~~~sFldyi~gG~qi~~~vaIDfT~ 360 (561)
++|++||++.+++.+++. .+....+++++++++.| ++|++ +|++.+..|+....+||+|||.||+|+||+||||||+
T Consensus 219 ~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~-~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTa 296 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE-PGSPNQIMLINPKKKAKKKSYKN-SGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTA 296 (529)
T ss_pred CCcCceeEecccHHHhcc-cCCcccccccChhhhhhhhcccc-cceEEehheeehhhhhHHHHHccCceeeeEEEEEEec
Confidence 999999999999999974 55567889999887654 46787 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeeccc-CCCCCceeEEeCCCCCCCCcccCHHHHH
Q 008558 361 SNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIM 439 (561)
Q Consensus 361 SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~-~~~~~~~~~f~l~~~~~~~~~~g~~~v~ 439 (561)
|||+|++++|||||+|. ++|+||+||++||++|++||+||+||+|||||+ |+++.+||||+||+++.+|+|.|++|||
T Consensus 297 SNg~p~~~sSLHyi~p~-~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl 375 (529)
T KOG1327|consen 297 SNGDPRNPSSLHYIDPH-QPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVL 375 (529)
T ss_pred cCCCCCCCCcceecCCC-CCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHH
Confidence 99999999999999996 899999999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEEEEEeecCCC
Q 008558 440 MAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGAD 519 (561)
Q Consensus 440 ~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~siiivGvG~~~ 519 (561)
+||++++++|+|+|||+|+|||++|+++|+++.+ ...+||||||||||+|+||++|++|||+||+|||||||||||++|
T Consensus 376 ~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~-~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~d 454 (529)
T KOG1327|consen 376 EAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN-TAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDAD 454 (529)
T ss_pred HHHHhhcccccccCCCccHHHHHHHHHHHHHhcc-CCcceEEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCCC
Confidence 9999999999999999999999999999999865 778999999999999999999999999999999999999999999
Q ss_pred chhhhhcccCCCcccccCCCCccCCceeeeeecccccCC
Q 008558 520 FKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQSK 558 (561)
Q Consensus 520 f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~~ 558 (561)
|+.|++||+|. .+|+++ ||.+.|||||||+|+|+.++
T Consensus 455 f~~M~~lD~d~-~~l~~~-gr~~~rD~vQFV~f~~~~~~ 491 (529)
T KOG1327|consen 455 FDMMRELDGDD-PKLRSP-GRIAERDNVQFVPFRDIMNG 491 (529)
T ss_pred HHHHHHhhcCC-cccccc-cccccccceEeecHHHHhhc
Confidence 99999999888 677766 99999999999999999875
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1.7e-76 Score=584.91 Aligned_cols=231 Identities=52% Similarity=0.761 Sum_probs=218.7
Q ss_pred CCcccccccEEEeEeeeeeeeeeeeccccceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc
Q 008558 318 NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY 397 (561)
Q Consensus 318 ~~~~~~~G~i~l~~~~~~~~~sFldyi~gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~y 397 (561)
++|++ +|.|.+.+|++ +|||||||+||||+||+||||||+|||+|++|+||||+++. .+|+||+||++||+||++|
T Consensus 3 ~~~~~-~g~~~~~~~~~--~~tFldy~~~G~~~nl~vaIDfT~SNg~p~~~~SLHy~~~~-~~N~Yq~aI~~vg~il~~y 78 (254)
T cd01459 3 KVYKS-SGEVTLTDCRV--QPTFLDYRSAGLESNLIVAIDFTKSNGWPGEKRSLHYISPG-RLNPYQKAIRIVGEVLQPY 78 (254)
T ss_pred CCCCC-ceEEEEEEecc--CCCHHHHHhCCCeeeEEEEEEeCCCCCCCCCCCCcccCCCC-CccHHHHHHHHHHHHHHhc
Confidence 45677 99999999988 99999999999999999999999999999999999999987 7999999999999999999
Q ss_pred cCCCCcceeeeccc-CCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccC
Q 008558 398 DSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHG 476 (561)
Q Consensus 398 d~d~~~p~~GfG~~-~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~ 476 (561)
|+|++||+|||||+ ++...++|||| |++.+|+|.|++||++||++++++|+|+|||+|+|||++|+++|++.. ..
T Consensus 79 D~D~~ip~~GFGa~~~~~~~v~~~f~--~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~--~~ 154 (254)
T cd01459 79 DSDKLIPAFGFGAIVTKDQSVFSFFP--GYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASN--SQ 154 (254)
T ss_pred CCCCceeeEeecccCCCCCccccccC--CCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhc--CC
Confidence 99999999999998 44567899999 899999999999999999999999999999999999999999999774 33
Q ss_pred CceEEEEEEeCCcccCHHHHHHHHHHccCCCeEEEEEeecCCCchhhhhcccCCCcccccCCCCccCCceeeeeeccccc
Q 008558 477 QKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 556 (561)
Q Consensus 477 ~~y~vlliltdg~i~d~~~t~~~i~~as~~p~siiivGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~ 556 (561)
.+|+||||||||+|+||++|+++|++||++||||||||||+++|+.|++||+|+ + |++|+|+.+.|||||||+|++|+
T Consensus 155 ~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~-~-l~~~~~~~~~rDnvqFV~f~~~~ 232 (254)
T cd01459 155 SKYHILLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDD-G-LESSDGRIATRDIVQFVPFTEFM 232 (254)
T ss_pred CceEEEEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCcc-c-cccccCCcceecceeeecchhhc
Confidence 479999999999999999999999999999999999999999999999999887 4 99999999999999999999998
Q ss_pred CC
Q 008558 557 SK 558 (561)
Q Consensus 557 ~~ 558 (561)
.+
T Consensus 233 ~~ 234 (254)
T cd01459 233 SN 234 (254)
T ss_pred cc
Confidence 55
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1e-55 Score=402.33 Aligned_cols=145 Identities=59% Similarity=0.988 Sum_probs=140.8
Q ss_pred CccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeeccc-CCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcc
Q 008558 370 SLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHN 448 (561)
Q Consensus 370 slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~-~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~ 448 (561)
||||+++. ++|+||+||++||++|++||+||+||+|||||+ |+++.+||||||||++++|+|.|++||+++||+++++
T Consensus 1 SLH~~~~~-~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~ 79 (146)
T PF07002_consen 1 SLHYISPN-QPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPK 79 (146)
T ss_pred CcccCCCC-CCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhh
Confidence 89999998 799999999999999999999999999999999 6788999999999999999999999999999999999
Q ss_pred eeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEEEEEeec
Q 008558 449 VNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVG 516 (561)
Q Consensus 449 ~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~siiivGvG 516 (561)
|+|+|||+|+|||++|+++|++ ..++.++|+||||||||+|+||++|+++|++||++||||||||||
T Consensus 80 v~l~GPT~fapiI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 80 VQLSGPTNFAPIINHAAKIAKQ-SNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred eEECCCccHHHHHHHHHHHHhh-hccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999999999999999997 456789999999999999999999999999999999999999998
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=236.60 Aligned_cols=215 Identities=21% Similarity=0.310 Sum_probs=181.7
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC--ceeEEEEEEEEccCCccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe--~~q~L~~~VyD~D~~~~~~~ 130 (561)
++|++|+.+|..+.|||||++|+.++. ....+|.+.++++||.|+|+|.|.+..+ ..+.|.|.|||.|.+
T Consensus 174 ~qa~~Lp~~d~~g~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf----- 245 (421)
T KOG1028|consen 174 IQAHDLPAKDRGGTSDPYVKVYLLPDK---KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF----- 245 (421)
T ss_pred EEecCCCcccCCCCCCCeeEEEEcCCC---CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc-----
Confidence 799999999977889999999999843 3589999999999999999998885554 356999999999986
Q ss_pred ccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecceeccccccceeEeee
Q 008558 131 VKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRC 210 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~~~v~~~i~a 210 (561)
+++++||++.++|..+........|.+|... ... .....|+|.+++.+++..+.+.+.+++|
T Consensus 246 ------sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~----------~~~--~~~~~gel~~sL~Y~p~~g~ltv~v~ka 307 (421)
T KOG1028|consen 246 ------SRHDFIGEVILPLGEVDLLSTTLFWKDLQPS----------STD--SEELAGELLLSLCYLPTAGRLTVVVIKA 307 (421)
T ss_pred ------ccccEEEEEEecCccccccccceeeeccccc----------cCC--cccccceEEEEEEeecCCCeEEEEEEEe
Confidence 7899999999999998877666789998651 111 1122389999999999999999999999
Q ss_pred cCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-c--eeeeeecCCCCccEEEEEEeccCCCCCcee
Q 008558 211 SDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-V--FLNIQQVGSKDSPLIIECFNFNSNGKHDLI 287 (561)
Q Consensus 211 ~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f--~~~~~~l~d~~~~L~ieV~D~d~~g~~d~I 287 (561)
+||+.++..+.+|||+++++...+ +.....||.+.++++||+||| | .++.+.+. ...|.|+|||++..+++++|
T Consensus 308 r~L~~~~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~--~~~l~l~V~d~d~~~~~~~i 384 (421)
T KOG1028|consen 308 RNLKSMDVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA--EVSLELTVWDHDTLGSNDLI 384 (421)
T ss_pred cCCCcccCCCCCCccEEEEEecCC-ceeeeeeeecccCCCCCcccccEEEeCCHHHhh--eeEEEEEEEEccccccccee
Confidence 999999999999999999998754 667889999999999999999 4 44444443 35799999999999999999
Q ss_pred EEEEEehhh
Q 008558 288 GKVQKSLAD 296 (561)
Q Consensus 288 G~~~i~l~~ 296 (561)
|.+.+....
T Consensus 385 G~~~lG~~~ 393 (421)
T KOG1028|consen 385 GRCILGSDS 393 (421)
T ss_pred eEEEecCCC
Confidence 998887654
No 5
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.83 E-value=7.9e-20 Score=195.13 Aligned_cols=251 Identities=17% Similarity=0.167 Sum_probs=186.5
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
+.+. .+|+||+..|..|.+||||.|.+..+ ++.||.++.++|.|.|.|.|.+..... -+.|.|-|||.| .
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E-----~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~-- 77 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE-----EVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-L-- 77 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecch-----hhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-c--
Confidence 4444 58999999999999999999999652 799999999999999999886654322 248999999998 4
Q ss_pred cccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc--eeccccccce
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE--ECINSKTTTE 205 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e--~i~~~~~~v~ 205 (561)
+.|+.||.+.+.-++|...++..-|+.|.. -+. ..+.+|+|++..+ +.........
T Consensus 78 ---------~~D~~IGKvai~re~l~~~~~~d~W~~L~~-----------VD~--dsEVQG~v~l~l~~~e~~~~~~~~c 135 (800)
T KOG2059|consen 78 ---------KRDDIIGKVAIKREDLHMYPGKDTWFSLQP-----------VDP--DSEVQGKVHLELALTEAIQSSGLVC 135 (800)
T ss_pred ---------ccccccceeeeeHHHHhhCCCCccceeccc-----------cCC--ChhhceeEEEEEEeccccCCCcchh
Confidence 689999999999999999889999999965 332 3477899988664 3344555677
Q ss_pred eEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--e--e-------c--CCCCccE
Q 008558 206 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--Q--Q-------V--GSKDSPL 271 (561)
Q Consensus 206 ~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~--~-------l--~d~~~~L 271 (561)
.++.++.+-+.+ ++.+|||+++...+ +......+|.+++++.+|.|+| |.+.. . . + .+...+|
T Consensus 136 ~~L~~r~~~P~~-~~~~dp~~~v~~~g--~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 136 HVLKTRQGLPII-NGQCDPFARVTLCG--PSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhcccCcee-CCCCCcceEEeecc--cchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 788888777654 45699999998865 3333457999999999999999 33322 2 0 1 1124468
Q ss_pred EEEEEe-ccCCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEeEee
Q 008558 272 IIECFN-FNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFS 333 (561)
Q Consensus 272 ~ieV~D-~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~~~ 333 (561)
++++|+ ++....++|+|++.+++..+.+..++..||.|.......+.......|.++++-+.
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence 899998 66666799999999999999865666667776543221122111227888885553
No 6
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.79 E-value=7e-19 Score=170.31 Aligned_cols=174 Identities=22% Similarity=0.207 Sum_probs=132.0
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
.+++.||.|+|++.+..+.++| +.+.+++++.+++.++..||.|+...++.|+.. .. .++++
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~------k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~-~~-----~~~~~------ 65 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERS------RWEEAQESTRALARKCEEYDSDGITVYLFSGDF-RR-----YDNVN------ 65 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCch------HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCc-cc-----cCCcC------
Confidence 5789999999999887655543 468999999999999999999997666666553 11 12221
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHH-HHHhhc-cccCCceEEEEEEeCCcccCHHHHHHHHHHccCC--
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAAL-IAGQSL-ANHGQKYFVLLIITDGVVTDLQETKDALVKASDL-- 506 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~-~a~~~~-~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~-- 506 (561)
.+++.++|. ++.+.|+|++.+.|+.+++ ++.+.. .+.+++|.+++|||||..+|.+++.++|++|++.
T Consensus 66 ----~~~v~~~~~----~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~ 137 (199)
T cd01457 66 ----SSKVDQLFA----ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELD 137 (199)
T ss_pred ----HHHHHHHHh----cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhc
Confidence 556666664 5556799999999999985 443321 1334569999999999999999999999999862
Q ss_pred ---CeEEEEEeecCC--CchhhhhcccCCCcccccCCCCccCCceeeeeecccccC
Q 008558 507 ---PLSILIIGVGGA--DFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQS 557 (561)
Q Consensus 507 ---p~siiivGvG~~--~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~ 557 (561)
++.|.+||||++ +|..|+.|| |. | ++..+.||||+||+|++++.
T Consensus 138 ~~~~i~i~~v~vG~~~~~~~~L~~ld-~~---~---~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 138 ADNELAISFLQIGRDPAATAFLKALD-DQ---L---QEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred cccCceEEEEEeCCcHHHHHHHHHHh-HH---H---HhcCCcccceeeeeHHhhhc
Confidence 677777777774 899999999 43 3 22336899999999998754
No 7
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.79 E-value=1.5e-18 Score=154.24 Aligned_cols=112 Identities=51% Similarity=0.827 Sum_probs=98.2
Q ss_pred EEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCC-CceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 48 QIELSFSAADLRDRDVLSKSDPMLVVYMKARD-GALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 48 ~vel~isa~~L~~~D~~sksDPyv~v~~~~~~-~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
.+++.++|++|+++|..+++||||+|++.... ..|...+||+++++|+||+|+++|.+.+..+..+.|+|+|||+|...
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 58899999999999999999999999998743 46888999999999999999999999887778889999999999610
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
..++++++||++.+++.+|....+...+++|..
T Consensus 82 -------~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 -------KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred -------CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 013789999999999999998888889999854
No 8
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.76 E-value=7.8e-18 Score=147.14 Aligned_cols=107 Identities=41% Similarity=0.696 Sum_probs=92.0
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceecceeeeeec--CCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~ef~~~~~~l--~d~~~~L~ieV~D~d~ 280 (561)
.++++++|++|+.+|.+|++|||+++++..+++++...+||+++++++||+|++|.++...+ ++....|.|+|||++.
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKPFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceEEEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 57789999999999999999999999997755567788999999999999999988887666 3447899999999999
Q ss_pred CCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
.+++++||++.+++.+|. .....++.+++
T Consensus 82 ~~~d~~iG~~~~~l~~l~--~~~~~~~~~~~ 110 (110)
T cd04047 82 SGKHDLIGEFETTLDELL--KSSPLEFELIN 110 (110)
T ss_pred CCCCcEEEEEEEEHHHHh--cCCCceEEecC
Confidence 999999999999999995 44556666653
No 9
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.73 E-value=6.9e-17 Score=153.05 Aligned_cols=170 Identities=21% Similarity=0.304 Sum_probs=133.5
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
.+.+.||-|+ |++-...+ ..-|++..++..+..++|+|+.+++|-|+.+ |.-.+ +-
T Consensus 3 rV~LVLD~SG---------SM~~~yk~---G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~---------~~~~~---~v 58 (200)
T PF10138_consen 3 RVYLVLDISG---------SMRPLYKD---GTVQRVVERILALAAQFDDDGEIDVWFFSTE---------FDRLP---DV 58 (200)
T ss_pred EEEEEEeCCC---------CCchhhhC---ccHHHHHHHHHHHHhhcCCCCceEEEEeCCC---------CCcCC---Cc
Confidence 4677889988 55544433 5789999999999999999999999999998 22222 22
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEE
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSI 510 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~si 510 (561)
....+++.++.....+..+...|-|+++|+|+.+++...... ....-...|++|||.++|-.++.++|++||++|+.|
T Consensus 59 t~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifw 136 (200)
T PF10138_consen 59 TLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDRRAIEKLIREASDEPIFW 136 (200)
T ss_pred CHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccchHHHHHHHHhccCCCeeE
Confidence 333455555444444455576678999999999999877553 223357889999999999999999999999999999
Q ss_pred EEEeecCCCchhhhhcccCCCcccccCCCCccCCceeeeeeccccc
Q 008558 511 LIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 556 (561)
Q Consensus 511 iivGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~ 556 (561)
.+||||+.+|+.+++||.-. + +.-||+.|+...+..
T Consensus 137 qFVgiG~~~f~fL~kLD~l~-g---------R~vDNa~Ff~~~d~~ 172 (200)
T PF10138_consen 137 QFVGIGDSNFGFLEKLDDLA-G---------RVVDNAGFFAIDDID 172 (200)
T ss_pred EEEEecCCcchHHHHhhccC-C---------cccCCcCeEecCCcc
Confidence 99999999999999999433 2 267999999998865
No 10
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.71 E-value=9.7e-17 Score=143.81 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=91.9
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee-----CceeEEEEEEEEccCCcc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-----EVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-----e~~q~L~~~VyD~D~~~~ 127 (561)
++|+||+.+|..+.+||||+|++.. +..||+++++++||+|+|.|.|.+.. ...+.|.|.|||+|..
T Consensus 6 ~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~-- 77 (126)
T cd08682 6 LQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL-- 77 (126)
T ss_pred EECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc--
Confidence 6999999999999999999999854 57799999999999999999887755 2456899999999865
Q ss_pred cccccccccccceeeeeeEeechhhh--ccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIV--TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~--~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
+++++||++.++|.++. .......|++|..+ ... ..+.+|+|.++.
T Consensus 78 ---------~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~----------~~~--~~~~~Gei~l~~ 125 (126)
T cd08682 78 ---------GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESK----------PGK--DDKERGEIEVDI 125 (126)
T ss_pred ---------CCCceeEEEEEEHHHhhccCCCcccEEEECcCC----------CCC--CccccceEEEEe
Confidence 67999999999999997 33445689999651 101 124579998864
No 11
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=9.9e-17 Score=143.64 Aligned_cols=120 Identities=17% Similarity=0.276 Sum_probs=98.0
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCC-CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeee--
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ-- 262 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~-g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~-- 262 (561)
+|+|.++..+......+.+.+++|+||+.+|.. |.+|||+++++... +.....+||+++++++||+||| |.+.+.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-KSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-CCccccccCccCcCCCCCccCceEEEECCHH
Confidence 589999999988888899999999999999976 89999999999763 2334568999999999999999 655542
Q ss_pred ecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 263 QVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 263 ~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
.+. ...|.|+|||++..+++++||++.++|.++........|++|
T Consensus 80 ~l~--~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELP--TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhC--CCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 232 468999999999999999999999999999633333456654
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.69 E-value=3e-16 Score=139.35 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=92.1
Q ss_pred EEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecC-CCCCceeeeEEEEEeeCceeEEEEEEEEccCC
Q 008558 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (561)
Q Consensus 48 ~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n-~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~ 125 (561)
.++++ ++|++|++.+ +++|||||++.++. ...||.++.+ ++||+|+|+|.|.+..+ ...|.|+|||.|..
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~ 74 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF 74 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC
Confidence 46666 6999999888 79999999999964 4669999876 79999999999987643 35899999999976
Q ss_pred cccccccccccccceeeeeeEeech-hhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc
Q 008558 126 FHNVDVKTLKLVEQQFLGEATCTLS-QIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (561)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~~~L~-el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 195 (561)
+++++||++.++|. .+........|++|.. +.+ ....|.|++++.
T Consensus 75 -----------~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~-----------~~~---~~~~g~i~l~l~ 120 (121)
T cd04016 75 -----------TMDERIAWTHITIPESVFNGETLDDWYSLSG-----------KQG---EDKEGMINLVFS 120 (121)
T ss_pred -----------cCCceEEEEEEECchhccCCCCccccEeCcC-----------ccC---CCCceEEEEEEe
Confidence 78999999999996 5665555678999965 221 145699998764
No 13
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.69 E-value=4.1e-16 Score=138.73 Aligned_cols=117 Identities=23% Similarity=0.406 Sum_probs=96.6
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
+.++ ++|++|+.+|..+.+||||++++.. ....||+++++++||.|+|.|.+... +..+.|+|+|||+|..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~l~~~v~D~d~~-- 73 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-----KTVYKSKTIYKNLNPVWDEKFTLPIE-DVTQPLYIKVFDYDRG-- 73 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-----EEEEEeeeccCCCCCccceeEEEEec-CCCCeEEEEEEeCCCC--
Confidence 3444 6999999999999999999999853 25889999999999999999988764 3357999999999975
Q ss_pred cccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecce
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 196 (561)
+++++||++.++|.++........|++|.+ +. ..+..|+|.+..+.
T Consensus 74 ---------~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~-----------~~---~~~~~G~l~l~~~~ 119 (121)
T cd04042 74 ---------LTDDFMGSAFVDLSTLELNKPTEVKLKLED-----------PN---SDEDLGYISLVVTL 119 (121)
T ss_pred ---------CCCcceEEEEEEHHHcCCCCCeEEEEECCC-----------CC---CccCceEEEEEEEE
Confidence 689999999999999998777778999965 11 12457999987654
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.68 E-value=2.2e-16 Score=139.70 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=93.8
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeec-CCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~-n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
++++ ++|++|+++|..+++||||+|++.. ...||++++ +++||.|++.|.|.+..+..+.|.|+|||++..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 5555 6999999999999999999999864 478999985 579999999999988776678999999998864
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 195 (561)
+ +++||++.+++.++........|++|.. ..+..|+|.+...
T Consensus 76 ----------~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~----------------~~~~~G~i~l~l~ 117 (118)
T cd08681 76 ----------K-PDLIGDTEVDLSPALKEGEFDDWYELTL----------------KGRYAGEVYLELT 117 (118)
T ss_pred ----------C-CcceEEEEEecHHHhhcCCCCCcEEecc----------------CCcEeeEEEEEEE
Confidence 4 8999999999999987666678999864 1245789888653
No 15
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.68 E-value=4.4e-16 Score=138.91 Aligned_cols=119 Identities=23% Similarity=0.327 Sum_probs=95.6
Q ss_pred EEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccc
Q 008558 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHN 128 (561)
Q Consensus 50 el~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~ 128 (561)
.++ ++|++|+.+|..+.+||||+|++.. ...+|+++++++||.|+++|.+.+.....+.|.|+|||++..
T Consensus 3 ~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~--- 73 (123)
T cd04025 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLV--- 73 (123)
T ss_pred EEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCC---
Confidence 344 7999999999999999999999853 468999999999999999999988766667999999999865
Q ss_pred ccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 129 VDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
+++++||++.++|.++........|++|.+. ...++. +.+..|.|++..
T Consensus 74 --------~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-----~~~~~~----~~~~~G~l~~~~ 122 (123)
T cd04025 74 --------SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD-----PRAEEE----SGGNLGSLRLKV 122 (123)
T ss_pred --------CCCcEeEEEEEEHHHcccCCCCCCEEECCCC-----CCCCcc----ccCceEEEEEEe
Confidence 6789999999999999876666789999651 000001 236678888743
No 16
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.68 E-value=4.3e-16 Score=136.12 Aligned_cols=96 Identities=34% Similarity=0.576 Sum_probs=82.8
Q ss_pred EEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEe----eCceeEEEEEEEEcc
Q 008558 48 QIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ----FEVVQTLVFRIYDVD 123 (561)
Q Consensus 48 ~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~----fe~~q~L~~~VyD~D 123 (561)
.|++.++|++|+.+|..+++||||+|++.+.++.|...+||+++++++||+|+ .|.+.+. .+..+.|+|+|||+|
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 58899999999999999999999999987644467789999999999999999 6766542 233679999999999
Q ss_pred CCcccccccccccccceeeeeeEeechhhhcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~ 155 (561)
.. +++++||++.+++.+|...
T Consensus 81 ~~-----------~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 SS-----------GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CC-----------CCCcEEEEEEEEHHHHhcC
Confidence 65 7899999999999999844
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=4.7e-16 Score=137.94 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=86.1
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|++.|..+++||||++++.+.. ....||+++++|+||+|+++|.|.+..+..+.|+|+|||+|..
T Consensus 7 i~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~------- 76 (119)
T cd04036 7 LRATNITKGDLLSTPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV------- 76 (119)
T ss_pred EEeeCCCccCCCCCCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-------
Confidence 799999999999999999999986422 2578999999999999999999988766667899999998852
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
++++||++.+++.++..+.....|++|.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP 105 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC
Confidence 68899999999999988777788999965
No 18
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.67 E-value=1e-15 Score=134.98 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=86.8
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+.+|..+.+||||++++.. ...||+++++++||.|++.|.+....+..+.|.|+|||.+..
T Consensus 7 ~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~------- 73 (116)
T cd08376 7 VEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTG------- 73 (116)
T ss_pred EEEECCCCCCCCCCCCcEEEEEECC------EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCC-------
Confidence 7999999999999999999999853 578999999999999999999887666578999999999865
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+++++||++.++|.++........|++|.+
T Consensus 74 ----~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (116)
T cd08376 74 ----KKDEFIGRCEIDLSALPREQTHSLELELED 103 (116)
T ss_pred ----CCCCeEEEEEEeHHHCCCCCceEEEEEccC
Confidence 689999999999999988777889999954
No 19
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.67 E-value=4.2e-16 Score=139.60 Aligned_cols=120 Identities=16% Similarity=0.306 Sum_probs=97.4
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCC-CCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--e
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDL-FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--Q 262 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~-~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~ 262 (561)
+|+|.++..+......+.+.+++|+||+.+|. .|.+|||+++++... +.....+||+++++++||+||| |.+.+ .
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 48999999998888889999999999999875 589999999999753 3334578999999999999999 55544 2
Q ss_pred ecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 263 QVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 263 ~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
.+ ....|.|+|||++..+++++||++.+++.++........|++|
T Consensus 80 ~l--~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QL--ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred Hh--CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 23 2568999999999999999999999999999633333456654
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=6.6e-16 Score=138.63 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=92.3
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc---eeEEEEEEEEccC
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV---VQTLVFRIYDVDT 124 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~---~q~L~~~VyD~D~ 124 (561)
+.+. ++|++|+++|..+.+||||+|++.+ ...||+++++++||.|++.|.|.+.... ...|+|.|||.+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 4444 7999999999999999999999864 4679999999999999999998876422 3589999999886
Q ss_pred Ccccccccccccc-cceeeeeeEeechhhh-ccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 125 QFHNVDVKTLKLV-EQQFLGEATCTLSQIV-TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 125 ~~~~~~~~~~~l~-~~d~LG~~~~~L~el~-~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
. . +++|||++.+++.++. .......|++|.. +.. ..+.+|+|.++.
T Consensus 76 ~-----------~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~-----------~~~--~~~~~G~l~l~~ 123 (127)
T cd04022 76 S-----------GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK-----------RGL--FSRVRGEIGLKV 123 (127)
T ss_pred C-----------cCCCCeeeEEEEcHHHcCCCCCccceEeEeee-----------CCC--CCCccEEEEEEE
Confidence 4 4 7899999999999997 3344568999965 111 124579888865
No 21
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=9.9e-16 Score=135.74 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=86.1
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEeeC---ceeEEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe---~~q~L~~~VyD~D 123 (561)
+.+. ++|++|+.+|. |.+||||+|++.+ ..+.-....||.++.+++||+|||+|.|....+ ....|+|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3444 79999999984 9999999999853 111112467999999999999999999987643 3457999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.. +++++||++.++|.++........|++|..
T Consensus 81 ~~-----------~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 FA-----------RDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cc-----------CCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 54 678999999999999998877889999965
No 22
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.66 E-value=3.1e-16 Score=137.57 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=87.3
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ce--eeeeec
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQV 264 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~--~~~~~l 264 (561)
++|.++..+.+....+.+.+++|++|+ ..|.+|||+++++...+ + ....+|.+.++|+||+||| |. ++.+.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~-k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSE-G-QKEAQTALKKLALHTQWEEELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCc-C-ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence 468888889888999999999999998 34679999999997532 2 3467999999999999999 44 444444
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
. ...|.|.|||+|+.++|++||++.+++.++.
T Consensus 76 ~--~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 76 L--DGTLTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred C--CcEEEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 3 6789999999999999999999999999874
No 23
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=1.2e-15 Score=136.13 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=93.8
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.+|.++.+|||++++... ..++|+++++++||.|++ |.+.... .....|.|+|||++..
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~~~v~d~~~~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELME--GADSPLSVEVWDWDLV 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecCCCCCccCcEEEEEcCC--CCCCEEEEEEEECCCC
Confidence 345689999999999999999999999842 358999999999999998 7776642 2256899999999999
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.+++.++........|+.|.....+++++.++ .|.|+|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~-~G~l~~~ 121 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGN-LGSLRLK 121 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCc-eEEEEEE
Confidence 99999999999999996433445677776544333234445 8999884
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.65 E-value=7.6e-16 Score=137.30 Aligned_cols=116 Identities=16% Similarity=0.270 Sum_probs=93.0
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee---ee
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI---QQ 263 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~---~~ 263 (561)
|+|.+++.+. ...+.+.+++|++|+.+| .+.+|||+++++..+. .....+||+++++++||+||| |.++. ..
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~-~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDP-QKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCC-ccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 7888888876 566888899999999999 8999999999997642 234578999999999999998 66653 22
Q ss_pred cCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 264 l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
+ ....|.|+|||++..+++++||++.++|.++........|++|
T Consensus 78 l--~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 78 L--QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred h--CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 2 2568999999999999999999999999999632223345543
No 25
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=1.7e-15 Score=135.36 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred EEE-EEEcC---CCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCC
Q 008558 50 ELS-FSAAD---LRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (561)
Q Consensus 50 el~-isa~~---L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~ 125 (561)
+++ ++|++ |+.+|..|++||||++.+.+ +..||+++++++||+|+|+|.|.+.. ....|.|+|||.|..
T Consensus 3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d~~ 75 (126)
T cd08379 3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNSQS 75 (126)
T ss_pred EEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECCCc
Confidence 444 69999 89999999999999999854 57799999999999999999988753 234899999998863
Q ss_pred cccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+. .....++++||++.++|.++........|++|..
T Consensus 76 ~~-----~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 76 HW-----KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred cc-----cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 00 0012379999999999999987766678999975
No 26
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.1e-15 Score=136.25 Aligned_cols=122 Identities=18% Similarity=0.358 Sum_probs=95.6
Q ss_pred EEE-EEEcCCCCCCCCCCCCcEEEEEEEcC-CCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKAR-DGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 50 el~-isa~~L~~~D~~sksDPyv~v~~~~~-~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
.++ ++|++|+.+|..+++||||+|++.+. .+.+....||+++++++||.|++.|.+.+... .+.|.|+|||.|..
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~-- 79 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL-- 79 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC--
Confidence 344 79999999999999999999999763 23334467999999999999999999887643 45899999999865
Q ss_pred cccccccccccceeeeeeEeechhhhccCC------eeEEEEccccccccccccccCCCCCCCcccceEEeecce
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKN------RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~------~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 196 (561)
+++++||++.+++.++..... ...|++|.+ ..+ ..+..|+|.++...
T Consensus 80 ---------~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~-----------~~~--~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 ---------TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP-----------RSS--KSRVKGHLRLYMAY 132 (133)
T ss_pred ---------CCCCeeEEEEEEHHHCCCcCccccccccchheeeee-----------cCC--CCcceeEEEEEEee
Confidence 689999999999999986532 236888864 211 22568999987654
No 27
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=7e-16 Score=138.13 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=88.1
Q ss_pred cEEEEE-EEEcCCCCCCCC-CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~-sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~ 122 (561)
.++.++ ++|+||+++|.. +.+||||+|++.+. .......||+++++|+||+|+|+|.|....++ ...|.|.|||.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-KSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-CCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 457776 699999999976 89999999999863 22335679999999999999999998865432 34899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
|.. +++++||++.++|.++........|++|
T Consensus 94 ~~~-----------~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 94 DSL-----------GRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCC-----------CCCcEeEEEEEecCccccCCCCcceEEC
Confidence 865 6899999999999999776666789987
No 28
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.65 E-value=1.5e-15 Score=135.17 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=91.1
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.+|.+|.+|||++++..+ ..+++|+++++++||.|+| |.+... +....|.|+|||++..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~l~~~v~D~d~~ 73 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-----KTVYKSKTIYKNLNPVWDEKFTLPIE---DVTQPLYIKVFDYDRG 73 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-----EEEEEeeeccCCCCCccceeEEEEec---CCCCeEEEEEEeCCCC
Confidence 456789999999999999999999998743 3579999999999999997 777654 2357899999999999
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.+++.++........+++|.+++. . +. .|+|.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~-~----~~-~G~l~l~ 116 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS-D----ED-LGYISLV 116 (121)
T ss_pred CCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC-c----cC-ceEEEEE
Confidence 999999999999999963333335667765432 1 22 8999984
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.64 E-value=2.3e-15 Score=136.73 Aligned_cols=91 Identities=24% Similarity=0.373 Sum_probs=80.3
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~ 125 (561)
-++.++ ++|++|++.|..+++||||++++.. ...||+++++|+||.|+++|.|.+.....+.|.|+|||.|..
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 456666 6999999999999999999999853 578999999999999999999887655567999999999865
Q ss_pred cccccccccccccceeeeeeEeechhhhc
Q 008558 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVT 154 (561)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~~~L~el~~ 154 (561)
+++++||++.++|.++..
T Consensus 89 -----------~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 89 -----------SPDDFLGRTEIRVADILK 106 (136)
T ss_pred -----------CCCCeeEEEEEEHHHhcc
Confidence 678999999999999986
No 30
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.64 E-value=1.6e-15 Score=138.88 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=98.9
Q ss_pred cccceEEeecceeccccccceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeee
Q 008558 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ 262 (561)
Q Consensus 185 ~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~ 262 (561)
...|+|.++..+ ....+.+.+++|+||+.++ ..|.+|||+++++..+ ++....+||+++++++||+||| |.+.+.
T Consensus 15 ~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 15 PSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeEEEEEc
Confidence 457999998887 3567888899999999875 6789999999999763 3334678999999999999998 777765
Q ss_pred ecCCCCccEEEEEE-eccCCCCCceeEEEEEehhhHhhccCCCceeeeecc
Q 008558 263 QVGSKDSPLIIECF-NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (561)
Q Consensus 263 ~l~d~~~~L~ieV~-D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~ 312 (561)
+ .++.|.|+|| |++..+++++||++.++|.++........|++|.++
T Consensus 92 -l--~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 -P--TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred -C--CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 3 3678999999 688888999999999999998533333467777654
No 31
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=1.3e-15 Score=135.89 Aligned_cols=120 Identities=22% Similarity=0.365 Sum_probs=97.1
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
.|+|.+++++......+.+.+++|+||+.+|..+.+|||++++...+. ...+||+++++++||+|++ |.+......
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC---CCceecccCcCCCCCceeeeEEEeCCHHH
Confidence 589999999988888899999999999999999999999999997532 2478999999999999998 665543211
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
-....|.|+|||++..+++++||++.+++.++........|+++
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 11468999999999999999999999999998532333345444
No 32
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.63 E-value=3.8e-15 Score=133.44 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=92.2
Q ss_pred EEEcCCCCCCC--CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccc
Q 008558 53 FSAADLRDRDV--LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 53 isa~~L~~~D~--~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~ 130 (561)
++|++|+.+|. .+.+||||+|++.. ...||+++++++||.|++.|.+.+.....+.|.|+|||.|..
T Consensus 8 ~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~----- 76 (128)
T cd04024 8 VEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF----- 76 (128)
T ss_pred EEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC-----
Confidence 69999999998 89999999999853 578999999999999999999888765567999999999865
Q ss_pred ccccccccceeeeeeEeechhhhc---cCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 131 VKTLKLVEQQFLGEATCTLSQIVT---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L~el~~---~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
+++++||++.++|.++.. ......|++|.++ ....+....|+|+++.
T Consensus 77 ------~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~-----------~~~~~~~~~G~i~l~~ 126 (128)
T cd04024 77 ------AGKDYLGEFDIALEEVFADGKTGQSDKWITLKST-----------RPGKTSVVSGEIHLQF 126 (128)
T ss_pred ------CCCCcceEEEEEHHHhhcccccCccceeEEccCc-----------ccCccccccceEEEEE
Confidence 678999999999999973 2224579999651 1100235689998865
No 33
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=3.2e-15 Score=133.48 Aligned_cols=102 Identities=23% Similarity=0.382 Sum_probs=84.1
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
++++ ++|++|+++|.++++||||++++.+ ....||+++++++||.|++.|.+.+.. .+.|.|+|||++...
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~- 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-----GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFK- 73 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC-----ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCC-
Confidence 5555 6899999999999999999999853 258899999999999999999988754 579999999998651
Q ss_pred cccccccccccceeeeeeEeechhhhccCCe-eEEEEccc
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNR-SLTLDLVR 166 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~-~~~~~L~~ 166 (561)
...++|||++.+++.++....+. ..|++|+.
T Consensus 74 --------~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 74 --------KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred --------CCCCceEeEEEEEHHHccccCCCccceeEeec
Confidence 01268999999999999865533 56888855
No 34
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.63 E-value=2.8e-14 Score=160.84 Aligned_cols=230 Identities=20% Similarity=0.374 Sum_probs=155.4
Q ss_pred CCcccEEEEEE-EEcCCCCCC--CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEE
Q 008558 43 LGLFSQIELSF-SAADLRDRD--VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRI 119 (561)
Q Consensus 43 ~~~~~~vel~i-sa~~L~~~D--~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~V 119 (561)
..+--.|+++| +|++|...| +.+..|||+.+...+. .++||++.++++||+|+|+|.+... .-.++|.++|
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r-----~~gkT~v~~nt~nPvwNEt~Yi~ln-s~~d~L~Lsl 505 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR-----VIGKTRVKKNTLNPVWNETFYILLN-SFTDPLNLSL 505 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccc-----cCCccceeeccCCccccceEEEEec-ccCCceeEEE
Confidence 34457899986 899999999 6799999999986542 5889999999999999999866543 3345999999
Q ss_pred EEccCCcccccccccccccceeeeeeEeechhhhccCCe---------------eEEEEcc-----c-cccccccccccC
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR---------------SLTLDLV-----R-REETITPITEES 178 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~---------------~~~~~L~-----~-~~~~i~~~~~~~ 178 (561)
||.+.. .+++.+|++.++|..|...... ++.++|. . +....+.. ++.
T Consensus 506 yD~n~~-----------~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-e~~ 573 (1227)
T COG5038 506 YDFNSF-----------KSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSV-EPL 573 (1227)
T ss_pred Eecccc-----------CCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCcccccccc-CCc
Confidence 998765 6899999999999887643321 1222221 0 00000000 000
Q ss_pred CC----------------CC---CCccc-ceEEeeccee-----------------------------------------
Q 008558 179 NP----------------SN---RPKHC-GKLTVHAEEC----------------------------------------- 197 (561)
Q Consensus 179 ~~----------------~~---~~~~~-G~I~i~~e~i----------------------------------------- 197 (561)
.. ++ ..... ..+.+.+.++
T Consensus 574 ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~ 653 (1227)
T COG5038 574 EDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGK 653 (1227)
T ss_pred ccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCc
Confidence 00 00 00000 0011100000
Q ss_pred -------------------------c----------------------------cccc-cceeEeeecCCCcCCCCCCCC
Q 008558 198 -------------------------I----------------------------NSKT-TTELILRCSDLDCKDLFSRND 223 (561)
Q Consensus 198 -------------------------~----------------------------~~~~-~v~~~i~a~nL~~~d~~g~sD 223 (561)
. ...+ +.+.+..|.+|......+++|
T Consensus 654 ~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~d 733 (1227)
T COG5038 654 VIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSD 733 (1227)
T ss_pred eeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccc
Confidence 0 0000 122355688888777899999
Q ss_pred ceEEEEEEcCCCceeeEEEceeecCCCCCceecce-eeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 224 PFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF-LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 224 Py~~i~~~~~~g~~~~~~kTevik~tlnP~W~ef~-~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
||+++...+ ..+|||-....++||.|+++. +++- .....|.++|+|+...|++..||++.++++++.
T Consensus 734 Pya~v~~n~-----~~k~rti~~~~~~npiw~~i~Yv~v~---sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~ 801 (1227)
T COG5038 734 PYATVLVNN-----LVKYRTIYGSSTLNPIWNEILYVPVT---SKNQRLTLECMDYEESGDDRNLGEVNINVSNVS 801 (1227)
T ss_pred cceEEEecc-----eeEEEEecccCccccceeeeEEEEec---CCccEEeeeeecchhccccceeceeeeeeeeee
Confidence 999998854 578999999999999999843 3442 234459999999999999999999999999985
No 35
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.63 E-value=1.4e-15 Score=133.42 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=83.0
Q ss_pred cccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEEEEE
Q 008558 45 LFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYD 121 (561)
Q Consensus 45 ~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~VyD 121 (561)
...++.++ ++|++|+ . .+.|||||+|++.++++. ...+|.+.++|+||+|+|+|.|+...++. ..|.|.|||
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 34556666 7999999 3 467999999999763332 46699999999999999999998777654 479999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
+|.. +++++||++.+++.++....+...|.+|
T Consensus 87 ~Drf-----------s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 87 CDRF-----------SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCC-----------CCCceEEEEEEccccccCCccccchhcC
Confidence 9986 7899999999999987555555566554
No 36
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=2.2e-15 Score=136.45 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=96.0
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCC-ceeeEEEceeecCCCCCceec-ceeeeeec
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESG-THIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g-~~~~~~kTevik~tlnP~W~e-f~~~~~~l 264 (561)
.|+|.+++++......+.+.+++|++|+.++.+|.+|||+++++..+.. .....+||+++++|+||+|+| |.+.....
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 5999999999888888889999999999999999999999999875321 124579999999999999997 77776432
Q ss_pred --CCCCccEEEEEEeccCCCCCceeEEEEEehhhHhh
Q 008558 265 --GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 265 --~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~ 299 (561)
......|.|+|||++..+++++||++.++|.+|..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 23467899999999999999999999999999963
No 37
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.62 E-value=3.9e-15 Score=132.53 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=91.0
Q ss_pred EEEcCCCCCC-CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccc
Q 008558 53 FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDV 131 (561)
Q Consensus 53 isa~~L~~~D-~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~ 131 (561)
++|+||+.++ ..+.+||||.|++.. . .++||.++++|+||.|+|.|.|.+.. ....|.|.|||+|..
T Consensus 7 ~~a~~L~~~~~~~g~sDpYv~v~l~~---~--~~~kT~v~~kt~~P~WnE~F~f~v~~-~~~~l~~~v~d~~~~------ 74 (121)
T cd08401 7 GEAKNLPPRSGPNKMRDCYCTVNLDQ---E--EVFRTKTVEKSLCPFFGEDFYFEIPR-TFRHLSFYIYDRDVL------ 74 (121)
T ss_pred EEccCCCCCCCCCCCcCcEEEEEECC---c--cEEEeeEEECCCCCccCCeEEEEcCC-CCCEEEEEEEECCCC------
Confidence 7999999975 457899999999853 1 47999999999999999999988763 346999999999965
Q ss_pred cccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 132 KTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 132 ~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
+++++||.+.++|+++........|++|.. ... ..+.+|+|++..
T Consensus 75 -----~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-----------~~~--~~~~~G~i~l~~ 119 (121)
T cd08401 75 -----RRDSVIGKVAIKKEDLHKYYGKDTWFPLQP-----------VDA--DSEVQGKVHLEL 119 (121)
T ss_pred -----CCCceEEEEEEEHHHccCCCCcEeeEEEEc-----------cCC--CCcccEEEEEEE
Confidence 689999999999999987666678999965 111 124579998764
No 38
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.62 E-value=5.6e-15 Score=131.52 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=90.4
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+++|..|++||||++++.. ..++||+++++++||.|++.|.+.+. +..+.|.|.|||.+..
T Consensus 7 i~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~~~------- 73 (121)
T cd04054 7 VEGKNLPAKDITGSSDPYCIVKVDN-----EVIIRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDEDTL------- 73 (121)
T ss_pred EEeeCCcCCCCCCCCCceEEEEECC-----EeeeeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECCCC-------
Confidence 7999999999999999999999853 24689999999999999999998764 3346999999999865
Q ss_pred ccccccceeeeeeEeechhhhccC-CeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~-~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
+++++||++.+++.++.... ....|++|++ ..+ .....|+|++..
T Consensus 74 ----~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~-----------~~~--~~~~~G~i~l~~ 119 (121)
T cd04054 74 ----SRDDVIGKVSLTREVISAHPRGIDGWMNLTE-----------VDP--DEEVQGEIHLEL 119 (121)
T ss_pred ----CCCCEEEEEEEcHHHhccCCCCCCcEEECee-----------eCC--CCccccEEEEEE
Confidence 68999999999999987543 3568999965 111 124578887754
No 39
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=2.2e-15 Score=134.39 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=86.4
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEE-eeC--ceeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITY-QFE--VVQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~-~fe--~~q~L~~~VyD~ 122 (561)
..+.+. ++|++|+.+| .+.+||||+|++.+... -....||+++++++||.|+|+|.|.. ..+ ....|+|+|||+
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~-~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQ-KTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCc-cCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 456666 7999999999 89999999999986321 12478999999999999999999875 222 235899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
|.. +++++||++.++|.++........|++|
T Consensus 91 d~~-----------~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSL-----------VENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCC-----------cCCcEEEEEEEeccccccCCCccceEEC
Confidence 975 6899999999999999876666788887
No 40
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.62 E-value=4.5e-15 Score=131.82 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=87.2
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecC-CCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.+.+++|+++++.+ +|++|||+++.... ..+||+++++ ++||+||| |.+++. +....|.|+|||+|.
T Consensus 4 L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~---~~~~~l~~~V~d~d~ 73 (121)
T cd04016 4 LSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLP---EGVDSIYIEIFDERA 73 (121)
T ss_pred EEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEec---CCCcEEEEEEEeCCC
Confidence 456688999998888 89999999999943 3569999876 79999998 777653 224679999999999
Q ss_pred CCCCceeEEEEEehh-hHhhccCCCceeeeecccccCCCCcccccccEEEeE
Q 008558 281 NGKHDLIGKVQKSLA-DLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDK 331 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~-~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~ 331 (561)
.++|++||++.+++. .+........|++|...+. + ++ .|.|+|.-
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~--~---~~-~g~i~l~l 119 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQG--E---DK-EGMINLVF 119 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcCccC--C---CC-ceEEEEEE
Confidence 999999999999996 5653334456788764322 1 12 89999853
No 41
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.62 E-value=3e-15 Score=133.01 Aligned_cols=105 Identities=25% Similarity=0.433 Sum_probs=85.4
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCC-CceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVES-GTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~-g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
.+.++++|++|+++|.+|++|||+++++.... +.+...+||+++++++||+|++ |.+... .+....|.|+|||++.
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~--~~~~~~l~~~V~d~d~ 79 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY--FEEVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE--eEeeeEEEEEEEEecC
Confidence 35688999999999999999999999998754 3567789999999999999998 666532 1235689999999997
Q ss_pred ----CCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 281 ----NGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 281 ----~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
.+++++||++.+++.+|....+...+++|
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 78999999999999999643333344555
No 42
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.62 E-value=4.4e-15 Score=133.08 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=94.3
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+. ..|++||||++++.. . ....||+++++|+||.|++.|.|.+.. ..+.|+|+|||+|..
T Consensus 6 ~~A~~L~~--~~g~~dpyv~v~~~~-~---~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~------- 71 (126)
T cd08678 6 IKANGLSE--AAGSSNPYCVLEMDE-P---PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKK------- 71 (126)
T ss_pred EEecCCCC--CCCCcCCEEEEEECC-C---CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCC-------
Confidence 79999998 779999999999853 1 246899999999999999999888753 356899999999975
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecceecc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECIN 199 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~ 199 (561)
+++++||++.+++.++........|++|.. +.. ......|+|.+.......
T Consensus 72 ----~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~-----------~~~-~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 72 ----SDSKFLGLAIVPFDELRKNPSGRQIFPLQG-----------RPY-EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ----CCCceEEEEEEeHHHhccCCceeEEEEecC-----------CCC-CCCCcceEEEEEEEEecc
Confidence 679999999999999998777778999865 110 012457999987766544
No 43
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=2.2e-15 Score=134.59 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=96.2
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 264 (561)
+|+|.++.++......+.+.+++|+||+.+|.++.+|||++++....++ ..+||+++++++||.|++ |.+.....
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~ 78 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYE 78 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHH
Confidence 5999999999888888999999999999999999999999999854322 368999999999999998 66542111
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
......|.|+|||++..+++++||++.+++.++........|+.|
T Consensus 79 ~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 79 KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 112467999999999999999999999999999632232334443
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.62 E-value=3.3e-15 Score=133.41 Aligned_cols=105 Identities=17% Similarity=0.276 Sum_probs=88.6
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
..+.+. ++|++|+.+|..+.+||||+|++.+... ..+||+++++++||.|+|.|.+.+..+. .+.|+|+|||.|
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS---NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC---CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 445555 7999999999999999999999965322 4789999999999999999998866543 458999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
.. +++++||++.++|+++........|++|+
T Consensus 93 ~~-----------~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QF-----------SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CC-----------CCCceeEEEEEecccccCCCCcceEEECc
Confidence 65 68999999999999998766777899984
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=5.2e-15 Score=132.76 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee--CceeEEEEEEEEccCCccc
Q 008558 51 LSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF--EVVQTLVFRIYDVDTQFHN 128 (561)
Q Consensus 51 l~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f--e~~q~L~~~VyD~D~~~~~ 128 (561)
|-|+|++|++ ..+++||||+|++.. ...||+++++++||.|++.|.+.+.. +..+.|.|+|||++..
