Query 008560
Match_columns 561
No_of_seqs 425 out of 2499
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 13:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 6.4E-37 1.4E-41 355.3 44.0 394 147-543 10-505 (2102)
2 PLN03200 cellulose synthase-in 100.0 5.8E-35 1.3E-39 339.1 44.0 388 151-543 59-547 (2102)
3 KOG4224 Armadillo repeat prote 100.0 7E-33 1.5E-37 265.8 24.1 386 148-540 83-478 (550)
4 KOG4224 Armadillo repeat prote 100.0 3.4E-31 7.4E-36 254.2 24.1 357 152-513 128-492 (550)
5 KOG0166 Karyopherin (importin) 100.0 3.6E-28 7.7E-33 249.5 38.0 396 151-550 67-482 (514)
6 KOG0166 Karyopherin (importin) 100.0 5E-29 1.1E-33 255.8 31.7 360 150-512 109-484 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 3.8E-26 8.1E-31 217.9 29.9 390 146-541 67-482 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.3E-25 5.1E-30 212.5 23.5 358 150-512 114-494 (526)
9 PF05804 KAP: Kinesin-associat 99.9 6.6E-22 1.4E-26 214.3 37.5 323 211-543 268-593 (708)
10 PF05804 KAP: Kinesin-associat 99.9 7.1E-22 1.5E-26 214.1 36.9 348 170-524 269-660 (708)
11 KOG1048 Neural adherens juncti 99.9 2.1E-19 4.6E-24 190.4 26.8 341 193-538 234-666 (717)
12 KOG2122 Beta-catenin-binding p 99.8 6.6E-18 1.4E-22 185.4 24.8 349 196-552 201-602 (2195)
13 KOG1048 Neural adherens juncti 99.8 3.6E-17 7.8E-22 173.6 27.6 377 148-529 231-699 (717)
14 KOG4199 Uncharacterized conser 99.7 3.8E-15 8.3E-20 142.9 29.6 313 161-481 118-454 (461)
15 KOG2122 Beta-catenin-binding p 99.7 8.4E-16 1.8E-20 169.2 25.7 356 154-516 201-603 (2195)
16 KOG4199 Uncharacterized conser 99.7 4.2E-14 9E-19 135.9 30.5 322 190-520 102-450 (461)
17 PF10508 Proteasom_PSMB: Prote 99.7 1.6E-12 3.4E-17 139.9 39.1 366 155-528 43-434 (503)
18 PF10508 Proteasom_PSMB: Prote 99.6 7.2E-13 1.6E-17 142.5 34.7 335 148-487 75-436 (503)
19 KOG1222 Kinesin associated pro 99.6 2.5E-12 5.4E-17 128.8 30.9 375 145-525 255-675 (791)
20 KOG1222 Kinesin associated pro 99.6 6.3E-13 1.4E-17 133.0 25.9 325 208-543 279-607 (791)
21 KOG4500 Rho/Rac GTPase guanine 99.6 1.3E-12 2.8E-17 129.4 24.7 381 152-535 89-499 (604)
22 KOG4500 Rho/Rac GTPase guanine 99.5 2.2E-12 4.7E-17 127.8 24.6 347 188-540 83-459 (604)
23 PF04826 Arm_2: Armadillo-like 99.5 1.4E-12 2.9E-17 126.6 21.9 194 189-389 9-205 (254)
24 PF04826 Arm_2: Armadillo-like 99.5 1.2E-11 2.6E-16 120.0 22.0 218 273-495 9-230 (254)
25 PRK09687 putative lyase; Provi 99.4 5.6E-11 1.2E-15 117.8 24.4 253 151-467 24-278 (280)
26 PRK09687 putative lyase; Provi 99.4 1.1E-10 2.4E-15 115.8 24.3 255 191-509 22-277 (280)
27 PRK13800 putative oxidoreducta 99.3 1.7E-09 3.6E-14 124.7 28.5 274 151-510 622-895 (897)
28 KOG1293 Proteins containing ar 99.2 1.2E-08 2.7E-13 106.7 28.7 399 153-556 12-538 (678)
29 cd00020 ARM Armadillo/beta-cat 99.2 3.3E-10 7E-15 97.5 13.8 118 271-389 2-120 (120)
30 cd00020 ARM Armadillo/beta-cat 99.2 3.7E-10 8E-15 97.2 13.8 117 228-346 2-120 (120)
31 PRK13800 putative oxidoreducta 99.2 1E-08 2.3E-13 118.2 28.9 269 190-543 619-887 (897)
32 cd00256 VATPase_H VATPase_H, r 99.2 8.6E-08 1.9E-12 99.2 31.5 321 150-473 53-427 (429)
33 PF01602 Adaptin_N: Adaptin N 99.2 3.3E-08 7.1E-13 108.1 30.1 373 131-547 55-436 (526)
34 cd00256 VATPase_H VATPase_H, r 99.1 3.3E-08 7.1E-13 102.3 24.4 275 153-429 104-424 (429)
35 PF01602 Adaptin_N: Adaptin N 99.1 6.9E-08 1.5E-12 105.6 28.5 333 145-513 109-443 (526)
36 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.6E-08 3.5E-13 102.6 21.5 228 192-420 55-304 (312)
37 KOG1293 Proteins containing ar 99.0 1.5E-07 3.3E-12 98.7 27.0 371 150-522 51-542 (678)
38 KOG0168 Putative ubiquitin fus 99.0 2.2E-07 4.7E-12 99.7 26.3 256 151-412 168-437 (1051)
39 KOG2171 Karyopherin (importin) 99.0 1.1E-06 2.4E-11 97.9 31.6 374 154-539 83-529 (1075)
40 KOG1789 Endocytosis protein RM 98.9 4.5E-07 9.7E-12 98.8 26.5 324 167-496 1742-2142(2235)
41 PF04564 U-box: U-box domain; 98.9 2.6E-11 5.7E-16 94.4 -4.3 66 53-140 1-66 (73)
42 PF03224 V-ATPase_H_N: V-ATPas 98.9 2.4E-07 5.3E-12 94.0 22.6 221 154-377 62-302 (312)
43 KOG0946 ER-Golgi vesicle-tethe 98.9 7.3E-06 1.6E-10 87.7 33.4 308 144-481 16-357 (970)
44 KOG2160 Armadillo/beta-catenin 98.9 1.9E-07 4.1E-12 92.4 19.7 191 289-479 96-290 (342)
45 PF05536 Neurochondrin: Neuroc 98.9 4.8E-06 1E-10 90.1 32.5 379 150-535 5-460 (543)
46 KOG2160 Armadillo/beta-catenin 98.8 2.6E-07 5.6E-12 91.4 19.1 184 247-430 95-282 (342)
47 PTZ00429 beta-adaptin; Provisi 98.8 1.2E-05 2.6E-10 89.6 34.1 332 151-518 33-366 (746)
48 KOG2973 Uncharacterized conser 98.7 3.1E-06 6.8E-11 81.6 22.0 290 237-549 5-309 (353)
49 KOG0168 Putative ubiquitin fus 98.7 9.3E-07 2E-11 95.0 19.9 223 316-542 210-442 (1051)
50 KOG2759 Vacuolar H+-ATPase V1 98.7 2.1E-05 4.6E-10 79.1 27.9 323 150-473 65-440 (442)
51 KOG2759 Vacuolar H+-ATPase V1 98.7 3.2E-06 6.9E-11 84.9 21.1 230 199-430 163-438 (442)
52 PTZ00429 beta-adaptin; Provisi 98.7 8.9E-05 1.9E-09 82.7 34.7 255 149-430 139-397 (746)
53 KOG3678 SARM protein (with ste 98.6 2.8E-06 6.1E-11 85.8 19.1 264 186-471 174-452 (832)
54 KOG4413 26S proteasome regulat 98.5 6.1E-05 1.3E-09 73.3 24.6 337 150-489 82-457 (524)
55 KOG2171 Karyopherin (importin) 98.4 0.00043 9.4E-09 77.8 30.3 323 159-493 215-567 (1075)
56 KOG2973 Uncharacterized conser 98.4 0.00015 3.3E-09 70.2 23.1 295 151-474 4-318 (353)
57 KOG2023 Nuclear transport rece 98.3 3.3E-05 7.2E-10 81.4 18.7 310 149-472 127-506 (885)
58 TIGR02270 conserved hypothetic 98.3 0.00036 7.7E-09 72.9 24.9 216 193-477 87-302 (410)
59 KOG3678 SARM protein (with ste 98.3 5.1E-05 1.1E-09 76.9 17.8 254 269-541 173-438 (832)
60 KOG1789 Endocytosis protein RM 98.2 0.00057 1.2E-08 75.5 25.9 302 168-472 1402-1884(2235)
61 KOG2023 Nuclear transport rece 98.2 0.00013 2.8E-09 77.1 20.0 311 191-513 127-504 (885)
62 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00054 1.2E-08 70.7 24.5 294 171-470 4-363 (371)
63 KOG4646 Uncharacterized conser 98.2 1.4E-05 3.1E-10 67.8 10.5 132 236-367 17-149 (173)
64 KOG4413 26S proteasome regulat 98.2 0.00037 7.9E-09 68.0 20.6 268 244-513 91-376 (524)
65 TIGR02270 conserved hypothetic 98.2 0.00057 1.2E-08 71.4 23.3 246 190-516 52-298 (410)
66 KOG4646 Uncharacterized conser 98.2 4.1E-05 8.8E-10 65.1 11.9 133 192-326 16-150 (173)
67 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00017 3.7E-09 77.6 18.3 217 317-537 22-265 (970)
68 KOG0212 Uncharacterized conser 98.0 0.00022 4.9E-09 74.1 17.3 333 190-539 82-425 (675)
69 smart00504 Ubox Modified RING 98.0 3E-07 6.6E-12 69.5 -2.6 61 57-140 2-62 (63)
70 COG1413 FOG: HEAT repeat [Ener 98.0 0.0023 5.1E-08 65.6 23.8 247 150-469 43-302 (335)
71 KOG1242 Protein containing ada 97.9 0.0041 8.9E-08 66.0 24.6 319 151-497 135-466 (569)
72 KOG2734 Uncharacterized conser 97.9 0.0073 1.6E-07 61.5 24.4 258 211-471 103-400 (536)
73 PF00514 Arm: Armadillo/beta-c 97.9 2E-05 4.4E-10 53.7 4.3 40 181-220 1-40 (41)
74 KOG2734 Uncharacterized conser 97.8 0.004 8.6E-08 63.3 21.6 236 297-535 105-370 (536)
75 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0045 9.7E-08 64.0 22.4 231 236-471 26-269 (371)
76 PF05536 Neurochondrin: Neuroc 97.8 0.0011 2.3E-08 72.1 17.9 221 318-540 6-245 (543)
77 PF00514 Arm: Armadillo/beta-c 97.8 6.4E-05 1.4E-09 51.2 5.2 41 431-471 1-41 (41)
78 KOG1060 Vesicle coat complex A 97.7 0.008 1.7E-07 65.2 22.9 173 153-348 38-211 (968)
79 KOG1062 Vesicle coat complex A 97.7 0.012 2.7E-07 64.0 24.3 361 143-527 135-562 (866)
80 KOG1241 Karyopherin (importin) 97.7 0.0041 8.8E-08 67.2 20.6 302 147-454 360-692 (859)
81 KOG1077 Vesicle coat complex A 97.7 0.032 7E-07 60.0 26.8 344 148-528 109-502 (938)
82 KOG1242 Protein containing ada 97.7 0.017 3.7E-07 61.5 24.7 322 192-543 96-432 (569)
83 COG1413 FOG: HEAT repeat [Ener 97.7 0.008 1.7E-07 61.7 21.8 213 192-466 43-268 (335)
84 COG5240 SEC21 Vesicle coat com 97.7 0.026 5.7E-07 59.3 24.6 269 172-470 249-554 (898)
85 PF10165 Ric8: Guanine nucleot 97.6 0.0067 1.5E-07 64.5 20.4 249 180-430 10-337 (446)
86 PF12348 CLASP_N: CLASP N term 97.6 0.0014 3E-08 63.3 14.1 181 160-346 17-206 (228)
87 KOG4151 Myosin assembly protei 97.6 0.0035 7.6E-08 68.3 17.9 236 223-466 494-736 (748)
88 KOG1062 Vesicle coat complex A 97.5 0.087 1.9E-06 57.7 27.3 283 150-470 107-413 (866)
89 KOG1241 Karyopherin (importin) 97.5 0.028 6.1E-07 61.0 23.3 312 192-513 129-476 (859)
90 PF13646 HEAT_2: HEAT repeats; 97.5 0.00081 1.8E-08 54.1 9.4 85 194-300 1-87 (88)
91 KOG1061 Vesicle coat complex A 97.4 0.024 5.3E-07 61.7 21.8 291 149-471 120-415 (734)
92 PF10165 Ric8: Guanine nucleot 97.4 0.032 7E-07 59.4 22.9 259 213-474 2-340 (446)
93 PF13646 HEAT_2: HEAT repeats; 97.4 0.0012 2.7E-08 53.0 9.2 87 278-385 1-88 (88)
94 KOG0212 Uncharacterized conser 97.4 0.0099 2.2E-07 62.3 17.0 233 192-434 167-410 (675)
95 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.013 2.7E-07 57.4 16.5 230 199-429 156-427 (432)
96 KOG1517 Guanine nucleotide bin 97.3 0.0074 1.6E-07 67.3 16.5 223 167-430 487-732 (1387)
97 KOG2259 Uncharacterized conser 97.3 0.0056 1.2E-07 65.1 15.1 221 236-473 199-441 (823)
98 COG5369 Uncharacterized conser 97.2 0.0023 5E-08 66.4 10.1 272 188-470 427-740 (743)
99 KOG2259 Uncharacterized conser 97.1 0.0055 1.2E-07 65.2 12.2 255 148-428 195-473 (823)
100 KOG1517 Guanine nucleotide bin 97.1 0.015 3.3E-07 64.9 16.0 180 294-473 485-673 (1387)
101 KOG1061 Vesicle coat complex A 97.1 0.024 5.1E-07 61.8 17.2 284 151-462 14-299 (734)
102 KOG1824 TATA-binding protein-i 97.1 0.1 2.2E-06 58.2 21.8 189 317-519 857-1100(1233)
103 KOG1077 Vesicle coat complex A 97.0 0.34 7.3E-06 52.5 24.6 275 197-496 116-416 (938)
104 smart00185 ARM Armadillo/beta- 97.0 0.0016 3.5E-08 43.9 5.2 39 182-220 2-40 (41)
105 PF11841 DUF3361: Domain of un 97.0 0.02 4.3E-07 51.1 12.8 128 311-439 5-142 (160)
106 KOG1059 Vesicle coat complex A 97.0 0.43 9.3E-06 51.9 24.7 228 144-389 138-401 (877)
107 KOG1060 Vesicle coat complex A 97.0 0.73 1.6E-05 50.7 26.6 139 148-304 69-208 (968)
108 COG5215 KAP95 Karyopherin (imp 96.9 0.58 1.3E-05 49.7 24.7 302 198-513 100-436 (858)
109 PF12348 CLASP_N: CLASP N term 96.9 0.01 2.2E-07 57.2 11.6 179 245-430 17-206 (228)
110 smart00185 ARM Armadillo/beta- 96.8 0.0029 6.2E-08 42.7 5.1 39 432-470 2-40 (41)
111 COG5369 Uncharacterized conser 96.8 0.0054 1.2E-07 63.8 8.9 187 295-482 408-605 (743)
112 KOG1824 TATA-binding protein-i 96.8 0.06 1.3E-06 59.9 17.2 265 154-430 9-286 (1233)
113 COG5231 VMA13 Vacuolar H+-ATPa 96.8 0.21 4.4E-06 49.2 18.7 224 248-471 162-428 (432)
114 PF11841 DUF3361: Domain of un 96.7 0.039 8.4E-07 49.3 12.7 128 352-479 4-141 (160)
115 KOG3036 Protein involved in ce 96.6 0.29 6.3E-06 46.5 18.2 148 252-399 96-257 (293)
116 KOG0211 Protein phosphatase 2A 96.6 0.5 1.1E-05 53.1 23.0 309 146-471 232-547 (759)
117 KOG0213 Splicing factor 3b, su 96.5 0.14 3.1E-06 55.6 17.2 290 152-470 801-1106(1172)
118 COG5215 KAP95 Karyopherin (imp 96.5 1.5 3.3E-05 46.6 24.2 314 147-472 90-438 (858)
119 PF04063 DUF383: Domain of unk 96.4 0.04 8.7E-07 51.3 11.2 113 329-441 7-143 (192)
120 KOG1059 Vesicle coat complex A 96.4 0.15 3.3E-06 55.3 16.4 215 236-472 145-366 (877)
121 COG5181 HSH155 U2 snRNP splice 96.3 0.21 4.5E-06 53.3 16.7 289 151-470 605-911 (975)
122 PF04078 Rcd1: Cell differenti 96.3 0.33 7.2E-06 46.9 16.9 193 205-399 8-228 (262)
123 PF13513 HEAT_EZ: HEAT-like re 96.3 0.012 2.6E-07 42.8 5.5 55 206-262 1-55 (55)
124 PF09759 Atx10homo_assoc: Spin 96.2 0.025 5.4E-07 46.6 7.7 65 377-441 3-71 (102)
125 PF13513 HEAT_EZ: HEAT-like re 96.2 0.017 3.6E-07 41.9 6.1 55 290-344 1-55 (55)
126 KOG4151 Myosin assembly protei 96.2 0.21 4.6E-06 54.9 16.7 216 185-408 497-719 (748)
127 PF05004 IFRD: Interferon-rela 96.1 0.95 2.1E-05 45.7 20.3 194 146-345 39-256 (309)
128 KOG3036 Protein involved in ce 96.1 0.66 1.4E-05 44.2 17.3 145 167-314 96-256 (293)
129 KOG1058 Vesicle coat complex C 96.1 1.3 2.7E-05 48.7 21.4 317 153-513 23-345 (948)
130 PF13764 E3_UbLigase_R4: E3 ub 96.1 1.8 3.9E-05 49.1 23.8 242 187-433 112-409 (802)
131 PF09759 Atx10homo_assoc: Spin 96.0 0.042 9.2E-07 45.3 8.1 67 333-399 2-70 (102)
132 COG5096 Vesicle coat complex, 96.0 1.1 2.3E-05 50.1 21.2 169 159-347 28-196 (757)
133 PF04063 DUF383: Domain of unk 96.0 0.054 1.2E-06 50.5 9.7 122 206-327 9-157 (192)
134 KOG0213 Splicing factor 3b, su 95.9 0.8 1.7E-05 50.1 18.9 255 194-474 801-1068(1172)
135 COG5181 HSH155 U2 snRNP splice 95.9 0.78 1.7E-05 49.1 18.5 254 193-474 605-873 (975)
136 KOG2611 Neurochondrin/leucine- 95.5 2.5 5.5E-05 44.1 20.1 226 153-388 14-273 (698)
137 KOG1058 Vesicle coat complex C 95.5 5.2 0.00011 44.1 26.2 364 35-458 33-412 (948)
138 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.053 1.1E-06 45.9 6.8 70 360-429 44-114 (119)
139 PF07814 WAPL: Wings apart-lik 95.5 1.3 2.8E-05 46.0 18.5 240 147-389 18-355 (361)
140 KOG1078 Vesicle coat complex C 95.2 1.7 3.7E-05 47.9 18.9 262 160-470 255-531 (865)
141 PF05004 IFRD: Interferon-rela 95.2 2.9 6.4E-05 42.2 19.8 189 237-429 45-256 (309)
142 KOG4535 HEAT and armadillo rep 95.2 0.27 5.9E-06 51.0 11.9 294 165-472 270-604 (728)
143 PF04078 Rcd1: Cell differenti 95.1 2.8 6E-05 40.7 18.0 220 247-469 7-260 (262)
144 PF13764 E3_UbLigase_R4: E3 ub 95.1 2.1 4.5E-05 48.6 19.8 183 271-456 112-333 (802)
145 KOG1943 Beta-tubulin folding c 94.9 4.8 0.0001 46.2 21.8 250 191-465 340-605 (1133)
146 KOG0567 HEAT repeat-containing 94.9 1.8 3.8E-05 41.9 15.8 198 188-428 63-278 (289)
147 COG5096 Vesicle coat complex, 94.8 0.85 1.8E-05 50.9 15.4 143 149-306 54-196 (757)
148 PF08569 Mo25: Mo25-like; Int 94.8 5.6 0.00012 40.6 24.7 219 228-452 71-307 (335)
149 KOG2274 Predicted importin 9 [ 94.8 3.9 8.5E-05 46.0 20.1 255 236-497 446-721 (1005)
150 PRK14707 hypothetical protein; 94.7 16 0.00034 45.3 29.9 386 165-558 809-1210(2710)
151 PRK14707 hypothetical protein; 94.6 16 0.00035 45.3 29.4 377 166-550 222-609 (2710)
152 COG5240 SEC21 Vesicle coat com 94.5 8.1 0.00017 41.5 21.3 171 331-521 278-450 (898)
153 KOG1240 Protein kinase contain 94.4 1.9 4.1E-05 49.9 17.0 280 163-471 436-725 (1431)
154 PF06025 DUF913: Domain of Unk 94.3 6.8 0.00015 40.8 20.3 200 254-453 3-258 (379)
155 PF07814 WAPL: Wings apart-lik 94.3 1.9 4.1E-05 44.7 16.1 271 194-473 23-357 (361)
156 KOG1943 Beta-tubulin folding c 94.2 13 0.00029 42.8 24.8 277 148-430 339-705 (1133)
157 KOG0915 Uncharacterized conser 94.1 9.6 0.00021 45.5 22.2 286 145-438 989-1316(1702)
158 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.35 7.6E-06 39.7 8.1 65 276-343 27-93 (97)
159 KOG0915 Uncharacterized conser 94.0 4.1 9E-05 48.3 19.1 301 197-518 823-1164(1702)
160 KOG3665 ZYG-1-like serine/thre 94.0 9.6 0.00021 43.1 22.0 180 340-538 494-679 (699)
161 KOG0567 HEAT repeat-containing 94.0 6.4 0.00014 38.1 19.3 243 163-470 18-279 (289)
162 PF11698 V-ATPase_H_C: V-ATPas 93.9 0.17 3.7E-06 42.9 6.2 71 150-220 43-114 (119)
163 KOG2999 Regulator of Rac1, req 93.9 2.4 5.3E-05 45.0 15.6 156 236-392 84-246 (713)
164 PF06371 Drf_GBD: Diaphanous G 93.9 1 2.2E-05 41.7 12.2 79 351-429 99-186 (187)
165 PF08569 Mo25: Mo25-like; Int 93.9 8.4 0.00018 39.3 23.2 206 270-479 70-291 (335)
166 KOG0211 Protein phosphatase 2A 93.9 11 0.00024 42.6 21.9 230 192-430 316-547 (759)
167 KOG4642 Chaperone-dependent E3 93.9 0.029 6.3E-07 52.9 1.6 85 32-138 181-271 (284)
168 KOG1248 Uncharacterized conser 93.9 5.3 0.00011 46.3 19.3 230 191-430 649-898 (1176)
169 KOG1248 Uncharacterized conser 93.7 5.5 0.00012 46.2 19.1 216 247-471 666-898 (1176)
170 PF08045 CDC14: Cell division 93.7 1.3 2.8E-05 43.0 12.5 96 376-471 107-207 (257)
171 PF11707 Npa1: Ribosome 60S bi 93.6 6.4 0.00014 40.2 18.3 163 312-475 52-241 (330)
172 PF11789 zf-Nse: Zinc-finger o 93.4 0.0043 9.4E-08 45.4 -3.7 40 55-114 10-52 (57)
173 PF08045 CDC14: Cell division 93.3 1.6 3.5E-05 42.4 12.6 97 293-389 108-207 (257)
174 KOG1240 Protein kinase contain 93.3 3.4 7.5E-05 47.8 16.7 255 248-513 436-724 (1431)
175 PF12719 Cnd3: Nuclear condens 93.1 6.2 0.00013 39.7 17.2 149 192-349 26-188 (298)
176 PF11701 UNC45-central: Myosin 93.1 1.4 3E-05 39.8 11.2 142 321-468 7-156 (157)
177 KOG2999 Regulator of Rac1, req 93.1 2.2 4.8E-05 45.2 13.7 161 278-439 85-253 (713)
178 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.85 1.8E-05 37.4 8.7 90 167-262 3-94 (97)
179 KOG1832 HIV-1 Vpr-binding prot 92.9 12 0.00027 42.1 19.5 308 168-481 371-783 (1516)
180 PF05918 API5: Apoptosis inhib 92.5 3.1 6.6E-05 45.1 14.5 122 246-385 33-158 (556)
181 PF12717 Cnd1: non-SMC mitotic 92.3 9.1 0.0002 35.2 16.6 93 163-265 1-93 (178)
182 PF14668 RICTOR_V: Rapamycin-i 92.2 0.98 2.1E-05 34.8 7.6 66 377-442 4-70 (73)
183 PF06371 Drf_GBD: Diaphanous G 91.7 1.4 3.1E-05 40.7 9.9 109 151-263 67-186 (187)
184 PF11701 UNC45-central: Myosin 91.7 0.98 2.1E-05 40.7 8.4 145 361-510 5-155 (157)
185 PF12717 Cnd1: non-SMC mitotic 91.6 11 0.00024 34.7 16.1 93 248-347 1-93 (178)
186 KOG1832 HIV-1 Vpr-binding prot 91.3 16 0.00036 41.2 18.1 327 207-538 368-799 (1516)
187 KOG2062 26S proteasome regulat 91.1 19 0.00041 39.9 18.3 126 316-458 553-681 (929)
188 KOG4464 Signaling protein RIC- 91.1 17 0.00036 37.6 16.8 263 279-541 48-371 (532)
189 PF12719 Cnd3: Nuclear condens 91.0 8.3 0.00018 38.7 15.3 160 372-540 39-211 (298)
190 KOG4653 Uncharacterized conser 91.0 5.5 0.00012 44.6 14.3 177 284-471 735-918 (982)
191 COG5209 RCD1 Uncharacterized p 90.9 4.2 9.1E-05 38.3 11.5 148 252-399 117-278 (315)
192 PF06025 DUF913: Domain of Unk 90.7 23 0.0005 36.9 22.1 128 228-357 100-243 (379)
193 PF02985 HEAT: HEAT repeat; I 90.7 0.39 8.5E-06 30.1 3.4 28 444-471 2-29 (31)
194 KOG2025 Chromosome condensatio 90.4 15 0.00033 40.5 16.7 104 277-385 86-189 (892)
195 PF14668 RICTOR_V: Rapamycin-i 90.3 1.8 3.8E-05 33.5 7.3 67 334-401 4-70 (73)
196 PF02985 HEAT: HEAT repeat; I 90.2 0.59 1.3E-05 29.3 3.9 29 402-430 1-29 (31)
197 PF12460 MMS19_C: RNAPII trans 89.6 24 0.00053 37.2 17.9 189 150-349 189-397 (415)
198 KOG2611 Neurochondrin/leucine- 89.5 6.8 0.00015 41.1 12.8 142 364-509 16-177 (698)
199 PF12460 MMS19_C: RNAPII trans 89.4 19 0.00042 38.0 17.0 186 236-431 190-395 (415)
200 KOG4535 HEAT and armadillo rep 89.1 1.1 2.3E-05 46.8 6.7 57 374-430 544-603 (728)
201 PF08324 PUL: PUL domain; Int 89.1 5.2 0.00011 39.4 11.8 169 211-379 82-264 (268)
202 PF12031 DUF3518: Domain of un 88.7 1 2.2E-05 42.9 5.9 83 375-457 139-231 (257)
203 KOG0414 Chromosome condensatio 88.4 4.7 0.0001 46.7 11.8 139 318-470 920-1063(1251)
204 KOG1820 Microtubule-associated 87.7 14 0.0003 42.2 15.0 183 151-345 254-442 (815)
205 KOG4653 Uncharacterized conser 87.6 26 0.00055 39.7 16.3 173 206-389 741-918 (982)
206 PF12031 DUF3518: Domain of un 86.8 0.82 1.8E-05 43.6 4.1 87 457-543 139-233 (257)
207 KOG1788 Uncharacterized conser 86.5 10 0.00022 43.5 12.6 211 171-389 663-982 (2799)
208 COG5209 RCD1 Uncharacterized p 86.1 12 0.00026 35.4 11.1 143 168-313 118-276 (315)
209 KOG2274 Predicted importin 9 [ 85.7 72 0.0016 36.5 21.6 256 164-431 505-781 (1005)
210 PF08167 RIX1: rRNA processing 85.3 12 0.00026 34.0 10.9 110 317-430 25-143 (165)
211 KOG2956 CLIP-associating prote 84.4 59 0.0013 34.3 18.1 182 150-344 286-475 (516)
212 PF05918 API5: Apoptosis inhib 83.4 75 0.0016 34.8 21.0 141 150-305 59-207 (556)
213 KOG1020 Sister chromatid cohes 82.7 42 0.0009 40.5 15.8 125 295-431 796-922 (1692)
214 KOG4464 Signaling protein RIC- 82.2 20 0.00043 37.1 11.6 134 362-495 48-198 (532)
215 PF08324 PUL: PUL domain; Int 81.9 19 0.00041 35.4 11.8 171 252-422 80-266 (268)
216 KOG1820 Microtubule-associated 80.3 33 0.00072 39.3 13.9 176 287-473 264-445 (815)
217 KOG1967 DNA repair/transcripti 80.3 30 0.00066 39.4 13.2 140 359-507 867-1017(1030)
218 cd03569 VHS_Hrs_Vps27p VHS dom 79.8 9.8 0.00021 33.6 7.9 73 317-389 41-114 (142)
219 KOG2062 26S proteasome regulat 79.3 75 0.0016 35.6 15.4 97 359-470 554-652 (929)
220 PF14726 RTTN_N: Rotatin, an a 79.3 18 0.00038 29.7 8.5 93 165-259 2-95 (98)
221 KOG3665 ZYG-1-like serine/thre 78.4 39 0.00084 38.3 13.8 193 173-385 494-693 (699)
222 KOG0414 Chromosome condensatio 78.1 19 0.00041 42.1 11.0 140 193-347 920-1065(1251)
223 cd03568 VHS_STAM VHS domain fa 77.9 7.8 0.00017 34.3 6.6 72 401-472 37-111 (144)
224 cd03561 VHS VHS domain family; 77.5 14 0.00031 32.1 8.2 74 401-474 37-115 (133)
