Query 008559
Match_columns 561
No_of_seqs 149 out of 720
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 13:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1E-101 2E-106 818.1 34.6 361 170-553 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.4 0.0039 8.5E-08 62.8 15.3 190 256-505 33-226 (247)
3 TIGR00740 methyltransferase, p 97.0 0.035 7.5E-07 55.4 16.5 166 288-505 55-223 (239)
4 PRK06202 hypothetical protein; 96.7 0.12 2.5E-06 51.4 17.4 143 245-426 24-166 (232)
5 TIGR02752 MenG_heptapren 2-hep 96.1 0.31 6.8E-06 47.9 16.5 180 271-506 35-215 (231)
6 PLN02233 ubiquinone biosynthes 95.9 0.77 1.7E-05 46.9 18.5 169 288-506 75-245 (261)
7 TIGR02716 C20_methyl_CrtF C-20 95.4 0.55 1.2E-05 48.7 15.8 119 270-430 138-258 (306)
8 PRK14103 trans-aconitate 2-met 95.4 0.53 1.1E-05 47.5 15.1 109 272-429 20-128 (255)
9 PF01209 Ubie_methyltran: ubiE 95.1 0.35 7.7E-06 48.9 12.8 180 272-507 38-218 (233)
10 TIGR00477 tehB tellurite resis 94.3 0.32 7E-06 47.4 9.9 113 268-424 17-130 (195)
11 PF13847 Methyltransf_31: Meth 93.6 0.65 1.4E-05 42.9 10.1 106 286-426 3-109 (152)
12 PRK08317 hypothetical protein; 93.4 5.2 0.00011 38.6 16.6 43 273-327 11-53 (241)
13 TIGR01934 MenG_MenH_UbiE ubiqu 93.3 8.1 0.00017 37.1 18.3 46 270-327 28-73 (223)
14 PLN02336 phosphoethanolamine N 92.9 7 0.00015 43.1 18.6 115 269-426 254-368 (475)
15 PRK12335 tellurite resistance 92.7 1.4 2.9E-05 45.6 11.9 111 270-424 109-220 (287)
16 TIGR03438 probable methyltrans 92.6 2.4 5.2E-05 44.3 13.7 113 288-429 65-179 (301)
17 PTZ00098 phosphoethanolamine N 92.6 6 0.00013 40.5 16.3 46 268-327 39-84 (263)
18 COG2226 UbiE Methylase involve 92.5 9.3 0.0002 39.2 17.4 194 255-506 24-221 (238)
19 PRK00216 ubiE ubiquinone/menaq 92.4 9.5 0.00021 37.0 16.9 33 288-327 53-85 (239)
20 PRK11207 tellurite resistance 92.0 2 4.4E-05 41.9 11.5 113 269-425 18-132 (197)
21 PF13489 Methyltransf_23: Meth 90.9 5 0.00011 36.3 12.3 94 288-430 24-119 (161)
22 PLN02244 tocopherol O-methyltr 90.2 4.6 9.9E-05 43.0 13.0 99 288-425 120-221 (340)
23 PF13649 Methyltransf_25: Meth 89.8 0.9 1.9E-05 39.0 6.0 97 290-419 1-99 (101)
24 PF12847 Methyltransf_18: Meth 89.8 1.4 3E-05 37.8 7.3 105 288-426 3-110 (112)
25 PF09243 Rsm22: Mitochondrial 89.6 2.3 4.9E-05 44.0 9.9 144 264-447 12-156 (274)
26 PRK11036 putative S-adenosyl-L 89.4 3.1 6.8E-05 42.0 10.6 112 272-425 36-147 (255)
27 PLN02336 phosphoethanolamine N 89.3 4.2 9.1E-05 44.8 12.3 114 271-426 27-141 (475)
28 PF08241 Methyltransf_11: Meth 88.2 4 8.7E-05 33.2 8.7 94 291-425 1-95 (95)
29 PRK01683 trans-aconitate 2-met 88.2 6.4 0.00014 39.5 11.8 111 270-427 20-130 (258)
30 PF03291 Pox_MCEL: mRNA cappin 88.2 1.5 3.3E-05 46.7 7.6 140 266-430 43-190 (331)
31 TIGR02072 BioC biotin biosynth 87.8 27 0.00059 33.7 16.2 49 269-327 19-67 (240)
32 PRK05134 bifunctional 3-demeth 86.6 27 0.00058 34.4 15.0 21 487-507 183-203 (233)
33 PRK10258 biotin biosynthesis p 83.6 19 0.00041 36.0 12.5 45 268-327 29-73 (251)
34 PRK05785 hypothetical protein; 81.9 37 0.0008 34.0 13.7 91 288-424 53-144 (226)
35 TIGR03587 Pse_Me-ase pseudamin 81.9 18 0.00038 35.8 11.3 38 390-430 109-146 (204)
36 TIGR02021 BchM-ChlM magnesium 81.3 20 0.00043 35.1 11.4 48 266-328 38-87 (219)
37 TIGR00138 gidB 16S rRNA methyl 81.2 10 0.00022 36.7 9.2 100 288-429 44-144 (181)
38 PLN02396 hexaprenyldihydroxybe 80.8 9.1 0.0002 40.8 9.4 99 288-426 133-234 (322)
39 PLN02585 magnesium protoporphy 80.5 20 0.00044 38.0 11.9 101 288-425 146-248 (315)
40 PF00891 Methyltransf_2: O-met 80.0 11 0.00025 37.4 9.4 110 271-430 90-203 (241)
41 COG2227 UbiG 2-polyprenyl-3-me 79.1 5.3 0.00012 41.0 6.7 98 288-425 61-159 (243)
42 PF03848 TehB: Tellurite resis 78.2 16 0.00035 36.2 9.6 112 271-426 20-132 (192)
43 PRK15068 tRNA mo(5)U34 methylt 77.8 68 0.0015 34.0 14.9 134 251-426 79-225 (322)
44 PF02353 CMAS: Mycolic acid cy 76.1 13 0.00028 38.6 8.6 103 288-428 64-167 (273)
45 TIGR00452 methyltransferase, p 76.0 29 0.00062 36.9 11.4 102 288-426 123-224 (314)
46 PRK11705 cyclopropane fatty ac 74.9 29 0.00062 37.8 11.3 32 288-328 169-200 (383)
47 TIGR02081 metW methionine bios 73.5 41 0.00088 32.4 10.9 31 288-327 15-45 (194)
48 smart00138 MeTrc Methyltransfe 72.8 15 0.00032 37.8 8.1 43 287-329 100-143 (264)
49 PRK06922 hypothetical protein; 72.5 28 0.00061 40.8 10.9 107 288-425 420-535 (677)
50 PRK00107 gidB 16S rRNA methylt 72.0 94 0.002 30.4 13.1 97 288-427 47-145 (187)
51 PRK07580 Mg-protoporphyrin IX 71.8 82 0.0018 30.6 12.8 31 288-328 65-95 (230)
52 COG2230 Cfa Cyclopropane fatty 69.8 52 0.0011 34.7 11.3 100 288-425 74-174 (283)
53 PRK09489 rsmC 16S ribosomal RN 69.0 73 0.0016 34.2 12.6 121 269-429 184-305 (342)
54 PRK11873 arsM arsenite S-adeno 69.0 64 0.0014 32.7 11.7 100 288-425 79-181 (272)
55 PRK00274 ksgA 16S ribosomal RN 67.9 35 0.00076 35.1 9.6 63 254-327 10-73 (272)
56 PRK10909 rsmD 16S rRNA m(2)G96 67.1 81 0.0017 31.3 11.6 104 288-430 55-162 (199)
57 smart00828 PKS_MT Methyltransf 66.7 50 0.0011 32.2 10.1 100 289-425 2-102 (224)
58 PF08242 Methyltransf_12: Meth 65.7 14 0.0003 31.2 5.2 31 291-329 1-31 (99)
59 COG4106 Tam Trans-aconitate me 63.2 30 0.00065 35.5 7.7 101 288-430 32-132 (257)
60 TIGR00091 tRNA (guanine-N(7)-) 61.4 60 0.0013 31.4 9.4 116 288-430 18-135 (194)
61 PF07521 RMMBL: RNA-metabolisi 59.7 18 0.0004 27.0 4.3 38 386-425 1-38 (43)
62 TIGR03439 methyl_EasF probable 59.7 70 0.0015 34.2 10.2 142 288-456 78-234 (319)
63 PRK13255 thiopurine S-methyltr 57.9 2E+02 0.0042 28.8 12.6 31 288-328 39-69 (218)
64 PLN02490 MPBQ/MSBQ methyltrans 57.2 1.5E+02 0.0033 31.9 12.3 32 288-327 115-146 (340)
65 PF13679 Methyltransf_32: Meth 56.2 41 0.00089 31.0 6.9 39 286-328 25-63 (141)
66 TIGR03534 RF_mod_PrmC protein- 55.7 1.7E+02 0.0037 28.7 11.7 32 288-327 89-120 (251)
67 TIGR01983 UbiG ubiquinone bios 55.6 1.8E+02 0.0038 28.2 11.7 116 271-426 31-148 (224)
68 smart00650 rADc Ribosomal RNA 50.4 2.2E+02 0.0048 26.7 11.3 42 272-328 4-45 (169)
69 TIGR00537 hemK_rel_arch HemK-r 49.0 2.4E+02 0.0051 26.6 12.9 30 288-327 21-50 (179)
70 PRK14968 putative methyltransf 48.7 2.3E+02 0.0049 26.4 11.8 30 288-327 25-54 (188)
71 PRK15001 SAM-dependent 23S rib 46.2 1.2E+02 0.0027 33.1 9.7 122 271-428 218-341 (378)
72 PRK11088 rrmA 23S rRNA methylt 44.2 3.6E+02 0.0079 27.4 12.6 71 245-327 51-121 (272)
73 PF12147 Methyltransf_20: Puta 43.6 2.5E+02 0.0055 30.1 11.0 138 271-443 121-262 (311)
74 TIGR00755 ksgA dimethyladenosi 41.9 2.4E+02 0.0052 28.4 10.5 51 266-327 10-60 (253)
75 COG0075 Serine-pyruvate aminot 41.2 65 0.0014 35.4 6.6 150 347-506 91-290 (383)
76 PTZ00338 dimethyladenosine tra 40.9 1E+02 0.0022 32.4 7.8 51 266-327 17-67 (294)
77 TIGR03840 TMPT_Se_Te thiopurin 40.7 3.8E+02 0.0083 26.7 12.0 31 288-328 36-66 (213)
78 PRK00121 trmB tRNA (guanine-N( 40.6 2.3E+02 0.0051 27.6 9.9 33 288-328 42-74 (202)
79 PRK04457 spermidine synthase; 40.3 2.7E+02 0.0059 28.6 10.7 32 288-327 68-99 (262)
80 PRK13944 protein-L-isoaspartat 38.6 3.5E+02 0.0076 26.4 10.8 43 273-327 64-106 (205)
81 PRK13168 rumA 23S rRNA m(5)U19 37.2 3.4E+02 0.0074 29.9 11.5 103 288-430 299-403 (443)
82 PF05175 MTS: Methyltransferas 35.1 3.9E+02 0.0085 25.2 11.2 120 268-425 18-138 (170)
83 PLN03075 nicotianamine synthas 32.7 3.6E+02 0.0077 28.7 10.2 108 288-427 125-233 (296)
84 TIGR03533 L3_gln_methyl protei 32.0 5.9E+02 0.013 26.3 12.0 33 288-328 123-155 (284)
85 PRK14967 putative methyltransf 30.9 4.7E+02 0.01 25.7 10.3 31 288-327 38-68 (223)
86 PRK14896 ksgA 16S ribosomal RN 30.5 2.4E+02 0.0052 28.7 8.4 51 266-327 10-60 (258)
87 PRK08287 cobalt-precorrin-6Y C 29.6 4.9E+02 0.011 24.6 12.5 33 288-328 33-65 (187)
88 PF05086 Dicty_REP: Dictyostel 29.2 88 0.0019 37.3 5.3 14 185-198 366-379 (911)
89 PRK14121 tRNA (guanine-N(7)-)- 29.2 5.7E+02 0.012 28.3 11.4 42 273-327 114-155 (390)
90 TIGR01716 RGG_Cterm transcript 29.2 1.2E+02 0.0025 29.6 5.7 56 169-224 126-182 (220)
91 TIGR02469 CbiT precorrin-6Y C5 29.1 3.6E+02 0.0078 22.9 12.1 33 288-328 21-53 (124)
92 PRK03522 rumB 23S rRNA methylu 28.9 6.2E+02 0.013 26.5 11.4 102 288-430 175-277 (315)
93 PRK05723 flavodoxin; Provision 27.9 5.2E+02 0.011 24.4 11.4 126 344-497 14-145 (151)
94 TIGR01626 ytfJ_HI0045 conserve 27.2 2.8E+02 0.006 27.4 7.8 109 288-417 61-182 (184)
95 KOG1975 mRNA cap methyltransfe 25.5 1.1E+02 0.0024 33.3 4.9 133 266-430 104-241 (389)
96 PF15281 Consortin_C: Consorti 25.3 92 0.002 28.5 3.7 83 100-219 11-94 (113)
97 PF11455 DUF3018: Protein of 25.1 39 0.00085 28.1 1.2 20 488-507 3-22 (65)
98 cd02440 AdoMet_MTases S-adenos 23.8 3.5E+02 0.0076 21.0 9.8 31 289-328 1-31 (107)
99 KOG4060 Uncharacterized conser 22.3 4.7E+02 0.01 25.5 7.9 89 318-428 56-152 (176)
100 KOG1165 Casein kinase (serine/ 22.1 47 0.001 36.3 1.5 13 284-296 164-176 (449)
101 PF02310 B12-binding: B12 bind 21.9 1E+02 0.0022 26.8 3.4 70 348-425 17-86 (121)
102 TIGR00417 speE spermidine synt 20.4 6.4E+02 0.014 25.7 9.4 31 289-327 75-105 (270)
103 PRK11805 N5-glutamine S-adenos 20.4 7.8E+02 0.017 25.9 10.2 33 288-328 135-167 (307)
104 PLN02446 (5-phosphoribosyl)-5- 20.1 1.1E+02 0.0024 32.0 3.6 27 278-310 55-81 (262)
105 PF06415 iPGM_N: BPG-independe 20.1 5.5E+02 0.012 26.3 8.5 90 265-368 8-102 (223)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.1e-101 Score=818.09 Aligned_cols=361 Identities=37% Similarity=0.571 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCCCCchHHH
Q 008559 170 AEQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSLSSSSTTTTSTGPLTFSSTEPRFFQ 249 (561)
Q Consensus 170 l~~LLl~CA~AV~~gn~~~A~~lL~~L~~laSp~Gd~~qRlA~yFaeAL~~RL~g~~~~~~~~~s~~~~~~~s~~~~~~~ 249 (561)
|++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.+..... ......+.....
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPP--SSPSPSESSEQL 78 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCC--ccccccchHHHH
Confidence 589999999999999999999999999999999999999999999999999999977652111100 001112245678
Q ss_pred HHHHHhhccCCCCCchhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCC
Q 008559 250 KSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAE 329 (561)
Q Consensus 250 ~A~~~f~e~sP~~kfahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~ 329 (561)
.||+.||++|||+||+|||||||||||++|+++ ||||||||++|+|||+|||+||.|++||| +||||||+++.+
T Consensus 79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~-----vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~ 152 (374)
T PF03514_consen 79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERR-----VHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNS 152 (374)
T ss_pred HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcc-----eEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCC
Confidence 899999999999999999999999999999999 99999999999999999999999999988 899999999764
Q ss_pred cCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCC---Cch
Q 008559 330 NDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHST---PDE 406 (561)
Q Consensus 330 ~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es---~~~ 406 (561)
.. ...+++||+||.+||+++||||||++|...+||++++++|++++||+|||||+|+||||.+++ .++
T Consensus 153 ~~---------~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~ 223 (374)
T PF03514_consen 153 GS---------ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENP 223 (374)
T ss_pred Cc---------HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccch
Confidence 21 256899999999999999999999998666999999999999999999999999999999764 358
Q ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhhe----------eee
Q 008559 407 RTEFLRVLRSLEPKGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVME----------GEA 476 (561)
Q Consensus 407 r~~~L~~IR~L~PkvVvlvE~ead~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iE----------ivA 476 (561)
|+.||+.||+|+|+|||++|+|+| ||+++|++||.|||+||+++|||||++ +|+++.+|..+| |||
T Consensus 224 ~~~~L~~ir~L~P~vvv~~E~ea~---~n~~~F~~RF~eal~yYsalfdsle~~-~~~~~~~r~~~E~~~~~~eI~niVa 299 (374)
T PF03514_consen 224 RDAFLRVIRSLNPKVVVLVEQEAD---HNSPSFLERFREALHYYSALFDSLEAC-LPRDSEERLAVERLFFGREIMNIVA 299 (374)
T ss_pred HHHHHHHHHhcCCCEEEEEeecCC---CCCCchHHHHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhhhHHHHhhh
Confidence 999999999999999999999999 999999999999999999999999955 578889998888 899
Q ss_pred ecccccccccccChHHHHHHHhcCCCccccCChhHHHHHHHHHhhcCCCcceEEEeeCCEEEEEeCCceeEEEEeee
Q 008559 477 AKALTNRAEMNEGKDKWCDRMRGVGFVGDVFGEDAIDGGRALLRKYDNSWETRVEERDGCIELWWKGQPVSFCSLWK 553 (561)
Q Consensus 477 ~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vpls~~a~~qAr~LL~~~~~~~~~~vee~~g~L~LgWkgrpL~~~SAWr 553 (561)
|||.+|+ ||||++++|+.||.+|||+++|+|++++.|||.||++|+ +.+|++++++|||+||||++||+++|+||
T Consensus 300 ~eg~~R~-eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 300 CEGEERV-ERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred ccccccc-ccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999 999999999999999999999999999999999999998 55677788999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.45 E-value=0.0039 Score=62.84 Aligned_cols=190 Identities=16% Similarity=0.218 Sum_probs=100.5
Q ss_pred hccCCCCCchhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCC
Q 008559 256 YDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAE 335 (561)
Q Consensus 256 ~e~sP~~kfahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~ 335 (561)
....|.+...|-+++..+ ...-. .. -+|+|+|.|.|.- ...|+.+-.. | ..++|||+.+..-
T Consensus 33 ~~~~p~y~~~~~~~~~~~-~~~~~-~~-----~~vLDlGcGtG~~----~~~l~~~~~~-~-~~~v~gvD~S~~m----- 94 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLA-ERFVQ-PG-----TQVYDLGCSLGAA----TLSVRRNIHH-D-NCKIIAIDNSPAM----- 94 (247)
T ss_pred HhcCCChHHHHHHHHHHH-HHhCC-CC-----CEEEEEcccCCHH----HHHHHHhcCC-C-CCeEEEEeCCHHH-----
Confidence 456788887777766433 33222 22 6799999999963 3334442112 3 4899999975421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCc--eEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHH
Q 008559 336 TPFSVGPPGDNYSLQLLGFAKSMNI--NLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRV 413 (561)
Q Consensus 336 ~pf~~~~~l~etg~rL~~fA~~lgV--pFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~ 413 (561)
++.+.+++ +..++ .++| +.. .++++. ....++++ +.+.|||+.+ ..+..+|+.