T Consensus 1 ~vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~--- 69 (127)
T cd08373 1 LVVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKV--- 69 (127)
T ss_pred CeEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCC---
Confidence 3589999999 789999999999854 46899999999999999999988753 3567999999999865
Q ss_pred ccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecceecccc
Q 008558 129 VDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSK 201 (561)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~ 201 (561)
+++++||++.++|.++........|++|.+ ..+ ....|+|.+.+.+.+...
T Consensus 70 --------~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~-----------~~~---~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 70 --------GRNRLIGSATVSLQDLVSEGLLEVTEPLLD-----------SNG---RPTGATISLEVSYQPPDG 120 (127)
T ss_pred --------CCCceEEEEEEEhhHcccCCceEEEEeCcC-----------CCC---CcccEEEEEEEEEeCCCC
Confidence 678999999999999998777778999965 111 123689998887766544
No 46
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=4.6e-15 Score=135.83 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=88.1
Q ss_pred cEEEEE-EEEcCCCCCC-CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEE-Ecc
Q 008558 47 SQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIY-DVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D-~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~Vy-D~D 123 (561)
.++++. ++|+||+.+| ..+.+||||++++.+. ++-....||+++++|+||+|+|+|.|... .....|.|.|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 556666 6999999875 6789999999999873 22234789999999999999999998877 45669999999 566
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.. ++++|||++.++|.++........|++|.+
T Consensus 107 ~~-----------~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RM-----------DKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CC-----------CCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 43 678999999999999866666678999976
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=2.2e-15 Score=132.05 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=82.9
Q ss_pred EEEE-EEEcCCCCCCCC-CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC---ceeEEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~-sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe---~~q~L~~~VyD~D 123 (561)
++++ ++|++|+..|.. +++||||+|++... + ....||+++++|+||.|++.|.+.+..+ ..+.|+|+|||+|
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 4555 699999999998 99999999998652 2 2578999999999999999998876654 3468999999999
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
.. +++++||++.+++.+|... ..|++++
T Consensus 80 ~~-----------~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 80 RF-----------TADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CC-----------CCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 75 6799999999999999844 3466663
No 48
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.62 E-value=3.1e-15 Score=134.03 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=97.8
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
.|+|.++..+....+.+.+.+++|+||+.++.++.+|||++++.... +.+...+||+++++++||+|+| |.+.+..-.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-CCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 58999999988888889999999999999999999999999998753 3345689999999999999998 655542111
Q ss_pred CCCccEEEEEEeccCC--CCCceeEEEEEehhhHhhccCCCceeee
Q 008558 266 SKDSPLIIECFNFNSN--GKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~--g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
-....|.|.|||++.. +++++||++.+++.+|........|++|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 1246899999999875 6899999999999998533333345554
No 49
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=3.7e-15 Score=133.44 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=87.6
Q ss_pred cEEEEE-EEEcCCCCCCC-CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~-~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~ 122 (561)
.++.+. ++|+||+.+|. .+.+||||+|++.+. +......||+++++++||.|+|+|.|....+. ...|.|.|||+
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 456665 79999999886 489999999999763 22335779999999999999999998865432 34799999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
|.. +++++||++.++|.++........|++|
T Consensus 94 ~~~-----------~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 94 DRF-----------GRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCC-----------CCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 865 7899999999999999877777789987
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.61 E-value=3.7e-15 Score=133.05 Aligned_cols=105 Identities=27% Similarity=0.364 Sum_probs=89.0
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
..++++ ++|++|+.+|..+.+||||+|++.+... ...||+++++++||.|+|.|.|.+..+. ...|+|+|||+|
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 557776 6999999999999999999999976332 4789999999999999999998875432 348999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
.. +++++||++.++|.++..+.....|++|.
T Consensus 93 ~~-----------~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RF-----------SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CC-----------CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 65 67899999999999997776777899874
No 51
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.61 E-value=5.6e-15 Score=132.39 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=89.3
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec---CCCCccEEEEEEecc
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV---GSKDSPLIIECFNFN 279 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l---~d~~~~L~ieV~D~d 279 (561)
.+.+++|+||+.+|..|.+|||++++... ..+||+++++++||+||| |.|.+... ......|.|+|||++
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 35688999999999999999999998843 468999999999999998 66555321 113568999999999
Q ss_pred CCCCCceeEEEEEehhhHhh--ccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 280 SNGKHDLIGKVQKSLADLEK--LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~--~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
..+++++||++.+++.++.. ......|++|...+.+. .+. +|+|+|.
T Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~---~~~-~Gei~l~ 124 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKD---DKE-RGEIEVD 124 (126)
T ss_pred ccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCC---ccc-cceEEEE
Confidence 99999999999999999962 22234577776533211 112 8999884
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3.6e-15 Score=133.14 Aligned_cols=120 Identities=13% Similarity=0.246 Sum_probs=95.6
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
+|+|.++..+.+..+.+.+.+++|++|+.+|..|.+|||++++.... + ..++||+++++++||.|+| |.+.+..-.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-R--SNTKQSKIHKKTLNPEFDESFVFEVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-C--CCcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence 58999999888877888888999999999999999999999998642 2 2468999999999999998 555432111
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
-....|.|+|||++..+++++||++.++++++........|++|
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 12468999999999999999999999999999632222344444
No 53
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=3.6e-15 Score=133.15 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=97.3
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 264 (561)
.|+|.+++.+......+.+.+++|++|+.++.++.+|||++++.... +.....+||+++++++||+|++ |.+.....
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHH
Confidence 48899999888878888899999999999999999999999998653 2334688999999999999998 66553211
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
......|.|+|||++..+++++||++.++|.+.. ..+...||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 1125689999999999899999999999999843 3344456665
No 54
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.61 E-value=1.1e-14 Score=128.77 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=91.7
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
++++ ++|++|+.+|..+.+||||++++.. ..+||+++++++||.|+++|.+... +..+.|.|+|||.+..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~~~-- 73 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDEDKD-- 73 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECCCC--
Confidence 4444 7999999999999999999999854 3579999999999999999988754 3356999999999864
Q ss_pred cccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 195 (561)
+++++||++.+++.++... ...|++|.. ... +.+..|+|.+..+
T Consensus 74 ---------~~~~~iG~~~~~l~~~~~~--~~~~~~l~~-----------~~~--~~~~~G~i~l~~~ 117 (119)
T cd08377 74 ---------KKPEFLGKVAIPLLSIKNG--ERKWYALKD-----------KKL--RTRAKGSILLEMD 117 (119)
T ss_pred ---------CCCceeeEEEEEHHHCCCC--CceEEECcc-----------cCC--CCceeeEEEEEEE
Confidence 6789999999999998754 356999865 111 2256899988653
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.61 E-value=4.3e-15 Score=133.51 Aligned_cols=111 Identities=16% Similarity=0.249 Sum_probs=92.9
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCC-CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~-g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l 264 (561)
.|+|.++..+......+.+.+++|+||+.+|.. |.+|||+++++....+ ....+||+++++++||+||| |.+++..-
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~-~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKS-HNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCc-ccceeecccccCCCCCccceEEEEEcCHH
Confidence 388999999988888899999999999999975 9999999999976432 23477999999999999998 66654211
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
.-....|.|.|||++..+++++||++.++|.++.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 1125789999999999899999999999999995
No 56
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.61 E-value=7.9e-15 Score=129.99 Aligned_cols=100 Identities=25% Similarity=0.371 Sum_probs=84.9
Q ss_pred EEEE-EEEcCCCCCCCC------CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEE
Q 008558 49 IELS-FSAADLRDRDVL------SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (561)
Q Consensus 49 vel~-isa~~L~~~D~~------sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD 121 (561)
+.+. ++|++|+.+|.. +.+||||+|++.+ ..+||+++++++||.|++.|.+.+.....+.|+|+|||
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d 76 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFD 76 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEe
Confidence 3444 699999999863 6899999999854 58999999999999999999888766567899999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.|.. ++++||++.++|.++........|++|.+
T Consensus 77 ~~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 77 EDPD------------KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred cCCC------------CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 8852 68899999999999987666678999965
No 57
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.60 E-value=6.7e-15 Score=131.58 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=89.0
Q ss_pred cceeEeeecC---CCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEec
Q 008558 203 TTELILRCSD---LDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (561)
Q Consensus 203 ~v~~~i~a~n---L~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~ 278 (561)
+.+.+++|++ |+.+|..|.+|||+++.... +.+||+++++++||+||| |.|... +....|.|+|||+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~---~~~~~l~v~V~d~ 72 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVY---DPCTVLTVGVFDN 72 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEec---CCCCEEEEEEEEC
Confidence 3466899999 89999999999999998743 367999999999999998 777663 3356899999999
Q ss_pred cCCC------CCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEE
Q 008558 279 NSNG------KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 279 d~~g------~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
+..+ .+++||++.+++.++........+++|...+.++- +. .|+|+.
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~---~~-~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGV---KK-MGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCc---cC-CcEEEe
Confidence 9873 89999999999999964333346888886553221 11 788764
No 58
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.60 E-value=1.2e-14 Score=134.09 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=91.8
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecC-CCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDV 131 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n-~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~ 131 (561)
++|++|+++|..|++||||+|++.+ ...||+++.+ ++||+|+|.|.|.+.....+.|.|.|||.+..
T Consensus 7 i~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~------ 74 (150)
T cd04019 7 IEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGP------ 74 (150)
T ss_pred EEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCC------
Confidence 6999999999999999999999964 5789999977 69999999999887544456899999998864
Q ss_pred cccccccceeeeeeEeechhhhcc----CCeeEEEEccccccccccccccCCCCCCCcccceEEeecce
Q 008558 132 KTLKLVEQQFLGEATCTLSQIVTR----KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (561)
Q Consensus 132 ~~~~l~~~d~LG~~~~~L~el~~~----~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~ 196 (561)
+++++||++.++|.++... .....|++|....... +.++ ..+..|+|+|.+..
T Consensus 75 -----~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~----~~~k---~~k~~g~l~l~i~~ 131 (150)
T cd04019 75 -----NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAM----EQKK---KRKFASRIHLRLCL 131 (150)
T ss_pred -----CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcc----cccc---cCcccccEEEEEEe
Confidence 5789999999999998643 2245799997620000 0001 12557888887654
No 59
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=5.2e-15 Score=132.08 Aligned_cols=106 Identities=28% Similarity=0.365 Sum_probs=85.7
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee-C--ceeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-E--VVQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-e--~~q~L~~~VyD~ 122 (561)
.++.++ ++|++|+.+|..+.+||||+|++.+. +......||+++++++||.|+++|.|.... + ....|+|+|||+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 456666 79999999999999999999999762 333468899999999999999999887533 2 346899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
+.. +++++||++.++|.+.. ..+...|++|+
T Consensus 95 ~~~-----------~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 95 DRD-----------GENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-----------CCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 865 67899999999999833 33456799873
No 60
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.60 E-value=1.3e-14 Score=130.34 Aligned_cols=123 Identities=20% Similarity=0.352 Sum_probs=91.2
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
+++. ++|++|+.+|..+++||||+|++.. ..+||+++++++||.|++.|.+..... .+.|.|+|||+|....
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~ 75 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIK 75 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcc
Confidence 5554 7999999999999999999999853 478999999999999999998876433 4589999999985310
Q ss_pred cccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEee
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVH 193 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~ 193 (561)
.........+++++||++.+++.++.. ....|++|.+ +.. +...+|+|.++
T Consensus 76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~-----------~~~--~~~~~G~i~~~ 126 (127)
T cd04027 76 SRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEK-----------RTD--KSAVSGAIRLH 126 (127)
T ss_pred cccceeccccCCCcceEEEEEhHHccC--CCCeEEECcc-----------CCC--CCcEeEEEEEE
Confidence 000000011469999999999998853 3457999975 222 33568998875
No 61
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=7.7e-15 Score=131.44 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=90.2
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
..+.++ ++|+||+.+|..+.+||||+|++.+ .+.+....||+++++++||+|+|+|.|.+..+. ...|.|.|||.+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLP-DKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEc-CCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 567776 5999999999999999999999976 333457899999999999999999999876543 358999999987
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
... .+++++||++.++|.++........|++|
T Consensus 95 ~~~---------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 95 SFL---------SREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ccc---------CCCCceEEEEEEecccccccCCccceEEC
Confidence 530 15789999999999999877777789887
No 62
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=4.9e-15 Score=134.58 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=98.0
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
+|+|.+++++......+.+.+++|+||+.+|.+|.+|||+++++... ++....+||+++++++||.|+| |.|.+..-.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-KKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-CceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 48999999998888888999999999999999999999999998653 4445678999999999999998 655542111
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
.....|.|+|||++..+++++||++.+++... ..+...|+++..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 13567999999999999999999999999883 333344555544
No 63
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=136.26 Aligned_cols=90 Identities=30% Similarity=0.482 Sum_probs=80.0
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
+++. +++.+|..+|+.++|||||++.+++ +..||.++++++||+|++.|.|... +....|++.|||+|..
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v~-d~~~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYKNLNPEWNEELTFTVK-DPNTPLKVTVYDKDTF-- 78 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecCCCCCcccceEEEEec-CCCceEEEEEEeCCCC--
Confidence 5555 6899999999999999999999976 6889999999999999999988776 4456999999999987
Q ss_pred cccccccccccceeeeeeEeechhhhccC
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
+++||||+|+++|..++...
T Consensus 79 ---------s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 ---------SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ---------CcccccceeeeccHHHHHHh
Confidence 78999999999999988754
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=7.7e-15 Score=130.62 Aligned_cols=120 Identities=17% Similarity=0.284 Sum_probs=94.3
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
|+|.+++.+......+.+.+++|+||+.++ ..+.+|||++++.... +.....+||+++++++||+|++ |.+.+..-.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 678888888777788888999999999999 7889999999998653 2333578999999999999998 555442111
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceee
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQN 308 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~ 308 (561)
-....|.|+|||++..+++++||++.+++.++........||+
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 1246899999999999999999999999999952222234554
No 65
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.59 E-value=1.2e-14 Score=129.41 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=89.8
Q ss_pred ccEEEEE-EEEcCCCCCC-CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYD 121 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D-~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~VyD 121 (561)
..++.+. ++|++|+.+| ..+.+||||+|++.+... ...||+++++++||+|+|.|.|.+..+.. ..|+|.|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~---~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER---RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC---CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 3556666 6999999999 688999999999875332 46899999999999999999988766532 479999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
.+.. +++++||++.++|.++........|++|.
T Consensus 90 ~~~~-----------~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRF-----------SRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcC-----------CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 8865 67899999999999999888888999985
No 66
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=6.4e-15 Score=131.49 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=89.4
Q ss_pred CcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEE
Q 008558 44 GLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIY 120 (561)
Q Consensus 44 ~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~Vy 120 (561)
....++.++ ++|+||+.+|..+.+||||++++.+..+++....||+++++++||+|+|+|.|.+..++ ...|.|.||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 334667776 68999999998899999999999885544445789999999999999999999876553 359999999
Q ss_pred EccCCcccccccccccccceeeeeeEeechhhhcc-CCeeEEEEc
Q 008558 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR-KNRSLTLDL 164 (561)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~-~~~~~~~~L 164 (561)
|.|.. +++++||++.+.|+++... .....|++|
T Consensus 91 ~~~~~-----------~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPD-----------QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCC-----------CceeEEEEEEEEhhhccCCCccccccccC
Confidence 99865 6899999999999999544 345567764
No 67
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.59 E-value=7.2e-15 Score=128.54 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=82.2
Q ss_pred EEEcCCCCCCC-CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCce-eeeEEEEEeeCc--eeEEEEEEEEccCCccc
Q 008558 53 FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTW-ITKHIITYQFEV--VQTLVFRIYDVDTQFHN 128 (561)
Q Consensus 53 isa~~L~~~D~-~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w-~e~f~i~~~fe~--~q~L~~~VyD~D~~~~~ 128 (561)
++|++|+.+|. .+.+||||+|++.+ ...||+++++++||.| +|.|.+.+..+. .+.|+|+|||+|..
T Consensus 6 ~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 6 VAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY--- 76 (110)
T ss_pred EEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC---
Confidence 69999999994 78999999999954 6889999999999999 999998876543 36899999999865
Q ss_pred ccccccccccceeeeeeEeechhhhcc---CCeeEEEEccc
Q 008558 129 VDVKTLKLVEQQFLGEATCTLSQIVTR---KNRSLTLDLVR 166 (561)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~~~L~el~~~---~~~~~~~~L~~ 166 (561)
+++++||++.++|.++... .....|++|.+
T Consensus 77 --------~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 --------SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --------CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6889999999999999873 23456888854
No 68
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=1.2e-14 Score=129.95 Aligned_cols=105 Identities=22% Similarity=0.339 Sum_probs=87.3
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC---ceeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe---~~q~L~~~VyD~ 122 (561)
..+.++ ++|++|+.+|..+++||||+|++.+..+ ...||+++++++||.|+|+|.+..... ..+.|+|+|||.
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 456666 6999999999999999999999865322 468999999999999999998864221 235799999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
|.. +++++||++.++|.++........|++|.
T Consensus 93 d~~-----------~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRF-----------SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCC-----------cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 865 67899999999999998777778899885
No 69
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=3.2e-14 Score=127.25 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=83.9
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+.+|..+++||||+++... .+...+||+++++++||.|+|+|.+....+..+.|.|+|||+|..
T Consensus 8 ~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~------- 77 (126)
T cd04043 8 VRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV------- 77 (126)
T ss_pred EEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC-------
Confidence 6999999999999999999998753 124689999999999999999999988776667999999999865
Q ss_pred ccccccceeeeeeEeechhhhcc---CCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTR---KNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~---~~~~~~~~L~~ 166 (561)
+++++||++.++|.++... .....|++|..
T Consensus 78 ----~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 78 ----GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred ----CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 6899999999999887543 23457998843
No 70
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=1.8e-14 Score=132.45 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=83.9
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEe-------------eC--ce
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-------------FE--VV 112 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~-------------fe--~~ 112 (561)
+.+. ++|++|+. ..|.+||||+|++..... -....||+++++|+||+|+|.|.|... .+ ..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~-k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNK-KQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcc-cCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 4444 79999998 568999999999976321 124679999999999999999998874 11 23
Q ss_pred eEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhcc-CCeeEEEEcccc
Q 008558 113 QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR-KNRSLTLDLVRR 167 (561)
Q Consensus 113 q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~-~~~~~~~~L~~~ 167 (561)
..|.|.|||.+.. ++++|||++.++|.++... .....|++|.++
T Consensus 79 ~~L~i~V~d~~~~-----------~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMG-----------GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCC-----------CCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 5899999999864 6899999999999999865 456789999764
No 71
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=2e-14 Score=126.41 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=87.0
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+..+..+.+||||+|++.+ .+.+||+++.+++||.|+++|.+.+.....+.|.|+|||.+..
T Consensus 6 i~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~------- 73 (115)
T cd04040 6 ISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG------- 73 (115)
T ss_pred EeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCC-------
Confidence 7999999999999999999999853 1578999999999999999999988766678999999999865
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+++++||++.+++.++........|++|..
T Consensus 74 ----~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 74 ----GKDDLLGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred ----CCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence 678999999999999988777788999965
No 72
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.9e-14 Score=128.13 Aligned_cols=117 Identities=25% Similarity=0.436 Sum_probs=92.5
Q ss_pred EEEE-EEEcCCCCCCC-CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 49 IELS-FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 49 vel~-isa~~L~~~D~-~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
++++ ++|++|+..+. .+.+||||++.+... .+.+||+++++++||.|++.|.+.+. +..+.|+|+|||.+..
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~- 77 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK- 77 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC-
Confidence 5555 69999998774 467999999999652 26899999999999999999988776 5678999999999865
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCee-EEEEccccccccccccccCCCCCCCcccceEEeeccee
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRS-LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~-~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i 197 (561)
+++++||++.++|.++....... .+..|.. ..+..|+|++.+...
T Consensus 78 ----------~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----------------~~k~~G~i~~~l~~~ 123 (124)
T cd04044 78 ----------RKDKLIGTAEFDLSSLLQNPEQENLTKNLLR----------------NGKPVGELNYDLRFF 123 (124)
T ss_pred ----------CCCceeEEEEEEHHHhccCccccCcchhhhc----------------CCccceEEEEEEEeC
Confidence 67999999999999998765543 3333422 125579999987654
No 73
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.58 E-value=8.8e-15 Score=136.89 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=87.1
Q ss_pred ceEEeecceec------------cccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCcee
Q 008558 188 GKLTVHAEECI------------NSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWK 255 (561)
Q Consensus 188 G~I~i~~e~i~------------~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~ 255 (561)
|+|.++..+.+ ....+.+.+++|+||+.+|..+.+|||+++++... +.....+||+++++++||.||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCCC
Confidence 56666665554 33567788999999999999999999999988653 333568999999999999999
Q ss_pred c-ceeeeeec-CCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 256 S-VFLNIQQV-GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 256 e-f~~~~~~l-~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
+ |.+..... .-.+..|.|+|||++..+++++||++.+++.++.
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccc
Confidence 8 65543211 1124689999999999999999999999999986
No 74
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.8e-14 Score=129.50 Aligned_cols=117 Identities=21% Similarity=0.389 Sum_probs=88.6
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCce--------eeEeeeeeecCCCCCce-eeeEEEEEeeCceeEEEEEEEEcc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGAL--------VEVGRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFRIYDVD 123 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~--------~~~~rTevi~n~lNP~w-~e~f~i~~~fe~~q~L~~~VyD~D 123 (561)
++|++|+ +|.+|++||||++++.+ .+.| .+..||+++++++||+| ++.|.+... ..+.|.|+|||++
T Consensus 8 ~~A~~L~-~~~fg~~DPyvki~~~~-~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~D~~ 83 (137)
T cd08691 8 LQARNLK-KGMFFNPDPYVKISIQP-GKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVKDKF 83 (137)
T ss_pred EEeCCCC-CccCCCCCceEEEEEEC-CCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEEecC
Confidence 7999998 88899999999999975 2333 35789999999999999 999988764 3458999999987
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCC---eeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN---RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~---~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
... ....+++||++.+++.++..... ...|++|.. +.. ....+|+|.+..
T Consensus 84 ~~~--------~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k-----------~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 84 AKS--------RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR-----------RTP--TDHVSGQLTFRF 136 (137)
T ss_pred CCC--------CccCCceEEEEEEEHHHhcccccCCceEEEEECCc-----------CCC--CCcEEEEEEEEe
Confidence 530 11237999999999999975532 346788754 221 235678887754
No 75
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=2.4e-14 Score=129.31 Aligned_cols=119 Identities=23% Similarity=0.398 Sum_probs=91.4
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcC-CCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVE-SGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~-~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
.+.+++|++|+.+|..|.+|||++++.... .+.....++|+++++++||.|++ |.+... .....|.|+|||++..
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN---PREHRLLFEVFDENRL 79 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc---CCCCEEEEEEEECCCC
Confidence 456899999999999999999999998753 23344578999999999999998 766653 2246799999999999
Q ss_pred CCCceeEEEEEehhhHhhccC------CCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHS------SGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~------~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.+++.++..... ...+|+|..+.+.++ . .|+|+|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~-~G~l~~~ 129 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSR----V-KGHLRLY 129 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCc----c-eeEEEEE
Confidence 999999999999999963211 125677753322222 2 8999984
No 76
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.58 E-value=1.5e-14 Score=126.03 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=76.0
Q ss_pred EEEE-EEEcCCCCCCCC----CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC-ceeEEEEEEEEc
Q 008558 49 IELS-FSAADLRDRDVL----SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDV 122 (561)
Q Consensus 49 vel~-isa~~L~~~D~~----sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe-~~q~L~~~VyD~ 122 (561)
++++ ++|++|++.|.. +.+||||+|++.. ...||+++++++||+|++.|.|..... ..+.|.|+|||+
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~ 76 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDK 76 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEEC
Confidence 5565 699999998853 3589999999843 467999999999999999998876543 345899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccC
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
|.. +++++||++.++|.+|....
T Consensus 77 d~~-----------~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 77 DKF-----------SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCC-----------CCCcceEEEEEEHHHHHhhC
Confidence 975 78999999999999998654
No 77
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=156.08 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=76.3
Q ss_pred eeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCC
Q 008558 205 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 283 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~ 283 (561)
+....|.||+..|.+|.+|||+++.+.. ..+|+|+++|+|+||+||| +.+++. ......+.+.|+|||...+
T Consensus 1044 I~~~~~~nl~~~d~ng~sDpfv~~~ln~-----k~vyktkv~KktlNPvwNEe~~i~v~--~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1044 IMLRSGENLPSSDENGYSDPFVKLFLNE-----KSVYKTKVVKKTLNPVWNEEFTIEVL--NRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred EEEeccCCCcccccCCCCCceEEEEecc-----eecccccchhccCCCCccccceEeee--ccccceEEEEEeecccCCC
Confidence 3567899999999999999999999965 2489999999999999998 666553 4456789999999999999
Q ss_pred CceeEEEEEehhhHh
Q 008558 284 HDLIGKVQKSLADLE 298 (561)
Q Consensus 284 ~d~IG~~~i~l~~l~ 298 (561)
++.||.+.++|..|.
T Consensus 1117 nd~lg~~~idL~~l~ 1131 (1227)
T COG5038 1117 NDLLGTAEIDLSKLE 1131 (1227)
T ss_pred ccccccccccHhhcC
Confidence 999999999999996
No 78
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.57 E-value=9.4e-15 Score=130.44 Aligned_cols=108 Identities=14% Similarity=0.239 Sum_probs=92.5
Q ss_pred eEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--eecC
Q 008558 189 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--QQVG 265 (561)
Q Consensus 189 ~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~~l~ 265 (561)
+|.++..+.+....+.+.+++|+||+.++..+.+|||+++++....++....+||+++++++||+||| |.|++ +.+.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 57788888888888999999999999999888999999999987543323578999999999999999 66554 3333
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
++.|.|.|||++..+++++||++.++|.++.
T Consensus 82 --~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~ 112 (124)
T cd08680 82 --QKTLQVDVCSVGPDQQEECLGGAQISLADFE 112 (124)
T ss_pred --cCEEEEEEEeCCCCCceeEEEEEEEEhhhcc
Confidence 6899999999999999999999999999995
No 79
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.57 E-value=2.3e-14 Score=126.81 Aligned_cols=112 Identities=17% Similarity=0.323 Sum_probs=90.0
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.++.++.+|||++++... ..++|+++++++||.|++ |.+... +....|.|+|||++..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~---~~~~~l~~~v~d~~~~ 73 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIK---DIHDVLEVTVYDEDKD 73 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEec---CcCCEEEEEEEECCCC
Confidence 345578999999999999999999998843 257999999999999998 777663 3357899999999988
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.+++.++. .+...+++|..+....+. .|+|.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~-----~G~i~l~ 115 (119)
T cd08377 74 KKPEFLGKVAIPLLSIK--NGERKWYALKDKKLRTRA-----KGSILLE 115 (119)
T ss_pred CCCceeeEEEEEHHHCC--CCCceEEECcccCCCCce-----eeEEEEE
Confidence 89999999999999994 344567777655432222 8999884
No 80
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.57 E-value=3.2e-14 Score=126.63 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=87.4
Q ss_pred ceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 204 TELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 204 v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
.+.+++|+||+.++ ..|.+|||++++... ..++||+++++++||.|+| |.+.+. +..+.|.|.|||++..
T Consensus 3 ~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-----~~~~kT~v~~kt~~P~WnE~F~f~v~---~~~~~l~~~v~d~~~~ 74 (121)
T cd08401 3 KIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-----EEVFRTKTVEKSLCPFFGEDFYFEIP---RTFRHLSFYIYDRDVL 74 (121)
T ss_pred EEEEEEccCCCCCCCCCCCcCcEEEEEECC-----ccEEEeeEEECCCCCccCCeEEEEcC---CCCCEEEEEEEECCCC
Confidence 35579999999974 568899999998832 2468999999999999998 766653 2257899999999999
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||.+.++++++........|++|......++ . .|.|+|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~----~-~G~i~l~ 118 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE----V-QGKVHLE 118 (121)
T ss_pred CCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc----c-cEEEEEE
Confidence 999999999999999963233335667654322222 2 8999885
No 81
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.57 E-value=3.6e-14 Score=127.25 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=88.9
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~ 125 (561)
..++++ ++|++|+..|.+|++||||+++... ...||+++++++||+|+|.|.+.... ..+.|+|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCCCCCCcccceEEEEecC-CCCEEEEEEEECCCC
Confidence 345665 6999999999999999999998754 46799999999999999999876553 356899999998753
Q ss_pred cccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
++++||++.+++.++... ...+++|..+ . +.. +.+..|+|.+..
T Consensus 76 ------------~d~~lG~~~~~l~~~~~~--~~~~~~l~~~------~---~~~--~~~~~G~i~~~~ 119 (126)
T cd04046 76 ------------CDEFLGQATLSADPNDSQ--TLRTLPLRKR------G---RDA--AGEVPGTISVKV 119 (126)
T ss_pred ------------CCCceEEEEEecccCCCc--CceEEEcccC------C---CCC--CCCCCCEEEEEE
Confidence 479999999999876433 3356777431 0 111 336689998765
No 82
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.57 E-value=2e-14 Score=128.00 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=86.3
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+.+ ++||||++++.. +..||+++++++||+|+|+|.|.+.....+.|.|.|||.|..
T Consensus 7 i~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~------- 69 (121)
T cd08378 7 VKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA------- 69 (121)
T ss_pred EEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-------
Confidence 799999988 799999999864 478999999999999999999987654567999999999852
Q ss_pred ccccccceeeeeeEeechhhhccC-----CeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRK-----NRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~-----~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
++++||++.++|.++.... ....|++|.. .. ..+.+|+|.++.
T Consensus 70 -----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~-----------~~---~~~~~G~i~l~~ 117 (121)
T cd08378 70 -----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED-----------KK---GGRVGGELMLAV 117 (121)
T ss_pred -----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccC-----------CC---CCccceEEEEEE
Confidence 6899999999999986532 2347999966 22 125679988765
No 83
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.57 E-value=2.4e-14 Score=128.73 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=83.9
Q ss_pred ccEEEEE-EEEcCCCCCCCC-CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEE-EeeCc--eeEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEV--VQTLVFRIY 120 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~-sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~-~~fe~--~q~L~~~Vy 120 (561)
..+++++ ++|++|+.+|.. +.+||||+|++.+... ...||+++++++||.|+|+|.|. ...+. ...|+|.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~---~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE---HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC---ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 3567776 699999999986 8999999999976322 47899999999999999999883 33222 237999999
Q ss_pred EccCCcccccccccccccceeeeeeEeechhhhcc--CCeeEEEEcc
Q 008558 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR--KNRSLTLDLV 165 (561)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~--~~~~~~~~L~ 165 (561)
|+|.. +++++||++.++|.++... .....|++|.
T Consensus 92 d~d~~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRY-----------SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCC-----------CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99865 6899999999999999654 2234677764
No 84
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.57 E-value=2.1e-14 Score=126.99 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=86.3
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecC-CCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.+.+++|++|+++|.++++|||++++... ..++|+++++ ++||.|++ |.+... .+....|.|+|||++.
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~ 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEIT--EDKKPILKVAVFDDDK 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEec--CCCCCEEEEEEEeCCC
Confidence 456789999999999999999999999843 4679998865 79999998 666553 2235789999999998
Q ss_pred CCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.+ +++||++.+++.++........+++|..+. + . +|.|+|.
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~---~----~-~G~i~l~ 115 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG---R----Y-AGEVYLE 115 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccCC---c----E-eeEEEEE
Confidence 76 899999999999986433445667765321 1 2 8999884
No 85
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.57 E-value=4.7e-15 Score=134.59 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=96.3
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d 266 (561)
|+|.++.++.+....+.+.+++|+||+.+|..|.+|||+++++..+ ++.....||.++++++||+||| |.|.+....-
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-GRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-CccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 8899999998888889999999999999999999999999999763 4445567999999999999998 6555422111
Q ss_pred CCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
.+..|.|+|||++..+++++||++.+..... ..+...|..++.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 2578999999999999999999999977643 333333444444
No 86
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.57 E-value=2.2e-14 Score=128.65 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=88.4
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-CCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~d~~~~L~ieV~D~d~ 280 (561)
+.+.+++|++|+.+|..|.+|||++++..+ ..+||+++++++||+||+ |.+..... ......|.|+|||++.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 456789999999999999999999998743 367999999999999998 66665432 1124679999999998
Q ss_pred CC-CCceeEEEEEehhhHhh-ccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 281 NG-KHDLIGKVQKSLADLEK-LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g-~~d~IG~~~i~l~~l~~-~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.+ .+++||++.+++.++.. ......|++|..+.+..+ . +|+|.|.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~----~-~G~l~l~ 122 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSR----V-RGEIGLK 122 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCC----c-cEEEEEE
Confidence 86 88999999999999962 122335667754322111 2 8998884
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=1.8e-14 Score=128.36 Aligned_cols=119 Identities=15% Similarity=0.290 Sum_probs=94.7
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
|+|.++.++......+.+.+++|+||+.++ .++.+|||++++...++ ...++|+++++++||+|++ |.+.+..-.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~---~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE---RRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC---CCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 788899988888888899999999999999 78899999999986532 2367999999999999998 655542211
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
.....|.|+|||++..+++++||++.++|.++........|++|
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 12468999999999988999999999999999743322344444
No 88
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.56 E-value=2.2e-14 Score=127.68 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=86.7
Q ss_pred cEEEEE-EEEcCCCCCC-CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D-~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~ 122 (561)
..++++ ++|+||+.+| ..+.+||||+|++.+. +.....+||+++++++||+|+++|.|....+. ...|.|+|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 567776 6999999999 7889999999998752 22335789999999999999999988755432 35899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
+.. +++++||++.++|.++........|++|
T Consensus 93 ~~~-----------~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRF-----------GRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-----------cCCceeeEEEEecccccccCCCccEEEC
Confidence 865 6789999999999999765556678876
No 89
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.56 E-value=2.5e-14 Score=126.83 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=76.7
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcC-CCceeeEEEceeecCCCCCceec-ceeeeeec-CCCCccEEEEEEecc
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVE-SGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 279 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~-~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~d~~~~L~ieV~D~d 279 (561)
+.+.+++|++|+.++. |.+|||+++++.+. .+.....++|.++++++||+||| |.|.+..- ......|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4567899999999884 99999999998531 12334578999999999999998 66665321 223467999999999
Q ss_pred CCCCCceeEEEEEehhhHhh
Q 008558 280 SNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~ 299 (561)
..+++++||++.+++.++..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcC
Confidence 88889999999999999973
No 90
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.56 E-value=4.6e-14 Score=126.47 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=86.7
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+++.+++|++|+. .+|.+|||++++... ....+||+++++++||.|++ |.+.+. .....|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE----PPQKYQSSTQKNTSNPFWDEHFLFELS---PNSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC----CCcEEEeEEEecCCCCccCceEEEEeC---CCCCEEEEEEEECCCC
Confidence 3567899999988 779999999999842 13468999999999999998 655542 2357899999999999
Q ss_pred CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.+++.++........++++..... + ..+ ..|+|++.
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~-~~~-~~G~l~l~ 116 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPY--E-GDS-VSGSITVE 116 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCCCC--C-CCC-cceEEEEE
Confidence 999999999999999964333344566543211 1 112 28999984
No 91
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.56 E-value=5.5e-14 Score=129.78 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=90.5
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecC-CCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~-tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.+.+++|++|+.+|.+|.+|||+++++.. ..++|+++++ ++||+||| |.|..... ....|.|+|||++.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 345689999999999999999999999843 4779999877 69999998 77766422 24689999999998
Q ss_pred CCCCceeEEEEEehhhHhhc----cCCCceeeeeccccc--CCCCcccccccEEEe
Q 008558 281 NGKHDLIGKVQKSLADLEKL----HSSGQGQNLFLSTAA--GNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~----~~~~~~~~l~n~~~~--~K~~~~~~~G~i~l~ 330 (561)
.+++++||++.++|+++... .....|++|..+.+. +|+..+. +|.|+|.
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~-~g~l~l~ 128 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKF-ASRIHLR 128 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcc-cccEEEE
Confidence 88899999999999998521 113568888765421 1122233 7888884
No 92
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.56 E-value=2.9e-14 Score=128.26 Aligned_cols=107 Identities=25% Similarity=0.392 Sum_probs=90.6
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCC-CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceee-e--
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-I-- 261 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~-g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~-~-- 261 (561)
+|+|.++..+......+.+.+++|+||+.++.. +.+|||+++++..+. ...+||+++++++||.||| |.|. .
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~---~~~~kT~v~~~t~nP~wnE~F~f~~~~~ 78 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRKTRNPVYDETFTFYGIPY 78 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc---CceeeccEEcCCCCCceeeEEEEcccCH
Confidence 699999999888888888999999999999986 899999999986532 2467999999999999998 6652 2
Q ss_pred eecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 262 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 262 ~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
..+ ....|.|+|||++..+++++||++.++|.++.
T Consensus 79 ~~~--~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 79 NQL--QDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred HHh--CCCEEEEEEEEcCCCCCCceeEEEEEeccccC
Confidence 222 24579999999999999999999999999995
No 93
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.56 E-value=2.4e-14 Score=127.02 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc-eeEEEEEEEEccC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-VQTLVFRIYDVDT 124 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~-~q~L~~~VyD~D~ 124 (561)
.+++++ ++|+||+++| .+.+||||+|++.+... -....||+++++++||.|+|+|.|.+..+. ...|.|.|||.+.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~-~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKE-VRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCC-CcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 557776 6999999999 88999999999987322 135779999999999999999998765433 2468899999986
Q ss_pred CcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
.. .++++||++.++|.++..+.....|+.|
T Consensus 90 ~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred Cc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 41 3578999999999999865555678865
No 94
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.55 E-value=7.5e-14 Score=130.11 Aligned_cols=100 Identities=24% Similarity=0.381 Sum_probs=83.3
Q ss_pred EEEE-EEEcCCCCCCC------------------------------CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCC
Q 008558 49 IELS-FSAADLRDRDV------------------------------LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNP 97 (561)
Q Consensus 49 vel~-isa~~L~~~D~------------------------------~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP 97 (561)
++++ ++|++|+++|. .+++||||+|++.+ ..++||+++++++||
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~~~nP 83 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIENSENP 83 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCCCCCC
Confidence 5565 69999999983 46799999999964 146899999999999
Q ss_pred ceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 98 TWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 98 ~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|+|.|.+.+. +..+.|.|.|||.|.. ++++||++.+++.++........|++|.+
T Consensus 84 ~WnE~F~~~~~-~~~~~l~~~V~d~d~~------------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~ 139 (158)
T cd04015 84 VWNESFHIYCA-HYASHVEFTVKDNDVV------------GAQLIGRAYIPVEDLLSGEPVEGWLPILD 139 (158)
T ss_pred ccceEEEEEcc-CCCCEEEEEEEeCCCc------------CCcEEEEEEEEhHHccCCCCcceEEECcC
Confidence 99999988764 3446899999998854 35899999999999987766778999965
No 95
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.55 E-value=9.1e-14 Score=124.64 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=91.3
Q ss_pred EEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 48 ~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
.+++. ++|+||+.++ .+||||+|++.+ ...+||.+ ++++||.|+|.|.|.......+.|.|.|||.+..
T Consensus 5 ~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~-----~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~- 74 (126)
T cd08400 5 SLQLNVLEAHKLPVKH---VPHPYCVISLNE-----VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR- 74 (126)
T ss_pred EEEEEEEEeeCCCCCC---CCCeeEEEEECC-----EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC-
Confidence 45565 7999999864 689999999953 14679997 4689999999999875444446799999999865
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeeccee
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i 197 (561)
+++++||++.++|.++........|++|... ... ..+..|+|++++.+.
T Consensus 75 ----------~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~----------~~~--~~~~~G~i~l~l~~~ 123 (126)
T cd08400 75 ----------SKDSEIAEVTVQLSKLQNGQETDEWYPLSSA----------SPL--KGGEWGSLRIRARYS 123 (126)
T ss_pred ----------CCCCeEEEEEEEHhHccCCCcccEeEEcccC----------CCC--CCCcCcEEEEEEEEE
Confidence 6899999999999999876666789999651 110 125579999987654
No 96
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.55 E-value=6.2e-14 Score=127.22 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=89.5
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEe-e--------CceeEEEEE
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-F--------EVVQTLVFR 118 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~-f--------e~~q~L~~~ 118 (561)
++++ ++|++|+++|..+++||||+|++.. ...||+++++|+||.|++.|.+... . +..+.|.|+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 4444 6999999999999999999999853 4789999999999999999987532 1 133579999
Q ss_pred EEEccCCcccccccccccccceeeeeeEe-echhhhc---cCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATC-TLSQIVT---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 119 VyD~D~~~~~~~~~~~~l~~~d~LG~~~~-~L~el~~---~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
|||+|.. +++++||++.+ ++..+.. ......|++|.. .....|+|.++.
T Consensus 77 V~d~d~~-----------~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~----------------~~~~~Geil~~~ 129 (135)
T cd04017 77 LFDQDSV-----------GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK----------------GGQSAGELLAAF 129 (135)
T ss_pred EEeCcCC-----------CCCccceEEEeeeeeecccCCCCCCCceEEEeec----------------CCCchhheeEEe
Confidence 9999965 68899999986 4433332 234558999954 124579999987
Q ss_pred ceec
Q 008558 195 EECI 198 (561)
Q Consensus 195 e~i~ 198 (561)
+.++
T Consensus 130 ~~~~ 133 (135)
T cd04017 130 ELIE 133 (135)
T ss_pred EEEE
Confidence 7553
No 97
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.55 E-value=4.7e-14 Score=128.15 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=75.9
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+++|.+|.+|||++++... ..+||+++++++||.||+ |.|.+..+ ....|.|+|||++..
T Consensus 17 L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~d~~ 88 (136)
T cd08375 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDL--EQDVLCITVFDRDFF 88 (136)
T ss_pred EEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCc--cCCEEEEEEEECCCC
Confidence 445578999999999999999999999843 468999999999999998 66665432 246899999999999
Q ss_pred CCCceeEEEEEehhhHhh
Q 008558 282 GKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~ 299 (561)
+++++||++.+++.++..
T Consensus 89 ~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 89 SPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCeeEEEEEEHHHhcc
Confidence 999999999999999963
No 98
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.55 E-value=2.9e-14 Score=128.16 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=86.0
Q ss_pred ccEEEEE-EEEcCCCCCCCC-CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYD 121 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~-sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD 121 (561)
..++.++ ++|+||+.+|.. +.+||||+|++.+..+. ....||+++++++||+|+|+|.|....++ ...|.|.|||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~-~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH-NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc-cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 3567766 699999999975 99999999999873322 24779999999999999999998865542 3589999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccC---CeeEEEEc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK---NRSLTLDL 164 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~---~~~~~~~L 164 (561)
.+.. +++++||++.++|.++.... ....|++|
T Consensus 93 ~~~~-----------~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTL-----------KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCC-----------cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 8865 68899999999999985542 34468887
No 99
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.55 E-value=2.4e-14 Score=126.91 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=84.9
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|++.+.++.+|||++++.... + ...+||+++++++||+||+ |.+.... .....|.|+|||++..
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~--~~~~kT~vv~~t~nP~Wne~f~f~i~~--~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTA-S--DEKKRTKTIKNSINPVWNETFEFRIQS--QVKNVLELTVMDEDYV- 76 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCC-C--CccCccceecCCCCCccceEEEEEeCc--ccCCEEEEEEEECCCC-
Confidence 456899999999999999999999998542 1 2468999999999999998 7765532 2345799999999988
Q ss_pred CCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 283 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
++++||++.+++.++........+++|.. + + +|.|+|+
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~----~-----~g~l~~~ 114 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP-Q----G-----KEELEVE 114 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCC-C----C-----CceEEEE
Confidence 89999999999999963222233455432 1 1 6888773
No 100
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=2.1e-14 Score=130.44 Aligned_cols=107 Identities=14% Similarity=0.271 Sum_probs=91.0
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCC--CCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceee--e
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN--I 261 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~--~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~--~ 261 (561)
.|+|.+++.+.+..+.+.+.+++|+||+.+|. .+.+|||+++++..+ ++.....||+++++++||+||| |.|. .
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCH
Confidence 38999999999999999999999999999983 345999999999874 4456688999999999999999 5544 3
Q ss_pred eecCCCCccEEEEEEeccCCCCCceeEEEEEehhh
Q 008558 262 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (561)
Q Consensus 262 ~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~ 296 (561)
+.+. +..|.|+|||+|..+++++||++.+.+..
T Consensus 80 ~~L~--~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLA--ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhC--ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 4333 56799999999999999999999999864
No 101
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.55 E-value=1.2e-14 Score=132.09 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=96.3
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
.|+|.++..+.+..+.+.+.+++|++|+.+|..|.+|||+++++.. +++....++|+++++++||.|++ |.+....-.
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 4889999999888888888999999999999999999999999864 24445678999999999999998 555542111
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
-....|.|+|||++..+++++||++.+++... ......|.+++.
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 11357999999999999999999999999764 222234555554
No 102
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.54 E-value=1.2e-14 Score=131.45 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=94.1
Q ss_pred EEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCC
Q 008558 190 LTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKD 268 (561)
Q Consensus 190 I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~ 268 (561)
|.++..+......+.+.+++|++|+.+|..|.+|||++++.... +.+...+||+++++++||+||+ |.+.+....-..
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD-AGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC-CCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 56777777777888899999999999999999999999999763 3345678999999999999998 665543211124
Q ss_pred ccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 269 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 269 ~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
..|.|+|||++..+++++||++.+++... ......|+++++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 68999999999988999999999999864 333345666654
No 103
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.54 E-value=7.7e-14 Score=124.17 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=88.6
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+++|.+|++|||++++... ..++||+++++++||.|++ |.+... ...+.|.|+|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~---~~~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-----EVIIRTATVWKTLNPFWGEEYTVHLP---PGFHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-----EeeeeeeeEcCCCCCcccceEEEeeC---CCCCEEEEEEEECCCC
Confidence 456689999999999999999999998842 3468999999999999998 776652 2357899999999999
Q ss_pred CCCceeEEEEEehhhHhhcc-CCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 GKHDLIGKVQKSLADLEKLH-SSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~-~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++++||++.++++++.... ....|++|......+ + ..|+|++.
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~----~-~~G~i~l~ 118 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE----E-VQGEIHLE 118 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC----c-cccEEEEE
Confidence 99999999999999985211 234566665432111 1 28999874
No 104
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=4.7e-15 Score=151.15 Aligned_cols=112 Identities=21% Similarity=0.382 Sum_probs=94.1
Q ss_pred CCcccceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee
Q 008558 183 RPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI 261 (561)
Q Consensus 183 ~~~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~ 261 (561)
+++.+|+|.+.++- ....+.+.+-.|+||-+||.+|.||||+++.+..+ .+-....||++++.+|||+||| |.+.+
T Consensus 164 htE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD-~~~~sKqKTkTik~~LNP~wNEtftf~L 240 (683)
T KOG0696|consen 164 HTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPD-PKNESKQKTKTIKATLNPVWNETFTFKL 240 (683)
T ss_pred chhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccC-CcchhhhhhhhhhhhcCccccceeEEec
Confidence 44678999987754 44556777889999999999999999999998774 3334577999999999999998 55544
Q ss_pred eecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 262 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 262 ~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
. .+|.++-|.|||||||+.+++||+|+..+.+++|.
T Consensus 241 k-p~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 241 K-PSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred c-cccccceeEEEEecccccccccccceecccHHHHh
Confidence 2 26889999999999999999999999999999996
No 105
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.54 E-value=1.3e-14 Score=131.39 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=94.3
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d 266 (561)
|+|.++..+.+..+.+.+.+++|++|+++|.+|.+|||+++++... +.....++|+++++++||.|++ |.|.+..-.-
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE-GRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 6788888888888888889999999999999999999999998652 4445688999999999999998 5554321111
Q ss_pred CCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
....|.|+|||++..+++++||++.+++... ..+...|++++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 1357999999999999999999999998733 223333445544
No 106
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.54 E-value=4e-14 Score=125.65 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=85.0
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d 266 (561)
|+|.++.++ ....+.+.+++|+||++++ .|.+|||+++++... .......||+++++++||+||| |.+.... .+
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~-~~ 75 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-KEVRFRQKTSTVPDSANPLFHETFSFDVNE-RD 75 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-CCCcceEeCccccCCCCCccccEEEEEcCh-HH
Confidence 677777765 4567888899999999999 889999999999763 2234577999999999999998 6665421 12
Q ss_pred CCccEEEEEEeccCCC-CCceeEEEEEehhhHh
Q 008558 267 KDSPLIIECFNFNSNG-KHDLIGKVQKSLADLE 298 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g-~~d~IG~~~i~l~~l~ 298 (561)
....|.|+|||++..+ ++++||++.+++.++.