225 KOG2956 CLIP-associating prote 77.1 1E+02 0.0023 32.6 18.8 169 251-429 303-476 (516)
226 COG5098 Chromosome condensatio 76.5 38 0.00082 37.5 12.2 197 330-550 909-1109(1128)
227 KOG1788 Uncharacterized conser 76.5 53 0.0012 38.1 13.6 279 160-452 477-784 (2799)
228 cd03568 VHS_STAM VHS domain fa 75.9 16 0.00035 32.3 8.1 73 317-389 37-110 (144)
229 cd03569 VHS_Hrs_Vps27p VHS dom 75.6 14 0.0003 32.6 7.6 73 149-221 40-114 (142)
230 cd03561 VHS VHS domain family; 75.0 21 0.00044 31.1 8.5 73 149-221 36-112 (133)
231 KOG2032 Uncharacterized conser 74.5 45 0.00098 35.4 11.9 158 275-438 253-423 (533)
232 KOG2032 Uncharacterized conser 74.2 1.3E+02 0.0028 32.2 18.3 154 149-306 257-416 (533)
233 PF12530 DUF3730: Protein of u 72.2 96 0.0021 29.9 19.1 129 286-430 11-151 (234)
234 smart00288 VHS Domain present 71.8 21 0.00045 31.1 7.7 72 318-389 38-111 (133)
235 PF12530 DUF3730: Protein of u 71.8 98 0.0021 29.8 19.3 136 195-346 3-151 (234)
236 PF08167 RIX1: rRNA processing 71.4 75 0.0016 28.7 11.6 116 145-264 20-143 (165)
237 smart00288 VHS Domain present 70.8 22 0.00048 31.0 7.6 73 149-221 36-111 (133)
238 KOG0301 Phospholipase A2-activ 70.4 1E+02 0.0022 34.1 13.6 163 246-412 555-727 (745)
239 PF01347 Vitellogenin_N: Lipop 70.1 1E+02 0.0023 34.3 14.9 187 192-412 395-603 (618)
240 PF10363 DUF2435: Protein of u 70.1 25 0.00054 28.5 7.2 70 279-349 6-75 (92)
241 COG5116 RPN2 26S proteasome re 69.8 25 0.00053 37.9 8.7 63 361-429 587-649 (926)
242 PF14726 RTTN_N: Rotatin, an a 69.7 46 0.001 27.3 8.7 72 395-466 23-95 (98)
243 cd03567 VHS_GGA VHS domain fam 69.5 26 0.00057 30.8 7.8 72 149-220 37-115 (139)
244 cd03567 VHS_GGA VHS domain fam 69.4 21 0.00046 31.3 7.2 70 401-470 38-115 (139)
245 COG5218 YCG1 Chromosome conden 68.2 1.1E+02 0.0024 33.4 13.1 106 361-477 93-202 (885)
246 KOG2025 Chromosome condensatio 67.9 2.1E+02 0.0046 32.1 21.0 129 207-343 61-190 (892)
247 PRK09169 hypothetical protein; 67.3 3.7E+02 0.008 34.6 28.9 53 485-537 500-553 (2316)
248 TIGR00599 rad18 DNA repair pro 67.2 2.1 4.5E-05 44.5 0.4 72 45-139 15-86 (397)
249 PF05659 RPW8: Arabidopsis bro 67.1 7.9 0.00017 34.4 4.1 72 15-87 18-89 (147)
250 PF10363 DUF2435: Protein of u 65.1 21 0.00046 28.9 5.9 69 151-221 4-72 (92)
251 PLN03208 E3 ubiquitin-protein 64.2 1.7 3.8E-05 40.0 -0.7 61 53-135 15-90 (193)
252 KOG1967 DNA repair/transcripti 63.9 30 0.00064 39.5 8.4 149 191-340 866-1018(1030)
253 PF11865 DUF3385: Domain of un 62.7 90 0.0019 28.1 10.2 143 317-470 10-156 (160)
254 COG5113 UFD2 Ubiquitin fusion 62.7 4 8.8E-05 43.9 1.5 89 27-138 821-914 (929)
255 PF00790 VHS: VHS domain; Int 61.2 29 0.00063 30.4 6.6 73 149-221 41-118 (140)
256 PF14225 MOR2-PAG1_C: Cell mor 59.6 1.8E+02 0.004 28.5 19.9 217 151-388 8-253 (262)
257 KOG2933 Uncharacterized conser 59.6 1.2E+02 0.0026 30.3 10.9 144 147-302 85-231 (334)
258 KOG1078 Vesicle coat complex C 59.1 3.2E+02 0.0068 31.1 20.5 60 324-389 252-311 (865)
259 PF11865 DUF3385: Domain of un 58.6 1.2E+02 0.0026 27.3 10.2 143 236-387 11-155 (160)
260 PF00790 VHS: VHS domain; Int 57.8 34 0.00073 30.0 6.4 73 317-389 42-118 (140)
261 PF14225 MOR2-PAG1_C: Cell mor 57.0 2E+02 0.0044 28.2 19.2 178 276-470 60-253 (262)
262 COG5218 YCG1 Chromosome conden 56.5 3.1E+02 0.0067 30.2 16.3 108 191-307 90-198 (885)
263 KOG2137 Protein kinase [Signal 55.6 92 0.002 34.7 10.3 134 190-330 387-521 (700)
264 PF08216 CTNNBL: Catenin-beta- 55.5 19 0.00042 30.0 4.1 43 376-418 62-104 (108)
265 PF11707 Npa1: Ribosome 60S bi 54.7 2.5E+02 0.0054 28.6 22.6 155 278-433 58-240 (330)
266 KOG1991 Nuclear transport rece 54.7 4.1E+02 0.0088 31.1 21.3 295 192-493 410-731 (1010)
267 KOG1020 Sister chromatid cohes 54.3 3E+02 0.0066 33.7 14.5 102 277-389 817-921 (1692)
268 KOG4231 Intracellular membrane 52.9 11 0.00024 39.8 2.7 69 278-346 330-399 (763)
269 KOG0301 Phospholipase A2-activ 52.8 3.7E+02 0.008 30.0 15.7 163 161-328 555-727 (745)
270 PF10474 DUF2451: Protein of u 51.4 19 0.00041 34.8 4.0 78 23-108 91-168 (234)
271 COG5098 Chromosome condensatio 51.3 1.2E+02 0.0025 33.9 10.0 105 361-471 301-415 (1128)
272 KOG1243 Protein kinase [Genera 50.1 3.9E+02 0.0084 30.0 13.8 256 153-428 257-513 (690)
273 PF14500 MMS19_N: Dos2-interac 46.9 2.9E+02 0.0063 27.1 17.0 216 154-389 3-237 (262)
274 PF11791 Aconitase_B_N: Aconit 46.6 52 0.0011 29.2 5.5 29 278-306 96-124 (154)
275 PLN03205 ATR interacting prote 45.5 1.2E+02 0.0027 31.4 8.6 119 278-396 325-453 (652)
276 PF12830 Nipped-B_C: Sister ch 45.0 1.6E+02 0.0034 27.2 9.0 115 402-525 9-134 (187)
277 PF13251 DUF4042: Domain of un 44.3 2.1E+02 0.0046 26.4 9.5 66 362-430 104-174 (182)
278 PF01347 Vitellogenin_N: Lipop 44.0 4.2E+02 0.0091 29.5 13.9 166 236-427 396-586 (618)
279 KOG0823 Predicted E3 ubiquitin 43.8 5.3 0.00012 37.7 -1.0 56 55-132 46-103 (230)
280 PF15227 zf-C3HC4_4: zinc fing 42.0 1.8 3.9E-05 29.4 -3.3 37 59-114 1-40 (42)
281 PF07923 N1221: N1221-like pro 39.9 74 0.0016 31.8 6.4 60 144-203 54-127 (293)
282 KOG2042 Ubiquitin fusion degra 38.4 9.5 0.00021 43.7 -0.3 88 29-139 839-931 (943)
283 smart00638 LPD_N Lipoprotein N 38.0 5.9E+02 0.013 28.1 19.3 150 236-412 394-559 (574)
284 smart00808 FABD F-actin bindin 37.8 79 0.0017 27.0 5.1 46 57-117 20-68 (126)
285 cd00197 VHS_ENTH_ANTH VHS, ENT 37.2 2.1E+02 0.0046 23.8 7.9 72 148-219 35-113 (115)
286 cd03572 ENTH_epsin_related ENT 37.0 1.3E+02 0.0028 25.8 6.4 74 147-220 35-118 (122)
287 cd03565 VHS_Tom1 VHS domain fa 36.9 1.5E+02 0.0032 26.1 7.1 70 402-471 39-115 (141)
288 KOG2038 CAATT-binding transcri 36.8 2.1E+02 0.0046 32.3 9.4 103 401-513 304-408 (988)
289 PF14666 RICTOR_M: Rapamycin-i 35.7 4E+02 0.0088 25.5 11.2 144 291-470 79-224 (226)
290 cd03572 ENTH_epsin_related ENT 35.0 1.8E+02 0.0038 25.0 6.9 70 402-471 39-119 (122)
291 cd00197 VHS_ENTH_ANTH VHS, ENT 34.8 2.3E+02 0.0049 23.6 7.7 68 402-469 38-113 (115)
292 KOG4172 Predicted E3 ubiquitin 34.1 27 0.00058 25.0 1.5 18 56-73 43-60 (62)
293 KOG2137 Protein kinase [Signal 33.6 4.7E+02 0.01 29.4 11.4 141 314-460 386-526 (700)
294 PF10521 DUF2454: Protein of u 33.5 3.9E+02 0.0085 26.4 10.4 69 236-304 120-202 (282)
295 PF06012 DUF908: Domain of Unk 33.4 2.1E+02 0.0046 29.1 8.6 74 376-449 238-323 (329)
296 PF11791 Aconitase_B_N: Aconit 33.2 2E+02 0.0042 25.7 7.0 27 361-388 96-122 (154)
297 PF04499 SAPS: SIT4 phosphatas 33.2 3.5E+02 0.0075 29.2 10.4 81 350-430 53-148 (475)
298 COG5116 RPN2 26S proteasome re 32.9 7E+02 0.015 27.5 15.9 99 358-470 550-649 (926)
299 cd03565 VHS_Tom1 VHS domain fa 32.7 2.9E+02 0.0063 24.2 8.2 73 149-221 37-115 (141)
300 KOG1243 Protein kinase [Genera 31.1 2.1E+02 0.0046 31.9 8.3 149 314-474 327-479 (690)
301 PF13877 RPAP3_C: Potential Mo 30.7 21 0.00046 28.8 0.7 52 25-76 6-59 (94)
302 PF04869 Uso1_p115_head: Uso1 30.4 5.9E+02 0.013 25.8 13.0 148 401-549 34-221 (312)
303 PF06012 DUF908: Domain of Unk 30.2 2.2E+02 0.0049 28.9 8.2 76 292-367 238-324 (329)
304 PF01365 RYDR_ITPR: RIH domain 30.2 2.6E+02 0.0056 26.1 8.1 117 351-472 35-170 (207)
305 KOG1087 Cytosolic sorting prot 29.8 1.5E+02 0.0033 31.7 6.9 72 317-388 38-111 (470)
306 PF14663 RasGEF_N_2: Rapamycin 29.4 1.4E+02 0.003 25.2 5.4 53 402-456 9-61 (115)
307 PF04064 DUF384: Domain of unk 29.3 92 0.002 22.8 3.7 42 509-550 2-44 (58)
308 PF01365 RYDR_ITPR: RIH domain 29.1 2.4E+02 0.0053 26.3 7.7 117 268-390 35-170 (207)
309 KOG1002 Nucleotide excision re 28.7 94 0.002 33.2 5.0 116 40-189 504-643 (791)
310 KOG1566 Conserved protein Mo25 28.6 6.3E+02 0.014 25.6 18.3 208 270-480 73-295 (342)
311 PF08216 CTNNBL: Catenin-beta- 28.1 70 0.0015 26.7 3.2 42 209-252 63-104 (108)
312 PF04821 TIMELESS: Timeless pr 27.9 5.9E+02 0.013 25.0 11.8 42 432-473 168-210 (266)
313 KOG2225 Proteins containing re 27.9 3.5E+02 0.0077 28.4 8.7 138 169-332 372-523 (695)
314 PF14666 RICTOR_M: Rapamycin-i 27.7 5.5E+02 0.012 24.6 10.9 81 374-454 78-176 (226)
315 PF06685 DUF1186: Protein of u 27.6 5.8E+02 0.013 24.8 11.9 118 314-446 70-201 (249)
316 KOG4231 Intracellular membrane 27.4 93 0.002 33.2 4.7 71 361-431 329-400 (763)
317 KOG1410 Nuclear transport rece 27.3 9.4E+02 0.02 27.2 19.2 272 202-495 16-312 (1082)
318 KOG0311 Predicted E3 ubiquitin 27.2 22 0.00048 35.8 0.2 44 55-116 42-85 (381)
319 PHA02929 N1R/p28-like protein; 27.0 36 0.00079 32.8 1.6 67 41-121 156-225 (238)
320 PF13445 zf-RING_UBOX: RING-ty 26.8 12 0.00026 25.6 -1.3 35 59-109 1-35 (43)
321 KOG2933 Uncharacterized conser 26.7 4.1E+02 0.0088 26.8 8.7 108 361-475 90-203 (334)
322 PF08506 Cse1: Cse1; InterPro 26.5 7.4E+02 0.016 25.7 11.8 128 332-466 226-370 (370)
323 COG5537 IRR1 Cohesin [Cell div 26.2 8.3E+02 0.018 27.1 11.4 135 159-305 284-422 (740)
324 PF04499 SAPS: SIT4 phosphatas 25.6 2.6E+02 0.0056 30.2 7.9 40 433-472 53-93 (475)
325 cd08783 Death_MALT1 Death doma 25.2 75 0.0016 25.8 2.7 29 527-555 8-39 (97)
326 PF08389 Xpo1: Exportin 1-like 25.1 4.3E+02 0.0094 22.5 8.2 105 192-300 26-148 (148)
327 KOG0289 mRNA splicing factor [ 25.0 52 0.0011 34.2 2.3 50 59-130 3-52 (506)
328 PF03130 HEAT_PBS: PBS lyase H 24.3 88 0.0019 18.6 2.4 26 208-245 1-26 (27)
329 PF13923 zf-C3HC4_2: Zinc fing 24.1 5.5 0.00012 26.3 -3.3 36 59-114 1-37 (39)
330 cd08798 Death_NFkB2_p100 Death 24.0 57 0.0012 25.3 1.9 32 528-559 2-35 (76)
331 cd08050 TAF6 TATA Binding Prot 22.8 7.1E+02 0.015 25.5 10.3 110 236-345 211-339 (343)
332 PF10521 DUF2454: Protein of u 22.5 7.5E+02 0.016 24.4 11.2 31 192-222 119-149 (282)
333 PF08506 Cse1: Cse1; InterPro 22.5 8.8E+02 0.019 25.2 13.5 128 290-425 225-370 (370)
334 KOG0392 SNF2 family DNA-depend 21.9 1.5E+03 0.033 27.7 14.4 230 149-389 76-325 (1549)
335 PF05338 DUF717: Protein of un 21.1 64 0.0014 23.3 1.5 24 55-79 12-35 (55)
336 PF12726 SEN1_N: SEN1 N termin 20.7 1E+03 0.022 27.2 12.1 108 280-389 445-553 (727)
337 cd08050 TAF6 TATA Binding Prot 20.4 3.4E+02 0.0073 27.8 7.3 98 414-513 230-339 (343)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=355.28 Aligned_cols=394 Identities=22% Similarity=0.253 Sum_probs=339.0
Q ss_pred HHHHhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008560 147 AVRAESRNLITRLQIG--SAESKNSAMDSLLGLLQEDDKNVVIAVA-QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD 223 (561)
Q Consensus 147 ~~~~~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~ 223 (561)
.....+..+++.|+++ +++.|..|+..|+.+++++++||+.+.+ .|+||.|+.+|.++++.+++.|+.+|.+++.++
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e 89 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE 89 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 4467889999999977 7899999999999999999999999986 799999999999999999999999999999999
Q ss_pred cchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--c-hHHH-HHhcCCHHHHHHHHhcCCh---HHHHHH
Q 008560 224 SSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK--E-NARA-IGSRGGISSLLEICQAGTP---GSQAFA 296 (561)
Q Consensus 224 ~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~-~~~~-i~~~g~i~~Lv~ll~~~~~---~~~~~A 296 (561)
+++..|+..| ++++|+++|++|+.+.|+.|+++|++|+.++ + ++.. +...|+++.|+.++++++. ..+..+
T Consensus 90 ~nk~~Iv~~G--aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A 167 (2102)
T PLN03200 90 DLRVKVLLGG--CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167 (2102)
T ss_pred HHHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence 9999999999 9999999999999999999999999999874 3 4434 4569999999999998752 345778
Q ss_pred HHHHHHhhCCchhhH-HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHH
Q 008560 297 AGVLRNLAGFSEIKE-NFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVK 375 (561)
Q Consensus 297 ~~aL~nLs~~~~~r~-~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~ 375 (561)
+.+|+||+...+++. .+++.|+|+.|++++.++++..+.+|+.+|.+++.+.++.+..+++.|+|+.|++++.+++++.
T Consensus 168 v~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~ 247 (2102)
T PLN03200 168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVS 247 (2102)
T ss_pred HHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChH
Confidence 899999999998774 5679999999999999999999999999999999887778999999999999999998877778
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCC---------HHHHHHHHHHHHHHcCC-HH-----------
Q 008560 376 SLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGV---------LSVRIAAARAVSMLGIN-SK----------- 433 (561)
Q Consensus 376 ~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~---------~~~~~~A~~aL~~L~~~-~~----------- 433 (561)
+++.|+++|.+||. +++.+..+++.|+++.|++++...+ ...+++|+++|.|+|.. ..
T Consensus 248 VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s 327 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSES 327 (2102)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 99999999999998 7889999999999999999997544 34689999999998862 00
Q ss_pred H--------------------------------------------------------------------HHHHHhCCChH
Q 008560 434 A--------------------------------------------------------------------RKEMGECGCIG 445 (561)
Q Consensus 434 ~--------------------------------------------------------------------~~~i~~~g~i~ 445 (561)
. ++.+.+.|+++
T Consensus 328 ~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik 407 (2102)
T PLN03200 328 PRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKK 407 (2102)
T ss_pred cchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchh
Confidence 0 01122335566
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHH
Q 008560 446 PLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVA 524 (561)
Q Consensus 446 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~ 524 (561)
.|+.|+...+.++|..++.+|++|+.+..+....+.+.++++.|+++|.++.. ..++.++.+|.+++ ++++.+..|++
T Consensus 408 ~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~-~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSE-QQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66777776777899999999999997755555555677999999999987543 45778999999998 67788999999
Q ss_pred cCchHHHHHhhccCccchH
Q 008560 525 AGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 525 ~g~i~~L~~Ll~~~~~~ak 543 (561)
+|++++|++|+.++++..+
T Consensus 487 aGaIP~LV~LL~s~~~~iq 505 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAK 505 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHH
Confidence 9999999999998877665
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=339.10 Aligned_cols=388 Identities=24% Similarity=0.234 Sum_probs=327.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---Ccch-
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV---DSSK- 226 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~---~~~~- 226 (561)
.++.|+..|.+++...|..|+..|.+++.+ ++++..|+..|+||+|+.+|++++++.++.|+.+|.+|+.+ ++++
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 588899999999999999999989888766 67998999999999999999999999999999999999986 3444
Q ss_pred HHHHHhchhhHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCchHH-HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 227 HVLIAEGLLLLNHLIRVLESGS---GFAKERACVALQALSFSKENAR-AIGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
..++.+| ++++|+.+|++++ ..+++.++.+|.+|+..+++++ .+.+.|+++.|+.+++++++..+..|+.+|.+
T Consensus 138 ~I~v~~G--aVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~ 215 (2102)
T PLN03200 138 KIFSTEG--VVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLAR 215 (2102)
T ss_pred hhhhhcC--ChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4456799 9999999999984 3356788999999999988875 56789999999999999999999999999999
Q ss_pred hhCC-chhhHHHHhhhhHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC--------
Q 008560 303 LAGF-SEIKENFIEENAVMVLLGLVASGT-ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS-------- 372 (561)
Q Consensus 303 Ls~~-~~~r~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~-------- 372 (561)
++.. ++.+..++++|+|+.|+++|.+++ ..++++|+++|.||+.+++.+|..+++.|+++.|++++..++
T Consensus 216 Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~ 295 (2102)
T PLN03200 216 LMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEF 295 (2102)
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhcccc
Confidence 9876 578999999999999999998754 589999999999999999999999999999999999997533
Q ss_pred CHHHHHHHHHHHHHhhcC-hh-----------hH----------------------------------------------
Q 008560 373 AVKSLEVAVELLSQLASC-LP-----------IA---------------------------------------------- 394 (561)
Q Consensus 373 ~~~~~e~a~~aL~~L~~~-~~-----------~~---------------------------------------------- 394 (561)
....++.|+++|.|+|+. +. .+
T Consensus 296 ~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~ 375 (2102)
T PLN03200 296 AQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRD 375 (2102)
T ss_pred chHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCC
Confidence 234689999999998872 11 00
Q ss_pred ---------H-------------HHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhc
Q 008560 395 ---------E-------------VLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKML 451 (561)
Q Consensus 395 ---------~-------------~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll 451 (561)
+ .+.+.++++.||.+|...+.++++.++++|+++|. +++.++.+.+.|+++.|+++|
T Consensus 376 p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL 455 (2102)
T PLN03200 376 TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL 455 (2102)
T ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH
Confidence 0 01112344455566666667889999999999996 578999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccc-cchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcC-CchHHHHHHHcCchH
Q 008560 452 DGKAVEEKESAAKALSTLMLYA-GNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVH-CRKCRKQMVAAGACL 529 (561)
Q Consensus 452 ~~~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~-~~~~r~~i~~~g~i~ 529 (561)
.+++..+|+.|+.+|.+++... .++..+ .+.++|+.|+++|.++.. ..++.|+++|.|++. ++.++..+.++|+++
T Consensus 456 ~s~s~~iQ~~A~~~L~nLa~~ndenr~aI-ieaGaIP~LV~LL~s~~~-~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 456 GLSSEQQQEYAVALLAILTDEVDESKWAI-TAAGGIPPLVQLLETGSQ-KAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 9999999999999999999755 455555 567999999999986543 567889999999995 555666677899999
Q ss_pred HHHHhhccCccchH
Q 008560 530 HLRKLVEMDIEGAN 543 (561)
Q Consensus 530 ~L~~Ll~~~~~~ak 543 (561)
+|+++++++++..+
T Consensus 534 pLV~LL~sgd~~~q 547 (2102)
T PLN03200 534 ALLWLLKNGGPKGQ 547 (2102)
T ss_pred HHHHHHhCCCHHHH
Confidence 99999998877665
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-33 Score=265.79 Aligned_cols=386 Identities=20% Similarity=0.220 Sum_probs=339.8
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
.+...+.....+++.+...+..|..++.+++-.. +|+..|++-+++.+|+.-+-....++|..++.++.+|+..+++|.
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 3556677888899999999999999999888755 467778888999998887777778999999999999999999999
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
.+...| ++.+++++-++.+..+|.++..+|.+++...++++.++..|++|.||+++.++++..+..|..++.|++-..
T Consensus 162 kiA~sG--aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 162 KIARSG--ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhcc--chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 999999 999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhh--hHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 308 EIKENFIEEN--AVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 308 ~~r~~i~~~g--~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
.+|+.+++.+ .|+.|++++.++++.++-.|..+|.||++..+ ++..+++.|++|.++++++++.. ...-..+..++
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~-plilasVaCIr 317 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMG-PLILASVACIR 317 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcch-hHHHHHHHHHh
Confidence 9999999888 99999999999999999999999999998765 78999999999999999988776 45556677899
Q ss_pred HhhcChhhHHHHHhcchHHHHHHHhcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 008560 386 QLASCLPIAEVLVSDGFVVRLVNVLNCGV-LSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAA 463 (561)
Q Consensus 386 ~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~ 463 (561)
|++-+|-+...+.+.||+.+||.+|+.++ .++|-.|+.+||+|+. ++.+++.+.+.|++++|..++.+++..+|..-.