T Consensus 95 --------l~~A~~~~----~~~~~~~~v~~--~~~-d~~~~~-----~~~~D~vv--~~~~l~~l~~---~~~~~~l~~ 149 (247)
T PRK15451 95 --------IERCRRHI----DAYKAPTPVDV--IEG-DIRDIA-----IENASMVV--LNFTLQFLEP---SERQALLDK 149 (247)
T ss_pred --------HHHHHHHH----HhcCCCCCeEE--EeC-ChhhCC-----CCCCCEEe--hhhHHHhCCH---HHHHHHHHH
Confidence 23333333 33333 3444 333 333332 22234443 4477888864 346677776
Q ss_pred H-HhcCCCEE-EEEeccCCCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhheeeeecccccccccccChH
Q 008559 414 L-RSLEPKGV-ILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKD 491 (561)
Q Consensus 414 I-R~L~PkvV-vlvE~ead~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~ 491 (561)
| +.|+|... +++|.-.. ....+...+.+..+.| . ... +-...|.... .+..+++ -++++.+
T Consensus 150 i~~~LkpGG~l~l~e~~~~----~~~~~~~~~~~~~~~~---~---~~~--g~s~~ei~~~----~~~~~~~-~~~~~~~ 212 (247)
T PRK15451 150 IYQGLNPGGALVLSEKFSF----EDAKVGELLFNMHHDF---K---RAN--GYSELEISQK----RSMLENV-MLTDSVE 212 (247)
T ss_pred HHHhcCCCCEEEEEEecCC----CcchhHHHHHHHHHHH---H---HHc--CCCHHHHHHH----HHHHHhh-cccCCHH
Confidence 6 66899855 45564333 2333333333322222 1 111 1111111000 1223345 5678889
Q ss_pred HHHHHHhcCCCccc
Q 008559 492 KWCDRMRGVGFVGD 505 (561)
Q Consensus 492 ~Wr~Rm~~AGF~~v 505 (561)
+..++|++|||..+
T Consensus 213 ~~~~~L~~aGF~~v 226 (247)
T PRK15451 213 THKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHcCchhH
Confidence 99999999999865
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.99 E-value=0.035 Score=55.39 Aligned_cols=166 Identities=19% Similarity=0.290 Sum_probs=85.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-+|+|+|.|.|. ++..|+.+-.. | ..++|||+.... -++.+.+++.++.. +..++| +
T Consensus 55 ~~iLDlGcG~G~----~~~~l~~~~~~-p-~~~v~gvD~s~~-------------ml~~a~~~~~~~~~--~~~v~~--~ 111 (239)
T TIGR00740 55 SNVYDLGCSRGA----ATLSARRNINQ-P-NVKIIGIDNSQP-------------MVERCRQHIAAYHS--EIPVEI--L 111 (239)
T ss_pred CEEEEecCCCCH----HHHHHHHhcCC-C-CCeEEEEeCCHH-------------HHHHHHHHHHhcCC--CCCeEE--E
Confidence 589999999994 55666655222 3 489999987532 12333444433211 223344 3
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEE-eccCCCCCCCCCChhhHHHH
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILS-ENNMDCSCGNCGDFATGFAR 445 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlv-E~ead~~~~n~~~F~~RF~e 445 (561)
.. .+.++.. .+.. +|-|.+.|||+.+ ..+..+|+.+ |.|+|..++++ |.-.. ..... .+
T Consensus 112 ~~-d~~~~~~-----~~~d--~v~~~~~l~~~~~---~~~~~~l~~i~~~LkpgG~l~i~d~~~~----~~~~~----~~ 172 (239)
T TIGR00740 112 CN-DIRHVEI-----KNAS--MVILNFTLQFLPP---EDRIALLTKIYEGLNPNGVLVLSEKFRF----EDTKI----NH 172 (239)
T ss_pred EC-ChhhCCC-----CCCC--EEeeecchhhCCH---HHHHHHHHHHHHhcCCCeEEEEeecccC----CCHhH----HH
Confidence 32 3333322 2223 3445677898864 2455677666 56899987775 43222 22211 12
Q ss_pred HH-HHHHHHHhhhhhhcCCCChHHhhhheeeeecccccccccccChHHHHHHHhcCCCccc
Q 008559 446 RV-EYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGD 505 (561)
Q Consensus 446 aL-~yY~alfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~v 505 (561)
.+ ..|..+.. .. +...++.... .+-...+ .+..+.+.|...|+.|||..+
T Consensus 173 ~~~~~~~~~~~-~~----g~~~~~~~~~----~~~~~~~-~~~~s~~~~~~~l~~aGF~~~ 223 (239)
T TIGR00740 173 LLIDLHHQFKR-AN----GYSELEISQK----RTALENV-MRTDSIETHKARLKNVGFSHV 223 (239)
T ss_pred HHHHHHHHHHH-Hc----CCCHHHHHHH----HHHHhcc-CCCCCHHHHHHHHHHcCCchH
Confidence 22 22222221 11 1111111110 1122234 567788999999999999743
No 4
>PRK06202 hypothetical protein; Provisional
Probab=96.69 E-value=0.12 Score=51.39 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=69.3
Q ss_pred chHHHHHHHHhhccCCCCCchhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEe
Q 008559 245 PRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTII 324 (561)
Q Consensus 245 ~~~~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI 324 (561)
+..+.+.|..+-.+.++..--+-+-.+.+...+...+. ..|+|+|.|.|. ....|.....+ .|+ ..+||||
T Consensus 24 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~-----~~iLDlGcG~G~-~~~~L~~~~~~-~g~--~~~v~gv 94 (232)
T PRK06202 24 PARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRP-----LTLLDIGCGGGD-LAIDLARWARR-DGL--RLEVTAI 94 (232)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCC-----cEEEEeccCCCH-HHHHHHHHHHh-CCC--CcEEEEE
Confidence 44455555555444443331122222333333332233 789999999996 33333222222 244 3799999
Q ss_pred cCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCC
Q 008559 325 APTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTP 404 (561)
Q Consensus 325 ~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~ 404 (561)
+....- ++...++ +..-++.+.. ... +.+. ..++..=+|-|.+.|||+.+
T Consensus 95 D~s~~~-------------l~~a~~~----~~~~~~~~~~--~~~---~~l~-----~~~~~fD~V~~~~~lhh~~d--- 144 (232)
T PRK06202 95 DPDPRA-------------VAFARAN----PRRPGVTFRQ--AVS---DELV-----AEGERFDVVTSNHFLHHLDD--- 144 (232)
T ss_pred cCCHHH-------------HHHHHhc----cccCCCeEEE--Eec---cccc-----ccCCCccEEEECCeeecCCh---
Confidence 875321 1111111 1122444433 322 1121 12333334445567999975
Q ss_pred chHHHHHHHHHhcCCCEEEEEe
Q 008559 405 DERTEFLRVLRSLEPKGVILSE 426 (561)
Q Consensus 405 ~~r~~~L~~IR~L~PkvVvlvE 426 (561)
.....+|+.+.++.-.++++.+
T Consensus 145 ~~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 145 AEVVRLLADSAALARRLVLHND 166 (232)
T ss_pred HHHHHHHHHHHHhcCeeEEEec
Confidence 2356788888665545555443
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.10 E-value=0.31 Score=47.92 Aligned_cols=180 Identities=12% Similarity=0.154 Sum_probs=87.6
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
+.+++.+.=... -+|+|+|.|.|. +...|+.+- +| ..++|||+.... .++.+.++
T Consensus 35 ~~~l~~l~~~~~-----~~vLDiGcG~G~----~~~~la~~~--~~-~~~v~gvD~s~~-------------~~~~a~~~ 89 (231)
T TIGR02752 35 KDTMKRMNVQAG-----TSALDVCCGTAD----WSIALAEAV--GP-EGHVIGLDFSEN-------------MLSVGRQK 89 (231)
T ss_pred HHHHHhcCCCCC-----CEEEEeCCCcCH----HHHHHHHHh--CC-CCEEEEEECCHH-------------HHHHHHHH
Confidence 445555543333 689999999997 334555542 12 478999987432 12222333
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHH-HHHhcCCCEEEEEeccC
Q 008559 351 LLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLR-VLRSLEPKGVILSENNM 429 (561)
Q Consensus 351 L~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~-~IR~L~PkvVvlvE~ea 429 (561)
++..+++ .+..+.. ..+++.. .-..=+.|+ +.+.+|++.+ . ..+|+ ..+.|+|...+++-...
T Consensus 90 ----~~~~~~~-~v~~~~~-d~~~~~~---~~~~fD~V~--~~~~l~~~~~----~-~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 90 ----VKDAGLH-NVELVHG-NAMELPF---DDNSFDYVT--IGFGLRNVPD----Y-MQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ----HHhcCCC-ceEEEEe-chhcCCC---CCCCccEEE--EecccccCCC----H-HHHHHHHHHHcCcCeEEEEEECC
Confidence 2333442 2233332 2222221 111113444 3456777753 3 44555 45779999766653333
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhheeeeecccccccccccChHHHHHHHhcCCCcccc
Q 008559 430 DCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDV 506 (561)
Q Consensus 430 d~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vp 506 (561)
. .+.. .+...+.+|...+-.+...+..+...+...+ ...+ .+--+.++++..|+.+||..+.
T Consensus 154 ~---~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~l~~~l~~aGf~~~~ 215 (231)
T TIGR02752 154 Q---PTIP----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL-------QEST-RDFPGMDELAEMFQEAGFKDVE 215 (231)
T ss_pred C---CCCh----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH-------HHHH-HHcCCHHHHHHHHHHcCCCeeE
Confidence 3 2322 3444444443322222212222211111111 0112 3344668899999999998764
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.85 E-value=0.77 Score=46.93 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=84.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-+|+|+|.|.|. +...|+.+- | | .-+||||+.+..- ++.+.++....+....-..+|..-
T Consensus 75 ~~VLDlGcGtG~----~~~~la~~~-~-~-~~~V~gvD~S~~m-------------l~~A~~r~~~~~~~~~~~i~~~~~ 134 (261)
T PLN02233 75 DRVLDLCCGSGD----LAFLLSEKV-G-S-DGKVMGLDFSSEQ-------------LAVAASRQELKAKSCYKNIEWIEG 134 (261)
T ss_pred CEEEEECCcCCH----HHHHHHHHh-C-C-CCEEEEEECCHHH-------------HHHHHHHhhhhhhccCCCeEEEEc
Confidence 689999999997 345566653 2 2 3689999875421 233333332112222223333322
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEE-EEeccCCCCCCCCCChhhHHHHH
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVI-LSENNMDCSCGNCGDFATGFARR 446 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVv-lvE~ead~~~~n~~~F~~RF~ea 446 (561)
..++ +...++..=+|-+.+.|||+.+ +...+-+..|-|+|...+ ++|-... ...|...+.+
T Consensus 135 ---d~~~-----lp~~~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~~~-----~~~~~~~~~~- 196 (261)
T PLN02233 135 ---DATD-----LPFDDCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDFNKS-----TQPFTTSMQE- 196 (261)
T ss_pred ---cccc-----CCCCCCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEECCCC-----CcHHHHHHHH-
Confidence 2232 3344444445556788998863 444444455779998654 4454433 2344444432
Q ss_pred HHHHHH-HHhhhhhhcCCCChHHhhhheeeeecccccccccccChHHHHHHHhcCCCcccc
Q 008559 447 VEYLWR-FLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDV 506 (561)
Q Consensus 447 L~yY~a-lfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vp 506 (561)
+|.. ++--+...+ +....-+-+ ...+ ++.-+.+.....|+.+||+.+.
T Consensus 197 --~~~~~~~~~~~~~~-~~~~~y~~l--------~~s~-~~f~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 197 --WMIDNVVVPVATGY-GLAKEYEYL--------KSSI-NEYLTGEELEKLALEAGFSSAK 245 (261)
T ss_pred --HHHhhhhhHHHHHh-CChHHHHHH--------HHHH-HhcCCHHHHHHHHHHCCCCEEE
Confidence 2211 000011000 100000000 0123 4455677888999999998663
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.41 E-value=0.55 Score=48.70 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=66.2
Q ss_pred hHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHH
Q 008559 270 NSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSL 349 (561)
Q Consensus 270 NqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~ 349 (561)
.+.|++.+.-... -+|+|+|.|.| .+...++++- | .+++|+++.+. +-+
T Consensus 138 ~~~l~~~~~~~~~-----~~vlDiG~G~G----~~~~~~~~~~---p-~~~~~~~D~~~------------------~~~ 186 (306)
T TIGR02716 138 IQLLLEEAKLDGV-----KKMIDVGGGIG----DISAAMLKHF---P-ELDSTILNLPG------------------AID 186 (306)
T ss_pred HHHHHHHcCCCCC-----CEEEEeCCchh----HHHHHHHHHC---C-CCEEEEEecHH------------------HHH
Confidence 4567777654444 79999999999 3555666653 3 58999997631 112
Q ss_pred HHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEE-EEec
Q 008559 350 QLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVI-LSEN 427 (561)
Q Consensus 350 rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVv-lvE~ 427 (561)
...+.++..|+.=.++.+.. +..+. . +...+++++. ..||+..+ .....+|+.+ +.|+|...+ ++|.
T Consensus 187 ~a~~~~~~~gl~~rv~~~~~-d~~~~---~--~~~~D~v~~~--~~lh~~~~---~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 187 LVNENAAEKGVADRMRGIAV-DIYKE---S--YPEADAVLFC--RILYSANE---QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHhCCccceEEEEec-CccCC---C--CCCCCEEEeE--hhhhcCCh---HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 23344555565423333433 22111 1 2223444332 35676653 2345677665 679997655 4565
Q ss_pred cCC
Q 008559 428 NMD 430 (561)
Q Consensus 428 ead 430 (561)
-.+
T Consensus 256 ~~~ 258 (306)
T TIGR02716 256 VID 258 (306)
T ss_pred ccC
Confidence 443
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.37 E-value=0.53 Score=47.49 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=64.1
Q ss_pred HHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHH
Q 008559 272 SILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQL 351 (561)
Q Consensus 272 AILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL 351 (561)
.+++.+.-... -+|+|+|.|.| .+...|+.+- | ..++|||+... .+
T Consensus 20 ~ll~~l~~~~~-----~~vLDlGcG~G----~~~~~l~~~~---p-~~~v~gvD~s~---------------------~~ 65 (255)
T PRK14103 20 DLLARVGAERA-----RRVVDLGCGPG----NLTRYLARRW---P-GAVIEALDSSP---------------------EM 65 (255)
T ss_pred HHHHhCCCCCC-----CEEEEEcCCCC----HHHHHHHHHC---C-CCEEEEEECCH---------------------HH
Confidence 46666654444 78999999999 3556777763 3 36899998742 23
Q ss_pred HHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEeccC
Q 008559 352 LGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNM 429 (561)
Q Consensus 352 ~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ea 429 (561)
.+.|+..++.|. . . ..+++.+ .+..=+|-|.+.|||+.+ +...+-+..+.|+|...+++....
T Consensus 66 ~~~a~~~~~~~~--~--~-d~~~~~~------~~~fD~v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 66 VAAARERGVDAR--T--G-DVRDWKP------KPDTDVVVSNAALQWVPE----HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHhcCCcEE--E--c-ChhhCCC------CCCceEEEEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 344555565442 1 2 2333211 122333444556788863 444444455779999888776433
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.11 E-value=0.35 Score=48.86 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHH
Q 008559 272 SILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQL 351 (561)
Q Consensus 272 AILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL 351 (561)
.+++.+...+. .+|+|++.|.|- +...|+++- || .-+|+|++.+.. -++...+++
T Consensus 38 ~~~~~~~~~~g-----~~vLDv~~GtG~----~~~~l~~~~-~~--~~~v~~vD~s~~-------------ML~~a~~k~ 92 (233)
T PF01209_consen 38 KLIKLLGLRPG-----DRVLDVACGTGD----VTRELARRV-GP--NGKVVGVDISPG-------------MLEVARKKL 92 (233)
T ss_dssp HHHHHHT--S-------EEEEET-TTSH----HHHHHGGGS-S-----EEEEEES-HH-------------HHHHHHHHH
T ss_pred HHHhccCCCCC-----CEEEEeCCChHH----HHHHHHHHC-CC--ccEEEEecCCHH-------------HHHHHHHHH
Confidence 44555555555 799999999995 334455553 22 469999987542 133444444
Q ss_pred HHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEE-EeccCC
Q 008559 352 LGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVIL-SENNMD 430 (561)
Q Consensus 352 ~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvl-vE~ead 430 (561)
.+.... +.+|..-. .+.|...++..=+|-|.|.||++.+ ....+-...|-|+|...++ +|-.--
T Consensus 93 ~~~~~~---~i~~v~~d--------a~~lp~~d~sfD~v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 93 KREGLQ---NIEFVQGD--------AEDLPFPDNSFDAVTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHTT-----SEEEEE-B--------TTB--S-TT-EEEEEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhhCCC---CeeEEEcC--------HHHhcCCCCceeEEEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 433322 33333322 2445566777888999999999875 4445555567799987544 454332
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhheeeeecccccccccccChHHHHHHHhcCCCccccC
Q 008559 431 CSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRMRGVGFVGDVF 507 (561)
Q Consensus 431 ~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm~~AGF~~vpl 507 (561)
.+ . -+......|...+-=+-..+..++..+ ..-+. +-+ ++--..++=.+.|+.+||+.+..