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 2356899999999865 4689999999999995
No 107
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.54 E-value=6.1e-14 Score=123.60 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=84.7
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+.+|.++.+|||++++... ..++|+++++++||.|++ |.+... ....+.|.|+|||++..+
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~--~~~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLF--DDQSQILEIEVWDKDTGK 74 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECC------EeEecccccCCCCCceeEEEEEEec--CCCCCEEEEEEEECCCCC
Confidence 34578999999999999999999999842 468999999999999998 776653 223678999999999999
Q ss_pred CCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 283 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
++++||++.+++.++........+++|.. . .|.|++.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-~----------~G~~~~~ 111 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQTHSLELELED-G----------EGSLLLL 111 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCceEEEEEccC-C----------CcEEEEE
Confidence 99999999999999863222223444432 1 5888764
No 108
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.53 E-value=7.9e-14 Score=125.00 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=85.8
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+..|.+|.+|||+++.... ..+||+++++++||+|++ |.+.. .+....|.|+|||++..+
T Consensus 6 ~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~---~~~~~~l~i~V~d~~~~~ 76 (126)
T cd04046 6 QVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKDTLSPEFDTQAIFYR---KKPRSPIKIQVWNSNLLC 76 (126)
T ss_pred EEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCCCCCCcccceEEEEe---cCCCCEEEEEEEECCCCC
Confidence 44578999999999999999999998743 358999999999999998 54544 244678999999998765
Q ss_pred CCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 283 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+++||++++++.++. .....+++|....+ +.+.+. .|+|.|+
T Consensus 77 -d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~--~~~~~~-~G~i~~~ 118 (126)
T cd04046 77 -DEFLGQATLSADPND--SQTLRTLPLRKRGR--DAAGEV-PGTISVK 118 (126)
T ss_pred -CCceEEEEEecccCC--CcCceEEEcccCCC--CCCCCC-CCEEEEE
Confidence 799999999999863 33445677762221 222233 8999984
No 109
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.53 E-value=4.6e-14 Score=132.03 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=89.3
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEe-eCc--eeEEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-FEV--VQTLVFRIYD 121 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~-fe~--~q~L~~~VyD 121 (561)
..+++++ ++|+||+.+|..+.+||||+|++.+. +......||+++++|+||.|+++|.|... .+. ...|+|.|||
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 3567777 69999999999999999999998652 22346899999999999999999988642 222 2479999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|.. +++++||++.+++.++........|++|..
T Consensus 105 ~d~~-----------~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKL-----------SSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCC-----------CCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9865 679999999999999987666778888754
No 110
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.53 E-value=2.9e-14 Score=130.10 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=77.7
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
-+.+++|.||...|+.++||||+++.+.+ +..||.++++++||+||+ |.|++ .+...+|+++|||+|.++
T Consensus 9 ~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v---~d~~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 9 RVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYKNLNPEWNEELTFTV---KDPNTPLKVTVYDKDTFS 79 (168)
T ss_pred EEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecCCCCCcccceEEEEe---cCCCceEEEEEEeCCCCC
Confidence 34578999999999989999999999865 467999999999999998 77777 466899999999999999
Q ss_pred CCceeEEEEEehhhHhh
Q 008558 283 KHDLIGKVQKSLADLEK 299 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~ 299 (561)
.||+||.++++|..+..
T Consensus 80 ~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 80 SDDFMGEATIPLKPLLE 96 (168)
T ss_pred cccccceeeeccHHHHH
Confidence 99999999999999964
No 111
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.53 E-value=3.5e-14 Score=127.15 Aligned_cols=90 Identities=22% Similarity=0.386 Sum_probs=77.1
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEE-EeeCceeEEEEEEEEccC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEVVQTLVFRIYDVDT 124 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~-~~fe~~q~L~~~VyD~D~ 124 (561)
.+++++ ++|++|+ .|..+++||||+|++.+ .+.||+++++++||+|+|+|.|. ..++..+.|+|+|||+|.
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~------~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGG------QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCCCCeEEEEEECC------ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 567777 5899998 57889999999999854 38899999999999999999886 345567899999999997
Q ss_pred CcccccccccccccceeeeeeEeechhhhc
Q 008558 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVT 154 (561)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~~~L~el~~ 154 (561)
. +++++||++.++|.....
T Consensus 101 ~-----------s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 G-----------WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred C-----------CCCCeeEEEEEEecCCce
Confidence 5 689999999999997763
No 112
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.53 E-value=1.1e-13 Score=124.01 Aligned_cols=116 Identities=17% Similarity=0.296 Sum_probs=88.8
Q ss_pred ceeEeeecCCCcCCC--CCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 204 TELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 204 v~~~i~a~nL~~~d~--~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
.+.+++|++|+.++. .+.+|||++++... ..++|+++++++||.|++ |.+.... .....|.|+|||++.
T Consensus 4 ~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~ 75 (128)
T cd04024 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR 75 (128)
T ss_pred EEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC
Confidence 455789999999998 89999999998732 468999999999999998 7776653 236789999999999
Q ss_pred CCCCceeEEEEEehhhHhh---ccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 281 NGKHDLIGKVQKSLADLEK---LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~---~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.+++++||++.+++.++.. ......+++|...+. + +++.. +|+|+|+
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~-~~~~~-~G~i~l~ 125 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-G-KTSVV-SGEIHLQ 125 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCccc-C-ccccc-cceEEEE
Confidence 8899999999999999962 111234566554321 2 22233 8999984
No 113
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=4.4e-14 Score=126.34 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=95.8
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceee-eeec
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-IQQV 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~-~~~l 264 (561)
.|+|.++..+......+.+.+++|+||+.++..|.+|||++++..... ...+||+++++ +||+||| |.++ ...-
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC-CCCcccCEEEECCCCHH
Confidence 589999999988889999999999999999998999999999886632 25789999888 9999999 6665 2211
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
.-.+..|.|+|||++..+++++||++.++|+++........|++|
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 112578999999999999999999999999999632233345544
No 114
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.52 E-value=1.5e-13 Score=123.06 Aligned_cols=102 Identities=29% Similarity=0.439 Sum_probs=83.7
Q ss_pred cEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 47 ~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
+.++++|.+.+|...+..+++||||+|++.. . ..+||+++++++||.|++.|.+.+. ..+.|.|+|||.+..
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~---~--~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~- 73 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDG---Q--PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTL- 73 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECC---c--ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCC-
Confidence 5688887666688888889999999999854 1 4789999999999999999988764 457999999999865
Q ss_pred ccccccccccccceeeeeeEeechhhhccCC-----eeEEEEccc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKN-----RSLTLDLVR 166 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~-----~~~~~~L~~ 166 (561)
+++++||++.++|.++....+ ...|++|..
T Consensus 74 ----------~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 108 (125)
T cd04021 74 ----------KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSS 108 (125)
T ss_pred ----------CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence 689999999999999986543 234677754
No 115
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=4.5e-14 Score=128.23 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=95.8
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
+|+|.++..+......+.+.+++|+||+.++.+|.+|||+++++... +.....+||+++++++||.||+ |.|.+..-.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-DKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 48899999988888889999999999999999999999999998642 3344578999999999999998 555432101
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
-.+..|.|+|||++..+++++||++.+++.+. ......|.+++.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 12467999999999999999999999999876 222234445544
No 116
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=7.9e-14 Score=126.07 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=85.4
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEc
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~ 122 (561)
...+.++ ++|++|+++|..+.+||||+|++.+ ++.+....||+++++++||+|+++|.|.+..+. .+.|+|+|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKP-DAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEc-CCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 3566776 6999999999999999999999986 333456789999999999999999999876543 35899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
|.. +++++||++.+++.+. ......|+++..
T Consensus 91 d~~-----------~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 91 DIG-----------KSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred CCC-----------CCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 865 6789999999999752 222345766643
No 117
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.52 E-value=8.4e-14 Score=124.44 Aligned_cols=102 Identities=22% Similarity=0.364 Sum_probs=84.7
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeec-CCCCCceeeeEEEEEeeCc----eeEEEEEEEEc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEV----VQTLVFRIYDV 122 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~-n~lNP~w~e~f~i~~~fe~----~q~L~~~VyD~ 122 (561)
++++ ++|++|+..+..+++||||+|++... ...+|.+++ +++||.|++.|.|.+.... .+.|+|+|||.
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~-----~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS-----HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCC-----cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 4555 69999999999999999999999641 367999985 5899999999999876553 57999999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCe-----eEEEEccc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR-----SLTLDLVR 166 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~-----~~~~~L~~ 166 (561)
+.. +++++||++.++|.++...... ..|++|..
T Consensus 77 ~~~-----------~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 77 RPS-----------LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCC-----------CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 864 5789999999999999875542 57888865
No 118
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.52 E-value=8.4e-14 Score=121.75 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=80.0
Q ss_pred ceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCce-ec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 204 TELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 204 v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W-~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
.+.+++|++|+.++ ..|.+|||++++... ..+||+++++++||.| +| |.+....-.-..+.|.|+|||++.
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 45689999999998 478999999999842 5799999999999999 77 555442111124689999999999
Q ss_pred CCCCceeEEEEEehhhHhhc---cCCCceeeeec
Q 008558 281 NGKHDLIGKVQKSLADLEKL---HSSGQGQNLFL 311 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~---~~~~~~~~l~n 311 (561)
.+++++||++.+++.++... .....||+|++
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999999999641 12345777654
No 119
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=1.1e-13 Score=127.94 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=85.1
Q ss_pred CCcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCC-------c----------------eeeEeeeeeecCCCCCc
Q 008558 43 LGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDG-------A----------------LVEVGRTEVVLNSLNPT 98 (561)
Q Consensus 43 ~~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~-------~----------------~~~~~rTevi~n~lNP~ 98 (561)
.++.-.++++ ++|++|.++|..|.+||||+|++.+... + ...+.||+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 3444666665 7999999999999999999999864211 0 12568999999999999
Q ss_pred eeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 99 WITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 99 w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
|+++|.|.+.....+.|.|+|||+| ++|||++.+++.++.. .+...|++|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---------------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---------------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---------------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999998876545679999999975 4699999999999984 456778876
No 120
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.51 E-value=8.1e-14 Score=122.08 Aligned_cols=93 Identities=22% Similarity=0.357 Sum_probs=76.5
Q ss_pred cceeEeeecCCCcCCCC-CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-CCCCccEEEEEEecc
Q 008558 203 TTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 279 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~-g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~d~~~~L~ieV~D~d 279 (561)
+.+.+++|++|+.+|.+ +++|||++++.... + ..+++|+++++++||.|++ |.+..... ......|.|+|||++
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 45568899999999988 99999999998542 2 3468999999999999998 55543211 123568999999999
Q ss_pred CCCCCceeEEEEEehhhHh
Q 008558 280 SNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~ 298 (561)
..+++++||++.+++.+|.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 80 RFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCcceEEEEEHHHHh
Confidence 9999999999999999995
No 121
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.51 E-value=3e-14 Score=129.31 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=87.6
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--eec
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--QQV 264 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~~l 264 (561)
|+|.+++.+.+....+.+.+++|++|+.+|.+|.+|||+++++.. +++....++|+++++++||.||| |.|.+ ..+
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 678888888888888888899999999999999999999999854 23345578999999999999998 55544 222
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
. ...|.|+|||++..+++++||++.+.....
T Consensus 80 ~--~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 E--NVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred C--CCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 2 357999999999999999999998765433
No 122
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.51 E-value=8.9e-14 Score=120.54 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=82.0
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+..|..+.+||||++++.+ ...||+++++++||.|++.|.|.+.....+.|.|+|||.+
T Consensus 7 ~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------- 71 (105)
T cd04050 7 DSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------- 71 (105)
T ss_pred eeecCCCCcccCCCCCcEEEEEECC------EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC---------
Confidence 6999999999999999999999964 5889999999999999999999887666779999999976
Q ss_pred ccccccceeeeeeEeechhhhccC--CeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRK--NRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~--~~~~~~~L~~ 166 (561)
. +++||++.++|.++.... ....|++|.+
T Consensus 72 ----~-~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 72 ----T-GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ----C-CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 2 679999999999998654 3457999965
No 123
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=1.2e-13 Score=123.93 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=85.3
Q ss_pred eEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCC
Q 008558 206 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH 284 (561)
Q Consensus 206 ~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~ 284 (561)
++++|++|+. .+|++|||++++... ..++|++++++.||.|++ |.++..........|.|+|||++..+++
T Consensus 1 ~vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d 72 (127)
T cd08373 1 LVVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRN 72 (127)
T ss_pred CeEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCC
Confidence 4689999998 789999999999843 358999999999999997 7777643323468899999999999999
Q ss_pred ceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEE
Q 008558 285 DLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 285 d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
++||++.++++++........+++|.+++.+. ..|.|++
T Consensus 73 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~------~~~~l~l 111 (127)
T cd08373 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSNGRP------TGATISL 111 (127)
T ss_pred ceEEEEEEEhhHcccCCceEEEEeCcCCCCCc------ccEEEEE
Confidence 99999999999996422223467776544211 1577776
No 124
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.51 E-value=1e-13 Score=125.44 Aligned_cols=98 Identities=24% Similarity=0.242 Sum_probs=81.1
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCC-ceeeEeeeeeecCCCCCceeeeEEEEEeeC----ceeEEEEEEE
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDG-ALVEVGRTEVVLNSLNPTWITKHIITYQFE----VVQTLVFRIY 120 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~-~~~~~~rTevi~n~lNP~w~e~f~i~~~fe----~~q~L~~~Vy 120 (561)
..+.+. ++|++|+.+|..+.+||||+|++.+... ......||+++++|+||+|+|+|.+.+..+ ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 456665 7999999999999999999999875221 124689999999999999999999887643 2458999999
Q ss_pred EccCCcccccccccccccceeeeeeEeechhhhcc
Q 008558 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (561)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~ 155 (561)
|+|.. +++++||++.++|.++..-
T Consensus 96 d~d~~-----------~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 96 DYDLL-----------GSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred ecCCC-----------CCCcEeEEEEEeHHHCCcc
Confidence 99865 6799999999999999753
No 125
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.50 E-value=1.9e-13 Score=121.99 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=87.4
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+.++.++.+|||++++..+ ..++||+++++++||.|++ |.+... ....|.|+|||++..+
T Consensus 3 ~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~kT~v~~~t~nP~Wne~f~~~~~----~~~~l~i~V~d~~~~~ 73 (123)
T cd08382 3 RLTVLCADGLAKRDLFRLPDPFAVITVDG-----GQTHSTDVAKKTLDPKWNEHFDLTVG----PSSIITIQVFDQKKFK 73 (123)
T ss_pred EEEEEEecCCCccCCCCCCCcEEEEEECC-----ccceEccEEcCCCCCcccceEEEEeC----CCCEEEEEEEECCCCC
Confidence 45678999999999999999999999842 3578999999999999997 777763 1679999999999887
Q ss_pred C--CceeEEEEEehhhHhhccCC-CceeeeecccccCCCCcccccccEEEe
Q 008558 283 K--HDLIGKVQKSLADLEKLHSS-GQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 283 ~--~d~IG~~~i~l~~l~~~~~~-~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+ +++||++.+++.+|...... ..++++...++. ...+ ..|.|.++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~-~~~~--~~G~v~~~ 121 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKS-DNLS--VRGKIVVS 121 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCC-CCce--EeeEEEEE
Confidence 5 58999999999999643333 346666443321 1111 26877763
No 126
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.50 E-value=1.6e-13 Score=119.60 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=73.5
Q ss_pred cceeEeeecCCCcCCCC----CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEe
Q 008558 203 TTELILRCSDLDCKDLF----SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFN 277 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~----g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D 277 (561)
+.+.+++|++|+..|.. +.+|||+++++.. ..+||+++++++||+||+ |.+.+.. .+....|.|+|||
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~-~~~~~~L~~~V~D 75 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYP-HEKNFDIQFKVLD 75 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecCCCCCcccceEEEEEeC-ccCCCEEEEEEEE
Confidence 34568899999998743 3589999999832 468999999999999998 5555532 2235689999999
Q ss_pred ccCCCCCceeEEEEEehhhHhh
Q 008558 278 FNSNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 278 ~d~~g~~d~IG~~~i~l~~l~~ 299 (561)
++..++|++||++.++|++|..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHh
Confidence 9999999999999999999964
No 127
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=2.1e-13 Score=122.94 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=97.6
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~ 265 (561)
+|+|.++.++.. ..+.+.+++|++|+..+..+.+|||+++..... +.....++|++++++.+|.|++ |.+.... +
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~-~ 76 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKP-A 76 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCc-h
Confidence 488888876543 556777999999999998899999999998643 2234679999999999999998 7666432 2
Q ss_pred CCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 266 d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
+....|.|+|||++..+++++||++.+++.++.. .....|++|++++
T Consensus 77 ~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~w~~L~~~~ 123 (131)
T cd04026 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQE 123 (131)
T ss_pred hcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCc-CccCceEECcCcc
Confidence 2457899999999988899999999999999963 3445688887754
No 128
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.50 E-value=1.4e-13 Score=122.60 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=84.8
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC---ceeEEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYD 121 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe---~~q~L~~~VyD 121 (561)
..+++++ ++|++|++.|..+.+||||++++.+. ..+....||+++++++||.|++.|.+..... ..+.|.|+|||
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 3567776 69999999999999999999998652 2345689999999999999999998753322 24689999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEE
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLD 163 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~ 163 (561)
.+.. ++++||++.++|.+|..+..+.+|+.
T Consensus 93 ~~~~------------~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 93 EDRF------------GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred cCCc------------CCeeEEEEEEEcccCCCCcceEeecc
Confidence 8752 68899999999999998766655543
No 129
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.50 E-value=2.8e-13 Score=125.05 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=84.7
Q ss_pred EEEE-EEEcC--CCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--------eeEEEE
Q 008558 49 IELS-FSAAD--LRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--------VQTLVF 117 (561)
Q Consensus 49 vel~-isa~~--L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--------~q~L~~ 117 (561)
.||+ +.|++ |+..+..+.+||||++++.-+.. .....||.++++|+||+|+|.|.|...... .+.|+|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~-~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNE-EPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCC-CCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 5666 46777 77888788999999999743111 236899999999999999999988765432 357999
Q ss_pred EEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 118 ~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|||.+..+ .+|++||++.++|..+........|++|..
T Consensus 83 ~V~d~~~f~----------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 83 EVYHKGGFL----------RSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEEeCCCcc----------cCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 999998641 479999999999999987766667899864
No 130
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.50 E-value=3e-13 Score=122.78 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=72.5
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCce--------eeEEEceeecCCCCCce-ec-ceeeeeecCCCCccEEE
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTH--------IPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLII 273 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~--------~~~~kTevik~tlnP~W-~e-f~~~~~~l~d~~~~L~i 273 (561)
.+.+++|+||+ ++.+|++|||+++++... +++ .+.+||+++++++||+| ++ |.+... .+..|.|
T Consensus 4 ~~~~~~A~~L~-~~~fg~~DPyvki~~~~~-~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~----~~~~L~v 77 (137)
T cd08691 4 SLSGLQARNLK-KGMFFNPDPYVKISIQPG-KRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL----PTDVLEI 77 (137)
T ss_pred EEEEEEeCCCC-CccCCCCCceEEEEEECC-CcccccccccccceeeeeeEcCCCCCceEceEEEEEcC----CCCEEEE
Confidence 45689999998 788999999999999652 222 35799999999999999 76 554442 3568999
Q ss_pred EEEeccCCCC---CceeEEEEEehhhHhh
Q 008558 274 ECFNFNSNGK---HDLIGKVQKSLADLEK 299 (561)
Q Consensus 274 eV~D~d~~g~---~d~IG~~~i~l~~l~~ 299 (561)
+|||++..++ +++||++.+++.++..
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~ 106 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLE 106 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcc
Confidence 9999876544 6999999999999963
No 131
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=1.4e-13 Score=123.02 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=87.7
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEE-EeeCc--eeEEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEV--VQTLVFRIYD 121 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~-~~fe~--~q~L~~~VyD 121 (561)
..++.++ ++|+||+++|..+.+||||++++.+... ...||+++++ +||+|+|+|.|. ...+. ...|+|.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~---~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK---QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc---ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 4667777 6999999999999999999998876332 4779999988 999999999987 44332 4589999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
+|.. +++++||++.++|.++........|++|+
T Consensus 91 ~~~~-----------~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERM-----------RKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCc-----------ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9865 68999999999999997777778999985
No 132
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.49 E-value=2e-13 Score=121.87 Aligned_cols=101 Identities=30% Similarity=0.474 Sum_probs=85.8
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecC-CCCCceeeeEEEEEeeC---ceeEEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n-~lNP~w~e~f~i~~~fe---~~q~L~~~VyD~D 123 (561)
++++ ++|++|++.|..+++||||+|++.. ...+|+++++ ++||.|++.|.+.+... ..+.|.|+|||.+
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 5565 6999999999999999999999853 4679999885 89999999999887655 3579999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.. +++++||++.++|.++........|++|..
T Consensus 77 ~~-----------~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NF-----------SDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cC-----------CCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 65 678999999999999988777778888865
No 133
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=1.8e-13 Score=122.00 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=90.1
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l- 264 (561)
.|+|.+...+......+.+.+++|++|++.+.++.+|||++++.... ..+...+||+++++++||.|++ |.+.....
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 38899988888887888888999999999999999999999998652 2335689999999999999998 55432111
Q ss_pred CCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 265 ~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
.-....|.|+|||++.. .+++||++.+++.+|.
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLK 112 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCC
Confidence 11246899999999987 7899999999999995
No 134
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=1.4e-13 Score=125.37 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=92.3
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d 266 (561)
|+|.++..+....+.+.+.+++|+||+.++..|.+|||+++++...+++....+||+++++++||+||| |.|++..-.-
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 578888888888888999999999999999999999999999987555555678999999999999999 6655432111
Q ss_pred CCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
.+..|.|+|||++..+++++||++.+.+...
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 3578999999999999999999999988754
No 135
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.49 E-value=1.6e-13 Score=122.70 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=76.7
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+++|..+++||||+|++.+. ....||+++++++||.|++.|.+.+.....+.|.|+|||+|..
T Consensus 7 i~a~~L~~~d~~g~~DPYv~v~~~~~----~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~------- 75 (124)
T cd04037 7 VRARNLQPKDPNGKSDPYLKIKLGKK----KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLL------- 75 (124)
T ss_pred EECcCCCCCCCCCCCCcEEEEEECCe----eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCC-------
Confidence 79999999999999999999998541 2457999999999999999999988777778999999999865
Q ss_pred ccccccceeeeeeEeechhhhc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVT 154 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~ 154 (561)
+++++||++.++|.+...
T Consensus 76 ----~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 ----GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred ----CCCceeEEEEEeeccccc
Confidence 689999999999987764
No 136
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1.8e-13 Score=124.46 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=85.9
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC---------------ceeEEEE
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---------------VVQTLVF 117 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe---------------~~q~L~~ 117 (561)
++|++|+.+ ..+++||||+|++... .+....||+++++++||.|++.|.+..... ..+.|+|
T Consensus 6 i~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i 82 (137)
T cd08675 6 LECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRV 82 (137)
T ss_pred EEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEE
Confidence 799999999 7899999999999752 334689999999999999999998876543 4568999
Q ss_pred EEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 118 ~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|||.+.. ++++|||++.++|.++........|++|.+
T Consensus 83 ~V~d~~~~-----------~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 83 ELWHASMV-----------SGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred EEEcCCcC-----------cCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 99999865 689999999999999987666778999976
No 137
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.49 E-value=5e-13 Score=120.73 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=83.5
Q ss_pred EEEEE-EEEcCCCCCCCC----------CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEE
Q 008558 48 QIELS-FSAADLRDRDVL----------SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLV 116 (561)
Q Consensus 48 ~vel~-isa~~L~~~D~~----------sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~ 116 (561)
.+++. ++|++|++.|.. +.+||||++++.+ ....+|+++++++||.|+|+|.+.+. ....|.
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~ 77 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-----THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLE 77 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-----EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEE
Confidence 35565 699999999863 6899999999953 14689999999999999999998875 346899
Q ss_pred EEEEEccCCcccccccccccccceeeeeeEeechhhhc--cCCeeEEEEccc
Q 008558 117 FRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT--RKNRSLTLDLVR 166 (561)
Q Consensus 117 ~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~--~~~~~~~~~L~~ 166 (561)
|.|||.+.. +++++||++.++|.++.. ......|++|..
T Consensus 78 ~~v~d~~~~-----------~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 78 LTVFHDAAI-----------GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP 118 (132)
T ss_pred EEEEeCCCC-----------CCCceEEEEEEEhHHhcccCCCcccEEEEccC
Confidence 999998854 678999999999999987 445678999843
No 138
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=4.3e-14 Score=128.42 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=85.2
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
.++.++ ++|++|+.+|..+.+||||++++.+. +......||+++++++||.|+|+|.|.+..+. ...|.|+|||+|
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-KKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-CceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 456665 79999999999999999999999752 44445789999999999999999998876543 347899999999
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.. +++++||++.+++.. . ..+...|++|..
T Consensus 94 ~~-----------~~~~~iG~~~~~~~~-~-~~~~~~w~~l~~ 123 (136)
T cd08404 94 RV-----------TKNEVIGRLVLGPKA-S-GSGGHHWKEVCN 123 (136)
T ss_pred CC-----------CCCccEEEEEECCcC-C-CchHHHHHHHHh
Confidence 65 689999999999987 2 334456777643
No 139
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.49 E-value=2.7e-13 Score=121.76 Aligned_cols=112 Identities=13% Similarity=0.243 Sum_probs=84.7
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.+|.+|.+|||++++... ..++|+++++++||.|++ |.+... .....|.|+|||+|..
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~---~~~~~l~i~v~d~d~~ 73 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECH---NSSDRIKVRVWDEDDD 73 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEec---CCCCEEEEEEEECCCC
Confidence 345689999999999999999999999732 368999999999999998 665542 2356899999999853
Q ss_pred -----------CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 -----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 -----------g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+.+++||++.+++.++. .....|++|.....+.+ .+|.|.+.
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~-----~~G~i~~~ 126 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSA-----VSGAIRLH 126 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCc-----EeEEEEEE
Confidence 57899999999999984 33445666643221111 28988873
No 140
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=1.3e-13 Score=125.23 Aligned_cols=110 Identities=18% Similarity=0.284 Sum_probs=85.6
Q ss_pred CCCcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEE
Q 008558 42 YLGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFR 118 (561)
Q Consensus 42 ~~~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~ 118 (561)
++....++++. ++|++|+.+|..+++||||+|++.+ .++.....||+++++++||.|++.|.|.+..+.. ..|+|+
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 33444667776 6899999999999999999999875 3344467899999999999999999988765442 379999
Q ss_pred EEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 119 VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
|||+|.. +++++||++.+++... ..+...|.++.
T Consensus 89 v~d~~~~-----------~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 89 VLDYDRI-----------GKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred EEeCCCC-----------CCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 9999965 6899999999998653 22223455553
No 141
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=2.9e-13 Score=122.01 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=88.6
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC-ceeEEEEEEEEccC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDT 124 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe-~~q~L~~~VyD~D~ 124 (561)
..+.+. ++|++|+..|..+.+||||.|++.+. +.....+||+++++++||.|+++|.+.+... ..+.|+|.|||.+.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 345555 69999999999999999999999752 2234689999999999999999999886543 35689999999886
Q ss_pred CcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
. +++++||++.++|.++... ....|++|.+
T Consensus 92 ~-----------~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 T-----------TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred C-----------CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 4 6889999999999999865 5668999976
No 142
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=3.1e-13 Score=124.57 Aligned_cols=90 Identities=24% Similarity=0.330 Sum_probs=75.6
Q ss_pred EEE-EEEcCCCCCCCCC--------------CCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee-Ccee
Q 008558 50 ELS-FSAADLRDRDVLS--------------KSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-EVVQ 113 (561)
Q Consensus 50 el~-isa~~L~~~D~~s--------------ksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-e~~q 113 (561)
.++ ++|++|+++|..+ .+||||+|.+.+ +..||+++++++||+|+|+|.|.... +..+
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcCCCCCCcceEEEEEeeCCCcCC
Confidence 344 6999999999654 789999999864 35699999999999999999987544 3346
Q ss_pred EEEEEEEEccCCcccccccccccccceeeeeeEeechhhhccC
Q 008558 114 TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 114 ~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
.|.|+|||+|.. +++++||++.++|.++....
T Consensus 77 ~l~~~v~D~d~~-----------~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 77 RIKIQIRDWDRV-----------GNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEEECCCC-----------CCCCEEEEEEEeHHHhccCC
Confidence 999999999975 68999999999999997754
No 143
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.47 E-value=2.9e-13 Score=124.12 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=77.6
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
+.++ ++|++|+..|. +.+||||++++.. +..||+++++++||.|+|.|.|..... .+.|+|+|||+|..
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~-- 73 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTF-- 73 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCC--
Confidence 4554 69999999998 8999999999854 578999999999999999998886543 67999999999975
Q ss_pred cccccccccccceeeeeeEeechhhhccC
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
+++++||++.+++.++....
T Consensus 74 ---------~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 74 ---------SKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred ---------CCCCEEEEEEEEHHHhhhhh
Confidence 68999999999999998654
No 144
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.46 E-value=5.5e-13 Score=118.16 Aligned_cols=108 Identities=21% Similarity=0.351 Sum_probs=84.3
Q ss_pred ceeEeeecCCCcCCC------CCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEE
Q 008558 204 TELILRCSDLDCKDL------FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 276 (561)
Q Consensus 204 v~~~i~a~nL~~~d~------~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~ 276 (561)
.+.+++|+||+.+|. .|.+|||++++... ..++|+++++++||.|++ |.+.... .....|.|+||
T Consensus 4 ~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v~ 75 (121)
T cd08391 4 RIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIELF 75 (121)
T ss_pred EEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEEE
Confidence 455889999999885 36899999999842 579999999999999998 6665532 23678999999
Q ss_pred eccCCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 277 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 277 D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
|++.. ++++||++.+++.++........+++|.... .|.|++.
T Consensus 76 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~----------~G~~~~~ 118 (121)
T cd08391 76 DEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVK----------SGRLHLK 118 (121)
T ss_pred ecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCCC----------CceEEEE
Confidence 99987 8899999999999997433334566665321 7888774
No 145
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.46 E-value=5.3e-13 Score=118.61 Aligned_cols=100 Identities=22% Similarity=0.350 Sum_probs=83.5
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~ 127 (561)
++++ ++|++|++.|..+++||||+|++.. ...++|+++++++||.|++.|.+..... .+.|+|+|||.+..
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~-- 74 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG-----IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKV-- 74 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC-----EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCC--
Confidence 4455 6999999999999999999999843 1579999999999999999998866543 46999999999865
Q ss_pred cccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+++++||++.++|.++... ....|+.|.+
T Consensus 75 ---------~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 75 ---------GKDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ---------CCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 6789999999999999876 4456777654
No 146
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.46 E-value=4.1e-13 Score=123.54 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=82.9
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeee-----------c-CC-CC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ-----------V-GS-KD 268 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~-----------l-~d-~~ 268 (561)
+.+.+++|+||+. .+|.+|||++++..... .....+||+++++++||+||| |.|.+.. . .+ ..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~-~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSN-KKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCc-ccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 4567899999998 67899999999987632 223568999999999999998 7666531 1 12 23
Q ss_pred ccEEEEEEeccCCCCCceeEEEEEehhhHhhc-cCCCceeeeeccc
Q 008558 269 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKL-HSSGQGQNLFLST 313 (561)
Q Consensus 269 ~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~-~~~~~~~~l~n~~ 313 (561)
..|.|+|||++..+.+++||++.+++.++... .....||+|...+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999632 2345678876543
No 147
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.46 E-value=2.8e-13 Score=122.93 Aligned_cols=92 Identities=17% Similarity=0.348 Sum_probs=75.6
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCcee--EEEEEEEEc
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDV 122 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q--~L~~~VyD~ 122 (561)
...++++ ++|++|+.+|..+.+||||+|++.+ ++.+....+|+++++++||.|+|+|.|.+..+..+ .|+|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 3567775 7999999999999999999999865 23344578999999999999999999887654433 699999999
Q ss_pred cCCcccccccccccccceeeeeeEeec
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTL 149 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L 149 (561)
|.. +++++||++.+..
T Consensus 92 d~~-----------~~~~~iG~~~l~~ 107 (135)
T cd08410 92 NVK-----------SSNDFIGRIVIGQ 107 (135)
T ss_pred CCC-----------CCCcEEEEEEEcC
Confidence 865 6899999987543
No 148
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.45 E-value=2.9e-13 Score=122.84 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=77.3
Q ss_pred cccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEE
Q 008558 45 LFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYD 121 (561)
Q Consensus 45 ~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD 121 (561)
...++.+. ++|+||+.+|..+.+||||+|++.+. +......||.++++++||+|+|+|.|.+..+. ...|+|.|||
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-GRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-CccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 34567776 69999999999999999999999863 33234679999999999999999998876543 3589999999
Q ss_pred ccCCcccccccccccccceeeeeeEeech
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLS 150 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~ 150 (561)
+|.. +++++||++.+...
T Consensus 92 ~d~~-----------~~~~~iG~v~lg~~ 109 (136)
T cd08406 92 STED-----------GKTPNVGHVIIGPA 109 (136)
T ss_pred CCCC-----------CCCCeeEEEEECCC
Confidence 9965 68999999988654
No 149
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.45 E-value=2.6e-13 Score=122.90 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=83.3
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEEEEEc
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDV 122 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~VyD~ 122 (561)
...++++ ++|++|+++|..+++||||+|++.. .+......||+++++++||.|++.|.|.+..+.. ..|.|+|||+
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMC-EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEe-CCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4567776 6999999999999999999999875 3444568899999999999999999988755433 3699999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
|.. +++++||++.+++... ..+...|+++
T Consensus 92 ~~~-----------~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 92 DRV-----------GHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CCC-----------CCCceeEEEEECCCCC--CchHHHHHHH
Confidence 965 7899999999987622 2233446555
No 150
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4e-14 Score=140.52 Aligned_cols=222 Identities=17% Similarity=0.221 Sum_probs=164.9
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc---eeEEEEEEEEccCCcccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV---VQTLVFRIYDVDTQFHNV 129 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~---~q~L~~~VyD~D~~~~~~ 129 (561)
..|++|+.+|..+.-|||+++.+.+.-++ ....||++..|++||.|+++......... ...+++.|.|.+..
T Consensus 100 ~~a~~lk~~~~~~~~d~~~~~~llpga~k-l~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~---- 174 (362)
T KOG1013|consen 100 DRAKGLKPMDINGLADPYVKLHLLPGAGK-LNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKK---- 174 (362)
T ss_pred chhcccchhhhhhhcchHHhhhcccchhh-hhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCccc----
Confidence 47899999999999999999998873222 24589999999999999998764432211 12677888888865
Q ss_pred cccccccccceeeeeeEeechhhhccCCee--EEEEccccccccccccccCCCCCCCcccceEEeecceeccccccceeE
Q 008558 130 DVKTLKLVEQQFLGEATCTLSQIVTRKNRS--LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELI 207 (561)
Q Consensus 130 ~~~~~~l~~~d~LG~~~~~L~el~~~~~~~--~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~~~v~~~ 207 (561)
...+++|+..+.+..|.....+. .|+.-.. .+..... . ..+.+|+|.++.++-...+.+++..
T Consensus 175 -------~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~l-----p~~rad~-~--~~E~rg~i~isl~~~s~~~~l~vt~ 239 (362)
T KOG1013|consen 175 -------THNESQGQSRVSLKKLKPLQRKSFNICLEKSL-----PSERADR-D--EDEERGAILISLAYSSTTPGLIVTI 239 (362)
T ss_pred -------ccccCcccchhhhhccChhhcchhhhhhhccC-----Ccccccc-c--chhhccceeeeeccCcCCCceEEEE
Confidence 57889999998888887654432 2221111 0110000 1 2267899999999888888999999
Q ss_pred eeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ce--eeeeecCCCCccEEEEEEeccCCCCC
Q 008558 208 LRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGKH 284 (561)
Q Consensus 208 i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~--~~~~~l~d~~~~L~ieV~D~d~~g~~ 284 (561)
+++..|..+|.+|.+|||+..+...+ ......+||.+.|++++|.+++ |. +....| ....+.|.|||++..+..
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pd-v~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd~~~G~s~ 316 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPD-VGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGDYDIGKSN 316 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCC-cchhhcccCcchhccCCccccccccccCCccch--hcceEEEeecccCCCcCc
Confidence 99999999999999999999998753 3345678999999999999997 43 444333 256789999999987678
Q ss_pred ceeEEEEEehhhH
Q 008558 285 DLIGKVQKSLADL 297 (561)
Q Consensus 285 d~IG~~~i~l~~l 297 (561)
+++|-+...+...
T Consensus 317 d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 317 DSIGGSMLGGYRR 329 (362)
T ss_pred cCCCccccccccc
Confidence 9999777665443
No 151
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.44 E-value=8.9e-13 Score=119.62 Aligned_cols=117 Identities=25% Similarity=0.412 Sum_probs=85.2
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-CC------CCccEEEE
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GS------KDSPLIIE 274 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l-~d------~~~~L~ie 274 (561)
+.+.+++|++|+.+|.+|.+|||++++... ..+||+++++++||.|++ |.+....+ ++ ....|.|+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 456789999999999999999999999843 368999999999999998 66654333 21 23569999
Q ss_pred EEeccCCCCCceeEEEEE-ehhhHhh---ccCCCceeeeecccccCCCCcccccccEEEeEeee
Q 008558 275 CFNFNSNGKHDLIGKVQK-SLADLEK---LHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSE 334 (561)
Q Consensus 275 V~D~d~~g~~d~IG~~~i-~l~~l~~---~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~~~~ 334 (561)
|||++..+++++||++.+ ++..+.. ......|++|.. + ++ ..|+|.+ .+++
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~--~~-----~~Geil~-~~~~ 131 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-G--GQ-----SAGELLA-AFEL 131 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-C--CC-----chhheeE-EeEE
Confidence 999999999999999986 4444431 122235666632 1 11 1899988 3443
No 152
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.44 E-value=9.5e-13 Score=116.99 Aligned_cols=101 Identities=19% Similarity=0.345 Sum_probs=83.7
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+..+.++.+|||++++... ...++|++++++.||.|++ |.++.. ...+.|.|+|||++..+
T Consensus 4 ~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~~L~v~v~d~~~~~ 75 (120)
T cd04045 4 RLHIRKANDLKNLEGVGKIDPYVRVLVNG-----IVKGRTVTISNTLNPVWDEVLYVPVT---SPNQKITLEVMDYEKVG 75 (120)
T ss_pred EEEEEeeECCCCccCCCCcCCEEEEEECC-----EEeeceeEECCCcCCccCceEEEEec---CCCCEEEEEEEECCCCC
Confidence 45578999999999999999999999832 3579999999999999998 555543 23578999999999999
Q ss_pred CCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 283 KHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
++++||++++++.++.. .....+|.+++.+
T Consensus 76 ~d~~IG~~~~~l~~l~~-~~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIK-KNEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhC-CCCCceEEecCCC
Confidence 99999999999999974 3445677777754
No 153
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.44 E-value=2.7e-13 Score=122.34 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=98.0
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d 266 (561)
|+|.+...+.+....+.+.+++|+||+..+..+.+|||+++++... +.....++|++++++.||.|++ |.|.+....-
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG-GKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC-CeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence 6788888887777788888999999999998999999999998763 3455688999999999999998 5555421111
Q ss_pred CCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeecc
Q 008558 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~ 312 (561)
....|.|+|||++..+++++||++.+++.+ . ......|+++++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~-~~~~~~W~~l~~~ 123 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS-G-GEELEHWNEMLAS 123 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC-C-CcHHHHHHHHHhC
Confidence 256899999999988899999999999999 3 4444567777664
No 154
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.43 E-value=3e-12 Score=114.55 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=92.3
Q ss_pred EEEEE-EEEcCCCCCC--CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCC-CCceeeeEEEEEeeCceeEEEEEEEEcc
Q 008558 48 QIELS-FSAADLRDRD--VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSL-NPTWITKHIITYQFEVVQTLVFRIYDVD 123 (561)
Q Consensus 48 ~vel~-isa~~L~~~D--~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~l-NP~w~e~f~i~~~fe~~q~L~~~VyD~D 123 (561)
+++++ ++|++|+.++ ..+.+||||++++......+....||+++.++. ||.|+|.|.|.........|+|+|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 45665 6999999998 688999999999975322134689999998876 9999999999887666678999999987
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 195 (561)
.. ++++||++.++|.+|... ..+++|.. ..+ +....|.|.+.++
T Consensus 83 ~~------------~~~~iG~~~~~l~~l~~g---~~~~~l~~-----------~~~--~~~~~~~l~v~~~ 126 (128)
T cd00275 83 SG------------DDDFLGQACLPLDSLRQG---YRHVPLLD-----------SKG--EPLELSTLFVHID 126 (128)
T ss_pred CC------------CCcEeEEEEEEhHHhcCc---eEEEEecC-----------CCC--CCCcceeEEEEEE
Confidence 52 688999999999999542 35778865 222 2344678877653
No 155
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.43 E-value=9.4e-13 Score=115.76 Aligned_cols=99 Identities=23% Similarity=0.371 Sum_probs=79.2
Q ss_pred eeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCC
Q 008558 205 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 283 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~ 283 (561)
+.+++|++|+..+..+.+|||++++... ..+++|++++++.+|.|++ |.+.... ...+.|.|+|||++..++
T Consensus 3 v~vi~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~~~~P~Wne~f~~~~~~--~~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 3 VDVISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKKTLNPVWNESFEVPVPS--RVRAVLKVEVYDWDRGGK 75 (115)
T ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecCCCCCcccccEEEEecc--CCCCEEEEEEEeCCCCCC
Confidence 4578999999999999999999998843 3468999999999999998 7666532 246789999999999899
Q ss_pred CceeEEEEEehhhHhhccCCCceeeee
Q 008558 284 HDLIGKVQKSLADLEKLHSSGQGQNLF 310 (561)
Q Consensus 284 ~d~IG~~~i~l~~l~~~~~~~~~~~l~ 310 (561)
+++||++.+++.++........+.+|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 999999999999996422222344443
No 156
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.43 E-value=7.3e-13 Score=120.65 Aligned_cols=98 Identities=12% Similarity=0.267 Sum_probs=81.4
Q ss_pred CCcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEEE
Q 008558 43 LGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRI 119 (561)
Q Consensus 43 ~~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~V 119 (561)
+....++.++ ++|+||+.+|..+.+||||++++.+..++.....||+++++++||+|+|+|.|....+.. ..|.|.|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 3445778887 799999999999999999999998744444456799999999999999999998765443 4899999
Q ss_pred EEccCCcccccccccccccceeeeeeEeechh
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
||.|.. +++++||++.+.+..
T Consensus 91 ~~~~~~-----------~~~~~iG~v~l~~~~ 111 (138)
T cd08408 91 YNKRKM-----------KRKEMIGWFSLGLNS 111 (138)
T ss_pred EECCCC-----------CCCcEEEEEEECCcC
Confidence 999965 689999998887753
No 157
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.43 E-value=5.4e-13 Score=121.13 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=82.8
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
..+.++ ++|++|+.+|..+++||||+|++.+. +......||+++++++||.|++.|.|.+..+. ...|.|+|||.|
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-DKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 456666 79999999999999999999998652 23335789999999999999999998866543 358999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~ 165 (561)
.. +++++||++.+++.+. +.....|.++.
T Consensus 94 ~~-----------~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 94 RL-----------SRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred CC-----------CCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 65 6889999999999875 22233455553
No 158
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=3e-13 Score=122.06 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEcc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D 123 (561)
.+++++ ++|++|+..|..+.+||||++++.+ .+.+....||++++++.||.|+++|.|.+..+. ...|+|+|||.+
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQ-GGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEc-CCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 567787 7999999999999999999999976 334556889999999999999999998876554 468999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.. +++++||++.+++.+ ...+...|++|..
T Consensus 93 ~~-----------~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 93 SV-----------GRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CC-----------CCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 65 578999999999998 4444556888754
No 159
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.42 E-value=5.6e-13 Score=121.13 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=77.2
Q ss_pred ccEEEEE-EEEcCCCCCCC--CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEE
Q 008558 46 FSQIELS-FSAADLRDRDV--LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIY 120 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~--~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~Vy 120 (561)
..++.+. ++|+||+.+|. .+.+||||+|++.+. ++.....||+++++++||+|+|.|.|....+. ...|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 3556665 69999999983 355999999999873 33346789999999999999999999877654 347999999
Q ss_pred EccCCcccccccccccccceeeeeeEeechh
Q 008558 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
|+|.. +++++||++.+.+..
T Consensus 93 d~d~~-----------~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSP-----------GQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCC-----------cCcceeceEEecCcC
Confidence 99976 789999999998853
No 160
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.42 E-value=1.4e-12 Score=116.03 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=84.4
Q ss_pred cceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 203 TTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.+.+++|++|+..+ ..+.+|||+++..... ...++|+++++++||.|++ |.+... .....|.|+|||++.
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 345688999999766 4467999999998541 3579999999999999998 555553 346789999999999
Q ss_pred CCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.+++++||++.+++.++.........+..+. +.+|. .|+|++.
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--~~~k~-----~G~i~~~ 119 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLL--RNGKP-----VGELNYD 119 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhh--cCCcc-----ceEEEEE
Confidence 8899999999999999964222211222222 11222 8999883
No 161
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.42 E-value=5.6e-13 Score=119.36 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=73.4
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+ .+.+|.+|||++++..+ .++||+++++++||+||| |.|....+ .....|+|+|||++..
T Consensus 30 L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~------~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 30 LTVTVLRATGLW-GDYFTSTDGYVKVFFGG------QEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDNG 101 (127)
T ss_pred EEEEEEECCCCC-cCcCCCCCeEEEEEECC------ccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCCC
Confidence 455678999997 47889999999999843 288999999999999998 77764333 2367899999999999
Q ss_pred CCCceeEEEEEehhhHh
Q 008558 282 GKHDLIGKVQKSLADLE 298 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~ 298 (561)
+++++||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 99999999999998763
No 162
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.42 E-value=2.2e-12 Score=120.17 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=84.3
Q ss_pred cceeEeeecCCCcCC------------------------------CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCC
Q 008558 203 TTELILRCSDLDCKD------------------------------LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKP 252 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d------------------------------~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP 252 (561)
+-+.+++|++|+++| ..|.+|||+++.... ..+.||+++++++||
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~~~nP 83 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIENSENP 83 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCCCCCC
Confidence 344567888888877 346799999999843 246799999999999
Q ss_pred ceec-ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEE
Q 008558 253 TWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 253 ~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
.||| |.+... .....|.|+|||++..+ +++||.+.++++++........|++|.+...+.. +. .|.|++
T Consensus 84 ~WnE~F~~~~~---~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~---~~-~~~l~v 153 (158)
T cd04015 84 VWNESFHIYCA---HYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPP---KP-GAKIRV 153 (158)
T ss_pred ccceEEEEEcc---CCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCC---CC-CCEEEE
Confidence 9998 666543 23467999999999876 5899999999999964333346778876533221 11 678877
No 163
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.41 E-value=1.2e-12 Score=114.67 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=78.6
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc----eeEEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV----VQTLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~----~q~L~~~VyD~D 123 (561)
|.+. ++|++|+ .+.+||||+|++.+ +..||+++++++||.|+|.|.|...... ...|+|.|||.+
T Consensus 6 l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 6 VRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred EEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 4444 6899998 57899999999964 4679999999999999999988764432 358999999998
Q ss_pred CCcccccccccccccceeeeeeEeechhhhccCCe---eEEEEccc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR---SLTLDLVR 166 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~---~~~~~L~~ 166 (561)
.. +++++||++.++|+++...... ..|++|..
T Consensus 76 ~~-----------~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 SL-----------RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cc-----------ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 65 6789999999999999766443 45888853
No 164
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.41 E-value=3.1e-12 Score=114.38 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=76.1
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.++.++.+|||++++... .....+||+++++++||.||+ |.+.+.. .....|.|+|||++..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t~~P~Wne~f~f~i~~--~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDTLNPRWDEEFELEVPA--GEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCCCCCcccceEEEEcCC--CCCCEEEEEEEECCCC
Confidence 345688999999999999999999998643 224578999999999999997 7766542 2357899999999998
Q ss_pred CCCceeEEEEEehhhHh
Q 008558 282 GKHDLIGKVQKSLADLE 298 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~ 298 (561)
+++++||++.++|.++.
T Consensus 78 ~~~~~iG~~~i~l~~~~ 94 (126)
T cd04043 78 GKHDLCGRASLKLDPKR 94 (126)
T ss_pred CCCceEEEEEEecCHHH
Confidence 89999999999999875
No 165
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.41 E-value=1.3e-12 Score=118.88 Aligned_cols=107 Identities=17% Similarity=0.275 Sum_probs=89.7
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--ee
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--QQ 263 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~~ 263 (561)
.|+|.+++.+.+....+.+.+++|+||+.++ .+.+|||+++++... ++....+||+++++++||+||| |.|.+ +.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 3889999999888888999999999999999 888999999998763 3334577999999999999998 65544 33
Q ss_pred cCCCCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 264 l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
+. ...|.|+|||++..+++++||++.+.....
T Consensus 79 l~--~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 79 LD--TASLSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred hC--ccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence 32 468999999999989999999999986544
No 166
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.41 E-value=1.2e-12 Score=120.74 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=74.2
Q ss_pred cceeEeeecCCCcCCCCC--------------CCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCC
Q 008558 203 TTELILRCSDLDCKDLFS--------------RNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 267 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g--------------~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~ 267 (561)
+.+.+++|++|+.+|..+ .+|||+++...+ ...||+++++++||+||| |.++.... ..
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~t~nPvWNE~f~f~v~~p-~~ 74 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKNSYNPEWNEQIVFPEMFP-PL 74 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcCCCCCCcceEEEEEeeCC-Cc
Confidence 356689999999998554 689999999753 245999999999999998 66664322 23
Q ss_pred CccEEEEEEeccCCCCCceeEEEEEehhhHhh
Q 008558 268 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 268 ~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~ 299 (561)
...|.|+|||+|..+++++||++.+++.++..