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 99999988888889999999999998775 5699999999999998 678899999999999999999999999999999
Q ss_pred HHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHH------cCchHHHHHhhcc
Q 008560 464 KALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVA------AGACLHLRKLVEM 537 (561)
Q Consensus 464 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~------~g~i~~L~~Ll~~ 537 (561)
.++..|+.+...+..| -+.+-++.|+.++.+.... .+..+..+|.|++.+.+.-.++.+ .|.-+.|.+++.+
T Consensus 398 ac~a~Lal~d~~k~~l-ld~gi~~iLIp~t~s~s~E-v~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 398 ACIAQLALNDNDKEAL-LDSGIIPILIPWTGSESEE-VRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHHhccccHHHH-hhcCCcceeecccCccchh-hcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 9999999988888888 5567788899999876543 356699999999977776655554 3445566676665
Q ss_pred Ccc
Q 008560 538 DIE 540 (561)
Q Consensus 538 ~~~ 540 (561)
+..
T Consensus 476 ~~~ 478 (550)
T KOG4224|consen 476 HEL 478 (550)
T ss_pred hHH
Confidence 543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=254.21 Aligned_cols=357 Identities=19% Similarity=0.238 Sum_probs=319.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHH
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIA 231 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~ 231 (561)
+..|+..+...+.+.|..++..+.+++.- +.|+..++..|++.+|.++-++.+..+|.++..+|.++....++|+.++.
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 44566666667778999999999999887 56888899999999999998999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcC--CHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh
Q 008560 232 EGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRG--GISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI 309 (561)
Q Consensus 232 ~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~ 309 (561)
.| +++.|+.++++++..+|++++.++.+++.+..++..+++.+ .++.|+.++++++++++..|.-+|+||+.+.+.
T Consensus 207 aG--~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 AG--GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred cC--CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 99 99999999999999999999999999999988999999877 899999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
...++++|.+|.++++++++..........|+.|++...- +-..+++.|.+.+|+++|+.++..+.+-+|...|++|+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 9999999999999999999888889999999999988642 456788999999999999998887899999999999997
Q ss_pred -ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 008560 390 -CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALST 468 (561)
Q Consensus 390 -~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~ 468 (561)
+..++..+.+.|.|+.+.+++.+++.++|.....++..|+.+++.+..+.+.|.++.|+.+..+.+.+++..|+.+|.|
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhHhhc----CCCHH-HHHHhccCCccchhhHHHHHHHHHhc
Q 008560 469 LMLYAGNRKILRKD----ERGIV-TVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 469 L~~~~~~~~~~~~~----~~~i~-~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
|+.+.++...++.. ..|+. .|+..+.++.. .....+.+.+..|.
T Consensus 444 lss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~-tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 444 LSSDVEHYARVIEAWDHPVQGIQGRLARFLASHEL-TFRHIARWTIQQLL 492 (550)
T ss_pred hhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHH-HHHHHHHHHHHHHH
Confidence 99887776666431 23443 47778877533 34455667776665
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.6e-28 Score=249.54 Aligned_cols=396 Identities=17% Similarity=0.172 Sum_probs=330.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-cchH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDD-KNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVD-SSKH 227 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~-~~~~ 227 (561)
.....+..+.+.+.+.+..+...++.+.+... .....++..|.||.+|.+|... ++.+|.+|+++|.|++... +.-+
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 37788899999999999999999988876422 2334455569999999999755 5999999999999999764 4556
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhhC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTP-GSQAFAAGVLRNLAG 305 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~A~~aL~nLs~ 305 (561)
.+++.| +++.+++++.+++..+++.|+|+|.|++.+. .+|..+..+|++++|+.++...++ .....+.|+|.|||.
T Consensus 147 ~vv~ag--avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VVVDAG--AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccCC--chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 788999 9999999999999999999999999999975 578888899999999999988776 678999999999998
Q ss_pred Cchhh-HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 306 FSEIK-ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 306 ~~~~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
+..-. ..-.-..++|.|..++.+.+.++...|+++|.+|+.+..+.-+.+++.|+++.|+.+|...+. .++.+|++++
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRai 303 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAI 303 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhc
Confidence 87322 223346799999999999999999999999999999888888999999999999999998775 7889999999
Q ss_pred HHhhc-ChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHH
Q 008560 385 SQLAS-CLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKES 461 (561)
Q Consensus 385 ~~L~~-~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 461 (561)
+|++. ++.-.+.++..|+++.|..++. +....++++|++++.|++. +.++.+++.++|.+|.|+.+++..+.++|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 99996 6666788888999999999998 4456689999999999997 7899999999999999999999999999999
Q ss_pred HHHHHHHhhcc-ccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-----CC----chHHHHHHHcCchHHH
Q 008560 462 AAKALSTLMLY-AGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-----HC----RKCRKQMVAAGACLHL 531 (561)
Q Consensus 462 A~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-----~~----~~~r~~i~~~g~i~~L 531 (561)
|++++.|++.. .+++-.+..+.+.|+++..+|.-.+... -..++-+|.++- .. ......|-++|++..+
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHH
Confidence 99999999943 3444455567789999999995433222 344666665552 11 5667889999999999
Q ss_pred HHhhccCccc-hHHHHHhhc
Q 008560 532 RKLVEMDIEG-ANKLLESLG 550 (561)
Q Consensus 532 ~~Ll~~~~~~-akk~~~~l~ 550 (561)
..|=.++..+ .+|+.+.+.
T Consensus 463 E~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 463 ENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 9999888755 455555543
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-29 Score=255.76 Aligned_cols=360 Identities=18% Similarity=0.225 Sum_probs=310.2
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchH
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~ 227 (561)
..|+.+|..|.. .++..+.+|+..|.+++.++.+..+.+++.|+||.++.++.+++.+++|.|+++|.|++.+ +.+|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 468899999974 4588999999999999999999999999999999999999999999999999999999988 46788
Q ss_pred HHHHhchhhHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCchHHHHHh-cCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSG-FAKERACVALQALSFSKENARAIGS-RGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
.+++.| ++++|+.++..... ....+++|+|.||+........+.. ..+++.|..++.+.++.+...|+++|.+|+.
T Consensus 189 ~vl~~g--~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 189 YVLSCG--ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHhhc--chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999999 99999999988765 6788999999999997543333332 4689999999999999999999999999997
Q ss_pred Cc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 306 FS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 306 ~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
++ +.-..+++.|+++.|+++|...+..++..|++++.|++.+++...+.++..|+++.|..++...+....+..|+++|
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 66 55666679999999999999999999999999999999999988899999999999999999766557899999999
Q ss_pred HHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHHH
Q 008560 385 SQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKES 461 (561)
Q Consensus 385 ~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 461 (561)
.|++. +.+..+.+++.|++|.|+.+|+.++..+|..|++++.|++. +++..+.+++.|++++|+.+|.-.+..+...
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 99996 88889999999999999999999999999999999999997 5788899999999999999998778888889
Q ss_pred HHHHHHHhhccccch--------hhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 462 AAKALSTLMLYAGNR--------KILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 462 A~~aL~~L~~~~~~~--------~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
+..+|.++....+.. ..++.+.+|+..+=.+=.++++... +.|..++-..
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy-~~A~~II~~y 484 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIY-KKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHH-HHHHHHHHHh
Confidence 999999998543332 2344666777766555455443333 3366666444
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.8e-26 Score=217.91 Aligned_cols=390 Identities=18% Similarity=0.163 Sum_probs=320.5
Q ss_pred HHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCC
Q 008560 146 EAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQE-DDKNVVIAVAQGVVPVLVKLMDSSS-LEMKEKTVASIARVSMVD 223 (561)
Q Consensus 146 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~~~ 223 (561)
+.....++.+.+.|.+.+.+.+.+|..+.+.+++. +..--..+++.|.||.++.++++.. ...+-+|+++|.|+++..
T Consensus 67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 34445789999999999999999999999998873 3334456789999999999996654 445678999999999875
Q ss_pred cch-HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhcCCh--HHHHHHHHH
Q 008560 224 SSK-HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQAGTP--GSQAFAAGV 299 (561)
Q Consensus 224 ~~~-~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~A~~a 299 (561)
... +.+++.| ++|.++++|.+++.++++.+.|+|.|++.+++ ++..+.+.|++++|+.++.+..+ ...+.+.|+
T Consensus 147 t~QTkvVvd~~--AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWt 224 (526)
T COG5064 147 TQQTKVVVDAG--AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWT 224 (526)
T ss_pred ccceEEEEeCC--chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHH
Confidence 544 4566899 99999999999999999999999999999865 77788889999999999987755 667999999
Q ss_pred HHHhhCCc---hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHH
Q 008560 300 LRNLAGFS---EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKS 376 (561)
Q Consensus 300 L~nLs~~~---~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~ 376 (561)
|.|||... ..-..+ ..++|.|.+++.+.++++...|++++..|+.+....-..+.+.|....|+++|..++. .+
T Consensus 225 LSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa-~i 301 (526)
T COG5064 225 LSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA-KI 301 (526)
T ss_pred HHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc-cc
Confidence 99999864 222233 4589999999999999999999999999999887788899999999999999998664 88
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCC
Q 008560 377 LEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGK 454 (561)
Q Consensus 377 ~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~ 454 (561)
+.++++.++|+.. ++...+.++..|+++.+-.+|.+....++..|++.+.|+.. +.+..+.+.++..+|+|+.+|..-
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 9999999999996 55566778888999999999999888999999999999987 789999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhccccchhhH---hhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-----------CCc-hHH
Q 008560 455 AVEEKESAAKALSTLMLYAGNRKIL---RKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-----------HCR-KCR 519 (561)
Q Consensus 455 ~~~v~~~A~~aL~~L~~~~~~~~~~---~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-----------~~~-~~r 519 (561)
+..++..|++++.|...+..++..+ .-+.+.|.+|..+|+-.++.. -+.++-++-++- .+. ...
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki-iev~LD~~eniLk~Ge~d~~~~~~nin~ya 460 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI-IEVALDAIENILKVGEQDRLRYGKNINIYA 460 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc-hhhhHHHHHHHHhhhhHHHHhccCCccHHH
Confidence 8899999999999999765554433 245688999999998765433 234566665543 111 123
Q ss_pred HHHHHcCchHHHHHhhccCccc
Q 008560 520 KQMVAAGACLHLRKLVEMDIEG 541 (561)
Q Consensus 520 ~~i~~~g~i~~L~~Ll~~~~~~ 541 (561)
..+-++|++..+..+-++....
T Consensus 461 ~~vE~Aggmd~I~~~Q~s~n~~ 482 (526)
T COG5064 461 VYVEKAGGMDAIHGLQDSVNRT 482 (526)
T ss_pred HHHHhcccHHHHHHhhhccccH
Confidence 3344499999888887766543
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=2.3e-25 Score=212.51 Aligned_cols=358 Identities=15% Similarity=0.184 Sum_probs=297.6
Q ss_pred HhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-cchH
Q 008560 150 AESRNLITRLQ-IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD-SSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~-~~~~ 227 (561)
.-|+.+++.+. +...-.+.+|+..|.+++++.....+.+++.|+||.++.+|.+++.+++|+++++|.|++.+. .+|.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 35788888884 445556889999999999998888888899999999999999999999999999999999885 5788
Q ss_pred HHHHhchhhHHHHHHHHhcCC--HHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh
Q 008560 228 VLIAEGLLLLNHLIRVLESGS--GFAKERACVALQALSFS--KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNL 303 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nL 303 (561)
.+...| ++.+++.+|.+.. .....++.|+|.||+.. +..-|.-.. .++|.|.+++.+.+++....|+|++..|
T Consensus 194 ~vL~~g--aleplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is-qalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 194 YVLQCG--ALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS-QALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHhcC--chHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 999999 9999999998874 47788999999999974 333343222 3699999999999999999999999999
Q ss_pred hCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHH
Q 008560 304 AGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVE 382 (561)
Q Consensus 304 s~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~ 382 (561)
+..+ +.-..+.+.|....|+++|.+++..++..++..+.|+..+++.-.+.+++.|+++.+..+|.+..+ .++..+++
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCW 349 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACW 349 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhhe
Confidence 9988 556667799999999999999999999999999999999988767788899999999999988775 89999999
Q ss_pred HHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC----CHHHHHHHHhCCChHHHHHhccCCCHH
Q 008560 383 LLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI----NSKARKEMGECGCIGPLIKMLDGKAVE 457 (561)
Q Consensus 383 aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 457 (561)
.|.|+.. +.+..+.+++.+.+|+|+++|..-+..++..|++++.|..+ -++..+.+++.|++.+|+.+|.-.+..
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 9999985 88889999999999999999999889999999999999986 278899999999999999999976777
Q ss_pred HHHHHHHHHHHhhcccc-----------chhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 458 EKESAAKALSTLMLYAG-----------NRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 458 v~~~A~~aL~~L~~~~~-----------~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
+-+.+..++.|...... ....++.+.+|+..+-.+-++.+.... ..|-+++-..
T Consensus 430 iiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy-~KAYsIIe~f 494 (526)
T COG5064 430 IIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIY-DKAYSIIEKF 494 (526)
T ss_pred chhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHH-HHHHHHHHHH
Confidence 77888888888874221 122334445666666555555433322 2255555443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=6.6e-22 Score=214.32 Aligned_cols=323 Identities=17% Similarity=0.129 Sum_probs=276.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCCh
Q 008560 211 KTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTP 290 (561)
Q Consensus 211 ~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 290 (561)
.+...|.||+.+......+.+.| .++.|+.+|++++.+....+..+|.+|+...+|+..+.+.|+++.|++++.+++.
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~--iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKG--IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 34457899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc
Q 008560 291 GSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS 370 (561)
Q Consensus 291 ~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~ 370 (561)
.....++++|+||+.++++|..|++.|++|.|+.++.++ ..+..++.+|.+++..++ .|..+...++++.+++++..
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~ 422 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999865 456779999999999765 78889999999999999887
Q ss_pred CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHhCCChHHHHH
Q 008560 371 VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINS-KARKEMGECGCIGPLIK 449 (561)
Q Consensus 371 ~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~~~~~i~~~g~i~~Lv~ 449 (561)
.+++++....+.++.||+.++.+.+.+++.++++.|++..-.... ....+++.|++.++ ..+..+. +.+..|+.
T Consensus 423 ~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~ 497 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAK 497 (708)
T ss_pred CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHH
Confidence 666677777899999999999999999998889999985543322 22457999999866 5555554 47888888
Q ss_pred hccC-CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccc-hhhHHHHHHHHHhcCCchHHHHHHHcCc
Q 008560 450 MLDG-KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQN-LDKKYPVAILAALVHCRKCRKQMVAAGA 527 (561)
Q Consensus 450 ll~~-~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~a~~~L~~La~~~~~r~~i~~~g~ 527 (561)
.+.. ++++..-.+.++|.||.....+...++++.+-++.|..+|.++... +....++..+.+++.++.|...+.+.|.
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl 577 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL 577 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence 8875 5677888899999999987778888888778899999999876332 2233477778888999999999999999
Q ss_pred hHHHHHhhccCccchH
Q 008560 528 CLHLRKLVEMDIEGAN 543 (561)
Q Consensus 528 i~~L~~Ll~~~~~~ak 543 (561)
++.|..|+.+...|=.
T Consensus 578 i~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDE 593 (708)
T ss_pred HHHHHHHHHhhCchHH
Confidence 9999999977655543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=7.1e-22 Score=214.09 Aligned_cols=348 Identities=20% Similarity=0.204 Sum_probs=284.6
Q ss_pred HHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCH
Q 008560 170 AMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSG 249 (561)
Q Consensus 170 Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~ 249 (561)
+..-|.+++ ++.++...+.+.|.|+.|+++|++++.++...++.+|.+|+...+++..+.+.| ++++|++++++++.
T Consensus 269 ~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g--iV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 269 AFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG--IVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC--CHHHHHHHhcCCCH
Confidence 444455554 667888889999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcC
Q 008560 250 FAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASG 329 (561)
Q Consensus 250 ~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~ 329 (561)
+.+..+.++|.||+.+++.+..++..|.+|.|+.++.++ ..+..+..+|+|||.+++.|..+...++++.+++++..+
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 999999999999999999999999999999999999864 455779999999999999999999999999999987654
Q ss_pred -CHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHh-------------------------------------hhcC
Q 008560 330 -TALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSY-------------------------------------WDSV 371 (561)
Q Consensus 330 -~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~l-------------------------------------L~~~ 371 (561)
+..+....+..+.|++.... +.+.+.+.|+++.|++. +..+
T Consensus 424 ~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~ 502 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG 502 (708)
T ss_pred CCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC
Confidence 44567777888888887664 34556665666555433 2233
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHh-cchHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Q 008560 372 SAVKSLEVAVELLSQLASCLPIAEVLVS-DGFVVRLVNVLNCG--VLSVRIAAARAVSMLGINSKARKEMGECGCIGPLI 448 (561)
Q Consensus 372 ~~~~~~e~a~~aL~~L~~~~~~~~~l~~-~~~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv 448 (561)
++.+..-.++++|.||.........+++ .+++|.+...|..+ .+++...++..+..+|.++++...+.+.|.++.|+
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li 582 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLI 582 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHH
Confidence 3445666788888888864445555554 69999999999765 35788889999999999999999999999999999
Q ss_pred HhccC--CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHH
Q 008560 449 KMLDG--KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVA 524 (561)
Q Consensus 449 ~ll~~--~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~ 524 (561)
.++.+ .+++..-....++..|..|.+.|+.++++...+..|+.+++..+.. .++.+=.+|--++ .+++-.++|-.
T Consensus 583 ~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~-ir~~~d~~Ldii~e~d~~w~~ri~~ 660 (708)
T PF05804_consen 583 ELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAE-IRKVCDNALDIIAEYDEEWAERIRR 660 (708)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhCHHHHHHhhH
Confidence 99985 4677777788899999999999999998888888899999876543 4555666665555 45554444433
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=2.1e-19 Score=190.44 Aligned_cols=341 Identities=21% Similarity=0.214 Sum_probs=272.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---Cch
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS---KEN 268 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~~~ 268 (561)
-+|-.+.+|.+.++.+|-+|+..+..++.. ++.+..+.+-| +|+.||.+|++.+.+++.+||++|.||... ++|
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlg--gI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLG--GIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhc--cHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 367788899999999999999999999975 45677888899 999999999999999999999999999884 358
Q ss_pred HHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc----------C----CHHH
Q 008560 269 ARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVAS----------G----TALA 333 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~----------~----~~~~ 333 (561)
+..|.+.++|+.|+++++. .+.++++...++||||++.+..+..++.. ++..|.+.+-. . +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999996 78899999999999999998888887765 55555554421 1 1356
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHh-CcHHHHHHhhhc-----CCCHHHHHHHHHHHHHhhc--Chhh------------
Q 008560 334 QENVFGCLCNLVSDDESLKLLIVRE-GGIGSLKSYWDS-----VSAVKSLEVAVELLSQLAS--CLPI------------ 393 (561)
Q Consensus 334 ~~~a~~~L~~L~~~~~~~r~~~~~~-g~i~~Lv~lL~~-----~~~~~~~e~a~~aL~~L~~--~~~~------------ 393 (561)
-.++..||.|+++.....|+.+.+. |.|+.|+.+++. ..+.+..|.|+.+|+||+. ..+.
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7899999999999877788888764 779999999974 3445889999999999984 2110
Q ss_pred ------------------HHH----------------------HHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC-
Q 008560 394 ------------------AEV----------------------LVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGIN- 431 (561)
Q Consensus 394 ------------------~~~----------------------l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~- 431 (561)
... ++...+|..-..+|. +.+..+.|+++.+|.||+..
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 000 111123344344443 45678999999999999862
Q ss_pred ----HHHHHHH-HhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCcc---c--hh
Q 008560 432 ----SKARKEM-GECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQ---N--LD 501 (561)
Q Consensus 432 ----~~~~~~i-~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~---~--~~ 501 (561)
...+..+ .++.+.+.|+.|++.+++.+.+.++.+|.||+.+..|++.+. ..+++.|+..|....+ . +.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHHhCcCCCCCcCchHHH
Confidence 4566666 788999999999999999999999999999999999999985 4689999999955433 1 11
Q ss_pred hHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccC
Q 008560 502 KKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMD 538 (561)
Q Consensus 502 k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~ 538 (561)
-..++..|.++. .+..+.+.+.+.++++.|+-+..+.
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 122455578886 8999999999999999999988763
No 12
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=6.6e-18 Score=185.36 Aligned_cols=349 Identities=19% Similarity=0.164 Sum_probs=269.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCC-ch---
Q 008560 196 VLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG---SGFAKERACVALQALSFSK-EN--- 268 (561)
Q Consensus 196 ~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~-~~--- 268 (561)
.|..++...+ ++.-.+.+..++.+++.+..+...| .++.|+++|.-. +.+.+..|-.+|+||..+. +.
T Consensus 201 sllsml~t~D---~ee~ar~fLemSss~esCaamR~Sg--CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSG--CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcccCC---HHHHHHHHHHhccCchhhHHHHhcc--chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 3444444443 5666777888899999999999999 999999999654 5678999999999998763 32
Q ss_pred HHHHHhcCCHHHHHHHHhc-------CC--------hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcC----
Q 008560 269 ARAIGSRGGISSLLEICQA-------GT--------PGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASG---- 329 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~-------~~--------~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~---- 329 (561)
++.+.--..++.+...|.. +. ......|..+|..++++++.|..|.+.|++..+.+|+.-+
T Consensus 276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 2222222233434444432 11 1223589999999999999999999999999999987521
Q ss_pred --------CHHHHHHHHHHHHHhcCCChHHHHHHH-HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh-cChhhHH-HHH
Q 008560 330 --------TALAQENVFGCLCNLVSDDESLKLLIV-REGGIGSLKSYWDSVSAVKSLEVAVELLSQLA-SCLPIAE-VLV 398 (561)
Q Consensus 330 --------~~~~~~~a~~~L~~L~~~~~~~r~~~~-~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~-~~~~~~~-~l~ 398 (561)
...++.+++++|.||++++..+|..++ ..|.|+.+|..|.+.++ ++......+|+||+ +.+.+.. .+-
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHH
Confidence 125899999999999999999998887 56889999999998775 89999999999999 4444544 444
Q ss_pred hcchHHHHHH-HhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhC-CChHHHHHhccC----CCHHHHHHHHHHHHHhhc
Q 008560 399 SDGFVVRLVN-VLNCGVLSVRIAAARAVSMLGI-NSKARKEMGEC-GCIGPLIKMLDG----KAVEEKESAAKALSTLML 471 (561)
Q Consensus 399 ~~~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~-g~i~~Lv~ll~~----~~~~v~~~A~~aL~~L~~ 471 (561)
+.|-+..|+. .|+............+||||+. +.+++..|... |++..|+.+|.- +.-.+.+.|.++|+|.+.
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 5688888888 6777777778889999999997 57888888776 889999999973 456678999999999874
Q ss_pred ----cccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccCc----cch
Q 008560 472 ----YAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMDI----EGA 542 (561)
Q Consensus 472 ----~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~~----~~a 542 (561)
..+.|+ +..+.+.+..|+|.|.++.-. .--++++.|+||+ .+++-++.+++.|+++.|..|+.+.. .|+
T Consensus 515 ~IAt~E~yRQ-ILR~~NCLq~LLQ~LKS~SLT-iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS 592 (2195)
T KOG2122|consen 515 LIATCEDYRQ-ILRRHNCLQTLLQHLKSHSLT-IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS 592 (2195)
T ss_pred HhhccchHHH-HHHHhhHHHHHHHHhhhcceE-EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence 334444 446679999999999887543 3456999999997 99999999999999999999997643 345
Q ss_pred HHHHHhhccC
Q 008560 543 NKLLESLGRG 552 (561)
Q Consensus 543 kk~~~~l~~~ 552 (561)
-++|+-|-.+
T Consensus 593 aaALrNLln~ 602 (2195)
T KOG2122|consen 593 AAALRNLLNF 602 (2195)
T ss_pred HHHHHHHhcC
Confidence 5666555443
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=3.6e-17 Score=173.64 Aligned_cols=377 Identities=19% Similarity=0.154 Sum_probs=290.6
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---Cc
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV---DS 224 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~---~~ 224 (561)
....+++.+.+|.+.++..+..|...+..++..+.+.+..+.+-|+|+.|+.+|++.+.+++.+|+.+|.||... ++
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 445688899999999999999999999999999999999999999999999999999999999999999999864 35
Q ss_pred chHHHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc-------C-------C
Q 008560 225 SKHVLIAEGLLLLNHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQA-------G-------T 289 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-------~-------~ 289 (561)
++-.|.+.+ +++.++++|++ ++.++++..+.+|+||++++..+..|+.. ++..|..-+-. + +
T Consensus 311 NKlai~~~~--Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 311 NKLAIKELN--GVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred cchhhhhcC--ChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccc
Confidence 788899999 99999999997 79999999999999999997777766654 56666553321 1 1
Q ss_pred hHHHHHHHHHHHHhhC-CchhhHHHHh-hhhHHHHHHHhh------cCCHHHHHHHHHHHHHhcCCCh-----HHHHHHH
Q 008560 290 PGSQAFAAGVLRNLAG-FSEIKENFIE-ENAVMVLLGLVA------SGTALAQENVFGCLCNLVSDDE-----SLKLLIV 356 (561)
Q Consensus 290 ~~~~~~A~~aL~nLs~-~~~~r~~i~~-~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~L~~~~~-----~~r~~~~ 356 (561)
...-..+.++|+|++. ..+.|++|.+ .|.|..|+..++ .-+....++++..|.|++..-+ ..+....
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 2344789999999998 4589999985 589999999886 2334678999999999975321 1111111
Q ss_pred H------------------------------------------------hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 357 R------------------------------------------------EGGIGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 357 ~------------------------------------------------~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
. .-+|..-+.++.......+.|.+.++|-||+
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 0 0123443455554444589999999999999
Q ss_pred cC-----hhhHHHH-HhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCC------CH
Q 008560 389 SC-----LPIAEVL-VSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGK------AV 456 (561)
Q Consensus 389 ~~-----~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~------~~ 456 (561)
.+ ...+..+ ....++++++++|+.++..+...++.+|.||+.+..+++.|. .++++.|+..|... +.
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchH
Confidence 41 2234444 456899999999999999999999999999999999999998 68899999999842 36
Q ss_pred HHHHHHHHHHHHhh-ccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchH
Q 008560 457 EEKESAAKALSTLM-LYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACL 529 (561)
Q Consensus 457 ~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~ 529 (561)
++-..++..|.++. .+..|-+.+ -+.+|++.|+-+..+....-.-++|...|..|=...+.+...-..|.-.