T Consensus 158 ---~~--~---~~~~~~~~y~~~ilP~~g~l~~~~~~~---Y~yL~----~Si-~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 158 ---RN--P---LLRALYKFYFKYILPLIGRLLSGDREA---YRYLP----ESI-RRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp ---SS--H---HHHHHHHH----------------------------------------------------------
T ss_pred ---CC--c---hhhceeeeeeccccccccccccccccc---ccccc----ccc-ccccccccccccccccccccccc
Confidence 11 2 233333344442211111222222111 11111 112 33334456678889999987654
No 10
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=94.27 E-value=0.32 Score=47.35 Aligned_cols=113 Identities=13% Similarity=0.201 Sum_probs=67.4
Q ss_pred hhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHH
Q 008559 268 IANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNY 347 (561)
Q Consensus 268 tANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~et 347 (561)
.+...|++.+.-... -+|+|+|.|.|.-- ..|+.+ | .++|||+.+. ++
T Consensus 17 ~~~~~l~~~~~~~~~-----~~vLDiGcG~G~~a----~~la~~--g----~~V~~iD~s~-----------------~~ 64 (195)
T TIGR00477 17 TTHSAVREAVKTVAP-----CKTLDLGCGQGRNS----LYLSLA--G----YDVRAWDHNP-----------------AS 64 (195)
T ss_pred CchHHHHHHhccCCC-----CcEEEeCCCCCHHH----HHHHHC--C----CeEEEEECCH-----------------HH
Confidence 556788888865555 78999999999743 344444 2 4789998743 23
Q ss_pred HHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEE
Q 008559 348 SLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVIL 424 (561)
Q Consensus 348 g~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvl 424 (561)
-..+.+.++..|+++++.... ++... +. ..=+.|+ |.+.+|++.. ..+..+++.+ +.|+|..+++
T Consensus 65 l~~a~~~~~~~~~~v~~~~~d---~~~~~---~~-~~fD~I~--~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 65 IASVLDMKARENLPLRTDAYD---INAAA---LN-EDYDFIF--STVVFMFLQA---GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred HHHHHHHHHHhCCCceeEecc---chhcc---cc-CCCCEEE--EecccccCCH---HHHHHHHHHHHHHhCCCcEEE
Confidence 344555666667775544332 22111 11 1123443 3345677753 3566777776 5699998643
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.59 E-value=0.65 Score=42.86 Aligned_cols=106 Identities=21% Similarity=0.338 Sum_probs=63.4
Q ss_pred cceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEE
Q 008559 286 QNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQI 364 (561)
Q Consensus 286 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF 364 (561)
+..+|+|+|.|.|.. +..|+.+- +| ..+||||+... +.-+...+.++.++++ ++|
T Consensus 3 ~~~~iLDlGcG~G~~----~~~l~~~~-~~--~~~i~gvD~s~-----------------~~i~~a~~~~~~~~~~ni~~ 58 (152)
T PF13847_consen 3 SNKKILDLGCGTGRL----LIQLAKEL-NP--GAKIIGVDISE-----------------EMIEYAKKRAKELGLDNIEF 58 (152)
T ss_dssp TTSEEEEET-TTSHH----HHHHHHHS-TT--TSEEEEEESSH-----------------HHHHHHHHHHHHTTSTTEEE
T ss_pred CCCEEEEecCcCcHH----HHHHHHhc-CC--CCEEEEEECcH-----------------HHHHHhhcccccccccccce
Confidence 458999999999854 34455321 22 36799998753 3456666677778887 555
Q ss_pred EEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEe
Q 008559 365 NRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSE 426 (561)
Q Consensus 365 ~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE 426 (561)
..- +++++... +. +..=+|.+...|||+.+ +...+-+..+.|+|..++++.
T Consensus 59 ~~~---d~~~l~~~-~~---~~~D~I~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 59 IQG---DIEDLPQE-LE---EKFDIIISNGVLHHFPD----PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp EES---BTTCGCGC-SS---TTEEEEEEESTGGGTSH----HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEe---ehhccccc-cC---CCeeEEEEcCchhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 553 44444433 33 33333444455577753 444444556779999777653
No 12
>PRK08317 hypothetical protein; Provisional
Probab=93.43 E-value=5.2 Score=38.62 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=27.8
Q ss_pred HHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 273 ILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 273 ILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
+++.+.-.+. -+|+|+|.|.|. +...++.+- + | .-++++|+..
T Consensus 11 ~~~~~~~~~~-----~~vLdiG~G~G~----~~~~~a~~~-~-~-~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPG-----DRVLDVGCGPGN----DARELARRV-G-P-EGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCC-----CEEEEeCCCCCH----HHHHHHHhc-C-C-CcEEEEEeCC
Confidence 4555554444 789999999974 333444442 2 3 4689999874
No 13
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.29 E-value=8.1 Score=37.13 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 270 NSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 270 NqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-+.+++.+.-.+. ..|+|+|.|.|. +...++.+ +|+ ..++++|+..
T Consensus 28 ~~~~~~~~~~~~~-----~~vldiG~G~G~----~~~~~~~~--~~~-~~~~~~iD~~ 73 (223)
T TIGR01934 28 RRRAVKLIGVFKG-----QKVLDVACGTGD----LAIELAKS--APD-RGKVTGVDFS 73 (223)
T ss_pred HHHHHHHhccCCC-----CeEEEeCCCCCh----hHHHHHHh--cCC-CceEEEEECC
Confidence 3455555544444 899999999985 34445544 233 3789999874
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.94 E-value=7 Score=43.07 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=63.0
Q ss_pred hhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHH
Q 008559 269 ANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYS 348 (561)
Q Consensus 269 ANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg 348 (561)
....+++.+.-.+. -+|+|+|.|.|. +...|+.+. | .++|||+.+... ++.+.
T Consensus 254 ~te~l~~~~~~~~~-----~~vLDiGcG~G~----~~~~la~~~-~----~~v~gvDiS~~~-------------l~~A~ 306 (475)
T PLN02336 254 TTKEFVDKLDLKPG-----QKVLDVGCGIGG----GDFYMAENF-D----VHVVGIDLSVNM-------------ISFAL 306 (475)
T ss_pred HHHHHHHhcCCCCC-----CEEEEEeccCCH----HHHHHHHhc-C----CEEEEEECCHHH-------------HHHHH
Confidence 34456666542233 689999999995 445677664 2 489999875321 11222
Q ss_pred HHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEe
Q 008559 349 LQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSE 426 (561)
Q Consensus 349 ~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE 426 (561)
++ +...+...+|.... +.++ .+.++..=+|-|...++|+.+ +...+-+..|.|+|...+++.
T Consensus 307 ~~----~~~~~~~v~~~~~d---~~~~-----~~~~~~fD~I~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 307 ER----AIGRKCSVEFEVAD---CTKK-----TYPDNSFDVIYSRDTILHIQD----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred HH----hhcCCCceEEEEcC---cccC-----CCCCCCEEEEEECCcccccCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 21 22334445554432 2221 122233334455566788863 444444445679999887765
No 15
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.69 E-value=1.4 Score=45.61 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=65.6
Q ss_pred hHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHH
Q 008559 270 NSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSL 349 (561)
Q Consensus 270 NqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~ 349 (561)
.+.+++++.--+. -+|+|+|.|.|. +...|+.+ | .++|||+.+. +.-+
T Consensus 109 ~~~~~~~~~~~~~-----~~vLDlGcG~G~----~~~~la~~--g----~~V~avD~s~-----------------~ai~ 156 (287)
T PRK12335 109 HSEVLEAVQTVKP-----GKALDLGCGQGR----NSLYLALL--G----FDVTAVDINQ-----------------QSLE 156 (287)
T ss_pred cHHHHHHhhccCC-----CCEEEeCCCCCH----HHHHHHHC--C----CEEEEEECCH-----------------HHHH
Confidence 3456666643333 489999999997 34456664 2 5899998753 2345
Q ss_pred HHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEE
Q 008559 350 QLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVIL 424 (561)
Q Consensus 350 rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvl 424 (561)
.+.+.|+..++++++.... ++... +. ..=+.|+.+ +.||++.. ..+..+|+.+ +.|+|..+++
T Consensus 157 ~~~~~~~~~~l~v~~~~~D---~~~~~---~~-~~fD~I~~~--~vl~~l~~---~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 157 NLQEIAEKENLNIRTGLYD---INSAS---IQ-EEYDFILST--VVLMFLNR---ERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred HHHHHHHHcCCceEEEEec---hhccc---cc-CCccEEEEc--chhhhCCH---HHHHHHHHHHHHhcCCCcEEE
Confidence 5666777778866664432 22211 11 111333333 45778753 3566777776 5699998744
No 16
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.64 E-value=2.4 Score=44.26 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=67.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
..|||+|.|.|.-=..|+++|.. ..++|+|+.+.+- ++.+.++|.+- .-+++ +..|
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-------~~~~~~iDiS~~m-------------L~~a~~~l~~~--~p~~~--v~~i 120 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-------PARYVPIDISADA-------------LKESAAALAAD--YPQLE--VHGI 120 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-------CCeEEEEECCHHH-------------HHHHHHHHHhh--CCCce--EEEE
Confidence 67999999999776677777643 2789999886431 34555555431 12344 3334
Q ss_pred ecCCCCCCcccccc-CCCCCEEEEEeeccccccCCCCCchHHHHHHHHH-hcCCCEEEEEeccC
Q 008559 368 ESHPLQDLSSQMVS-TSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLR-SLEPKGVILSENNM 429 (561)
Q Consensus 368 ~~~~le~L~~~~L~-~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR-~L~PkvVvlvE~ea 429 (561)
.. +..+.. ..+. ...+..+++.+...++++.. .....||+.|+ .|+|....++.-+.
T Consensus 121 ~g-D~~~~~-~~~~~~~~~~~~~~~~gs~~~~~~~---~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 121 CA-DFTQPL-ALPPEPAAGRRLGFFPGSTIGNFTP---EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EE-cccchh-hhhcccccCCeEEEEecccccCCCH---HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 43 222210 0011 11224667776677888753 45667888885 58998777754443
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=92.55 E-value=6 Score=40.49 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=30.9
Q ss_pred hhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 268 IANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 268 tANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-+...|++.+.=.+. -+|+|+|.|.|.- ...|+.+. ..++|+|+..
T Consensus 39 ~~~~~~l~~l~l~~~-----~~VLDiGcG~G~~----a~~la~~~-----~~~v~giD~s 84 (263)
T PTZ00098 39 EATTKILSDIELNEN-----SKVLDIGSGLGGG----CKYINEKY-----GAHVHGVDIC 84 (263)
T ss_pred HHHHHHHHhCCCCCC-----CEEEEEcCCCChh----hHHHHhhc-----CCEEEEEECC
Confidence 445666666654454 7899999999983 23445432 2589999874
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.53 E-value=9.3 Score=39.15 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=109.6
Q ss_pred hhccCCCCCch-hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcC
Q 008559 255 FYDKSPWFAFP-NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQN 333 (561)
Q Consensus 255 f~e~sP~~kfa-hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~ 333 (561)
+=....++.|+ |.+=+++..+.+.-.+- .+|+|.+.|-|- +.-.|+++-| .-+|||++.+..-
T Consensus 24 YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g-----~~vLDva~GTGd----~a~~~~k~~g----~g~v~~~D~s~~M--- 87 (238)
T COG2226 24 YDLMNDLMSFGLHRLWRRALISLLGIKPG-----DKVLDVACGTGD----MALLLAKSVG----TGEVVGLDISESM--- 87 (238)
T ss_pred HHhhcccccCcchHHHHHHHHHhhCCCCC-----CEEEEecCCccH----HHHHHHHhcC----CceEEEEECCHHH---
Confidence 33345566665 34455555555543344 899999999973 3344555543 4899999875321
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHH
Q 008559 334 AETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRV 413 (561)
Q Consensus 334 ~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~ 413 (561)
++... +-++..|+.- +.-|.+ . .+.|...++-.=+|-+.|.||++.+ .+.+|+-
T Consensus 88 ----------L~~a~----~k~~~~~~~~-i~fv~~-d-----Ae~LPf~D~sFD~vt~~fglrnv~d-----~~~aL~E 141 (238)
T COG2226 88 ----------LEVAR----EKLKKKGVQN-VEFVVG-D-----AENLPFPDNSFDAVTISFGLRNVTD-----IDKALKE 141 (238)
T ss_pred ----------HHHHH----HHhhccCccc-eEEEEe-c-----hhhCCCCCCccCEEEeeehhhcCCC-----HHHHHHH
Confidence 22222 2334444332 333333 2 3455667777778899999999874 4666666
Q ss_pred H-HhcCCCEEEEEeccCCCCCCCCCChhhHHHHHHH-HHHH-HHhhhhhhcCCCChHHhhhheeeeecccccccccccCh
Q 008559 414 L-RSLEPKGVILSENNMDCSCGNCGDFATGFARRVE-YLWR-FLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGK 490 (561)
Q Consensus 414 I-R~L~PkvVvlvE~ead~~~~n~~~F~~RF~eaL~-yY~a-lfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~ 490 (561)
+ |=|+|.+.+++-.=.. ...+ -|...++ ||.. ++=.+. .+...+.++..-+. +-+ +++-..
T Consensus 142 ~~RVlKpgG~~~vle~~~---p~~~----~~~~~~~~~~~~~v~P~~g-~~~~~~~~~y~yL~-------eSi-~~~p~~ 205 (238)
T COG2226 142 MYRVLKPGGRLLVLEFSK---PDNP----VLRKAYILYYFKYVLPLIG-KLVAKDAEAYEYLA-------ESI-RRFPDQ 205 (238)
T ss_pred HHHhhcCCeEEEEEEcCC---CCch----hhHHHHHHHHHHhHhhhhc-eeeecChHHHHHHH-------HHH-HhCCCH
Confidence 5 5599999776644333 3333 3344444 5555 554444 22222333332221 112 455566
Q ss_pred HHHHHHHhcCCCcccc
Q 008559 491 DKWCDRMRGVGFVGDV 506 (561)
Q Consensus 491 ~~Wr~Rm~~AGF~~vp 506 (561)
+.=.+.|..+||..+.
T Consensus 206 ~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 206 EELKQMIEKAGFEEVR 221 (238)
T ss_pred HHHHHHHHhcCceEEe
Confidence 6777778889998764
No 19
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.40 E-value=9.5 Score=37.05 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=23.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
.+|+|+|.|.|. +...++.+ +|+ ..++|+++..
T Consensus 53 ~~vldiG~G~G~----~~~~l~~~--~~~-~~~v~~~D~s 85 (239)
T PRK00216 53 DKVLDLACGTGD----LAIALAKA--VGK-TGEVVGLDFS 85 (239)
T ss_pred CeEEEeCCCCCH----HHHHHHHH--cCC-CCeEEEEeCC
Confidence 789999999985 33344443 233 6899999874
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.99 E-value=2 Score=41.87 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=62.5
Q ss_pred hhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHH
Q 008559 269 ANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYS 348 (561)
Q Consensus 269 ANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg 348 (561)
+.+.+++.+..... -.|+|+|.|.|. +.-.||.+ | .+||||+.+.. .-
T Consensus 18 ~~~~l~~~l~~~~~-----~~vLDiGcG~G~----~a~~La~~--g----~~V~gvD~S~~-----------------~i 65 (197)
T PRK11207 18 THSEVLEAVKVVKP-----GKTLDLGCGNGR----NSLYLAAN--G----FDVTAWDKNPM-----------------SI 65 (197)
T ss_pred ChHHHHHhcccCCC-----CcEEEECCCCCH----HHHHHHHC--C----CEEEEEeCCHH-----------------HH
Confidence 34456666654444 689999999997 33446655 2 48999987532 22
Q ss_pred HHHHHHHHhcCce-EEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEE
Q 008559 349 LQLLGFAKSMNIN-LQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILS 425 (561)
Q Consensus 349 ~rL~~fA~~lgVp-FeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlv 425 (561)
+.+.+.++..++. .++... ++.++.. . ..=+.|+.+ +.+|++.. ..+..+++.+ +.|+|..++++
T Consensus 66 ~~a~~~~~~~~~~~v~~~~~---d~~~~~~---~-~~fD~I~~~--~~~~~~~~---~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 66 ANLERIKAAENLDNLHTAVV---DLNNLTF---D-GEYDFILST--VVLMFLEA---KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHcCCCcceEEec---ChhhCCc---C-CCcCEEEEe--cchhhCCH---HHHHHHHHHHHHHcCCCcEEEE
Confidence 3333334444553 333322 3333321 1 112344433 45677653 3566777766 66999997543
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.89 E-value=5 Score=36.30 Aligned_cols=94 Identities=27% Similarity=0.368 Sum_probs=53.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-.|+|||.|.| . ++..|+.+ | .++||++..... ... ..+.+.-...
T Consensus 24 ~~vLDiGcG~G-~---~~~~l~~~--~----~~~~g~D~~~~~----------------~~~--------~~~~~~~~~~ 69 (161)
T PF13489_consen 24 KRVLDIGCGTG-S---FLRALAKR--G----FEVTGVDISPQM----------------IEK--------RNVVFDNFDA 69 (161)
T ss_dssp SEEEEESSTTS-H---HHHHHHHT--T----SEEEEEESSHHH----------------HHH--------TTSEEEEEEC
T ss_pred CEEEEEcCCCC-H---HHHHHHHh--C----CEEEEEECCHHH----------------Hhh--------hhhhhhhhhh
Confidence 79999999999 3 55566655 2 399999875321 111 2222222211
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEE-eccCC
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILS-ENNMD 430 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlv-E~ead 430 (561)
. .....++-.=+|-|...|||+.+ + ..+|+.| +.|+|..++++ +....
T Consensus 70 ~----------~~~~~~~~fD~i~~~~~l~~~~d----~-~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 70 Q----------DPPFPDGSFDLIICNDVLEHLPD----P-EEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp H----------THHCHSSSEEEEEEESSGGGSSH----H-HHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred h----------hhhccccchhhHhhHHHHhhccc----H-HHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 1 11123344545556688999973 4 4566655 55899866665 44444
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=90.16 E-value=4.6 Score=42.95 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce--EEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN--LQIN 365 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp--FeF~ 365 (561)
-+|+|+|.|.|. +...|+.+- | .++|||+... +.-.+..+.++..|+. .+|.
T Consensus 120 ~~VLDiGCG~G~----~~~~La~~~-g----~~v~gvD~s~-----------------~~i~~a~~~~~~~g~~~~v~~~ 173 (340)
T PLN02244 120 KRIVDVGCGIGG----SSRYLARKY-G----ANVKGITLSP-----------------VQAARANALAAAQGLSDKVSFQ 173 (340)
T ss_pred CeEEEecCCCCH----HHHHHHHhc-C----CEEEEEECCH-----------------HHHHHHHHHHHhcCCCCceEEE
Confidence 689999999995 556677654 2 4899998642 1223344445555553 4443
Q ss_pred EEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHH-HHHhcCCCEEEEE
Q 008559 366 RLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLR-VLRSLEPKGVILS 425 (561)
Q Consensus 366 ~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~-~IR~L~PkvVvlv 425 (561)
.- +..++ ...++..=+|-|...+||+.+ . ..+|+ ..|-|+|...+++
T Consensus 174 ~~---D~~~~-----~~~~~~FD~V~s~~~~~h~~d----~-~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 174 VA---DALNQ-----PFEDGQFDLVWSMESGEHMPD----K-RKFVQELARVAAPGGRIII 221 (340)
T ss_pred Ec---CcccC-----CCCCCCccEEEECCchhccCC----H-HHHHHHHHHHcCCCcEEEE
Confidence 32 22222 223343334556677889864 3 34554 4577999866554
No 23
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.79 E-value=0.9 Score=38.96 Aligned_cols=97 Identities=26% Similarity=0.378 Sum_probs=52.9
Q ss_pred EEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEec
Q 008559 290 ILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLES 369 (561)
Q Consensus 290 IIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~ 369 (561)
|+|+|.|.|.-=..|.+.+ . .| | ..+++||+.... +-....+..+..+++.+| +..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~-~-~~~~~gvD~s~~-----------------~l~~~~~~~~~~~~~~~~--~~~ 56 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AG-P-SSRVIGVDISPE-----------------MLELAKKRFSEDGPKVRF--VQA 56 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEEEES-HH-----------------HHHHHHHHSHHTTTTSEE--EES
T ss_pred CEEeecCCcHHHHHHHHHh-h--hc-c-cceEEEEECCHH-----------------HHHHHHHhchhcCCceEE--EEC
Confidence 7999999998777777766 2 23 3 489999987532 223333344445566666 333
Q ss_pred CCCCCCccccccCCCCCE-EEEEeeccccccCCCCCchHHHHHHHHHh-cCC
Q 008559 370 HPLQDLSSQMVSTSPEET-LIVCTQFRLHHLNHSTPDERTEFLRVLRS-LEP 419 (561)
Q Consensus 370 ~~le~L~~~~L~~~~~Ea-LaVN~~f~LH~L~~es~~~r~~~L~~IR~-L~P 419 (561)
.+.++. ...+.. +||++...+||+.+ ..+..+|+.+.+ |+|
T Consensus 57 -D~~~l~-----~~~~~~D~v~~~~~~~~~~~~---~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 57 -DARDLP-----FSDGKFDLVVCSGLSLHHLSP---EELEALLRRIARLLRP 99 (101)
T ss_dssp -CTTCHH-----HHSSSEEEEEE-TTGGGGSSH---HHHHHHHHHHHHTEEE
T ss_pred -CHhHCc-----ccCCCeeEEEEcCCccCCCCH---HHHHHHHHHHHHHhCC
Confidence 333332 223333 44443444888754 467778877654 455
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.77 E-value=1.4 Score=37.83 Aligned_cols=105 Identities=23% Similarity=0.217 Sum_probs=57.9
Q ss_pred eEEEEccccCCCchHHHHHHHHh-CCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTR-RSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~-R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~ 366 (561)
=+|+|+|.|.|. +...|++ ++ -.++|||+..... ++...+++.+... +-..+|..