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 56899999999999999999999999999963
No 167
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.40 E-value=1.4e-12 Score=116.07 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=83.1
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+.+ .+|||++++... ...||+++++++||+|+| |.+....+ ....|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC
Confidence 35668999999987 799999999843 367999999999999998 77765432 357899999999976
Q ss_pred CCCceeEEEEEehhhHhhcc-----CCCceeeeecccccCCCCcccccccEEE
Q 008558 282 GKHDLIGKVQKSLADLEKLH-----SSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~-----~~~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
.+++||++.++++++.... ....|++|...+. .| .+|+|.|
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~-----~~G~i~l 115 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GR-----VGGELML 115 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-Cc-----cceEEEE
Confidence 7899999999999985211 1236777765432 22 2899987
No 168
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.40 E-value=1.6e-12 Score=120.13 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=79.7
Q ss_pred cccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCc-----------------------eeeEEEceeecCCCCCceec-
Q 008558 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGT-----------------------HIPVCKTEVLKNETKPTWKS- 256 (561)
Q Consensus 201 ~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~-----------------------~~~~~kTevik~tlnP~W~e- 256 (561)
..+.+.+++|++|..+|.+|.+|||++++....... ...+++|+++++++||.|++
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 345566899999999999999999999987532110 12468999999999999998
Q ss_pred ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeee
Q 008558 257 VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (561)
Q Consensus 257 f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l 309 (561)
|.+....+ ....|.|+|||++ +++||++.+++.++. ..+...|++|
T Consensus 108 F~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred EEEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 87777544 2578999999997 799999999999996 3344455553
No 169
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=1.8e-12 Score=115.87 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=75.1
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+++|.+|++|||++++... ....+||+++++++||.|++ |.+.... .....|.|+|||++..+
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~~kT~~v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGK----KKINDRDNYIPNTLNPVFGKMFELEATL--PGNSILKISVMDYDLLG 76 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECC----eeccceeeEEECCCCCccceEEEEEecC--CCCCEEEEEEEECCCCC
Confidence 34688999999999999999999999843 23457999999999999997 7766532 23578999999999999
Q ss_pred CCceeEEEEEehhhHh
Q 008558 283 KHDLIGKVQKSLADLE 298 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~ 298 (561)
++++||++.+++.+..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 9999999999999874
No 170
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.39 E-value=2.1e-12 Score=115.38 Aligned_cols=114 Identities=23% Similarity=0.236 Sum_probs=86.4
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeec-CCCCCceec-ceeeeeec--CCCCccEEEEEEecc
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLK-NETKPTWKS-VFLNIQQV--GSKDSPLIIECFNFN 279 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik-~tlnP~W~e-f~~~~~~l--~d~~~~L~ieV~D~d 279 (561)
.+.+++|++|+..+.++++|||++++... ...++|.+++ ++.||.|++ |.+..... ++....|.|+|||++
T Consensus 3 ~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 3 EITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred EEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 45688999999999999999999998854 2357999876 589999998 65554321 233678999999999
Q ss_pred CCCCCceeEEEEEehhhHhhccCC-----CceeeeecccccCCCCcccccccEEE
Q 008558 280 SNGKHDLIGKVQKSLADLEKLHSS-----GQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~~~~~-----~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
..+.+++||++.+++.++...... ..+|+|..+. +|. .|.|+|
T Consensus 78 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~-----~G~~~~ 125 (125)
T cd04051 78 PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKP-----QGVLNF 125 (125)
T ss_pred CCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCc-----CeEEeC
Confidence 888999999999999999743221 3456776544 332 788864
No 171
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.39 E-value=2.2e-12 Score=116.00 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=88.8
Q ss_pred eEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCC-CCceec-ceeeeeecCC
Q 008558 189 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGS 266 (561)
Q Consensus 189 ~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tl-nP~W~e-f~~~~~~l~d 266 (561)
+|.++..+.+....+.+.+++|+||++++..+..|||+++++... ++.....||+++++|+ ||+||| |.|.+.. .+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~ 79 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-GGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QE 79 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-CCcceeecCccEECCCCCceecceEEEeCCc-hh
Confidence 578888899999999999999999999865666799999999874 5556789999999995 699998 5544422 23
Q ss_pred CCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 267 ~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
.+..|.|+|||++..+++++||.+.+..+..
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 3578999999999989999999999999764
No 172
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.39 E-value=2.4e-12 Score=118.06 Aligned_cols=87 Identities=25% Similarity=0.495 Sum_probs=75.5
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|+||+..|. +.+|||+++.... +.+||+++++++||.|+| |.|... +...+|.|+|||++..
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~---~~~~~l~~~V~D~d~~ 73 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVP---NPMAPLKLEVFDKDTF 73 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEec---CCCCEEEEEEEECCCC
Confidence 4456889999999988 8999999999843 478999999999999998 776663 3477899999999999
Q ss_pred CCCceeEEEEEehhhHhh
Q 008558 282 GKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~ 299 (561)
+++++||++.+++.++..
T Consensus 74 ~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCEEEEEEEEHHHhhh
Confidence 999999999999999963
No 173
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.38 E-value=4.5e-12 Score=113.66 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=83.5
Q ss_pred ccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 202 ~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
.+.+.+++|+||+.+ +.+|||++++... .+..||++ ++++||.||| |.+.. .......|.|.|||++.
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-----~~~~kT~v-~~~~nP~WnE~f~f~~--~~~~~~~l~v~v~d~~~ 73 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNE-----VKVARTKV-REGPNPVWSEEFVFDD--LPPDVNSFTISLSNKAK 73 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECC-----EeEEEeec-CCCCCCccCCEEEEec--CCCCcCEEEEEEEECCC
Confidence 356778999999875 4689999999843 34568887 5689999998 66543 11122578999999999
Q ss_pred CCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.+++++||++.++|.++........|++|...... +.+. .|.|+|.
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~---~~~~-~G~i~l~ 119 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPL---KGGE-WGSLRIR 119 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCC---CCCc-CcEEEEE
Confidence 99999999999999999643333457777654321 1122 8999984
No 174
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.38 E-value=4.2e-12 Score=117.26 Aligned_cols=121 Identities=18% Similarity=0.116 Sum_probs=85.5
Q ss_pred EeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC------CCCccEEEEEEecc
Q 008558 207 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG------SKDSPLIIECFNFN 279 (561)
Q Consensus 207 ~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~------d~~~~L~ieV~D~d 279 (561)
...+-+|+..+..+.+|||+++++.-. +...+.+||.++++|+||+||| |.+.+.... -...+|.|+|||++
T Consensus 10 ~~~~~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~ 88 (155)
T cd08690 10 RCIGIPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKG 88 (155)
T ss_pred EeeccccCCCcCCCCCCeEEEEEEecC-CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCC
Confidence 344444778888889999999987432 2235689999999999999998 666553210 12467999999998
Q ss_pred CC-CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEeEeeeee
Q 008558 280 SN-GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESV 336 (561)
Q Consensus 280 ~~-g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~~~~~~ 336 (561)
.+ .+|++||++.++|+.+........+++|+..++ . ..|.|++ ++.+..
T Consensus 89 ~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k---~----~Gg~l~v-~ir~r~ 138 (155)
T cd08690 89 GFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK---A----TGGKLEV-KVRLRE 138 (155)
T ss_pred CcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC---C----cCCEEEE-EEEecC
Confidence 76 479999999999999964333345667764332 1 2788887 344443
No 175
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.38 E-value=4e-12 Score=111.31 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceee
Q 008558 63 VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFL 142 (561)
Q Consensus 63 ~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~L 142 (561)
..|++||||+|++.+ ...+||.++++++||.|++.|.+.......+.|.|.|||.+. + ++++|
T Consensus 9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----------~-~d~~i 71 (111)
T cd04052 9 KTGLLSPYAELYLNG-----KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----------R-HDPVL 71 (111)
T ss_pred cCCCCCceEEEEECC-----EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-----------C-CCCeE
Confidence 568999999999954 147899999999999999999887765455789999999884 2 68999
Q ss_pred eeeEeechhhhcc-CCeeEEEEccccccccccccccCCCCCCCcccceEEeeccee
Q 008558 143 GEATCTLSQIVTR-KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (561)
Q Consensus 143 G~~~~~L~el~~~-~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i 197 (561)
|++.++|.++... .....|++|.. ...|+|+++..+.
T Consensus 72 G~~~v~L~~l~~~~~~~~~w~~L~~------------------~~~G~i~~~~~~~ 109 (111)
T cd04052 72 GSVSISLNDLIDATSVGQQWFPLSG------------------NGQGRIRISALWK 109 (111)
T ss_pred EEEEecHHHHHhhhhccceeEECCC------------------CCCCEEEEEEEEe
Confidence 9999999999653 23457999854 2258898876553
No 176
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.37 E-value=4e-12 Score=115.69 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=82.7
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCC-------------CCc
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS-------------KDS 269 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d-------------~~~ 269 (561)
.+.+++|++|+.+ ..|.+|||++++.... .+...++|++++++.||.|++ |.+....... ...
T Consensus 2 ~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 2 SVRVLECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred EEEEEEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 3568999999998 8899999999998642 234678999999999999998 7766543310 356
Q ss_pred cEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 270 PLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 270 ~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
.|.|+|||++..+++++||++.+++.++........|++|..
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 899999999998899999999999999963333345666544
No 177
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.37 E-value=3.1e-12 Score=110.80 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=77.3
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|++|+..+..+.+|||+++...+ ..+||++++++.||.||+ |.|..... ....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRNP--ENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC------EEEeCccccCCCCCcccceEEEEeCCC--CCCEEEEEEEECCC-
Confidence 456789999999999899999999999843 578999999999999998 77666432 24579999999876
Q ss_pred CCCceeEEEEEehhhHhhcc--CCCceeeee
Q 008558 282 GKHDLIGKVQKSLADLEKLH--SSGQGQNLF 310 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~~~--~~~~~~~l~ 310 (561)
+++||++.++|.++.... ....||+|.
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 799999999999996321 122456654
No 178
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.36 E-value=6.6e-13 Score=135.64 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=84.2
Q ss_pred EEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee-CceeEEEEEEEEccCCccccccc
Q 008558 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-EVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 54 sa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-e~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
.|+||.+||..|.|||||.+.+.++.. -.-..+|++|+.+|||+|+|+|.+.... +..++|.++|||||..
T Consensus 188 ea~NLiPMDpNGlSDPYvk~kliPD~~-~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT------- 259 (683)
T KOG0696|consen 188 EAKNLIPMDPNGLSDPYVKLKLIPDPK-NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT------- 259 (683)
T ss_pred hhccccccCCCCCCCcceeEEeccCCc-chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc-------
Confidence 589999999999999999999987322 2357899999999999999999988765 4556999999999986
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+++||+|...+.++||+..+. .-|+.|.+
T Consensus 260 ----sRNDFMGslSFgisEl~K~p~-~GWyKlLs 288 (683)
T KOG0696|consen 260 ----SRNDFMGSLSFGISELQKAPV-DGWYKLLS 288 (683)
T ss_pred ----ccccccceecccHHHHhhcch-hhHHHHhh
Confidence 689999999999999987653 34777644
No 179
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.36 E-value=6.2e-12 Score=111.59 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=77.5
Q ss_pred EEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCc
Q 008558 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (561)
Q Consensus 48 ~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~ 126 (561)
.++++ ++|++|++++ ..||||+|.+.+ ...+|.+++++ ||.|+|.|.|.... ..+.|.|+|||.|.
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~------~k~kT~v~~~~-nP~WnE~F~F~~~~-~~~~L~v~V~dkd~-- 69 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQN------VKSTTIAVRGS-QPCWEQDFMFEINR-LDLGLVIELWNKGL-- 69 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECC------EEeEeeECCCC-CCceeeEEEEEEcC-CCCEEEEEEEeCCC--
Confidence 45565 6999998766 358999999954 57899999884 99999999987753 33459999999874
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCe--eEEEEccc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR--SLTLDLVR 166 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~--~~~~~L~~ 166 (561)
..|||||++.++|.++..+... ..|++|..
T Consensus 70 ----------~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 70 ----------IWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred ----------cCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 3799999999999999865544 68999965
No 180
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.36 E-value=7.9e-12 Score=111.91 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=71.6
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+.+.+++|+ |...+.++.+|||++++..+ . ..++|+++++++||.|++ |.+... ....|.|+|||++..
T Consensus 4 L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~---~--~~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~ 73 (125)
T cd04021 4 LQITVESAK-LKSNSKSFKPDPYVEVTVDG---Q--PPKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL 73 (125)
T ss_pred EEEEEEeeE-CCCCCcCCCCCeEEEEEECC---c--ccEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC
Confidence 344566776 66666688999999999843 2 478999999999999998 776653 257899999999999
Q ss_pred CCCceeEEEEEehhhHhh
Q 008558 282 GKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~ 299 (561)
+.+++||++.++|.++..
T Consensus 74 ~~~~~iG~~~i~l~~l~~ 91 (125)
T cd04021 74 KADVLLGEASLDLSDILK 91 (125)
T ss_pred CCCcEEEEEEEEHHHhHh
Confidence 999999999999999964
No 181
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.36 E-value=6.4e-12 Score=112.11 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=79.9
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecC-CCCCceec-ceeeeeec-CCCCccEEEEEEecc
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 279 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~-tlnP~W~e-f~~~~~~l-~d~~~~L~ieV~D~d 279 (561)
+.+.+++|++|++++.++++|||++++... ..++|+++++ ++||.|++ |.+.+... ......|.|+|||++
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 445689999999999999999999998732 3679999885 89999998 66555432 113578999999999
Q ss_pred CCCCCceeEEEEEehhhHhhccCCCceeeee
Q 008558 280 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLF 310 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~ 310 (561)
..+++++||++.+++.++........++++.
T Consensus 77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred cCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 9889999999999999997433333455543
No 182
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.34 E-value=1.7e-12 Score=118.04 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=81.0
Q ss_pred ccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCce--eEEEEEEEEc
Q 008558 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDV 122 (561)
Q Consensus 46 ~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~--q~L~~~VyD~ 122 (561)
..++.++ ++|+||+.+| .+.+||||+|++.+. ++-....||+++++++||.|+|.|.|....+.. ..|.|+|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 4667777 6999999999 889999999999863 222356799999999999999999988754433 4899999999
Q ss_pred cCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEc
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L 164 (561)
+.. +++++||++.+.......+....-|.++
T Consensus 92 ~~~-----------~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 92 GGV-----------RKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred CCC-----------CCcceEEEEEECCcccCCChHHHHHHHH
Confidence 865 6899999999875433333223335444
No 183
>PLN03008 Phospholipase D delta
Probab=99.34 E-value=1.5e-11 Score=137.15 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=105.4
Q ss_pred CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeee
Q 008558 64 LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLG 143 (561)
Q Consensus 64 ~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG 143 (561)
.++|||||+|.+.. ..++||.++++++||+|+|+|.|.+... ...|.|.|||.|.. + +++||
T Consensus 74 ~~tSDPYV~I~Lg~-----~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~-----------g-aD~IG 135 (868)
T PLN03008 74 VITSDPYVTVVVPQ-----ATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVF-----------G-AQIIG 135 (868)
T ss_pred cCCCCceEEEEECC-----cceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCcc-----------C-CceeE
Confidence 46889999999953 1478999999999999999999987653 34899999998875 3 58999
Q ss_pred eeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecceeccccccceeEeeecCCCcC-CCCCCC
Q 008558 144 EATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCK-DLFSRN 222 (561)
Q Consensus 144 ~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~-d~~g~s 222 (561)
++.++|.+|........|++|.+. .+ ...+..++|++.+.+.+-..... -++.+... +..|..
T Consensus 136 ~a~IPL~~L~~Ge~vd~Wl~Ll~~-----------~~-kp~k~~~kl~v~lqf~pv~~~~~----~~~gv~~~~~~~gvp 199 (868)
T PLN03008 136 TAKIPVRDIASGERISGWFPVLGA-----------SG-KPPKAETAIFIDMKFTPFDQIHS----YRCGIAGDPERRGVR 199 (868)
T ss_pred EEEEEHHHcCCCCceEEEEEcccc-----------CC-CCCCCCcEEEEEEEEEEcccccc----ccccccCCcCCCCCC
Confidence 999999999988778899999661 11 01244679998877655433221 11222111 345555
Q ss_pred CceEEEEEEcCCCceeeEEEceeecCCCCC
Q 008558 223 DPFLVISKIVESGTHIPVCKTEVLKNETKP 252 (561)
Q Consensus 223 DPy~~i~~~~~~g~~~~~~kTevik~tlnP 252 (561)
.-|+...+ |..+..|+-..+.++.-|
T Consensus 200 ~t~Fp~r~----g~~VtlYqdAhv~d~~~p 225 (868)
T PLN03008 200 RTYFPVRK----GSQVRLYQDAHVMDGTLP 225 (868)
T ss_pred CccccCCC----CCEeEEeccCCCCCCCCC
Confidence 55665443 344667777776665544
No 184
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.32 E-value=1.9e-11 Score=110.41 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=83.0
Q ss_pred cceeEeeecCCCcCCCC----------CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccE
Q 008558 203 TTELILRCSDLDCKDLF----------SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPL 271 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~----------g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L 271 (561)
+.+.+++|++|+..|.. |.+|||+++.... ....+|+++++++||.||| |.+.+. ..+.|
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l 76 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-----THIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL 76 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-----EEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence 34457899999988863 5799999998843 2457999999999999998 776663 25789
Q ss_pred EEEEEeccCCCCCceeEEEEEehhhHhhc--cCCCceeeeecccccCCCCcccccccEEEe
Q 008558 272 IIECFNFNSNGKHDLIGKVQKSLADLEKL--HSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 272 ~ieV~D~d~~g~~d~IG~~~i~l~~l~~~--~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.|+|||++..+.+++||++.++|.++... .....|++|. . .|.|++.
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~---~---------~G~l~l~ 125 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE---P---------QGKLHVK 125 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc---C---------CcEEEEE
Confidence 99999999888999999999999999741 2233455553 1 6888774
No 185
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.30 E-value=1.7e-11 Score=107.43 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+ +.+||||++++.+. +.....+||+++++|+||+|+|.|.+... ..+.|++.|||++......+
T Consensus 6 ~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d-- 75 (118)
T cd08686 6 HSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD-- 75 (118)
T ss_pred EeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc--
Confidence 5899995 56999999988752 22236899999999999999999988864 57799999999841100000
Q ss_pred ccccccceeeeeeEeech
Q 008558 133 TLKLVEQQFLGEATCTLS 150 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~ 150 (561)
..++|+++|.+.+.|.
T Consensus 76 --~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 76 --GEGTDAIMGKGQIQLD 91 (118)
T ss_pred --ccCcccEEEEEEEEEC
Confidence 2268999988777653
No 186
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.2e-12 Score=136.65 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=95.6
Q ss_pred cCCCCCcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEE
Q 008558 39 SRGYLGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVF 117 (561)
Q Consensus 39 ~~~~~~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~ 117 (561)
..|.+.++.+|.|+ ++|++|..+|..|+|||||.+.+.. ...||++|..+|||+|+|+|.|++... ...+++
T Consensus 287 legsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~~lnpvw~ekfhfechns-tdrikv 359 (1283)
T KOG1011|consen 287 LEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKV 359 (1283)
T ss_pred hccccccceeeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhhccchhhhhheeeeecCC-CceeEE
Confidence 35667788999998 5889999999999999999999865 467999999999999999999998754 458999
Q ss_pred EEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 118 ~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.|||.|...++.-.-.++..+|||||+..+.+..|.+. ...|+.|..
T Consensus 360 rvwded~dlksklrqkl~resddflgqtvievrtlsge--mdvwynlek 406 (1283)
T KOG1011|consen 360 RVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEK 406 (1283)
T ss_pred EEecCcccHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhh
Confidence 99999875221111123335799999999998888654 457999965
No 187
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.28 E-value=2.1e-11 Score=109.60 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=76.7
Q ss_pred CCcccEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCC-CCceeeeEEEEEeeCce-eEEEEEE
Q 008558 43 LGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSL-NPTWITKHIITYQFEVV-QTLVFRI 119 (561)
Q Consensus 43 ~~~~~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~l-NP~w~e~f~i~~~fe~~-q~L~~~V 119 (561)
.....++.+. ++|+||++++..+.+||||+|++...... ....||+++++|+ ||.|+|.|.|+...+.. -.|.++|
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~-~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL-LYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc-ceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3444556665 69999999876677899999998873333 4688999999996 69999999998766443 3777888
Q ss_pred EEccCCcccccccccccccceeeeeeEeechhh
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI 152 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el 152 (561)
||+|.. +++++||++.+...+.
T Consensus 89 ~d~~~~-----------~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 89 YSRSSV-----------RRKHFLGQVWISSDSS 110 (135)
T ss_pred EeCCCC-----------cCCceEEEEEECCccC
Confidence 888754 6899999999988653
No 188
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.28 E-value=1.2e-11 Score=108.23 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=70.6
Q ss_pred ccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecC--CCCccEEEEEEec
Q 008558 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG--SKDSPLIIECFNF 278 (561)
Q Consensus 202 ~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~--d~~~~L~ieV~D~ 278 (561)
.+.+.+++|++|+ .|.+|||+++...+ ..++|+++++++||.|++ |.|...... -.+..|.|+|||+
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 3556688999998 57899999999853 357999999999999998 655543211 1246799999999
Q ss_pred cCCCCCceeEEEEEehhhHh
Q 008558 279 NSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 279 d~~g~~d~IG~~~i~l~~l~ 298 (561)
+..+++++||++.++++++.
T Consensus 75 ~~~~~~~~iG~~~i~l~~v~ 94 (111)
T cd04011 75 RSLRSDTLIGSFKLDVGTVY 94 (111)
T ss_pred cccccCCccEEEEECCcccc
Confidence 99889999999999999995
No 189
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=3.7e-11 Score=128.59 Aligned_cols=161 Identities=18% Similarity=0.305 Sum_probs=119.2
Q ss_pred cccceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceee--e
Q 008558 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN--I 261 (561)
Q Consensus 185 ~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~--~ 261 (561)
...|+|..+..+......+.+.+++|++|+.+|..|.+|||+++|+..+. ....+|.+.++++||.|+| |.+. .
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~fnEtf~f~v~~ 227 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK---KGKFKTRVHRKTLNPVFNETFRFEVPY 227 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC---CCcceeeeeecCcCCccccceEeecCH
Confidence 55799999999999999999999999999999966789999999998853 4578999999999999999 5544 3
Q ss_pred eecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEeEeeeeeeeeee
Q 008558 262 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTFL 341 (561)
Q Consensus 262 ~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~~~~~~~~sFl 341 (561)
+.+. .+.|.+.|||+|.+++|++||++.++|..+........|.++....... ... .|+|.+.-|.+..
T Consensus 228 ~~l~--~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~---~~~-~gel~~sL~Y~p~----- 296 (421)
T KOG1028|consen 228 EELS--NRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS---EEL-AGELLLSLCYLPT----- 296 (421)
T ss_pred HHhc--cCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc---ccc-cceEEEEEEeecC-----
Confidence 3333 6899999999999999999999999998886333223355554432211 111 4788886553222
Q ss_pred eccccceeeeEEEEEccccCC
Q 008558 342 DYLAGGFELNFMVAVDFTASN 362 (561)
Q Consensus 342 dyi~gG~qi~~~vaIDfT~SN 362 (561)
.|=+.+.++=|=++..++
T Consensus 297 ---~g~ltv~v~kar~L~~~~ 314 (421)
T KOG1028|consen 297 ---AGRLTVVVIKARNLKSMD 314 (421)
T ss_pred ---CCeEEEEEEEecCCCccc
Confidence 334445555555655543
No 190
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.26 E-value=9.9e-11 Score=107.08 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=78.0
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|+.++ ||||.|.+.. ..++||.++.++.||.|+|.|.|..... ...|.|.||+.+....
T Consensus 18 ~EAk~Lp~~~-----~~Y~~i~Ld~-----~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~----- 81 (146)
T cd04013 18 IEAKGLPPKK-----RYYCELCLDK-----TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK----- 81 (146)
T ss_pred EEccCCCCcC-----CceEEEEECC-----EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc-----
Confidence 6999999876 7999999964 2689999999999999999999854332 3579999997664310
Q ss_pred ccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+..++++||.+.+++.+|........|++|..
T Consensus 82 --~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 82 --KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred --cccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 12368999999999999998777788999966
No 191
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.24 E-value=1.3e-10 Score=102.31 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=78.1
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccCCccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~~~~~~~ 130 (561)
++|++|+.. +.+||||++++.. .+.+||.++++ +||.|+++|.|....+. ...|.+.+||.+..
T Consensus 7 i~a~~l~~~---~~~dpyv~v~~~~-----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~----- 72 (117)
T cd08383 7 LEAKNLPSK---GTRDPYCTVSLDQ-----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK----- 72 (117)
T ss_pred EEecCCCcC---CCCCceEEEEECC-----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-----
Confidence 799999987 7899999999953 14689999999 99999999988776543 34677777776643
Q ss_pred ccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeec
Q 008558 131 VKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
.++.++|.+.+.. +........|++|.+ ... .....|+|++..
T Consensus 73 ------~~~~~~g~v~l~~--~~~~~~~~~w~~L~~-----------~~~--~~~~~G~l~l~~ 115 (117)
T cd08383 73 ------DRDIVIGKVALSK--LDLGQGKDEWFPLTP-----------VDP--DSEVQGSVRLRA 115 (117)
T ss_pred ------CCeeEEEEEEecC--cCCCCcceeEEECcc-----------CCC--CCCcCceEEEEE
Confidence 4567788765544 444555678999965 221 124578998865
No 192
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.23 E-value=7.2e-11 Score=104.81 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=74.8
Q ss_pred ccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 202 ~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
.+.+.+++|++|+.++. .|||+++...+ ..++|.++++ .||.||+ |.|.... .+..|.|+|||++.
T Consensus 3 ~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~------~k~kT~v~~~-~nP~WnE~F~F~~~~---~~~~L~v~V~dkd~ 69 (127)
T cd08394 3 LLCVLVKKAKLDGAPDK---FNTYVTLKVQN------VKSTTIAVRG-SQPCWEQDFMFEINR---LDLGLVIELWNKGL 69 (127)
T ss_pred eEEEEEEEeeCCCCCCC---CCCeEEEEECC------EEeEeeECCC-CCCceeeEEEEEEcC---CCCEEEEEEEeCCC
Confidence 35677899999987764 48999999843 4678999887 5999998 7777643 35569999999885
Q ss_pred CCCCceeEEEEEehhhHhhccCC--Cceeeee
Q 008558 281 NGKHDLIGKVQKSLADLEKLHSS--GQGQNLF 310 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~~~~~--~~~~~l~ 310 (561)
. .|++||++.++|.++...... ..|++|.
T Consensus 70 ~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 70 I-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred c-CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 4 899999999999999743333 5677776
No 193
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.22 E-value=7.3e-11 Score=96.85 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=72.0
Q ss_pred EEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccc
Q 008558 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHN 128 (561)
Q Consensus 50 el~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~ 128 (561)
+++ ++|++|+..+..+.+||||++++..... ...+|++++++.+|.|++.|.+.......+.|.|+|||.+..
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~--- 75 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSF--- 75 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSS---
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCC---
Confidence 344 6999999999889999999999987332 579999999999999999999997777777899999999875
Q ss_pred ccccccccccceeeeeeE
Q 008558 129 VDVKTLKLVEQQFLGEAT 146 (561)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~ 146 (561)
+++++||++.
T Consensus 76 --------~~~~~iG~~~ 85 (85)
T PF00168_consen 76 --------GKDELIGEVK 85 (85)
T ss_dssp --------SSEEEEEEEE
T ss_pred --------CCCCEEEEEC
Confidence 6799999874
No 194
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.22 E-value=5.8e-11 Score=104.04 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=64.9
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEec----
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF---- 278 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~---- 278 (561)
.+.+.+|++|+ +.+|||++++.... +....++||+++++|+||+||| |.+.+. ....|.+.||||
T Consensus 2 ~V~V~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 2 NVIVHSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSK 71 (118)
T ss_pred EEEEEeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEccccc
Confidence 35678999995 56999999987542 3334689999999999999998 777763 267999999999
Q ss_pred ---cCCCCCceeEEEEEehh
Q 008558 279 ---NSNGKHDLIGKVQKSLA 295 (561)
Q Consensus 279 ---d~~g~~d~IG~~~i~l~ 295 (561)
|..++|++||.+.+.|+
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 45688999987777664
No 195
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.21 E-value=1.2e-10 Score=102.01 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhh
Q 008558 218 LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (561)
Q Consensus 218 ~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~ 296 (561)
.+|++|||++++..+ ...++|.+++++.||.||+ |.+.+. ......|.|+|||++.. ++++||++.++|++
T Consensus 9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 9 KTGLLSPYAELYLNG-----KLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred cCCCCCceEEEEECC-----EEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 678999999999843 2468999999999999998 666553 22356799999999988 88999999999999
Q ss_pred Hhhc-cCCCceeeeecccccCCCCcccccccEEEe
Q 008558 297 LEKL-HSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 297 l~~~-~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
+... .....+++|.. . . .|.|++.
T Consensus 81 l~~~~~~~~~w~~L~~-~----~-----~G~i~~~ 105 (111)
T cd04052 81 LIDATSVGQQWFPLSG-N----G-----QGRIRIS 105 (111)
T ss_pred HHhhhhccceeEECCC-C----C-----CCEEEEE
Confidence 9532 22235666653 1 1 7999874
No 196
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.20 E-value=3.1e-12 Score=136.25 Aligned_cols=287 Identities=21% Similarity=0.291 Sum_probs=187.4
Q ss_pred cCCCCCcccEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEE-E--EEeeCceeEE
Q 008558 39 SRGYLGLFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHI-I--TYQFEVVQTL 115 (561)
Q Consensus 39 ~~~~~~~~~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~-i--~~~fe~~q~L 115 (561)
+.........+++.+.|++|.++|++++||||..++-..+++.|..++|||++++||||.|.+... . .+..+...++
T Consensus 129 aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~ 208 (529)
T KOG1327|consen 129 AEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPI 208 (529)
T ss_pred eecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCce
Confidence 333344457899999999999999999999999999887788999999999999999999998742 1 2455656789
Q ss_pred EEEEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCCcccceEEeecc
Q 008558 116 VFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (561)
Q Consensus 116 ~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e 195 (561)
.+.+||+|.. ++++++|++..++.++.. .+......+.+ |.++.+++ +.+.+|++.+...
T Consensus 209 ~i~~~d~~~~-----------~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~------~~~~~~~k--~~k~~g~~~l~~~ 268 (529)
T KOG1327|consen 209 QIECYDYDSN-----------GKHDLIGKFQTTLSELQE-PGSPNQIMLIN------PKKKAKKK--SYKNSGQLILDRF 268 (529)
T ss_pred EEEEeccCCC-----------CCcCceeEecccHHHhcc-cCCcccccccC------hhhhhhhh--cccccceEEehhe
Confidence 9999999976 789999999999999975 33334444433 22221212 3456788776432
Q ss_pred eec-------------cccccceeEeeecCCCcC--------CCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCce
Q 008558 196 ECI-------------NSKTTTELILRCSDLDCK--------DLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW 254 (561)
Q Consensus 196 ~i~-------------~~~~~v~~~i~a~nL~~~--------d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W 254 (561)
... ..+-.+-+.+.|+|-.+. +. +..+||.++.+.. |+.++-|-+ +.+-|.|
T Consensus 269 ~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHyi~p-~~~N~Y~~Ai~~v--G~~lq~yds----dk~fpa~ 341 (529)
T KOG1327|consen 269 TSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHYIDP-HQPNPYEQAIRSV--GETLQDYDS----DKLFPAF 341 (529)
T ss_pred eehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcceecCC-CCCCHHHHHHHHH--hhhhcccCC----CCccccc
Confidence 211 112245578888875543 33 5677887776654 555666655 3445666
Q ss_pred ecceeeeeecCCCCccEEEEEEecc-----CCCCCceeEEEEEehhhHhhccCCCceeeeeccccc--CC-----CCccc
Q 008558 255 KSVFLNIQQVGSKDSPLIIECFNFN-----SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAA--GN-----NNHKI 322 (561)
Q Consensus 255 ~ef~~~~~~l~d~~~~L~ieV~D~d-----~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~--~K-----~~~~~ 322 (561)
. |......+. ..=..-+.+.+ -.|-+++|..++-.+..+. +.+++...|+++.--+ .+ ..|
T Consensus 342 G---FGakip~~~-~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~-l~GPTnFaPII~~va~~a~~~~~~~~qY-- 414 (529)
T KOG1327|consen 342 G---FGAKIPPDG-QVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQ-LYGPTNFSPIINHVARIAQQSGNTAGQY-- 414 (529)
T ss_pred c---ccccCCCCc-ccccceeecCCCCCCccccHHHHHHHHHhhccccc-ccCCCccHHHHHHHHHHHHHhccCCcce--
Confidence 5 211111000 00000111111 1466678888888888887 7888888888874211 11 112
Q ss_pred ccccEEEeEeeeeeeeeeeeccccceeeeE---EEEE---cccc
Q 008558 323 LNSQLFVDKFSESVQYTFLDYLAGGFELNF---MVAV---DFTA 360 (561)
Q Consensus 323 ~~G~i~l~~~~~~~~~sFldyi~gG~qi~~---~vaI---DfT~ 360 (561)
--.|+|+...+..+....|-|..-..+.| +||+ ||..
T Consensus 415 -~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~df~~ 457 (529)
T KOG1327|consen 415 -HVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDADFDM 457 (529)
T ss_pred -EEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCCCHHH
Confidence 34577788888888888888887777666 4555 5544
No 197
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.19 E-value=2.4e-10 Score=102.21 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=80.2
Q ss_pred cceeEeeecCCCcCC--CCCCCCceEEEEEEcCCCceeeEEEceeecCCC-CCceec-ceeeeeecCCCCccEEEEEEec
Q 008558 203 TTELILRCSDLDCKD--LFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d--~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tl-nP~W~e-f~~~~~~l~d~~~~L~ieV~D~ 278 (561)
+.+.+++|++|+.++ ..+..|||++++...........+||++++++. ||.|+| |.+.... .....|.|+|||+
T Consensus 4 l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~--~~~~~l~~~V~d~ 81 (128)
T cd00275 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTV--PELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeC--CCeEEEEEEEEeC
Confidence 445688999999988 688999999999876422134679999988876 999997 6666542 1235799999999
Q ss_pred cCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 279 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 279 d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
+.. ++++||++.+++.+|.. + ..+++|.++.
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~--g-~~~~~l~~~~ 112 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ--G-YRHVPLLDSK 112 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC--c-eEEEEecCCC
Confidence 987 89999999999999952 2 2455665543
No 198
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.13 E-value=3.9e-10 Score=99.24 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=75.8
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+.+ +.+|||++++... ...++|.++++ .||.|++ |.+....-......|.|.+||.+..+
T Consensus 3 ~v~vi~a~~l~~~---~~~dpyv~v~~~~-----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 3 RLRILEAKNLPSK---GTRDPYCTVSLDQ-----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred EEEEEEecCCCcC---CCCCceEEEEECC-----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 3568899999986 7899999999843 34689999999 9999998 66554211112356888888887666
Q ss_pred CCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 283 KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 283 ~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
++..+|.+.+....+ ......|++|......++ . .|+|+|.
T Consensus 74 ~~~~~g~v~l~~~~~--~~~~~~w~~L~~~~~~~~----~-~G~l~l~ 114 (117)
T cd08383 74 RDIVIGKVALSKLDL--GQGKDEWFPLTPVDPDSE----V-QGSVRLR 114 (117)
T ss_pred CeeEEEEEEecCcCC--CCcceeEEECccCCCCCC----c-CceEEEE
Confidence 667777766655443 333445777754332111 2 8999874
No 199
>PLN03008 Phospholipase D delta
Probab=99.12 E-value=2.8e-10 Score=127.19 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=76.6
Q ss_pred CCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 219 FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 219 ~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
.++||||+++.+.. ..+.||.++++++||+||| |.|+.. +....|.|+|||+|.++. ++||++.+++.+|
T Consensus 74 ~~tSDPYV~I~Lg~-----~rv~RTrVi~n~~NPvWNE~F~f~va---h~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQ-----ATLARTRVLKNSQEPLWDEKFNISIA---HPFAYLEFQVKDDDVFGA-QIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECC-----cceeeEEeCCCCCCCCcceeEEEEec---CCCceEEEEEEcCCccCC-ceeEEEEEEHHHc
Confidence 56899999999943 3467999999999999998 887764 335689999999999985 8999999999999
Q ss_pred hhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 298 EKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 298 ~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
........|++|++...+.. +. .|.|+|.
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~---k~-~~kl~v~ 173 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPP---KA-ETAIFID 173 (868)
T ss_pred CCCCceEEEEEccccCCCCC---CC-CcEEEEE
Confidence 64434446788877654321 22 6777773
No 200
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.08 E-value=1.5e-09 Score=99.25 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=79.2
Q ss_pred cccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEecc
Q 008558 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (561)
Q Consensus 201 ~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d 279 (561)
+.+.+.+++|++|+.++ +||+.+.+.. ..+-||.++.++.||.|+| |.|.. +. .-..|.|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-----~~vaRT~v~~~~~nP~W~E~F~f~~--~~-~~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK-----TLYARTTSKLKTDTLFWGEHFEFSN--LP-PVSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC-----EEEEEEEEEcCCCCCcceeeEEecC--CC-cccEEEEEEEEcc
Confidence 45677899999999865 7999999954 4567999999999999998 77643 21 2367999998654
Q ss_pred CC----CCCceeEEEEEehhhHhhccCCCceeeeeccccc
Q 008558 280 SN----GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAA 315 (561)
Q Consensus 280 ~~----g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~ 315 (561)
.. .++++||.+.+++.++........||+++..+..
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~ 117 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN 117 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence 32 2579999999999999754455679999987654
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.05 E-value=5.3e-10 Score=135.71 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=81.3
Q ss_pred cccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEecc
Q 008558 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (561)
Q Consensus 201 ~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d 279 (561)
+.+.+.+++|.||. +.+|.+|||+++...+ + +..||++++++.||.||+ |.+.++.+ ....+|.|+|||+|
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~---~~~kTkvvk~~~nP~Wne~f~~~~~~p-~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--G---PPRQTKVVSHSSSPEWKEGFTWAFDSP-PKGQKLHISCKSKN 2051 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECC--C---CcccccccCCCCCCCcccceeeeecCC-CCCCceEEEEEecC
Confidence 34667789999998 5689999999999864 2 345999999999999998 88777644 23468999999999
Q ss_pred CCCCCceeEEEEEehhhHhhccCCCceeeeec
Q 008558 280 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n 311 (561)
.+++ +.||.+++++.++........+|+|.+
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 9866 599999999999974333445677764
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.00 E-value=1.4e-09 Score=89.10 Aligned_cols=83 Identities=29% Similarity=0.432 Sum_probs=68.6
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g 282 (561)
.+.+++|++|+..+..+..|||+++....... ..++|++++++.+|.|++ |.+++... ....|.|+|||++..+
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDP--DLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHG--CGTEEEEEEEEETSSS
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecc--cccceEEEEEECCCCC
Confidence 35688999999999889999999999976322 679999999999999998 66664322 2334999999999999
Q ss_pred CCceeEEEE
Q 008558 283 KHDLIGKVQ 291 (561)
Q Consensus 283 ~~d~IG~~~ 291 (561)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 999999974
No 203
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.97 E-value=4.7e-10 Score=124.99 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=69.7
Q ss_pred eEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCC
Q 008558 206 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH 284 (561)
Q Consensus 206 ~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~ 284 (561)
.+++|-+|...|.+|++|||+++.+.. ....-+.+.+.+|+||++.+ |++.... .....++++|||+|..+.+
T Consensus 618 yvv~A~~L~p~D~ng~adpYv~l~lGk----~~~~d~~~yip~tlnPVfgkmfel~~~l--p~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 618 YVVEAFSLQPSDGNGDADPYVKLLLGK----KRTLDRAHYIPNTLNPVFGKMFELECLL--PFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred EEEEeeeccccCCCCCcCceeeeeecc----chhhhhhhcCcCCCCcHHHHHHHhhccc--chhhcceeEEEEeeccccc
Confidence 578999999999999999999998843 23345788899999999998 5443321 2256789999999999999
Q ss_pred ceeEEEEEehhh
Q 008558 285 DLIGKVQKSLAD 296 (561)
Q Consensus 285 d~IG~~~i~l~~ 296 (561)
+.||+..+.|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999998864
No 204
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.96 E-value=4.6e-09 Score=87.67 Aligned_cols=96 Identities=31% Similarity=0.439 Sum_probs=79.1
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|......+.++|||.+++.+ ...+||+++.+++||.|++.|.+.........|.|+||+.+..
T Consensus 6 ~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~------- 73 (102)
T cd00030 6 IEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRF------- 73 (102)
T ss_pred EeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCC-------
Confidence 6899998877788999999999965 2578999999999999999998887764566899999998865
Q ss_pred ccccccceeeeeeEeechhhh-ccCCeeEEEEc
Q 008558 133 TLKLVEQQFLGEATCTLSQIV-TRKNRSLTLDL 164 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~-~~~~~~~~~~L 164 (561)
.++.+||.+.+++.++. .......|++|
T Consensus 74 ----~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 ----SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ----CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 56889999999999998 44444455543
No 205
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.95 E-value=1.6e-09 Score=131.53 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=81.5
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC-ceeEEEEEEEEccCCc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQF 126 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe-~~q~L~~~VyD~D~~~ 126 (561)
+.++ ++++||. +.++.+||||++.+++. +..||+++++|.||+|++.|.+.+... ..++|+|+|||+|.+
T Consensus 1982 L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1982 LTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF- 2053 (2102)
T ss_pred eEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc-
Confidence 5555 6899998 55799999999999852 356999999999999999998665432 346899999999975
Q ss_pred ccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+ +|.||.++++|.+++.......|++|.+
T Consensus 2054 ----------~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2054 ----------G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred ----------C-CCCCceEEEEHHHHhcCceeeeeeecCc
Confidence 3 4599999999999998777778999965
No 206
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.93 E-value=9e-09 Score=86.39 Aligned_cols=90 Identities=30% Similarity=0.436 Sum_probs=75.7
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCccccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~ 132 (561)
++|++|...+..+..+|||++++.... ...+||+++.++.||.|++.|.+.......+.|+|+|||.+..
T Consensus 7 ~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~------- 76 (101)
T smart00239 7 ISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF------- 76 (101)
T ss_pred EEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc-------
Confidence 689999988877789999999997522 3589999999999999999998877655477999999998864
Q ss_pred ccccccceeeeeeEeechhhhccC
Q 008558 133 TLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 133 ~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
+++.++|.+.+++.++....
T Consensus 77 ----~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 ----GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----cCCceeEEEEEEHHHcccCc
Confidence 56899999999999887643
No 207
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.89 E-value=8.5e-09 Score=92.75 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=71.2
Q ss_pred EEEcCCCCCC--CCCC--CCcEEEEEEEcCCCceeeEeeeeeecCCCC--CceeeeEEEEEee-----------------
Q 008558 53 FSAADLRDRD--VLSK--SDPMLVVYMKARDGALVEVGRTEVVLNSLN--PTWITKHIITYQF----------------- 109 (561)
Q Consensus 53 isa~~L~~~D--~~sk--sDPyv~v~~~~~~~~~~~~~rTevi~n~lN--P~w~e~f~i~~~f----------------- 109 (561)
..|++++..+ ..|. |||||++++.+. .....+|.|..+++| |.||..|.|.+..
T Consensus 7 w~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~ 83 (133)
T cd08374 7 WNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWS 83 (133)
T ss_pred EECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccc
Confidence 5889966444 4664 999999999763 125789999999999 9999999876554
Q ss_pred ----Cc--eeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhcc
Q 008558 110 ----EV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (561)
Q Consensus 110 ----e~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~ 155 (561)
+. ...|.++|||.|.. +++|+||+++++|..+...
T Consensus 84 ~~~~e~~~~~~L~lqvwD~D~~-----------s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 84 LDETEYKIPPKLTLQVWDNDKF-----------SPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cCcceEecCcEEEEEEEECccc-----------CCCCcceEEEEEhhhcccc
Confidence 22 34899999999975 7899999999999987643
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.83 E-value=1.4e-08 Score=91.42 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=73.3
Q ss_pred cceeEeeecCCCcCC--CCCC--CCceEEEEEEcCCCceeeEEEceeecCCCC--Cceec-ceeeeeec-C---------
Q 008558 203 TTELILRCSDLDCKD--LFSR--NDPFLVISKIVESGTHIPVCKTEVLKNETK--PTWKS-VFLNIQQV-G--------- 265 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d--~~g~--sDPy~~i~~~~~~g~~~~~~kTevik~tln--P~W~e-f~~~~~~l-~--------- 265 (561)
+.++++.|++++..+ ..|. +|||++.++... .....+|.+..+++| |+||. |.++...+ .
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 456788999965543 4675 999999998763 245679999999999 99997 66555442 0
Q ss_pred -----------CCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 266 -----------SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 266 -----------d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
-....|.++|||+|..+++++||+++++|+.|.
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 124679999999999999999999999999985
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=98.75 E-value=1.2e-07 Score=102.36 Aligned_cols=102 Identities=18% Similarity=0.344 Sum_probs=79.2
Q ss_pred EEEE-EEEcCCC-C----CCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEE
Q 008558 49 IELS-FSAADLR-D----RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (561)
Q Consensus 49 vel~-isa~~L~-~----~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD 121 (561)
+.++ +++++|+ + .+..+..||||+|.+.+ .... ...||.+..|+.||.|+++|.|.....+.-.|+|+|||
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~--~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDE--KIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCc--ceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4444 5888874 1 13457889999999875 2221 35678888888999999999999888888889999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
.|.. ++++|+|++.+++..|..+- ...+|.+
T Consensus 489 ~D~~-----------~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~ 519 (537)
T PLN02223 489 YEVS-----------TADAFCGQTCLPVSELIEGI---RAVPLYD 519 (537)
T ss_pred cCCC-----------CCCcEEEEEecchHHhcCCc---eeEeccC
Confidence 9965 57899999999999997653 4568865
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.71 E-value=1.3e-07 Score=79.28 Aligned_cols=89 Identities=28% Similarity=0.420 Sum_probs=73.1
Q ss_pred eeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCC
Q 008558 205 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 283 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~ 283 (561)
+.+++|++|......+..+||+++.....+ ...++|+++.++.||.|++ |.++..... ...|.|+|||.+..+.
T Consensus 4 i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 4 VKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGR 78 (101)
T ss_pred EEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccC
Confidence 457889999888776789999999986521 4579999999999999997 666653221 6789999999998888
Q ss_pred CceeEEEEEehhhHh
Q 008558 284 HDLIGKVQKSLADLE 298 (561)
Q Consensus 284 ~d~IG~~~i~l~~l~ 298 (561)
+.++|.+.+++.++.
T Consensus 79 ~~~~G~~~~~l~~~~ 93 (101)
T smart00239 79 DDFIGQVTIPLSDLL 93 (101)
T ss_pred CceeEEEEEEHHHcc
Confidence 899999999999985
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.70 E-value=1.6e-07 Score=78.18 Aligned_cols=87 Identities=25% Similarity=0.449 Sum_probs=72.3
Q ss_pred eeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCC
Q 008558 205 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK 283 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~ 283 (561)
+.+++|++|+.....+..+||+.+.... ...++|+++.++.||.|++ |.+..... ....|.|+|||++..+.
T Consensus 3 v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 3 VTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred EEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 4577889998766677899999998854 3578999999999999997 76666421 35789999999998888
Q ss_pred CceeEEEEEehhhHh
Q 008558 284 HDLIGKVQKSLADLE 298 (561)
Q Consensus 284 ~d~IG~~~i~l~~l~ 298 (561)
+.+||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999995
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=7.3e-09 Score=111.87 Aligned_cols=128 Identities=22% Similarity=0.268 Sum_probs=94.0
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCc-------------------------eeeEeeeeeecCCCCCceeeeEEEEE
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGA-------------------------LVEVGRTEVVLNSLNPTWITKHIITY 107 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~-------------------------~~~~~rTevi~n~lNP~w~e~f~i~~ 107 (561)
..|++|.++|..|.||||+..-+.+...+ -+.+.-|+|.+.||||.|+|+|.|+.
T Consensus 121 ~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~I 200 (1103)
T KOG1328|consen 121 LEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTI 200 (1103)
T ss_pred HHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeeh
Confidence 57899999999999999999866441100 12466799999999999999999887
Q ss_pred eeCceeEEEEEEEEccCCcccccc-c------------------------ccccccceeeeeeEeechhhhccCCeeEEE
Q 008558 108 QFEVVQTLVFRIYDVDTQFHNVDV-K------------------------TLKLVEQQFLGEATCTLSQIVTRKNRSLTL 162 (561)
Q Consensus 108 ~fe~~q~L~~~VyD~D~~~~~~~~-~------------------------~~~l~~~d~LG~~~~~L~el~~~~~~~~~~ 162 (561)
..-.+..+.+.|||+|...+..+. + .++--.|||||++.++|.||-.. |...||
T Consensus 201 eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WF 279 (1103)
T KOG1328|consen 201 EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWF 279 (1103)
T ss_pred hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHh
Confidence 666667899999999875322211 0 01111389999999999999654 566799
Q ss_pred EccccccccccccccCCCCCCCcccceEEeec
Q 008558 163 DLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (561)
Q Consensus 163 ~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~ 194 (561)
.|+. ++. +.+.+|.+++..
T Consensus 280 kLep-----------RS~--~S~VqG~~~Lkl 298 (1103)
T KOG1328|consen 280 KLEP-----------RSD--KSKVQGQVKLKL 298 (1103)
T ss_pred ccCc-----------ccc--cccccceEEEEE
Confidence 9976 332 446778877654
No 213
>PLN02952 phosphoinositide phospholipase C
Probab=98.65 E-value=3e-07 Score=101.34 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=79.6
Q ss_pred EEEEE-EEEcCCCC------CCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEE
Q 008558 48 QIELS-FSAADLRD------RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRI 119 (561)
Q Consensus 48 ~vel~-isa~~L~~------~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~V 119 (561)
.+.+. +++++|+. .|..+..||||+|.+-+ .... ...||+++.||.||+|+++|.|.....+...|+|+|
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~--~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADN--AKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCC--cceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 34444 57777642 23345569999998865 1121 456999999999999999999887777777899999
Q ss_pred EEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
||+|.. +.++|+|++.+++..|..+- .+++|.+
T Consensus 549 ~D~D~~-----------~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMS-----------EKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCC-----------CCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 999865 57999999999999998653 4788865
No 214
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.56 E-value=6.5e-08 Score=108.28 Aligned_cols=90 Identities=20% Similarity=0.356 Sum_probs=75.3
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCC
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~ 125 (561)
.-|+++ ++|-+|...|..|++|||+.+.+... ....|++.+.+|+||+|.+.|.+.+.+.....|++.|||+|..