T Consensus 627 dtv~~vc~tl~niv~~~~~nAkdl-~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q 699 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRKNVLNAKDL-LEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQ 699 (717)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHH-HhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHH
Confidence 77788889999998 566666666 4569999999888763221122345566666656666665555555443
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.8e-15 Score=142.93 Aligned_cols=313 Identities=18% Similarity=0.203 Sum_probs=257.0
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHh-cCCcchHHHHHhchhhH
Q 008560 161 IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVS-MVDSSKHVLIAEGLLLL 237 (561)
Q Consensus 161 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La-~~~~~~~~i~~~g~~~i 237 (561)
+++.....+++..|..+....|+ +.+..+...++.+|..+ +.++.......+..-+ .++-+|..+++.+ +.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~--il 191 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK--IL 191 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh--HH
Confidence 45555667888888888776664 34678889999988543 4666666677776655 4567899999999 99
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCch----------HHHHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhhC
Q 008560 238 NHLIRVLES-GSGFAKERACVALQALSFSKEN----------ARAIGSRGGISSLLEICQAG-TPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 238 ~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~ll~~~-~~~~~~~A~~aL~nLs~ 305 (561)
+.+.+.|.. |...+....++++..|..+++. .+.|+..|++..|++.+..+ +|......+.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999877754 5556777899999999887654 46788888999999999876 78888999999999999
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCCH-H---HHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGTA-L---AQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLEVA 380 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~~-~---~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~a 380 (561)
.++.+..+++.|++..|+.++.+.++ . ....++..|..|+..|. ++..+++.||.+.++.++.. .++|.+.+.+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999987333 3 44567888888887664 89999999999999988754 6678999999
Q ss_pred HHHHHHhh-cChhhHHHHHhcchHHHHHHHhcCCC--HHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCH
Q 008560 381 VELLSQLA-SCLPIAEVLVSDGFVVRLVNVLNCGV--LSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAV 456 (561)
Q Consensus 381 ~~aL~~L~-~~~~~~~~l~~~~~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~ 456 (561)
+.++..|| +.|++...+++.|+-...++.|+... ..+|.+|++++.|+.. +.++++.+... ++..|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999 59999999999999999999997654 4789999999999987 66777777765 47888888888889
Q ss_pred HHHHHHHHHHHHhhccccchhhHhh
Q 008560 457 EEKESAAKALSTLMLYAGNRKILRK 481 (561)
Q Consensus 457 ~v~~~A~~aL~~L~~~~~~~~~~~~ 481 (561)
.+...|..+|+-|-.+..+|++.-.
T Consensus 430 tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred cHHHHHHHHHHhcCcchhhHHHhcc
Confidence 9999999999999999998887743
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=8.4e-16 Score=169.16 Aligned_cols=356 Identities=17% Similarity=0.226 Sum_probs=271.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC---HHHHHHHHHHHHHHhcCC-c-c--h
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS---LEMKEKTVASIARVSMVD-S-S--K 226 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~---~~~~e~a~~~L~~La~~~-~-~--~ 226 (561)
.++.++...+. .+-.+.++.+. .+++....+...|.++.|+.+|..++ .+.+..|-.+|.||..+. + . |
T Consensus 201 sllsml~t~D~---ee~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE---EEMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH---HHHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 55666655544 34445555544 45566677788999999999997654 578888999999998653 2 2 1
Q ss_pred HHHHHhchhhHHHHH-------HHHhcC-------CHHHHH-HHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc----
Q 008560 227 HVLIAEGLLLLNHLI-------RVLESG-------SGFAKE-RACVALQALSFSKENARAIGSRGGISSLLEICQA---- 287 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv-------~lL~~~-------~~~~~~-~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~---- 287 (561)
+.+.--. +++.+. .+++.+ +.+-+. .|..+|..+++++|.+..+.+-|++.++.+++.-
T Consensus 277 RE~kvL~--lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~m 354 (2195)
T KOG2122|consen 277 REKKVLH--LLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEM 354 (2195)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 1111122 223222 223322 233444 6677788999999999999999999999887752
Q ss_pred -C-------ChHHHHHHHHHHHHhhCCc-hhhHHHH-hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChH-HHHHHH
Q 008560 288 -G-------TPGSQAFAAGVLRNLAGFS-EIKENFI-EENAVMVLLGLVASGTALAQENVFGCLCNLVSDDES-LKLLIV 356 (561)
Q Consensus 288 -~-------~~~~~~~A~~aL~nLs~~~-~~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~r~~~~ 356 (561)
+ ....++.|.-+|.||.+++ .|+..+. ..|.+.++|..|.+..+++...-+.+|.||+...+. .+..+-
T Consensus 355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence 1 1246799999999999988 6777776 669999999999999999999999999999986554 456666
Q ss_pred HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhc-chHHHHHHHhcCC----CHHHHHHHHHHHHHHcC
Q 008560 357 REGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSD-GFVVRLVNVLNCG----VLSVRIAAARAVSMLGI 430 (561)
Q Consensus 357 ~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~-~~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~~ 430 (561)
+.|-+..|...--...........+.+||||+. |.+++..|+.. |++..||.+|... ...+.+.|-++|.|++.
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 778888888776554444678899999999997 89999999996 9999999999654 34788999999999986
Q ss_pred ----CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHH
Q 008560 431 ----NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPV 506 (561)
Q Consensus 431 ----~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~ 506 (561)
.+.+++.+.+..++..|++.|++.+-.+.-++++.|+||....+.-++++.|.+.|+.|..++.+....+ .+.++
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMI-a~GSa 593 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMI-AMGSA 593 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhh-hhhHH
Confidence 5789999999999999999999999889999999999999655555555577799999999998876544 46688
Q ss_pred HHHHHhcCCc
Q 008560 507 AILAALVHCR 516 (561)
Q Consensus 507 ~~L~~La~~~ 516 (561)
++|.||....
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 8888886433
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.2e-14 Score=135.90 Aligned_cols=322 Identities=16% Similarity=0.177 Sum_probs=246.7
Q ss_pred hcCChHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcC
Q 008560 190 AQGVVPVLVKLMD---SSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG--SGFAKERACVALQALSF 264 (561)
Q Consensus 190 ~~g~v~~Lv~lL~---~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~ 264 (561)
+.|..+.++.++. +++..+.-+++.+|..+... ...+.+.. +...++.+|... +.++-....+.+..-+.
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~---qpdl~da~--g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK---QPDLFDAE--AMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC---Ccchhccc--cHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 4677777776553 44567777888888777643 34566767 888889988654 55555555556665555
Q ss_pred -CCchHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchh----------hHHHHhhhhHHHHHHHhhcCC-H
Q 008560 265 -SKENARAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEI----------KENFIEENAVMVLLGLVASGT-A 331 (561)
Q Consensus 265 -~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~----------r~~i~~~g~v~~Lv~lL~~~~-~ 331 (561)
++.|+..+.+.++.+.+...+. .+..+..+...++++-|..++++ -+.|+.+|+...|++.++.+- +
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 4459999999999998886665 44556888999999999877664 356778899999999998543 4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHH---HHHHHHHHHhhcChhhHHHHHhcchHHHHHH
Q 008560 332 LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSL---EVAVELLSQLASCLPIAEVLVSDGFVVRLVN 408 (561)
Q Consensus 332 ~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~---e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~ 408 (561)
++......+|..|+..++ +++.+.+.||+..|++++.++++...+ ..++..|+.|+.++..+..+++.|+.+.++.
T Consensus 257 ~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 677888889999988776 899999999999999999986655544 5788999999999999999999999999999
Q ss_pred Hhc--CCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccC--CCHHHHHHHHHHHHHhhcccc-chhhHhhc
Q 008560 409 VLN--CGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDG--KAVEEKESAAKALSTLMLYAG-NRKILRKD 482 (561)
Q Consensus 409 lL~--~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~--~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~ 482 (561)
++. ..++.+-+.+..++.-||- ++++...+++.|+-..-++.++. ....+|+.|+.+++|+..++. +++.+.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-- 413 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-- 413 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH--
Confidence 773 4578888888889999986 79999999999999999999984 457789999999999997654 455554
Q ss_pred CCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHH
Q 008560 483 ERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRK 520 (561)
Q Consensus 483 ~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~ 520 (561)
..|++.|+..-....+ .....+-.+|..|.-+...|+
T Consensus 414 ~~GiE~Li~~A~~~h~-tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 414 ANGIEKLIRTAKANHE-TCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred hccHHHHHHHHHhcCc-cHHHHHHHHHHhcCcchhhHH
Confidence 3799998877654333 234446666777754444443
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.65 E-value=1.6e-12 Score=139.90 Aligned_cols=366 Identities=17% Similarity=0.175 Sum_probs=277.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHhc
Q 008560 155 LITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS-KHVLIAEG 233 (561)
Q Consensus 155 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~-~~~i~~~g 233 (561)
++..|+..+.+.-..++..|..+....+ -.. ...+..+.|...|.++++.++..++..|.++..+.+. ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~~~-l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS--PDS-LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC--HHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 7777877766666666666666655332 111 1567789999999999999999999999999877654 45566788
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHH
Q 008560 234 LLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKEN 312 (561)
Q Consensus 234 ~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~ 312 (561)
.++.++..|.+++..+...|+.+|.+++..+.....+...+.+..|..++...++..+..+..++.+++... +....
T Consensus 120 --l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 120 --LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred --HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999998877777888888999999999888888999999999998766 67777
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC-CH---H-HHHHHHHHHHHh
Q 008560 313 FIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS-AV---K-SLEVAVELLSQL 387 (561)
Q Consensus 313 i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~-~~---~-~~e~a~~aL~~L 387 (561)
..+.|.++.++..+.+++.-++.+++.+|..|+.. +.....+.+.|+++.|..++.... ++ . ..-..+...+++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 77899999999999998888999999999999994 456888899999999999997632 22 1 112233666667
Q ss_pred hc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHH-HhCC-ChHHHHHhc----cCCCHHHHH
Q 008560 388 AS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEM-GECG-CIGPLIKML----DGKAVEEKE 460 (561)
Q Consensus 388 ~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i-~~~g-~i~~Lv~ll----~~~~~~v~~ 460 (561)
+. ++...-... ..++..+.+++.+.+...+..|..++..++.+.+.+..+ ...| .++..++.. .++..++|.
T Consensus 277 a~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~ 355 (503)
T PF10508_consen 277 ARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKL 355 (503)
T ss_pred HhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHH
Confidence 76 332211110 256777788888899999999999999999998888888 4443 445544444 456778999
Q ss_pred HHHHHHHHhhccccc--hhhH-------hh--cCCCHH-HHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCch
Q 008560 461 SAAKALSTLMLYAGN--RKIL-------RK--DERGIV-TVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGAC 528 (561)
Q Consensus 461 ~A~~aL~~L~~~~~~--~~~~-------~~--~~~~i~-~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i 528 (561)
.+..+|.++...... -..+ -. ..+... .++.++..+-+ ..+..+...|..++..+-+.+.|.+.+++
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~-elr~a~~~~l~~l~~~~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFP-ELRCAAYRLLQALAAQPWGQREICSSPGF 434 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-HHHHHHHHHHHHHhcCHHHHHHHHhCccH
Confidence 999999999633222 1111 01 112233 56667765423 44667899999999999998888887775
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.64 E-value=7.2e-13 Score=142.47 Aligned_cols=335 Identities=15% Similarity=0.136 Sum_probs=262.1
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
.......+...|+++++..|.-++..|.+++.+++.....+.+.+.++.++.++.+++..+.+.|+.+|..++.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45566778888999999999999999999998887777778889999999999999999999999999999999888878
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
.++..+ .+..|..++.+.+..+|.++..++.+++..+ +....+...|.++.++.-+.+.|.-.+..++..|..|+..
T Consensus 155 ~l~~~~--~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSN--LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcc--hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 888989 8999999999988889999999999998764 5666777789999999999998888999999999999998
Q ss_pred chhhHHHHhhhhHHHHHHHhhcCCHH------HHHHHHHHHHHhcCCChH-HHHHHHHhCcHHHHHHhhhcCCCHHHHHH
Q 008560 307 SEIKENFIEENAVMVLLGLVASGTAL------AQENVFGCLCNLVSDDES-LKLLIVREGGIGSLKSYWDSVSAVKSLEV 379 (561)
Q Consensus 307 ~~~r~~i~~~g~v~~Lv~lL~~~~~~------~~~~a~~~L~~L~~~~~~-~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~ 379 (561)
+.+...+.+.|+++.|.+++.....+ .....+....+++..++. ... .-...+..|..++++ .++..+..
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~--~~p~~~~~l~~~~~s-~d~~~~~~ 309 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE--LYPAFLERLFSMLES-QDPTIREV 309 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH--HHHHHHHHHHHHhCC-CChhHHHH
Confidence 89999999999999999999754332 223344666777764331 111 001233344444444 44588999
Q ss_pred HHHHHHHhhcChhhHHHH-Hhc-ch----HHHHHHHhcCCCHHHHHHHHHHHHHHcC--CH-------HHHHHHH---hC
Q 008560 380 AVELLSQLASCLPIAEVL-VSD-GF----VVRLVNVLNCGVLSVRIAAARAVSMLGI--NS-------KARKEMG---EC 441 (561)
Q Consensus 380 a~~aL~~L~~~~~~~~~l-~~~-~~----i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~-------~~~~~i~---~~ 441 (561)
|+.+++.++++.+++..+ ... +. +..+-....++..+++..+..+|.++-. .+ ...+... ..
T Consensus 310 A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~ 389 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSG 389 (503)
T ss_pred HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcC
Confidence 999999999999999988 443 33 4444445567778999999999999943 21 1122221 22
Q ss_pred CChH-HHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHH
Q 008560 442 GCIG-PLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIV 487 (561)
Q Consensus 442 g~i~-~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~ 487 (561)
+... .++.+++.+-+++|..+...|..|+.+++..+.+....+-++
T Consensus 390 ~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie 436 (503)
T PF10508_consen 390 SPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIE 436 (503)
T ss_pred CchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHh
Confidence 3344 677788777799999999999999999999888865433334
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.5e-12 Score=128.82 Aligned_cols=375 Identities=18% Similarity=0.179 Sum_probs=275.1
Q ss_pred hHHHHHhHHHHHHHhcCC--CHHHH-HHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008560 145 REAVRAESRNLITRLQIG--SAESK-NSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM 221 (561)
Q Consensus 145 ~~~~~~~v~~Lv~~L~~~--~~~~~-~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~ 221 (561)
++..+..+..+...++.- ..+.- +.|+.-|.+++ ++-+.-..+.....|..||+.|+..+.+........|..|+.
T Consensus 255 netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 344455666666666531 11222 33444455554 455555667788999999999999999999999999999999
Q ss_pred CCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHH
Q 008560 222 VDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLR 301 (561)
Q Consensus 222 ~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~ 301 (561)
.++++..+.+.| .+..|++++....++.+......|.|++.+...+..+++.|.+|.|+.++.+.+. ...|...|+
T Consensus 334 f~eNK~~M~~~~--iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lY 409 (791)
T KOG1222|consen 334 FDENKIVMEQNG--IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLY 409 (791)
T ss_pred hccchHHHHhcc--HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhh
Confidence 999999999999 9999999999999999999999999999999999999999999999999977543 346888999
Q ss_pred HhhCCchhhHHHHhhhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHH---------------------------HH
Q 008560 302 NLAGFSEIKENFIEENAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESL---------------------------KL 353 (561)
Q Consensus 302 nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~---------------------------r~ 353 (561)
+++.+++.+..+.....++.+.+.+-++.. ++-..-+..-.|+|....+. -+
T Consensus 410 h~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vR 489 (791)
T KOG1222|consen 410 HLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVR 489 (791)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHH
Confidence 999999999999999999999887655443 33333333344555422100 01
Q ss_pred HHHH-hC--------cHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHH-hcchHHHHHHHhcCC--CHHHHHHH
Q 008560 354 LIVR-EG--------GIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLV-SDGFVVRLVNVLNCG--VLSVRIAA 421 (561)
Q Consensus 354 ~~~~-~g--------~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~-~~~~i~~Lv~lL~~~--~~~~~~~A 421 (561)
.+.+ +| -+.-|...+..+++..-.-.|+++|+||...+-.-..+. +...+|.+-..|..+ ..+++-..
T Consensus 490 niSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~ 569 (791)
T KOG1222|consen 490 NISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQI 569 (791)
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHH
Confidence 1111 12 134444555555555666778899999987444444444 458999999988765 34667777
Q ss_pred HHHHHHHcCCHHHHHHHHhCCChHHHHHhccCC--CHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccc
Q 008560 422 ARAVSMLGINSKARKEMGECGCIGPLIKMLDGK--AVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQN 499 (561)
Q Consensus 422 ~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 499 (561)
+.++..++++..+...+..+|.++.|+++|+++ +++....-.-....+..|...|+.++++...-..++.+++..+..
T Consensus 570 vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~e 649 (791)
T KOG1222|consen 570 VIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAE 649 (791)
T ss_pred HHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHH
Confidence 888888888899999999999999999999854 444444445556666788888999989888888899999876543
Q ss_pred hhhHHHHHHHHHhc-CCchHHHHHHHc
Q 008560 500 LDKKYPVAILAALV-HCRKCRKQMVAA 525 (561)
Q Consensus 500 ~~k~~a~~~L~~La-~~~~~r~~i~~~ 525 (561)
.++.+=-+|--++ .+++-.++|...
T Consensus 650 -iRkVCDn~LdIiae~d~EWAKrI~~E 675 (791)
T KOG1222|consen 650 -IRKVCDNALDIIAEHDKEWAKRIAGE 675 (791)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4555556666666 566666666543
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.3e-13 Score=133.03 Aligned_cols=325 Identities=15% Similarity=0.095 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc
Q 008560 208 MKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQA 287 (561)
Q Consensus 208 ~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~ 287 (561)
....|+..|.|++.+-.....+...+ .+.-|++.|+..+.+.-......|..|+...+|+..+.+.|.++.|+++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkn--iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKN--IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHh--HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 44566778889998877778888889 9999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHh
Q 008560 288 GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSY 367 (561)
Q Consensus 288 ~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~l 367 (561)
..++.+...+..|.||+.+..+|.+|+..|.+|.|..++.+++. ..-|+..|..++.++. .+..+....+|+.+.+.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654 3446677778877664 78999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHhCCChH
Q 008560 368 WDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVN-VLNCGVLSVRIAAARAVSMLGINSK-ARKEMGECGCIG 445 (561)
Q Consensus 368 L~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~~-~~~~i~~~g~i~ 445 (561)
+-.+.+.++--..+..--|||-+..+.+.+++-.++..|.+ .+...+.- -.+.+.+++.++. .+..+++ .+.
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvg 507 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVG 507 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHH
Confidence 88776656665555566789988888888887667777776 44555443 3467888888654 5556655 377
Q ss_pred HHHHhccCC-CHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccch-hhHHHHHHHHHhcCCchHHHHHH
Q 008560 446 PLIKMLDGK-AVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNL-DKKYPVAILAALVHCRKCRKQMV 523 (561)
Q Consensus 446 ~Lv~ll~~~-~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~a~~~L~~La~~~~~r~~i~ 523 (561)
.|...+..+ ++..-..+.+.|.+|....-....+.+.++-||++-+.|.|.-... -....+-++..++.+..|...+.
T Consensus 508 dLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla 587 (791)
T KOG1222|consen 508 DLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLA 587 (791)
T ss_pred HHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhC
Confidence 777777754 4445666788888998877778888899999999999998863322 22235666777789999999999
Q ss_pred HcCchHHHHHhhccCccchH
Q 008560 524 AAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 524 ~~g~i~~L~~Ll~~~~~~ak 543 (561)
.+|.++.|+.|+++-..+-.
T Consensus 588 ~a~~i~tlieLL~a~QeDDE 607 (791)
T KOG1222|consen 588 PAKLIDTLIELLQACQEDDE 607 (791)
T ss_pred ccccHHHHHHHHHhhcccch
Confidence 99999999999987655433
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-12 Score=129.44 Aligned_cols=381 Identities=13% Similarity=0.048 Sum_probs=268.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC----C---HHHHHHHHHHHHHHhcC-C
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS----S---LEMKEKTVASIARVSMV-D 223 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~----~---~~~~e~a~~~L~~La~~-~ 223 (561)
+..|.+...+.+.+.-.+..+.|.+.+.++.++|..+.+.||-..++++|+.. + .+.-.-+...|.|-..+ +
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 34444445567778888999999999999999999999999988888887642 2 24445556677776544 6
Q ss_pred cchHHHHHhchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCC-Cch-HHHHHhcCCHHHHHHHHhcC-ChHHHHHHHH
Q 008560 224 SSKHVLIAEGLLLLNHLIRVLESG--SGFAKERACVALQALSFS-KEN-ARAIGSRGGISSLLEICQAG-TPGSQAFAAG 298 (561)
Q Consensus 224 ~~~~~i~~~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~ll~~~-~~~~~~~A~~ 298 (561)
+.+.++++.| +++.|...+.-+ +....+.......+|.+- .++ .....+......|+.++... .++..+.+..
T Consensus 169 ~l~aq~~~~g--Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 169 ELRAQVADAG--VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred HHHHHHHhcc--cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 6789999999 999998888655 444444444444444321 222 22223355666777777654 5667789999
Q ss_pred HHHHhhCCchhhHHHHhhhhHHHHHHHhhc-CCH-------HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc
Q 008560 299 VLRNLAGFSEIKENFIEENAVMVLLGLVAS-GTA-------LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS 370 (561)
Q Consensus 299 aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~-~~~-------~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~ 370 (561)
.|...+.++.++-.+++.|.+..++++++. .+. ..-..++....-|..+|++.+.....-..++.++..+++
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S 326 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS 326 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence 999999999999999999999999999975 211 123344555555666776544433332367777777776
Q ss_pred CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChH
Q 008560 371 VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNC-----GVLSVRIAAARAVSMLGINSKARKEMGECGCIG 445 (561)
Q Consensus 371 ~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~-----~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~ 445 (561)
.+. ..+..+.-+|+|+++.+.+.-.+++.+++..|++.|.. ++.+.|.++..+|.||.-...++..+..+|.++
T Consensus 327 ~d~-~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvte 405 (604)
T KOG4500|consen 327 DDS-NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTE 405 (604)
T ss_pred Cch-hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHH
Confidence 554 88999999999999999999999999999999998743 466889999999999999888999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcccc-chhhHhhcCCCHHHHHHhccCCccchhhHH---HHHHHHHhcCCchHHHH
Q 008560 446 PLIKMLDGKAVEEKESAAKALSTLMLYAG-NRKILRKDERGIVTVVQLLDPLIQNLDKKY---PVAILAALVHCRKCRKQ 521 (561)
Q Consensus 446 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~---a~~~L~~La~~~~~r~~ 521 (561)
..+.+++...|.++.+-...|+.+....+ --.++.+...-+..|++.-.+++-....-. .+..|..-+..++.-..
T Consensus 406 aIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~t 485 (604)
T KOG4500|consen 406 AILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILT 485 (604)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhh
Confidence 99999998888888877777766653322 223333332345566666655422211111 23333333455666677
Q ss_pred HHHcCchHHHHHhh
Q 008560 522 MVAAGACLHLRKLV 535 (561)
Q Consensus 522 i~~~g~i~~L~~Ll 535 (561)
+..+|+++.++..+
T Consensus 486 vpksg~ik~~Vsm~ 499 (604)
T KOG4500|consen 486 VPKSGGIKEKVSMF 499 (604)
T ss_pred ccccccHHHHHHHH
Confidence 78888877776654
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-12 Score=127.82 Aligned_cols=347 Identities=15% Similarity=0.108 Sum_probs=258.9
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchhhHHHHHHHHhcC-------CHHHHHHHHHHH
Q 008560 188 AVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLLLLNHLIRVLESG-------SGFAKERACVAL 259 (561)
Q Consensus 188 i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~~i~~Lv~lL~~~-------~~~~~~~aa~~L 259 (561)
-+++|+++.|.....+++.++.++..++|+|++.+ +++|..+.+.| +-..++++|+.- +.+.-..+...|
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg--Gaqivid~L~~~cs~d~~ane~~~~v~~g~l 160 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLG--GAQIVIDVLKPYCSKDNPANEEYSAVAFGVL 160 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcC--CceehHhhhccccccCCccHHHHHHHHHHHH
Confidence 35688999999999999999999999999999976 68999999999 877888888652 234555677778
Q ss_pred HHhcCC-CchHHHHHhcCCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCCc-h-hhHHHHhhhhHHHHHHHhhcC-CHHH
Q 008560 260 QALSFS-KENARAIGSRGGISSLLEICQAG--TPGSQAFAAGVLRNLAGFS-E-IKENFIEENAVMVLLGLVASG-TALA 333 (561)
Q Consensus 260 ~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~~-~-~r~~i~~~g~v~~Lv~lL~~~-~~~~ 333 (561)
.|-..+ .+.+....+.|+++.|...+.-+ +....+.......||.+.. + ......+...+..+++++.+. .++.
T Consensus 161 ~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 161 HNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred HHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccch
Confidence 887765 45778888999999999987644 3444566666667765533 3 244455677888888888654 3467
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCH-------HHHHHHHHHHHHhhcChhhHHHHHhcc-hHHH
Q 008560 334 QENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAV-------KSLEVAVELLSQLASCLPIAEVLVSDG-FVVR 405 (561)
Q Consensus 334 ~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~-------~~~e~a~~aL~~L~~~~~~~~~l~~~~-~i~~ 405 (561)
.+-....|...+.++. .+-.+++.|.++.++.+++.-.+- ..-..++....-|...++..+.+...+ +++.
T Consensus 241 ~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~ 319 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF 319 (604)
T ss_pred hhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence 7778888888877765 788899999999999999762111 122233444444445677788888876 8999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-----CCCHHHHHHHHHHHHHhhccccchhhHh
Q 008560 406 LVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-----GKAVEEKESAAKALSTLMLYAGNRKILR 480 (561)
Q Consensus 406 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~~ 480 (561)
++..+++.+...+..++-++.|++.++.++..+++.|.+.+|+..+. +++.+.|..++.+|+||+...+|+..|+
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 99999999999999999999999999999999999999999999986 3677889999999999999999999997
Q ss_pred hcCCCHHHHHHhccCC-ccchhhHHHHHHHHHhcCCch-HHHHHHH-cCchHHHHHhhccCcc
Q 008560 481 KDERGIVTVVQLLDPL-IQNLDKKYPVAILAALVHCRK-CRKQMVA-AGACLHLRKLVEMDIE 540 (561)
Q Consensus 481 ~~~~~i~~Lv~lL~~~-~~~~~k~~a~~~L~~La~~~~-~r~~i~~-~g~i~~L~~Ll~~~~~ 540 (561)
+. |....++.+|..+ ++.+.| -++.+.-+..+.+ ...++.+ ..-++.|+.+.++++-
T Consensus 400 ~a-GvteaIL~~lk~~~ppv~fk--llgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 400 PA-GVTEAILLQLKLASPPVTFK--LLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF 459 (604)
T ss_pred cc-chHHHHHHHHHhcCCcchHH--HHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc
Confidence 64 5566677777655 333333 5566555543333 3333332 2345667777766543
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=1.4e-12 Score=126.59 Aligned_cols=194 Identities=19% Similarity=0.237 Sum_probs=171.0
Q ss_pred HhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc
Q 008560 189 VAQGVVPVLVKLMDS-SSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE 267 (561)
Q Consensus 189 ~~~g~v~~Lv~lL~~-~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 267 (561)
.+.+.+..|+.+|+. .+|.+++.+..++.+.+.++.++..+.+.| +++.+..+|.++++.+|+.|..+|.+++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~G--gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLG--GISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcC--CHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 567788999999985 479999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHhcCCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 268 NARAIGSRGGISSLLEICQAG--TPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
++..|-.+ ++.+++...+. +...+..++++|.||+..++.+..+. +.++.|+.+|.+|+..++..++.+|.||+
T Consensus 87 n~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 99887553 66666654443 67888999999999998888877774 47999999999999999999999999999
Q ss_pred CCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 346 SDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 346 ~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.... ..+.+...+++..++.+++...+.+....++....|+..