T Consensus 3 ~~vLDlGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~-------------~~~a~~~~~~~~~--~~~i~~~~ 58 (112)
T PF12847_consen 3 GRVLDLGCGTGR----LSIALARLFP-----GARVVGVDISPEM-------------LEIARERAAEEGL--SDRITFVQ 58 (112)
T ss_dssp CEEEEETTTTSH----HHHHHHHHHT-----TSEEEEEESSHHH-------------HHHHHHHHHHTTT--TTTEEEEE
T ss_pred CEEEEEcCcCCH----HHHHHHhcCC-----CCEEEEEeCCHHH-------------HHHHHHHHHhcCC--CCCeEEEE
Confidence 468999999984 3444444 33 4789999875321 2334444423222 23333332
Q ss_pred EecCCCCCCccccccCC-CCCEEEEEeeccccccCCCCCchHHHHHHHHH-hcCCCEEEEEe
Q 008559 367 LESHPLQDLSSQMVSTS-PEETLIVCTQFRLHHLNHSTPDERTEFLRVLR-SLEPKGVILSE 426 (561)
Q Consensus 367 V~~~~le~L~~~~L~~~-~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR-~L~PkvVvlvE 426 (561)
. .+ ....... +=++++.+. +.+|++.+. ..+..+|+.++ .|+|..+++++
T Consensus 59 --~-d~----~~~~~~~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 59 --G-DA----EFDPDFLEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp --S-CC----HGGTTTSSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --C-cc----ccCcccCCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22 1111111 123555555 567766643 45677888764 69999888875
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.59 E-value=2.3 Score=44.03 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=78.3
Q ss_pred chhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCC
Q 008559 264 FPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPP 343 (561)
Q Consensus 264 fahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~ 343 (561)
-+++.+-..||+.+...-. +-+.-+|+|||.|-|. .+.-+...-+ ....+|.|+.+..
T Consensus 12 p~~YA~~~~vl~El~~r~p-~f~P~~vLD~GsGpGt---a~wAa~~~~~----~~~~~~~vd~s~~-------------- 69 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLP-DFRPRSVLDFGSGPGT---ALWAAREVWP----SLKEYTCVDRSPE-------------- 69 (274)
T ss_pred hHHHHHHHHHHHHHHHhCc-CCCCceEEEecCChHH---HHHHHHHHhc----CceeeeeecCCHH--------------
Confidence 3577788888888864322 2334699999999883 2221111111 2578999987532
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEE
Q 008559 344 GDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGV 422 (561)
Q Consensus 344 l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvV 422 (561)
..+.+++|.+-...... .+.. ..+..+.+.+.+.+.|++. +.|-.|.+ ..|..+++.+ ..+++ ++
T Consensus 70 ~~~l~~~l~~~~~~~~~-~~~~-------~~~~~~~~~~~~~DLvi~s--~~L~EL~~---~~r~~lv~~LW~~~~~-~L 135 (274)
T PF09243_consen 70 MLELAKRLLRAGPNNRN-AEWR-------RVLYRDFLPFPPDDLVIAS--YVLNELPS---AARAELVRSLWNKTAP-VL 135 (274)
T ss_pred HHHHHHHHHhccccccc-chhh-------hhhhcccccCCCCcEEEEe--hhhhcCCc---hHHHHHHHHHHHhccC-cE
Confidence 45677777653321110 0010 1111222334344444433 44445553 4678888887 55666 88
Q ss_pred EEEeccCCCCCCCCCChhhHHHHHH
Q 008559 423 ILSENNMDCSCGNCGDFATGFARRV 447 (561)
Q Consensus 423 vlvE~ead~~~~n~~~F~~RF~eaL 447 (561)
|++|..-- .+..++.+.++.|
T Consensus 136 VlVEpGt~----~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 136 VLVEPGTP----AGFRRIAEARDQL 156 (274)
T ss_pred EEEcCCCh----HHHHHHHHHHHHH
Confidence 88888654 4444555555544
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.39 E-value=3.1 Score=41.95 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=62.9
Q ss_pred HHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHH
Q 008559 272 SILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQL 351 (561)
Q Consensus 272 AILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL 351 (561)
.|++.+. ... -+|+|+|.|.|. +...|+.+ | .++|+|+.... .-...
T Consensus 36 ~~l~~l~-~~~-----~~vLDiGcG~G~----~a~~la~~--g----~~v~~vD~s~~-----------------~l~~a 82 (255)
T PRK11036 36 RLLAELP-PRP-----LRVLDAGGGEGQ----TAIKLAEL--G----HQVILCDLSAE-----------------MIQRA 82 (255)
T ss_pred HHHHhcC-CCC-----CEEEEeCCCchH----HHHHHHHc--C----CEEEEEECCHH-----------------HHHHH
Confidence 4666665 233 799999999993 55666765 2 47899987532 22333
Q ss_pred HHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEE
Q 008559 352 LGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILS 425 (561)
Q Consensus 352 ~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlv 425 (561)
.+.++..|+.-.+..+.. +++++.. ..++..=+|-|...|||+.+ +...+-+..+-|+|...+++
T Consensus 83 ~~~~~~~g~~~~v~~~~~-d~~~l~~----~~~~~fD~V~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 83 KQAAEAKGVSDNMQFIHC-AAQDIAQ----HLETPVDLILFHAVLEWVAD----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHHHHhcCCccceEEEEc-CHHHHhh----hcCCCCCEEEehhHHHhhCC----HHHHHHHHHHHcCCCeEEEE
Confidence 344555565433333333 3333321 11222222334566788753 44444455577999988865
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.33 E-value=4.2 Score=44.79 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
..|++.+..... -+|+|+|.|.|. +...|+.+- -+++||+..... ++ ....
T Consensus 27 ~~il~~l~~~~~-----~~vLDlGcG~G~----~~~~la~~~------~~v~giD~s~~~-------------l~-~a~~ 77 (475)
T PLN02336 27 PEILSLLPPYEG-----KSVLELGAGIGR----FTGELAKKA------GQVIALDFIESV-------------IK-KNES 77 (475)
T ss_pred hHHHhhcCccCC-----CEEEEeCCCcCH----HHHHHHhhC------CEEEEEeCCHHH-------------HH-HHHH
Confidence 456666654444 589999999994 444455542 278999864321 11 1111
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHH-hcCCCEEEEEe
Q 008559 351 LLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLR-SLEPKGVILSE 426 (561)
Q Consensus 351 L~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR-~L~PkvVvlvE 426 (561)
... ..-..+|.... +++ ..+...++..=+|-|.+.|||+.+ ..+..+|+.++ -|+|..+++..
T Consensus 78 ---~~~-~~~~i~~~~~d---~~~---~~~~~~~~~fD~I~~~~~l~~l~~---~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 78 ---ING-HYKNVKFMCAD---VTS---PDLNISDGSVDLIFSNWLLMYLSD---KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ---Hhc-cCCceEEEEec---ccc---cccCCCCCCEEEEehhhhHHhCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence 111 11123332222 211 112233333345556678999975 34567777664 49999888764
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=88.21 E-value=4 Score=33.25 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=55.7
Q ss_pred EEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecC
Q 008559 291 LDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESH 370 (561)
Q Consensus 291 IDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~ 370 (561)
+|+|.|.|.....|.+. + -.++|+++... +.-+...+..+..+++ |. ..
T Consensus 1 LdiG~G~G~~~~~l~~~--------~-~~~v~~~D~~~-----------------~~~~~~~~~~~~~~~~--~~--~~- 49 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------G-GASVTGIDISE-----------------EMLEQARKRLKNEGVS--FR--QG- 49 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------T-TCEEEEEES-H-----------------HHHHHHHHHTTTSTEE--EE--ES-
T ss_pred CEecCcCCHHHHHHHhc--------c-CCEEEEEeCCH-----------------HHHHHHHhcccccCch--he--ee-
Confidence 68899988766655554 2 38999998743 2334444445555555 22 21
Q ss_pred CCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHH-HHhcCCCEEEEE
Q 008559 371 PLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRV-LRSLEPKGVILS 425 (561)
Q Consensus 371 ~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~-IR~L~PkvVvlv 425 (561)
+ ...+...++..=+|-+...+||+. .+..+|+- .|-|+|..+.+.
T Consensus 50 d-----~~~l~~~~~sfD~v~~~~~~~~~~-----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 50 D-----AEDLPFPDNSFDVVFSNSVLHHLE-----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp B-----TTSSSS-TT-EEEEEEESHGGGSS-----HHHHHHHHHHHHEEEEEEEEE
T ss_pred h-----HHhCccccccccccccccceeecc-----CHHHHHHHHHHHcCcCeEEeC
Confidence 2 234455666666777788899982 34455555 466999887653
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=88.17 E-value=6.4 Score=39.46 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=61.6
Q ss_pred hHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHH
Q 008559 270 NSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSL 349 (561)
Q Consensus 270 NqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~ 349 (561)
+..|++.+.-.+. -+|+|+|.|.| .+...|+.+- | ..+++||+....
T Consensus 20 ~~~ll~~~~~~~~-----~~vLDiGcG~G----~~~~~la~~~---~-~~~v~gvD~s~~-------------------- 66 (258)
T PRK01683 20 ARDLLARVPLENP-----RYVVDLGCGPG----NSTELLVERW---P-AARITGIDSSPA-------------------- 66 (258)
T ss_pred HHHHHhhCCCcCC-----CEEEEEcccCC----HHHHHHHHHC---C-CCEEEEEECCHH--------------------
Confidence 4566666654444 78999999998 3345666653 2 368999987431
Q ss_pred HHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEec
Q 008559 350 QLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSEN 427 (561)
Q Consensus 350 rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ 427 (561)
+.+.|+..--..+|... +++++.+. ..=+.| -|.+.||++.+ +...+-+..+.|+|...+++..
T Consensus 67 -~i~~a~~~~~~~~~~~~---d~~~~~~~----~~fD~v--~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 67 -MLAEARSRLPDCQFVEA---DIASWQPP----QALDLI--FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -HHHHHHHhCCCCeEEEC---chhccCCC----CCccEE--EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEEC
Confidence 22223222112333322 22222111 111233 34567788864 4444555557799999888764
No 30
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=88.16 E-value=1.5 Score=46.73 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=75.5
Q ss_pred hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHH
Q 008559 266 NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGD 345 (561)
Q Consensus 266 hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~ 345 (561)
+.+-..-|-+.+..... +....+|+|+|+|.|.= |.+-... + -=++.||+...+ .++
T Consensus 43 NwvKs~LI~~~~~~~~~-~~~~~~VLDl~CGkGGD---L~Kw~~~---~---i~~~vg~Dis~~-------------si~ 99 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQ-NRPGLTVLDLCCGKGGD---LQKWQKA---K---IKHYVGIDISEE-------------SIE 99 (331)
T ss_dssp HHHHHHHHHHHCHCCCC-TTTT-EEEEET-TTTTT---HHHHHHT---T----SEEEEEES-HH-------------HHH
T ss_pred HHHHHHHHHHHHHhhhc-cCCCCeEEEecCCCchh---HHHHHhc---C---CCEEEEEeCCHH-------------HHH
Confidence 44455556666553322 23459999999999952 1111111 2 256788988654 378
Q ss_pred HHHHHHHHHHHhc---CceEEEEEEecCCCCCCccc---cccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcC
Q 008559 346 NYSLQLLGFAKSM---NINLQINRLESHPLQDLSSQ---MVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLE 418 (561)
Q Consensus 346 etg~rL~~fA~~l---gVpFeF~~V~~~~le~L~~~---~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~ 418 (561)
++.+|..+.-+.. ...+.|.+... ..+.+... .+.......=+|+|+|.||+.-. +......+|+.| ..|+
T Consensus 100 ea~~Ry~~~~~~~~~~~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe-se~~ar~~l~Nvs~~Lk 177 (331)
T PF03291_consen 100 EARERYKQLKKRNNSKQYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSCQFALHYAFE-SEEKARQFLKNVSSLLK 177 (331)
T ss_dssp HHHHHHHHHHTSTT-HTSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS-SHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHhccccccccccccchhhee-ccccccchhhhhccccCCCcceeehHHHHHHhcC-CHHHHHHHHHHHHHhcC
Confidence 8888886555332 23333333221 11222211 12222347789999999999875 333344566665 6799
Q ss_pred CCEEEEE-eccCC
Q 008559 419 PKGVILS-ENNMD 430 (561)
Q Consensus 419 PkvVvlv-E~ead 430 (561)
|..+.++ -.+++
T Consensus 178 ~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 178 PGGYFIGTTPDSD 190 (331)
T ss_dssp EEEEEEEEEE-HH
T ss_pred CCCEEEEEecCHH
Confidence 9987774 56655
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=87.80 E-value=27 Score=33.70 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 269 ANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 269 ANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
....+++.+.... .....+|+|+|.|.|. +...|+.+ + | ..++|+|+..
T Consensus 19 ~~~~l~~~~~~~~--~~~~~~vLDlG~G~G~----~~~~l~~~--~-~-~~~~~~~D~~ 67 (240)
T TIGR02072 19 MAKRLLALLKEKG--IFIPASVLDIGCGTGY----LTRALLKR--F-P-QAEFIALDIS 67 (240)
T ss_pred HHHHHHHHhhhhc--cCCCCeEEEECCCccH----HHHHHHHh--C-C-CCcEEEEeCh
Confidence 3344555554321 0122789999999995 34444544 3 2 4789999874
No 32
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=86.63 E-value=27 Score=34.37 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.0
Q ss_pred ccChHHHHHHHhcCCCccccC
Q 008559 487 NEGKDKWCDRMRGVGFVGDVF 507 (561)
Q Consensus 487 ~E~~~~Wr~Rm~~AGF~~vpl 507 (561)
.=+.+.|...+..+||..+.+
T Consensus 183 ~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 183 FIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred cCCHHHHHHHHHHCCCeEeee
Confidence 335678999999999998854
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=83.58 E-value=19 Score=35.95 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=29.8
Q ss_pred hhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 268 IANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 268 tANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
..-..+++.+..... -+|+|+|.|.|. +.+.|+.+ | -++++|+..
T Consensus 29 ~~a~~l~~~l~~~~~-----~~vLDiGcG~G~----~~~~l~~~--~----~~v~~~D~s 73 (251)
T PRK10258 29 QSADALLAMLPQRKF-----THVLDAGCGPGW----MSRYWRER--G----SQVTALDLS 73 (251)
T ss_pred HHHHHHHHhcCccCC-----CeEEEeeCCCCH----HHHHHHHc--C----CeEEEEECC
Confidence 344455666654333 579999999993 56667654 2 478999864
No 34
>PRK05785 hypothetical protein; Provisional
Probab=81.89 E-value=37 Score=33.97 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=50.5
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-.|+|+|.|.|.- ...|+.+- + .+||||+.+.. ..+.|+.-. . + +
T Consensus 53 ~~VLDlGcGtG~~----~~~l~~~~-~----~~v~gvD~S~~---------------------Ml~~a~~~~-~--~--~ 97 (226)
T PRK05785 53 KKVLDVAAGKGEL----SYHFKKVF-K----YYVVALDYAEN---------------------MLKMNLVAD-D--K--V 97 (226)
T ss_pred CeEEEEcCCCCHH----HHHHHHhc-C----CEEEEECCCHH---------------------HHHHHHhcc-c--e--E
Confidence 5799999999943 34555553 1 58999987432 122232211 1 1 2
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEE
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVIL 424 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvl 424 (561)
.. ..++ +...++..=+|-|.|.|||+.+ ...+|+-+ |-|+|.++++
T Consensus 98 ~~-d~~~-----lp~~d~sfD~v~~~~~l~~~~d-----~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 98 VG-SFEA-----LPFRDKSFDVVMSSFALHASDN-----IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred Ee-chhh-----CCCCCCCEEEEEecChhhccCC-----HHHHHHHHHHHhcCceEEE
Confidence 22 2332 3344554555666678888754 34455555 5688954443
No 35
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=81.88 E-value=18 Score=35.77 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=27.2
Q ss_pred EEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEeccCC
Q 008559 390 VCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMD 430 (561)
Q Consensus 390 VN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ead 430 (561)
|-|...|||+. ++.+..+++.+.+..=+.++++|....
T Consensus 109 V~~~~vL~hl~---p~~~~~~l~el~r~~~~~v~i~e~~~~ 146 (204)
T TIGR03587 109 VLTKGVLIHIN---PDNLPTAYRELYRCSNRYILIAEYYNP 146 (204)
T ss_pred EEECChhhhCC---HHHHHHHHHHHHhhcCcEEEEEEeeCC
Confidence 33556678874 346778888888877788888887554
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=81.32 E-value=20 Score=35.13 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=33.8
Q ss_pred hHhhhHHHHHHHhc--CccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 266 NNIANSSILQILAQ--DRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 266 hftANqAILEA~~g--~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
+-.....+++.+.. .+. -+|+|+|.|.|. +...|+.+ + .+||||+...