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~----~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK----RTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccc----hhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 334454 79999999999999999999998652 2356889999999999999998877666666899999999976
Q ss_pred cccccccccccccceeeeeeEeechh
Q 008558 126 FHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
+.++.+|+..++|+.
T Consensus 689 -----------~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 -----------AQDEKIGETTIDLEN 703 (1105)
T ss_pred -----------cccchhhceehhhhh
Confidence 679999999988854
No 215
>PLN02270 phospholipase D alpha
Probab=98.53 E-value=1.5e-06 Score=97.70 Aligned_cols=166 Identities=14% Similarity=0.256 Sum_probs=114.1
Q ss_pred EEEE-EEEcCCCCCCC------------------CCCCCcEEEEEEEcCCCceeeEeeeeeecCC-CCCceeeeEEEEEe
Q 008558 49 IELS-FSAADLRDRDV------------------LSKSDPMLVVYMKARDGALVEVGRTEVVLNS-LNPTWITKHIITYQ 108 (561)
Q Consensus 49 vel~-isa~~L~~~D~------------------~sksDPyv~v~~~~~~~~~~~~~rTevi~n~-lNP~w~e~f~i~~~ 108 (561)
++++ ++|++|+++|. .+.|||||.|.+.. ..++||.+|.|. .||.|+|+|.+.+.
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceEEeec
Confidence 4555 57888876421 24789999999965 279999999985 69999999998775
Q ss_pred eCceeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccccccccccccccCCCCCCC-ccc
Q 008558 109 FEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRP-KHC 187 (561)
Q Consensus 109 fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~-~~~ 187 (561)
-.. ..+.|.|-|.|.. ...+||.+.+++.+|+....-..|+++.. ..+ ++ +..
T Consensus 85 h~~-~~v~f~vkd~~~~------------g~~~ig~~~~p~~~~~~g~~i~~~~~~~~-----------~~~--~p~~~~ 138 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPI------------GATLIGRAYIPVEEILDGEEVDRWVEILD-----------NDK--NPIHGG 138 (808)
T ss_pred cCc-ceEEEEEecCCcc------------CceEEEEEEEEHHHhcCCCccccEEeccC-----------CCC--CcCCCC
Confidence 433 5899999987764 45699999999999998776778999866 121 11 223
Q ss_pred ceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCc
Q 008558 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPT 253 (561)
Q Consensus 188 G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~ 253 (561)
.+|+++..+.+-..... -.+.+...+..|...-|+...+ |..+..|+--.+.++.-|.
T Consensus 139 ~~~~~~~~f~~~~~~~~----~~~gv~~~~~~gvp~t~f~~r~----g~~vtlyqdahv~~~~~p~ 196 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRN----WGRGIRSAKFPGVPYTFFSQRQ----GCKVSLYQDAHIPDNFVPK 196 (808)
T ss_pred CEEEEEEEEEEcccCcc----hhcccCCcCcCCCCCcccccCC----CCeeEEeccccCCCCCCCc
Confidence 47888776654332211 1223333345666666775544 4456788887777765553
No 216
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.51 E-value=1.1e-06 Score=96.71 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=79.5
Q ss_pred EEEEE-EEEcCCCC------CCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEE
Q 008558 48 QIELS-FSAADLRD------RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRI 119 (561)
Q Consensus 48 ~vel~-isa~~L~~------~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~V 119 (561)
.+.+. +++++++. .+..+..||||+|.+-+ .... ...||+++.|+.||.|++.|.|....++.-.|+|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~--~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE--VMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC--cccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 34454 57777641 23456689999998865 2122 346999999999999999999988888888999999
Q ss_pred EEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|.|.. .+++|+|+..+++.+|..+- ...+|.+
T Consensus 548 ~d~d~~-----------~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~ 580 (598)
T PLN02230 548 HEHDIN-----------EKDDFGGQTCLPVSEIRQGI---HAVPLFN 580 (598)
T ss_pred EECCCC-----------CCCCEEEEEEcchHHhhCcc---ceEeccC
Confidence 999864 68999999999999997643 3567765
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.49 E-value=1.6e-06 Score=95.40 Aligned_cols=103 Identities=12% Similarity=0.161 Sum_probs=78.3
Q ss_pred EEEEE-EEEcCCC----C--CCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEE
Q 008558 48 QIELS-FSAADLR----D--RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRI 119 (561)
Q Consensus 48 ~vel~-isa~~L~----~--~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~V 119 (561)
.+.++ +++++++ . .+..+..||||+|.+.+ .... ...||+++.+|.||.|+++|.|.....+.-.|+|.|
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~--~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDT--VMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCc--ceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 35554 4666532 2 23346779999999864 1122 356999999999999999999988888888999999
Q ss_pred EEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 120 YDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 120 yD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
||.|.. +.++|+|++.+++..|..+- ...+|.+
T Consensus 531 ~d~D~~-----------~~ddfigq~~lPv~~Lr~Gy---R~V~L~~ 563 (581)
T PLN02222 531 HEYDMS-----------EKDDFGGQTCLPVWELSQGI---RAFPLHS 563 (581)
T ss_pred EECCCC-----------CCCcEEEEEEcchhhhhCcc---ceEEccC
Confidence 999864 57899999999999997643 3567765
No 218
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.4e-07 Score=99.06 Aligned_cols=112 Identities=15% Similarity=0.257 Sum_probs=82.8
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
....+++|.+|..+|--|+||||+.+.... ...||++|..++||+|+| |-|.. .+...-|++.|||.|..
T Consensus 297 itltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~~lnpvw~ekfhfec---hnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQELNPVWNEKFHFEC---HNSTDRIKVRVWDEDND 367 (1283)
T ss_pred eEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhhccchhhhhheeeee---cCCCceeEEEEecCccc
Confidence 344688999999999999999999887632 356999999999999998 65544 24467899999998853
Q ss_pred -----------CCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 282 -----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 282 -----------g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
..|||+|+..+-+..|. ..-..||.|..... | + .++|.|++.
T Consensus 368 lksklrqkl~resddflgqtvievrtls--gemdvwynlekrtd--k-s--avsgairlh 420 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTD--K-S--AVSGAIRLH 420 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccc--h-h--hccceEEEE
Confidence 46899999999888773 22234666543322 1 1 138888874
No 219
>PLN02228 Phosphoinositide phospholipase C
Probab=98.43 E-value=3e-06 Score=93.07 Aligned_cols=103 Identities=16% Similarity=0.297 Sum_probs=78.8
Q ss_pred EEEEE-EEEcCCC------CCCCCCCCCcEEEEEEEc-CCCceeeEeeeeeecCCCCCce-eeeEEEEEeeCceeEEEEE
Q 008558 48 QIELS-FSAADLR------DRDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFR 118 (561)
Q Consensus 48 ~vel~-isa~~L~------~~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w-~e~f~i~~~fe~~q~L~~~ 118 (561)
.+.+. +++++|+ ..+..+..||||+|.+.+ +.+. ...||+++.|+.||.| ++.|.|.....+.-.|+|.
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~--~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDT--VSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCC--CcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 45555 6888762 123345689999998865 2121 3569999999999999 9999998888888899999
Q ss_pred EEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 119 VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
|+|.|.. +.++|+|++.+++..|..+- ...+|.+
T Consensus 510 V~D~d~~-----------~~d~figq~~lPv~~Lr~GY---R~VpL~~ 543 (567)
T PLN02228 510 VQDYDND-----------TQNDFAGQTCLPLPELKSGV---RAVRLHD 543 (567)
T ss_pred EEeCCCC-----------CCCCEEEEEEcchhHhhCCe---eEEEccC
Confidence 9999865 57899999999999997542 3567765
No 220
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.32 E-value=1.2e-06 Score=95.25 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=87.3
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ce--eeeeecCCCCccEEEEEEecc
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFN 279 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~--~~~~~l~d~~~~L~ieV~D~d 279 (561)
+-+.+.+|+||+..+..|.+||||.+.+.+ ..++||.++.+++.|.|.| |. +|.. -+.|.|-|||.|
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~-----E~v~RT~tv~ksL~PF~gEe~~~~iP~~-----F~~l~fYv~D~d 76 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-----EEVCRTATVEKSLCPFFGEEFYFEIPRT-----FRYLSFYVWDRD 76 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecc-----hhhhhhhhhhhhcCCccccceEEecCcc-----eeeEEEEEeccc
Confidence 445577999999999999999999998865 3689999999999999997 44 4432 468999999999
Q ss_pred CCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEe
Q 008558 280 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (561)
Q Consensus 280 ~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~ 330 (561)
.++|+.||.+.+.=.+|..-.+...|+.|...... ..+.|.|++.
T Consensus 77 -~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~d-----sEVQG~v~l~ 121 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPD-----SEVQGKVHLE 121 (800)
T ss_pred -cccccccceeeeeHHHHhhCCCCccceeccccCCC-----hhhceeEEEE
Confidence 89999999999999999743444456666432211 1137888874
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.31 E-value=2.8e-06 Score=72.48 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=65.6
Q ss_pred EEEcCCCCCC---CCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccc
Q 008558 53 FSAADLRDRD---VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNV 129 (561)
Q Consensus 53 isa~~L~~~D---~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~ 129 (561)
.+|+||...+ ..+++||||.+++.+ .+..||++ +.||.|++.|.|.. +....+.+.|||....
T Consensus 6 ~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~~---- 71 (109)
T cd08689 6 TSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGGD---- 71 (109)
T ss_pred EEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCCC----
Confidence 4789999988 678999999999975 26889988 49999999998888 4566999999998753
Q ss_pred cccccccccceeeeeeEeechhhhc
Q 008558 130 DVKTLKLVEQQFLGEATCTLSQIVT 154 (561)
Q Consensus 130 ~~~~~~l~~~d~LG~~~~~L~el~~ 154 (561)
..-.+|..-+.|++|..
T Consensus 72 --------~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 --------QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred --------eecceeeehhhHHHHHH
Confidence 34578888888887764
No 222
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.31 E-value=1.1e-05 Score=75.29 Aligned_cols=152 Identities=24% Similarity=0.278 Sum_probs=106.5
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
.++++.||-|.|.+ ......+...+..++..+.. +.++-+++|+... ..-+++.
T Consensus 2 ~~v~l~vD~S~SM~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~-----~~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG----------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDA-----TVLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc----------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCc-----eEEEccc--
Confidence 46889999999753 13445555555566655554 7889999999851 1223332
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhcc-ccCCceEEEEEEeCCcccCHHHHHHHHHHccC
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-NHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~-~~~~~y~vlliltdg~i~d~~~t~~~i~~as~ 505 (561)
...+.+.+.++.....+. ..|.|.+...|+.+.+.+..... .......+++|+|||...|.+.+.+.+..+..
T Consensus 59 ----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~ 132 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR 132 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH
Confidence 244556665555543332 57889999999999988753211 12223679999999999876677777777777
Q ss_pred CCeEEEEEeecCC-CchhhhhcccCC
Q 008558 506 LPLSILIIGVGGA-DFKEMEILDADK 530 (561)
Q Consensus 506 ~p~siiivGvG~~-~f~~m~~ld~d~ 530 (561)
.++.|++||+|.. +...|+.|....
T Consensus 133 ~~i~i~~i~~~~~~~~~~l~~~~~~~ 158 (177)
T smart00327 133 SGVKVFVVGVGNDVDEEELKKLASAP 158 (177)
T ss_pred CCCEEEEEEccCccCHHHHHHHhCCC
Confidence 7899999999998 999999999654
No 223
>PLN02223 phosphoinositide phospholipase C
Probab=98.30 E-value=6.7e-06 Score=89.15 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=75.4
Q ss_pred cceeEeeecCCCc-----CCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEE
Q 008558 203 TTELILRCSDLDC-----KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 276 (561)
Q Consensus 203 ~v~~~i~a~nL~~-----~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~ 276 (561)
+.+.+++|+.++. .+.....|||+++...+-... ...++|.+..++.||+|++ |.|.+.... -..|.|+||
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~nNg~nPvWne~F~F~i~~PE--LAlLrf~V~ 487 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVKNNEWKPTWGEEFTFPLTYPD--LALISFEVY 487 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeCCCCcCceecceeEEEEEccC--ceEEEEEEE
Confidence 4456788887641 133456899999988652111 1346787777889999998 777664332 346899999
Q ss_pred eccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 277 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 277 D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
|+|..+.+++||++.+++..|+. + -...+|.+.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~--G-yR~VpL~~~~ 521 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIE--G-IRAVPLYDER 521 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcC--C-ceeEeccCCC
Confidence 99988899999999999999964 2 2456776644
No 224
>PLN02952 phosphoinositide phospholipase C
Probab=98.26 E-value=6.6e-06 Score=90.93 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred ccceeEeeecCCCc------CCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEE
Q 008558 202 TTTELILRCSDLDC------KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIE 274 (561)
Q Consensus 202 ~~v~~~i~a~nL~~------~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ie 274 (561)
.+.+.+++|++++. .+.+...|||+++...+-... ...++|+++.++.||+|++ |.|++... .-.-|.|+
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D-~~~~kTkvi~nN~nPvWnE~F~F~i~~P--ELAllrf~ 547 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPAD-NAKKKTKIIEDNWYPAWNEEFSFPLTVP--ELALLRIE 547 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCC-CcceeeeeccCCCCcccCCeeEEEEEcC--CccEEEEE
Confidence 34556888887642 123344599999988652111 2456999999999999998 66665432 13468999
Q ss_pred EEeccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 275 CFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 275 V~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
|||+|..+.++++|++.+++..|+. + -.+.+|.+..
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~--G-yR~VpL~~~~ 583 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRP--G-IRSVPLHDKK 583 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcC--C-ceeEeCcCCC
Confidence 9999998899999999999999964 2 2466776544
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=98.22 E-value=1.1e-05 Score=88.59 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=86.5
Q ss_pred cceeEeeecCCCc---C---CCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCce-ec-ceeeeeecCCCCccEEEE
Q 008558 203 TTELILRCSDLDC---K---DLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIE 274 (561)
Q Consensus 203 ~v~~~i~a~nL~~---~---d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W-~e-f~~~~~~l~d~~~~L~ie 274 (561)
+.+.+++|++|+. . +.+...|||+++...+-... ...+||++++++.||.| ++ |.|++... .-.-|+|+
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-~~~~rTk~~~n~~nP~W~~e~f~F~~~~p--ELA~lRf~ 509 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-TVSYRTETAVDQWFPIWGNDEFLFQLRVP--ELALLWFK 509 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-CCcceeeccCCCCCceECCCeEEEEEEcC--ceeEEEEE
Confidence 4556789988631 1 23445799999987652111 24589999999999999 76 66665432 13578999
Q ss_pred EEeccCCCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEEeEeeeeeeeee
Q 008558 275 CFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTF 340 (561)
Q Consensus 275 V~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l~~~~~~~~~sF 340 (561)
|+|+|..+.+++||++.+++..|++ + -...+|.+.+.. . + .+.=.|.++.+.+.++|
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~--G-YR~VpL~~~~G~--~-l---~~atLfv~~~~~~~~~~ 566 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKS--G-VRAVRLHDRAGK--A-Y---KNTRLLVSFALDPPYTF 566 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhC--C-eeEEEccCCCCC--C-C---CCeEEEEEEEEcCcccc
Confidence 9999988889999999999999964 2 235666664431 1 1 33334447778888776
No 226
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.19 E-value=4.9e-06 Score=88.32 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=72.4
Q ss_pred eeEeeecCCCcCCCC-CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec--ceeeeeecCCCCccEEEEEEeccCC
Q 008558 205 ELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~-g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e--f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
+-+..||+|+-||.. ...|.|+++...+ ..+||++-.+++||+||. |.|.++.-.-.+.||+|.+.|+|..
T Consensus 7 vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 7 VKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred eEEEeccCCcccccccccchheeEEEecc------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 445678999999954 4689999999865 468999999999999997 6555543322367999999999999
Q ss_pred CCCceeEEEEEehhhHh
Q 008558 282 GKHDLIGKVQKSLADLE 298 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~ 298 (561)
+.+|-||.+.++++-|.
T Consensus 81 sandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLC 97 (1169)
T ss_pred ccccccceeeeccChHH
Confidence 99999999999999885
No 227
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.18 E-value=2.1e-05 Score=75.00 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=112.3
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
+.+++.+|-+.| + .. .+.+.++...+..+++.+. .+-++-++-|+.. +.--+++...
T Consensus 1 ~Dv~~vlD~SgS---------m---~~---~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-----~~~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGS---------I---GY---SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-----AKELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCC---------c---cc---hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-----ceEEEECCCc
Confidence 357889998874 3 21 2336777777888887764 2346888889875 1123555442
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCC
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDL 506 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~ 506 (561)
.. ...+.+.++-+........+|.|++++.|+.|.+............-.++++||||..++..++.++..++.+.
T Consensus 61 ~~----~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~~~ 136 (186)
T cd01471 61 NS----TNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLRER 136 (186)
T ss_pred cc----cchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHHHC
Confidence 11 11222222222333344568999999999999876654211122233578999999998877777666666677
Q ss_pred CeEEEEEeecC-CCchhhhhcccCCCcccccCCCCccCCceeeeeecccccC
Q 008558 507 PLSILIIGVGG-ADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQS 557 (561)
Q Consensus 507 p~siiivGvG~-~~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~ 557 (561)
++.|..||||. .|...|+.|-+.. .. . .-.+++-..+|+++.+
T Consensus 137 gv~v~~igiG~~~d~~~l~~ia~~~-~~--~-----~~~~~~~~~~~~~~~~ 180 (186)
T cd01471 137 GVIIAVLGVGQGVNHEENRSLVGCD-PD--D-----SPCPLYLQSSWSEVQN 180 (186)
T ss_pred CCEEEEEEeehhhCHHHHHHhcCCC-CC--C-----CCCCeeecCCHHHHHH
Confidence 89999999997 5888999988643 11 0 1246666677766543
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.17 E-value=1.2e-05 Score=88.58 Aligned_cols=99 Identities=23% Similarity=0.246 Sum_probs=75.2
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCcee-eeEEEEEeeCceeEEEEEEEEccCCcccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWI-TKHIITYQFEVVQTLVFRIYDVDTQFHNVDV 131 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~-e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~ 131 (561)
|.||+|++... |-..|||+|.+-+..-.-....+|.|+.|.|||+|+ ++|.|.....+--.|+|.|||.|-.
T Consensus 1072 igaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf------ 1144 (1267)
T KOG1264|consen 1072 LGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF------ 1144 (1267)
T ss_pred eeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc------
Confidence 67999995543 455699999887621111134555567788999999 9999998888888999999999976
Q ss_pred cccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 132 KTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 132 ~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+...|||++.+++..|..+. ...+|++
T Consensus 1145 -----s~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1145 -----SDPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred -----CCcceeeeeecchhhhhccc---eeeeccc
Confidence 56679999999999997653 3457765
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.12 E-value=1.1e-06 Score=95.31 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=88.2
Q ss_pred cceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCC-ceeeEEEceeecCCCCCceec-cee--eee
Q 008558 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESG-THIPVCKTEVLKNETKPTWKS-VFL--NIQ 262 (561)
Q Consensus 187 ~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g-~~~~~~kTevik~tlnP~W~e-f~~--~~~ 262 (561)
.|.+.+++.+-.....+++-++.|+++-+.|.+|.||||++|.+...-- --.++.||.|+++|+||+|+| |.| +.+
T Consensus 933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred CCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 4677777766666667777799999999999999999999998865210 014577999999999999998 544 443
Q ss_pred ecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 263 QVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 263 ~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
.......-|.|.|+|+|-...+||-|++-+-|..+.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 322235578999999999999999999999888874
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.11 E-value=1.3e-05 Score=88.76 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=78.1
Q ss_pred EEEE-EEEcCCCC-CCC---CCCCCcEEEEEEEc-CCCceeeEeeeeeec-CCCCCceeeeEEEEEeeCceeEEEEEEEE
Q 008558 49 IELS-FSAADLRD-RDV---LSKSDPMLVVYMKA-RDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (561)
Q Consensus 49 vel~-isa~~L~~-~D~---~sksDPyv~v~~~~-~~~~~~~~~rTevi~-n~lNP~w~e~f~i~~~fe~~q~L~~~VyD 121 (561)
+.+. +++++++. .+. ...+||||.|.+.+ +.. ....+|++++ |+-||.|+++|.|.....+.-.|+|.|+|
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D--~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD--CAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc--hhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 5554 57885543 332 25789999998765 211 1477999555 66999999999999988888899999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
+|.. +++||+|+..+++.+|..+- .-.+|.+
T Consensus 696 ~d~~-----------~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~ 726 (746)
T KOG0169|consen 696 YDYI-----------GKDDFIGQTTLPVSELRQGY---RHVPLLS 726 (746)
T ss_pred cCCC-----------CcccccceeeccHHHhhCce---eeeeecC
Confidence 9975 78999999999999998643 3467755
No 231
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.10 E-value=8.1e-05 Score=69.46 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=105.9
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
.++++.+|-+.|= . . ...+.|-.++..++.....+..+.+++|+...... ++.
T Consensus 3 ~~v~~vlD~S~SM---------~----~---~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~-----~~~------ 55 (171)
T cd01461 3 KEVVFVIDTSGSM---------S----G---TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEF-----SPS------ 55 (171)
T ss_pred ceEEEEEECCCCC---------C----C---hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceee-----cCc------
Confidence 4688999999953 1 1 23677777888888888777789999998762110 110
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeE
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~s 509 (561)
+...+-+.+ +...+.+..+.+.|-|++..-|+.+.+..+.. ...=-++++||||..+|-+++.+++.++.+.++.
T Consensus 56 ~~~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~ 130 (171)
T cd01461 56 SVSATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSS----PGSVPQIILLTDGEVTNESQILKNVREALSGRIR 130 (171)
T ss_pred ceeCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccC----CCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCce
Confidence 111222222 33345666777899999999999998876531 1234689999999998888888888888777999
Q ss_pred EEEEeecC-CCchhhhhcccCC
Q 008558 510 ILIIGVGG-ADFKEMEILDADK 530 (561)
Q Consensus 510 iiivGvG~-~~f~~m~~ld~d~ 530 (561)
|..||+|. .+...|+.|-...
T Consensus 131 i~~i~~g~~~~~~~l~~ia~~~ 152 (171)
T cd01461 131 LFTFGIGSDVNTYLLERLAREG 152 (171)
T ss_pred EEEEEeCCccCHHHHHHHHHcC
Confidence 99999996 5788888887433
No 232
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.09 E-value=9.9e-05 Score=70.75 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=104.2
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
+..++++.||-++| ++ .+..+.|-.++..++.....+..+-++.|+..+. . -+|+....
T Consensus 12 ~p~~vv~llD~SgS---------M~-------~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~-~----~~~~~~~~ 70 (190)
T cd01463 12 SPKDIVILLDVSGS---------MT-------GQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVN-P----VVPCFNDT 70 (190)
T ss_pred CCceEEEEEECCCC---------CC-------cHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCee-E----Eeeecccc
Confidence 44788999999995 32 1345666677777777777777899999998721 1 12322110
Q ss_pred -CCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhc---cc--cCCceEEEEEEeCCcccCHHHHHHHHH
Q 008558 428 -SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSL---AN--HGQKYFVLLIITDGVVTDLQETKDALV 501 (561)
Q Consensus 428 -~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~---~~--~~~~y~vlliltdg~i~d~~~t~~~i~ 501 (561)
..+.... .+...+.+..++..|.|++...|+.+.+..++.+ .. ....-.++++||||..++..+..+++.
T Consensus 71 ~~~~~~~~----~~~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~ 146 (190)
T cd01463 71 LVQATTSN----KKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYN 146 (190)
T ss_pred eEecCHHH----HHHHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhc
Confidence 0011112 2333455678888999999999999988666421 11 112335899999999988777776654
Q ss_pred Hcc--CCCeEEEEEeecCC--CchhhhhcccC
Q 008558 502 KAS--DLPLSILIIGVGGA--DFKEMEILDAD 529 (561)
Q Consensus 502 ~as--~~p~siiivGvG~~--~f~~m~~ld~d 529 (561)
... ..|+.|..||||.+ |...|+.|-..
T Consensus 147 ~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~ 178 (190)
T cd01463 147 WDKNSEIPVRVFTYLIGREVTDRREIQWMACE 178 (190)
T ss_pred ccccCCCcEEEEEEecCCccccchHHHHHHhh
Confidence 322 35899999999974 78888888743
No 233
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.05 E-value=1.9e-05 Score=87.23 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=75.8
Q ss_pred cceeEeeecCCCc--C----CCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEE
Q 008558 203 TTELILRCSDLDC--K----DLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIEC 275 (561)
Q Consensus 203 ~v~~~i~a~nL~~--~----d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV 275 (561)
+.+.++.|++++. . +.++..|||+++...+-... ....+|++..++.||.|++ |.|++.... -..|+|+|
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D-~~~~kT~v~~n~~nP~Wneef~F~l~vPE--LAllRf~V 547 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVD-EVMEKTKIEYDTWTPIWNKEFIFPLAVPE--LALLRVEV 547 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCC-CcccceeccCCCCCCccCCeeEEEEEcCc--eeEEEEEE
Confidence 4456788887642 1 23445799999988752111 1246888888999999998 776654322 45799999
Q ss_pred EeccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 276 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 276 ~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
+|+|..+.+++||++.+++..|+. + -...+|.+.+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~--G-yR~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQ--G-IHAVPLFNRK 582 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhC--c-cceEeccCCC
Confidence 999998899999999999999974 2 2456776644
No 234
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.99 E-value=6.8e-05 Score=82.73 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=74.3
Q ss_pred cceeEeeecCCC----c--CCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEE
Q 008558 203 TTELILRCSDLD----C--KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIEC 275 (561)
Q Consensus 203 ~v~~~i~a~nL~----~--~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV 275 (561)
+.+.++.|++++ . .+.+...|||+++...+-.+. ....||+++.++.||.|++ |.|.+... .-.-|+|+|
T Consensus 454 L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~nn~nP~W~e~f~F~i~~P--eLAllRf~V 530 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLEDNWIPAWDEVFEFPLTVP--ELALLRLEV 530 (581)
T ss_pred EEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCCCCCcccCCeeEEEEEcC--ceeEEEEEE
Confidence 444577887642 2 123445789999988642111 2356999999999999998 66665432 235789999
Q ss_pred EeccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 276 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 276 ~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
||+|..+.+++||++.+++..|+. + -...+|.+..
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~--G-yR~V~L~~~~ 565 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQ--G-IRAFPLHSRK 565 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhC--c-cceEEccCCC
Confidence 999988889999999999999964 2 2456666544
No 235
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.95 E-value=4.1e-05 Score=65.38 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=66.2
Q ss_pred eeEeeecCCCcCC---CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccC
Q 008558 205 ELILRCSDLDCKD---LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 205 ~~~i~a~nL~~~d---~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.+..++|++..+ +++++|||+.+...+ ...+||++. .||.|++ |.|+++ ....+.+.|||...
T Consensus 3 I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~s---rnd~WnE~F~i~Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 3 ITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKPS---RNDRWNEDFEIPVE----KNNEEEVIVYDKGG 70 (109)
T ss_pred EEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccCC---CCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence 4567899999888 678899999998854 458999884 7999998 888874 36789999999754
Q ss_pred CCCCceeEEEEEehhhHhh
Q 008558 281 NGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 281 ~g~~d~IG~~~i~l~~l~~ 299 (561)
...-.||-.-+.+++|.+
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 445789999999999963
No 236
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.94 E-value=8.3e-05 Score=68.24 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=96.4
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
++++.+|.|+| + . ...++.+...+..++..+. .+-++.++.|+..+. --+++....
T Consensus 2 di~~llD~S~S---------m---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~-----~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSES---------V---G----PENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR-----VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCC---------c---C----HHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce-----EEEECCCCC
Confidence 56788898884 2 1 1245566666666665554 467788999988621 113443321
Q ss_pred CCCcccCHHHHHHHHHhhhcceee-c-CCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccC
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVNL-A-GPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~~-~-gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~ 505 (561)
..+.+.+... .+.. . |-|++...|+.+.+...+..........++++||||..++-.+..+++-+..+
T Consensus 61 ------~~~~~~~~i~----~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~ 130 (161)
T cd01450 61 ------SKDDLLKAVK----NLKYLGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKD 130 (161)
T ss_pred ------CHHHHHHHHH----hcccCCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHH
Confidence 2344444333 2222 2 37999999999998776543222456789999999998874445555555556
Q ss_pred CCeEEEEEeecCCCchhhhhccc
Q 008558 506 LPLSILIIGVGGADFKEMEILDA 528 (561)
Q Consensus 506 ~p~siiivGvG~~~f~~m~~ld~ 528 (561)
.++-+++||+|..+.+.|+.|-+
T Consensus 131 ~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 131 EGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CCCEEEEEeccccCHHHHHHHhC
Confidence 69999999999989999998873
No 237
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.93 E-value=0.00012 Score=66.35 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=99.3
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
++++.||.|+| + . ...++++...+..++..+.. .-.+-+++|+..+ ...++++..
T Consensus 2 ~v~~viD~S~S---------m---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~-----~~~~~~~~~- 59 (161)
T cd00198 2 DIVFLLDVSGS---------M---G----GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNA-----RVVLPLTTD- 59 (161)
T ss_pred cEEEEEeCCCC---------c---C----cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCcc-----ceeeccccc-
Confidence 57899999885 2 1 25566667777777776665 6778899998641 112222210
Q ss_pred CCCcccCHHHHHHHHHhhhccee--ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHH-HHHHHHHHcc
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVN--LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKAS 504 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~--~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~-~t~~~i~~as 504 (561)
...+.+. +.+..+. ..|.|.+...++.+.+...+.. ......+++++|||..++-. +..+.+-.+.
T Consensus 60 -----~~~~~~~----~~~~~~~~~~~~~t~~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~ 128 (161)
T cd00198 60 -----TDKADLL----EAIDALKKGLGGGTNIGAALRLALELLKSAK--RPNARRVIILLTDGEPNDGPELLAEAARELR 128 (161)
T ss_pred -----CCHHHHH----HHHHhcccCCCCCccHHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCCCCcchhHHHHHHHH
Confidence 1222222 3333333 7889999999999998876542 34568899999999987644 4445555566
Q ss_pred CCCeEEEEEeecC-CCchhhhhcccC
Q 008558 505 DLPLSILIIGVGG-ADFKEMEILDAD 529 (561)
Q Consensus 505 ~~p~siiivGvG~-~~f~~m~~ld~d 529 (561)
...+.|.+||+|+ .+-..++.|++.
T Consensus 129 ~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 129 KLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 6699999999998 788888888854
No 238
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.90 E-value=5.6e-05 Score=83.79 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=75.2
Q ss_pred cceeEeeecCCCcC-C---CCCCCCceEEEEEEcCCCceeeEEEceeec-CCCCCceec-ceeeeeecCCCCccEEEEEE
Q 008558 203 TTELILRCSDLDCK-D---LFSRNDPFLVISKIVESGTHIPVCKTEVLK-NETKPTWKS-VFLNIQQVGSKDSPLIIECF 276 (561)
Q Consensus 203 ~v~~~i~a~nL~~~-d---~~g~sDPy~~i~~~~~~g~~~~~~kTevik-~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~ 276 (561)
+.+-+++|.+++.. + +...+|||+.+...+--+. ....+|++++ |+-||.|++ |+|++.... -.-|+|+|+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE--LAliRF~V~ 694 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSVPE--LALIRFEVH 694 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEeccc--eeEEEEEEE
Confidence 45567888865543 2 2246899998876441111 2357999655 669999998 776665332 357999999
Q ss_pred eccCCCCCceeEEEEEehhhHhhccCCCceeeeeccc
Q 008558 277 NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (561)
Q Consensus 277 D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~ 313 (561)
|+|..++++|+|++.+++.+|++ + -...+|.+..
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~--G-yRhVpL~~~~ 728 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQ--G-YRHVPLLSRE 728 (746)
T ss_pred ecCCCCcccccceeeccHHHhhC--c-eeeeeecCCC
Confidence 99999999999999999999974 2 3467887754
No 239
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.87 E-value=0.00029 Score=65.67 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=97.7
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
|++++.+|.|+| +. . ..+++|..++..+++....+-.+-++.|+..+ .. -+++..
T Consensus 1 ~~~~~vlD~S~S---------M~----~---~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~-~~----~~~~~~---- 55 (170)
T cd01465 1 LNLVFVIDRSGS---------MD----G---PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAA-ET----VLPATP---- 55 (170)
T ss_pred CcEEEEEECCCC---------CC----C---hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCc-cE----EecCcc----
Confidence 578999999994 32 1 13678888888888888777789999998761 11 122211
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC----HHHHHHHHHHccC
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----LQETKDALVKASD 505 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d----~~~t~~~i~~as~ 505 (561)
. ...+ ...+.+.+++..|.|++..-++.+.+..++.... ..--.++++|||.-++ .++..+++..+..
T Consensus 56 -~-~~~~----~l~~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~--~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~ 127 (170)
T cd01465 56 -V-RDKA----AILAAIDRLTAGGSTAGGAGIQLGYQEAQKHFVP--GGVNRILLATDGDFNVGETDPDELARLVAQKRE 127 (170)
T ss_pred -c-chHH----HHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhcCC--CCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhc
Confidence 0 1112 2234455667789999999999999887654321 1224578999998643 4555555555556
Q ss_pred CCeEEEEEeecCC-Cchhhhhccc
Q 008558 506 LPLSILIIGVGGA-DFKEMEILDA 528 (561)
Q Consensus 506 ~p~siiivGvG~~-~f~~m~~ld~ 528 (561)
..+-|..||+|.. +...|+.+-.
T Consensus 128 ~~v~i~~i~~g~~~~~~~l~~ia~ 151 (170)
T cd01465 128 SGITLSTLGFGDNYNEDLMEAIAD 151 (170)
T ss_pred CCeEEEEEEeCCCcCHHHHHHHHh
Confidence 6788999999953 6777777663
No 240
>PLN02270 phospholipase D alpha
Probab=97.86 E-value=0.00012 Score=82.75 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCCceEEEEEEcCCCceeeEEEceeecCC-CCCceec-ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhH
Q 008558 220 SRNDPFLVISKIVESGTHIPVCKTEVLKNE-TKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (561)
Q Consensus 220 g~sDPy~~i~~~~~~g~~~~~~kTevik~t-lnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l 297 (561)
+.||||+.+.+.. ..+-||.++.+. .||.|+| |.++.-. .-..+.|.|.|-|-.|. .+||.+.+++.+|
T Consensus 45 ~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~i~~ah---~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~ 115 (808)
T PLN02270 45 GESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFHIYCAH---MASNIIFTVKDDNPIGA-TLIGRAYIPVEEI 115 (808)
T ss_pred CCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceEEeecc---CcceEEEEEecCCccCc-eEEEEEEEEHHHh
Confidence 4689999999854 468899999885 6999998 7777642 34689999999998887 6999999999999
Q ss_pred hhccCCCceeeeeccccc
Q 008558 298 EKLHSSGQGQNLFLSTAA 315 (561)
Q Consensus 298 ~~~~~~~~~~~l~n~~~~ 315 (561)
........++++++..++
T Consensus 116 ~~g~~i~~~~~~~~~~~~ 133 (808)
T PLN02270 116 LDGEEVDRWVEILDNDKN 133 (808)
T ss_pred cCCCccccEEeccCCCCC
Confidence 654445678999987643
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.82 E-value=2e-05 Score=89.97 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=94.8
Q ss_pred cccceEEeecceeccccccceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceecce----ee
Q 008558 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF----LN 260 (561)
Q Consensus 185 ~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~ef~----~~ 260 (561)
+..|.|.+++++- .+.+.+++..+++|+-..-....|||++.|+..+ .+.....||+++.+|.||+|||.. ++
T Consensus 1510 ~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPd-p~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPD-PRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred ccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCC-chHhhhhhhccccccCCCchhhheeecCCc
Confidence 4457888888774 5678888999999976555667899999999874 455668899999999999999943 34
Q ss_pred eeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhccCCCceeeee
Q 008558 261 IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLF 310 (561)
Q Consensus 261 ~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~ 310 (561)
.+.+ .++.|++.||..+....+.++|.+.++|.++.-.+....||+|-
T Consensus 1587 ~~~l--~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1587 KEIL--QQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred hhhh--hhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 3323 25899999999888888899999999999886444445677763
No 242
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.78 E-value=0.00039 Score=64.36 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=94.1
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
+++++.+|.++| + .. +..++|-.++..+++....+-++-+++|+... .. -+|+.. ..
T Consensus 1 ~~v~~vlD~S~S---------M---~~----~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~-~~----~~~~~~--~~ 57 (155)
T cd01466 1 VDLVAVLDVSGS---------M---AG----DKLQLVKHALRFVISSLGDADRLSIVTFSTSA-KR----LSPLRR--MT 57 (155)
T ss_pred CcEEEEEECCCC---------C---Cc----HHHHHHHHHHHHHHHhCCCcceEEEEEecCCc-cc----cCCCcc--cC
Confidence 367889999885 2 11 23455555555555555454569999998762 11 123321 01
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeE
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~s 509 (561)
+. -.+...+.+..+.+.|-|.+..-|+.+.+..++.. ....-.++++||||..++- .++..+...++.
T Consensus 58 ~~------~~~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~iillTDG~~~~~----~~~~~~~~~~v~ 125 (155)
T cd01466 58 AK------GKRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRR--QKNPVASIMLLSDGQDNHG----AVVLRADNAPIP 125 (155)
T ss_pred HH------HHHHHHHHHHhccCCCCccHHHHHHHHHHHHhhcc--cCCCceEEEEEcCCCCCcc----hhhhcccCCCce
Confidence 10 12334455666788899999999999998765431 1223368999999987654 334456677999
Q ss_pred EEEEeec-CCCchhhhhcccC
Q 008558 510 ILIIGVG-GADFKEMEILDAD 529 (561)
Q Consensus 510 iiivGvG-~~~f~~m~~ld~d 529 (561)
|..||+| +.+...|+.|-.-
T Consensus 126 v~~igig~~~~~~~l~~iA~~ 146 (155)
T cd01466 126 IHTFGLGASHDPALLAFIAEI 146 (155)
T ss_pred EEEEecCCCCCHHHHHHHHhc
Confidence 9999999 5688889888743
No 243
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.77 E-value=0.00015 Score=68.56 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=95.0
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNG 425 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~ 425 (561)
.+++++.||.++| + ... ....-.+|+..+.+.+...+ ..-++-++.|+... . --+|+..
T Consensus 3 ~~~v~~llD~SgS---------M---~~~-~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a-~----~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGS---------M---AGE-PIEALNQGLQMLQSELRQDPYALESVEISVITFDSAA-R----VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCC---------C---CCh-HHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCc-e----EecCCcc
Confidence 3577899999885 2 211 12233455666655555432 24469999998751 1 1234322
Q ss_pred CCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccc----cCCc-eEEEEEEeCCcccCH-HHHHHH
Q 008558 426 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN----HGQK-YFVLLIITDGVVTDL-QETKDA 499 (561)
Q Consensus 426 ~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~----~~~~-y~vlliltdg~i~d~-~~t~~~ 499 (561)
. . ......++..|-|++..-|+++.+........ .... -.++++||||..+|- ....++
T Consensus 65 ~---------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~ 129 (176)
T cd01464 65 L---------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIER 129 (176)
T ss_pred H---------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHH
Confidence 1 0 11235667889999999999999876543210 1111 237899999998764 444467
Q ss_pred HHHccCCCeEEEEEeecC-CCchhhhhcccCC
Q 008558 500 LVKASDLPLSILIIGVGG-ADFKEMEILDADK 530 (561)
Q Consensus 500 i~~as~~p~siiivGvG~-~~f~~m~~ld~d~ 530 (561)
+.++-..++.|..||||. .+...|+.|-+..
T Consensus 130 ~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~~ 161 (176)
T cd01464 130 IKEARDSKGRIVACAVGPKADLDTLKQITEGV 161 (176)
T ss_pred HHhhcccCCcEEEEEeccccCHHHHHHHHCCC
Confidence 777666688999999995 6999999998543
No 244
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.68 E-value=0.0009 Score=63.08 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc-CCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD-SDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd-~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
.+.+.+|.++| +. . .+..+.|-.++..+++... .+-.+-+|+|+...+.......++. .....
T Consensus 2 ~v~~llD~SgS---------M~---~---~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~ 65 (174)
T cd01454 2 AVTLLLDLSGS---------MR---S---DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDE 65 (174)
T ss_pred EEEEEEECCCC---------CC---C---CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCccc
Confidence 46788999995 21 1 1344444444444444333 2456999999876211111111221 11111
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC----------HHHHHHH
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----------LQETKDA 499 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d----------~~~t~~~ 499 (561)
+ . ....++.+..+...|.|.+.+-|+.+.+.-.+. ...--++++||||.-++ +++.+++
T Consensus 66 ~-~------~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~ 134 (174)
T cd01454 66 S-L------HERARKRLAALSPGGNTRDGAAIRHAAERLLAR----PEKRKILLVISDGEPNDLDYYEGNVFATEDALRA 134 (174)
T ss_pred c-c------chhHHHHHHccCCCCCCcHHHHHHHHHHHHhcC----CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHH
Confidence 1 0 122345666777888999999999998876543 12345899999999875 3455555
Q ss_pred HHHccCCCeEEEEEeecCCC
Q 008558 500 LVKASDLPLSILIIGVGGAD 519 (561)
Q Consensus 500 i~~as~~p~siiivGvG~~~ 519 (561)
+.+|.+..+.+..||+|+..
T Consensus 135 ~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 135 VIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHHHhCCcEEEEEEecCcc
Confidence 77887889999999999875
No 245
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.57 E-value=0.00066 Score=63.37 Aligned_cols=145 Identities=18% Similarity=0.257 Sum_probs=89.6
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
.+++.+|-+.|= .. ..++++...+-.++..++ .+-++.+..|+..+ .--|+++. .
T Consensus 2 Dv~~vlD~S~Sm------------~~----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~-----~~~~~l~~-~ 59 (164)
T cd01482 2 DIVFLVDGSWSI------------GR----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDP-----RTEFDLNA-Y 59 (164)
T ss_pred CEEEEEeCCCCc------------Ch----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCe-----eEEEecCC-C
Confidence 467888877752 11 234555555555554443 45678999998862 22366642 1
Q ss_pred CCCcccCHHHHHHHHHhhhccee-ecCCCCcHHHHHHHHHHHHhh-ccccCCceEEEEEEeCCcccC-HHHHHHHHHHcc
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTD-LQETKDALVKAS 504 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~-~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdg~i~d-~~~t~~~i~~as 504 (561)
...+.++++-. .+. ..|.|+...-|+.+.+...+. .......--+++|||||.-+| .++..+.+.
T Consensus 60 -----~~~~~l~~~l~----~~~~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk--- 127 (164)
T cd01482 60 -----TSKEDVLAAIK----NLPYKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLR--- 127 (164)
T ss_pred -----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHH---
Confidence 22344444433 333 478899999888887654322 111233456899999999754 344444443
Q ss_pred CCCeEEEEEeecCCCchhhhhcccC
Q 008558 505 DLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 505 ~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
...+.|..||+|+.+-..|++|-++
T Consensus 128 ~~gi~i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 128 NLGVNVFAVGVKDADESELKMIASK 152 (164)
T ss_pred HCCCEEEEEecCcCCHHHHHHHhCC
Confidence 4688999999999887777777754
No 246
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.56 E-value=0.00055 Score=63.57 Aligned_cols=146 Identities=17% Similarity=0.249 Sum_probs=90.1
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
+++++.+|-+.| +. ..|+++...+..++..+.. .-++.+..|+..+.. .--|+++..
T Consensus 1 ldv~~llD~S~S---------m~--------~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~---~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGS---------VR--------GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQ---RVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcc---------hh--------hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCce---EEEecCCCC
Confidence 467888998884 21 1256666666676776654 566889999885111 112555431
Q ss_pred CCCCcccCHHHHHHHHHhhhccee-ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC-HHHHHHHHHHcc
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-LQETKDALVKAS 504 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d-~~~t~~~i~~as 504 (561)
.+ .+.+++ .+..+. ..|.|+....|+.+.+...+..........+++++|||.-++ ..+..+.+.+
T Consensus 61 -~~-----~~~l~~----~i~~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~-- 128 (163)
T cd01476 61 -ND-----GEELLE----KVDNLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRA-- 128 (163)
T ss_pred -CC-----HHHHHH----HHHhCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhh--
Confidence 11 233333 333444 367899999999998876532111222348999999998754 3444555544
Q ss_pred CCCeEEEEEeecCC---Cchhhhhcc
Q 008558 505 DLPLSILIIGVGGA---DFKEMEILD 527 (561)
Q Consensus 505 ~~p~siiivGvG~~---~f~~m~~ld 527 (561)
..-+.|.-||+|+. +...+..+-
T Consensus 129 ~~~v~v~~vg~g~~~~~~~~~L~~ia 154 (163)
T cd01476 129 VPNIETFAVGTGDPGTVDTEELHSIT 154 (163)
T ss_pred cCCCEEEEEECCCccccCHHHHHHHh
Confidence 46788999999986 555555554
No 247
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.56 E-value=0.00095 Score=64.79 Aligned_cols=161 Identities=23% Similarity=0.294 Sum_probs=100.3
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCC---CCCc--eeEEe
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPI---DGPV--SHCFN 422 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~---~~~~--~~~f~ 422 (561)
...++++.||.++ |+.+.+.. ..+..+.|..++..++..+..+.++-++.|+.... .... ..|..
T Consensus 19 ~~~~vv~vlD~Sg---------SM~~~~~~-~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 19 LPPNVAIVLDNSG---------SMREVDGG-GETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CCCcEEEEEeCCC---------CCcCCCCC-cchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 3467889999998 44432222 24667777777777787786777899999998521 1111 01111
Q ss_pred CCCCCCCCcccCHH-HHHHHHHhhhccee-ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCH---HHHH
Q 008558 423 LNGSNSYCEVEGIP-GIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL---QETK 497 (561)
Q Consensus 423 l~~~~~~~~~~g~~-~v~~~Y~~~~~~~~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~---~~t~ 497 (561)
.. .+.+.. .-.+...+.+..+. ..|-|++..-|+.+.+... ...-..+++||||.-++- .+..
T Consensus 89 ~~------~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------~~~~~~iillTDG~~~~~~~~~~~~ 156 (206)
T cd01456 89 TA------PVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD------PGRVNVVVLITDGEDTCGPDPCEVA 156 (206)
T ss_pred cc------ccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC------CCCcceEEEEcCCCccCCCCHHHHH
Confidence 11 111210 11334455677777 8899999999998887653 112268999999987653 3444
Q ss_pred HHHHHcc--CCCeEEEEEeecCC-CchhhhhcccCC
Q 008558 498 DALVKAS--DLPLSILIIGVGGA-DFKEMEILDADK 530 (561)
Q Consensus 498 ~~i~~as--~~p~siiivGvG~~-~f~~m~~ld~d~ 530 (561)
..+.+.. .-++.|-+||+|.. +...|+.|=...
T Consensus 157 ~~~~~~~~~~~~i~i~~igiG~~~~~~~l~~iA~~t 192 (206)
T cd01456 157 RELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEAT 192 (206)
T ss_pred HHHHHhcCCCCCceEEEEEecCcccHHHHHHHHHhc
Confidence 4444331 24788999999975 677787776433
No 248
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.55 E-value=0.0017 Score=60.03 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=96.8
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
++++.+|-|.| +...+. ..+...+|..++..++..+..+ ++.++.|+..+ ...+++.
T Consensus 1 dvv~v~D~SgS---------M~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~-----~~~~~~t------ 57 (172)
T PF13519_consen 1 DVVFVLDNSGS---------MNGYDG--NRTRIDQAKDALNELLANLPGD-RVGLVSFSDSS-----RTLSPLT------ 57 (172)
T ss_dssp EEEEEEE-SGG---------GGTTTS--SS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSC-----EEEEEEE------
T ss_pred CEEEEEECCcc---------cCCCCC--CCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccc-----ccccccc------
Confidence 47899999994 432221 2578999999999999988755 89999999851 1234432
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEE
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSI 510 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~si 510 (561)
...+.+.++-++.-......|.|.+...|+.+.+..... ...=-.+++||||.-+ ....+++..+....+.|
T Consensus 58 --~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~----~~~~~~iv~iTDG~~~--~~~~~~~~~~~~~~i~i 129 (172)
T PF13519_consen 58 --SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASS----DNRRRAIVLITDGEDN--SSDIEAAKALKQQGITI 129 (172)
T ss_dssp --SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-----SSEEEEEEEEES-TTH--CHHHHHHHHHHCTTEEE
T ss_pred --ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhC----CCCceEEEEecCCCCC--cchhHHHHHHHHcCCeE
Confidence 455666666666655666789999999999999877643 1344567888999765 33334666667889999
Q ss_pred EEEeecCCCc--hhhhhcc
Q 008558 511 LIIGVGGADF--KEMEILD 527 (561)
Q Consensus 511 iivGvG~~~f--~~m~~ld 527 (561)
.+||+|...- ..|+.|-
T Consensus 130 ~~v~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 130 YTVGIGSDSDANEFLQRLA 148 (172)
T ss_dssp EEEEES-TT-EHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHH
Confidence 9999997754 4666665
No 249
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.50 E-value=0.0013 Score=62.78 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=95.7
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---------CCCcceeeecccCCCCCce
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---------DKRFPAWGFGARPIDGPVS 418 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---------d~~~p~~GfG~~~~~~~~~ 418 (561)
|.+++++.+|-++|=+ ...++.+...+-.+++.+.. .-++-++-|+.. +.
T Consensus 1 c~~dvv~vlD~S~Sm~----------------~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-----~~ 59 (186)
T cd01480 1 GPVDITFVLDSSESVG----------------LQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-----QE 59 (186)
T ss_pred CCeeEEEEEeCCCccc----------------hhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-----ce
Confidence 6788999999988522 13345555545555555422 245777777754 33
Q ss_pred eEEeCCCCCCCCcccCHHHHHHHHHhhhccee-ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCH--HH
Q 008558 419 HCFNLNGSNSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QE 495 (561)
Q Consensus 419 ~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~--~~ 495 (561)
..|++.....+ . +...+.+..++ ..|.|....-|+.|.+..... .....=-++++||||.-++. ..