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9765 566677778999999999998777899999999999975
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=1.2e-11 Score=119.97 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=176.5
Q ss_pred HhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHH
Q 008560 273 GSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESL 351 (561)
Q Consensus 273 ~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 351 (561)
.+.+.++.|+.+|+. .+|..++.+..++.|.+..+.++..+.+.|+++.+..++.++++.+++.|+.+|.|++...+ +
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-N 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-h
Confidence 345668999999985 58999999999999999999999999999999999999999999999999999999998876 3
Q ss_pred HHHHHHhCcHHHHHHhhhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 352 KLLIVREGGIGSLKSYWDS-VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 352 r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
+..+-. .++.+++.+.+ ..+..++..++++|.+|+..++....+. +.++.++.+|..++..++..+.++|.+|+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 444422 46777765544 3345899999999999998776666664 479999999999999999999999999999
Q ss_pred CHHHHHHHHhCCChHHHHHhccCC-CHHHHHHHHHHHHHhhccccch-hhHhhcCCCHHHHHHhccC
Q 008560 431 NSKARKEMGECGCIGPLIKMLDGK-AVEEKESAAKALSTLMLYAGNR-KILRKDERGIVTVVQLLDP 495 (561)
Q Consensus 431 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~ 495 (561)
++.+.+.+..+++...++.+++.+ +.++-..+.....|+..+-... ..+.++...-..|..++..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e 230 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE 230 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc
Confidence 999999999999999999999864 5667777888888887544333 2233444555556644443
No 25
>PRK09687 putative lyase; Provisional
Probab=99.42 E-value=5.6e-11 Score=117.82 Aligned_cols=253 Identities=15% Similarity=0.050 Sum_probs=200.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.+..|+..|...+...|..|+..|..+- +...++.+..++.+.++.+|..++.+|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 5677889999999999999999886542 345678888999999999999999999998754332
Q ss_pred HhchhhHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh
Q 008560 231 AEGLLLLNHLIRV-LESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI 309 (561)
Q Consensus 231 ~~g~~~i~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~ 309 (561)
... +++.|..+ +++.++.+|..|+.+|.++....... ...+++.|...+.+.++.++..++.+|.++.
T Consensus 88 ~~~--a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 QDN--VFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred hHH--HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 234 78888877 67779999999999999986432111 1124566777888889999999999997553
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
...+++.|+.++.+.+..++..|+.+|..+...++ .+++.|+..+.+.+. .++..|+.+|+.+-.
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~-~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNE-EIRIEAIIGLALRKD 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCCh-HHHHHHHHHHHccCC
Confidence 34589999999999999999999999999955444 467788889977654 899999999988533
Q ss_pred ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHH
Q 008560 390 CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALS 467 (561)
Q Consensus 390 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~ 467 (561)
..+++.|++.|.+++ ++..|+.+|.++.. .-++|.|..++. ..+..++.+|.++|.
T Consensus 222 ----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 257899999998866 56778888887764 245899999997 789999999988875
No 26
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=1.1e-10 Score=115.80 Aligned_cols=255 Identities=13% Similarity=0.019 Sum_probs=195.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHH
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
.-.++.|..+|.+.+..++..|+.+|..+. ... +++.+..++++.++.+|..++++|..|......
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~--~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG----------GQD--VFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cch--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 456888999999999999999999998775 244 888899999999999999999999998654322
Q ss_pred HHHhcCCHHHHHHH-HhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 271 AIGSRGGISSLLEI-CQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 271 ~i~~~g~i~~Lv~l-l~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
....++.|..+ +.+.++.++..|+.+|.+++...... ...++..+...+.+++..++..++.+|.++..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 12356778777 66778899999999999996543211 23366678888888889999999999987642
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
..+++.|+.++.+.++ .++..|+.+|+.+.... ...++.|+..|.+.+..++..|+.+|.++-
T Consensus 158 --------~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 1378999999987665 89999999999984321 146788999999999999999999998754
Q ss_pred CCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHH
Q 008560 430 INSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAIL 509 (561)
Q Consensus 430 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L 509 (561)
. ..+++.|+..+++++ ++..++.+|..+.. ...++.|.++++..+....+..++.+|
T Consensus 221 ~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 221 D----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred C----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2 356899999998765 56678888876643 247888889997433333445566555
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=1.7e-09 Score=124.66 Aligned_cols=274 Identities=16% Similarity=0.092 Sum_probs=208.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.+..|+..|+.+++..|..|+..|..+. ..+.++.|+.+|+++++.++..|+.+|..+...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-------- 682 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEV-------- 682 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------
Confidence 4567888888889999999988886642 356789999999999999999999999776421
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhh
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIK 310 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r 310 (561)
.. ..+.|...|++.++.+|..|+.+|..+.. +....|+..+.+.++.++..|+.+|..+.
T Consensus 683 -~~--~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~------ 742 (897)
T PRK13800 683 -LP--PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD------ 742 (897)
T ss_pred -cC--chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc------
Confidence 12 34567788888999999999999887642 22456788899999999999999988752
Q ss_pred HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcC
Q 008560 311 ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASC 390 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~ 390 (561)
..+.|..++.+++..++..++.+|..+..... ..++.|..++.+.+ +.++..++.+|..+...
T Consensus 743 -------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 743 -------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPD-PLVRAAALAALAELGCP 805 (897)
T ss_pred -------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCC-HHHHHHHHHHHHhcCCc
Confidence 23456788899999999999999999866432 23678888887755 69999999999988543
Q ss_pred hhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 391 LPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 391 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
+ ..++.++..|.+.++.++..|+.+|..+.. ...++.|+.++.+++..||..|+.+|..+.
T Consensus 806 ~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 806 P---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred c---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 2 234668888998899999999999987753 234699999999999999999999998862
Q ss_pred ccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHH
Q 008560 471 LYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILA 510 (561)
Q Consensus 471 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~ 510 (561)
..+ ...+.|...|+.... ..+..|..+|.
T Consensus 867 ~~~----------~a~~~L~~al~D~d~-~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDP----------AARDALTTALTDSDA-DVRAYARRALA 895 (897)
T ss_pred CCH----------HHHHHHHHHHhCCCH-HHHHHHHHHHh
Confidence 111 234455667765433 34566666654
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.22 E-value=1.2e-08 Score=106.73 Aligned_cols=399 Identities=12% Similarity=0.065 Sum_probs=256.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcC-CcchHHH
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS--LEMKEKTVASIARVSMV-DSSKHVL 229 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~e~a~~~L~~La~~-~~~~~~i 229 (561)
.+++.++...+++...+|.....+++.+++++...+++.|+++.|..++...+ ++.+.....++..+... +.....+
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 45667777788888899999999999998888888899999999999998765 55665556666666544 5567788
Q ss_pred HHhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCchHHHH-Hh--cCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 230 IAEGLLLLNHLIRVLESGS-GFAKERACVALQALSFSKENARAI-GS--RGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i-~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
.+.+ .++.|.++|.+.+ ..+++...+++.++.+....+... .. ...++.+..+...........-+....+++.
T Consensus 92 L~~~--~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRII--ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHh--hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc
Confidence 8999 9999999999887 899999999999998865433322 22 2234444444442444445555556677777
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHH---HhcCCChHHHHHHH----HhCcHH--HHHHhhhcCCCHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLC---NLVSDDESLKLLIV----REGGIG--SLKSYWDSVSAVKS 376 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~---~L~~~~~~~r~~~~----~~g~i~--~Lv~lL~~~~~~~~ 376 (561)
..+.+.-+.+.|+...+.-++...+...+..|..++. ++..+++.....+. ..|+.+ .+.+++.+++. ..
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~-s~ 248 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF-SE 248 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc-cH
Confidence 7788888889999998888888778889999999999 77777664332222 233332 23333333222 22
Q ss_pred HHHHHHHHHHhhc-C-hh--------------------------------------------------hHHHHHhcchHH
Q 008560 377 LEVAVELLSQLAS-C-LP--------------------------------------------------IAEVLVSDGFVV 404 (561)
Q Consensus 377 ~e~a~~aL~~L~~-~-~~--------------------------------------------------~~~~l~~~~~i~ 404 (561)
+..++..|.++.. + .. ......+...++
T Consensus 249 ~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~ 328 (678)
T KOG1293|consen 249 RLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLK 328 (678)
T ss_pred HHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhh
Confidence 2333333332221 1 00 000000111111
Q ss_pred HHHHHh----------------------------------------------------cCCCHHHHHHHHHHHHHHcCCH
Q 008560 405 RLVNVL----------------------------------------------------NCGVLSVRIAAARAVSMLGINS 432 (561)
Q Consensus 405 ~Lv~lL----------------------------------------------------~~~~~~~~~~A~~aL~~L~~~~ 432 (561)
..++++ ...+.....+|+..+.+++.+-
T Consensus 329 ~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV 408 (678)
T KOG1293|consen 329 TTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSV 408 (678)
T ss_pred hHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHH
Confidence 111111 1222333334444444444432
Q ss_pred -HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc-cccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHH
Q 008560 433 -KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML-YAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILA 510 (561)
Q Consensus 433 -~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~ 510 (561)
..+.......++.+|++++..++..++..+.++++||.. .++-+..|+ ..+||..+..++...+.+ .+..++++|.
T Consensus 409 ~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s~~~~~~~n-~r~~~~~~Lr 486 (678)
T KOG1293|consen 409 SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILESMLTDPDFN-SRANSLWVLR 486 (678)
T ss_pred HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHHHhcCCCch-HHHHHHHHHH
Confidence 223334456789999999999999999999999999995 445566664 469999999999765443 4677999999
Q ss_pred Hhc-C-CchHHHHHHHcCchHHHHHhhccCccchH----HHHHhhccCcccc
Q 008560 511 ALV-H-CRKCRKQMVAAGACLHLRKLVEMDIEGAN----KLLESLGRGKIWG 556 (561)
Q Consensus 511 ~La-~-~~~~r~~i~~~g~i~~L~~Ll~~~~~~ak----k~~~~l~~~~~~~ 556 (561)
++. . ++.-+.+..+.=.-..+..+.+.++.+.. -+++-|-.|+..+
T Consensus 487 ~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 487 HLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred HHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 998 3 33344444444444556677766666533 5666666664433
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.21 E-value=3.3e-10 Score=97.52 Aligned_cols=118 Identities=26% Similarity=0.307 Sum_probs=109.0
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 271 AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
.+.+.|+++.|++++.++++..+..++.+|.+++.. ++.+..+++.|+++.+++++.+++..++..++++|.+++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456789999999999999999999999999999998 6888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
..+..+.+.|+++.|++++..++ ..+++.++.+|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 78888899999999999998874 5899999999999873
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=3.7e-10 Score=97.17 Aligned_cols=117 Identities=30% Similarity=0.343 Sum_probs=107.9
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
.+++.| +++.++.+|++++..++..++.+|.+++.. ++....+.+.|+++.|++++.+.++..+..|+++|+|++..
T Consensus 2 ~~~~~~--~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAG--GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcC--ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 356788 999999999999999999999999999997 67888888899999999999999999999999999999988
Q ss_pred c-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 307 S-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 307 ~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
. ..+..+.+.|+++.+++++.+++..+++.++.+|.+|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7 667778889999999999999999999999999999873
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=1e-08 Score=118.16 Aligned_cols=269 Identities=16% Similarity=0.082 Sum_probs=206.6
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
+.+.++.|+..|+++++.+|..|+.+|..+. ..+ +++.|+..|++.+..+|..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~--~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT----------PPG--FGPALVAALGDGAAAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---
Confidence 4567889999999999999999999998764 356 8999999999999999999999998874321
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
...+.|...+.+.++.++..|+.+|..+... -...|+..|.+.+..++..|+.+|..+..
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 1235777888889999999999999887422 23457788999999999999999987621
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
.+.|..++.+++ +.++..++.+|..+.... ...++.|..++.+.++.++..|+.+|.++.
T Consensus 744 -----------~~~l~~~l~D~~-~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDEN-REVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCC-HHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 244666676654 599999999999886531 124688889999999999999999998886
Q ss_pred CCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHH
Q 008560 430 INSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAIL 509 (561)
Q Consensus 430 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L 509 (561)
..+. .++.++..+.+.++.+|..|+.+|..+. ....++.|+.+|..+.. ..++.|+.+|
T Consensus 804 ~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~~-~VR~~A~~aL 862 (897)
T PRK13800 804 CPPD---------DVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDPHL-DVRKAAVLAL 862 (897)
T ss_pred Ccch---------hHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 4321 2356788888899999999999997653 23467889999966543 4567788888
Q ss_pred HHhcCCchHHHHHHHcCchHHHHHhhccCccchH
Q 008560 510 AALVHCRKCRKQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 510 ~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
..+..++.. .+.|.+.++.++++.+
T Consensus 863 ~~~~~~~~a---------~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 863 TRWPGDPAA---------RDALTTALTDSDADVR 887 (897)
T ss_pred hccCCCHHH---------HHHHHHHHhCCCHHHH
Confidence 886444443 4557788877776654
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.17 E-value=8.6e-08 Score=99.18 Aligned_cols=321 Identities=14% Similarity=0.087 Sum_probs=226.9
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVA-----QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD 223 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-----~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~ 223 (561)
..+..++..++. ...+.....+.-+..++.+++.....+.+ .....+++.+|..++.-++..+..+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 345555555543 44555666666666777776655555544 356777888998888889999999999887532
Q ss_pred c-chHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcC--ChHHHHHHHHH
Q 008560 224 S-SKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAG--TPGSQAFAAGV 299 (561)
Q Consensus 224 ~-~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~A~~a 299 (561)
. ........- .++-+...|+++ +...+..++.+|..|...++.|..+.+.++++.|+.+++.. +...+..++-+
T Consensus 133 ~~~~~~~~l~~--~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGSDLDY--YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchhHHHH--HHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 2 111111112 344556666654 57778889999999999999999999988999999999864 34678999999
Q ss_pred HHHhhCCchhhHHHHhhhhHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCC------hHHHHHHHHhCcHHHHHHhhhc--
Q 008560 300 LRNLAGFSEIKENFIEENAVMVLLGLVASGT-ALAQENVFGCLCNLVSDD------ESLKLLIVREGGIGSLKSYWDS-- 370 (561)
Q Consensus 300 L~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~------~~~r~~~~~~g~i~~Lv~lL~~-- 370 (561)
+|-|+..++....+.+.+.++.++++++... +.+..-++.+|.|+...+ ......++..|..+ ++..|..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 9999999888788888899999999997544 468888999999999853 12334555556554 4455543
Q ss_pred CCCHHHHHH-------HHHHHHHhhcCh------------------------hhHHHHHhcc--hHHHHHHHhc-CCCHH
Q 008560 371 VSAVKSLEV-------AVELLSQLASCL------------------------PIAEVLVSDG--FVVRLVNVLN-CGVLS 416 (561)
Q Consensus 371 ~~~~~~~e~-------a~~aL~~L~~~~------------------------~~~~~l~~~~--~i~~Lv~lL~-~~~~~ 416 (561)
-+|+++.+. --.-+..+++++ ++...+-+.+ .+..|+++|. +.++.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 234333322 122223333333 2455555553 4789999995 44566
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 417 VRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 417 ~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
+..-|+.=++.++. .|+.+..+.+.|+=..+++++..+++++|..|..++..|..+.
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 66677777888887 5788888888999999999999999999999999998886543
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.16 E-value=3.3e-08 Score=108.10 Aligned_cols=373 Identities=17% Similarity=0.124 Sum_probs=251.9
Q ss_pred cccccccccc-----CCCchHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC
Q 008560 131 SGVLQDGVVS-----SGSKREAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS 205 (561)
Q Consensus 131 N~tLr~li~~-----~~~~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 205 (561)
|++++++.-. .+...+...-.+..+...|+++++..+.-|+..+.++. +++.. .-.++.+..++.+++
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~-----~~l~~~v~~ll~~~~ 127 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA-----EPLIPDVIKLLSDPS 127 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH-----HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh-----hHHHHHHHHHhcCCc
Confidence 4555554332 23344445557788889999999999999999998876 22222 235788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHH
Q 008560 206 LEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEIC 285 (561)
Q Consensus 206 ~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll 285 (561)
+.+|..|+.++..+...... .+..+ .++.+.++|.+.++.++..|+.++..+..+++.... .-+..++.|..++
T Consensus 128 ~~VRk~A~~~l~~i~~~~p~---~~~~~--~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~-~~~~~~~~L~~~l 201 (526)
T PF01602_consen 128 PYVRKKAALALLKIYRKDPD---LVEDE--LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS-LIPKLIRILCQLL 201 (526)
T ss_dssp HHHHHHHHHHHHHHHHHCHC---CHHGG--HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCHH---HHHHH--HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh-hHHHHHHHhhhcc
Confidence 99999999999988643211 22233 588889999999999999999999999111111111 1123455566666
Q ss_pred hcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHH
Q 008560 286 QAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLK 365 (561)
Q Consensus 286 ~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv 365 (561)
...+|..+...++.|..++........- ...++.+..++.+.+..+...++.++..+....+ .-..+++.|.
T Consensus 202 ~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~ 273 (526)
T PF01602_consen 202 SDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLI 273 (526)
T ss_dssp TCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHH
Confidence 7889999999999999998765322211 5678888999988888999999999998887644 4456788999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh
Q 008560 366 SYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGINSKARKEMGECGCI 444 (561)
Q Consensus 366 ~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i 444 (561)
+++. .+++.++..++..|..++... ...+ . .....+..+. +.+..++..+..+|.+++.. ++.+. ++
T Consensus 274 ~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~-~n~~~-----Il 341 (526)
T PF01602_consen 274 KLLS-SSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANE-SNVKE-----IL 341 (526)
T ss_dssp HHHT-SSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H-HHHHH-----HH
T ss_pred HHhh-cccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccc-cchhh-----HH
Confidence 9998 455689999999999999732 1222 2 2233344555 77889999999999999863 33333 36
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHH
Q 008560 445 GPLIKMLD-GKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQM 522 (561)
Q Consensus 445 ~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i 522 (561)
+.|...+. .+++..+..+...+..++...+... ...+..+++++...+... ...++..+.++. ..++.+..+
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~~-~~~~~~~i~~ll~~~~~~~~~~ 415 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDYV-SNEIINVIRDLLSNNPELREKI 415 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGGC-HCHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-----HHHHHHHHHhhhhccccc-cchHHHHHHHHhhcChhhhHHH
Confidence 77888884 5578899999999999885433221 135667888886543322 344666666665 455555544
Q ss_pred HHcCchHHHHHhhcc-CccchHHHHH
Q 008560 523 VAAGACLHLRKLVEM-DIEGANKLLE 547 (561)
Q Consensus 523 ~~~g~i~~L~~Ll~~-~~~~akk~~~ 547 (561)
+..|.++++. ..+.+++.+-
T Consensus 416 -----l~~L~~~l~~~~~~~~~~~~~ 436 (526)
T PF01602_consen 416 -----LKKLIELLEDISSPEALAAAI 436 (526)
T ss_dssp -----HHHHHHHHTSSSSHHHHHHHH
T ss_pred -----HHHHHHHHHHhhHHHHHHHHH
Confidence 5556666543 4445544443
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.09 E-value=3.3e-08 Score=102.26 Aligned_cols=275 Identities=15% Similarity=0.077 Sum_probs=199.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcchHHHHH
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVDSSKHVLIA 231 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~~~~~~i~~ 231 (561)
..++..|+.++......|+.-|..++..+..+.......-.+..|...|+++ +...+.-++.+|..|...+++|..+.+
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~ 183 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL 183 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH
Confidence 4455566777777788888888887765443221111111334555666654 367888899999999999999999999
Q ss_pred hchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHHHHHHhhCCc-
Q 008560 232 EGLLLLNHLIRVLESG--SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGT-PGSQAFAAGVLRNLAGFS- 307 (561)
Q Consensus 232 ~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~A~~aL~nLs~~~- 307 (561)
.+ +++.|+.+|+.. +...+.+++-+++-|+.+++........+.|+.|+++++... ..+.+.+..+|+||...+
T Consensus 184 ~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 184 AD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred cc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 99 999999999874 568899999999999999887777777899999999998753 456789999999998743
Q ss_pred ------hhhHHHHhhhhHHHHHHHhhc--CCHHH-------HHHHHHHHHHhcCCCh-----------------------
Q 008560 308 ------EIKENFIEENAVMVLLGLVAS--GTALA-------QENVFGCLCNLVSDDE----------------------- 349 (561)
Q Consensus 308 ------~~r~~i~~~g~v~~Lv~lL~~--~~~~~-------~~~a~~~L~~L~~~~~----------------------- 349 (561)
.....|++.|..+.+-.+... .++++ .+.--.-+..+++.++
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 244566777766554444432 12222 2222233344443322
Q ss_pred HHHHHHHHhC--cHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 008560 350 SLKLLIVREG--GIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVS 426 (561)
Q Consensus 350 ~~r~~~~~~g--~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 426 (561)
++-..+-+.+ .+..|+++|+.++++.....|+.=|+.+++ +|+++..+-+.|+=..+++++.+.+++++.+|..++.
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1112222222 478999999877777889999999999998 8899988888899999999999999999999999988
Q ss_pred HHc
Q 008560 427 MLG 429 (561)
Q Consensus 427 ~L~ 429 (561)
.|.
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 774
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.08 E-value=6.9e-08 Score=105.56 Aligned_cols=333 Identities=15% Similarity=0.144 Sum_probs=235.6
Q ss_pred hHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008560 145 REAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 145 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~ 224 (561)
.+-....++.+...+.++++..|..|+..+..+.+.+++... .. .++.+..+|.+.++.++..|+.++..+..+++
T Consensus 109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHH
T ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcc
Confidence 344455677778888899999999999999999887665331 23 69999999999999999999999999911111
Q ss_pred chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 225 SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
.... .-.. .+..|.+++...++-.+....+.|..++........- ...++.+..++.+.++.+...|+.++.++.
T Consensus 185 ~~~~-~~~~--~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 185 SYKS-LIPK--LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHTT-HHHH--HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhh-hHHH--HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 1011 1233 5666667777889999999999999887754322200 346888888888888889999999999888
Q ss_pred CCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 305 GFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 305 ~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
..+. .-..+++.|+.++.+.+..++..++.+|..++...+ . .+. .....+..+..+++..++..++.+|
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~-~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---P-AVF--NQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---H-HHG--THHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---h-hhh--hhhhhhheecCCCChhHHHHHHHHH
Confidence 7655 445788999999999888999999999999998762 1 222 3334455666566678999999999
Q ss_pred HHhhcChhhHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 008560 385 SQLASCLPIAEVLVSDGFVVRLVNVL-NCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESA 462 (561)
Q Consensus 385 ~~L~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A 462 (561)
..++.. .+... +++.|...+ ...+...+..++..+..++. .+...+. ++..++.++...++.+...+
T Consensus 329 ~~l~~~-~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~~~~~ 397 (526)
T PF01602_consen 329 YKLANE-SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYVSNEI 397 (526)
T ss_dssp HHH--H-HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGCHCHH
T ss_pred hhcccc-cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccccchH
Confidence 999973 33222 567888888 44477899999999999885 2222222 25777888887666677777
Q ss_pred HHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 463 AKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 463 ~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
...+..+....++.+. ..+..+++.+..-.....+..+++++...+
T Consensus 398 ~~~i~~ll~~~~~~~~-----~~l~~L~~~l~~~~~~~~~~~~~wilGEy~ 443 (526)
T PF01602_consen 398 INVIRDLLSNNPELRE-----KILKKLIELLEDISSPEALAAAIWILGEYG 443 (526)
T ss_dssp HHHHHHHHHHSTTTHH-----HHHHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcChhhhH-----HHHHHHHHHHHHhhHHHHHHHHHhhhcccC
Confidence 7777777754443322 246677777765433344555777777665
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.08 E-value=1.6e-08 Score=102.56 Aligned_cols=228 Identities=18% Similarity=0.192 Sum_probs=158.8
Q ss_pred CChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCcch-HHHHHhc----hhhHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008560 192 GVVPVLVKLMDS--SSLEMKEKTVASIARVSMVDSSK-HVLIAEG----LLLLNHLIRVLESGSGFAKERACVALQALSF 264 (561)
Q Consensus 192 g~v~~Lv~lL~~--~~~~~~e~a~~~L~~La~~~~~~-~~i~~~g----~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 264 (561)
+.+..++.+|.. ++.++....+..+..+..++..+ ..+.... ...+.++++++++++..++..|+..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445566666654 46889999999999887765544 3444311 1268999999999999999999999999987
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcC----ChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHh-----hcC--CHHH
Q 008560 265 SKENARAIGSRGGISSLLEICQAG----TPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLV-----ASG--TALA 333 (561)
Q Consensus 265 ~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL-----~~~--~~~~ 333 (561)
.......-...+.++.++..+.+. +...+..|+.+|.+|...++.|..+.+.|+++.+..++ .++ ...+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 654433332245678888877752 33456899999999999999999999999999999999 222 2378
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChh--hHHHHHhcchHHHHHHHhc
Q 008560 334 QENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLP--IAEVLVSDGFVVRLVNVLN 411 (561)
Q Consensus 334 ~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~--~~~~l~~~~~i~~Lv~lL~ 411 (561)
+.+++-|++-|++..+ ....+.+.+.++.|+++++....+++.+.++.+|.||...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999999999866 566678888999999999998888999999999999997554 7778877666665555443
Q ss_pred C--CCHHHHHH
Q 008560 412 C--GVLSVRIA 420 (561)
Q Consensus 412 ~--~~~~~~~~ 420 (561)
. .++++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 2 24454443
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.04 E-value=1.5e-07 Score=98.73 Aligned_cols=371 Identities=14% Similarity=0.080 Sum_probs=245.8
Q ss_pred HhHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcch
Q 008560 150 AESRNLITRLQI--GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS-LEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 150 ~~v~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~~~~~~ 226 (561)
..++.+...++. +..+.+.+....+..+..+.......+.+.+..+.|..+|.+++ ..+.+..++.+..+-......
T Consensus 51 GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q 130 (678)
T KOG1293|consen 51 GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ 130 (678)
T ss_pred cchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc
Confidence 356666666654 45667767777777777787778888899999999999999998 778999999999988765433
Q ss_pred HHHH---HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHH--
Q 008560 227 HVLI---AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLR-- 301 (561)
Q Consensus 227 ~~i~---~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~-- 301 (561)
.... ... .+..+..++..........-+....+++...+.+....++|+.+.+.-++...+...+..|...+.
T Consensus 131 ~~~~s~~~~s--Ii~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~ 208 (678)
T KOG1293|consen 131 DKKMSLHLKS--IIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRG 208 (678)
T ss_pred ccchhhhHHH--HHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhcc
Confidence 2222 233 566665555534444455555566666666777777788888888877777767788888888888
Q ss_pred -HhhCCc-hhhHHH----HhhhhHH--HHHHHhhcCCHHHHHHHHHHHHHhcCCC--------h----------------
Q 008560 302 -NLAGFS-EIKENF----IEENAVM--VLLGLVASGTALAQENVFGCLCNLVSDD--------E---------------- 349 (561)
Q Consensus 302 -nLs~~~-~~r~~i----~~~g~v~--~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--------~---------------- 349 (561)
++..++ .....+ .+.|..+ ..-+++.+++...+..++.|+.++...+ +
T Consensus 209 ~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~ 288 (678)
T KOG1293|consen 209 DRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNC 288 (678)
T ss_pred ceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhh
Confidence 655544 333322 3445554 4555666666666777777777665433 0
Q ss_pred ---------------------------HHHHHHHHhCcHHHHHHhhhcC-------------------------------
Q 008560 350 ---------------------------SLKLLIVREGGIGSLKSYWDSV------------------------------- 371 (561)
Q Consensus 350 ---------------------------~~r~~~~~~g~i~~Lv~lL~~~------------------------------- 371 (561)
.++....++..++..++++...