T Consensus 38 ~~~~~~~~~~~l~~~~~~~-----~~vLDiGcG~G~----~~~~la~~--~----~~v~gvD~s~ 87 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKG-----KRVLDAGCGTGL----LSIELAKR--G----AIVKAVDISE 87 (219)
T ss_pred HHHHHHHHHHHHhcCCCCC-----CEEEEEeCCCCH----HHHHHHHC--C----CEEEEEECCH
Confidence 55566677777763 233 799999999995 66667765 1 4789998753
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=81.17 E-value=10 Score=36.68 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=54.7
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-+|+|+|.|.|.- ++ .|+.+. | ..++|+|+.... .-..+.+.++..|++ .+..+
T Consensus 44 ~~vLDiGcGtG~~--s~--~la~~~---~-~~~V~~iD~s~~-----------------~~~~a~~~~~~~~~~-~i~~i 97 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GI--PLAIAR---P-ELKLTLLESNHK-----------------KVAFLREVKAELGLN-NVEIV 97 (181)
T ss_pred CeEEEecCCCCcc--HH--HHHHHC---C-CCeEEEEeCcHH-----------------HHHHHHHHHHHhCCC-CeEEE
Confidence 6899999999932 22 222221 2 478999987532 223444555666764 23334
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEEeccC
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILSENNM 429 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlvE~ea 429 (561)
.. +++++.. ...=+.|+.|+ +|++ ..+++.+ +-|+|..+++++...
T Consensus 98 ~~-d~~~~~~----~~~fD~I~s~~---~~~~--------~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 98 NG-RAEDFQH----EEQFDVITSRA---LASL--------NVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred ec-chhhccc----cCCccEEEehh---hhCH--------HHHHHHHHHhcCCCCEEEEEcCC
Confidence 43 3444321 11224555554 3332 3455554 448999998877433
No 38
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=80.83 E-value=9.1 Score=40.76 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=56.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCc--eEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNI--NLQIN 365 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgV--pFeF~ 365 (561)
..|+|+|.|.|. +...|+.+ | .++|||+..... ++ ..+ +.++..++ .++|.
T Consensus 133 ~~ILDIGCG~G~----~s~~La~~-g-----~~V~GID~s~~~-------------i~-~Ar---~~~~~~~~~~~i~~~ 185 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLARM-G-----ATVTGVDAVDKN-------------VK-IAR---LHADMDPVTSTIEYL 185 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHHc-C-----CEEEEEeCCHHH-------------HH-HHH---HHHHhcCcccceeEE
Confidence 689999999998 55677753 2 479999875321 11 111 11222222 33333
Q ss_pred EEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHH-hcCCCEEEEEe
Q 008559 366 RLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLR-SLEPKGVILSE 426 (561)
Q Consensus 366 ~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR-~L~PkvVvlvE 426 (561)
.- +.+++. ..++..=+|-|...|||+.+ + ..||+.++ -|+|...+++.
T Consensus 186 ~~---dae~l~-----~~~~~FD~Vi~~~vLeHv~d----~-~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 186 CT---TAEKLA-----DEGRKFDAVLSLEVIEHVAN----P-AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred ec---CHHHhh-----hccCCCCEEEEhhHHHhcCC----H-HHHHHHHHHHcCCCcEEEEE
Confidence 32 223332 22233335555678899875 3 46777764 48999888765
No 39
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=80.52 E-value=20 Score=38.01 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=57.3
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHH-Hhc-CceEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFA-KSM-NINLQIN 365 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA-~~l-gVpFeF~ 365 (561)
..|+|+|.|.|. +...|+.+ | .+||||+.+..- ++...++..+.- ... +...+|.
T Consensus 146 ~~VLDlGcGtG~----~a~~la~~--g----~~V~gvD~S~~m-------------l~~A~~~~~~~~~~~~~~~~~~f~ 202 (315)
T PLN02585 146 VTVCDAGCGTGS----LAIPLALE--G----AIVSASDISAAM-------------VAEAERRAKEALAALPPEVLPKFE 202 (315)
T ss_pred CEEEEecCCCCH----HHHHHHHC--C----CEEEEEECCHHH-------------HHHHHHHHHhcccccccccceEEE
Confidence 689999999987 45566654 2 489999875421 233333322110 000 2334554
Q ss_pred EEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEE
Q 008559 366 RLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILS 425 (561)
Q Consensus 366 ~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlv 425 (561)
.. ++++++ -.- + +| -|...|||+.+ +....+++.++++.|..+++.
T Consensus 203 ~~---Dl~~l~-----~~f-D-~V-v~~~vL~H~p~---~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 203 AN---DLESLS-----GKY-D-TV-TCLDVLIHYPQ---DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred Ec---chhhcC-----CCc-C-EE-EEcCEEEecCH---HHHHHHHHHHHhhcCCEEEEE
Confidence 43 233331 111 2 33 35566778765 345678888888888888774
No 40
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=79.97 E-value=11 Score=37.38 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
..++++..=... -+|||+|-|.| .+..+|+.+- | .||+|.++.|..- +....
T Consensus 90 ~~~~~~~d~~~~-----~~vvDvGGG~G----~~~~~l~~~~---P-~l~~~v~Dlp~v~---------------~~~~~ 141 (241)
T PF00891_consen 90 DILLEAFDFSGF-----KTVVDVGGGSG----HFAIALARAY---P-NLRATVFDLPEVI---------------EQAKE 141 (241)
T ss_dssp HHHHHHSTTTTS-----SEEEEET-TTS----HHHHHHHHHS---T-TSEEEEEE-HHHH---------------CCHHH
T ss_pred hhhhccccccCc-----cEEEeccCcch----HHHHHHHHHC---C-CCcceeeccHhhh---------------hcccc
Confidence 344555543333 58999999999 4556666654 4 7999999886421 11122
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCC---EEEEEe
Q 008559 351 LLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPK---GVILSE 426 (561)
Q Consensus 351 L~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~Pk---vVvlvE 426 (561)
.=.++|.+-.- + +.+.. .+ +|-+-.-||+..++ ....+|+.+ +.|.|. .++++|
T Consensus 142 --------~~rv~~~~gd~-----f--~~~P~--~D--~~~l~~vLh~~~d~---~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 142 --------ADRVEFVPGDF-----F--DPLPV--AD--VYLLRHVLHDWSDE---DCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp --------TTTEEEEES-T-----T--TCCSS--ES--EEEEESSGGGS-HH---HHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred --------ccccccccccH-----H--hhhcc--cc--ceeeehhhhhcchH---HHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 22233333221 1 22222 23 44445568887763 455677776 558987 666677
Q ss_pred ccCC
Q 008559 427 NNMD 430 (561)
Q Consensus 427 ~ead 430 (561)
.-.+
T Consensus 200 ~~~~ 203 (241)
T PF00891_consen 200 MVLP 203 (241)
T ss_dssp EEEC
T ss_pred eccC
Confidence 7665
No 41
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=79.14 E-value=5.3 Score=41.04 Aligned_cols=98 Identities=26% Similarity=0.373 Sum_probs=65.0
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
+-|+|+|.|-| .|-+.||+. | ..+|||+..... ++ -=...|..-|+..+|...
T Consensus 61 ~~vLDvGCGgG----~Lse~mAr~--G----a~VtgiD~se~~-------------I~----~Ak~ha~e~gv~i~y~~~ 113 (243)
T COG2227 61 LRVLDVGCGGG----ILSEPLARL--G----ASVTGIDASEKP-------------IE----VAKLHALESGVNIDYRQA 113 (243)
T ss_pred CeEEEecCCcc----HhhHHHHHC--C----CeeEEecCChHH-------------HH----HHHHhhhhccccccchhh
Confidence 88999999999 788888886 3 789999874321 11 112345566888777776
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHH-HHhcCCCEEEEE
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRV-LRSLEPKGVILS 425 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~-IR~L~PkvVvlv 425 (561)
.. |+|... -+-.=||-|+=-|+|+.+ |.. |++. .+-++|..+++.
T Consensus 114 ~~---edl~~~-----~~~FDvV~cmEVlEHv~d----p~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 114 TV---EDLASA-----GGQFDVVTCMEVLEHVPD----PES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred hH---HHHHhc-----CCCccEEEEhhHHHccCC----HHH-HHHHHHHHcCCCcEEEE
Confidence 54 333222 134446778888999875 444 5555 566899877763
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=78.20 E-value=16 Score=36.18 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=70.8
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
..|++|+.--+. -.++|+|.|.|.= ---||++ | ..+|+|+.+.. .-++
T Consensus 20 s~v~~a~~~~~~-----g~~LDlgcG~GRN----alyLA~~--G----~~VtAvD~s~~-----------------al~~ 67 (192)
T PF03848_consen 20 SEVLEAVPLLKP-----GKALDLGCGEGRN----ALYLASQ--G----FDVTAVDISPV-----------------ALEK 67 (192)
T ss_dssp HHHHHHCTTS-S-----SEEEEES-TTSHH----HHHHHHT--T-----EEEEEESSHH-----------------HHHH
T ss_pred HHHHHHHhhcCC-----CcEEEcCCCCcHH----HHHHHHC--C----CeEEEEECCHH-----------------HHHH
Confidence 457777765555 7899999999852 1246665 3 78999987532 3467
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHh-cCCCEEEEEe
Q 008559 351 LLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRS-LEPKGVILSE 426 (561)
Q Consensus 351 L~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~-L~PkvVvlvE 426 (561)
|.+.|+.-+++++..... +++.. +. ++.=+|.+...+++|.. ..++.+++.|++ ++|..+.+.+
T Consensus 68 l~~~a~~~~l~i~~~~~D---l~~~~-----~~-~~yD~I~st~v~~fL~~---~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 68 LQRLAEEEGLDIRTRVAD---LNDFD-----FP-EEYDFIVSTVVFMFLQR---ELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp HHHHHHHTT-TEEEEE-B---GCCBS------T-TTEEEEEEESSGGGS-G---GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcCceeEEEEec---chhcc-----cc-CCcCEEEEEEEeccCCH---HHHHHHHHHHHhhcCCcEEEEEE
Confidence 899999999997666553 33322 22 33445556667788864 467888888765 8998776653
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=77.85 E-value=68 Score=33.98 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred HHHHhhccCCCCCchhHhh-------------hHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCC
Q 008559 251 SLLNFYDKSPWFAFPNNIA-------------NSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPP 317 (561)
Q Consensus 251 A~~~f~e~sP~~kfahftA-------------NqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~ 317 (561)
-+..+..+.||.+-.+..- -+.|+..+..-+. -+|+|+|.|.|. ++..++.+ |+
T Consensus 79 l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g-----~~VLDIGCG~G~----~~~~la~~--g~-- 145 (322)
T PRK15068 79 IENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKG-----RTVLDVGCGNGY----HMWRMLGA--GA-- 145 (322)
T ss_pred HHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCC-----CEEEEeccCCcH----HHHHHHHc--CC--
Confidence 4455566677755544331 2233444432222 579999999984 33355554 32
Q ss_pred ceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeecccc
Q 008559 318 LVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLH 397 (561)
Q Consensus 318 ~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH 397 (561)
-+++||+++... + .-.+.+.+++.. ..+.+|... .++++.. ++-.=+|-|+..||
T Consensus 146 -~~V~GiD~S~~~-------------l-~q~~a~~~~~~~-~~~i~~~~~---d~e~lp~------~~~FD~V~s~~vl~ 200 (322)
T PRK15068 146 -KLVVGIDPSQLF-------------L-CQFEAVRKLLGN-DQRAHLLPL---GIEQLPA------LKAFDTVFSMGVLY 200 (322)
T ss_pred -CEEEEEcCCHHH-------------H-HHHHHHHHhcCC-CCCeEEEeC---CHHHCCC------cCCcCEEEECChhh
Confidence 258999864310 0 000111222211 223444332 3343321 12111233444578
Q ss_pred ccCCCCCchHHHHHHHHHhcCCCEEEEEe
Q 008559 398 HLNHSTPDERTEFLRVLRSLEPKGVILSE 426 (561)
Q Consensus 398 ~L~~es~~~r~~~L~~IR~L~PkvVvlvE 426 (561)
|+. ++...+-+..+.|+|...++.+
T Consensus 201 H~~----dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HRR----SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ccC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 875 3666555666779999877765
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=76.07 E-value=13 Score=38.64 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=60.8
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
=||+|+|.| |=.++..+|++- | .++|||..+. +--+...+.++..|++=....+
T Consensus 64 ~~vLDiGcG----wG~~~~~~a~~~-g----~~v~gitlS~-----------------~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 64 DRVLDIGCG----WGGLAIYAAERY-G----CHVTGITLSE-----------------EQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp -EEEEES-T----TSHHHHHHHHHH-------EEEEEES-H-----------------HHHHHHHHHHHCSTSSSTEEEE
T ss_pred CEEEEeCCC----ccHHHHHHHHHc-C----cEEEEEECCH-----------------HHHHHHHHHHHhcCCCCceEEE
Confidence 699999887 567888999986 2 7899998642 2234455667778877444333
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHH-hcCCCEEEEEecc
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLR-SLEPKGVILSENN 428 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR-~L~PkvVvlvE~e 428 (561)
.. ...++.. .= +. |-++-.+.|+.. .....|++.+. -|+|....++..-
T Consensus 118 ~~-D~~~~~~-----~f-D~--IvSi~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 118 LQ-DYRDLPG-----KF-DR--IVSIEMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp ES--GGG--------S--SE--EEEESEGGGTCG---GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred Ee-eccccCC-----CC-CE--EEEEechhhcCh---hHHHHHHHHHHHhcCCCcEEEEEec
Confidence 33 3333322 22 23 222334667753 35778888885 5999988877543
No 45
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=76.01 E-value=29 Score=36.94 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=52.8
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-+|+|+|.|.|. ++..++.+ |+ -+++||+++.. .....+...+++.. .-...+...
T Consensus 123 ~~VLDvGCG~G~----~~~~~~~~--g~---~~v~GiDpS~~--------------ml~q~~~~~~~~~~-~~~v~~~~~ 178 (314)
T TIGR00452 123 RTILDVGCGSGY----HMWRMLGH--GA---KSLVGIDPTVL--------------FLCQFEAVRKLLDN-DKRAILEPL 178 (314)
T ss_pred CEEEEeccCCcH----HHHHHHHc--CC---CEEEEEcCCHH--------------HHHHHHHHHHHhcc-CCCeEEEEC
Confidence 589999999996 44455544 32 37899987532 11111122222211 112233222
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEe
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSE 426 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE 426 (561)
.++++... +..=+|-|+..|||+. ++.+.+-..-+.|+|...++.+
T Consensus 179 ---~ie~lp~~------~~FD~V~s~gvL~H~~----dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 ---GIEQLHEL------YAFDTVFSMGVLYHRK----SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---CHHHCCCC------CCcCEEEEcchhhccC----CHHHHHHHHHHhcCCCCEEEEE
Confidence 33444321 1122333445678875 4655555555679999777764
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=74.94 E-value=29 Score=37.78 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=23.0
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
-+|+|+|.|.|. +...|+.+.+ .++|||+.+.
T Consensus 169 ~rVLDIGcG~G~----~a~~la~~~g-----~~V~giDlS~ 200 (383)
T PRK11705 169 MRVLDIGCGWGG----LARYAAEHYG-----VSVVGVTISA 200 (383)
T ss_pred CEEEEeCCCccH----HHHHHHHHCC-----CEEEEEeCCH
Confidence 589999998774 4555666542 5899998753
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=73.47 E-value=41 Score=32.39 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=22.4
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-+|+|+|.|.|. ++..|+.+. + .+++||+..
T Consensus 15 ~~iLDiGcG~G~----~~~~l~~~~-~----~~~~giD~s 45 (194)
T TIGR02081 15 SRVLDLGCGDGE----LLALLRDEK-Q----VRGYGIEID 45 (194)
T ss_pred CEEEEeCCCCCH----HHHHHHhcc-C----CcEEEEeCC
Confidence 479999999995 567777653 2 456888764
No 48
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.81 E-value=15 Score=37.80 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=30.7
Q ss_pred ceEEEEccccCCCchHHHHHHHHhCCC-CCCCceEEEEecCCCC
Q 008559 287 NLHILDIGVSHGVQWPTLLEALTRRSG-GPPPLVRLTIIAPTAE 329 (561)
Q Consensus 287 ~VHIIDfgI~~G~QWpsLiqaLA~R~g-GpP~~LRITgI~~~~~ 329 (561)
.++|.|.|.+.|--.-+|--.|++.-. ......+|+|++.+..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 499999999999887777666665321 1122589999998643
No 49
>PRK06922 hypothetical protein; Provisional
Probab=72.51 E-value=28 Score=40.80 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=57.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-.|+|+|.|.|. ++..|+.+- | ..++|||+.+..- ++.+..+ +...+.++++ +
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P-~~kVtGIDIS~~M-------------Le~Arar----l~~~g~~ie~--I 472 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---E-DKRIYGIDISENV-------------IDTLKKK----KQNEGRSWNV--I 472 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---C-CCEEEEEECCHHH-------------HHHHHHH----hhhcCCCeEE--E
Confidence 579999999983 456677653 3 4899999875421 2222222 2333554444 3
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCC--------CchHHHHHHHH-HhcCCCEEEEE
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHST--------PDERTEFLRVL-RSLEPKGVILS 425 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es--------~~~r~~~L~~I-R~L~PkvVvlv 425 (561)
.. +..++. .. ..++.+=+|-+.+.+|++.+-. ......+|+.+ +.|+|...+++
T Consensus 473 ~g-Da~dLp-~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 473 KG-DAINLS-SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred Ec-chHhCc-cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 22 222221 00 3344444444566678764211 12334556554 77999866665
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=72.04 E-value=94 Score=30.40 Aligned_cols=97 Identities=13% Similarity=0.234 Sum_probs=56.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF~~ 366 (561)
-.|+|+|.|.|.. + -.++.+. | ..++|+|+.... .-....+.++..+++ ++|..
T Consensus 47 ~~VLDiGcGtG~~--a--l~la~~~---~-~~~V~giD~s~~-----------------~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 47 ERVLDVGSGAGFP--G--IPLAIAR---P-ELKVTLVDSLGK-----------------KIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred CeEEEEcCCCCHH--H--HHHHHHC---C-CCeEEEEeCcHH-----------------HHHHHHHHHHHcCCCCEEEEe
Confidence 6799999999932 2 2233322 2 468999987532 234445556666764 44433
Q ss_pred EecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEEec
Q 008559 367 LESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILSEN 427 (561)
Q Consensus 367 V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlvE~ 427 (561)
- +.+++.. -.+=+.|+.|+. ...+.+++.+ +.|+|...+++..
T Consensus 102 ~---d~~~~~~----~~~fDlV~~~~~-----------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 102 G---RAEEFGQ----EEKFDVVTSRAV-----------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred c---cHhhCCC----CCCccEEEEccc-----------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 3333322 123356666531 1245677664 7899999888774
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=71.77 E-value=82 Score=30.61 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=21.8
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
.+|+|+|.|.|. +...|+.+ + .++|||+.+.