T Consensus 60 ~~~~l~~~~~~-----~----~~l~~~i~~l~~~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~~~~~~~~~ 128 (186)
T cd01480 60 VEAGFLRDIRN-----Y----TSLKEAVDNLEYIGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGHSDGSPDGG 128 (186)
T ss_pred eeEecccccCC-----H----HHHHHHHHhCccCCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCCcCCCcchh
Confidence 45777532112 2 23345556665 478999999999998876541 12234468899999986432 22
Q ss_pred HHHHHHHccCCCeEEEEEeecCCCchhhhhcccC
Q 008558 496 TKDALVKASDLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 496 t~~~i~~as~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
..+++-++.+..+.|..||||..+-..|+++-++
T Consensus 129 ~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~ 162 (186)
T cd01480 129 IEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACD 162 (186)
T ss_pred HHHHHHHHHHCCCEEEEEecCccchHHHHHHHcC
Confidence 3344445557799999999999877777777744
No 250
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.49 E-value=0.00011 Score=78.46 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred EEEE-EEEcCCCCCCCC-CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeee-EEEEEeeCcee--EEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITK-HIITYQFEVVQ--TLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~-sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~-f~i~~~fe~~q--~L~~~VyD~D 123 (561)
+-+. ..+|+|+.||.. -..|.||.+.+.+ ..++|.|-.++|||.|+.. |.|++..++.| +|.+.+.|+|
T Consensus 5 l~vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 5 LGVKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred ceeEEEeccCCcccccccccchheeEEEecc------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 4444 468999999964 4678999999875 5889999999999999966 67777665544 8999999999
Q ss_pred CCcccccccccccccceeeeeeEeechhhh
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIV 153 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~ 153 (561)
.. +.+|-||.+.+++.-|.
T Consensus 79 ty-----------sandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 79 TY-----------SANDAIGKVNIDIDPLC 97 (1169)
T ss_pred cc-----------ccccccceeeeccChHH
Confidence 87 67899999999987664
No 251
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=9.3e-05 Score=74.60 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=68.6
Q ss_pred EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccCCccccc
Q 008558 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 53 isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~~~~~~~ 130 (561)
+.|.+|..+|..+-|||||.+++.+ +...+...+|.+.++++||.|++.|.++..... .-.+.+.|||.+..
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~p-dv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G----- 313 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSP-DVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG----- 313 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCC-CcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC-----
Confidence 7999999999999999999999986 344457889999999999999999876543322 23788999998875
Q ss_pred ccccccccceeeeeeEeec
Q 008558 131 VKTLKLVEQQFLGEATCTL 149 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L 149 (561)
...+++|-+.+-+
T Consensus 314 ------~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 314 ------KSNDSIGGSMLGG 326 (362)
T ss_pred ------cCccCCCcccccc
Confidence 4678888765543
No 252
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.44 E-value=9.4e-05 Score=84.62 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=79.8
Q ss_pred EEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEE-EeeC--ceeEEEEEEEEccCCccccc
Q 008558 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFE--VVQTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 54 sa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~-~~fe--~~q~L~~~VyD~D~~~~~~~ 130 (561)
.+++|+-..-...+||||+.|+.++ .+.+-..||+++++|.||.|+|.+..+ +..| ..+.|.+.||..+..
T Consensus 1532 H~K~L~~Lqdg~~P~pyVK~YLlPd-p~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~----- 1605 (1639)
T KOG0905|consen 1532 HAKGLALLQDGQDPDPYVKTYLLPD-PRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGL----- 1605 (1639)
T ss_pred hhcccccccCCCCCCcceeEEecCC-chHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccce-----
Confidence 3677765555678999999999983 333468899999999999999998765 3333 345899999998865
Q ss_pred ccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 131 VKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
....|+|.+.++|.++.-.+...-|++|..
T Consensus 1606 ------~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1606 ------LENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ------eeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 678899999999998876666667999854
No 253
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.38 E-value=0.0035 Score=68.87 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=100.6
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCC-Ccc--eeeecccCCCCCceeEEeCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDK-RFP--AWGFGARPIDGPVSHCFNLNG 425 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~-~~p--~~GfG~~~~~~~~~~~f~l~~ 425 (561)
++.+++.||-++| + + ..|-.++|...+..++..++... .+- +..|+.. ...-|+|..
T Consensus 42 ~lDIvFLLD~SgS---------M---g---~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-----~r~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGS---------I---G---YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-----TTELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCc---------c---C---CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-----ceEEEecCC
Confidence 4788999998885 3 2 12445778888888888775432 222 2345443 344567654
Q ss_pred CCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccC
Q 008558 426 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (561)
Q Consensus 426 ~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~ 505 (561)
.. -...+.++.+-.+....+...|-|++...|..+.++..+... ....=-++++||||.-++..++.+++.....
T Consensus 102 ~~----s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~-R~nvpKVVILLTDG~sns~~dvleaAq~LR~ 176 (576)
T PTZ00441 102 GA----SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVN-RENAIQLVILMTDGIPNSKYRALEESRKLKD 176 (576)
T ss_pred Cc----cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhccc-ccCCceEEEEEecCCCCCcccHHHHHHHHHH
Confidence 21 123356666666666667788999999999998877553311 1122368999999997666666666655666
Q ss_pred CCeEEEEEeecCC-Cchhhhhcc
Q 008558 506 LPLSILIIGVGGA-DFKEMEILD 527 (561)
Q Consensus 506 ~p~siiivGvG~~-~f~~m~~ld 527 (561)
..+-|..||||.+ +-+.|+.|-
T Consensus 177 ~GVeI~vIGVG~g~n~e~LrlIA 199 (576)
T PTZ00441 177 RNVKLAVIGIGQGINHQFNRLLA 199 (576)
T ss_pred CCCEEEEEEeCCCcCHHHHHHHh
Confidence 7899999999974 444555554
No 254
>PLN02352 phospholipase D epsilon
Probab=97.36 E-value=0.0018 Score=73.30 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=107.9
Q ss_pred CCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeeeeeE
Q 008558 67 SDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 146 (561)
Q Consensus 67 sDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~ 146 (561)
.||||.|.+.. ..++|| .+.-||.|+|+|.+.+.-.....+.|.|-| ...+||.+.
T Consensus 36 ~~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----------------~~~~ig~~~ 91 (758)
T PLN02352 36 KATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----------------KCSILGRFH 91 (758)
T ss_pred CCceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----------------CCeEEEEEE
Confidence 39999999965 279999 667799999999988765443478888876 146999999
Q ss_pred eechhhhccCC-eeEEEEccccccccccccccCCCCCCCcccceEEeecceeccccccceeEeeecCCCcCCCCCCCCce
Q 008558 147 CTLSQIVTRKN-RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPF 225 (561)
Q Consensus 147 ~~L~el~~~~~-~~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~~~~~v~~~i~a~nL~~~d~~g~sDPy 225 (561)
+++.+|+.... ...|+++.. ..+ ++....+|+++..+.+...... -++.+...+..|...-|
T Consensus 92 ~p~~~~~~g~~~~~~~~~~~~-----------~~~--~p~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~gvp~~~ 154 (758)
T PLN02352 92 IQAHQIVTEASFINGFFPLIM-----------ENG--KPNPELKLRFMLWFRPAELEPT----WCKILENGSFQGLRNAT 154 (758)
T ss_pred EEHHHhhCCCcccceEEEccc-----------CCC--CCCCCCEEEEEEEEEEhhhCcc----hhhcccCCCcCCcCCcc
Confidence 99999998754 567999866 221 1121257888777654433211 12223333455665566
Q ss_pred EEEEEEcCCCceeeEEEceeecCCCCCcee----c---ceeeeeecCCCCccEEEEEEeccC
Q 008558 226 LVISKIVESGTHIPVCKTEVLKNETKPTWK----S---VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 226 ~~i~~~~~~g~~~~~~kTevik~tlnP~W~----e---f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
+.... |..+..|+-..+.++.-|.-. . |.--.+.+......|.|.-|+.+.
T Consensus 155 f~~r~----g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~ 212 (758)
T PLN02352 155 FPQRS----NCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDVYKAIEGAKHLIYIAGWSFNP 212 (758)
T ss_pred cccCC----CCEEEEEecCCCccccCCcceeecCHHHHHHHHHHHHHhhccEEEEEEEEecC
Confidence 65433 445677888777776656422 1 110011112345678888888774
No 255
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.35 E-value=0.0022 Score=61.83 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=89.9
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
+++.+.||-+.| + .+ ..++++..++..++...+ .+-++-++.|+..+ .--||+.-.
T Consensus 1 ~di~~vlD~SgS---------M---~~----~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~-----~~~~~~~~~ 59 (198)
T cd01470 1 LNIYIALDASDS---------I---GE----EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDP-----KEIVSIRDF 59 (198)
T ss_pred CcEEEEEECCCC---------c---cH----HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCc-----eEEEecccC
Confidence 478899999885 3 21 345666666666665443 34568899998751 123565421
Q ss_pred CCCCcccCHHHHHHHHHhhhccee-----ecCCCCcHHHHHHHHHHHHhhccc----cCCceEEEEEEeCCcccC---HH
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVN-----LAGPTLFGPVISNAALIAGQSLAN----HGQKYFVLLIITDGVVTD---LQ 494 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~-----~~gpt~f~~ii~~~~~~a~~~~~~----~~~~y~vlliltdg~i~d---~~ 494 (561)
.-.-.+.+++ .+..++ ..|-|++..-|+.+.+........ ....-.++++||||.-++ ..
T Consensus 60 ----~~~~~~~~~~----~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~ 131 (198)
T cd01470 60 ----NSNDADDVIK----RLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPL 131 (198)
T ss_pred ----CCCCHHHHHH----HHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChh
Confidence 1111223333 333332 246699999998887643221100 012247899999998763 33
Q ss_pred HHHHHHHHc----------cCCCeEEEEEeecCC-CchhhhhcccCC
Q 008558 495 ETKDALVKA----------SDLPLSILIIGVGGA-DFKEMEILDADK 530 (561)
Q Consensus 495 ~t~~~i~~a----------s~~p~siiivGvG~~-~f~~m~~ld~d~ 530 (561)
+..+.+.++ ...++.|..||||+. +.+.|+.|-+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~~~ 178 (198)
T cd01470 132 PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLASKK 178 (198)
T ss_pred HHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhcCC
Confidence 444444433 234689999999964 889999987543
No 256
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.33 E-value=0.0032 Score=71.23 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=99.8
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~ 428 (561)
..++++.||.++| ++ . +..++|-.++..+|.....+-.|-++.|+... ...|+..-
T Consensus 271 p~~vvfvlD~SgS---------M~----g---~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~-----~~~~~~~~--- 326 (596)
T TIGR03788 271 PRELVFVIDTSGS---------MA----G---ESIEQAKSALLLALDQLRPGDRFNIIQFDSDV-----TLLFPVPV--- 326 (596)
T ss_pred CceEEEEEECCCC---------CC----C---ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcc-----eEeccccc---
Confidence 4688999999995 32 1 34677777777777777777789999998761 11222111
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCe
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPL 508 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~ 508 (561)
..+ ++=++...+.+..++..|-|++.+.|+.+.+..... ....--.+++||||.+.|..+.++.+..+. -..
T Consensus 327 ---~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~---~~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~~ 398 (596)
T TIGR03788 327 ---PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPE---SSGALRQVVFLTDGAVGNEDALFQLIRTKL-GDS 398 (596)
T ss_pred ---cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhccc---CCCceeEEEEEeCCCCCCHHHHHHHHHHhc-CCc
Confidence 111 222334455677888899999999999988763211 122234577899999998888887775543 345
Q ss_pred EEEEEeecCC-Cchhhhhcc
Q 008558 509 SILIIGVGGA-DFKEMEILD 527 (561)
Q Consensus 509 siiivGvG~~-~f~~m~~ld 527 (561)
.|-.||+|++ +...|+.|-
T Consensus 399 ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 399 RLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred eEEEEEeCCCcCHHHHHHHH
Confidence 6778999976 888888776
No 257
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.30 E-value=0.0011 Score=73.58 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=67.9
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec--ceeeeeecCCCCccEEEEEEeccCC
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e--f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
.+-++.||.|++.. -|-..||+++-..+..-.....++|.++.|.+||+|++ |.|.+..+ .-.-|+|.|+|.|.+
T Consensus 1068 sv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP--e~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1068 SVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP--EFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC--ceEEEEEEEeccccc
Confidence 34578899998542 34467999998866211112344555666889999994 66665532 346799999999999
Q ss_pred CCCceeEEEEEehhhHhh
Q 008558 282 GKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l~~ 299 (561)
+...|||++..++..|+.
T Consensus 1145 s~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred CCcceeeeeecchhhhhc
Confidence 988999999999999963
No 258
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.23 E-value=0.0082 Score=57.76 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=96.8
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHH-HHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQ-RAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~-~ai~~i~~il~~yd~d---~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
.+++.+|=+.| + . ...++ +++..+-.+++.++-. -++.+.=|+..+ ..-||++.+
T Consensus 2 Di~fllD~S~S---------i---~----~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~-----~~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESAS---------I---G----YSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKN-----RDVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCc---------c---c----HHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCc-----eeEEecCcc
Confidence 36778887664 2 2 12344 3566666777777654 366677777652 223666542
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCH--HHHHHHHHHcc
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QETKDALVKAS 504 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~--~~t~~~i~~as 504 (561)
.-..-+.++++=++..+.....|.|+....|+++.+............--|+++||||.-+|- ....++...+.
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk 136 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYK 136 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHH
Confidence 122234555554443333344788999999988877644321111223569999999998864 34556666667
Q ss_pred CCCeEEEEEeecCCCchhhhhcccC
Q 008558 505 DLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 505 ~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
+..+.|..||||..+=..++.+-+.
T Consensus 137 ~~gV~i~~vGiG~~~~~el~~ia~~ 161 (192)
T cd01473 137 EENVKLLVVGVGAASENKLKLLAGC 161 (192)
T ss_pred HCCCEEEEEEeccccHHHHHHhcCC
Confidence 7899999999999887777777654
No 259
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.17 E-value=0.0078 Score=56.70 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=87.6
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
+++++.+|.+.|=.... .. ..+..+.|...+...+...+ +.++-++.|+.... .-+++..
T Consensus 3 ~~vv~vlD~S~SM~~~~---------~~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~-----~~~~~~~---- 62 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---------FV-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAF-----TQAPLTL---- 62 (180)
T ss_pred ceEEEEEECCccccccc---------CC-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCee-----eccCCCc----
Confidence 57889999999632211 10 12444555556666666554 44699999987621 0123221
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHH-HHHHHHHHccCCCe
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKASDLPL 508 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~-~t~~~i~~as~~p~ 508 (561)
+...+.+ .-+.+......|+|++..-|..+.+...+. ...-.++++||||.-++-. ...++.-.+....+
T Consensus 63 ----~~~~~~~-~l~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi 133 (180)
T cd01467 63 ----DRESLKE-LLEDIKIGLAGQGTAIGDAIGLAIKRLKNS----EAKERVIVLLTDGENNAGEIDPATAAELAKNKGV 133 (180)
T ss_pred ----cHHHHHH-HHHHhhhcccCCCCcHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC
Confidence 2222222 122233334678899988888888765533 2334789999999765311 11122223335678
Q ss_pred EEEEEeecC------------CCchhhhhcccC
Q 008558 509 SILIIGVGG------------ADFKEMEILDAD 529 (561)
Q Consensus 509 siiivGvG~------------~~f~~m~~ld~d 529 (561)
.|..||+|. .+.+.|+.|-..
T Consensus 134 ~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~ 166 (180)
T cd01467 134 RIYTIGVGKSGSGPKPDGSTILDEDSLVEIADK 166 (180)
T ss_pred EEEEEEecCCCCCcCCCCcccCCHHHHHHHHHh
Confidence 888889987 577778777643
No 260
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.17 E-value=0.0034 Score=61.81 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=92.0
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d---~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
+.+++.+|-+.| + . ...++++...+..++..++.. -++-+.-|+..+ .--|+|+..
T Consensus 3 ~DlvfllD~S~S---------m---~----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~-----~~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRS---------V---R----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTV-----KQEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCC---------C---C----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCce-----eEEeccccc
Confidence 568889998774 2 2 246888888888888888654 368888888762 234777531
Q ss_pred CCCCcccCHHHHHHHHHhhhcceee-cCCCCcHHHHHHHHHHHHhh-cc--ccCCc-eEEEEEEeCCcccC-HHHHHHHH
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQS-LA--NHGQK-YFVLLIITDGVVTD-LQETKDAL 500 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~~-~gpt~f~~ii~~~~~~a~~~-~~--~~~~~-y~vlliltdg~i~d-~~~t~~~i 500 (561)
.+ .+.+.++ +..++. .|.|....-|+.+.+.+-.. .. ..... =.++++||||.-.| ..+..+.+
T Consensus 62 -~~-----~~~l~~~----i~~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~l 131 (224)
T cd01475 62 -KS-----KADLKRA----VRRMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKA 131 (224)
T ss_pred -CC-----HHHHHHH----HHhCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHHH
Confidence 11 2334333 344444 45677776677766543211 10 11111 37899999998755 44444333
Q ss_pred HHccCCCeEEEEEeecCCCchhhhhcccC
Q 008558 501 VKASDLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 501 ~~as~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
-..-+.|..||||+.+...|+.+-+.
T Consensus 132 ---k~~gv~i~~VgvG~~~~~~L~~ias~ 157 (224)
T cd01475 132 ---RALGIEMFAVGVGRADEEELREIASE 157 (224)
T ss_pred ---HHCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 34578999999999888888877643
No 261
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.16 E-value=0.0031 Score=58.66 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=90.0
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
++++.+|-++|= . ...++.+..++..++..++. +-++-+.-|+.. +.--++++. .
T Consensus 2 Dvv~vlD~SgSm------------~----~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-----~~~~~~~~~-~ 59 (164)
T cd01472 2 DIVFLVDGSESI------------G----LSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-----PRTEFYLNT-Y 59 (164)
T ss_pred CEEEEEeCCCCC------------C----HHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-----eeEEEecCC-C
Confidence 578889988752 1 13445555566666666652 336778888765 111245432 1
Q ss_pred CCCcccCHHHHHHHHHhhhcceee-cCCCCcHHHHHHHHHHHHhhc-cccCCceEEEEEEeCCcccCHHHHHHHHHHccC
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSL-ANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~~-~gpt~f~~ii~~~~~~a~~~~-~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~ 505 (561)
.+ .+.+ .+.+..+.+ .|.|++.+.|..|.+.-.... ......=.++++||||.-++ +...+......
T Consensus 60 ~~-----~~~~----~~~l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~--~~~~~~~~l~~ 128 (164)
T cd01472 60 RS-----KDDV----LEAVKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD--DVEEPAVELKQ 128 (164)
T ss_pred CC-----HHHH----HHHHHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--hHHHHHHHHHH
Confidence 11 2222 334555554 788999999999988654321 01122346788899997654 22233333445
Q ss_pred CCeEEEEEeecCCCchhhhhcccCC
Q 008558 506 LPLSILIIGVGGADFKEMEILDADK 530 (561)
Q Consensus 506 ~p~siiivGvG~~~f~~m~~ld~d~ 530 (561)
..+.|..||+|+.+...|+.+-++.
T Consensus 129 ~gv~i~~ig~g~~~~~~L~~ia~~~ 153 (164)
T cd01472 129 AGIEVFAVGVKNADEEELKQIASDP 153 (164)
T ss_pred CCCEEEEEECCcCCHHHHHHHHCCC
Confidence 6889999999999999998888554
No 262
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.15 E-value=0.0097 Score=56.81 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=94.4
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc---cCCCCcceeeecccCCCCCceeEEeCC
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY---DSDKRFPAWGFGARPIDGPVSHCFNLN 424 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~y---d~d~~~p~~GfG~~~~~~~~~~~f~l~ 424 (561)
.=.++++++|-+.| +.-.+. .++..++|-.++.+.++.+ ++..++-++.|++.-+. ---||+
T Consensus 2 ~~r~ivi~lD~S~S---------M~a~D~--~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~----~~~PlT 66 (183)
T cd01453 2 IMRHLIIVIDCSRS---------MEEQDL--KPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAE----KLTDLT 66 (183)
T ss_pred ceeEEEEEEECcHH---------HhcCCC--CchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccE----EEECCC
Confidence 34578999999884 432332 3789999999999999877 34457888999543111 124666
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcce-eecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHc
Q 008558 425 GSNSYCEVEGIPGIMMAYTSALHNV-NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKA 503 (561)
Q Consensus 425 ~~~~~~~~~g~~~v~~~Y~~~~~~~-~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~a 503 (561)
.|. + .+...|..+ ...|-|.+...|+.|.+.-+... ...+=.|+|++|||.-.|-.+..+++..+
T Consensus 67 ~D~--------~----~~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~~~--~~~~~~iiil~sd~~~~~~~~~~~~~~~l 132 (183)
T cd01453 67 GNP--------R----KHIQALKTARECSGEPSLQNGLEMALESLKHMP--SHGSREVLIIFSSLSTCDPGNIYETIDKL 132 (183)
T ss_pred CCH--------H----HHHHHhhcccCCCCchhHHHHHHHHHHHHhcCC--ccCceEEEEEEcCCCcCChhhHHHHHHHH
Confidence 643 1 334444443 45677999999998887655321 11234588899998866544333334444
Q ss_pred cCCCeEEEEEeecCCCchhhhhcc
Q 008558 504 SDLPLSILIIGVGGADFKEMEILD 527 (561)
Q Consensus 504 s~~p~siiivGvG~~~f~~m~~ld 527 (561)
.+..+-|-+||+|.+ ...++++-
T Consensus 133 ~~~~I~v~~IgiG~~-~~~L~~ia 155 (183)
T cd01453 133 KKENIRVSVIGLSAE-MHICKEIC 155 (183)
T ss_pred HHcCcEEEEEEechH-HHHHHHHH
Confidence 455677888888853 33455554
No 263
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.15 E-value=0.0038 Score=59.16 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=93.9
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d---~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
+.+++.+|=+.| +. +..|+++...+..++..++.+ -++-+.-|+.. +.--|+|+.
T Consensus 1 ~Di~fvlD~S~S------------~~----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-----~~~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGS------------IY----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-----FRTEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCC------------CC----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-----eeEEEecCc-
Confidence 357788887664 22 256888888888888888763 46777778775 233577763
Q ss_pred CCCCcccCHHHHHHHHHhhhcce-eecCCCCcHHHHHHHHHHHHh-hccccCCceEEEEEEeCCcccCHHHHHHHHHHcc
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNV-NLAGPTLFGPVISNAALIAGQ-SLANHGQKYFVLLIITDGVVTDLQETKDALVKAS 504 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~-~~~gpt~f~~ii~~~~~~a~~-~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as 504 (561)
..+ ...++++ +..+ ...|.|+...-|+.|.+..-. ........-.|+++||||.-+|-..+.+++-.|-
T Consensus 59 ~~~-----~~~~~~~----i~~~~~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k 129 (177)
T cd01469 59 YRT-----KEEPLSL----VKHISQLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAE 129 (177)
T ss_pred cCC-----HHHHHHH----HHhCccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHH
Confidence 222 2344443 3333 256789999999888875421 1111223456888899999987554444555555
Q ss_pred CCCeEEEEEeecCCC-----chhhhhcc
Q 008558 505 DLPLSILIIGVGGAD-----FKEMEILD 527 (561)
Q Consensus 505 ~~p~siiivGvG~~~-----f~~m~~ld 527 (561)
...+-|.-||||+.. -+.|+.+-
T Consensus 130 ~~gv~v~~Vgvg~~~~~~~~~~~L~~ia 157 (177)
T cd01469 130 REGIIRYAIGVGGHFQRENSREELKTIA 157 (177)
T ss_pred HCCcEEEEEEecccccccccHHHHHHHh
Confidence 678999999999852 35555554
No 264
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.14 E-value=0.0043 Score=59.09 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=91.2
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc-CCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD-SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd-~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
.+++++.||-+.| + .. .+.+++..+-+++..|+ ++-++-++-|+.. ..--|+++...
T Consensus 4 ~~Dvv~llD~SgS---------m---~~-----~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~-----~~~~~~l~~~~ 61 (185)
T cd01474 4 HFDLYFVLDKSGS---------V---AA-----NWIEIYDFVEQLVDRFNSPGLRFSFITFSTR-----ATKILPLTDDS 61 (185)
T ss_pred ceeEEEEEeCcCc---------h---hh-----hHHHHHHHHHHHHHHcCCCCcEEEEEEecCC-----ceEEEeccccH
Confidence 3688999999886 2 21 12223333444444443 3456888888765 22347775421
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhh-ccccCCceEEEEEEeCCcccC--HHHHHHHHHHcc
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTD--LQETKDALVKAS 504 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdg~i~d--~~~t~~~i~~as 504 (561)
..+.++- +.+..+...|.|++..-|+.|.+..... ....... .++++||||.-+| ...+.++.-.+-
T Consensus 62 --------~~~~~~l-~~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~~~~~~~~a~~l~ 131 (185)
T cd01474 62 --------SAIIKGL-EVLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEHEAKLSR 131 (185)
T ss_pred --------HHHHHHH-HHHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCCCcchHHHHHHHH
Confidence 1222222 1245666789999999999988755322 1111122 7899999999843 334444444444
Q ss_pred CCCeEEEEEeecCCCchhhhhcccC
Q 008558 505 DLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 505 ~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
+..+.|.-||||+.+...|+.+-++
T Consensus 132 ~~gv~i~~vgv~~~~~~~L~~iA~~ 156 (185)
T cd01474 132 KLGAIVYCVGVTDFLKSQLINIADS 156 (185)
T ss_pred HcCCEEEEEeechhhHHHHHHHhCC
Confidence 5678899999988888888888744
No 265
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.09 E-value=0.014 Score=56.24 Aligned_cols=154 Identities=8% Similarity=0.152 Sum_probs=99.4
Q ss_pred ceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---------CCCcceeeecccCCCCCc
Q 008558 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---------DKRFPAWGFGARPIDGPV 417 (561)
Q Consensus 347 G~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---------d~~~p~~GfG~~~~~~~~ 417 (561)
...+.+++.||-+.| +. .+.|+++...+..++..++- .-++-+.=|+.. .
T Consensus 17 ~~~~DivfvlD~S~S------------m~----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-----a 75 (193)
T cd01477 17 NLWLDIVFVVDNSKG------------MT----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-----A 75 (193)
T ss_pred cceeeEEEEEeCCCC------------cc----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-----e
Confidence 456788999998885 22 24588888888777776664 134555555544 3
Q ss_pred eeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhh-ccccCCceEEEEEEeCCcccCH-HH
Q 008558 418 SHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDL-QE 495 (561)
Q Consensus 418 ~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdg~i~d~-~~ 495 (561)
.-.|+|+. ..-.++++++.+..+..+...|-|++..-|+.|.+.-... .......--|+++||||.-++- ..
T Consensus 76 ~~~~~L~d------~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~ 149 (193)
T cd01477 76 TVVADLND------LQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSND 149 (193)
T ss_pred EEEEeccc------ccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCC
Confidence 34588852 3346788888887777777777899999998887765432 1112334578999999744322 22
Q ss_pred HHHHHHHccCCCeEEEEEeecCC-Cchhhhhcc
Q 008558 496 TKDALVKASDLPLSILIIGVGGA-DFKEMEILD 527 (561)
Q Consensus 496 t~~~i~~as~~p~siiivGvG~~-~f~~m~~ld 527 (561)
..++..++.+..+.|.-||||+. |=..|++|.
T Consensus 150 ~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~ 182 (193)
T cd01477 150 PRPIAARLKSTGIAIITVAFTQDESSNLLDKLG 182 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHHH
Confidence 23333344566999999999975 433455554
No 266
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.07 E-value=0.014 Score=55.28 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=90.4
Q ss_pred EEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 352 ~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~-~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
+++.+|.+.| +.+ .+..+.|..++..++. .+..+-.+-++.|.... ...-+|+..
T Consensus 3 v~lvlD~SgS---------M~~------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~----~~~~~~~t~----- 58 (178)
T cd01451 3 VIFVVDASGS---------MAA------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTE----AEVLLPPTR----- 58 (178)
T ss_pred EEEEEECCcc---------CCC------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCC----ceEEeCCCC-----
Confidence 5678898884 321 1456777777777664 34455679999997541 112234332
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCccc---C-HHHH-HHHHHHccC
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D-LQET-KDALVKASD 505 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~---d-~~~t-~~~i~~as~ 505 (561)
..+.+ .+.+..+...|-|.+..-|..+.+..+... .....-.++++||||.-+ | .... .++.-++..
T Consensus 59 ---~~~~~----~~~l~~l~~~G~T~l~~aL~~a~~~l~~~~-~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~ 130 (178)
T cd01451 59 ---SVELA----KRRLARLPTGGGTPLAAGLLAAYELAAEQA-RDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRA 130 (178)
T ss_pred ---CHHHH----HHHHHhCCCCCCCcHHHHHHHHHHHHHHHh-cCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHh
Confidence 22222 345667788999999999999998762211 111224789999999875 2 2233 444444556
Q ss_pred CCeEEEEEeecCC--Cchhhhhcc
Q 008558 506 LPLSILIIGVGGA--DFKEMEILD 527 (561)
Q Consensus 506 ~p~siiivGvG~~--~f~~m~~ld 527 (561)
.++.|+.||+|.. +-..|+.|=
T Consensus 131 ~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 131 RGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred cCCcEEEEeCCCCccCccHHHHHH
Confidence 6888899999875 345677775
No 267
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.07 E-value=0.0069 Score=61.08 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=92.5
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~ 428 (561)
+.++++|||=+.| +.--+. .++..+ |+..|.+.+..-.. .++-+.+||+.+.- ..|++-+..
T Consensus 60 ~~qIvlaID~S~S---------M~~~~~--~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~~-----v~Plt~d~~ 121 (266)
T cd01460 60 DYQILIAIDDSKS---------MSENNS--KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQI-----LHPFDEQFS 121 (266)
T ss_pred CceEEEEEecchh---------cccccc--cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCceE-----eCCCCCCch
Confidence 4678999998884 432221 246666 89999998877665 45999999997321 134443221
Q ss_pred CCcccCHHHHHHHHHhhhcceeec-CCCCcHHHHHHHHHHHHhhccccCC--ceEEEEEEeCCcccCHHHHHHH-HHHcc
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLA-GPTLFGPVISNAALIAGQSLANHGQ--KYFVLLIITDGVVTDLQETKDA-LVKAS 504 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~-gpt~f~~ii~~~~~~a~~~~~~~~~--~y~vlliltdg~i~d~~~t~~~-i~~as 504 (561)
. ++.-+++....+. +-|+++..|..+.+.-.....+... .--++||||||...|-+..... +.+|.
T Consensus 122 ~----------~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~ 191 (266)
T cd01460 122 S----------QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAR 191 (266)
T ss_pred h----------hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHH
Confidence 1 1222344444454 4599999999998876543111111 2379999999996665555544 66777
Q ss_pred CCCeEEEEEeecCC
Q 008558 505 DLPLSILIIGVGGA 518 (561)
Q Consensus 505 ~~p~siiivGvG~~ 518 (561)
...+.+++|||-+.
T Consensus 192 e~~i~l~~I~ld~~ 205 (266)
T cd01460 192 EQNVFVVFIIIDNP 205 (266)
T ss_pred HcCCeEEEEEEcCC
Confidence 88999999999765
No 268
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=96.93 E-value=0.016 Score=53.04 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=77.0
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
.+.+.||.+.| + ... +.-....++..++..+.. .+..+-++.|+.. . +..++.+
T Consensus 2 ~v~illD~SgS---------M---~~~-k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~-~-----~~~~~~~----- 55 (152)
T cd01462 2 PVILLVDQSGS---------M---YGA-PEEVAKAVALALLRIALA--ENRDTYLILFDSE-F-----QTKIVDK----- 55 (152)
T ss_pred CEEEEEECCCC---------C---CCC-HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCC-c-----eEEecCC-----
Confidence 46789999985 2 111 122334444555555544 2346899999876 1 1122221
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCC-cccCHHHHHHHHHHccCCCeE
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKASDLPLS 509 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg-~i~d~~~t~~~i~~as~~p~s 509 (561)
-..+..+++ .+..+...|.|++.+.|..+.+..++.. ..=.+++||||| +-.+-.++.++...+..-..-
T Consensus 56 -~~~~~~~~~----~l~~~~~~ggT~l~~al~~a~~~l~~~~----~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~ 126 (152)
T cd01462 56 -TDDLEEPVE----FLSGVQLGGGTDINKALRYALELIERRD----PRKADIVLITDGYEGGVSDELLREVELKRSRVAR 126 (152)
T ss_pred -cccHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHhcC----CCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcE
Confidence 122344443 3445667899999999999998765431 112588999999 444444554222323334566
Q ss_pred EEEEeecCC
Q 008558 510 ILIIGVGGA 518 (561)
Q Consensus 510 iiivGvG~~ 518 (561)
|-.||||++
T Consensus 127 v~~~~~g~~ 135 (152)
T cd01462 127 FVALALGDH 135 (152)
T ss_pred EEEEEecCC
Confidence 777777764
No 269
>PRK13685 hypothetical protein; Provisional
Probab=96.82 E-value=0.017 Score=60.34 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=92.4
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
.++++++|-+.| +.-.+. .++..+.|-.++..+++....+.++-++.|++.+. - -.|++.|
T Consensus 89 ~~vvlvlD~S~S---------M~~~D~--~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~-~----~~p~t~d--- 149 (326)
T PRK13685 89 AVVMLVIDVSQS---------MRATDV--EPNRLAAAQEAAKQFADELTPGINLGLIAFAGTAT-V----LVSPTTN--- 149 (326)
T ss_pred ceEEEEEECCcc---------ccCCCC--CCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCcee-e----cCCCCCC---
Confidence 568899999995 432232 35888999999999999986677799999998721 0 1233221
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhh---cc-ccCCceEEEEEEeCCcccC------HHHHHHH
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS---LA-NHGQKYFVLLIITDGVVTD------LQETKDA 499 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~---~~-~~~~~y~vlliltdg~i~d------~~~t~~~ 499 (561)
.++-+..+..+++.+-|+...-|..+.+.+++. .. ......-.+++||||+-+. .....++
T Consensus 150 ---------~~~l~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~a 220 (326)
T PRK13685 150 ---------REATKNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTA 220 (326)
T ss_pred ---------HHHHHHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHH
Confidence 223345666777888899988888888776532 00 0112234678999997542 1222344
Q ss_pred HHHccCCCeEEEEEeecCC
Q 008558 500 LVKASDLPLSILIIGVGGA 518 (561)
Q Consensus 500 i~~as~~p~siiivGvG~~ 518 (561)
...|.+.++.|-+||+|..
T Consensus 221 a~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 221 ARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHcCCeEEEEEECCC
Confidence 5555566888888888863
No 270
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=96.81 E-value=0.02 Score=52.63 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=89.1
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
++++-||.++|. .. ....-..|++.+. +.-.+..+|-++.||..+- .+||- ....
T Consensus 2 ~vvilvD~S~Sm------------~g--~~~~~k~al~~~l---~~L~~~d~fnii~f~~~~~-----~~~~~---~~~~ 56 (155)
T PF13768_consen 2 DVVILVDTSGSM------------SG--EKELVKDALRAIL---RSLPPGDRFNIIAFGSSVR-----PLFPG---LVPA 56 (155)
T ss_pred eEEEEEeCCCCC------------CC--cHHHHHHHHHHHH---HhCCCCCEEEEEEeCCEee-----Ecchh---HHHH
Confidence 467889988863 11 1122344444444 4444555899999998611 11111 0011
Q ss_pred cccCHHHHHHHHHhhhcceee-cCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcc-cCHHHHHHHHHHccCCCe
Q 008558 431 EVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-TDLQETKDALVKASDLPL 508 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~-~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i-~d~~~t~~~i~~as~~p~ 508 (561)
. +.-++.=.+.+..++. .|.|++.+.|+.|.+.. .....-..+++||||.. ...+++.+.+-.+ .-.+
T Consensus 57 ~----~~~~~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~-----~~~~~~~~IilltDG~~~~~~~~i~~~v~~~-~~~~ 126 (155)
T PF13768_consen 57 T----EENRQEALQWIKSLEANSGGTDLLAALRAALALL-----QRPGCVRAIILLTDGQPVSGEEEILDLVRRA-RGHI 126 (155)
T ss_pred h----HHHHHHHHHHHHHhcccCCCccHHHHHHHHHHhc-----ccCCCccEEEEEEeccCCCCHHHHHHHHHhc-CCCc
Confidence 1 1223333556667888 99999999999888653 12344567889999996 4445777666554 3568
Q ss_pred EEEEEeecC-CCchhhhhccc
Q 008558 509 SILIIGVGG-ADFKEMEILDA 528 (561)
Q Consensus 509 siiivGvG~-~~f~~m~~ld~ 528 (561)
.|.-+|+|. .+-..|++|-.
T Consensus 127 ~i~~~~~g~~~~~~~L~~LA~ 147 (155)
T PF13768_consen 127 RIFTFGIGSDADADFLRELAR 147 (155)
T ss_pred eEEEEEECChhHHHHHHHHHH
Confidence 888899997 57788887763
No 271
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.63 E-value=0.024 Score=53.17 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=90.8
Q ss_pred EEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCCCC
Q 008558 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (561)
Q Consensus 352 ~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~---d~~~p~~GfG~~~~~~~~~~~f~l~~~~~ 428 (561)
+++.+|=+.|- . ...|+++..-+.+++..++- .-++.+.-|+.. ....|+|+...
T Consensus 3 ivfllD~S~Si------------~----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-----~~~~~~l~~~~- 60 (165)
T cd01481 3 IVFLIDGSDNV------------G----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-----PRPEFYLNTHS- 60 (165)
T ss_pred EEEEEeCCCCc------------C----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-----eeEEEeccccC-
Confidence 56778866642 1 35678888888888888874 346667777665 23357776422
Q ss_pred CCcccCHHHHHHHHHhhhcceeec-C-CCCcHHHHHHHHHHHHhhcc---ccCCceEEEEEEeCCcccC-HHHHHHHHHH
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLA-G-PTLFGPVISNAALIAGQSLA---NHGQKYFVLLIITDGVVTD-LQETKDALVK 502 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~-g-pt~f~~ii~~~~~~a~~~~~---~~~~~y~vlliltdg~i~d-~~~t~~~i~~ 502 (561)
..++++++ +.++++. | .|+-...|+.+.+..-.... .....-.+|++||||.-+| ..+..+.+.
T Consensus 61 -----~~~~l~~~----i~~i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr- 130 (165)
T cd01481 61 -----TKADVLGA----VRRLRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALK- 130 (165)
T ss_pred -----CHHHHHHH----HHhcccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHH-
Confidence 23455544 4445554 4 47888888887764322110 0123457899999999865 333333333
Q ss_pred ccCCCeEEEEEeecCCCchhhhhcccC
Q 008558 503 ASDLPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 503 as~~p~siiivGvG~~~f~~m~~ld~d 529 (561)
+..+-|+.||+|..+.+.|+.+-++
T Consensus 131 --~~gv~i~~vG~~~~~~~eL~~ias~ 155 (165)
T cd01481 131 --RAGIVPFAIGARNADLAELQQIAFD 155 (165)
T ss_pred --HCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 3467888889988888888887754
No 272
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.59 E-value=0.053 Score=51.88 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=94.4
Q ss_pred EEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCCCC
Q 008558 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (561)
Q Consensus 352 ~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd---~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~ 428 (561)
.+++||.+.| +---| -.||.++.+..++..++..|- +..++=+..|++.-+ .---|+++|
T Consensus 6 ~vi~lD~S~s---------M~a~D--~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a----~v~~plT~D-- 68 (187)
T cd01452 6 TMICIDNSEY---------MRNGD--YPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSP----EVLVTLTND-- 68 (187)
T ss_pred EEEEEECCHH---------HHcCC--CCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCce----EEEECCCCC--
Confidence 4789998885 22122 157999999999998874332 244677788877311 112467664
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCe
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPL 508 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~ 508 (561)
..+-...|..+.+.|.+.|..-|+.|...-+... ...+.=-|+++++++.-.|-.+..+++.++.+..+
T Consensus 69 ----------~~~~~~~L~~i~~~g~~~l~~AL~~A~~~L~~~~-~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I 137 (187)
T cd01452 69 ----------QGKILSKLHDVQPKGKANFITGIQIAQLALKHRQ-NKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137 (187)
T ss_pred ----------HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCC-CcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 2333566667788899999988887765544321 12233466677776644565556566666667788
Q ss_pred EEEEEeecCC--Cchhhhhcc
Q 008558 509 SILIIGVGGA--DFKEMEILD 527 (561)
Q Consensus 509 siiivGvG~~--~f~~m~~ld 527 (561)
.|-|||+|+. +-+.++.|-
T Consensus 138 ~v~vI~~G~~~~~~~~l~~~~ 158 (187)
T cd01452 138 SVDIINFGEIDDNTEKLTAFI 158 (187)
T ss_pred eEEEEEeCCCCCCHHHHHHHH
Confidence 8888888865 445555554
No 273
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=96.55 E-value=0.022 Score=52.99 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=90.6
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc---cccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ---VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~---~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
++++.||-++|-+ ...++++...+..++. ..+..-++.+.-||.. ...-|+++..
T Consensus 1 DivflvD~S~sm~----------------~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-----~~~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMS----------------GDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-----ARVLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STTSC----------------HHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-----EEEEEETTSH-
T ss_pred CEEEEEeCCCCCc----------------hHHHHHHHHHHHHHHHhhhccccccccceeeeecc-----cccccccccc-
Confidence 4678899888532 1345556666666655 4555666777777765 2234555431
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhh-ccccCCceEEEEEEeCCcccCHHHHHHHHHHccC-
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDLQETKDALVKASD- 505 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~- 505 (561)
...+.++++= ........|.|++...|++|.+.-... .........++++||||..++-..........-.
T Consensus 59 -----~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (178)
T PF00092_consen 59 -----QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS 131 (178)
T ss_dssp -----SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH
T ss_pred -----cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh
Confidence 2233333332 234455678999999999999875433 1123578899999999999887433333333222
Q ss_pred CCeEEEEEeecCCCchhhhhcccC
Q 008558 506 LPLSILIIGVGGADFKEMEILDAD 529 (561)
Q Consensus 506 ~p~siiivGvG~~~f~~m~~ld~d 529 (561)
.-+.++.||+++.+=..++.|-+.
T Consensus 132 ~~i~~~~ig~~~~~~~~l~~la~~ 155 (178)
T PF00092_consen 132 NGIKVIAIGIDNADNEELRELASC 155 (178)
T ss_dssp CTEEEEEEEESCCHHHHHHHHSHS
T ss_pred cCcEEEEEecCcCCHHHHHHHhCC
Confidence 566666666655677777777743
No 274
>PLN02964 phosphatidylserine decarboxylase
Probab=96.55 E-value=0.0029 Score=70.99 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=58.1
Q ss_pred CCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeeeeeE
Q 008558 67 SDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 146 (561)
Q Consensus 67 sDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~ 146 (561)
+|||+.+..-+ .++.||++.++|+||+|++.-.+.+...+....+|.|||++.. ++++++|.|+
T Consensus 68 ~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------s~n~lv~~~e 131 (644)
T PLN02964 68 KDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL-----------SKNTLVGYCE 131 (644)
T ss_pred CCcEEEEEEec-----ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC-----------CHHHhhhhee
Confidence 59987765433 1799999999999999999887776665656679999999865 7899999999
Q ss_pred eechhhhc
Q 008558 147 CTLSQIVT 154 (561)
Q Consensus 147 ~~L~el~~ 154 (561)
++|.++..
T Consensus 132 ~~~t~f~~ 139 (644)
T PLN02964 132 LDLFDFVT 139 (644)
T ss_pred ecHhhccH
Confidence 98766543
No 275
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.50 E-value=0.072 Score=52.18 Aligned_cols=153 Identities=7% Similarity=0.046 Sum_probs=95.9
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCCCC--CceeEEeCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPIDG--PVSHCFNLNG 425 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~---yd~d~~~p~~GfG~~~~~~--~~~~~f~l~~ 425 (561)
.++++||.+. |++--.....++..+.|+.++..+++. +...-++-++.||+....+ ...|+|.+..
T Consensus 3 ~ivf~iDvS~---------SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~ 73 (218)
T cd01458 3 SVVFLVDVSP---------SMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD 73 (218)
T ss_pred EEEEEEeCCH---------HHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec
Confidence 3688999988 444111111368999999999999997 6666679999999973222 3467776642
Q ss_pred CCCCCcccCHHHHHHHHHhhhccee--------ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCccc------
Q 008558 426 SNSYCEVEGIPGIMMAYTSALHNVN--------LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT------ 491 (561)
Q Consensus 426 ~~~~~~~~g~~~v~~~Y~~~~~~~~--------~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~------ 491 (561)
..-|... .++.+.+.+..-. -++.|.|...|..|.++-++. ..+..=-.+++||||+=.
T Consensus 74 -l~~~~~~----~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~--~~~~~~k~IvL~TDg~~p~~~~~~ 146 (218)
T cd01458 74 -LDTPGAE----RVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG--KKKKSHKRIFLFTNNDDPHGGDSI 146 (218)
T ss_pred -CCCCCHH----HHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhc--cccccccEEEEECCCCCCCCCCHH
Confidence 1223222 3333333332221 245789999999888865541 111122478999999643
Q ss_pred CHHHHHHHHHHccCCCeEEEEEeecCCC
Q 008558 492 DLQETKDALVKASDLPLSILIIGVGGAD 519 (561)
Q Consensus 492 d~~~t~~~i~~as~~p~siiivGvG~~~ 519 (561)
+.++....+.+.....+.|..||+|..+
T Consensus 147 ~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 147 KDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 1234444455555678999999999764
No 276
>PLN02964 phosphatidylserine decarboxylase
Probab=96.47 E-value=0.0036 Score=70.24 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=55.1
Q ss_pred CCceEEEEEEcCCCceeeEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHh
Q 008558 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 222 sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~ 298 (561)
.|||+.+...+ .++|||+..++|+||+||+ |.+... + .....|.|||+++.+.++++|.+++++.++.
T Consensus 68 ~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~ 138 (644)
T PLN02964 68 KDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEKN--G--PHLARISVFETNRLSKNTLVGYCELDLFDFV 138 (644)
T ss_pred CCcEEEEEEec-----ceeeeeccccccCCcccchhhceEeccC--C--cceEEEEEEecCCCCHHHhhhheeecHhhcc
Confidence 59999887765 3799999999999999998 333222 1 2336999999999999999999999888774
No 277
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.26 E-value=0.0063 Score=54.47 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=71.9
Q ss_pred EEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCc
Q 008558 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCE 431 (561)
Q Consensus 352 ~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~~ 431 (561)
++||||-++| ++ ..+..+++..|..+++.+ ...+-++=|-++...- ..+..
T Consensus 1 i~vaiDtSGS------------is----~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~-----~~~~~------ 51 (126)
T PF09967_consen 1 IVVAIDTSGS------------IS----DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDV-----QVFRS------ 51 (126)
T ss_pred CEEEEECCCC------------CC----HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeee-----eEEec------
Confidence 4789998885 33 257888999999999998 3447777676652111 11110
Q ss_pred ccCHHHHHHHHHhhhcceeec--CCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeE
Q 008558 432 VEGIPGIMMAYTSALHNVNLA--GPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (561)
Q Consensus 432 ~~g~~~v~~~Y~~~~~~~~~~--gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~s 509 (561)
....+..+++. |-|+|.|+++++.+. .....++++||||.....++ +-..|.=
T Consensus 52 ----------~~~~~~~~~~~GgGGTdf~pvf~~~~~~--------~~~~~~vi~fTDg~~~~~~~-------~P~~~vl 106 (126)
T PF09967_consen 52 ----------LEDELRDIKLKGGGGTDFRPVFEYLEEN--------RPRPSVVIYFTDGEGWPPEE-------APPYPVL 106 (126)
T ss_pred ----------ccccccccccCCCCCCcchHHHHHHHhc--------CCCCCEEEEEeCCCCCCCCC-------CCCCcEE
Confidence 12334445554 689999999998754 34577889999998854321 2267887
Q ss_pred EEEEe
Q 008558 510 ILIIG 514 (561)
Q Consensus 510 iiivG 514 (561)
|++.|
T Consensus 107 Wvl~~ 111 (126)
T PF09967_consen 107 WVLPG 111 (126)
T ss_pred EEEeC
Confidence 88877
No 278
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.01 E-value=0.023 Score=50.37 Aligned_cols=93 Identities=13% Similarity=0.242 Sum_probs=64.4
Q ss_pred CcEEEEEEEc-CCCceeeEeeeeeecCCCCCceeeeEEEEEee-------C--------ceeEEEEEEEEccCCcccccc
Q 008558 68 DPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQF-------E--------VVQTLVFRIYDVDTQFHNVDV 131 (561)
Q Consensus 68 DPyv~v~~~~-~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-------e--------~~q~L~~~VyD~D~~~~~~~~ 131 (561)
++||.+.+.- +++ +..+|.++.++.-|.|+..+.|.+.. | +...+.|+||+.+..+- .+.