T Consensus 289 i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~ 368 (678)
T KOG1293|consen 289 IVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS 368 (678)
T ss_pred heeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh
Confidence 0001111122233333333211
Q ss_pred --------------------CCHHHHHHHHHHHHHhhcC-hhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 372 --------------------SAVKSLEVAVELLSQLASC-LPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 372 --------------------~~~~~~e~a~~aL~~L~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
.|......++-.+.+++++ ..-+..+-...+..++|+++..++..++..+.++|+||.-
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 0112333344444444431 1112223334789999999999999999999999999997
Q ss_pred -CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHH
Q 008560 431 -NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAIL 509 (561)
Q Consensus 431 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L 509 (561)
-...+..+.+.|+|..+..++.+.++.++..+.++|++++.+..+...+.-..+--...+..+.+.+....++++...|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999877776555433333344454453333445678899999
Q ss_pred HHhc-CCchHHHHH
Q 008560 510 AALV-HCRKCRKQM 522 (561)
Q Consensus 510 ~~La-~~~~~r~~i 522 (561)
.||+ ++.+.-.-+
T Consensus 529 RNl~c~~~~svdfl 542 (678)
T KOG1293|consen 529 RNLTCNSRKSVDFL 542 (678)
T ss_pred HHhhcCcHHHHHHH
Confidence 9997 444443333
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.2e-07 Score=99.71 Aligned_cols=256 Identities=17% Similarity=0.185 Sum_probs=206.3
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-cCchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC-Ccch
Q 008560 151 ESRNLITRLQIG-SAESKNSAMDSLLGLLQ-EDDKNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMV-DSSK 226 (561)
Q Consensus 151 ~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~-~~~~ 226 (561)
.+..|+..|+.. ++..+.+|+..|.+.+. .+++....+--.-.||.|+.+|+.. +.++...|+++|.+|... +...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 677888999875 77788999999987765 5555555444567899999999876 599999999999999865 7788
Q ss_pred HHHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 227 HVLIAEGLLLLNHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
..+++++ +||.|+.-|.. .-.++.+++..+|..|+..+. .+|.+.|++...+..+...+..+++.|+.+..|.|.
T Consensus 248 a~vV~~~--aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEH--AIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeeccc--chHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999 99999875544 578899999999999987632 367789999999999999999999999999999997
Q ss_pred Cc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---ChHHHHHHHHhCcHHHHHHhhhcCC---CHHHH
Q 008560 306 FS--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD---DESLKLLIVREGGIGSLKSYWDSVS---AVKSL 377 (561)
Q Consensus 306 ~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~r~~~~~~g~i~~Lv~lL~~~~---~~~~~ 377 (561)
.- +--..++ .++|.|..+|+..+....+.++-|+..++.. +++.=+.++..|.|.....++.... +..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 43 3334443 4899999999999999999999999999863 4555577888999888888875432 22455
Q ss_pred HHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC
Q 008560 378 EVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC 412 (561)
Q Consensus 378 e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~ 412 (561)
...++.|..+|. ++-.+..+...++...|..+|..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 667788888886 78889999888999999888854
No 39
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-06 Score=97.91 Aligned_cols=374 Identities=16% Similarity=0.137 Sum_probs=213.3
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHh
Q 008560 154 NLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAE 232 (561)
Q Consensus 154 ~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~ 232 (561)
.++..++++ .+..|.+-++.+..++++.-.- + =.+.++.|+...+++++..||.|+.+|..+...-.+...=.-.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~ 158 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD 158 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH
Confidence 345555543 3445666666666666542111 1 0366777888889999999999999999998543222110001
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHh-cCCHHHHHHHH----hcCChHHHHHHHHHHHHhhCC
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGS-RGGISSLLEIC----QAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~ll----~~~~~~~~~~A~~aL~nLs~~ 306 (561)
. ..+.+.+-+..++..+|..|++++...+... .++...-. ...+|.++..+ ..++...-..+..+|-.+...
T Consensus 159 ~--l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 159 D--LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES 236 (1075)
T ss_pred H--HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence 1 3444555555666559999999999887643 23332222 23456555554 455665556666666666543
Q ss_pred c-hh-hHHHHhhhhHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCChHHHHHHH--------------------------
Q 008560 307 S-EI-KENFIEENAVMVLLGLVASG--TALAQENVFGCLCNLVSDDESLKLLIV-------------------------- 356 (561)
Q Consensus 307 ~-~~-r~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~r~~~~-------------------------- 356 (561)
. .. +..+. .++..-..+..+. ++.+|..|+.+|..++...+..++...
T Consensus 237 ~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 237 EPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred chHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 2 21 22111 1222222222221 224444444444444433221111111
Q ss_pred ------------------------HhC---cHHHHHH----hhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHH
Q 008560 357 ------------------------REG---GIGSLKS----YWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVV 404 (561)
Q Consensus 357 ------------------------~~g---~i~~Lv~----lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~ 404 (561)
.-| +.+++.. ++.+.+ ..-+..++.+|..++. +.+...... ..+++
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~ 392 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNL-PKILP 392 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHH
Confidence 112 1233332 233332 3567778888887774 444332211 25788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhhccccchhhHhh
Q 008560 405 RLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDG-KAVEEKESAAKALSTLMLYAGNRKILRK 481 (561)
Q Consensus 405 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 481 (561)
.++..|.+.++.||..|+.++..++.+ ++..+..-+ -..+.|+..+.+ ++++++..|+.+|.+++........- .
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e-~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~-p 470 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE-RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE-P 470 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH-H
Confidence 888899999999999999999999984 666555543 356688888874 78899999999999998655433221 1
Q ss_pred cCCCH-HHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCc
Q 008560 482 DERGI-VTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDI 539 (561)
Q Consensus 482 ~~~~i-~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~ 539 (561)
--.++ ..++.+|..++....++.+++++.+.+...+..-.=.=.-.++.|.+.+...+
T Consensus 471 YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 11222 22555555544556788899999998743332211111223566777776544
No 40
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.5e-07 Score=98.81 Aligned_cols=324 Identities=18% Similarity=0.189 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhhccCchhhHHHHh----cCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHH
Q 008560 167 KNSAMDSLLGLLQEDDKNVVIAVA----QGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLI 241 (561)
Q Consensus 167 ~~~Al~~L~~l~~~~~~~~~~i~~----~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv 241 (561)
..-++.+|.++.+.+++....+.. -|..+.+...+... ++.++.-|+.++..+..+.++...++..| ++..|+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~--vL~~LL 1819 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCN--VLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhh--HHHHHH
Confidence 345888999999988866555433 37778888877654 58899999999999999999999999999 999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHH-HhcCChHHHHHHHHHHHHhhCCc--hhhHHHHhhhh
Q 008560 242 RVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEI-CQAGTPGSQAFAAGVLRNLAGFS--EIKENFIEENA 318 (561)
Q Consensus 242 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~ 318 (561)
.+|.+. +..|+.+..+|..|+.+.+..+.-.++|++..+..+ |.+.++..+..++..|..+..++ .-|..|.-...
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 999764 456899999999999999988888899998888875 45567788888999999987654 22222211111
Q ss_pred H------------HHHHHHhhcCCH--H------HHHHHHHHHHHhcC--------------------------------
Q 008560 319 V------------MVLLGLVASGTA--L------AQENVFGCLCNLVS-------------------------------- 346 (561)
Q Consensus 319 v------------~~Lv~lL~~~~~--~------~~~~a~~~L~~L~~-------------------------------- 346 (561)
+ +..++.+...++ + .+...-..+..+..
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 1 233444432211 1 11111122222211
Q ss_pred CChHHHHHHHH------------hCcHHHHHHhhhcCCC-HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC
Q 008560 347 DDESLKLLIVR------------EGGIGSLKSYWDSVSA-VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC 412 (561)
Q Consensus 347 ~~~~~r~~~~~------------~g~i~~Lv~lL~~~~~-~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~ 412 (561)
+..-+|+.+.+ .|.++.++.++...++ ....+.-..++..|.+ +|.-.+.+-..|.+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 00112332222 2334555555544322 1233334444455554 77777777777999999998877
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhc---CCCHHHH
Q 008560 413 GVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKD---ERGIVTV 489 (561)
Q Consensus 413 ~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~---~~~i~~L 489 (561)
.+..+-..|.++|..|+.++-+.++|....++..++..+.. .+..---|+++|..+.. .++.+++.. .+-|+.|
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~--r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMK--RNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHH--HhHHHHHHHHhccCcHHHH
Confidence 66666788999999999999999999999888888888873 33344478899988876 445555432 3568999
Q ss_pred HHhccCC
Q 008560 490 VQLLDPL 496 (561)
Q Consensus 490 v~lL~~~ 496 (561)
+++|+..
T Consensus 2136 L~LLd~~ 2142 (2235)
T KOG1789|consen 2136 LQLLDSS 2142 (2235)
T ss_pred HHHhccc
Confidence 9999864
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.93 E-value=2.6e-11 Score=94.38 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccccc
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSG 132 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~ 132 (561)
+|..|.|||+.++|.| ||....|+|| |++.|++||..++.+|| +|.+++. ..+++||+
T Consensus 1 iP~~f~CpIt~~lM~d----------PVi~~~G~ty---------er~~I~~~l~~~~~~~P--~t~~~l~-~~~l~pn~ 58 (73)
T PF04564_consen 1 IPDEFLCPITGELMRD----------PVILPSGHTY---------ERSAIERWLEQNGGTDP--FTRQPLS-ESDLIPNR 58 (73)
T ss_dssp SSGGGB-TTTSSB-SS----------EEEETTSEEE---------EHHHHHHHHCTTSSB-T--TT-SB-S-GGGSEE-H
T ss_pred CCcccCCcCcCcHhhC----------ceeCCcCCEE---------cHHHHHHHHHcCCCCCC--CCCCcCC-cccceECH
Confidence 5889999999999997 6999999999 99999999999999999 9988887 56899999
Q ss_pred cccccccc
Q 008560 133 VLQDGVVS 140 (561)
Q Consensus 133 tLr~li~~ 140 (561)
.||..|+.
T Consensus 59 ~Lk~~I~~ 66 (73)
T PF04564_consen 59 ALKSAIEE 66 (73)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=2.4e-07 Score=93.98 Aligned_cols=221 Identities=19% Similarity=0.162 Sum_probs=162.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh------cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVA------QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
.++..+ +.+.+.....+.-+..++.+++.....+.. .....++++++..+|.-++..|+.+|..+........
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 344444 456777778888888888888866666554 2368889999999999999999999999987765554
Q ss_pred HHHHhchhhHHHHHHHHhcC----CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh-----cC--ChHHHHHH
Q 008560 228 VLIAEGLLLLNHLIRVLESG----SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ-----AG--TPGSQAFA 296 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~-----~~--~~~~~~~A 296 (561)
.-...+ .++.++..|.+. +.+.+..++.+|.+|...++.|..+.+.|+++.|+.++. ++ +...+..+
T Consensus 141 ~~~~~~--~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 141 EKLVKE--ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA 218 (312)
T ss_dssp HHHHHH--HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred cchHHH--HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence 443366 889999888763 455678999999999999999999999999999999992 22 34567999
Q ss_pred HHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc-CCHHHHHHHHHHHHHhcCCChH-HHHHHHHhCcHHHHHHhhhc-CCC
Q 008560 297 AGVLRNLAGFSEIKENFIEENAVMVLLGLVAS-GTALAQENVFGCLCNLVSDDES-LKLLIVREGGIGSLKSYWDS-VSA 373 (561)
Q Consensus 297 ~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~-~r~~~~~~g~i~~Lv~lL~~-~~~ 373 (561)
+-++|.|+..++....+...+.++.|+++++. ..+.+..-++.+|.|+...++. +...++..|+++.+-.+... -+|
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~D 298 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSD 298 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SS
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999975 4557889999999999987654 56666776666655555544 244
Q ss_pred HHHH
Q 008560 374 VKSL 377 (561)
Q Consensus 374 ~~~~ 377 (561)
++..
T Consensus 299 edl~ 302 (312)
T PF03224_consen 299 EDLT 302 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=7.3e-06 Score=87.74 Aligned_cols=308 Identities=16% Similarity=0.178 Sum_probs=224.7
Q ss_pred chHHHHHhHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHh
Q 008560 144 KREAVRAESRNLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVS 220 (561)
Q Consensus 144 ~~~~~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La 220 (561)
+.+...+.|+.|+.++.+. -.+.|+.|+..|..+++ ++|..+. .-|.++|+..|... |++....++..+.++.
T Consensus 16 k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 16 KQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred ccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4445567899999999754 57889999999999876 4666554 55588899988654 6899999999999988
Q ss_pred cCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHH
Q 008560 221 MVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIG-SRGGISSLLEICQAGTPGSQAFAAGV 299 (561)
Q Consensus 221 ~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~A~~a 299 (561)
.+++.-..+-+.. .+-.-..| ..+.+. ..+-|..|+..+...+-.++..+...
T Consensus 92 ~~dd~~~v~dds~----------------qsdd~g~~----------iae~fik~qd~I~lll~~~e~~DF~VR~~aIqL 145 (970)
T KOG0946|consen 92 SHDDSPEVMDDST----------------QSDDLGLW----------IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQL 145 (970)
T ss_pred hcCcchhhcccch----------------hhhHHHHH----------HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHH
Confidence 7765322111110 00000111 112233 25667888888888888888888888
Q ss_pred HHHhhCCc--hhhHHHH-hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC---C
Q 008560 300 LRNLAGFS--EIKENFI-EENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS---A 373 (561)
Q Consensus 300 L~nLs~~~--~~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~---~ 373 (561)
|.+|-... +.+..+. -.-+|..|+.+|.+..+.++..++-.|+.++.+++.++..++-+++.+.|..++.... .
T Consensus 146 lsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 146 LSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 88875543 6776665 5579999999999999999999999999999999999999999999999999997632 2
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC---CCH--------HH--HHHHHHHHHHHcC--C-----H
Q 008560 374 VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC---GVL--------SV--RIAAARAVSMLGI--N-----S 432 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~---~~~--------~~--~~~A~~aL~~L~~--~-----~ 432 (561)
--+.+-|+..|-||-. +..+...+.+.+.||+|.++|.. ++. .+ ...+..++..+.. + .
T Consensus 226 gIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~ 305 (970)
T KOG0946|consen 226 GIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITH 305 (970)
T ss_pred cchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 2588999999999997 77778888888999999988852 221 11 1234455555554 1 2
Q ss_pred HHHHHHHhCCChHHHHHhccCC--CHHHHHHHHHHHHHhh-ccccchhhHhh
Q 008560 433 KARKEMGECGCIGPLIKMLDGK--AVEEKESAAKALSTLM-LYAGNRKILRK 481 (561)
Q Consensus 433 ~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~A~~aL~~L~-~~~~~~~~~~~ 481 (561)
.+++.|...+++..|+.++.+. +..++..+.-.+.... .+..|+..|..
T Consensus 306 q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 306 QNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 4567899999999999998854 4566777777777776 46677777754
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-07 Score=92.36 Aligned_cols=191 Identities=18% Similarity=0.130 Sum_probs=163.5
Q ss_pred ChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhh
Q 008560 289 TPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYW 368 (561)
Q Consensus 289 ~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL 368 (561)
+++.+..|..-|..++.+-+|-..++..|+...++..+++.+..+++.|+++|..+..+++..+..+.+.|+.+.|+.++
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 45666777777777877778888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC--CCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCCh
Q 008560 369 DSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC--GVLSVRIAAARAVSMLGIN-SKARKEMGECGCI 444 (561)
Q Consensus 369 ~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i 444 (561)
..+.+..++..|+.++..|-+ ++.+...+...++...|...|.+ .+...+..++..+..+... ......+...|..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 988777899999999999997 88899999988889999999988 4668888899999988873 4455566666777
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhccccchhhH
Q 008560 445 GPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKIL 479 (561)
Q Consensus 445 ~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 479 (561)
..+..+....+..+++.+..++..+......+.++
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~ 290 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSELSTRKEL 290 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchh
Confidence 78888887788889999998888888666555533
No 45
>PF05536 Neurochondrin: Neurochondrin
Probab=98.89 E-value=4.8e-06 Score=90.14 Aligned_cols=379 Identities=16% Similarity=0.080 Sum_probs=242.7
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---hhHHHHhcCChHHHHHhhcCC-------CHHHHHHHHHHHHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDK---NVVIAVAQGVVPVLVKLMDSS-------SLEMKEKTVASIARV 219 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~---~~~~i~~~g~v~~Lv~lL~~~-------~~~~~e~a~~~L~~L 219 (561)
..+.+.+..|+..+.+.|..++.-+.+++..++. .++.+.++=+...|-+||.++ ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4578889999998888999999999999987663 345677876689999999873 256788899999999
Q ss_pred hcCCcchHHHHHhchhhHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 008560 220 SMVDSSKHVLIAEGLLLLNHLIRVLESGSG-FAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAG 298 (561)
Q Consensus 220 a~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~ 298 (561)
+.+++....---.+ -||.|+.++.+++. .+...+..+|..++.+++.+..+.+.|+++.|++++.+ .+...+.|..
T Consensus 85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 98776532211135 79999999988877 99999999999999999999999999999999999988 6677899999
Q ss_pred HHHHhhCCchhhHHHH----hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHH-HHHHHHhC----cHHHHHHhhh
Q 008560 299 VLRNLAGFSEIKENFI----EENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESL-KLLIVREG----GIGSLKSYWD 369 (561)
Q Consensus 299 aL~nLs~~~~~r~~i~----~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-r~~~~~~g----~i~~Lv~lL~ 369 (561)
++.++.........-- -...++.+...+.......+...+..|.++-...+.. .+...... ....+..++.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 9999876543111100 1134555666666666677788888888887655311 11111222 3344455666
Q ss_pred cCCCHHHHHHHHHHHHHhhcChhhHHHHHh-c-----chHHHHHHHh---------------cCCCH-----------HH
Q 008560 370 SVSAVKSLEVAVELLSQLASCLPIAEVLVS-D-----GFVVRLVNVL---------------NCGVL-----------SV 417 (561)
Q Consensus 370 ~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~-~-----~~i~~Lv~lL---------------~~~~~-----------~~ 417 (561)
+...+..+..++.+...|... .+.+.+.. . .+.--++++. +.... .+
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~-~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i 320 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDL-LGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI 320 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHH-hChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence 655667788887777777642 11111111 1 1333333222 11111 12
Q ss_pred HHHHHHHHHHHcC------CHHHHHHHHh--CCChHHHHHhccC------CCHHHHHHHHHHHHHhhccccc--hhhHhh
Q 008560 418 RIAAARAVSMLGI------NSKARKEMGE--CGCIGPLIKMLDG------KAVEEKESAAKALSTLMLYAGN--RKILRK 481 (561)
Q Consensus 418 ~~~A~~aL~~L~~------~~~~~~~i~~--~g~i~~Lv~ll~~------~~~~v~~~A~~aL~~L~~~~~~--~~~~~~ 481 (561)
-+.....+.+-+. +++....+.. .+.+...+.+|++ +++..-..+.++|..-....++ |+++
T Consensus 321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-- 398 (543)
T PF05536_consen 321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-- 398 (543)
T ss_pred HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence 2222222222111 1222222222 2446666666652 1222444556666554444443 3444
Q ss_pred cCCCHHHHHHhccCCcc---------chhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhh
Q 008560 482 DERGIVTVVQLLDPLIQ---------NLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLV 535 (561)
Q Consensus 482 ~~~~i~~Lv~lL~~~~~---------~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll 535 (561)
.+-++.++++...+.. .....+-+.+|+.++..+++|+.+.++|+...|.+.+
T Consensus 399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHH
Confidence 2467778888755422 2345567888999999999999999999988777543
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.6e-07 Score=91.42 Aligned_cols=184 Identities=23% Similarity=0.189 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHH
Q 008560 247 GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGL 325 (561)
Q Consensus 247 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~l 325 (561)
.+.+-++.|..-|..+..+-+|...+...||..+|+..+.+.++..++.|+++|...+.++ ..+..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 3678888999999999998899999999999999999999999999999999999998866 888999999999999999
Q ss_pred hhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcch
Q 008560 326 VASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLAS-CLPIAEVLVSDGF 402 (561)
Q Consensus 326 L~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~ 402 (561)
+.+.++ .++..|+.++..+...++.....+...+|...|...+++. .+...+..++..+..|.. .....+.+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 986554 7889999999999999998999999999999999999984 567899999999999996 4455555555688
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 403 VVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 403 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
...+..+....+.++.+++..++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 8888888888889999999988887765
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=1.2e-05 Score=89.61 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=220.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.+.++-+.|++.+...|..+++.+......+.+. ..+.+-+++++.+.+.+++.-..-.+.+.+........+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 4566777788888888999999888776544322 234666777888888888888877787776533222222
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhh
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIK 310 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r 310 (561)
++..+.+=+++.++.+|..|.++|.++-.. .+.+. .++.+.+.+.+.++.+++.|+-++.++-....
T Consensus 106 -----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 106 -----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 678888888899999999999999887443 22221 46667778889999999999999999865432
Q ss_pred HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcC
Q 008560 311 ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASC 390 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~ 390 (561)
..+.+.|.++.|.+++.+.+..+..+|+.+|..+...++. + .-...+.+..|+..+...+ +-.+-..+.+|....
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~-l~l~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~-- 247 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-K-IESSNEWVNRLVYHLPECN-EWGQLYILELLAAQR-- 247 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-h-hHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHhcC--
Confidence 2334567889999999999999999999999999876542 1 1123444566666665543 356666666664432
Q ss_pred hhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 008560 391 LPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALST 468 (561)
Q Consensus 391 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~ 468 (561)
|...... ..++..+...|++.++.+.-.|++++.++... ++..+.+.. ...+.|+.++ ++++++|-.+...+..
T Consensus 248 P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~ 323 (746)
T PTZ00429 248 PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHA 323 (746)
T ss_pred CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHH
Confidence 2221111 25678888889999999999999999999863 343333221 1235667664 5677888888777766
Q ss_pred hhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchH
Q 008560 469 LMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKC 518 (561)
Q Consensus 469 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~ 518 (561)
+....+ ..| .. -+.......+. +...|...+.+|..|+.....
T Consensus 324 i~~~~P--~lf-~~--~~~~Ff~~~~D--p~yIK~~KLeIL~~Lane~Nv 366 (746)
T PTZ00429 324 LLVIFP--NLL-RT--NLDSFYVRYSD--PPFVKLEKLRLLLKLVTPSVA 366 (746)
T ss_pred HHHHCH--HHH-HH--HHHhhhcccCC--cHHHHHHHHHHHHHHcCcccH
Confidence 664332 223 22 13333233322 223466677777777644443
No 48
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.1e-06 Score=81.59 Aligned_cols=290 Identities=18% Similarity=0.151 Sum_probs=197.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHH-hcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHh
Q 008560 237 LNHLIRVLESGSGFAKERACVALQALSFSKENARAIG-SRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIE 315 (561)
Q Consensus 237 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~ 315 (561)
...++.+|.+.++.+|..|...+..++.. ..+.... ..-.++.|..++....+ ...|+.+|.|++..++.|..+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 45678899999999999999999999877 2222221 23457778888877655 67789999999999999999988
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHH------hCcHHHHHHhhhcCCC-HHHHHHHHHHHHHhh
Q 008560 316 ENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVR------EGGIGSLKSYWDSVSA-VKSLEVAVELLSQLA 388 (561)
Q Consensus 316 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~------~g~i~~Lv~lL~~~~~-~~~~e~a~~aL~~L~ 388 (561)
. .+..++..+.+.....-...++.|.|++..+......... .|.+.......+.+.. ..--....-++.||+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 7 7788888888887788899999999999988765544432 3344444455554322 134456778899999
Q ss_pred cChhhHHHHHhcch--HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 008560 389 SCLPIAEVLVSDGF--VVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKAL 466 (561)
Q Consensus 389 ~~~~~~~~l~~~~~--i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL 466 (561)
+++.+|..+.+... ++.++.+-..++.--+...+++|.|.|.+..+...+.. -.+..|..+|.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLl-------------- 225 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILL-------------- 225 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHh--------------
Confidence 99999999887643 33343333323333355678899999988777777666 33444444333
Q ss_pred HHhhccccchhhHhhcCCCHHHHHHhccCC----ccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhc-cCccc
Q 008560 467 STLMLYAGNRKILRKDERGIVTVVQLLDPL----IQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVE-MDIEG 541 (561)
Q Consensus 467 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~-~~~~~ 541 (561)
-|+....-.+ .|-.+.|.=+|+|... +....++..+-+|+-|+....+|+.+.+.|+.+.+..+=. .++++
T Consensus 226 -Plagpee~sE---Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 226 -PLAGPEELSE---EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred -hcCCccccCH---HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHH
Confidence 2221111111 1112444444888422 3445567789999999999999999999999998877653 35666
Q ss_pred hHHHHHhh
Q 008560 542 ANKLLESL 549 (561)
Q Consensus 542 akk~~~~l 549 (561)
..++-+++
T Consensus 302 ~~~ace~v 309 (353)
T KOG2973|consen 302 IREACEQV 309 (353)
T ss_pred HHHHHHHH
Confidence 66554443
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.3e-07 Score=95.04 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=173.4
Q ss_pred hhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhH
Q 008560 316 ENAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIA 394 (561)
Q Consensus 316 ~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~ 394 (561)
.-.||+|+.+|+.+.. ++...|+++|.+|+..-+.-...++++++|+.|+.-|..-....+.|.++.+|..+++ ..-
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHP 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hcc
Confidence 3589999999987655 8999999999999998887788899999999999888775556899999999999997 223
Q ss_pred HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc-
Q 008560 395 EVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML- 471 (561)
Q Consensus 395 ~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~- 471 (561)
.++.+.|.+...+.+|+=-+..+|..|..+..|.|.+ ++--..+.+ .+|.|..+++..+....+.++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 4677889999999999887889999999999999973 444455555 48999999998888888988888888883
Q ss_pred --cccchhhHhhcCCCHHHHHHhccCCcc-chhhHH--HHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccCccch
Q 008560 472 --YAGNRKILRKDERGIVTVVQLLDPLIQ-NLDKKY--PVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMDIEGA 542 (561)
Q Consensus 472 --~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~~~k~~--a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~~~~a 542 (561)
+.+++-.-+...+-|....+||.-.+. ...+.| .+..|..++ +++-.++.+...++...|..++......+
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSA 442 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCc
Confidence 334332222333567788888854321 112233 455566666 67999999999999999999987655443
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.71 E-value=2.1e-05 Score=79.08 Aligned_cols=323 Identities=16% Similarity=0.103 Sum_probs=225.6
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHH------hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAV------AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV 222 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~------~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~ 222 (561)
..+..++..+.. ..++...-.+.-+.....++......+- ..-.-++.+.+|...+.-+.+.+..++..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 345556666643 3344555566666666665543222221 123456778888888888888899999998865
Q ss_pred CcchHHHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc--CChHHHHHHHHH
Q 008560 223 DSSKHVLIAEGLLLLNHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQA--GTPGSQAFAAGV 299 (561)
Q Consensus 223 ~~~~~~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~A~~a 299 (561)
...+-...+-. --..-|-..+++ .+.+....++++|..+...++.|..+...+|+..|+..+.+ .+...+...+-+
T Consensus 145 g~~~~~~~e~~-~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELD-VYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 43322211111 023345556666 47788899999999999999999999999999999998853 356778999999
Q ss_pred HHHhhCCchhhHHHHhhhhHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCCh------HHHHHHHHhCcHHHHHHhhhcC-
Q 008560 300 LRNLAGFSEIKENFIEENAVMVLLGLVASGT-ALAQENVFGCLCNLVSDDE------SLKLLIVREGGIGSLKSYWDSV- 371 (561)
Q Consensus 300 L~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~------~~r~~~~~~g~i~~Lv~lL~~~- 371 (561)
+|-|+.++...+.+..-+.++.|.++++... +.+..-.+.++.|+....+ .....++..++.+.+-.+-+..