T Consensus 65 ~~vLDvGcG~G~----~~~~l~~~--~----~~v~~~D~s~ 95 (230)
T PRK07580 65 LRILDAGCGVGS----LSIPLARR--G----AKVVASDISP 95 (230)
T ss_pred CEEEEEeCCCCH----HHHHHHHc--C----CEEEEEECCH
Confidence 689999999995 34455544 2 3489998753
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=69.77 E-value=52 Score=34.73 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=62.9
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-||+|||.| |=.|+...|.+- | +++|||+.+.+ --....+-++..|+.=..+.+
T Consensus 74 ~~lLDiGCG----WG~l~~~aA~~y-~----v~V~GvTlS~~-----------------Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 74 MTLLDIGCG----WGGLAIYAAEEY-G----VTVVGVTLSEE-----------------QLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred CEEEEeCCC----hhHHHHHHHHHc-C----CEEEEeeCCHH-----------------HHHHHHHHHHHcCCCcccEEE
Confidence 899999875 568999999986 2 88999987542 223344445666766334444
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHh-cCCCEEEEE
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRS-LEPKGVILS 425 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~-L~PkvVvlv 425 (561)
.. .+.++... -| .|-++=.++|+.. ..-+.|++.+++ |+|+..++.
T Consensus 128 l~-d~rd~~e~-----fD---rIvSvgmfEhvg~---~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 128 LQ-DYRDFEEP-----FD---RIVSVGMFEHVGK---ENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred ec-cccccccc-----cc---eeeehhhHHHhCc---ccHHHHHHHHHhhcCCCceEEE
Confidence 33 45555433 12 2233345677765 346789999876 788866553
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=69.01 E-value=73 Score=34.20 Aligned_cols=121 Identities=22% Similarity=0.315 Sum_probs=67.2
Q ss_pred hhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHH
Q 008559 269 ANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYS 348 (561)
Q Consensus 269 ANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg 348 (561)
....+++.+..... =+|+|||.|.|. |-..|+.+. | ..++|+|+.+... ++.+.
T Consensus 184 gt~lLl~~l~~~~~-----g~VLDlGCG~G~----ls~~la~~~---p-~~~v~~vDis~~A-------------l~~A~ 237 (342)
T PRK09489 184 GSQLLLSTLTPHTK-----GKVLDVGCGAGV----LSAVLARHS---P-KIRLTLSDVSAAA-------------LESSR 237 (342)
T ss_pred HHHHHHHhccccCC-----CeEEEeccCcCH----HHHHHHHhC---C-CCEEEEEECCHHH-------------HHHHH
Confidence 34556666654333 379999999997 445566552 2 4789999875421 23333
Q ss_pred HHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEEec
Q 008559 349 LQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILSEN 427 (561)
Q Consensus 349 ~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlvE~ 427 (561)
+++ +..++..+|..... ++. + -.+=+.|+.|-.| |...+........|++.+ +.|+|........
T Consensus 238 ~nl----~~n~l~~~~~~~D~--~~~-----~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 238 ATL----AANGLEGEVFASNV--FSD-----I-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred HHH----HHcCCCCEEEEccc--ccc-----c-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 333 33456555543221 111 1 1233677777654 443332223345566554 5699998777654
Q ss_pred cC
Q 008559 428 NM 429 (561)
Q Consensus 428 ea 429 (561)
+.
T Consensus 304 n~ 305 (342)
T PRK09489 304 NA 305 (342)
T ss_pred eC
Confidence 43
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.95 E-value=64 Score=32.66 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=51.5
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF~~ 366 (561)
=+|+|+|.|.|.- .. .++... |+ .-+|++|+.... .-+...+.++.++++ .+|
T Consensus 79 ~~VLDiG~G~G~~-~~---~~a~~~-g~--~~~v~gvD~s~~-----------------~l~~A~~~~~~~g~~~v~~-- 132 (272)
T PRK11873 79 ETVLDLGSGGGFD-CF---LAARRV-GP--TGKVIGVDMTPE-----------------MLAKARANARKAGYTNVEF-- 132 (272)
T ss_pred CEEEEeCCCCCHH-HH---HHHHHh-CC--CCEEEEECCCHH-----------------HHHHHHHHHHHcCCCCEEE--
Confidence 5899999999742 21 222222 22 468999987432 122222333445543 232
Q ss_pred EecCCCCCCccccccCCCC--CEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEE
Q 008559 367 LESHPLQDLSSQMVSTSPE--ETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILS 425 (561)
Q Consensus 367 V~~~~le~L~~~~L~~~~~--EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlv 425 (561)
+.. .++++. +.++ +.|+.|++ +|++.+ ....|=...|-|+|...+++
T Consensus 133 ~~~-d~~~l~-----~~~~~fD~Vi~~~v--~~~~~d----~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 133 RLG-EIEALP-----VADNSVDVIISNCV--INLSPD----KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred EEc-chhhCC-----CCCCceeEEEEcCc--ccCCCC----HHHHHHHHHHHcCCCcEEEE
Confidence 222 343332 2222 34555655 455543 34444555677999976654
No 55
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=67.88 E-value=35 Score=35.06 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=41.3
Q ss_pred HhhccCCCCCchh-HhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 254 NFYDKSPWFAFPN-NIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 254 ~f~e~sP~~kfah-ftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
.-+.+.|-.+++. |..|+.|++.+-..-. -...-+|+|+|.|.|. |...|+.+ ++ ++|+|+..
T Consensus 10 ~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~----lt~~L~~~--~~----~v~avE~d 73 (272)
T PRK00274 10 ERYGHRAKKSLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGA----LTEPLLER--AA----KVTAVEID 73 (272)
T ss_pred HHcCCCCCcccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccH----HHHHHHHh--CC----cEEEEECC
Confidence 3445566666776 7777777765543222 1123689999999984 66677776 21 78999875
No 56
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=67.14 E-value=81 Score=31.25 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=60.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-.|+|++.|.| .--|.+|+.. .-+||+|+.... +-+.+.+-++.+|+. .+..+
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~------a~~V~~vE~~~~-----------------a~~~a~~Nl~~~~~~-~v~~~ 107 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY------AAGATLLEMDRA-----------------VAQQLIKNLATLKAG-NARVV 107 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC------CCEEEEEECCHH-----------------HHHHHHHHHHHhCCC-cEEEE
Confidence 57999999998 2334456542 147999976432 223334445555553 23333
Q ss_pred ecCCCCC-CccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHh---cCCCEEEEEeccCC
Q 008559 368 ESHPLQD-LSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRS---LEPKGVILSENNMD 430 (561)
Q Consensus 368 ~~~~le~-L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~---L~PkvVvlvE~ead 430 (561)
.. ++.. +. . . ..+=+.|++|=.|+- +-...+++.|.. |.|+-+|.+|....
T Consensus 108 ~~-D~~~~l~-~-~-~~~fDlV~~DPPy~~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 108 NT-NALSFLA-Q-P-GTPHNVVFVDPPFRK--------GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred Ec-hHHHHHh-h-c-CCCceEEEECCCCCC--------ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 32 2211 11 0 0 112368888866541 234567788877 79999999998776
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=66.74 E-value=50 Score=32.16 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=53.0
Q ss_pred EEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEe
Q 008559 289 HILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLE 368 (561)
Q Consensus 289 HIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~ 368 (561)
+|+|+|.|.|. ++..|+.+- | ..++|||+.+.. .-....+.++..|+.-.+..+.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~-~~~v~gid~s~~-----------------~~~~a~~~~~~~gl~~~i~~~~ 56 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---P-HLQLHGYTISPE-----------------QAEVGRERIRALGLQGRIRIFY 56 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---C-CCEEEEEECCHH-----------------HHHHHHHHHHhcCCCcceEEEe
Confidence 68999999985 344566553 2 378999987421 1222223334445544333333
Q ss_pred cCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEE
Q 008559 369 SHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILS 425 (561)
Q Consensus 369 ~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlv 425 (561)
. +.+... +. ..=+.|+ +...+||+.+ ...+|+.+ +-|+|...+++
T Consensus 57 ~-d~~~~~---~~-~~fD~I~--~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 57 R-DSAKDP---FP-DTYDLVF--GFEVIHHIKD-----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred c-ccccCC---CC-CCCCEee--hHHHHHhCCC-----HHHHHHHHHHHcCCCCEEEE
Confidence 2 221111 10 1112333 3445677743 35677766 55999977765
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=65.70 E-value=14 Score=31.17 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCC
Q 008559 291 LDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAE 329 (561)
Q Consensus 291 IDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~ 329 (561)
+|+|.|.|.==..|++.+ | ..++|+++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~-~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------P-DARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhC-------C-CCEEEEEECCHH
Confidence 588888886555555555 3 699999998754
No 59
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=63.20 E-value=30 Score=35.54 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=64.7
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
-.|+|+|+|-|-+ -+-|++|= | --.||||+++. ..|.+- +...++.+|..-
T Consensus 32 ~~v~DLGCGpGns----TelL~~Rw---P-~A~i~GiDsS~--------------------~Mla~A-a~rlp~~~f~~a 82 (257)
T COG4106 32 RRVVDLGCGPGNS----TELLARRW---P-DAVITGIDSSP--------------------AMLAKA-AQRLPDATFEEA 82 (257)
T ss_pred ceeeecCCCCCHH----HHHHHHhC---C-CCeEeeccCCH--------------------HHHHHH-HHhCCCCceecc
Confidence 6799999999965 35566665 2 46789998753 334443 444455555433
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEeccCC
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMD 430 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ead 430 (561)
....| +++ .+-..|.-|++|+ -|++ .-+-|=+++-.|.|..|.-|-.-.|
T Consensus 83 Dl~~w---~p~----~~~dllfaNAvlq--Wlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 83 DLRTW---KPE----QPTDLLFANAVLQ--WLPD----HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cHhhc---CCC----Cccchhhhhhhhh--hccc----cHHHHHHHHHhhCCCceEEEECCCc
Confidence 22122 221 1234677788766 3554 5577888899999999998876666
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=61.41 E-value=60 Score=31.43 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
--|+|+|.|.|. ++-.||.+- | ...++||+.... .-++..+-++..|+. .++.+
T Consensus 18 ~~ilDiGcG~G~----~~~~la~~~---p-~~~v~gvD~~~~-----------------~l~~a~~~~~~~~l~-ni~~i 71 (194)
T TIGR00091 18 PLHLEIGCGKGR----FLIDMAKQN---P-DKNFLGIEIHTP-----------------IVLAANNKANKLGLK-NLHVL 71 (194)
T ss_pred ceEEEeCCCccH----HHHHHHHhC---C-CCCEEEEEeeHH-----------------HHHHHHHHHHHhCCC-CEEEE
Confidence 469999999985 445556553 3 478999987532 223333334445553 23334
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCC-CCchHHHHHHHH-HhcCCCEEEEEeccCC
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHS-TPDERTEFLRVL-RSLEPKGVILSENNMD 430 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~e-s~~~r~~~L~~I-R~L~PkvVvlvE~ead 430 (561)
.. ++.++....+.-..=+.|++|+..--+.-.+. ..--...||+.+ +.|+|...+....+..
T Consensus 72 ~~-d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 72 CG-DANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred cc-CHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 33 23222111111111135555543211000000 000015677775 6689999887765544
No 61
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=59.74 E-value=18 Score=27.05 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=26.2
Q ss_pred CEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEE
Q 008559 386 ETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILS 425 (561)
Q Consensus 386 EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlv 425 (561)
|.+-|||....-++..- ..++.++++|+.++|+-|+++
T Consensus 1 e~i~v~a~v~~~~fSgH--ad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGH--ADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS---BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCC--CCHHHHHHHHHhcCCCEEEEe
Confidence 45667776653335432 467899999999999999987
No 62
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=59.70 E-value=70 Score=34.16 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=83.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF~~ 366 (561)
..|||||.|.|..=..||++|..+ +.+ ++-.+|+-+.+. ++++.++|. .-..| +++.+
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~--~~~--~~Y~plDIS~~~-------------L~~a~~~L~----~~~~p~l~v~~ 136 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQ--KKS--VDYYALDVSRSE-------------LQRTLAELP----LGNFSHVRCAG 136 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhc--CCC--ceEEEEECCHHH-------------HHHHHHhhh----hccCCCeEEEE
Confidence 579999999999999999999843 223 778899886542 566666665 11234 77888
Q ss_pred EecCCCCC----CccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHh--cCCCEEEEEeccCCC------CCC
Q 008559 367 LESHPLQD----LSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRS--LEPKGVILSENNMDC------SCG 434 (561)
Q Consensus 367 V~~~~le~----L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~--L~PkvVvlvE~ead~------~~~ 434 (561)
|.. ..++ +.... ....-.++.-.--.+.++. +.....||+.+++ |+|.-..++=.|..- .++
T Consensus 137 l~g-dy~~~l~~l~~~~--~~~~~r~~~flGSsiGNf~---~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 137 LLG-TYDDGLAWLKRPE--NRSRPTTILWLGSSIGNFS---RPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred EEe-cHHHHHhhccccc--ccCCccEEEEeCccccCCC---HHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 765 2211 11100 1111233333323444432 3566789999987 899766665333320 124
Q ss_pred CCC-Ch-hhHHHHHHHHHHHHHhh
Q 008559 435 NCG-DF-ATGFARRVEYLWRFLDS 456 (561)
Q Consensus 435 n~~-~F-~~RF~eaL~yY~alfDS 456 (561)
|.+ .. .....+.|.+.-..|++
T Consensus 211 ~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 211 NDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred cCCcchhHHHHHHHHHHHHHHhCc
Confidence 443 33 33346677777666664
No 63
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=57.93 E-value=2e+02 Score=28.82 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=22.4
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
-.|+|.|.|.|. -+..||.+ | ..+|||+...
T Consensus 39 ~rvL~~gCG~G~----da~~LA~~--G----~~V~avD~s~ 69 (218)
T PRK13255 39 SRVLVPLCGKSL----DMLWLAEQ--G----HEVLGVELSE 69 (218)
T ss_pred CeEEEeCCCChH----hHHHHHhC--C----CeEEEEccCH
Confidence 578999999983 34456665 2 6899998753
No 64
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=57.23 E-value=1.5e+02 Score=31.93 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=22.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
.+|+|+|.|.|.- ...|+.+-+ ..++|+|+..
T Consensus 115 ~~VLDLGcGtG~~----~l~La~~~~----~~~VtgVD~S 146 (340)
T PLN02490 115 LKVVDVGGGTGFT----TLGIVKHVD----AKNVTILDQS 146 (340)
T ss_pred CEEEEEecCCcHH----HHHHHHHCC----CCEEEEEECC
Confidence 7999999999973 334444431 1579999874
No 65
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=56.16 E-value=41 Score=30.96 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=25.7
Q ss_pred cceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 286 QNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 286 ~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
+..+|||||-|.|.==-.|-..|... . | .++|++|+...
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~--~-~-~~~v~~iD~~~ 63 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNS--S-P-NLRVLGIDCNE 63 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhc--C-C-CCeEEEEECCc
Confidence 45999999999985322232333322 2 3 59999998764
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=55.71 E-value=1.7e+02 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=23.3
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
.+|+|+|.|.| .+.-.|+.+. | ..+++||+..
T Consensus 89 ~~ilDig~G~G----~~~~~l~~~~---~-~~~v~~iD~~ 120 (251)
T TIGR03534 89 LRVLDLGTGSG----AIALALAKER---P-DARVTAVDIS 120 (251)
T ss_pred CeEEEEeCcHh----HHHHHHHHHC---C-CCEEEEEECC
Confidence 68999999998 4445555542 2 4789999864
No 67
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=55.60 E-value=1.8e+02 Score=28.19 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=56.7
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
+-|.+.+..... ..+...|+|+|.|.|. +...|+.. + .++++|+.... .-..
T Consensus 31 ~~i~~~~~~~~~-~~~~~~vLdlG~G~G~----~~~~l~~~--~----~~v~~iD~s~~-----------------~~~~ 82 (224)
T TIGR01983 31 DYIRDTIRKNKK-PLFGLRVLDVGCGGGL----LSEPLARL--G----ANVTGIDASEE-----------------NIEV 82 (224)
T ss_pred HHHHHHHHhccc-CCCCCeEEEECCCCCH----HHHHHHhc--C----CeEEEEeCCHH-----------------HHHH
Confidence 444555543221 1233789999999984 33445543 2 24889886432 1122
Q ss_pred HHHHHHhcCc-eEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEEe
Q 008559 351 LLGFAKSMNI-NLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILSE 426 (561)
Q Consensus 351 L~~fA~~lgV-pFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlvE 426 (561)
..+.+...++ .+.|.... ++++.... ...-+.|+. ...|||+.+ + ..+|+.+ +.|+|..++++.
T Consensus 83 a~~~~~~~~~~~~~~~~~d---~~~~~~~~--~~~~D~i~~--~~~l~~~~~----~-~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 83 AKLHAKKDPLLKIEYRCTS---VEDLAEKG--AKSFDVVTC--MEVLEHVPD----P-QAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHHHHHcCCCceEEEeCC---HHHhhcCC--CCCccEEEe--hhHHHhCCC----H-HHHHHHHHHhcCCCcEEEEE
Confidence 2222333444 34443322 22221111 112234443 345666643 3 4566655 668999877653
No 68
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=50.37 E-value=2.2e+02 Score=26.68 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=28.1
Q ss_pred HHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 272 SILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 272 AILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
.|++.+.-... -+|+|+|.|.|. |...|+.+ + -++|+|+...
T Consensus 4 ~i~~~~~~~~~-----~~vLEiG~G~G~----lt~~l~~~-~-----~~v~~vE~~~ 45 (169)
T smart00650 4 KIVRAANLRPG-----DTVLEIGPGKGA----LTEELLER-A-----ARVTAIEIDP 45 (169)
T ss_pred HHHHhcCCCCc-----CEEEEECCCccH----HHHHHHhc-C-----CeEEEEECCH
Confidence 45555543333 589999999986 55566666 2 3789998753
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=49.00 E-value=2.4e+02 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-.|+|+|.|.|. +...|+.+ |+ ++++|+..
T Consensus 21 ~~vLdlG~G~G~----~~~~l~~~--~~----~v~~vD~s 50 (179)
T TIGR00537 21 DDVLEIGAGTGL----VAIRLKGK--GK----CILTTDIN 50 (179)
T ss_pred CeEEEeCCChhH----HHHHHHhc--CC----EEEEEECC
Confidence 359999999994 55666665 32 89999875
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=48.75 E-value=2.3e+02 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=23.0
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-.|+|+|.|.|. +...|+.+ + .+||+++..