T Consensus 34 N~yv~i~lSFl~~~---e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~-~~~ 109 (143)
T cd08683 34 NSYVTIHLSFLPEK---ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSA-GDT 109 (143)
T ss_pred ceEEEEEeccCCCC---ceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccc-cce
Confidence 5899987543 222 68999999999999999999876541 1 13478999999876521 110
Q ss_pred cccccccceeeeeeEeechhhhccC-CeeEEEEc
Q 008558 132 KTLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDL 164 (561)
Q Consensus 132 ~~~~l~~~d~LG~~~~~L~el~~~~-~~~~~~~L 164 (561)
....-.+|-.||.+.+++.+|+..+ |-.-|+++
T Consensus 110 ~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 110 IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0001246779999999999997643 44567764
No 279
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=95.88 E-value=0.14 Score=52.47 Aligned_cols=139 Identities=20% Similarity=0.171 Sum_probs=78.4
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEeCCCC
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~-yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
..+++++.+|.++| +. +....|..++...++. ...+-++.++.|+..+. .-++++.+
T Consensus 52 ~p~~vvlvlD~SgS---------M~--------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~-----~~~~~t~~ 109 (296)
T TIGR03436 52 LPLTVGLVIDTSGS---------MR--------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLR-----LLQDFTSD 109 (296)
T ss_pred CCceEEEEEECCCC---------ch--------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCcee-----EeecCCCC
Confidence 46789999999995 21 2345666666666655 55667799999997621 11233321
Q ss_pred CCCCcccCHHHHHHHHHhhhc-----------ceeecCCCCcHHHHHHHHH-HHHhhccccCCceEEEEEEeCCcccCHH
Q 008558 427 NSYCEVEGIPGIMMAYTSALH-----------NVNLAGPTLFGPVISNAAL-IAGQSLANHGQKYFVLLIITDGVVTDLQ 494 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~-----------~~~~~gpt~f~~ii~~~~~-~a~~~~~~~~~~y~vlliltdg~i~d~~ 494 (561)
.+.+.++-.+.-. .+...|.|.+..-|..++. ...+.. ...+.=-++++||||.-++..
T Consensus 110 --------~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~-~~~p~rk~iIllTDG~~~~~~ 180 (296)
T TIGR03436 110 --------PRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANAL-AGIPGRKALIVISDGGDNRSR 180 (296)
T ss_pred --------HHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhh-cCCCCCeEEEEEecCCCcchH
Confidence 2333333222111 1223788888877766553 322221 100112579999999866544
Q ss_pred HHHHHHH-HccCCCeEEEEEeecC
Q 008558 495 ETKDALV-KASDLPLSILIIGVGG 517 (561)
Q Consensus 495 ~t~~~i~-~as~~p~siiivGvG~ 517 (561)
...+.++ .+....+.|-.||+|.
T Consensus 181 ~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 181 DTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEeccCc
Confidence 3333333 2334567788888874
No 280
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.86 E-value=0.15 Score=58.20 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=93.6
Q ss_pred eeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCCCC
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~-~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~ 426 (561)
....+++.||.++| +. . .+..+.|..++..++. .|-..-.+-+++|++.. ...-+|++
T Consensus 464 ~~~~vv~vvD~SgS---------M~---~---~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~----a~~~~p~t-- 522 (633)
T TIGR02442 464 AGNLVIFVVDASGS---------MA---A---RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEE----AEVLLPPT-- 522 (633)
T ss_pred CCceEEEEEECCcc---------CC---C---ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCC----ceEEcCCC--
Confidence 34678899999995 32 1 2566777777777664 46666679999997531 11123332
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC-------HHHHHHH
Q 008558 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-------LQETKDA 499 (561)
Q Consensus 427 ~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d-------~~~t~~~ 499 (561)
.+.+.+ .+.|..+...|.|.++.-|..+.+..++........=.++++||||.-+. .++...+
T Consensus 523 ------~~~~~~----~~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~ 592 (633)
T TIGR02442 523 ------SSVELA----ARRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTI 592 (633)
T ss_pred ------CCHHHH----HHHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHH
Confidence 122222 24667778899999999999999987753222333457899999998743 1222222
Q ss_pred HHHccCCCeEEEEEeecCC--Cchhhhhcc
Q 008558 500 LVKASDLPLSILIIGVGGA--DFKEMEILD 527 (561)
Q Consensus 500 i~~as~~p~siiivGvG~~--~f~~m~~ld 527 (561)
-.......+.+++|+.+.. ++..++.|=
T Consensus 593 a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA 622 (633)
T TIGR02442 593 AAKLAARGILFVVIDTESGFVRLGLAEDLA 622 (633)
T ss_pred HHHHHhcCCeEEEEeCCCCCcchhHHHHHH
Confidence 2222345677888888765 455666655
No 281
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.52 E-value=0.23 Score=56.06 Aligned_cols=148 Identities=16% Similarity=0.064 Sum_probs=94.0
Q ss_pred cceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEeCC
Q 008558 346 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLN 424 (561)
Q Consensus 346 gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~-yd~d~~~p~~GfG~~~~~~~~~~~f~l~ 424 (561)
.-....+++.||.|+| + . .+..++|-.++..++.. |-..-.+-++.|++.... .-++.
T Consensus 404 ~~~~~~v~fvvD~SGS---------M---~----~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~----~~lp~- 462 (589)
T TIGR02031 404 RKSGRLLIFVVDASGS---------A---A----VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE----VLLPP- 462 (589)
T ss_pred cccCceEEEEEECCCC---------C---C----hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce----EECCC-
Confidence 4455778899999995 3 1 14567777777777753 543346999999754111 11222
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCccc---C---------
Q 008558 425 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D--------- 492 (561)
Q Consensus 425 ~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~---d--------- 492 (561)
-.+... .++.|..+...|.|.+++-|..+.+.+++... ...-.++++||||.-+ +
T Consensus 463 -------t~~~~~----~~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~--~~~~~~ivllTDG~~nv~~~~~~~~~~~~ 529 (589)
T TIGR02031 463 -------SRSVEQ----AKRRLDVLPGGGGTPLAAGLAAAFQTALQARS--SGGTPTIVLITDGRGNIPLDGDPESIKAD 529 (589)
T ss_pred -------CCCHHH----HHHHHhcCCCCCCCcHHHHHHHHHHHHHHhcc--cCCceEEEEECCCCCCCCCCccccccccc
Confidence 113333 24668889999999999999999998876431 1223689999999864 1
Q ss_pred ---HHHH-HHHHHHccCCCeEEEEEeecCCC--chhhhhcc
Q 008558 493 ---LQET-KDALVKASDLPLSILIIGVGGAD--FKEMEILD 527 (561)
Q Consensus 493 ---~~~t-~~~i~~as~~p~siiivGvG~~~--f~~m~~ld 527 (561)
..+. .....+.....+.+++||+|... ...|+.|=
T Consensus 530 ~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA 570 (589)
T TIGR02031 530 REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLA 570 (589)
T ss_pred chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHH
Confidence 1111 12222223467889999999763 34466665
No 282
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.52 E-value=0.23 Score=55.93 Aligned_cols=148 Identities=17% Similarity=0.107 Sum_probs=100.6
Q ss_pred cceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCC
Q 008558 346 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLN 424 (561)
Q Consensus 346 gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~-~yd~d~~~p~~GfG~~~~~~~~~~~f~l~ 424 (561)
+-....+++.||.++| +. .+.-..|-.++..+|. .|-..-++-++.|++.... --.|..
T Consensus 398 ~~~~~~vvfvvD~SGS---------M~-------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~----~~lppT 457 (584)
T PRK13406 398 QRSETTTIFVVDASGS---------AA-------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE----LLLPPT 457 (584)
T ss_pred ccCCccEEEEEECCCC---------Cc-------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee----EEcCCC
Confidence 4445888999999995 21 1466777777777664 4766667999999654111 112211
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC-----------H
Q 008558 425 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-----------L 493 (561)
Q Consensus 425 ~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d-----------~ 493 (561)
. .++.+ ++.|..+.-.|-|.+++-|..|.+.+++.... ..-.++++||||.-+- .
T Consensus 458 ~--------~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~--~~~~~iVLlTDG~~n~~~~~~~~~~~~~ 523 (584)
T PRK13406 458 R--------SLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRK--GMTPTVVLLTDGRANIARDGTAGRAQAE 523 (584)
T ss_pred c--------CHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCCccccccccchh
Confidence 1 22222 46677888899999999999999988776422 2346899999998752 1
Q ss_pred HHHHHHHHHccCCCeEEEEEeecCCCchhhhhcc
Q 008558 494 QETKDALVKASDLPLSILIIGVGGADFKEMEILD 527 (561)
Q Consensus 494 ~~t~~~i~~as~~p~siiivGvG~~~f~~m~~ld 527 (561)
++...+...+....+.+++|+.|......|++|=
T Consensus 524 ~~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA 557 (584)
T PRK13406 524 EDALAAARALRAAGLPALVIDTSPRPQPQARALA 557 (584)
T ss_pred hHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHH
Confidence 3444444555566788999999988877787776
No 283
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.00 E-value=0.041 Score=57.44 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=75.2
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC-----------ceeE
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-----------VVQT 114 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe-----------~~q~ 114 (561)
+.+||. ++|.+++...-.---|-|+.+...-.. .-....+|.+|++|.+|.|++.|.+...-. ..-.
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 455665 577776643321223567777543211 112588999999999999999998765431 1126
Q ss_pred EEEEEEEccCCcccccccccccccceeeeeeEeechhhhccCCeeEEEEccc
Q 008558 115 LVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (561)
Q Consensus 115 L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~~~~~~~~L~~ 166 (561)
++|+||....+. .+|.++|.+.+.|.-|.....-...++|++
T Consensus 446 ~kfeifhkggf~----------rSdkl~gt~nikle~Len~cei~e~~~l~D 487 (523)
T KOG3837|consen 446 KKFEIFHKGGFN----------RSDKLTGTGNIKLEILENMCEICEYLPLKD 487 (523)
T ss_pred eeEEEeeccccc----------cccceeceeeeeehhhhcccchhhceeccc
Confidence 899999988752 689999999999998877665556677765
No 284
>PLN02352 phospholipase D epsilon
Probab=94.98 E-value=0.11 Score=59.16 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred CceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhhHhhcc
Q 008558 223 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLH 301 (561)
Q Consensus 223 DPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~~~ 301 (561)
|||+.+.+.. ..+-|| .+.-||.|+| |.++.-.. .+..+.|.|.| + ..+||.+.+++.+|....
T Consensus 37 ~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~vk~----~-~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 37 ATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITITLKT----K-CSILGRFHIQAHQIVTEA 101 (758)
T ss_pred CceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeee--cCCcEEEEEec----C-CeEEEEEEEEHHHhhCCC
Confidence 9999998854 457788 5567999998 77776422 12578999977 3 699999999999996432
Q ss_pred C-CCceeeeecccc
Q 008558 302 S-SGQGQNLFLSTA 314 (561)
Q Consensus 302 ~-~~~~~~l~n~~~ 314 (561)
. ...++++++..+
T Consensus 102 ~~~~~~~~~~~~~~ 115 (758)
T PLN02352 102 SFINGFFPLIMENG 115 (758)
T ss_pred cccceEEEcccCCC
Confidence 2 457899988764
No 285
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.047 Score=56.47 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=74.9
Q ss_pred EEEEEEEcCCCCCCC-CCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEE-ccCCc
Q 008558 49 IELSFSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD-VDTQF 126 (561)
Q Consensus 49 vel~isa~~L~~~D~-~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD-~D~~~ 126 (561)
+|+ |.|++|..+-- -+.++|||+||+.. .+.-.-..+|+...+|++|.+-....|+-... .-.|.+.||- +-.
T Consensus 273 vEi-i~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~gdygR-- 347 (405)
T KOG2060|consen 273 VEI-IRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVWGDYGR-- 347 (405)
T ss_pred EEE-EecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEeccccc--
Confidence 444 78999987653 35789999999987 34444578999999999998887665443221 2378888884 222
Q ss_pred ccccccccccccceeeeeeEeechhhhccC-CeeEEEEccc
Q 008558 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDLVR 166 (561)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~~~L~el~~~~-~~~~~~~L~~ 166 (561)
...+.|+|.+.+-+++|--+. -...|++|..
T Consensus 348 ---------md~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 348 ---------MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ---------cchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 246779999999999986544 4457998854
No 286
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=94.31 E-value=0.51 Score=45.22 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=80.8
Q ss_pred eEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 008558 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (561)
Q Consensus 351 ~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~ 430 (561)
.+++|+|.++|=- .+.+.+|++-.-..|...+.+-+..|-......-.||++..+. .||---+.|.-.
T Consensus 2 ~l~lavDlSgSM~--------~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~----~~~lt~d~p~t~ 69 (191)
T cd01455 2 RLKLVVDVSGSMY--------RFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPC----VPFVKTNHPPKN 69 (191)
T ss_pred ceEEEEECcHhHH--------HHhccCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccc----cCccccccCccc
Confidence 4789999999521 2221233444445566666666665566677778888776221 122111111111
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHH-hhccccCCceEEEEEEeCCcccCHH-HHHH-HHHHccCCC
Q 008558 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAG-QSLANHGQKYFVLLIITDGVVTDLQ-ETKD-ALVKASDLP 507 (561)
Q Consensus 431 ~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~-~~~~~~~~~y~vlliltdg~i~d~~-~t~~-~i~~as~~p 507 (561)
+..-++=+.+...+ .++-+.|+.-- .-|..+++.-+ ++ +.+ =-|+++||||.-+.-. .-.+ +-.-|.+.-
T Consensus 70 d~~~~~~l~~~l~~--~q~g~ag~~Ta-dAi~~av~rl~~~~---~a~-~kvvILLTDG~n~~~~i~P~~aAa~lA~~~g 142 (191)
T cd01455 70 NKERLETLKMMHAH--SQFCWSGDHTV-EATEFAIKELAAKE---DFD-EAIVIVLSDANLERYGIQPKKLADALAREPN 142 (191)
T ss_pred chhHHHHHHHHHHh--cccCccCccHH-HHHHHHHHHHHhcC---cCC-CcEEEEEeCCCcCCCCCChHHHHHHHHHhCC
Confidence 11111111222112 23455676333 66666666544 33 122 3488999999853221 2233 222344556
Q ss_pred eEEEEEeecCCCchhhhhcc
Q 008558 508 LSILIIGVGGADFKEMEILD 527 (561)
Q Consensus 508 ~siiivGvG~~~f~~m~~ld 527 (561)
+=|=-||||..|.+.++.+-
T Consensus 143 V~iytIgiG~~d~~~l~~iA 162 (191)
T cd01455 143 VNAFVIFIGSLSDEADQLQR 162 (191)
T ss_pred CEEEEEEecCCCHHHHHHHH
Confidence 66667777876666665544
No 287
>PRK10997 yieM hypothetical protein; Provisional
Probab=93.49 E-value=1.4 Score=48.24 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=84.2
Q ss_pred eeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHH-HHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 008558 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRA-ILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (561)
Q Consensus 349 qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~a-i~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~ 427 (561)
.-.++|.||-++ |++ |..-.|..| ..+++.+...-+ ..+-++.|+... .++++.+
T Consensus 323 kGpiII~VDtSG---------SM~-----G~ke~~AkalAaAL~~iAl~q~--dr~~li~Fs~~i------~~~~l~~-- 378 (487)
T PRK10997 323 RGPFIVCVDTSG---------SMG-----GFNEQCAKAFCLALMRIALAEN--RRCYIMLFSTEV------VTYELTG-- 378 (487)
T ss_pred CCcEEEEEECCC---------CCC-----CCHHHHHHHHHHHHHHHHHhcC--CCEEEEEecCCc------eeeccCC--
Confidence 467899999999 443 123466666 444555443322 346788888751 1233432
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCH-HHHHHHHHHccC-
Q 008558 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL-QETKDALVKASD- 505 (561)
Q Consensus 428 ~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~-~~t~~~i~~as~- 505 (561)
-.|+..+++.-.. .+.|.|++++.++++++..++.. -.=..++||||+..... ++.+++|...-+
T Consensus 379 ----~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~----~r~adIVVISDF~~~~~~eel~~~L~~Lk~~ 445 (487)
T PRK10997 379 ----PDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGRE----WFDADAVVISDFIAQRLPDELVAKVKELQRQ 445 (487)
T ss_pred ----ccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccc----cCCceEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 3477776665533 36899999999999998876431 22356999999966442 444444444322
Q ss_pred CCeEEEEEeecC-CCchhhhhcc
Q 008558 506 LPLSILIIGVGG-ADFKEMEILD 527 (561)
Q Consensus 506 ~p~siiivGvG~-~~f~~m~~ld 527 (561)
.-..+.=|-||+ +.=.-|+.+|
T Consensus 446 ~~~rf~~l~i~~~~~p~l~~ifD 468 (487)
T PRK10997 446 HQHRFHAVAMSAHGKPGIMRIFD 468 (487)
T ss_pred cCcEEEEEEeCCCCCchHHHhcC
Confidence 334444444454 3335567666
No 288
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=0.11 Score=53.83 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=78.4
Q ss_pred ccccceeEeeecCCCcCC-CCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceecceeeeeecCCCCccEEEEEE-e
Q 008558 200 SKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECF-N 277 (561)
Q Consensus 200 ~~~~v~~~i~a~nL~~~d-~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~ef~~~~~~l~d~~~~L~ieV~-D 277 (561)
...+-+.++.|++|..+- .-..++||+++|+.. ++.-+-.-+|+...+|+.|.+..-....+ ......|.+.|| |
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq~l~f~~--sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQQLSFDQ--SPPGKYLQGTVWGD 344 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhhhhhhcc--CCCccEEEEEEecc
Confidence 345666788999998765 233689999999976 24334567999999999888774111111 234678999999 7
Q ss_pred ccCCCCCceeEEEEEehhhHhhcc-CCCceeeeeccc
Q 008558 278 FNSNGKHDLIGKVQKSLADLEKLH-SSGQGQNLFLST 313 (561)
Q Consensus 278 ~d~~g~~d~IG~~~i~l~~l~~~~-~~~~~~~l~n~~ 313 (561)
+-+.....|+|.+++-+.+|.-.. -...||.++-..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 888888899999999999996222 123567776544
No 289
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=91.41 E-value=3.6 Score=48.21 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=89.3
Q ss_pred ccccceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHH-hhhcccccCCCCcceeeecccCCCCCceeEE
Q 008558 343 YLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEV-GEVLQVYDSDKRFPAWGFGARPIDGPVSHCF 421 (561)
Q Consensus 343 yi~gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i-~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f 421 (561)
+++....+ +++.||-++| + ....+++.-.+|++.. ..++. .+-++-++.|+..+. -..
T Consensus 299 ~lq~~~r~-VVLVLDvSGS---------M---~g~dRL~~lkqAA~~fL~~~l~---~~DrVGLVtFsssA~-----vl~ 357 (863)
T TIGR00868 299 LLKIRQRI-VCLVLDKSGS---------M---TVEDRLKRMNQAAKLFLLQTVE---KGSWVGMVTFDSAAY-----IKN 357 (863)
T ss_pred ecccCCce-EEEEEECCcc---------c---cccCHHHHHHHHHHHHHHHhCC---CCCEEEEEEECCcee-----Eee
Confidence 34444433 7889999995 2 1111234455565543 33433 445788999987611 112
Q ss_pred eCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHH
Q 008558 422 NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALV 501 (561)
Q Consensus 422 ~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~ 501 (561)
+|.-- .+ ....++-...++ ....|-|++..-|+.|.+..++.... ..=..+++||||+-++..+..+++.
T Consensus 358 pLt~I--ts-----~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~--~~~~~IILLTDGedn~~~~~l~~lk 427 (863)
T TIGR00868 358 ELIQI--TS-----SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQS--TDGSEIVLLTDGEDNTISSCFEEVK 427 (863)
T ss_pred ccccC--Cc-----HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccc--cCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 22210 00 122333333443 34688999999999999877654211 1124678889999877666555543
Q ss_pred HccCCCeEEEEEeecCCCchhhhhcccCC
Q 008558 502 KASDLPLSILIIGVGGADFKEMEILDADK 530 (561)
Q Consensus 502 ~as~~p~siiivGvG~~~f~~m~~ld~d~ 530 (561)
..++.|--||+|.+.=..|+.|-...
T Consensus 428 ---~~gVtI~TIg~G~dad~~L~~IA~~T 453 (863)
T TIGR00868 428 ---QSGAIIHTIALGPSAAKELEELSDMT 453 (863)
T ss_pred ---HcCCEEEEEEeCCChHHHHHHHHHhc
Confidence 34777888899976556676665333
No 290
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.86 E-value=0.32 Score=55.38 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=63.8
Q ss_pred EEEE-EEEcCCCCCCCCCCCCcEEEEEEEc-CCCceeeEeeeeeec-CCCCCceeee-EEEE-EeeCceeEEEEEEEEcc
Q 008558 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVL-NSLNPTWITK-HIIT-YQFEVVQTLVFRIYDVD 123 (561)
Q Consensus 49 vel~-isa~~L~~~D~~sksDPyv~v~~~~-~~~~~~~~~rTevi~-n~lNP~w~e~-f~i~-~~fe~~q~L~~~VyD~D 123 (561)
++++ |++.-|.+++. --||.|-+-+ +...-....||.++. |.+||+|++. |.|. +-..+...|+|.||+..
T Consensus 705 ~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred EEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 4444 78888877764 3799997654 233334678999887 5599999976 5553 44455668999999976
Q ss_pred CCcccccccccccccceeeeeeEeechhhhcc
Q 008558 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (561)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~ 155 (561)
+ .|||+-.+++..|..+
T Consensus 781 g---------------K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 G---------------KFIGQRILPVDGLNAG 797 (1189)
T ss_pred C---------------ceeeeeccchhcccCc
Confidence 5 3899999999888654
No 291
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=90.83 E-value=0.33 Score=40.26 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=56.2
Q ss_pred EEEcCCCCCCCCCCCCc--EEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCcee--EEEEEEEEccCCccc
Q 008558 53 FSAADLRDRDVLSKSDP--MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHN 128 (561)
Q Consensus 53 isa~~L~~~D~~sksDP--yv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q--~L~~~VyD~D~~~~~ 128 (561)
+.|++|.-....+ -.| |++-.+.-+.. ...||.+.....||+|.|+|.|.......| .|-|.||..-
T Consensus 6 ~~c~d~s~~~~~~-e~~~i~ikg~~tl~kp---v~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~----- 76 (103)
T cd08684 6 LKCKDLSWPSSCG-ENPTIYIKGILTLPKP---VHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT----- 76 (103)
T ss_pred EEecccccccccC-cCCeeEEEEEEecCCC---ccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC-----
Confidence 6888886543322 234 33333322111 477999999999999999998765544433 7778888722
Q ss_pred ccccccccccceeeeeeEeechhhh
Q 008558 129 VDVKTLKLVEQQFLGEATCTLSQIV 153 (561)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~~~L~el~ 153 (561)
.+...||.|.+.+..+-
T Consensus 77 --------~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 77 --------PRKRTIGECSLSLRTLS 93 (103)
T ss_pred --------CccceeeEEEeecccCC
Confidence 46789999999887663
No 292
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=90.16 E-value=4.8 Score=38.28 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=36.6
Q ss_pred ceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccCCcccccccccccccceeeeeeEeechh
Q 008558 81 ALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 81 ~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
.......|-+...+.+|.|++.|.+....+. ...|.|.+|+..... +-.+...+|.+.++|-+
T Consensus 56 ~~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~--------~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 56 SFVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE--------SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS--------SS-SS-EEEEEEEESB-
T ss_pred CcceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc--------ccCccceeEEEEEEeee
Confidence 3456778889999999999999988776544 459999999987541 00112799999999876
No 293
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=90.08 E-value=1.2 Score=39.74 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeeec-----CC--------CCccEEEEEEeccCC------
Q 008558 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-----GS--------KDSPLIIECFNFNSN------ 281 (561)
Q Consensus 222 sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~l-----~d--------~~~~L~ieV~D~d~~------ 281 (561)
-++|+.+....-.+ ....+|.++.++-.|.|+. ++++...+ +. ....+.++||.....
T Consensus 33 VN~yv~i~lSFl~~--~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 33 VNSYVTIHLSFLPE--KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cceEEEEEeccCCC--CceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence 46899998644112 2467999999999999996 55554422 11 256789999986532
Q ss_pred ----CCCceeEEEEEehhhHh
Q 008558 282 ----GKHDLIGKVQKSLADLE 298 (561)
Q Consensus 282 ----g~~d~IG~~~i~l~~l~ 298 (561)
..|-+||.+.+++.+|.
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll 131 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLL 131 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHh
Confidence 34568999999999996
No 294
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=88.58 E-value=0.51 Score=49.56 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=73.7
Q ss_pred EeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeeeee---cC------CCCccEEEEEE
Q 008558 207 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ---VG------SKDSPLIIECF 276 (561)
Q Consensus 207 ~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~~~---l~------d~~~~L~ieV~ 276 (561)
++++.+++-..--.--|-|+++...-++ ..-..-+|.+++.|..|.|++ |.+.++. ++ -...-++||+|
T Consensus 373 ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeif 451 (523)
T KOG3837|consen 373 IVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIF 451 (523)
T ss_pred HhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEe
Confidence 4566666532211123567766543332 123456999999999999998 7766543 10 01346899999
Q ss_pred eccC-CCCCceeEEEEEehhhHhhccCCCceeeeecccccCCCCcccccccEEE
Q 008558 277 NFNS-NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (561)
Q Consensus 277 D~d~-~g~~d~IG~~~i~l~~l~~~~~~~~~~~l~n~~~~~K~~~~~~~G~i~l 329 (561)
.... +.+|.++|.+.+.+.-|.........+++.+-+| .+.|.|.+
T Consensus 452 hkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK-------~vGGkLev 498 (523)
T KOG3837|consen 452 HKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRK-------AVGGKLEV 498 (523)
T ss_pred eccccccccceeceeeeeehhhhcccchhhceecccccc-------ccCCeeEE
Confidence 8654 3578999999999999976555555677766432 23677766
No 295
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.32 E-value=1.3 Score=41.26 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=48.1
Q ss_pred CCCceEEEEEEcCCCcee-eEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEeccCCCCCceeEEEEEehhh
Q 008558 221 RNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (561)
Q Consensus 221 ~sDPy~~i~~~~~~g~~~-~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~ 296 (561)
.+|-|+.+.+.. +++.+ ...+|..+.-+..+.||| |-+..+.| ..+..|.|.|||.+..+++..||.+.++|=+
T Consensus 29 ~~~l~V~~~l~~-~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dL-P~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFD-DGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDL-PRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEE-CCEeccCcEEccccCCCCCcccceeEEcccchhcC-ChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 366777776544 23221 233555555556788999 33444444 2357899999999876677899999887754
No 296
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=88.15 E-value=2.2 Score=44.62 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=68.3
Q ss_pred ceeEeeecCCCcCCCCCCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec---ceeeeeec---CCCCccEEEEEEe
Q 008558 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQV---GSKDSPLIIECFN 277 (561)
Q Consensus 204 v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e---f~~~~~~l---~d~~~~L~ieV~D 277 (561)
+..+++|++.+.. ..-|.+.....+ | .+..|+.+..+-.|.|+. .++....+ .-...||+++||-
T Consensus 3 vl~i~egr~F~~~----~~~~~vv~a~~n--g---~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 3 VLSILEGRNFPQR----PRHPIVVEAKFN--G---ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEecccCCCCC----CCccEEEEEEeC--C---ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 4457889988865 223444444433 3 367888888888888884 22222222 2237899999999
Q ss_pred cc-CCCCCceeEEEEEehhhH---hhc--cCCCceeeeeccc
Q 008558 278 FN-SNGKHDLIGKVQKSLADL---EKL--HSSGQGQNLFLST 313 (561)
Q Consensus 278 ~d-~~g~~d~IG~~~i~l~~l---~~~--~~~~~~~~l~n~~ 313 (561)
.| ..+..+.||.+-++|... ... ....+|++|+..+
T Consensus 74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~ 115 (340)
T PF12416_consen 74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS 115 (340)
T ss_pred ecCCCCcceeccEEEEEccccccccccccccCCCeeEccccc
Confidence 88 567789999999999988 422 2334799998863
No 297
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=86.44 E-value=2.5 Score=39.42 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=52.1
Q ss_pred CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee---CceeEEEEEEEEccCCccccccccccccccee
Q 008558 65 SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQF 141 (561)
Q Consensus 65 sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f---e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~ 141 (561)
..+|-||.+.+-.+...-....+|..+.-+..+.|+|.+.|.... .....|.|.|||.+.. ++...
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-----------~~~~~ 96 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-----------GKAVP 96 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-----------CCceE
Confidence 457788888665422111223467666666779999998776443 3445899999998754 46779
Q ss_pred eeeeEeechh
Q 008558 142 LGEATCTLSQ 151 (561)
Q Consensus 142 LG~~~~~L~e 151 (561)
+|.+.++|-.
T Consensus 97 vg~~~~~lFd 106 (159)
T cd08397 97 FGGTTLSLFN 106 (159)
T ss_pred EEEEEEeeEC
Confidence 9999888743
No 298
>KOG4428 consensus Inositol-polyphosphate 4-phosphatase [Signal transduction mechanisms]
Probab=86.10 E-value=1.8 Score=47.72 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=59.9
Q ss_pred ccEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEE--EeeCceeEEEEEEEEcc
Q 008558 46 FSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT--YQFEVVQTLVFRIYDVD 123 (561)
Q Consensus 46 ~~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~--~~fe~~q~L~~~VyD~D 123 (561)
.+.+|+.++| ..-...|+.-|+.+.+..+...|++...|+++..+.||.|-....+. +.......+++.|||+.
T Consensus 34 ep~lEf~Lac----tp~~drK~nt~va~sv~hp~~~~t~~s~tei~egt~~piFL~~~~f~~~~~in~~T~~kl~vydvk 109 (813)
T KOG4428|consen 34 EPILEFSLAC----TPSLDRKPNTFVAVSVTHPQAFWTKHSQTEIIEGTNNPIFLSSIAFFQDSLINQMTQVKLSVYDVK 109 (813)
T ss_pred ccceeEEecc----CceeccCCCceEEEEeeccceeeeeccCceeeeccCCceeeeehhhhhhcchhhhhheeEEEEeec
Confidence 3789999999 23345689999999988766779999999999999999999876542 33334457899999976
Q ss_pred CC
Q 008558 124 TQ 125 (561)
Q Consensus 124 ~~ 125 (561)
..
T Consensus 110 D~ 111 (813)
T KOG4428|consen 110 DR 111 (813)
T ss_pred cc
Confidence 54
No 299
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=85.54 E-value=7 Score=38.38 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~ 429 (561)
..+++.+|-++| + -.|...+.++...+. +.-..+-+|-|+.....-. + .+.. .
T Consensus 58 ~~lvvl~DvSGS---------M---------~~~s~~~l~~~~~l~--~~~~~~~~f~F~~~l~~vT--~--~l~~--~- 110 (222)
T PF05762_consen 58 RRLVVLCDVSGS---------M---------AGYSEFMLAFLYALQ--RQFRRVRVFVFSTRLTEVT--P--LLRR--R- 110 (222)
T ss_pred ccEEEEEeCCCC---------h---------HHHHHHHHHHHHHHH--HhCCCEEEEEEeeehhhhh--h--hhcc--C-
Confidence 478889998884 3 234444444333322 1223688999987621111 0 1110 1
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCC-cccCHHHHHHHHH
Q 008558 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALV 501 (561)
Q Consensus 430 ~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg-~i~d~~~t~~~i~ 501 (561)
...+.+..-.... ..++|.|++...++++.+...+. .-.-+++|||||| +-.+-++..+.+.
T Consensus 111 ----~~~~~l~~~~~~~--~~~~GgTdi~~aL~~~~~~~~~~----~~~~t~vvIiSDg~~~~~~~~~~~~l~ 173 (222)
T PF05762_consen 111 ----DPEEALARLSALV--QSFGGGTDIGQALREFLRQYARP----DLRRTTVVIISDGWDTNDPEPLAEELR 173 (222)
T ss_pred ----CHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcc----cccCcEEEEEecccccCChHHHHHHHH
Confidence 2233333322222 23999999999999999876532 1257899999999 5555444444433
No 300
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=85.38 E-value=8.1 Score=37.00 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=34.0
Q ss_pred eeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccC
Q 008558 83 VEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDT 124 (561)
Q Consensus 83 ~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~ 124 (561)
.-..+|-|..-+-+|.|+|++.+....+. .-.|+|.++.+..
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 34678999999999999999988876653 3489999998654
No 301
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=85.32 E-value=2.5 Score=41.25 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=35.3
Q ss_pred HHHHHHHhhccccCCceEEEEEEeCCcccC---------------HHHHHHHHHHccCCCeEEEEEeecCC
Q 008558 463 NAALIAGQSLANHGQKYFVLLIITDGVVTD---------------LQETKDALVKASDLPLSILIIGVGGA 518 (561)
Q Consensus 463 ~~~~~a~~~~~~~~~~y~vlliltdg~i~d---------------~~~t~~~i~~as~~p~siiivGvG~~ 518 (561)
+|+.+|.+...+....=-||++|+||...| ++++++.|-.. -|+.++-||||.+
T Consensus 120 eAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~--~~Vel~aiGIg~D 188 (219)
T PF11775_consen 120 EALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETR--SDVELIAIGIGHD 188 (219)
T ss_pred HHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhcc--CCcEEEEEEcCCC
Confidence 455555555444445556999999999875 34444444332 4888999999864
No 302
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=84.19 E-value=5.7 Score=39.66 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=89.8
Q ss_pred EEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc-ccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCc
Q 008558 353 MVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL-QVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCE 431 (561)
Q Consensus 353 ~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il-~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~~ 431 (561)
++++|-++| + .- .-.-+.|=-++...| ..|-.--++.+.+|=+.-.. -..|-+-+
T Consensus 82 vfvVDASgS---------M---~~---~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~----lll~pT~s----- 137 (261)
T COG1240 82 VFVVDASGS---------M---AA---RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAE----LLLPPTSS----- 137 (261)
T ss_pred EEEEeCccc---------c---hh---HHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcce----EEeCCccc-----
Confidence 568898884 2 11 112344444444433 35766667999999654111 01111110
Q ss_pred ccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccC------HHHHHHHHHHccC
Q 008558 432 VEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD------LQETKDALVKASD 505 (561)
Q Consensus 432 ~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d------~~~t~~~i~~as~ 505 (561)
++.-.+.|..+...|-|-+++-|..+.+...+....+...=.++++||||..++ ..++.++-.....
T Consensus 138 -------v~~~~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~ 210 (261)
T COG1240 138 -------VELAERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRL 210 (261)
T ss_pred -------HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhh
Confidence 333457788899999999999999999998888655666778999999998644 3567777776777
Q ss_pred CCeEEEEEeecCCC
Q 008558 506 LPLSILIIGVGGAD 519 (561)
Q Consensus 506 ~p~siiivGvG~~~ 519 (561)
.++=+++|......
T Consensus 211 ~g~~~lvid~e~~~ 224 (261)
T COG1240 211 RGIQLLVIDTEGSE 224 (261)
T ss_pred cCCcEEEEecCCcc
Confidence 78877888776554
No 303
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=83.85 E-value=12 Score=35.84 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=49.2
Q ss_pred cEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC--ceeEEEEEEEEccC
Q 008558 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDT 124 (561)
Q Consensus 47 ~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe--~~q~L~~~VyD~D~ 124 (561)
..|+++|+-++-... ...|.-.++.+. .+.+.....|.|...+-+|.|.+.+.+....+ ....|.|..|+++-
T Consensus 24 RNI~V~V~lrd~D~~----~~~~l~~I~~g~-g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 24 RNIAVCIEFRDSDEE----DAKPLKCIYYGP-GGGFTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred ccEEEEEEEEeCCCC----cCccceEEecCC-CCCcceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 456666665442211 233443444443 23377899999999999999999998765544 45599999999863
No 304
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=82.56 E-value=12 Score=35.59 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=37.3
Q ss_pred ceeeEeeeeeecCCCCCceeeeEEEEEeeC--ceeEEEEEEEEccCC
Q 008558 81 ALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDTQ 125 (561)
Q Consensus 81 ~~~~~~rTevi~n~lNP~w~e~f~i~~~fe--~~q~L~~~VyD~D~~ 125 (561)
.+.....|.|...+-+|.|.+.+.+....+ ....|.|++|+++..
T Consensus 51 ~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~ 97 (179)
T cd08696 51 EFLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQ 97 (179)
T ss_pred ccceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeecc
Confidence 367889999999999999999998876654 345999999997753
No 305
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=80.56 E-value=15 Score=34.08 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc-------------eeEEEEEEEEccCCcccccc
Q 008558 65 SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-------------VQTLVFRIYDVDTQFHNVDV 131 (561)
Q Consensus 65 sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~-------------~q~L~~~VyD~D~~~~~~~~ 131 (561)
+..+....+++.=. + +.+||..+..+.+|.|++.|-|+..-+. .+++.+.|.-.|..
T Consensus 30 ~~~~s~~~l~l~f~-~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~------ 99 (156)
T PF15627_consen 30 GQVCSTFTLHLHFR-G---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPS------ 99 (156)
T ss_pred CCCceEEEEEEEec-C---ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCC------
Confidence 45556666665431 1 6899999999999999999987754432 35788888877754
Q ss_pred cccccccceeeeeeEeechhhhccCCe--eEEEEccccccccccccccCCCCCCCcccceEEeecceecc
Q 008558 132 KTLKLVEQQFLGEATCTLSQIVTRKNR--SLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECIN 199 (561)
Q Consensus 132 ~~~~l~~~d~LG~~~~~L~el~~~~~~--~~~~~L~~~~~~i~~~~~~~~~~~~~~~~G~I~i~~e~i~~ 199 (561)
+...++|+-.+.=..++.+... ....+|... ... .....|.|.++.|-++.
T Consensus 100 -----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----------~~e--~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 100 -----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----------GPE--SKVPVGILDLRLELLPN 152 (156)
T ss_pred -----CceEeeeeceehHHHHhccCCCccceeEEEecc----------CCC--CccceeEEEEEEEeecC
Confidence 4558999988888888877655 334445330 110 11457889888876554
No 306
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=80.54 E-value=6.6 Score=36.15 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee---CceeEEEEEEEEccCCcccccccccccccceee
Q 008558 66 KSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFL 142 (561)
Q Consensus 66 ksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f---e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~L 142 (561)
.++-||.+.+-.+...-.....|.......++.|+|.+.|+... .....|.|.||+.+.. .-.+...|
T Consensus 27 ~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~---------~~~~~~~i 97 (156)
T cd08380 27 DLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEP---------GSKKEVPL 97 (156)
T ss_pred ceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecC---------CCCcceEE
Confidence 45667776544322111234455555545789999998776432 3445899999998754 00246799
Q ss_pred eeeEeechh
Q 008558 143 GEATCTLSQ 151 (561)
Q Consensus 143 G~~~~~L~e 151 (561)
|.+.++|=+
T Consensus 98 G~~~~~lFd 106 (156)
T cd08380 98 GWVNVPLFD 106 (156)
T ss_pred EEEeEEeEc
Confidence 999988744
No 307
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=79.90 E-value=4.7 Score=33.68 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=55.5
Q ss_pred eEeeecCCCcCCCCCC-CCceEEEEEEcCCCceeeEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEeccCC
Q 008558 206 LILRCSDLDCKDLFSR-NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSN 281 (561)
Q Consensus 206 ~~i~a~nL~~~d~~g~-sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~~ 281 (561)
.++.+++|.-....|. ..-|++-...-. + -..+||.+.....||.|+| |.+.++.|. .-.|.|.|+. ..
T Consensus 4 tv~~c~d~s~~~~~~e~~~i~ikg~~tl~--k-pv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~--~V~L~fsv~~--~~ 76 (103)
T cd08684 4 TVLKCKDLSWPSSCGENPTIYIKGILTLP--K-PVHFKSSAKEGSNDIEFMETFVFAIKLQNLQ--TVRLVFKIQT--QT 76 (103)
T ss_pred EEEEecccccccccCcCCeeEEEEEEecC--C-CccccchhhcCCCChhHHHHHHHHHHHhhcc--ceEEEEEeec--cC
Confidence 3556666654333331 223554444331 1 2357899988999999999 444555443 4578899987 34
Q ss_pred CCCceeEEEEEehhhH
Q 008558 282 GKHDLIGKVQKSLADL 297 (561)
Q Consensus 282 g~~d~IG~~~i~l~~l 297 (561)
-+.+.||.|.++++.+
T Consensus 77 ~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 77 PRKRTIGECSLSLRTL 92 (103)
T ss_pred CccceeeEEEeecccC
Confidence 5679999999999987
No 308
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.77 E-value=18 Score=34.86 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=48.0
Q ss_pred cEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccC
Q 008558 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDT 124 (561)
Q Consensus 47 ~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~ 124 (561)
..||++++-++= .|..=|-| +... ......-..+|-|..-+-+|.|+|++.+....+. .-+|+|.++.+..
T Consensus 23 rNIeVtv~vr~~-----~G~~i~~~-i~~g-sg~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 23 KNVEVTVSVCNE-----DGKIIPGV-ISLG-AGEEPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred ceEEEEEEEECC-----CCCCCcee-EEcC-CCCCcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 578888887661 12222222 2222 2334556789999999999999999988776553 3489999998754
No 309
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=79.17 E-value=47 Score=29.68 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=46.8
Q ss_pred Eeeeeeec-CCCCCceeeeEEEEEeeC--------ceeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhcc
Q 008558 85 VGRTEVVL-NSLNPTWITKHIITYQFE--------VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (561)
Q Consensus 85 ~~rTevi~-n~lNP~w~e~f~i~~~fe--------~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~ 155 (561)
.++|+... .+-.-.|++.|.+.+.+- +.-.++|.|+..... ++...+|.+.++|++....
T Consensus 39 ~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~-----------~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 39 SGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGS-----------GKKKVLGKVSINLAEYANE 107 (143)
T ss_pred ceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCC-----------CccceEEEEEEEHHHhhCc
Confidence 35555443 456679999997754331 123788999987532 2236999999999999885
Q ss_pred C--CeeEEEEccc
Q 008558 156 K--NRSLTLDLVR 166 (561)
Q Consensus 156 ~--~~~~~~~L~~ 166 (561)
. .....++|..
T Consensus 108 ~~~~~~~~~~l~~ 120 (143)
T PF10358_consen 108 DEEPITVRLLLKK 120 (143)
T ss_pred CCCcEEEEEeCcc
Confidence 3 3445666644
No 310
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=76.14 E-value=15 Score=33.33 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=39.7
Q ss_pred EeeeeeecCC-CCCceeeeEEEEEee---CceeEEEEEEEEccCCcccccccccccccc----eeeeeeEeechhh
Q 008558 85 VGRTEVVLNS-LNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQ----QFLGEATCTLSQI 152 (561)
Q Consensus 85 ~~rTevi~n~-lNP~w~e~f~i~~~f---e~~q~L~~~VyD~D~~~~~~~~~~~~l~~~----d~LG~~~~~L~el 152 (561)
+.+|..+.-+ .+|.|++.+.|.... .....|.|.||..+.. ... ..||.+.++|=+-
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-----------~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-----------KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-----------TTT--EEEEEEEEEEESB-T
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-----------CccccceeEEEEEEEEeECC
Confidence 4477777666 899999998877543 3456999999998764 222 7999999987543
No 311
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=75.86 E-value=13 Score=34.66 Aligned_cols=89 Identities=13% Similarity=0.206 Sum_probs=51.4
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCcee-eEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEec
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNF 278 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~-~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~ 278 (561)
+.+.+++++++.-.+ .+|-|+.+.+.. +++.+ ..-.|..+.- .++.|+| |.+..+.| ..+..|.|.+|+.
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~-g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dL-Pr~ArL~iti~~~ 83 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYH-GGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDL-PRSARLCLSICSV 83 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEE-CCEEccCeeEecccCC-CCCccceeEEcccchhcC-ChhheEEEEEEEE
Confidence 344456667665432 357788876544 23222 1123333332 6799998 44444444 2356799999997
Q ss_pred cCCC----CCceeEEEEEehhhH
Q 008558 279 NSNG----KHDLIGKVQKSLADL 297 (561)
Q Consensus 279 d~~g----~~d~IG~~~i~l~~l 297 (561)
.... ....||.+.++|=+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 235689888887553
No 312
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=75.16 E-value=23 Score=33.50 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=39.9
Q ss_pred EeeeeeecCCCCCceeeeEEEEEeeCc--eeEEEEEEEEccCCcccccccccccccceeeeeeEeechh
Q 008558 85 VGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 85 ~~rTevi~n~lNP~w~e~f~i~~~fe~--~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
..-|.++..+-+|.|++.|.+....+. ...|.|.+|+.+...+. .-.....+|.+.++|-+
T Consensus 53 s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~------~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQ------GDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEcccccccc------CCCccceEEEEEEeccc
Confidence 333444444499999999988766553 56999999998753100 01335678877777653
No 313
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=75.04 E-value=15 Score=38.49 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=68.7
Q ss_pred EEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee-------CceeEEEEEEEE
Q 008558 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-------EVVQTLVFRIYD 121 (561)
Q Consensus 50 el~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f-------e~~q~L~~~VyD 121 (561)
-|+ +++++.+... +-.-.+...+.+ +...|+.+..+-.|.|+..+..++.- -..++||+++|-
T Consensus 3 vl~i~egr~F~~~~---~~~~vv~a~~ng------~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 3 VLSILEGRNFPQRP---RHPIVVEAKFNG------ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEecccCCCCCC---CccEEEEEEeCC------ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 344 4788877652 233455556643 68999999999999999988655432 124589999999
Q ss_pred ccCCcccccccccccccceeeeeeEeechhh---hcc--CCeeEEEEccc
Q 008558 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQI---VTR--KNRSLTLDLVR 166 (561)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el---~~~--~~~~~~~~L~~ 166 (561)
.|... +..+-+|.+.++|... ... .-...|++|..
T Consensus 74 ~~~~~----------~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 74 VDGST----------GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLS 113 (340)
T ss_pred ecCCC----------CcceeccEEEEEccccccccccccccCCCeeEccc
Confidence 98431 5788999999999887 332 23447988844
No 314
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=74.58 E-value=19 Score=33.51 Aligned_cols=94 Identities=16% Similarity=0.074 Sum_probs=55.5
Q ss_pred cEEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee---CceeEEEEEEEEc
Q 008558 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDV 122 (561)
Q Consensus 47 ~~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f---e~~q~L~~~VyD~ 122 (561)
.++.+. ++++++.-.+ .+|-||.+.+-.+...-.....|..+.. .+|.|+|.+.|+... .....|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 345555 4566666433 4688888865442211112234554443 679999998776433 3455999999997
Q ss_pred cCCcccccccccccccceeeeeeEeechh
Q 008558 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
..... +-.+...+|.+.++|-+
T Consensus 84 ~~~~~-------~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKG-------AKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccC-------CCCceEEEEEEEEEEEC
Confidence 64200 00233579999888743
No 315
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=73.07 E-value=11 Score=34.65 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=46.2
Q ss_pred CCceEEEEEEcCCCc-eeeEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEeccCCC--CCceeEEEEEehh
Q 008558 222 NDPFLVISKIVESGT-HIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNG--KHDLIGKVQKSLA 295 (561)
Q Consensus 222 sDPy~~i~~~~~~g~-~~~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~~g--~~d~IG~~~i~l~ 295 (561)
.+-|+.+.+.. +++ -.....|.......++.|+| |.+....| ..+..|.|.+|+.+..+ .+..||.+.++|=
T Consensus 28 ~~l~V~~~l~~-g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~L-P~~arL~itl~~~~~~~~~~~~~iG~~~~~lF 105 (156)
T cd08380 28 LKLYVRVQLYH-GGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDL-PREARLCLSIYAVSEPGSKKEVPLGWVNVPLF 105 (156)
T ss_pred eeEEEEEEEEE-CCEEccCceeccCCcCCCCCcccceeEccchhhcC-ChhheEEEEEEEEecCCCCcceEEEEEeEEeE
Confidence 44566664443 122 12344555554446899998 33344444 23567999999987654 4688999999876
Q ss_pred hH
Q 008558 296 DL 297 (561)
Q Consensus 296 ~l 297 (561)
+-
T Consensus 106 d~ 107 (156)
T cd08380 106 DY 107 (156)
T ss_pred cc
Confidence 54
No 316
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=73.02 E-value=22 Score=33.82 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=46.9
Q ss_pred cEEEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee---CceeEEEEEEEEcc
Q 008558 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVD 123 (561)
Q Consensus 47 ~~vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f---e~~q~L~~~VyD~D 123 (561)
..+++.|.+-+.++.+.....--||.+.+-. ++.....-+|....-+.+|.|+|.+.|+... .....|.|.||+..
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4577777776766654332223455553332 2221122367777777889999987765433 34559999999974
Q ss_pred C
Q 008558 124 T 124 (561)
Q Consensus 124 ~ 124 (561)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
No 317
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=72.93 E-value=15 Score=34.58 Aligned_cols=90 Identities=13% Similarity=0.243 Sum_probs=51.1
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEcCCCcee-eEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEec
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNF 278 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~-~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~ 278 (561)
+.+.++.+.++...+ ...+-|+++.+.. +++.+ ....|..+.-+..+.|+| |.+.++.| ..+..|-|.+|+.
T Consensus 10 f~i~i~~~~~~~~~~--~~~~l~V~~~lyh-G~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dL-Pr~ArLciti~~~ 85 (173)
T cd08693 10 FSITLHKISNLNAAE--RTMKVGVQAGLFH-GGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDL-PRMARLCFAIYEV 85 (173)
T ss_pred EEEEEEEeccCccCC--CCceEEEEEEEEE-CCEEccCceEccccCCCCccccceeEEcccchhcC-ChhHeEEEEEEEe
Confidence 444556667776422 2345677765443 13222 123455444456799998 44455555 2356789999997
Q ss_pred cCCC----------------CCceeEEEEEehhh
Q 008558 279 NSNG----------------KHDLIGKVQKSLAD 296 (561)
Q Consensus 279 d~~g----------------~~d~IG~~~i~l~~ 296 (561)
.... .+..||.+.++|=+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6422 23567777776644
No 318
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=71.97 E-value=18 Score=34.06 Aligned_cols=102 Identities=13% Similarity=0.172 Sum_probs=55.7
Q ss_pred EEEEE-EEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEe---eCceeEEEEEEEEcc
Q 008558 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ---FEVVQTLVFRIYDVD 123 (561)
Q Consensus 48 ~vel~-isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~---fe~~q~L~~~VyD~D 123 (561)
.+.++ +++.+|...+ ..++-||.+.+-.+...-.....|..+.-+-+|.|+|.+.|+.. ......|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 45555 3566666422 34566777644332211122346666665677999999877543 244559999999976
Q ss_pred CCcccccc-----cccccccceeeeeeEeechh
Q 008558 124 TQFHNVDV-----KTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 124 ~~~~~~~~-----~~~~l~~~d~LG~~~~~L~e 151 (561)
........ +.-.-++...||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 42100000 00001235688888877643
No 319
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=69.20 E-value=16 Score=33.06 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=39.9
Q ss_pred EEEceeecCC-CCCceec---ceeeeeecCCCCccEEEEEEeccCCCCC----ceeEEEEEehhhHh
Q 008558 240 VCKTEVLKNE-TKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNGKH----DLIGKVQKSLADLE 298 (561)
Q Consensus 240 ~~kTevik~t-lnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~~g~~----d~IG~~~i~l~~l~ 298 (561)
+..|....-+ .+|.|++ |.+..+.| ..+..|.|.||..+..... ..||.+.++|=+-.