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 9999999988888878899999999997544 4688889999999998764 2334445555554444444433
Q ss_pred CCHHH-------HHHHHHHHHHhhcChh------------------------hHHHHHhc--chHHHHHHHhcCCC-HHH
Q 008560 372 SAVKS-------LEVAVELLSQLASCLP------------------------IAEVLVSD--GFVVRLVNVLNCGV-LSV 417 (561)
Q Consensus 372 ~~~~~-------~e~a~~aL~~L~~~~~------------------------~~~~l~~~--~~i~~Lv~lL~~~~-~~~ 417 (561)
+|++. ++.--.....|+++++ +...+-+. ..+..|+++|...+ +.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 33222 2222233334444432 44555554 45889999998665 666
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 418 RIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 418 ~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
-..|+.=+..+.. .|+.+..+.+.|+=..++.++..++++||-.|..++..|..+.
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 6667777777776 6899999999999999999999999999999999998887543
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.68 E-value=3.2e-06 Score=84.88 Aligned_cols=230 Identities=18% Similarity=0.130 Sum_probs=176.2
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 008560 199 KLMDS-SSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES--GSGFAKERACVALQALSFSKENARAIGSR 275 (561)
Q Consensus 199 ~lL~~-~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 275 (561)
..+.+ .+++...-++++|..+...++.|-.++.+. ++..++..+.+ ++-..+.+..-+++-|+.++...+.+...
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~ad--g~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~ 240 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIAD--GVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRF 240 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCcchhheeeecC--cchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhc
Confidence 34444 457788889999999999999999999988 99999999943 37889999999999999999888888667
Q ss_pred CCHHHHHHHHhcCC-hHHHHHHHHHHHHhhCCc-------hhhHHHHhhhhHHHHHHHhhcC--CHH-------HHHHHH
Q 008560 276 GGISSLLEICQAGT-PGSQAFAAGVLRNLAGFS-------EIKENFIEENAVMVLLGLVASG--TAL-------AQENVF 338 (561)
Q Consensus 276 g~i~~Lv~ll~~~~-~~~~~~A~~aL~nLs~~~-------~~r~~i~~~g~v~~Lv~lL~~~--~~~-------~~~~a~ 338 (561)
+.|+.|.+++++.. ..+.+.++.+++|+.... +....|+..++.+.+=.+...+ +++ +++.--
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 89999999998764 456788999999998766 3344566655555554444322 222 233333
Q ss_pred HHHHHhcCCChH-----------------------HHHHHHH--hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Chh
Q 008560 339 GCLCNLVSDDES-----------------------LKLLIVR--EGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLP 392 (561)
Q Consensus 339 ~~L~~L~~~~~~-----------------------~r~~~~~--~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~ 392 (561)
.-...|++.|+. +-..+-+ ...+..|+++|+..+++.....|+.=|+...+ .|+
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 444455554431 1111111 13688999999999888899999999999997 999
Q ss_pred hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 393 IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 393 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
++..+.+.|+=+.+.++|.+.+++++.+|..++..|..
T Consensus 401 gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 401 GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887753
No 52
>PTZ00429 beta-adaptin; Provisional
Probab=98.68 E-value=8.9e-05 Score=82.74 Aligned_cols=255 Identities=17% Similarity=0.118 Sum_probs=161.3
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHV 228 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~ 228 (561)
...+..+.+.+...++..|..|+.++..+-..+++ .+.+.|.++.|..+|.+.++.+..+|+.+|..+....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 34456667777888999999999999998776653 3346789999999999999999999999999997543322 2
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS- 307 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~- 307 (561)
-...+ .+..|+..|..-+.-.+.....+|.... +..... ....+..+...+++.++.+.-.|++++.++....
T Consensus 215 ~l~~~--~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 215 ESSNE--WVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred HHHHH--HHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 23455 6777888887767666776666665432 221111 1245677778888899999999999999998642
Q ss_pred -hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhh--cCCCHHHHHHHHHHH
Q 008560 308 -EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWD--SVSAVKSLEVAVELL 384 (561)
Q Consensus 308 -~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~--~~~~~~~~e~a~~aL 384 (561)
+.... +-.....+++.++ +.+.+++..++..+..+....+. ++. .-++.+. ..++..++...+.+|
T Consensus 289 ~~~~~~-~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~----lf~-----~~~~~Ff~~~~Dp~yIK~~KLeIL 357 (746)
T PTZ00429 289 QELIER-CTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPN----LLR-----TNLDSFYVRYSDPPFVKLEKLRLL 357 (746)
T ss_pred HHHHHH-HHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHH----HHH-----HHHHhhhcccCCcHHHHHHHHHHH
Confidence 22111 1123446677764 45567888888887777664432 111 1122221 112234566666666
Q ss_pred HHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 385 SQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 385 ~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
..|+.. ++... ++.-|.++..+.+.+.+..++.++.+++.
T Consensus 358 ~~Lane-~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 358 LKLVTP-SVAPE-----ILKELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHHcCc-ccHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 666642 22222 22444455555555666666666666654
No 53
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.63 E-value=2.8e-06 Score=85.76 Aligned_cols=264 Identities=16% Similarity=0.187 Sum_probs=190.9
Q ss_pred HHHHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 008560 186 VIAVAQGVVPVLVKLMDSSSL--EMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLE-SGSGFAKERACVALQAL 262 (561)
Q Consensus 186 ~~i~~~g~v~~Lv~lL~~~~~--~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~L 262 (561)
..|...|++..|++++.+++. .++.+|...|-.+.. .++++.++.-| ...++.+-+ ...++.....+.+|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~---~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG---LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc---chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 345568999999999999874 458889888877653 45777777765 333333333 34788888999999999
Q ss_pred cCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHH
Q 008560 263 SFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASGTALAQENVFG 339 (561)
Q Consensus 263 s~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~ 339 (561)
..++ +.+..+++.|++..++--|+..+|.....|+-+|.|.+... +.+++|++..+-+-|+-+-.+.++-.+.+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 8865 57788899999999999999999999999999999998755 88999999999999999988888889999999
Q ss_pred HHHHhcCCChHHHHHHHHhCc---HHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh---cchHHHHHHHhcCC
Q 008560 340 CLCNLVSDDESLKLLIVREGG---IGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS---DGFVVRLVNVLNCG 413 (561)
Q Consensus 340 ~L~~L~~~~~~~r~~~~~~g~---i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~---~~~i~~Lv~lL~~~ 413 (561)
+.+-|+...+ .-+.+.+.|. +++++..++.+.- ++ ......+ ..-+++|+-+|++.
T Consensus 330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~F--------------AR---D~hd~aQG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 330 AVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRF--------------AR---DAHDYAQGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchh--------------hh---hhhhhhccCChHHHHHhhhhhhcc
Confidence 9999988765 5556666664 5666666655321 11 0000111 13478889999865
Q ss_pred CHHHHHHHHHHHHHHcC--CH-HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 414 VLSVRIAAARAVSMLGI--NS-KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 414 ~~~~~~~A~~aL~~L~~--~~-~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
--+.+--++.-++.=+. +. .-.+.+.+-|+|+.|-.+..+.+......|.++|..+-.
T Consensus 392 R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 392 RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 44544443332222111 12 233456677999999999887666666778888887764
No 54
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.1e-05 Score=73.29 Aligned_cols=337 Identities=15% Similarity=0.124 Sum_probs=229.7
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhh----HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNV----VIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS 225 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~----~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~ 225 (561)
...++|-..|...+...|.-++..+..+..+++.|. ..++..|..+.++..+...+.++...|...+..++..+..
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 345556666667777788889999999998888554 2345789999999999999999999999999999998888
Q ss_pred hHHHHHhchhhHHHH--HHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHH
Q 008560 226 KHVLIAEGLLLLNHL--IRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLR 301 (561)
Q Consensus 226 ~~~i~~~g~~~i~~L--v~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~ 301 (561)
-..+.... ....+ ..+--..+.-+|......+..+..- ++.....-..|.+..|..-++. .+.-+...+....+
T Consensus 162 leaiFeSe--llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESE--LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccc--cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 88887766 44433 3333344556677788888887664 4555555567777777666654 56667788999999
Q ss_pred HhhCCchhhHHHHhhhhHHHHHHHhhcCCH--HHHHHHHHHHHHhcCCChH---HHHHHHHh--CcHHHHHHhhhcCCCH
Q 008560 302 NLAGFSEIKENFIEENAVMVLLGLVASGTA--LAQENVFGCLCNLVSDDES---LKLLIVRE--GGIGSLKSYWDSVSAV 374 (561)
Q Consensus 302 nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~~~~---~r~~~~~~--g~i~~Lv~lL~~~~~~ 374 (561)
.|+..+..|+.+.++|.+..+..++...+. --+..++.....+-....- .-+.+++. -.|+...++++. +++
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm-nDp 318 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM-NDP 318 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc-CCc
Confidence 999999999999999999999999874332 2233333333333221100 00111111 123333344444 345
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcch--HHHHHHHhcCCC-HHHHHHHHHHHHHHcCC----HH----------HHHH
Q 008560 375 KSLEVAVELLSQLASCLPIAEVLVSDGF--VVRLVNVLNCGV-LSVRIAAARAVSMLGIN----SK----------ARKE 437 (561)
Q Consensus 375 ~~~e~a~~aL~~L~~~~~~~~~l~~~~~--i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~----~~----------~~~~ 437 (561)
..++.|+.+++.|-++.++.+.+...|- ..+++.-.-+.+ ..-++.+..+|.+++.. ++ .+..
T Consensus 319 daieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl 398 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL 398 (524)
T ss_pred hHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence 8999999999999999999999888753 566665443333 34577788888888751 11 1111
Q ss_pred HH----h---CCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHH
Q 008560 438 MG----E---CGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTV 489 (561)
Q Consensus 438 i~----~---~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~L 489 (561)
+. + ..-...+..+++...++++..+...+..++..++..+++...++-|..+
T Consensus 399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiV 457 (524)
T KOG4413|consen 399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIV 457 (524)
T ss_pred HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeee
Confidence 11 1 1234556667777899999999999999998888887775544444433
No 55
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00043 Score=77.84 Aligned_cols=323 Identities=15% Similarity=0.121 Sum_probs=198.3
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc-chHHHHHhchh
Q 008560 159 LQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMVDS-SKHVLIAEGLL 235 (561)
Q Consensus 159 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~~-~~~~i~~~g~~ 235 (561)
++.++.+.-..++..+..++...++.-+-.. ...|..-..+.++. +..+|..|+.+|..++.... ..+.....|..
T Consensus 215 i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~ 293 (1075)
T KOG2171|consen 215 IQDGDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHT 293 (1075)
T ss_pred hhccchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhcc
Confidence 3456665556777777777766665443221 12344444444444 47899999999999887621 12222223333
Q ss_pred hHHHHHHHHhcCCH----------------HHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHH
Q 008560 236 LLNHLIRVLESGSG----------------FAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGV 299 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~----------------~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~a 299 (561)
.++.+..++..... .-...|..+|-.++..=..+.. -.-.++.+-.++++.+..-+.+|+-+
T Consensus 294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 56666666543211 1234555666666554111110 01124445556778888889999999
Q ss_pred HHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHH
Q 008560 300 LRNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 300 L~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e 378 (561)
|..++.+. +.-.. .=..+++..+..|++.++.+|..|+.++..++.+-...-+.-..+-.++.|+..+++...++++.
T Consensus 372 ls~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~a 450 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQA 450 (1075)
T ss_pred HHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHH
Confidence 99887654 22222 12357788888899999999999999999999875444445556678889999999887789999
Q ss_pred HHHHHHHHhhc-ChhhHHHHHh--cchHHHHH-HHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhcc
Q 008560 379 VAVELLSQLAS-CLPIAEVLVS--DGFVVRLV-NVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLD 452 (561)
Q Consensus 379 ~a~~aL~~L~~-~~~~~~~l~~--~~~i~~Lv-~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~ 452 (561)
+|+.++.|+.. ++.. .+.. .+++.+++ .++.++++.+++.++.+|...+.. ....+.+ .-.+|.|...++
T Consensus 451 hAa~al~nf~E~~~~~--~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKS--ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHh
Confidence 99999999985 4322 2211 25556333 355778899999999999999852 2222222 124789999998
Q ss_pred CCC-HH---HHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhc
Q 008560 453 GKA-VE---EKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLL 493 (561)
Q Consensus 453 ~~~-~~---v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL 493 (561)
..+ .+ +|-+..+.+..+. ..-+++.|... ...+++++
T Consensus 527 n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~---a~eliqll 567 (1075)
T KOG2171|consen 527 NADDKDLRELRGKTMECLSLIA-RAVGKEKFLPL---AEELIQLL 567 (1075)
T ss_pred CCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHh---HHHHHHHH
Confidence 543 33 3444445544443 33344555332 33344544
No 56
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00015 Score=70.23 Aligned_cols=295 Identities=18% Similarity=0.232 Sum_probs=190.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAV-AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
...+++..+++.++..|..|+..+..+... ..+.... +.-.++.+..++....+ -+.|+.+|.|++.+++.++.+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 345788889999999999999999888766 2222222 34678889999988776 678999999999998888877
Q ss_pred HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHH-Hh-c----CCHHHH-HHHHhcCCh--HHHHHHHHHH
Q 008560 230 IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAI-GS-R----GGISSL-LEICQAGTP--GSQAFAAGVL 300 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i-~~-~----g~i~~L-v~ll~~~~~--~~~~~A~~aL 300 (561)
.+. .+..+++.+-+.....-...|.+|.||+..++....+ .. . .++..| ...++.+.. ..-..-+-++
T Consensus 80 l~~---~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 80 LQD---LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHH---HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 665 5777777777764555667889999999987543322 22 1 234444 444544322 2235667788
Q ss_pred HHhhCCchhhHHHHhhhhHHH--HHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHH
Q 008560 301 RNLAGFSEIKENFIEENAVMV--LLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 301 ~nLs~~~~~r~~i~~~g~v~~--Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e 378 (561)
.|++.....|..+.+...++. +..+-+.++.--+...+++|.|+|+... +...+.. -.+..|-.+|
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~-e~~~lLp~iL---------- 224 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLD-ESINLLPAIL---------- 224 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhc-chHHHHHHHH----------
Confidence 999999999999887764332 2222221222345678899999998765 3443433 2222222222
Q ss_pred HHHHHHHHhhcChhhHHHHHhc--chHHHHHHHhc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhc
Q 008560 379 VAVELLSQLASCLPIAEVLVSD--GFVVRLVNVLN-----CGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKML 451 (561)
Q Consensus 379 ~a~~aL~~L~~~~~~~~~l~~~--~~i~~Lv~lL~-----~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll 451 (561)
.-||+.. .+-+. ..+|.=+++|. ..++.++..-+.+|..||.....|+.+...|+-+.+-.+=
T Consensus 225 ------lPlagpe----e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElh 294 (353)
T KOG2973|consen 225 ------LPLAGPE----ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELH 294 (353)
T ss_pred ------hhcCCcc----ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHh
Confidence 2233211 11111 12333337774 3467999999999999999888999998888766665554
Q ss_pred c-CCCHHHHHHHHHHHHHhhcccc
Q 008560 452 D-GKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 452 ~-~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
. ..++.+++.+-.....|....+
T Consensus 295 k~e~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 295 KWEEDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cCCCcHHHHHHHHHHHHHHHhccc
Confidence 4 3567777766555555554333
No 57
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3.3e-05 Score=81.43 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=200.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHH-h---cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAV-A---QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~---~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~ 224 (561)
...++.|.+.|.+.+...+..|..+|..++.++.+.-..-+ . .-.+|.++.+.++++|.+|..|+.++...-....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 34677888999888777778888888888877654322111 1 2468889999999999999999998876543321
Q ss_pred chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 225 SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
...+..- ++.+..+..+-...++++|.+.|+++..|......+-.=--.+.++..+..-++.+..+.-.|+.....++
T Consensus 207 -qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 -QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred -HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 1222221 12667777776777999999999999999776433322112456777777777778888888999999999
Q ss_pred CCchhhHHHHh--hhhHHHHHHHhhcCCH---------------------------------------------------
Q 008560 305 GFSEIKENFIE--ENAVMVLLGLVASGTA--------------------------------------------------- 331 (561)
Q Consensus 305 ~~~~~r~~i~~--~g~v~~Lv~lL~~~~~--------------------------------------------------- 331 (561)
..+-.+..+.. ...+|.|+.-+...+.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 88744444432 2567777653221000
Q ss_pred -----HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc---CCCHHHHHHHHHHHHHhhcChhhHHHHHhc--c
Q 008560 332 -----LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS---VSAVKSLEVAVELLSQLASCLPIAEVLVSD--G 401 (561)
Q Consensus 332 -----~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~---~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~--~ 401 (561)
.++..++.+|--| ..++....++.++.+|+. ...-.++|.++-+|+.++. .+.+-+..+ .
T Consensus 365 ~~~dWNLRkCSAAaLDVL--------anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~Lpe 434 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVL--------ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPE 434 (885)
T ss_pred ccccccHhhccHHHHHHH--------HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHH
Confidence 1122222222222 223344556666666544 1223799999999999885 122333333 3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI---NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
.+|.++.+|.+..+-++.-.+++|.+.+. +++..+.+. ..+..|+..+-+++..||++|+.++..+-..
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999986 223222221 1234445555578999999999998777543
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.28 E-value=0.00036 Score=72.89 Aligned_cols=216 Identities=13% Similarity=0.022 Sum_probs=155.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHH
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAI 272 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 272 (561)
++..|+..|.+.++.++..++.+|..+. ... +.+.|+.+|++.++.+|..+..++...
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~--a~~~L~~~L~~~~p~vR~aal~al~~r---------- 144 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQ--AEPWLEPLLAASEPPGRAIGLAALGAH---------- 144 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chH--HHHHHHHHhcCCChHHHHHHHHHHHhh----------
Confidence 3899999999999889999999997543 345 889999999999999998887666552
Q ss_pred HhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH
Q 008560 273 GSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK 352 (561)
Q Consensus 273 ~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r 352 (561)
.....+.|..++++.++.++..|+++|..+.. ...++.|...+.+.++.++..|+..+..+-. +
T Consensus 145 -~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~--- 208 (410)
T TIGR02270 145 -RHDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R--- 208 (410)
T ss_pred -ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---
Confidence 12346788899999999999999999987753 3567778888999999999999999977643 2
Q ss_pred HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH
Q 008560 353 LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINS 432 (561)
Q Consensus 353 ~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~ 432 (561)
.+++.+..+...... .....+..++.. ... ...++.|..+++... ++..++.++..+-
T Consensus 209 ------~A~~~l~~~~~~~g~-~~~~~l~~~lal-~~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg--- 266 (410)
T TIGR02270 209 ------LAWGVCRRFQVLEGG-PHRQRLLVLLAV-AGG---------PDAQAWLRELLQAAA--TRREALRAVGLVG--- 266 (410)
T ss_pred ------hHHHHHHHHHhccCc-cHHHHHHHHHHh-CCc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcC---
Confidence 234455553322221 122222223322 221 246788888887643 8888888888665
Q ss_pred HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchh
Q 008560 433 KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRK 477 (561)
Q Consensus 433 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~ 477 (561)
....++.|+..+.+. .++..|.+++..++.-.-...
T Consensus 267 -------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~l~~~ 302 (410)
T TIGR02270 267 -------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMDVALE 302 (410)
T ss_pred -------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCCcchh
Confidence 356789999988643 399999999999986544433
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.28 E-value=5.1e-05 Score=76.92 Aligned_cols=254 Identities=18% Similarity=0.173 Sum_probs=180.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHH--HHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh-cCCHHHHHHHHHHHHHhc
Q 008560 269 ARAIGSRGGISSLLEICQAGTPGS--QAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA-SGTALAQENVFGCLCNLV 345 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~~~~~~--~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~ 345 (561)
+..|...|++..|++++...+... +..|.+.|-.+. ..+|+..++..| ...++.+-+ .+..+.+...+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456777899999999999876554 677777776653 457888888776 444444443 345588899999999999
Q ss_pred CCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 008560 346 SDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAAR 423 (561)
Q Consensus 346 ~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~ 423 (561)
.+++..+..++..|+++.++--.+..+ +.+..+|.-+|+|++- +.++...|++...-++|.-+-.+.+.-.+..|+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 999999999999999998887666644 6899999999999984 7788889999888888888877778888999999
Q ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhc--CCCHHHHHHhccCCccchh
Q 008560 424 AVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKD--ERGIVTVVQLLDPLIQNLD 501 (561)
Q Consensus 424 aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~~ 501 (561)
+.+-|+.+.|.-..+.+.|.+...--++.+-++.- .|..+ ....+. ..-+..|+-+|++.. ..
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~--FARD~-----------hd~aQG~~~d~LqRLvPlLdS~R-~E- 394 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR--FARDA-----------HDYAQGRGPDDLQRLVPLLDSNR-LE- 394 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch--hhhhh-----------hhhhccCChHHHHHhhhhhhcch-hh-
Confidence 99999999999888888887554444444333211 11100 011111 123667888888532 12
Q ss_pred hHHHHHHHHHhc----CCchHH-HHHHHcCchHHHHHhhccCccc
Q 008560 502 KKYPVAILAALV----HCRKCR-KQMVAAGACLHLRKLVEMDIEG 541 (561)
Q Consensus 502 k~~a~~~L~~La----~~~~~r-~~i~~~g~i~~L~~Ll~~~~~~ 541 (561)
..++++..-.+ .+..++ +...+-|++..|.++..+.+.-
T Consensus 395 -Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~v 438 (832)
T KOG3678|consen 395 -AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEV 438 (832)
T ss_pred -hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHH
Confidence 22555543222 333343 4567789999999998876654
No 60
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00057 Score=75.51 Aligned_cols=302 Identities=17% Similarity=0.141 Sum_probs=207.7
Q ss_pred HHHHHHHHHhhc-cCchhhHHHHhcCChHHHHHhhcCC-----------C--HHHHHHHHHHHHHHhcCCcchHHHHH-h
Q 008560 168 NSAMDSLLGLLQ-EDDKNVVIAVAQGVVPVLVKLMDSS-----------S--LEMKEKTVASIARVSMVDSSKHVLIA-E 232 (561)
Q Consensus 168 ~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~-----------~--~~~~e~a~~~L~~La~~~~~~~~i~~-~ 232 (561)
..|+..|.+..- .+.-|...+...||++.|..+++.. + ..+..+...++...+..+++|..+.+ .
T Consensus 1402 L~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmP 1481 (2235)
T KOG1789|consen 1402 LSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMP 1481 (2235)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445666666543 3456777888899999999987531 2 34556777888888889999999988 6
Q ss_pred chhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCCh--------------------H
Q 008560 233 GLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTP--------------------G 291 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~--------------------~ 291 (561)
. .|.-|+++++-+ -+.+...++.++..++.+..-+..+.+.|++=.|+.++-+.+. .
T Consensus 1482 S--iI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNs 1559 (2235)
T KOG1789|consen 1482 S--IIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANS 1559 (2235)
T ss_pred H--HHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHH
Confidence 6 889999999876 4666777888888888888888888888887777776632110 0
Q ss_pred HHHHHHHHHHHhhCCc-------hh---hHH----------------------------------HHhhhh---------
Q 008560 292 SQAFAAGVLRNLAGFS-------EI---KEN----------------------------------FIEENA--------- 318 (561)
Q Consensus 292 ~~~~A~~aL~nLs~~~-------~~---r~~----------------------------------i~~~g~--------- 318 (561)
....++.+|..|.... +| +.. |.+.+-
T Consensus 1560 lA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve 1639 (2235)
T KOG1789|consen 1560 LARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVE 1639 (2235)
T ss_pred HHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHH
Confidence 0122333333331100 00 000 000000
Q ss_pred -----------------------------------------------------HHHHHHHhhc-----------------
Q 008560 319 -----------------------------------------------------VMVLLGLVAS----------------- 328 (561)
Q Consensus 319 -----------------------------------------------------v~~Lv~lL~~----------------- 328 (561)
-..|++.+.+
T Consensus 1640 ~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d 1719 (2235)
T KOG1789|consen 1640 RQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDD 1719 (2235)
T ss_pred HHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccc
Confidence 0111111110
Q ss_pred -----------------CCHHHHHHHHHHHHHhcCCChHHHHHHHH----hCcHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 008560 329 -----------------GTALAQENVFGCLCNLVSDDESLKLLIVR----EGGIGSLKSYWDSVSAVKSLEVAVELLSQL 387 (561)
Q Consensus 329 -----------------~~~~~~~~a~~~L~~L~~~~~~~r~~~~~----~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L 387 (561)
+++.-.+-++.+|.|+...+++.-..+.. -|-.+.+..++....++.++..|+.++..+
T Consensus 1720 ~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~ 1799 (2235)
T KOG1789|consen 1720 LIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA 1799 (2235)
T ss_pred hhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 00012344667777777766644332222 255677777777766678999999999999
Q ss_pred hcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHH
Q 008560 388 ASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKAL 466 (561)
Q Consensus 388 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL 466 (561)
..+.++...+.+.+.+..|+.+|.+ -+..++.+..+|+.|+++++..++..+.|++..+..++- +.+++.|..|+++|
T Consensus 1800 Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLl 1878 (2235)
T KOG1789|consen 1800 TANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELL 1878 (2235)
T ss_pred hcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHH
Confidence 9999999999999999999999976 467899999999999999999999999999888887776 67888999999999
Q ss_pred HHhhcc
Q 008560 467 STLMLY 472 (561)
Q Consensus 467 ~~L~~~ 472 (561)
..|...
T Consensus 1879 aKl~Ad 1884 (2235)
T KOG1789|consen 1879 AKLQAD 1884 (2235)
T ss_pred HHhhhc
Confidence 999743
No 61
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00013 Score=77.12 Aligned_cols=311 Identities=14% Similarity=0.082 Sum_probs=196.2
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch--HHHHHhc-hhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK--HVLIAEG-LLLLNHLIRVLESGSGFAKERACVALQALSFSKE 267 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~--~~i~~~g-~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 267 (561)
..++|.|..+|.+++...+|-|..+|..+..+.... ......- .-.+|.++++.++.+++.|..|..++-.......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 357899999999999889999999999998764211 1111111 0168999999999999999999999877655422
Q ss_pred hHHHHHh-cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 268 NARAIGS-RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 268 ~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
+..+.. ...++.|..+-.+.++.+++..+.+|..|-....-|-.=--.++|.-+++..++.++++-..|++....++.