T Consensus 25 ~~vLd~G~G~G~----~~~~l~~~--~----~~v~~~D~s 54 (188)
T PRK14968 25 DRVLEVGTGSGI----VAIVAAKN--G----KKVVGVDIN 54 (188)
T ss_pred CEEEEEccccCH----HHHHHHhh--c----ceEEEEECC
Confidence 579999999998 56666666 2 578999864
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=46.19 E-value=1.2e+02 Score=33.09 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=63.4
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
..+|+.+..... =+|+|+|.|.|. +--.|+.+. | ..+||+|+.+... ++.+.++
T Consensus 218 rllL~~lp~~~~-----~~VLDLGCGtGv----i~i~la~~~---P-~~~V~~vD~S~~A-------------v~~A~~N 271 (378)
T PRK15001 218 RFFMQHLPENLE-----GEIVDLGCGNGV----IGLTLLDKN---P-QAKVVFVDESPMA-------------VASSRLN 271 (378)
T ss_pred HHHHHhCCcccC-----CeEEEEeccccH----HHHHHHHhC---C-CCEEEEEECCHHH-------------HHHHHHH
Confidence 345555543332 379999999997 444566653 3 5899999875321 2334444
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccc-cCCCCCchHHHHHH-HHHhcCCCEEEEEecc
Q 008559 351 LLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHH-LNHSTPDERTEFLR-VLRSLEPKGVILSENN 428 (561)
Q Consensus 351 L~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~-L~~es~~~r~~~L~-~IR~L~PkvVvlvE~e 428 (561)
+....-.-.-.++|. ..+-++.+.. ..=+.|+.|-.|..-+ +.+ .-...+++ .-+.|+|...+.++.+
T Consensus 272 ~~~n~~~~~~~v~~~--~~D~l~~~~~-----~~fDlIlsNPPfh~~~~~~~---~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 272 VETNMPEALDRCEFM--INNALSGVEP-----FRFNAVLCNPPFHQQHALTD---NVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHcCcccCceEEEE--EccccccCCC-----CCEEEEEECcCcccCccCCH---HHHHHHHHHHHHhcccCCEEEEEEe
Confidence 332211000133443 2211222211 1225777787775322 221 22334554 4467999988887753
No 72
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=44.17 E-value=3.6e+02 Score=27.41 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=36.1
Q ss_pred chHHHHHHHHhhccCCCCCchhHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEe
Q 008559 245 PRFFQKSLLNFYDKSPWFAFPNNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTII 324 (561)
Q Consensus 245 ~~~~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI 324 (561)
.+.+.+|...|.+..=|-. -...|.+.+...- ....-+|+|+|.|.|.--..|.+.+... . ...++||
T Consensus 51 ~~~~~~ar~~fl~~g~y~~-----l~~~i~~~l~~~l--~~~~~~vLDiGcG~G~~~~~l~~~~~~~----~-~~~v~gi 118 (272)
T PRK11088 51 NKEMMQARRAFLDAGHYQP-----LRDAVANLLAERL--DEKATALLDIGCGEGYYTHALADALPEI----T-TMQLFGL 118 (272)
T ss_pred CHHHHHHHHHHHHCCChHH-----HHHHHHHHHHHhc--CCCCCeEEEECCcCCHHHHHHHHhcccc----c-CCeEEEE
Confidence 3556677777766431111 1122323332110 0112679999999996433343333211 1 2578999
Q ss_pred cCC
Q 008559 325 APT 327 (561)
Q Consensus 325 ~~~ 327 (561)
+.+
T Consensus 119 D~s 121 (272)
T PRK11088 119 DIS 121 (272)
T ss_pred CCC
Confidence 874
No 73
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=43.60 E-value=2.5e+02 Score=30.05 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=79.6
Q ss_pred HHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHH
Q 008559 271 SSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQ 350 (561)
Q Consensus 271 qAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~r 350 (561)
+.|-+|++.=.. ..+.|||+|+-.|+|. -++++|..-+..| ..|+-.+.+..+ -+.|+.
T Consensus 121 ~~i~~ai~~L~~-~g~pvrIlDIAaG~GR---YvlDal~~~~~~~---~~i~LrDys~~N--------------v~~g~~ 179 (311)
T PF12147_consen 121 ELIRQAIARLRE-QGRPVRILDIAAGHGR---YVLDALEKHPERP---DSILLRDYSPIN--------------VEKGRA 179 (311)
T ss_pred HHHHHHHHHHHh-cCCceEEEEeccCCcH---HHHHHHHhCCCCC---ceEEEEeCCHHH--------------HHHHHH
Confidence 344455543221 2345999999999995 4999999887553 355555543221 245665
Q ss_pred HHHHHHhcCce--EEEEEEecCCCCCCccccc-cCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHh-cCCCEEEEEe
Q 008559 351 LLGFAKSMNIN--LQINRLESHPLQDLSSQMV-STSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRS-LEPKGVILSE 426 (561)
Q Consensus 351 L~~fA~~lgVp--FeF~~V~~~~le~L~~~~L-~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~-L~PkvVvlvE 426 (561)
|.+ ..|+. ++|..-.+ ++.+.+ .+.|--.|+|-| .|+-|..+ ..-+..-|+-+.. +.|..+++-=
T Consensus 180 li~---~~gL~~i~~f~~~dA-----fd~~~l~~l~p~P~l~iVs--GL~ElF~D-n~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 180 LIA---ERGLEDIARFEQGDA-----FDRDSLAALDPAPTLAIVS--GLYELFPD-NDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred HHH---HcCCccceEEEecCC-----CCHhHhhccCCCCCEEEEe--cchhhCCc-HHHHHHHHHHHHHHhCCCcEEEEc
Confidence 544 44433 45665543 444444 345554555543 45566543 1234445555544 9999988876
Q ss_pred ccCCCCCCCCCChhhHH
Q 008559 427 NNMDCSCGNCGDFATGF 443 (561)
Q Consensus 427 ~ead~~~~n~~~F~~RF 443 (561)
.--. |-...|+.|.
T Consensus 249 gQPw---HPQle~IAr~ 262 (311)
T PF12147_consen 249 GQPW---HPQLEMIARV 262 (311)
T ss_pred CCCC---CcchHHHHHH
Confidence 6667 6666666654
No 74
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=41.93 E-value=2.4e+02 Score=28.43 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=31.1
Q ss_pred hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 266 NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 266 hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
||..|..|++.+-..-. ....-.|+|+|.|.|. |...|+.+. + ++++|+..
T Consensus 10 ~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~----lt~~L~~~~---~---~v~~iE~d 60 (253)
T TIGR00755 10 NFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGA----LTEPLLKRA---K---KVTAIEID 60 (253)
T ss_pred ccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCH----HHHHHHHhC---C---cEEEEECC
Confidence 34455555554433221 1122689999999987 667777663 2 38999774
No 75
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=41.21 E-value=65 Score=35.40 Aligned_cols=150 Identities=8% Similarity=0.047 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCceEEEEEEecCCCCCCcccccc--CCC-CCEEEEEeeccccccCCCC----CchHHHHHHHHHhcCC
Q 008559 347 YSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVS--TSP-EETLIVCTQFRLHHLNHST----PDERTEFLRVLRSLEP 419 (561)
Q Consensus 347 tg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~--~~~-~EaLaVN~~f~LH~L~~es----~~~r~~~L~~IR~L~P 419 (561)
+|.|+.+.|+++|.+...-... --+.++++++. ++. +++=+|-++ | .|+ -+|+.++=+.+|+.
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~v---H---~ETSTGvlnpl~~I~~~~k~~-- 160 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVV---H---NETSTGVLNPLKEIAKAAKEH-- 160 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEE---e---ccCcccccCcHHHHHHHHHHc--
Confidence 7999999999999987766553 22457776652 332 222233222 1 133 26888899999988
Q ss_pred CEEEEEeccCCCC--------------------CCCC------CChhhHHHHHHH------HHHHHHhhhh---hh--c-
Q 008559 420 KGVILSENNMDCS--------------------CGNC------GDFATGFARRVE------YLWRFLDSTS---AA--F- 461 (561)
Q Consensus 420 kvVvlvE~ead~~--------------------~~n~------~~F~~RF~eaL~------yY~alfDSLd---aa--~- 461 (561)
..+++|+--+..+ |..+ -.+.+|..+++. ||..+.+=++ .. +
T Consensus 161 g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p 240 (383)
T COG0075 161 GALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTP 240 (383)
T ss_pred CCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCC
Confidence 5666665544422 2222 245677777776 6655544443 21 1
Q ss_pred -CCCChH---HhhhheeeeecccccccccccChHHH-HHHHhcCCCcccc
Q 008559 462 -KGRESE---ERRVMEGEAAKALTNRAEMNEGKDKW-CDRMRGVGFVGDV 506 (561)
Q Consensus 462 -~~r~s~---eR~~iEivA~EG~~Rv~ER~E~~~~W-r~Rm~~AGF~~vp 506 (561)
.|.-+. =+..++.+..||++.+.+||.....+ ++.|+..||+.+.
T Consensus 241 ~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 241 YTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 112122 23445577889976555999877655 6667889998877
No 76
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=40.94 E-value=1e+02 Score=32.42 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 266 NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 266 hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
||..|..|++.+-.... -...=.|+|+|.|.|. |-..|+.+. -++++|+..
T Consensus 17 nFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~----LT~~Ll~~~------~~V~avEiD 67 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGN----LTEKLLQLA------KKVIAIEID 67 (294)
T ss_pred cccCCHHHHHHHHHhcC-CCCcCEEEEecCchHH----HHHHHHHhC------CcEEEEECC
Confidence 55566666665543322 1122479999999886 445555542 268999875
No 77
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=40.66 E-value=3.8e+02 Score=26.65 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=22.1
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
-.|+|+|.|.|. =...||.+ | ..+|||+.+.
T Consensus 36 ~rvLd~GCG~G~----da~~LA~~--G----~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSL----DLAWLAEQ--G----HRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchh----HHHHHHhC--C----CeEEEEeCCH
Confidence 579999999983 23445665 3 6789998753
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=40.65 E-value=2.3e+02 Score=27.58 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=23.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
-.|+|+|.|.|.-...| +.+. | ..+||+|+...
T Consensus 42 ~~VLDiGcGtG~~~~~l----a~~~---p-~~~v~gVD~s~ 74 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEM----AKAN---P-DINFIGIEVHE 74 (202)
T ss_pred CeEEEEccCCCHHHHHH----HHHC---C-CccEEEEEech
Confidence 67999999999755444 4432 3 46899998754
No 79
>PRK04457 spermidine synthase; Provisional
Probab=40.31 E-value=2.7e+02 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=23.3
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-+|+|+|.|.|. +...|+.+. | ..+||+|+..
T Consensus 68 ~~vL~IG~G~G~----l~~~l~~~~---p-~~~v~~VEid 99 (262)
T PRK04457 68 QHILQIGLGGGS----LAKFIYTYL---P-DTRQTAVEIN 99 (262)
T ss_pred CEEEEECCCHhH----HHHHHHHhC---C-CCeEEEEECC
Confidence 468999999875 555566553 3 5899999874
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=38.62 E-value=3.5e+02 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=26.2
Q ss_pred HHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 273 ILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 273 ILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
+++.++-... -+|+|+|.|.|..=..|.+.+ ++ .-++++|+..
T Consensus 64 ~~~~l~~~~~-----~~VLDiG~GsG~~~~~la~~~-----~~--~g~V~~iD~~ 106 (205)
T PRK13944 64 MCELIEPRPG-----MKILEVGTGSGYQAAVCAEAI-----ER--RGKVYTVEIV 106 (205)
T ss_pred HHHhcCCCCC-----CEEEEECcCccHHHHHHHHhc-----CC--CCEEEEEeCC
Confidence 4455543333 689999999987443333332 11 2479999875
No 81
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=37.20 E-value=3.4e+02 Score=29.94 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=57.5
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF~~ 366 (561)
-+|+|+|.|.|. +--.||.+. -+++||+...+. ++.+ .+-|+..|+. .+|..
T Consensus 299 ~~VLDlgcGtG~----~sl~la~~~------~~V~gvD~s~~a-------------l~~A----~~n~~~~~~~~v~~~~ 351 (443)
T PRK13168 299 DRVLDLFCGLGN----FTLPLARQA------AEVVGVEGVEAM-------------VERA----RENARRNGLDNVTFYH 351 (443)
T ss_pred CEEEEEeccCCH----HHHHHHHhC------CEEEEEeCCHHH-------------HHHH----HHHHHHcCCCceEEEE
Confidence 689999999995 334566652 378999875321 2222 3334445553 44443
Q ss_pred EecCCCCC-CccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEeccCC
Q 008559 367 LESHPLQD-LSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMD 430 (561)
Q Consensus 367 V~~~~le~-L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ead 430 (561)
-. +++ +....+.-..=++|++|-... ....++..|.+++|+.+|.+.-+..
T Consensus 352 ~d---~~~~l~~~~~~~~~fD~Vi~dPPr~----------g~~~~~~~l~~~~~~~ivyvSCnp~ 403 (443)
T PRK13168 352 AN---LEEDFTDQPWALGGFDKVLLDPPRA----------GAAEVMQALAKLGPKRIVYVSCNPA 403 (443)
T ss_pred eC---hHHhhhhhhhhcCCCCEEEECcCCc----------ChHHHHHHHHhcCCCeEEEEEeChH
Confidence 32 222 110001111225777763211 2356789999999999988765544
No 82
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=35.07 E-value=3.9e+02 Score=25.15 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=64.1
Q ss_pred hhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHH
Q 008559 268 IANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNY 347 (561)
Q Consensus 268 tANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~et 347 (561)
.+-..+++.+..... =+|+|+|.|.|. +=-.|+.+ + | ..++++++.... +
T Consensus 18 ~~t~lL~~~l~~~~~-----~~vLDlG~G~G~----i~~~la~~--~-~-~~~v~~vDi~~~-----------------a 67 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKG-----GRVLDLGCGSGV----ISLALAKR--G-P-DAKVTAVDINPD-----------------A 67 (170)
T ss_dssp HHHHHHHHHHHHHTT-----CEEEEETSTTSH----HHHHHHHT--S-T-CEEEEEEESBHH-----------------H
T ss_pred HHHHHHHHHHhhccC-----CeEEEecCChHH----HHHHHHHh--C-C-CCEEEEEcCCHH-----------------H
Confidence 355577888876555 789999999994 22244444 3 2 588999987432 2
Q ss_pred HHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHH-HHhcCCCEEEEE
Q 008559 348 SLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRV-LRSLEPKGVILS 425 (561)
Q Consensus 348 g~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~-IR~L~PkvVvlv 425 (561)
-+...+-++..++.- ++.+..+-++.+. -..=+.|+.|=.+ |.-.++.-.....|++. -+-|+|......
T Consensus 68 ~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-----~~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 68 LELAKRNAERNGLEN-VEVVQSDLFEALP-----DGKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp HHHHHHHHHHTTCTT-EEEEESSTTTTCC-----TTCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhcCccc-ccccccccccccc-----ccceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 333344455666663 4444442223222 1223577777662 22221111123455544 456999986643
No 83
>PLN03075 nicotianamine synthase; Provisional
Probab=32.74 E-value=3.6e+02 Score=28.70 Aligned_cols=108 Identities=7% Similarity=0.179 Sum_probs=58.7
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRL 367 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V 367 (561)
=.|+|+|.|.|-=+..++.+-.- | .-++|+|+...+ ..+..+++.+-...+.=..+|+..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~-----p-~~~~~giD~d~~--------------ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHL-----P-TTSFHNFDIDPS--------------ANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcC-----C-CCEEEEEeCCHH--------------HHHHHHHHhhhccCccCCcEEEEC
Confidence 35999999988767666544321 3 469999987543 233444443221222223555554
Q ss_pred ecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHH-HhcCCCEEEEEec
Q 008559 368 ESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVL-RSLEPKGVILSEN 427 (561)
Q Consensus 368 ~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~I-R~L~PkvVvlvE~ 427 (561)
.. .+ +.. ...+=+.|.+. .||++..+ ++ ..+|+.| +.|+|..++++.-
T Consensus 185 Da--~~-~~~---~l~~FDlVF~~---ALi~~dk~--~k-~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 185 DV--MD-VTE---SLKEYDVVFLA---ALVGMDKE--EK-VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ch--hh-ccc---ccCCcCEEEEe---cccccccc--cH-HHHHHHHHHhcCCCcEEEEec
Confidence 32 11 110 01122233333 78877432 34 4555554 6699999999876
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=32.03 E-value=5.9e+02 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=24.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
.+|+|+|.|.|. +.-.|+.+. | ..++|+|+.+.
T Consensus 123 ~~vLDlG~GsG~----i~~~la~~~---~-~~~v~avDis~ 155 (284)
T TIGR03533 123 KRILDLCTGSGC----IAIACAYAF---P-EAEVDAVDISP 155 (284)
T ss_pred CEEEEEeCchhH----HHHHHHHHC---C-CCEEEEEECCH
Confidence 689999999985 455566543 2 47999998753
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=30.93 E-value=4.7e+02 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=21.2
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
-+|+|+|.|.|.- ...|+.. | .-+||+|+..
T Consensus 38 ~~vLDlGcG~G~~----~~~la~~--~---~~~v~~vD~s 68 (223)
T PRK14967 38 RRVLDLCTGSGAL----AVAAAAA--G---AGSVTAVDIS 68 (223)
T ss_pred CeEEEecCCHHHH----HHHHHHc--C---CCeEEEEECC
Confidence 6899999999872 2234443 2 1489999874
No 86
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=30.46 E-value=2.4e+02 Score=28.67 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=32.6
Q ss_pred hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 266 NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 266 hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
||..++.|++.+-..-. -...=+|+|+|.|.|. |...|+.+. .++|+|+..
T Consensus 10 nfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~----lt~~L~~~~------~~v~~vEid 60 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGA----LTDELAKRA------KKVYAIELD 60 (258)
T ss_pred cccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCH----HHHHHHHhC------CEEEEEECC
Confidence 45566666666644322 1122579999999986 555666662 378999875
No 87
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=29.55 E-value=4.9e+02 Score=24.63 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
-.|+|+|.|.|. +.-.++.+ + | ..++|+|+...
T Consensus 33 ~~vLDiG~G~G~----~~~~la~~--~-~-~~~v~~vD~s~ 65 (187)
T PRK08287 33 KHLIDVGAGTGS----VSIEAALQ--F-P-SLQVTAIERNP 65 (187)
T ss_pred CEEEEECCcCCH----HHHHHHHH--C-C-CCEEEEEECCH
Confidence 579999999983 33344444 2 3 48999998753
No 88
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=29.24 E-value=88 Score=37.27 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHhh
Q 008559 185 NLTRVQHLLYVLHE 198 (561)
Q Consensus 185 n~~~A~~lL~~L~~ 198 (561)
+.+.+.+|+..|..
T Consensus 366 ~~~~VksiF~~LQ~ 379 (911)
T PF05086_consen 366 NTEVVKSIFNSLQN 379 (911)
T ss_pred cHHHHHHHHHHHhc
Confidence 66777777776653
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=29.24 E-value=5.7e+02 Score=28.28 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=29.8
Q ss_pred HHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 273 ILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 273 ILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
+++.+.+... -.|||+|.|.| .++-.||.+. | ...++||+..
T Consensus 114 ~~~~~~~~~~-----p~vLEIGcGsG----~~ll~lA~~~---P-~~~~iGIEI~ 155 (390)
T PRK14121 114 FLDFISKNQE-----KILIEIGFGSG----RHLLYQAKNN---P-NKLFIGIEIH 155 (390)
T ss_pred HHHHhcCCCC-----CeEEEEcCccc----HHHHHHHHhC---C-CCCEEEEECC
Confidence 3445555444 57999999999 5667777764 3 4789999874
No 90
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=29.21 E-value=1.2e+02 Score=29.57 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=46.3
Q ss_pred cHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHhhhcc
Q 008559 169 WAEQLLNPCA-AAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSS 224 (561)
Q Consensus 169 ~l~~LLl~CA-~AV~~gn~~~A~~lL~~L~~laSp~Gd~~qRlA~yFaeAL~~RL~g 224 (561)
-+.++|+-|. .++..++...|+.+|..|.++..|..+...|+...|.+||..=..|
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 4555565555 7888899999999999999999888888999999999999755544
No 91
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.09 E-value=3.6e+02 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=22.9
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
=+|+|+|.|.|.. ...|+++. | ..++|+|+...