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~L-Pr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDL-PREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eeeccccccccccceEeeEEEeecChHHC-ChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 4467666655 8999998 44455555 2367899999998876555 69999999986653
No 320
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=69.09 E-value=16 Score=39.48 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=75.7
Q ss_pred eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHH-HHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 008558 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAI-LEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (561)
Q Consensus 350 i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai-~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~ 428 (561)
=.+++-+|=++ |++.- +-+..+|+ .|+.++...= ++.+-+.-|-.. -|-+ .-
T Consensus 273 GpvilllD~SG---------SM~G~-----~e~~AKAvalAl~~~alae--nR~~~~~lF~s~--------~~~~---el 325 (437)
T COG2425 273 GPVILLLDKSG---------SMSGF-----KEQWAKAVALALMRIALAE--NRDCYVILFDSE--------VIEY---EL 325 (437)
T ss_pred CCEEEEEeCCC---------CcCCc-----HHHHHHHHHHHHHHHHHHh--ccceEEEEeccc--------ceee---ee
Confidence 46788899888 55522 22333332 2344443332 244666666442 1111 12
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcc---cCHHHHHHHHHHccC
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV---TDLQETKDALVKASD 505 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i---~d~~~t~~~i~~as~ 505 (561)
.+...+++++++--. .+ |.|-|+|+..|..|++.+++.. --+ .=+++||||.- +|....++.+.++++
T Consensus 326 ~~k~~~~~e~i~fL~----~~-f~GGTD~~~~l~~al~~~k~~~---~~~-adiv~ITDg~~~~~~~~~~~v~e~~k~~~ 396 (437)
T COG2425 326 YEKKIDIEELIEFLS----YV-FGGGTDITKALRSALEDLKSRE---LFK-ADIVVITDGEDERLDDFLRKVKELKKRRN 396 (437)
T ss_pred cCCccCHHHHHHHHh----hh-cCCCCChHHHHHHHHHHhhccc---ccC-CCEEEEeccHhhhhhHHHHHHHHHHHHhh
Confidence 456778888886533 33 5555999999999999988653 222 45789999964 245666777776776
Q ss_pred CCeEEEEE
Q 008558 506 LPLSILII 513 (561)
Q Consensus 506 ~p~siiiv 513 (561)
.=+=-|+|
T Consensus 397 ~rl~aV~I 404 (437)
T COG2425 397 ARLHAVLI 404 (437)
T ss_pred ceEEEEEe
Confidence 55443443
No 321
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=67.08 E-value=72 Score=30.70 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcH
Q 008558 379 RPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFG 458 (561)
Q Consensus 379 ~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~ 458 (561)
+||.++-++..+-..++.|=..+-+--.|+-.. .++...-..+|+||+ +..+++.++.. +....|-
T Consensus 14 ~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~-~~~~a~~ls~lsgn~--------~~h~~~L~~~~-~~~~~G~---- 79 (193)
T PF04056_consen 14 KPTRLQCVLKALEEFVREFFDQNPISQLGIIVM-RDGRAERLSELSGNP--------QEHIEALKKLR-KLEPSGE---- 79 (193)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCChhheeeeee-ecceeEEeeecCCCH--------HHHHHHHHHhc-cCCCCCC----
Confidence 579999999999998888866666777777654 455556677888853 44555555443 3455564
Q ss_pred HHHHHHHHHHHhhcc--ccCCceEEEEEE---eCCcccCHHHHHHHHHHccCCCeEEEEEeecC
Q 008558 459 PVISNAALIAGQSLA--NHGQKYFVLLII---TDGVVTDLQETKDALVKASDLPLSILIIGVGG 517 (561)
Q Consensus 459 ~ii~~~~~~a~~~~~--~~~~~y~vllil---tdg~i~d~~~t~~~i~~as~~p~siiivGvG~ 517 (561)
|-++.+.++|+.... .....=.||+|+ |.-+..|..+|++.+++. +...||| |++.
T Consensus 80 ~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~-~IrvsvI--~laa 140 (193)
T PF04056_consen 80 PSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKKE-NIRVSVI--SLAA 140 (193)
T ss_pred hhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHHc-CCEEEEE--EEhH
Confidence 455556666655432 111233688887 555667889999999976 5555654 5543
No 322
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=65.48 E-value=24 Score=33.09 Aligned_cols=103 Identities=15% Similarity=0.056 Sum_probs=57.3
Q ss_pred cEEEEEE-EEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeec--C--CCCCceeeeEEEEEe---eCceeEEEEE
Q 008558 47 SQIELSF-SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVL--N--SLNPTWITKHIITYQ---FEVVQTLVFR 118 (561)
Q Consensus 47 ~~vel~i-sa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~--n--~lNP~w~e~f~i~~~---fe~~q~L~~~ 118 (561)
..+.++| ++++++.......+|-|+.+.+-.+...-.....|+... + ...+.|++.+.|+.. ......|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4566665 567777666555678888886544221111122443321 1 235779999876543 2344599999
Q ss_pred EEEccCCcccccccccccccceeeeeeEeechh
Q 008558 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 119 VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~e 151 (561)
||+........ +...-.+...||.+.++|=+
T Consensus 88 l~~~~~~~~~~--~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGG--SNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccc--cccccccceEEEEEeEeeEc
Confidence 99976430000 00000145789998888743
No 323
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=65.14 E-value=33 Score=32.55 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=31.5
Q ss_pred ceEEEEEEcCCCceeeEEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEecc
Q 008558 224 PFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFN 279 (561)
Q Consensus 224 Py~~i~~~~~~g~~~~~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d 279 (561)
-|+++.+.. ++.....-+|....-+.+|.||| |.+..+.| .....|-|.||+..
T Consensus 32 l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dL-P~~arLc~ti~~~~ 88 (178)
T cd08399 32 VFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDL-PKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccC-ChhhEEEEEEEEEe
Confidence 466654433 12222222555555567899999 44445544 23567999999974
No 324
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=63.80 E-value=14 Score=40.52 Aligned_cols=156 Identities=18% Similarity=0.253 Sum_probs=99.0
Q ss_pred eeeeEEEEEccccCCCCCCCCCCcc-ccCCCCC-CCHHHHHHHHHhhhcccccCCCCcceeeeccc--CCCCCceeEEeC
Q 008558 348 FELNFMVAVDFTASNGNPRLPDSLH-YLDPSGR-PNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR--PIDGPVSHCFNL 423 (561)
Q Consensus 348 ~qi~~~vaIDfT~SNg~~~~~~slh-~~~~~~~-~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~--~~~~~~~~~f~l 423 (561)
-.+-|++=||.++ |.| +++.+.+ .--.-+|+..++.-++--.. ...+|+|-.+ |+.. .+..-++
T Consensus 445 ~Dla~TLLvD~S~---------St~a~mdetrRvidl~~eaL~~la~~~qa~gd--~~~~~~fts~rr~~vr-i~tvk~F 512 (637)
T COG4548 445 HDLAFTLLVDVSA---------STDAKMDETRRVIDLFHEALLVLAHGHQALGD--SEDILDFTSRRRPWVR-INTVKDF 512 (637)
T ss_pred ccceeEEEeeccc---------chHHHhhhhhhhHHHHHHHHHHhhchhhhhCC--HHHhcCchhhcCccee-eeeeecc
Confidence 3466888899999 666 6775422 35566777777665554321 2445666554 2111 1111110
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCH---------H
Q 008558 424 NGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL---------Q 494 (561)
Q Consensus 424 ~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~---------~ 494 (561)
.- ..-+.+ ...+..+++.--|--...|++|.+.-.. .++.=-.||+||||+.+|. +
T Consensus 513 De-s~~~~~----------~~RImALePg~ytR~G~AIR~As~kL~~----rpq~qklLivlSDGkPnd~d~YEgr~gIe 577 (637)
T COG4548 513 DE-SMGETV----------GPRIMALEPGYYTRDGAAIRHASAKLME----RPQRQKLLIVLSDGKPNDFDHYEGRFGIE 577 (637)
T ss_pred cc-cccccc----------chhheecCccccccccHHHHHHHHHHhc----CcccceEEEEecCCCcccccccccccchh
Confidence 00 000111 1344556666678888899988864322 2455667899999999885 4
Q ss_pred HHHHHHHHccCCCeEEEEEeecCCCchhhhhcccCC
Q 008558 495 ETKDALVKASDLPLSILIIGVGGADFKEMEILDADK 530 (561)
Q Consensus 495 ~t~~~i~~as~~p~siiivGvG~~~f~~m~~ld~d~ 530 (561)
.|.+|+++|-+-.++++-|-|.+..-+....+.+-+
T Consensus 578 DTr~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fgqn 613 (637)
T COG4548 578 DTREAVIEARKSGIEVFNVTLDREAISYLPALFGQN 613 (637)
T ss_pred hHHHHHHHHHhcCceEEEEEecchhhhhhHHHhccC
Confidence 799999999999999999999988777777776555
No 325
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=63.04 E-value=10 Score=43.92 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=59.5
Q ss_pred cceeEeeecCCCcCCCCCCCCceEEEEEEc-CCCceeeEEEceeec-CCCCCceec--ceeeeeecCCCCccEEEEEEec
Q 008558 203 TTELILRCSDLDCKDLFSRNDPFLVISKIV-ESGTHIPVCKTEVLK-NETKPTWKS--VFLNIQQVGSKDSPLIIECFNF 278 (561)
Q Consensus 203 ~v~~~i~a~nL~~~d~~g~sDPy~~i~~~~-~~g~~~~~~kTevik-~tlnP~W~e--f~~~~~~l~d~~~~L~ieV~D~ 278 (561)
+-+.+++|.=|..++.. -|+++-+.+ .....-..|||+++. +.+||+|++ |.|..-.|.+ -..|+|.||+.
T Consensus 705 ~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe-LA~lRiavyeE 779 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE-LASLRIAVYEE 779 (1189)
T ss_pred EEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc-hhheeeeeecc
Confidence 34457788877766543 688886643 112222468888887 559999998 5544333322 35799999885
Q ss_pred cCCCCCceeEEEEEehhhHh
Q 008558 279 NSNGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 279 d~~g~~d~IG~~~i~l~~l~ 298 (561)
. ..+||+=.+++..|.
T Consensus 780 g----gK~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 780 G----GKFIGQRILPVDGLN 795 (1189)
T ss_pred C----Cceeeeeccchhccc
Confidence 3 389999999999995
No 326
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=62.57 E-value=50 Score=32.04 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=79.3
Q ss_pred EEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCC-----CCCceeEEeC
Q 008558 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPI-----DGPVSHCFNL 423 (561)
Q Consensus 352 ~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~---yd~d~~~p~~GfG~~~~-----~~~~~~~f~l 423 (561)
+++.||.+. |+|-..+... .+.+.|+.++-.+++. ..+.-.+-++.||...- .....|.|.+
T Consensus 2 ~vflID~s~---------sM~~~~~~~~-~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l 71 (224)
T PF03731_consen 2 TVFLIDVSP---------SMFEPSSESE-SPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVL 71 (224)
T ss_dssp EEEEEE-SC---------GGGS-BTTCS--HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEE
T ss_pred EEEEEECCH---------HHCCCCCCcc-hhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEe
Confidence 578899998 5664433312 3889999988887653 33345689999998722 2233566665
Q ss_pred CCCCCCCcccCHHHHHHHHHhh---hcceeecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcc-----cCHHH
Q 008558 424 NGSNSYCEVEGIPGIMMAYTSA---LHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-----TDLQE 495 (561)
Q Consensus 424 ~~~~~~~~~~g~~~v~~~Y~~~---~~~~~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i-----~d~~~ 495 (561)
. ....|...-+..+.+.-... ...-.-.....+..+|-.+..+-++.....+...--++++||++- .+++.
T Consensus 72 ~-~l~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~ 150 (224)
T PF03731_consen 72 Q-PLDPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELER 150 (224)
T ss_dssp E-ECC--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHH
T ss_pred e-cCCccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHH
Confidence 4 22334333333322211110 000111334677888888877655421223333456788998753 23555
Q ss_pred HHHH--HHHccCCCeEEEEEeecCCC
Q 008558 496 TKDA--LVKASDLPLSILIIGVGGAD 519 (561)
Q Consensus 496 t~~~--i~~as~~p~siiivGvG~~~ 519 (561)
+++. ..+....-+.+..+.+...+
T Consensus 151 ~~~~l~~~Dl~~~~i~~~~~~l~~~~ 176 (224)
T PF03731_consen 151 IIQKLKAKDLQDNGIEIELFFLPGSD 176 (224)
T ss_dssp HHHHHHHHHHHHHTEEEEEEECT-TT
T ss_pred HHHhhccccchhcCcceeEeecCCCC
Confidence 5555 45566677888888884333
No 327
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=59.50 E-value=22 Score=39.87 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=80.5
Q ss_pred cceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHH-HHHHHHhhhcccccCCCCcceeeecccCCCCCcee-EEeC
Q 008558 346 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQ-RAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSH-CFNL 423 (561)
Q Consensus 346 gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~-~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~-~f~l 423 (561)
..-..-+.+=||.++| +. . ++-..- .+.-.+.+.|+.=. =.+-+|||-...+++..+. -+--
T Consensus 389 ~~~D~~V~LLID~SGS---------M~----~-r~~~vA~~~a~iLa~aL~~~g--Ip~eVlGFtt~aw~gg~~re~w~~ 452 (600)
T TIGR01651 389 EFRDTVVTLLIDNSGS---------MR----G-RPITVAATCADILARTLERCG--VKVEILGFTTRAWKGGQSREKWLK 452 (600)
T ss_pred CCCCcEEEEEEECCcc---------CC----C-CHHHHHHHHHHHHHHHHHHCC--CCeEEEeecccccccccchHHHHh
Confidence 3344557778899995 32 1 222222 24556777777443 3355899976533332211 1111
Q ss_pred CCCCCCCcc-cCHHHHHHHHHhhhcceeecCCCCcHHHHH----------HHHHHHHhhccccCCceEEEEEEeCCcccC
Q 008558 424 NGSNSYCEV-EGIPGIMMAYTSALHNVNLAGPTLFGPVIS----------NAALIAGQSLANHGQKYFVLLIITDGVVTD 492 (561)
Q Consensus 424 ~~~~~~~~~-~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~----------~~~~~a~~~~~~~~~~y~vlliltdg~i~d 492 (561)
.|.+..|-= +-+.-++ |+.+-..+.=. ..+..-+++ .|+.+|.+...+....=-||++|+||...|
T Consensus 453 ~g~p~~PgRlN~l~hii--yk~ad~~wr~~-r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D 529 (600)
T TIGR01651 453 AGKPAAPGRLNDLRHII--YKSADAPWRRA-RRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVD 529 (600)
T ss_pred cCCCCCCcccchhhhhh--hhccccchhhh-ccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCC
Confidence 232323311 1122233 66553332211 123333442 566666665555567778999999999876
Q ss_pred -----------HHH-HHHHHHHccCC-CeEEEEEeecCC
Q 008558 493 -----------LQE-TKDALVKASDL-PLSILIIGVGGA 518 (561)
Q Consensus 493 -----------~~~-t~~~i~~as~~-p~siiivGvG~~ 518 (561)
+++ ..+.|.....- |+-++=||||..
T Consensus 530 ~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 530 DSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred ccccccCchhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 222 23333333343 899999999876
No 328
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=56.29 E-value=35 Score=28.79 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=47.2
Q ss_pred CCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeeee
Q 008558 65 SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGE 144 (561)
Q Consensus 65 sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~ 144 (561)
|-++-.+++.+.+ +.+++|.-..- .+..|++.|.++. +....|.+.||=.|-. .+-|.
T Consensus 7 ~~~eV~avLklDn-----~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD~R--------------slCav 64 (98)
T cd08687 7 GCSEVSAVLKLDN-----TVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRDWR--------------SLCAV 64 (98)
T ss_pred cccceEEEEEEcC-----eEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEecch--------------hhhhh
Confidence 3377888888865 26888876543 6789999987665 5667999999977743 24566
Q ss_pred eEeechhh
Q 008558 145 ATCTLSQI 152 (561)
Q Consensus 145 ~~~~L~el 152 (561)
..+.|++.
T Consensus 65 ~~lrLEd~ 72 (98)
T cd08687 65 KFLKLEDE 72 (98)
T ss_pred eeeEhhhh
Confidence 66677763
No 329
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=56.08 E-value=90 Score=28.40 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=58.0
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEeeC------------ceeEEE
Q 008558 49 IELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE------------VVQTLV 116 (561)
Q Consensus 49 vel~isa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~fe------------~~q~L~ 116 (561)
+||.|.|--=|..=+..+-|-|..|++.+ ...||+...-..==.|+++|.|+-.|. +.+.++
T Consensus 2 veL~i~aVTCPGv~L~~~~~vyL~v~~lg------~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~ 75 (140)
T PF14909_consen 2 VELEIHAVTCPGVWLCDKGDVYLSVCILG------QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVY 75 (140)
T ss_pred eEEEEEEEecCCeEeCCCCCEEEEEEEcc------cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEE
Confidence 56664443333333445678999999876 588998877666666778887764443 234788
Q ss_pred EEEEEccCCcccccccccccccceeeeeeEeechhhh
Q 008558 117 FRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIV 153 (561)
Q Consensus 117 ~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~ 153 (561)
++++.+... ....|+..+-++.+.+
T Consensus 76 iELiQl~~~------------~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 76 IELIQLVPP------------AGEILAYYEENTRDFL 100 (140)
T ss_pred EEEEEEeCC------------CCcEEEEEeccccceE
Confidence 999887754 2567777777766654
No 330
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=55.90 E-value=28 Score=32.96 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=33.1
Q ss_pred eeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCCC---ceeEEEEEehhh
Q 008558 237 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH---DLIGKVQKSLAD 296 (561)
Q Consensus 237 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~~---d~IG~~~i~l~~ 296 (561)
....+.|.+...+.+|.|++ |++.+..--.....|.|++++.....+. ..+|.+.++|-+
T Consensus 57 ~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 57 FVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred cceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 34568888888999999997 6554422222356799999986643322 699999999987
No 331
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=53.90 E-value=38 Score=31.77 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred eeEeeecCCCcCCCCCCCCceEEEEEEcCCCcee-eEEEceeec--C--CCCCceec---ceeeeeecCCCCccEEEEEE
Q 008558 205 ELILRCSDLDCKDLFSRNDPFLVISKIVESGTHI-PVCKTEVLK--N--ETKPTWKS---VFLNIQQVGSKDSPLIIECF 276 (561)
Q Consensus 205 ~~~i~a~nL~~~d~~g~sDPy~~i~~~~~~g~~~-~~~kTevik--~--tlnP~W~e---f~~~~~~l~d~~~~L~ieV~ 276 (561)
+.+.++.+++.......+|-|+.+.+.. +++.+ ....|+... + ...+.|++ |.+....| ..+..|.|.+|
T Consensus 12 i~v~~~h~~~~~~~~~~~~~~v~~~l~~-g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~itl~ 89 (171)
T cd04012 12 VTVSSLHRIPPTWVQSFEDFYLSCSLYH-GGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLVLTLY 89 (171)
T ss_pred EEEEEeecCChHHhhccccEEEEEEEEE-CCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEEEEEE
Confidence 3455666666543323456677775544 12222 122343221 1 23577998 44445545 33667999999
Q ss_pred eccCCC---------CCceeEEEEEehhhH
Q 008558 277 NFNSNG---------KHDLIGKVQKSLADL 297 (561)
Q Consensus 277 D~d~~g---------~~d~IG~~~i~l~~l 297 (561)
+....+ .+..||.+.++|=+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 90 GTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEecCCccccccccccceEEEEEeEeeEcc
Confidence 987654 457899888887554
No 332
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=49.83 E-value=45 Score=40.40 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCc-----
Q 008558 383 YQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLF----- 457 (561)
Q Consensus 383 y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f----- 457 (561)
+-.|+.+++.-|+ +|+|||-.. .+-....|+.+-..|-+.+++||+.||-.+
T Consensus 2135 ~tt~l~~la~rle-------~PaYglQ~T----------------~~vP~dSies~A~~yirqirkvQP~GPYrl~GYSy 2191 (2376)
T KOG1202|consen 2135 FTTALESLASRLE-------IPAYGLQCT----------------EAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSY 2191 (2376)
T ss_pred chHHHHHHHhhcC-------Ccchhhhcc----------------ccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccch
Confidence 3455555555554 899988664 122345688999999999999999999744
Q ss_pred HHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHc
Q 008558 458 GPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKA 503 (561)
Q Consensus 458 ~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~a 503 (561)
.-.|.+.+.-+-+. ++.-.-||+-||..+-+..-.+.-..+
T Consensus 2192 G~~l~f~ma~~Lqe-----~~~~~~lillDGspty~~~Y~~~yr~~ 2232 (2376)
T KOG1202|consen 2192 GACLAFEMASQLQE-----QQSPAPLILLDGSPTYVLAYTQSYRAK 2232 (2376)
T ss_pred hHHHHHHHHHHHHh-----hcCCCcEEEecCchHHHHHHHHHHHHH
Confidence 44454444333222 222233999999987776655554443
No 333
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=48.75 E-value=69 Score=30.65 Aligned_cols=83 Identities=25% Similarity=0.267 Sum_probs=52.8
Q ss_pred cceeecCCCCcHHHHHHHHHHHHhhcc---c-cCCceE-EEEEEeCCcccCHHHHHHHHHHcc-CCCeEEEEEeec--CC
Q 008558 447 HNVNLAGPTLFGPVISNAALIAGQSLA---N-HGQKYF-VLLIITDGVVTDLQETKDALVKAS-DLPLSILIIGVG--GA 518 (561)
Q Consensus 447 ~~~~~~gpt~f~~ii~~~~~~a~~~~~---~-~~~~y~-vlliltdg~i~d~~~t~~~i~~as-~~p~siiivGvG--~~ 518 (561)
+.+.-.|-|-...-|+.+.++.++.++ . ...-|- +..+||||+.+|-=.--.++..-- .---|++..++| .+
T Consensus 71 p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~a 150 (207)
T COG4245 71 PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQGA 150 (207)
T ss_pred CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEeccccc
Confidence 556667999999999999998876632 1 233332 456789999977533333343322 233566666655 46
Q ss_pred CchhhhhcccC
Q 008558 519 DFKEMEILDAD 529 (561)
Q Consensus 519 ~f~~m~~ld~d 529 (561)
|-.-++++-+.
T Consensus 151 d~~~L~qit~~ 161 (207)
T COG4245 151 DNKTLNQITEK 161 (207)
T ss_pred ccHHHHHHHHh
Confidence 87777777643
No 334
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=46.50 E-value=1.5e+02 Score=27.64 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCCcEEEEEEEcCCCcee-----e-EeeeeeecCC-----CCCceeeeEEEEEeeCce---eEEEEEEEEccCCccccc
Q 008558 65 SKSDPMLVVYMKARDGALV-----E-VGRTEVVLNS-----LNPTWITKHIITYQFEVV---QTLVFRIYDVDTQFHNVD 130 (561)
Q Consensus 65 sksDPyv~v~~~~~~~~~~-----~-~~rTevi~n~-----lNP~w~e~f~i~~~fe~~---q~L~~~VyD~D~~~~~~~ 130 (561)
..++-||+-++.-+ ..|+ . .++|.+.+.+ -.=.|+-.|.+.+.-... ..|.|+||..|..
T Consensus 15 ~~~~l~~~y~~~~g-~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~----- 88 (168)
T PF07162_consen 15 EEDNLYCRYQLVHG-PDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSW----- 88 (168)
T ss_pred CCCCEEEEEEEEeC-CCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEccc-----
Confidence 34567898887652 2454 3 6888887543 345688887776655443 3899999999976
Q ss_pred ccccccccceeeeeeEeechh
Q 008558 131 VKTLKLVEQQFLGEATCTLSQ 151 (561)
Q Consensus 131 ~~~~~l~~~d~LG~~~~~L~e 151 (561)
+++.+.|...+.|-.
T Consensus 89 ------gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 89 ------GRDRVEGYGFCHLPT 103 (168)
T ss_pred ------CCeEEeEEeEEEeCC
Confidence 788999988777643
No 335
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=45.13 E-value=1.1e+02 Score=25.80 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=42.1
Q ss_pred EEcCCCCCCCCCCCCcEEEEEEEcCCCceeeEeeeeeecCCCCCceeeeEEEEEee---CceeEEEEEEEEccC
Q 008558 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDT 124 (561)
Q Consensus 54 sa~~L~~~D~~sksDPyv~v~~~~~~~~~~~~~rTevi~n~lNP~w~e~f~i~~~f---e~~q~L~~~VyD~D~ 124 (561)
..+++.-....+.+|-||.+.+-.++........|..+.-...+.|+|.+.|+... .....|.|.||+...
T Consensus 19 ~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 19 LIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred EeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 34444433333336788888654422211223356666656669999998765332 344589999999654
No 336
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=39.79 E-value=3.1e+02 Score=25.44 Aligned_cols=75 Identities=9% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCCCceEEEEEEcCCCceeeEEEceeecCCCCCceec-ceeee--eec---------CCCCccEEEEEEeccCCCCCcee
Q 008558 220 SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI--QQV---------GSKDSPLIIECFNFNSNGKHDLI 287 (561)
Q Consensus 220 g~sDPy~~i~~~~~~g~~~~~~kTevik~tlnP~W~e-f~~~~--~~l---------~d~~~~L~ieV~D~d~~g~~d~I 287 (561)
+..+..+.++..- + .+.|+|..+.-+.+|.+++ |.+.+ +.. -....+|.+-|.--|..+...++
T Consensus 30 ~~~~s~~~l~l~f--~--~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv 105 (156)
T PF15627_consen 30 GQVCSTFTLHLHF--R--GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLV 105 (156)
T ss_pred CCCceEEEEEEEe--c--CceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEee
Confidence 4555666676654 2 2689999999999999998 54443 221 12467888988888887777999
Q ss_pred EEEEEehhhHh
Q 008558 288 GKVQKSLADLE 298 (561)
Q Consensus 288 G~~~i~l~~l~ 298 (561)
|+..+.-..+.
T Consensus 106 ~s~~ldWR~vL 116 (156)
T PF15627_consen 106 GSHFLDWRKVL 116 (156)
T ss_pred eeceehHHHHh
Confidence 99999999885
No 337
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=35.59 E-value=1.1e+02 Score=29.91 Aligned_cols=124 Identities=11% Similarity=0.230 Sum_probs=80.8
Q ss_pred CHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHH
Q 008558 381 NAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPV 460 (561)
Q Consensus 381 n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~i 460 (561)
|+|++++.+|-..+-+-..|...-+.|=|+..+ .| ....=++-++..|+- ..|.+ +-+.=-|-
T Consensus 118 ~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~------s~--------~~YacLd~~~~~~~f--~~v~v-~~ve~yP~ 180 (265)
T COG4822 118 NDYEICVEAIKDQIPPLNKDEILVLMGHGTDHH------SN--------AAYACLDHVLDEYGF--DNVFV-AAVEGYPL 180 (265)
T ss_pred hhHHHHHHHHHHhcCCcCcCeEEEEEecCCCcc------HH--------HHHHHHHHHHHhcCC--CceEE-EEecCCCc
Confidence 999999999999998888888888888887611 11 111123444444432 11111 11222455
Q ss_pred HHHHHHHHHhhccccCCceEEEEEEeCC--cccCHH----HHHHHHHHccCCCeEEEEEeecCC-Cchhh
Q 008558 461 ISNAALIAGQSLANHGQKYFVLLIITDG--VVTDLQ----ETKDALVKASDLPLSILIIGVGGA-DFKEM 523 (561)
Q Consensus 461 i~~~~~~a~~~~~~~~~~y~vlliltdg--~i~d~~----~t~~~i~~as~~p~siiivGvG~~-~f~~m 523 (561)
+..++++-++..- ..--.+=|.++-| .+.||. ++-..|.++...+.-...=|+|.. +|..|
T Consensus 181 ~d~vi~~l~~~~~--~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~i 248 (265)
T COG4822 181 VDTVIEYLRKNGI--KEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAI 248 (265)
T ss_pred HHHHHHHHHHcCC--ceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHH
Confidence 6666666555431 2223344566666 478998 999999999999999999999965 67766
No 338
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=35.59 E-value=2.4e+02 Score=24.41 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=32.1
Q ss_pred eEeeeeeecCCCCCceeeeEEEEEeeC-------ceeEEEEEEEEccCCcccccccccccccceeeeeeEeechhhhccC
Q 008558 84 EVGRTEVVLNSLNPTWITKHIITYQFE-------VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (561)
Q Consensus 84 ~~~rTevi~n~lNP~w~e~f~i~~~fe-------~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG~~~~~L~el~~~~ 156 (561)
|...|-++. .++|.++-+-.+.+.-+ ....++++++..-. .+...+|.+.+++.+++...
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g------------~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG------------SDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S------------S-EEEEEEEEE--SHHHH--
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc------------CCeEEEEEEEeechhhhcCC
Confidence 456777776 89999987765544322 23489999998664 35789999999999999666
Q ss_pred C
Q 008558 157 N 157 (561)
Q Consensus 157 ~ 157 (561)
+
T Consensus 78 ~ 78 (107)
T PF11618_consen 78 G 78 (107)
T ss_dssp S
T ss_pred C
Confidence 5
No 339
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=34.89 E-value=2e+02 Score=26.87 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCCcEEEEEEEcCCCceeeEeeeeeecC--CCCCceeeeEEEEEeeCceeEEEEEEEEccCCcccccccccccccceeee
Q 008558 66 KSDPMLVVYMKARDGALVEVGRTEVVLN--SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLG 143 (561)
Q Consensus 66 ksDPyv~v~~~~~~~~~~~~~rTevi~n--~lNP~w~e~f~i~~~fe~~q~L~~~VyD~D~~~~~~~~~~~~l~~~d~LG 143 (561)
+.--|++|++.+ +++.+|+...- +.-=.|++.|.+... ...+.|.++||.... ..+..|+
T Consensus 36 ~~~~~ikl~~N~-----k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~------------~~~~~la 97 (168)
T PF15625_consen 36 KTRYYIKLFFND-----KEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG------------LSDRLLA 97 (168)
T ss_pred heeEEEEEEECC-----EEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC------------ccceEEE
Confidence 344688888854 27888886543 223344455555543 466799999999764 2577999
Q ss_pred eeEeechhh
Q 008558 144 EATCTLSQI 152 (561)
Q Consensus 144 ~~~~~L~el 152 (561)
++.+++-..
T Consensus 98 ~v~vpvP~~ 106 (168)
T PF15625_consen 98 EVFVPVPGS 106 (168)
T ss_pred EEEeeCCCC
Confidence 998887543
No 340
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=33.52 E-value=1.8e+02 Score=30.14 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=84.7
Q ss_pred cccceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc-ccccCCCCcceeeecccCCCCCceeEEe
Q 008558 344 LAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL-QVYDSDKRFPAWGFGARPIDGPVSHCFN 422 (561)
Q Consensus 344 i~gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il-~~yd~d~~~p~~GfG~~~~~~~~~~~f~ 422 (561)
++-|.-=.|.+-||++.. +--.+ . ++|...-.|..+-..+ +.||. +-+.-.||=.. .++...-|=-
T Consensus 55 ~r~GiiRhl~iviD~S~a---------m~e~D-f-~P~r~a~~~K~le~Fv~eFFdQ-NPiSQigii~~-k~g~A~~lt~ 121 (378)
T KOG2807|consen 55 IRKGIIRHLYIVIDCSRA---------MEEKD-F-RPSRFANVIKYLEGFVPEFFDQ-NPISQIGIISI-KDGKADRLTD 121 (378)
T ss_pred hhhhhheeEEEEEEhhhh---------hhhcc-C-CchHHHHHHHHHHHHHHHHhcc-CchhheeEEEE-ecchhhHHHH
Confidence 445666678899999873 32222 1 4677787787777744 55554 44666666332 4444444556
Q ss_pred CCCCCCCCcccCHHHHHHHHHhhhccee-ecCCCCcHHHHHHHHHHHHhhccc--cCCceEEEEEEeC---CcccCHHHH
Q 008558 423 LNGSNSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLAN--HGQKYFVLLIITD---GVVTDLQET 496 (561)
Q Consensus 423 l~~~~~~~~~~g~~~v~~~Y~~~~~~~~-~~gpt~f~~ii~~~~~~a~~~~~~--~~~~y~vlliltd---g~i~d~~~t 496 (561)
|.|| |+.. .++|+.+. -+| .+-++.|.++|.+.... ..-.-.||+|+.- -+..|.-+|
T Consensus 122 ltgn---p~~h---------I~aL~~~~~~~g----~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~t 185 (378)
T KOG2807|consen 122 LTGN---PRIH---------IHALKGLTECSG----DFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYET 185 (378)
T ss_pred hcCC---HHHH---------HHHHhcccccCC----ChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHH
Confidence 6774 3332 45555544 233 24577888888876422 1223468888653 566788999
Q ss_pred HHHHHHccCCCeEEEEEeec
Q 008558 497 KDALVKASDLPLSILIIGVG 516 (561)
Q Consensus 497 ~~~i~~as~~p~siiivGvG 516 (561)
|+.++++ ++-.| +||+.
T Consensus 186 I~~lk~~-kIRvs--vIgLs 202 (378)
T KOG2807|consen 186 IDKLKAY-KIRVS--VIGLS 202 (378)
T ss_pred HHHHHhh-CeEEE--EEeec
Confidence 9999955 55555 45653
No 341
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=33.22 E-value=91 Score=29.92 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=36.7
Q ss_pred eeEEEceeecCCCCCceec-ce--eeeeecCCCCccEEEEEEeccCC--CCCceeEEEEEeh
Q 008558 238 IPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSN--GKHDLIGKVQKSL 294 (561)
Q Consensus 238 ~~~~kTevik~tlnP~W~e-f~--~~~~~l~d~~~~L~ieV~D~d~~--g~~d~IG~~~i~l 294 (561)
...|+|-+..-+.+|.|+| ++ ++.+.. ....|.|+++..... .....+|-..++|
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4568999999899999998 54 444433 245788877664322 1226678777776
No 342
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=33.03 E-value=2.3e+02 Score=27.53 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.1
Q ss_pred cceeecC--CCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEEEEEeecCCCchhhh
Q 008558 447 HNVNLAG--PTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEME 524 (561)
Q Consensus 447 ~~~~~~g--pt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~siiivGvG~~~f~~m~ 524 (561)
..|.|+| |+.-.+.+..+++.+++. . . -+.|.|.|-...+.+..+.+.+. +..|.|++-..+-+.-+
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~-----g-~-~~~i~TNG~~~~~~~~~~~ll~~----~d~v~isl~~~~~~~~~ 135 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKEL-----G-I-HTCLDTSGFLGGCTEAADELLEY----TDLVLLDIKHFNPEKYK 135 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHC-----C-C-CEEEEcCCCCCccHHHHHHHHHh----CCEEEEeCCCCCHHHHH
Confidence 3588886 888888888888887753 1 2 24577999655445566666653 24577776544433333
Q ss_pred hc
Q 008558 525 IL 526 (561)
Q Consensus 525 ~l 526 (561)
++
T Consensus 136 ~~ 137 (235)
T TIGR02493 136 KL 137 (235)
T ss_pred HH
Confidence 33
No 343
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=32.86 E-value=1.2e+02 Score=28.60 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=37.6
Q ss_pred eEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCC-----CCCceeEEEEEehhh
Q 008558 239 PVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN-----GKHDLIGKVQKSLAD 296 (561)
Q Consensus 239 ~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~-----g~~d~IG~~~i~l~~ 296 (561)
..|+|-+..+ .+|.|++ |++.+-.--.....|.|++++.... .....+|.+.++|-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3566655555 8999997 6544421112356799999986632 346789988888865
No 344
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=32.77 E-value=2e+02 Score=27.54 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=38.8
Q ss_pred eeeEEEceeecCCCCCceec-cee--eeeecCCCCccEEEEEEeccC--C-------CCCceeEEEEEehhh
Q 008558 237 HIPVCKTEVLKNETKPTWKS-VFL--NIQQVGSKDSPLIIECFNFNS--N-------GKHDLIGKVQKSLAD 296 (561)
Q Consensus 237 ~~~~~kTevik~tlnP~W~e-f~~--~~~~l~d~~~~L~ieV~D~d~--~-------g~~d~IG~~~i~l~~ 296 (561)
....+.|.|...+.+|.|.+ +++ |.+. ...--|.|+.|+..- . +....+|...++|-+
T Consensus 54 ~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l--~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 54 FTTSAYAAVLHHNQNPEFYDEIKIELPTQL--HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred cceEEEEEEEEcCCCCccceeEEEecCCcC--CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45578899999999999997 554 4432 224579999988651 1 123567777777644
No 345
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=32.27 E-value=1.5e+02 Score=25.00 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=32.7
Q ss_pred CCceEEEEEEcCCCceee-EEEceeecCCCCCceec---ceeeeeecCCCCccEEEEEEeccC
Q 008558 222 NDPFLVISKIVESGTHIP-VCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNS 280 (561)
Q Consensus 222 sDPy~~i~~~~~~g~~~~-~~kTevik~tlnP~W~e---f~~~~~~l~d~~~~L~ieV~D~d~ 280 (561)
++-|+.+.+.. +++.+. ...|..+.-...+.|+| |.+..+.| ..+..|.|.+|+...
T Consensus 32 ~~l~v~~~l~~-g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~L-Pr~a~L~~~i~~~~~ 92 (100)
T smart00142 32 SDLYVEIQLYH-GGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDL-PREARLCITIYEVKN 92 (100)
T ss_pred ceEEEEEEEEE-CCEEccCcEEecccCCCCCcccceeEEccCchhcC-ChhhEEEEEEEEeeC
Confidence 46777775544 233221 22454444445689998 33444444 235678999998653
No 346
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.68 E-value=2.1e+02 Score=29.50 Aligned_cols=91 Identities=23% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCcccCHHHHHHHHHhhhcceeec-CCCCc-----HHHHHHHHHHHHhhccccCCceEEEEEEeCCc-ccCH-----HHH
Q 008558 429 YCEVEGIPGIMMAYTSALHNVNLA-GPTLF-----GPVISNAALIAGQSLANHGQKYFVLLIITDGV-VTDL-----QET 496 (561)
Q Consensus 429 ~~~~~g~~~v~~~Y~~~~~~~~~~-gpt~f-----~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~-i~d~-----~~t 496 (561)
.|.=.|+.+++..-++-.+.+.+. -|+.+ ++-|-.|++.+.+.. ....|-|++|.=-|. +.|+ ++.
T Consensus 22 s~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~--~~~~~Dviii~RGGGs~eDL~~FN~e~v 99 (319)
T PF02601_consen 22 SPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMG--QADDFDVIIIIRGGGSIEDLWAFNDEEV 99 (319)
T ss_pred CCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcc--ccccccEEEEecCCCChHHhcccChHHH
Confidence 455567888888888877765553 34443 344555555554321 123566666655543 4554 666
Q ss_pred HHHHHHccCCCeEEEEEeecCC-Cchhhhh
Q 008558 497 KDALVKASDLPLSILIIGVGGA-DFKEMEI 525 (561)
Q Consensus 497 ~~~i~~as~~p~siiivGvG~~-~f~~m~~ 525 (561)
.++|. +|.+| ||.|||-+ ||.-...
T Consensus 100 arai~-~~~~P---visaIGHe~D~ti~D~ 125 (319)
T PF02601_consen 100 ARAIA-ASPIP---VISAIGHETDFTIADF 125 (319)
T ss_pred HHHHH-hCCCC---EEEecCCCCCchHHHH
Confidence 77766 56788 89999965 8765443
No 347
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=31.26 E-value=2.5e+02 Score=26.73 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=37.8
Q ss_pred eeeEEEceeecCCCCCceec-ceeeeeecCCCCccEEEEEEeccCCCC------CceeEEEEEehh
Q 008558 237 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK------HDLIGKVQKSLA 295 (561)
Q Consensus 237 ~~~~~kTevik~tlnP~W~e-f~~~~~~l~d~~~~L~ieV~D~d~~g~------~d~IG~~~i~l~ 295 (561)
....+.|.|...+.+|.|.+ +++.+-.--...--|.|++++.+-..+ ...+|...++|-
T Consensus 52 ~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 52 FLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred cceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 34578899999999999997 654332111224578999988543221 255777666653
No 348
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=29.33 E-value=1.6e+02 Score=28.46 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=37.0
Q ss_pred eeeEEEceeecCCCCCceec-ce--eeeeecCCCCccEEEEEEeccCC-C---CCceeEEEEEeh
Q 008558 237 HIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSN-G---KHDLIGKVQKSL 294 (561)
Q Consensus 237 ~~~~~kTevik~tlnP~W~e-f~--~~~~~l~d~~~~L~ieV~D~d~~-g---~~d~IG~~~i~l 294 (561)
....|+|-+..-+.+|.|+| ++ ++.+.. ....|.|+++..... . ....+|-..++|
T Consensus 51 ~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 51 PIDEYKSVIYYQVDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred cceeEEEEEEeecCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 35578888888889999998 54 444433 256788888764321 1 225677777766
No 349
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=28.28 E-value=1.1e+02 Score=26.50 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=23.1
Q ss_pred CccEEEEEEeccC---CCCCceeEEEEEehhhHh
Q 008558 268 DSPLIIECFNFNS---NGKHDLIGKVQKSLADLE 298 (561)
Q Consensus 268 ~~~L~ieV~D~d~---~g~~d~IG~~~i~l~~l~ 298 (561)
..+|++.+|+... .....+||.+.+++.++.
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~ 61 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAF 61 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHH
Confidence 4678887765432 356689999999998875
No 350
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=27.27 E-value=24 Score=17.79 Aligned_cols=9 Identities=56% Similarity=1.114 Sum_probs=5.8
Q ss_pred CCcceeeec
Q 008558 401 KRFPAWGFG 409 (561)
Q Consensus 401 ~~~p~~GfG 409 (561)
|+.+.|.||
T Consensus 1 KR~~~Y~FG 9 (11)
T PF05953_consen 1 KRSPMYSFG 9 (11)
T ss_pred CCCCccccC
Confidence 345667777
No 351
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=25.11 E-value=1.3e+02 Score=32.05 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhccccCCceEEEEEEeCCccc-------CHHHHHHHHHHccCCCeEEEEEeecCC--Cchhhh
Q 008558 460 VISNAALIAGQSLANHGQKYFVLLIITDGVVT-------DLQETKDALVKASDLPLSILIIGVGGA--DFKEME 524 (561)
Q Consensus 460 ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~-------d~~~t~~~i~~as~~p~siiivGvG~~--~f~~m~ 524 (561)
|+..-+++|+... ..-.-=.|.|-++-|+.. ...++++.+.+|+++|| ||.|-|+. |.+.|+
T Consensus 137 V~~dP~~wak~~V-~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPL--IL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 137 VMEDPAEWARKCV-KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPI--VIGGSGNPEKDPLVLE 207 (389)
T ss_pred HhcCHHHHHHHHH-HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCE--EEeCCCCCcCCHHHHH
Confidence 3333336666553 222334678888877776 67889999999999999 77888865 666663
No 352
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=23.26 E-value=91 Score=33.06 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=61.9
Q ss_pred eeccccceeeeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCC---c
Q 008558 341 LDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGP---V 417 (561)
Q Consensus 341 ldyi~gG~qi~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~~p~~GfG~~~~~~~---~ 417 (561)
--|-+|||.--=-..|=.|+-| ..-|||=+.+ .+|. +.+ .|+-.-+|-.||. +... .
T Consensus 228 h~y~~GGcRh~sYtcIc~sG~n-----s~vLHYgha~-apNd---------~~i----qdgd~cLfDmGae-y~~yaSDI 287 (492)
T KOG2737|consen 228 HSYSYGGCRHLSYTCICASGDN-----SAVLHYGHAG-APND---------RTI----QDGDLCLFDMGAE-YHFYASDI 287 (492)
T ss_pred hhhccCCccccccceeeecCCC-----cceeeccccC-CCCC---------ccc----CCCCEEEEecCcc-eeeeeccc
Confidence 3578899873322233334433 3579997755 5664 222 3556778889998 4433 3
Q ss_pred eeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeec
Q 008558 418 SHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLA 452 (561)
Q Consensus 418 ~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~ 452 (561)
--|||.||-.+...-.=++.||++-+..+..+++.
T Consensus 288 TcsFP~nGKFTadqk~VYnaVLda~navm~a~KpG 322 (492)
T KOG2737|consen 288 TCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPG 322 (492)
T ss_pred ceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 45899999887776666788999988888888874
No 353
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=22.60 E-value=1.1e+02 Score=26.42 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=28.7
Q ss_pred EEEceeecCCCCCceec---ceeeeeec---CCCCccEEEEEEeccCCCCCceeEEEEEehhhHhh
Q 008558 240 VCKTEVLKNETKPTWKS---VFLNIQQV---GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 240 ~~kTevik~tlnP~W~e---f~~~~~~l---~d~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~ 299 (561)
.+.|.++. ..+|.++- |.+..+.+ .-....+.+|++.-- ......+|.+++++.++.+
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLE 75 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhc
Confidence 34565655 78999983 34444333 112568999998765 3446999999999999964
No 354
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.98 E-value=4.8e+02 Score=32.01 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=113.2
Q ss_pred cccEEEeEeeeeeeeeeeecccccee-eeEEEEEccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCC
Q 008558 324 NSQLFVDKFSESVQYTFLDYLAGGFE-LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKR 402 (561)
Q Consensus 324 ~G~i~l~~~~~~~~~sFldyi~gG~q-i~~~vaIDfT~SNg~~~~~~slh~~~~~~~~n~y~~ai~~i~~il~~yd~d~~ 402 (561)
...+.+-.|...+. ||.+-+. -.+.|=+|-++| | . .-.+.-|-..+.+||+-.-.+-.
T Consensus 204 ~~~idl~D~R~r~W-----yi~aAt~pKdiviLlD~SgS---------m---~----g~~~~lak~tv~~iLdtLs~~Df 262 (1104)
T KOG2353|consen 204 DNSIDLYDCRNRSW-----YIQAATSPKDIVILLDVSGS---------M---S----GLRLDLAKQTVNEILDTLSDNDF 262 (1104)
T ss_pred CCcceeeecccccc-----cccccCCccceEEEEecccc---------c---c----chhhHHHHHHHHHHHHhcccCCe
Confidence 45566666665554 7766655 566777798874 2 1 13445555666666666666666
Q ss_pred cceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCcHHHHHHHHHHHHhhcc-----ccCC
Q 008558 403 FPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-----NHGQ 477 (561)
Q Consensus 403 ~p~~GfG~~~~~~~~~~~f~l~~~~~~~~~~g~~~v~~~Y~~~~~~~~~~gpt~f~~ii~~~~~~a~~~~~-----~~~~ 477 (561)
|-..-|+-. -..++-|| .++-+++--.-.+..++.+..+++.|-+++.-.++.|-+.=..... +...
T Consensus 263 vni~tf~~~--~~~v~pc~------~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~ 334 (1104)
T KOG2353|consen 263 VNILTFNSE--VNPVSPCF------NGTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSP 334 (1104)
T ss_pred EEEEeeccc--cCcccccc------cCceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccc
Confidence 777777654 22344563 3567777777788889999999999999999999988876553321 2334
Q ss_pred ceEEEEEEeCCcccCHHHHHHHHHHcc-CCCeEEEEEeecCCCchhh
Q 008558 478 KYFVLLIITDGVVTDLQETKDALVKAS-DLPLSILIIGVGGADFKEM 523 (561)
Q Consensus 478 ~y~vlliltdg~i~d~~~t~~~i~~as-~~p~siiivGvG~~~f~~m 523 (561)
=+.+.+++|||...+..+..+.--.-. ..-++=.-||-+..+|...
T Consensus 335 C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~~~~~~~~~ 381 (1104)
T KOG2353|consen 335 CNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEI 381 (1104)
T ss_pred cceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecccccccccc
Confidence 689999999999988888887766531 2333334455555566554
No 355
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=21.48 E-value=5.6e+02 Score=22.50 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=35.0
Q ss_pred CCCCCceec-ceeeeeec----CC--CCccEEEEEEeccCCCCCceeEEEEEehhhHhh
Q 008558 248 NETKPTWKS-VFLNIQQV----GS--KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (561)
Q Consensus 248 ~tlnP~W~e-f~~~~~~l----~d--~~~~L~ieV~D~d~~g~~d~IG~~~i~l~~l~~ 299 (561)
.+-.-.|++ |.++.... +. ....++|.|+.....++...+|.+.++|.++..
T Consensus 48 ~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 48 KNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred cccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 445667996 55444332 11 245688999887544444699999999999964
No 356
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.04 E-value=2.6e+02 Score=27.70 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=37.5
Q ss_pred ecCCCCcHHHHHHHHHHHHhhccccCCceEEEEEEeCCcccCHHHHHHHHHHccCCCeEEEEEe
Q 008558 451 LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIG 514 (561)
Q Consensus 451 ~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdg~i~d~~~t~~~i~~as~~p~siiivG 514 (561)
++|-.....+++++.+..+... ...|. .+|-.||.|+ .+|+..+++| ..-++++|
T Consensus 143 f~GQ~fi~~~l~KI~~lr~~~~---~~~~~-~~IeVDGGI~--~~~i~~~~~a---Gad~~V~G 197 (229)
T PRK09722 143 FAGQPFIPEMLDKIAELKALRE---RNGLE-YLIEVDGSCN--QKTYEKLMEA---GADVFIVG 197 (229)
T ss_pred CcchhccHHHHHHHHHHHHHHH---hcCCC-eEEEEECCCC--HHHHHHHHHc---CCCEEEEC
Confidence 4566666677777776544321 22344 6789999998 6788888876 66788888
Done!