T Consensus 21 ~~vldlG~G~G~~----~~~l~~~~---~-~~~v~~vD~s~ 53 (124)
T TIGR02469 21 DVLWDIGAGSGSI----TIEAARLV---P-NGRVYAIERNP 53 (124)
T ss_pred CEEEEeCCCCCHH----HHHHHHHC---C-CceEEEEcCCH
Confidence 4899999999754 34445542 2 37899998753
No 92
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=28.88 E-value=6.2e+02 Score=26.50 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=59.1
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCce-EEEEE
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNIN-LQINR 366 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVp-FeF~~ 366 (561)
-+|+|+|.|.|. +--.||.+ | -+++||+.... .-+...+-|+..|++ .+|..
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~--~----~~V~gvD~s~~-----------------av~~A~~n~~~~~l~~v~~~~ 227 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP--G----MQLTGIEISAE-----------------AIACAKQSAAELGLTNVQFQA 227 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc--C----CEEEEEeCCHH-----------------HHHHHHHHHHHcCCCceEEEE
Confidence 689999999985 44455653 2 37899987532 223333445566664 55544
Q ss_pred EecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEEeccCC
Q 008559 367 LESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENNMD 430 (561)
Q Consensus 367 V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~ead 430 (561)
-. ++++... . ...-++|++|=. . .+--..+++.|.+++|+.+|.+.-+..
T Consensus 228 ~D---~~~~~~~-~-~~~~D~Vv~dPP--------r-~G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 228 LD---STQFATA-Q-GEVPDLVLVNPP--------R-RGIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred cC---HHHHHHh-c-CCCCeEEEECCC--------C-CCccHHHHHHHHHcCCCeEEEEECCcc
Confidence 32 2322211 1 112357777732 0 012246778899999998888765554
No 93
>PRK05723 flavodoxin; Provisional
Probab=27.92 E-value=5.2e+02 Score=24.36 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCC----
Q 008559 344 GDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEP---- 419 (561)
Q Consensus 344 l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~P---- 419 (561)
-+++.++|.+.++..|+........ .+.++ . ...++..|+|.+.+.- .+-|+.-..|.+.|++..|
T Consensus 14 ae~~A~~la~~l~~~g~~~~~~~~~--~~~~~--~--~~~~~~li~~~sT~G~----Ge~Pd~~~~f~~~L~~~~~~~l~ 83 (151)
T PRK05723 14 AEEVARHAESLLKAAGFEAWHNPRA--SLQDL--Q--AFAPEALLAVTSTTGM----GELPDNLMPLYSAIRDQLPAAWR 83 (151)
T ss_pred HHHHHHHHHHHHHHCCCceeecCcC--CHhHH--H--hCCCCeEEEEECCCCC----CCCchhHHHHHHHHHhcCccCCC
Confidence 4789999999998888765432111 22222 1 1233445666655542 1234556778888886544
Q ss_pred --CEEEEEeccCCCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcCCCChHHhhhheeeeecccccccccccChHHHHHHH
Q 008559 420 --KGVILSENNMDCSCGNCGDFATGFARRVEYLWRFLDSTSAAFKGRESEERRVMEGEAAKALTNRAEMNEGKDKWCDRM 497 (561)
Q Consensus 420 --kvVvlvE~ead~~~~n~~~F~~RF~eaL~yY~alfDSLdaa~~~r~s~eR~~iEivA~EG~~Rv~ER~E~~~~Wr~Rm 497 (561)
+.-|++=. ++ .+...|..+....-..|..+.+ .+++++.-++...+. ...+.+..|...+
T Consensus 84 ~~~~aVfGLG-------Ds-~Y~~~Fc~a~~~ld~~L~~lGA---------~rv~~~~~~D~~~~~-~~e~~~~~W~~~~ 145 (151)
T PRK05723 84 GLPGAVIALG-------DS-SYGDTFCGGGEQMRELFAELGV---------REVQPMLRLDASETV-TPETDAEPWLAEF 145 (151)
T ss_pred CCEEEEEeEe-------CC-cchHHHhHHHHHHHHHHHHCCC---------cEeeccEEeecCCCC-ChHHHHHHHHHHH
Confidence 22222222 22 4556788888888888888774 223333222222221 2356688998875
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=27.17 E-value=2.8e+02 Score=27.40 Aligned_cols=109 Identities=7% Similarity=0.055 Sum_probs=68.4
Q ss_pred eEEEEcccc---CCCchHHHHHHHHhCCCCCCCceEE------EEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Q 008559 288 LHILDIGVS---HGVQWPTLLEALTRRSGGPPPLVRL------TIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSM 358 (561)
Q Consensus 288 VHIIDfgI~---~G~QWpsLiqaLA~R~gGpP~~LRI------TgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~l 358 (561)
|+||.|=-+ -+-.=.++|.+|+.+ .+.+ |+|+... ....++.-+..|+++.
T Consensus 61 V~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd--------------~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 61 VRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADD--------------AIVGTGMFVKSSAKKG 120 (184)
T ss_pred EEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECcc--------------chhhHHHHHHHHHHHh
Confidence 999998754 346677899999765 2566 7887432 1356888999999999
Q ss_pred CceEEEEEEecCCCCCCccccccCCC-CCE-EEEEeecccccc--CCCCCchHHHHHHHHHhc
Q 008559 359 NINLQINRLESHPLQDLSSQMVSTSP-EET-LIVCTQFRLHHL--NHSTPDERTEFLRVLRSL 417 (561)
Q Consensus 359 gVpFeF~~V~~~~le~L~~~~L~~~~-~Ea-LaVN~~f~LH~L--~~es~~~r~~~L~~IR~L 417 (561)
++.|-|..+..+. +......+++.. .++ ++|+-.-.+... ..-+....+.++..|++|
T Consensus 121 ~~~~P~~~vllD~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 121 KKENPWSQVVLDD-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred cccCCcceEEECC-cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 9888777665422 222233455543 356 677766554432 221223445677777654
No 95
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=25.54 E-value=1.1e+02 Score=33.33 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=72.8
Q ss_pred hHhhhHHHHHHHhcCccCcccceEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCCCCCCHH
Q 008559 266 NNIANSSILQILAQDRHNQVQNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFSVGPPGD 345 (561)
Q Consensus 266 hftANqAILEA~~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~~~~~l~ 345 (561)
+.+=-+-|-+.+..... +.|+|.|.|. .||+-...+-+ ..-||+-.. ..++
T Consensus 104 NwIKs~LI~~y~~~~~~-------~~~LgCGKGG---DLlKw~kAgI~------~~igiDIAe-------------vSI~ 154 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDD-------VLDLGCGKGG---DLLKWDKAGIG------EYIGIDIAE-------------VSIN 154 (389)
T ss_pred HHHHHHHHHHHhccccc-------cceeccCCcc---cHhHhhhhccc------ceEeeehhh-------------ccHH
Confidence 44445556666654443 4568988885 34444433322 223454321 2467
Q ss_pred HHHHHHHHHHHhcCceEEEEEE--ecC-CCCCCccccccCCCCC-EEEEEeeccccccCCCCCchHHHHHHHHHhcCCCE
Q 008559 346 NYSLQLLGFAKSMNINLQINRL--ESH-PLQDLSSQMVSTSPEE-TLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKG 421 (561)
Q Consensus 346 etg~rL~~fA~~lgVpFeF~~V--~~~-~le~L~~~~L~~~~~E-aLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~Pkv 421 (561)
+...|-.+-=++.. .|-|.++ .++ ..+.|. +.+. -++. .=+|.|+|.||.--......|-.+.+..+.|+|..
T Consensus 155 qa~~RYrdm~~r~~-~~~f~a~f~~~Dc~~~~l~-d~~e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 155 QARKRYRDMKNRFK-KFIFTAVFIAADCFKERLM-DLLE-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred HHHHHHHHHHhhhh-cccceeEEEEeccchhHHH-Hhcc-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 77777776655554 3334443 221 111111 1111 2333 67999999999865322344555666678899997
Q ss_pred EEE-EeccCC
Q 008559 422 VIL-SENNMD 430 (561)
Q Consensus 422 Vvl-vE~ead 430 (561)
|.+ +-++++
T Consensus 232 ~FIgTiPdsd 241 (389)
T KOG1975|consen 232 VFIGTIPDSD 241 (389)
T ss_pred EEEEecCcHH
Confidence 766 466665
No 96
>PF15281 Consortin_C: Consortin C-terminus
Probab=25.34 E-value=92 Score=28.53 Aligned_cols=83 Identities=18% Similarity=0.156 Sum_probs=44.6
Q ss_pred CccccCCCCCCCCCCcchhhhhcccCCcCCccccCCcceeEeeccCCCccCcCCCCCCCCCCCCCcccccHHHHHHHHHH
Q 008559 100 SSKKRRNADDPRTRSSQSHHQRKNQGRRISETEEGNEEGVIVKRSVGNKKNTNKSTGNNGNNGNSKEGRWAEQLLNPCAA 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~k~~~~~~~~~~~~e~~~l~~LLl~CA~ 179 (561)
--|||.+..+.. ..|+|+++.++.-|..|.+|+.+. .-...+-||.-+|+-|+.
T Consensus 11 ILKkr~~~~g~~--~~~~~~~~sKRrVRF~eped~~dq------------------------d~~~g~Scl~L~LlclvT 64 (113)
T PF15281_consen 11 ILKKRNSTEGKE--VAQSQKKPSKRRVRFQEPEDTLDQ------------------------DEVGGDSCLLLLLLCLVT 64 (113)
T ss_pred hhcccccccCCc--ccccccccccceeeeeCccccccc------------------------cccCCCccHHHHHHHHHH
Confidence 346777665544 334444444444455577777662 111223577777765544
Q ss_pred HHHcCCHHHHHHHHHHHh-hccCCCCCchhHHHHHHHHHHH
Q 008559 180 AITAGNLTRVQHLLYVLH-ELASPTGDANHRLAAHGLRALT 219 (561)
Q Consensus 180 AV~~gn~~~A~~lL~~L~-~laSp~Gd~~qRlA~yFaeAL~ 219 (561)
- +|+... .+=.-.||..+++..-|+.++.
T Consensus 65 v-----------~lS~gGTALYCt~gd~~S~vC~df~~n~d 94 (113)
T PF15281_consen 65 V-----------VLSVGGTALYCTFGDMESSVCTDFAANMD 94 (113)
T ss_pred H-----------HHhccceEEEEecCCccchHHHHHHHHHH
Confidence 3 333333 3345567777777777766653
No 97
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=25.06 E-value=39 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.9
Q ss_pred cChHHHHHHHhcCCCccccC
Q 008559 488 EGKDKWCDRMRGVGFVGDVF 507 (561)
Q Consensus 488 E~~~~Wr~Rm~~AGF~~vpl 507 (561)
|+..+-|++|+++|++|+.+
T Consensus 3 ~RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHHcCCCccee
Confidence 44567799999999999986
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=23.81 E-value=3.5e+02 Score=21.02 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 289 HILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 289 HIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
+|+|+|.+.|. +...++.. + ..++++++...
T Consensus 1 ~ildig~G~G~----~~~~~~~~----~-~~~~~~~d~~~ 31 (107)
T cd02440 1 RVLDLGCGTGA----LALALASG----P-GARVTGVDISP 31 (107)
T ss_pred CeEEEcCCccH----HHHHHhcC----C-CCEEEEEeCCH
Confidence 47999999884 45555551 2 47899998643
No 99
>KOG4060 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=4.7e+02 Score=25.48 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=53.0
Q ss_pred ceEEEEecCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEE------
Q 008559 318 LVRLTIIAPTAENDQNAETPFSVGPPGDNYSLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVC------ 391 (561)
Q Consensus 318 ~LRITgI~~~~~~~~~~~~pf~~~~~l~etg~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN------ 391 (561)
-+||||-+.+. ++...+-+...|++|++..+=.-.. ..-+-+.+.++|.-++.-.
T Consensus 56 NV~i~gyD~~~---------------lEsYq~yvH~la~~l~~~V~dsYA~----p~qt~~v~~l~p~stv~ese~~ltT 116 (176)
T KOG4060|consen 56 NVHITGYDMTL---------------LESYQQYVHNLANSLSIKVEDSYAM----PTQTIEVLQLQPQSTVMESESVLTT 116 (176)
T ss_pred EEEEEecccch---------------HHHHHHHHHHHHHHcCceeEeeecc----CccceeEEEecCCceeeehhhhhhh
Confidence 58999998754 5677888999999988776543221 1111122233332222110
Q ss_pred --eeccccccCCCCCchHHHHHHHHHhcCCCEEEEEecc
Q 008559 392 --TQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILSENN 428 (561)
Q Consensus 392 --~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlvE~e 428 (561)
-+.+|..+ +..--..||+.|+.-=|..|.+.-+|
T Consensus 117 yeRvvqls~v---~Ap~~~~Fl~iiqa~lPeGV~l~VkE 152 (176)
T KOG4060|consen 117 YERVVQLSGV---SAPFAEIFLEIIQASLPEGVRLSVKE 152 (176)
T ss_pred hhheeeeccc---CchhHHHHHHHHHHhCCcceEEEeee
Confidence 01233222 22334689999999999999997544
No 100
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=22.06 E-value=47 Score=36.26 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.0
Q ss_pred cccceEEEEcccc
Q 008559 284 QVQNLHILDIGVS 296 (561)
Q Consensus 284 ~~~~VHIIDfgI~ 296 (561)
....|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 5678999999975
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.94 E-value=1e+02 Score=26.84 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCceEEEEEEecCCCCCCccccccCCCCCEEEEEeeccccccCCCCCchHHHHHHHHHhcCCCEEEEE
Q 008559 348 SLQLLGFAKSMNINLQINRLESHPLQDLSSQMVSTSPEETLIVCTQFRLHHLNHSTPDERTEFLRVLRSLEPKGVILS 425 (561)
Q Consensus 348 g~rL~~fA~~lgVpFeF~~V~~~~le~L~~~~L~~~~~EaLaVN~~f~LH~L~~es~~~r~~~L~~IR~L~PkvVvlv 425 (561)
-.-|..+.+..|..+++-.... +.+++.....+.+++ .|++++.+.- ++ .....+.+.+|+.+|++.|++
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-~~~~l~~~~~~~~pd-~V~iS~~~~~-~~-----~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-PPEELVEALRAERPD-VVGISVSMTP-NL-----PEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB--HHHHHHHHHHTTCS-EEEEEESSST-HH-----HHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEECCCC-CHHHHHHHHhcCCCc-EEEEEccCcC-cH-----HHHHHHHHHHHhcCCCCEEEE
Confidence 3567788888888777664433 223332222233444 7888874331 11 234678888999999977774
No 102
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=20.44 E-value=6.4e+02 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCC
Q 008559 289 HILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPT 327 (561)
Q Consensus 289 HIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~ 327 (561)
+|+|+|.|.|. +...+..+. + .-++|+|+..
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~-~~~v~~veid 105 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---S-VEKATLVDID 105 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---C-cceEEEEeCC
Confidence 88999999886 344555443 2 3678999764
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.38 E-value=7.8e+02 Score=25.90 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.9
Q ss_pred eEEEEccccCCCchHHHHHHHHhCCCCCCCceEEEEecCCC
Q 008559 288 LHILDIGVSHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTA 328 (561)
Q Consensus 288 VHIIDfgI~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~ 328 (561)
.+|+|+|.|.|. +.-.|+.+. | ..++|+++.+.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p-~~~V~avDis~ 167 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---P-DAEVDAVDISP 167 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---C-CCEEEEEeCCH
Confidence 589999999995 444555542 3 58999998753
No 104
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.15 E-value=1.1e+02 Score=31.97 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.2
Q ss_pred hcCccCcccceEEEEccccCCCchHHHHHHHHh
Q 008559 278 AQDRHNQVQNLHILDIGVSHGVQWPTLLEALTR 310 (561)
Q Consensus 278 ~g~~~~~~~~VHIIDfgI~~G~QWpsLiqaLA~ 310 (561)
.|.+. |||||||-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~-----lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTG-----GHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCE-----EEEEECCCCCccc-HHHHHHHHh
Confidence 46777 9999999877777 556777777
No 105
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.05 E-value=5.5e+02 Score=26.27 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=56.9
Q ss_pred hhHhhhHHHHHHHhcCccCcccceEEEEc----cc-cCCCchHHHHHHHHhCCCCCCCceEEEEecCCCCcCcCCCCCCC
Q 008559 265 PNNIANSSILQILAQDRHNQVQNLHILDI----GV-SHGVQWPTLLEALTRRSGGPPPLVRLTIIAPTAENDQNAETPFS 339 (561)
Q Consensus 265 ahftANqAILEA~~g~~~~~~~~VHIIDf----gI-~~G~QWpsLiqaLA~R~gGpP~~LRITgI~~~~~~~~~~~~pf~ 339 (561)
..|..|.+++++++..+. +.+.|||+=+ |+ +|=-+...||+.++.+ |-+ .+.|-+|....+.. |.
T Consensus 8 g~~~~n~~l~~~~~~~k~-~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~--gv~-~V~vH~f~DGRDt~-----P~- 77 (223)
T PF06415_consen 8 GSFFKNPVLLEAIEHAKK-NGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQ--GVK-KVYVHAFTDGRDTP-----PK- 77 (223)
T ss_dssp TGGGTSHHHHHHHHHHCC-TT--EEEEEEESS-SSS--HHHHHHHHHHHHHT--T-S-EEEEEEEE-SSSS------TT-
T ss_pred CCcccCHHHHHHHHHHHh-cCCeEEEEEEecCCCccccHHHHHHHHHHHHHc--CCC-EEEEEEecCCCCCC-----cc-
Confidence 467889999999998887 6678999855 33 2334677788777765 444 59999997765421 32
Q ss_pred CCCCHHHHHHHHHHHHHhcCceEEEEEEe
Q 008559 340 VGPPGDNYSLQLLGFAKSMNINLQINRLE 368 (561)
Q Consensus 340 ~~~~l~etg~rL~~fA~~lgVpFeF~~V~ 368 (561)
.....-+.|.++.+..|+- ++-.|.
T Consensus 78 ---S~~~yl~~l~~~l~~~~~g-~IAsv~ 102 (223)
T PF06415_consen 78 ---SALKYLEELEEKLAEIGIG-RIASVS 102 (223)
T ss_dssp ---THHHHHHHHHHHHHHHTCT-EEEEEE
T ss_pred ---hHHHHHHHHHHHHHhhCCc-eEEEEe
Confidence 3456667777777776543 444443
Done!