T Consensus 207 -qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 -QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred -HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 222222 335777777778889999999999999887554322211124677777888888888999999999999988
Q ss_pred CChHHHHHHHH--hCcHHHHHHhhhcC-CC--------------------------------------------------
Q 008560 347 DDESLKLLIVR--EGGIGSLKSYWDSV-SA-------------------------------------------------- 373 (561)
Q Consensus 347 ~~~~~r~~~~~--~g~i~~Lv~lL~~~-~~-------------------------------------------------- 373 (561)
.. -.+..+.. ...+|.|+.-+.-+ .+
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 65 23333322 13455554332110 00
Q ss_pred ----HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhC--CChHH
Q 008560 374 ----VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGEC--GCIGP 446 (561)
Q Consensus 374 ----~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~--g~i~~ 446 (561)
-..|.-.+.+|.-|+. ++ +++. .-.+|.|-+.|.+....++|.++-+|..++. .+-+-|... ..+|.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~---~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFG---DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPF 438 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhH---HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHH
Confidence 0122223333333332 11 1111 1234555556667778999999999999984 222222222 24899
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhccc--cchhhHhhcCCCHHHHHH-hccCCccchhhHHHHHHHHHhc
Q 008560 447 LIKMLDGKAVEEKESAAKALSTLMLYA--GNRKILRKDERGIVTVVQ-LLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 447 Lv~ll~~~~~~v~~~A~~aL~~L~~~~--~~~~~~~~~~~~i~~Lv~-lL~~~~~~~~k~~a~~~L~~La 513 (561)
|+.+|.++.+-||...++.|...+... ..+.++.. ..+..|+. +||+. --.++.|+++++.+-
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~N--K~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSN--KKVQEAACSAFATLE 504 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 999999999999999999998887422 22322212 13444444 44552 234566888887764
No 62
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.22 E-value=0.00054 Score=70.71 Aligned_cols=294 Identities=18% Similarity=0.165 Sum_probs=205.8
Q ss_pred HHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC--C
Q 008560 171 MDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG--S 248 (561)
Q Consensus 171 l~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~--~ 248 (561)
+..|..+.+.+++-+..+.-.-..+.+..++-+++.+++-.+.+++..+..+.+.-..+.+.+ .---++.-|... +
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~--id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLH--IDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcC--CchhhHhhhcccCCC
Confidence 345666666666555554444455555544444449999999999999999988888888887 666667777654 4
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc
Q 008560 249 GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVAS 328 (561)
Q Consensus 249 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~ 328 (561)
..-|++|.+.+..+....++...+ ..|.+..++.+..+.++..+..|..+|..++..+ -+.+++.|++..|++.+.+
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALID 158 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHh
Confidence 455889999998886654333222 4578999999999999999999999999998653 2345689999999999988
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC------CCH--HHHHHHHHHHHHhhcChhhHHHHHhc
Q 008560 329 GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV------SAV--KSLEVAVELLSQLASCLPIAEVLVSD 400 (561)
Q Consensus 329 ~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~------~~~--~~~e~a~~aL~~L~~~~~~~~~l~~~ 400 (561)
+..+..+..+.++..+-.... .|+.+...--++.++.-+.+. .+. +....+..++..+-++-.|.-.+...
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 777788888888888876543 455444433466665554332 111 24456666666666655554444443
Q ss_pred --chHHHHHHHhcCCCHHHHHHHHHHHHHHcC--C----------------HHH--------------------------
Q 008560 401 --GFVVRLVNVLNCGVLSVRIAAARAVSMLGI--N----------------SKA-------------------------- 434 (561)
Q Consensus 401 --~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~----------------~~~-------------------------- 434 (561)
.++..|+..|...++++++.....+..+-. . ...
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 468889999988888888888888877742 0 000
Q ss_pred ---------HHHHHhCCChHHHHHhccCC-CHHHHHHHHHHHHHhh
Q 008560 435 ---------RKEMGECGCIGPLIKMLDGK-AVEEKESAAKALSTLM 470 (561)
Q Consensus 435 ---------~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~aL~~L~ 470 (561)
.-.+.++|.++.|+.+..+. ++.+..+|.-+|..+.
T Consensus 318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11346789999999999865 7778888888877664
No 63
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=1.4e-05 Score=67.85 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=114.4
Q ss_pred hHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH
Q 008560 236 LLNHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI 314 (561)
Q Consensus 236 ~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~ 314 (561)
-+..|+.-.+. .+.+.++....-|.|.+.++-|-..+.+.++++..+.-+...+...++.+.+.|+|+|.+..+...|.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 56666665555 48899999999999999999888888888999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHh
Q 008560 315 EENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSY 367 (561)
Q Consensus 315 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~l 367 (561)
+++++|..+..+++..+.+...++.+++.|+.++...|..+....+++.+.+.
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999887777766665555444443
No 64
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00037 Score=68.01 Aligned_cols=268 Identities=17% Similarity=0.147 Sum_probs=189.9
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCc-hH----HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhh
Q 008560 244 LESGSGFAKERACVALQALSFSKE-NA----RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENA 318 (561)
Q Consensus 244 L~~~~~~~~~~aa~~L~~Ls~~~~-~~----~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~ 318 (561)
|...+..++.-++..+..+.++.+ |. ..+++.|..+.++..+...+.++.++|...+..++..+..-..+.+...
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 444577888889988888877644 22 2344677888888988888999999999999999998877766666655
Q ss_pred HHH--HHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 008560 319 VMV--LLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEV 396 (561)
Q Consensus 319 v~~--Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~ 396 (561)
... +.++-...+.-++......+..+.+-++..-...-+.|.+..|..-+....+.-++..++.....|+....+++.
T Consensus 171 lDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgref 250 (524)
T KOG4413|consen 171 LDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREF 250 (524)
T ss_pred CChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhh
Confidence 533 344444455567788888899998887766667778899999999998877778899999999999988889999
Q ss_pred HHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCHH----HHHHHHhC--CChHHHHHhccCCCHHHHHHHHHHHHH
Q 008560 397 LVSDGFVVRLVNVLNCG--VLSVRIAAARAVSMLGINSK----ARKEMGEC--GCIGPLIKMLDGKAVEEKESAAKALST 468 (561)
Q Consensus 397 l~~~~~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~~~----~~~~i~~~--g~i~~Lv~ll~~~~~~v~~~A~~aL~~ 468 (561)
+.+.|.|+.+..++... ++--+-.+.....++-.+.. .-+.+.+. -++..-.+++...++..++.|..++..
T Consensus 251 laQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGi 330 (524)
T KOG4413|consen 251 LAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGI 330 (524)
T ss_pred cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHh
Confidence 99999999999988543 23223335555555543211 11122221 236666778888899999999999999
Q ss_pred hhccccchhhHhhcCCCHHHHHHhcc---CCccchhhHHHHHHHHHhc
Q 008560 469 LMLYAGNRKILRKDERGIVTVVQLLD---PLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 469 L~~~~~~~~~~~~~~~~i~~Lv~lL~---~~~~~~~k~~a~~~L~~La 513 (561)
|.++......+.+- |-|..-+++. ..+....+..++.+|.+++
T Consensus 331 lGSnteGadlllkT--gppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 331 LGSNTEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred ccCCcchhHHHhcc--CChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 99888777666443 4444333332 2222233455788888876
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.16 E-value=0.00057 Score=71.39 Aligned_cols=246 Identities=13% Similarity=0.031 Sum_probs=166.5
Q ss_pred hcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCch
Q 008560 190 AQGVVPVLVKLMD-SSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKEN 268 (561)
Q Consensus 190 ~~g~v~~Lv~lL~-~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 268 (561)
...+++.|+..|. ..++++...++.++. ..+ ... ++..|+..|.+.+..++..++.+|..+
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~--------~~~--~~~~L~~~L~d~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALALL--AQE--------DAL--DLRSVLAVLQAGPEGLCAGIQAALGWL------ 113 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHHh--ccC--------ChH--HHHHHHHHhcCCCHHHHHHHHHHHhcC------
Confidence 3567888888884 455666655444442 111 122 589999999999999999999998854
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 008560 269 ARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
...+..+.|+.++.+.++..+..++.++... .....+.+..+|++.+..++..|+.+|..+-..
T Consensus 114 ----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 114 ----GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ----CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 2335678899999999999998888777652 123457888999999999999999999987654
Q ss_pred hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 008560 349 ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSML 428 (561)
Q Consensus 349 ~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 428 (561)
..++.|...+.+.+ +.++..|+.++..+-. + ..+..+..+...........+. ++..+
T Consensus 178 ----------~a~~~L~~al~d~~-~~VR~aA~~al~~lG~-~---------~A~~~l~~~~~~~g~~~~~~l~-~~lal 235 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSD-PEVRFAALEAGLLAGS-R---------LAWGVCRRFQVLEGGPHRQRLL-VLLAV 235 (410)
T ss_pred ----------cchHHHHHHHcCCC-HHHHHHHHHHHHHcCC-H---------hHHHHHHHHHhccCccHHHHHH-HHHHh
Confidence 34566776666544 5899999999976643 2 2345555533332222233332 23233
Q ss_pred cCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHH
Q 008560 429 GINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAI 508 (561)
Q Consensus 429 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~ 508 (561)
..++ ..++.|..++++.. ++..++.+|..+ .+...++.|++.++... .+..|-.+
T Consensus 236 ~~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~l-----------g~p~av~~L~~~l~d~~---~aR~A~eA 290 (410)
T TIGR02270 236 AGGP---------DAQAWLRELLQAAA--TRREALRAVGLV-----------GDVEAAPWCLEAMREPP---WARLAGEA 290 (410)
T ss_pred CCch---------hHHHHHHHHhcChh--hHHHHHHHHHHc-----------CCcchHHHHHHHhcCcH---HHHHHHHH
Confidence 2222 45788888887543 888888888655 33457888999997632 56778888
Q ss_pred HHHhcCCc
Q 008560 509 LAALVHCR 516 (561)
Q Consensus 509 L~~La~~~ 516 (561)
+..+++-+
T Consensus 291 ~~~ItG~~ 298 (410)
T TIGR02270 291 FSLITGMD 298 (410)
T ss_pred HHHhhCCC
Confidence 88877533
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=4.1e-05 Score=65.14 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=112.6
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHH
Q 008560 192 GVVPVLVKLM-DSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 192 g~v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
+.+..||.-. ...+.+.+|+...-|.|.+.++.+-..+.+.. +++.++..|...+...++.+...|+|++.+..|..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~--vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLD--VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhh--HHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3445555533 34568999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHh
Q 008560 271 AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLV 326 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL 326 (561)
.|.+.++++..+..+.+........|+.++..|+..+ .-|..+...-+|..+-..-
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 9999999999999998888888899999999999877 5666666655555554443
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00017 Score=77.58 Aligned_cols=217 Identities=16% Similarity=0.110 Sum_probs=172.8
Q ss_pred hhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhhcChh--
Q 008560 317 NAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLASCLP-- 392 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~~~~~-- 392 (561)
..|+.|++-+.+.+- +=+..|+..|-.++.. +|..+ -.-|+++|+..|+.+ .+++....++..+.++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 356777777765443 5678888888887653 45444 445789999999874 567899999999999986442
Q ss_pred ---------------hHHHHHhc-chHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhC-CChHHHHHhccC
Q 008560 393 ---------------IAEVLVSD-GFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGEC-GCIGPLIKMLDG 453 (561)
Q Consensus 393 ---------------~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~-g~i~~Lv~ll~~ 453 (561)
..+.++.. +.|..|+..+...+..++..++..+.++.. ..+.++.+... -+|..|+.++.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 13344444 889999999999999999999999999976 57899888776 689999999998
Q ss_pred CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCcc---chhhHHHHHHHHHhc-CCchHHHHHHHcCchH
Q 008560 454 KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQ---NLDKKYPVAILAALV-HCRKCRKQMVAAGACL 529 (561)
Q Consensus 454 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~---~~~k~~a~~~L~~La-~~~~~r~~i~~~g~i~ 529 (561)
.-..+|..|.-.|..|....++-..++.=++.+..|+.++..+++ ...-.-++..|.||- .+.+++.-..+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 888899999999999998888877777777899999999976642 234455888888887 7888999999999999
Q ss_pred HHHHhhcc
Q 008560 530 HLRKLVEM 537 (561)
Q Consensus 530 ~L~~Ll~~ 537 (561)
.|.+|+..
T Consensus 258 rL~klL~~ 265 (970)
T KOG0946|consen 258 RLLKLLSV 265 (970)
T ss_pred HHHhhcCc
Confidence 99988843
No 68
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00022 Score=74.11 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=206.9
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--c
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK--E 267 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~ 267 (561)
-++.+++++..+...+..++..|+..|.|++.-........-+. ....+.++....+..++ .++..|-.|..+- +
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~--iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNE--IFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHH--HHHHHHHHhcCCccccc-cHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999986543333333344 66667777666555544 4566666554431 1
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHH----HH
Q 008560 268 NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCL----CN 343 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L----~~ 343 (561)
....+.-.+.||.|-+.+..-++..+..-..-|..|=..++....=.-....+-|++.|.+.+.+++..+=.+| .+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 12133334456666666666788888888888888877665433222345778888999998888886554444 44
Q ss_pred hcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCH-HHHHHHH
Q 008560 344 LVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVL-SVRIAAA 422 (561)
Q Consensus 344 L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~~~~A~ 422 (561)
+.+..... --...++.++.-+.++. +..+..|+.-|..+..-+...-...-.|++..++..+.+... .+++.+.
T Consensus 239 I~s~P~s~----d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 239 IRSSPSSM----DYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HhcCcccc----CcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 44332211 11234566666666544 588999988888877632221111123566666666655444 3555543
Q ss_pred H---HHHHHcCCHHHHHHHHhCC-ChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCcc
Q 008560 423 R---AVSMLGINSKARKEMGECG-CIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQ 498 (561)
Q Consensus 423 ~---aL~~L~~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 498 (561)
. -|..++.++...+. .+.| .+..|.+.+.++..+.|..+..-+..|-...++.-.. ....-...|+.-|.....
T Consensus 314 ~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchh
Confidence 3 35555555444434 3443 4778888888888889998888887777666654333 333455667777744332
Q ss_pred chhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCc
Q 008560 499 NLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDI 539 (561)
Q Consensus 499 ~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~ 539 (561)
..-..++..+.+++.+++.+ +.++.+..|+++--
T Consensus 392 -~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 392 -EVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFK 425 (675)
T ss_pred -HHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHh
Confidence 22345899999998666654 44666666666543
No 69
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.05 E-value=3e-07 Score=69.48 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=53.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccccccccc
Q 008560 57 ASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQD 136 (561)
Q Consensus 57 ~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~ 136 (561)
|.|||+.++|.+ ||....|++| +++.|.+|+.. +.+|| ++.+++. ..+++||..|++
T Consensus 2 ~~Cpi~~~~~~~----------Pv~~~~G~v~---------~~~~i~~~~~~-~~~cP--~~~~~~~-~~~l~~~~~l~~ 58 (63)
T smart00504 2 FLCPISLEVMKD----------PVILPSGQTY---------ERRAIEKWLLS-HGTDP--VTGQPLT-HEDLIPNLALKS 58 (63)
T ss_pred cCCcCCCCcCCC----------CEECCCCCEE---------eHHHHHHHHHH-CCCCC--CCcCCCC-hhhceeCHHHHH
Confidence 689999999997 5777779999 99999999987 78999 9988886 568999999998
Q ss_pred cccc
Q 008560 137 GVVS 140 (561)
Q Consensus 137 li~~ 140 (561)
.|+.
T Consensus 59 ~i~~ 62 (63)
T smart00504 59 AIQE 62 (63)
T ss_pred HHHh
Confidence 7753
No 70
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.98 E-value=0.0023 Score=65.61 Aligned_cols=247 Identities=22% Similarity=0.217 Sum_probs=159.1
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
..+..+++.+.+.+...|..|...+..+ ...-+++.+..++.+.++.++..|+.+|..+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 4567778888888888888888764332 23567999999999999999999999887664
Q ss_pred HHhchhhHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHH------------HHHH
Q 008560 230 IAEGLLLLNHLIRVLE-SGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGS------------QAFA 296 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~------------~~~A 296 (561)
.+. .++.++..|+ +.+..+|..++++|..+-.. .++.+|+..+.+..... +..+
T Consensus 103 -~~~--a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 -DPE--AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -Chh--HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 344 8999999999 58999999999999877432 34788888887765322 2333
Q ss_pred HHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHH
Q 008560 297 AGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKS 376 (561)
Q Consensus 297 ~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~ 376 (561)
..+|..+ -+...++.+...+.+....++..++.+|..+...+ ....+.+...+.+.+ ..+
T Consensus 170 ~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~-~~v 229 (335)
T COG1413 170 AEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES-LEV 229 (335)
T ss_pred HHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC-HHH
Confidence 3333322 23446777888888887788888888888877654 223445555555544 367
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCH
Q 008560 377 LEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAV 456 (561)
Q Consensus 377 ~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 456 (561)
+..++.+|..+-.. ..+..++..+...+..++..+...+..+- -......+...+.....
T Consensus 230 r~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~ 289 (335)
T COG1413 230 RKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLIDEAN 289 (335)
T ss_pred HHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhhcchh
Confidence 77777766655331 23466666666666655555444443110 01223444444444455
Q ss_pred HHHHHHHHHHHHh
Q 008560 457 EEKESAAKALSTL 469 (561)
Q Consensus 457 ~v~~~A~~aL~~L 469 (561)
.++..+..++...
T Consensus 290 ~~~~~~~~~l~~~ 302 (335)
T COG1413 290 AVRLEAALALGQI 302 (335)
T ss_pred hHHHHHHHHHHhh
Confidence 5555555444433
No 71
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.0041 Score=66.03 Aligned_cols=319 Identities=15% Similarity=0.053 Sum_probs=194.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHHhcCCcchHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEK-TVASIARVSMVDSSKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~-a~~~L~~La~~~~~~~~i 229 (561)
..+.+.+.+.+.+...+..+...+..+..+.. -..+.+.+++..|...........+.+ +.-+.-....+- ...
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCC
Confidence 44556677777777888889988888876543 233456788888988887765433332 222221111110 122
Q ss_pred HHhchhhHHHHHHHHh---cCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 230 IAEGLLLLNHLIRVLE---SGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~---~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
.+.. .++.+-.+|. +...++|..|..+...+-.. +...- .-.++.++.-+....=..+..++..|..++.
T Consensus 210 ~EPy--iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 210 FEPY--IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCch--HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2344 5555555554 44677787777776655332 11000 0124444443333333567888889998887
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC--hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD--ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL 383 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a 383 (561)
.....-......++|.+.+.|-+...+++..+..+|.+++..- +.+. ..++.|+..+.+++ .-...++..
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~--~~~~e~~~~ 355 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPS--CYTPECLDS 355 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcc--cchHHHHHh
Confidence 7777777778899999999999999999999999999998732 2211 23555666665533 123344444
Q ss_pred HHHhhc----ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHhccCCCHH
Q 008560 384 LSQLAS----CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGEC--GCIGPLIKMLDGKAVE 457 (561)
Q Consensus 384 L~~L~~----~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~ 457 (561)
|..=.- .+... .-.+|.|-+-+...+...+..++.+++|+|.-.+..+.+... ..+|-|-..+.+..|+
T Consensus 356 L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 356 LGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPE 430 (569)
T ss_pred hcceeeeeeecchhH-----HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChh
Confidence 433221 11111 122455555666778888899999999999732222222111 1355555555556799
Q ss_pred HHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCc
Q 008560 458 EKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLI 497 (561)
Q Consensus 458 v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 497 (561)
+|.-++.+|..+....+++.. .+.++.+...+..+.
T Consensus 431 vR~vaarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~k 466 (569)
T KOG1242|consen 431 VRAVAARALGALLERLGEVSF----DDLIPELSETLTSEK 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhcc----cccccHHHHhhccch
Confidence 999999999888876665543 467888888885543
No 72
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0073 Score=61.47 Aligned_cols=258 Identities=14% Similarity=0.100 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC------chHH----HHHhcCCHHH
Q 008560 211 KTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK------ENAR----AIGSRGGISS 280 (561)
Q Consensus 211 ~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~------~~~~----~i~~~g~i~~ 280 (561)
..+.-+..+|.-++--..+++.+ +++.|+.+|.+.+.++.......|..|+..+ +..+ ++++.++++.
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln--~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELN--AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhc--cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34445667788888888899999 9999999999999999999999999998642 2232 3444566777
Q ss_pred HHHHHhcCC------hHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCC--HHHHHHHHHHHHHhcCCChHH
Q 008560 281 LLEICQAGT------PGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGT--ALAQENVFGCLCNLVSDDESL 351 (561)
Q Consensus 281 Lv~ll~~~~------~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~ 351 (561)
|+.-+..-+ ..+.......+-|+.... +.+..+++.|.+.-|+.-+.... ..-+.+|..+|.-+..++..+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 776554322 234577888888988765 88888899999999888665432 256788999999888887778
Q ss_pred HHHHHHhCcHHHHHHhhhc-----C---CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 008560 352 KLLIVREGGIGSLKSYWDS-----V---SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAAR 423 (561)
Q Consensus 352 r~~~~~~g~i~~Lv~lL~~-----~---~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~ 423 (561)
+.......|+..+++-+.. + +..+.-+.-...|+.+-..+++++.+....+++-..-+++. ....+..|.+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 8888889999999987742 1 12345556666666666799999999988777665555655 4455777888
Q ss_pred HHHHHcCC---HHHHHHHHhCCChHHHHHhcc-CC---------CHHHHHHHHHHHHHhhc
Q 008560 424 AVSMLGIN---SKARKEMGECGCIGPLIKMLD-GK---------AVEEKESAAKALSTLML 471 (561)
Q Consensus 424 aL~~L~~~---~~~~~~i~~~g~i~~Lv~ll~-~~---------~~~v~~~A~~aL~~L~~ 471 (561)
+|-....+ ..++..+++.++......+.. .+ ....-+..+..|+.|..
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 88888774 367777888777655544432 11 23344555666666653
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=2e-05 Score=53.74 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=37.7
Q ss_pred CchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008560 181 DDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVS 220 (561)
Q Consensus 181 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La 220 (561)
+++++..+++.|+||.|+.+|++.+++++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999987
No 74
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.004 Score=63.34 Aligned_cols=236 Identities=19% Similarity=0.204 Sum_probs=170.6
Q ss_pred HHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC---------hHHHHHHHHhCcHHHHHHh
Q 008560 297 AGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD---------ESLKLLIVREGGIGSLKSY 367 (561)
Q Consensus 297 ~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~---------~~~r~~~~~~g~i~~Lv~l 367 (561)
..-+.-++..++.-..+++.++|+.|+.+|.+.+.++....+..|..++..| +..-.++++.++++.|++-
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 3345556777888888999999999999999999999999999999998643 2455677888899999988
Q ss_pred hhcC-----CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHHcCC-HHHHHHH
Q 008560 368 WDSV-----SAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCG--VLSVRIAAARAVSMLGIN-SKARKEM 438 (561)
Q Consensus 368 L~~~-----~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~-~~~~~~i 438 (561)
+..- ........++..+.|+.. .++....+++.|.+.+|+.-+... -..-...|..+|.-+..+ .+++...
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~ 264 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLL 264 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhh
Confidence 8651 223456788999999997 677788888889999998866543 235677888888888774 5688899
Q ss_pred HhCCChHHHHHhcc----CC-----CHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHH
Q 008560 439 GECGCIGPLIKMLD----GK-----AVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAIL 509 (561)
Q Consensus 439 ~~~g~i~~Lv~ll~----~~-----~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L 509 (561)
..-.++..|++-+. .+ ..+.-+.--..||.+...+.|++.|..+ .|+.-..-++... ......++.+|
T Consensus 265 ~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm~Lmlr~K--k~sr~SalkvL 341 (536)
T KOG2734|consen 265 GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLMNLMLREK--KVSRGSALKVL 341 (536)
T ss_pred cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHHHHHHHHH--HHhhhhHHHHH
Confidence 99889988887764 11 2234455567777777899999999764 6665544444431 12233367777
Q ss_pred HHhc-CCc--hHHHHHHHcCchHHHHHhh
Q 008560 510 AALV-HCR--KCRKQMVAAGACLHLRKLV 535 (561)
Q Consensus 510 ~~La-~~~--~~r~~i~~~g~i~~L~~Ll 535 (561)
-... +.+ ....+.++.++...+..+.
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 6655 222 4566777777777666544
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.82 E-value=0.0045 Score=63.98 Aligned_cols=231 Identities=16% Similarity=0.060 Sum_probs=164.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCCchhhHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAG--TPGSQAFAAGVLRNLAGFSEIKENF 313 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~~~~r~~i 313 (561)
..+.+..++-+.+.++|..+-+++..+..+.+.-..+.+.+.--.++.-+... ....++.|.+.++.+....+....
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 44445445555569999999999999999888777777765444444444432 445678999999888765433222
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhh
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPI 393 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~ 393 (561)
.-.|.+..++.+.++.++..+..|+++|++++..++ +.+++.||+..|++.+-+++. ...+..+.++..+-.+|..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF-SISESLLDTLLYLLDSPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCcch
Confidence 366899999999999999999999999999999876 467899999999999987554 5889999999999999999
Q ss_pred HHHHHhcchHHHHHHHhcC-------CCH--HHHHHHHHHHHHHcCC-HHHHHH-HHhCCChHHHHHhccCCCHHHHHHH
Q 008560 394 AEVLVSDGFVVRLVNVLNC-------GVL--SVRIAAARAVSMLGIN-SKARKE-MGECGCIGPLIKMLDGKAVEEKESA 462 (561)
Q Consensus 394 ~~~l~~~~~i~~Lv~lL~~-------~~~--~~~~~A~~aL~~L~~~-~~~~~~-i~~~g~i~~Lv~ll~~~~~~v~~~A 462 (561)
|..+...--++.++.-..+ .+. +--+.+..++..+-.+ +...-. +-+..++..|+..++.+++++|+..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 8877654334444442221 122 2344555666665542 211111 1112468889999998999999999
Q ss_pred HHHHHHhhc
Q 008560 463 AKALSTLML 471 (561)
Q Consensus 463 ~~aL~~L~~ 471 (561)
..++..+..
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 999998874
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=97.78 E-value=0.0011 Score=72.10 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=150.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHhCcHHHHHHhhhcC------CCHHHHHHHHHHHHHhh
Q 008560 318 AVMVLLGLVASGTALAQENVFGCLCNLVSDDE---SLKLLIVREGGIGSLKSYWDSV------SAVKSLEVAVELLSQLA 388 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---~~r~~~~~~g~i~~Lv~lL~~~------~~~~~~e~a~~aL~~L~ 388 (561)
.+...+.+|+..++.-+..++..+.++..+++ ..++.+.+.=|.+-|-++|.++ +....+..++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45667788888887778888888889888765 3355678887889999999873 23467888999999999
Q ss_pred cChhhHHHHHhcchHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 008560 389 SCLPIAEVLVSDGFVVRLVNVLNCGVL-SVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALS 467 (561)
Q Consensus 389 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~ 467 (561)
..|+....---.+-||.|++.+...+. ++...+..+|..++.+++.++.+.+.|+++.|++.+.+ .+...+.|..+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 866653221112569999999987777 99999999999999999999999999999999999986 6667899999999
Q ss_pred HhhccccchhhHhhcCCCHHHHHHhccCC---ccchhhHHHHHHHHHhcCCch------HHHHHHHcCchHHHHHhhccC
Q 008560 468 TLMLYAGNRKILRKDERGIVTVVQLLDPL---IQNLDKKYPVAILAALVHCRK------CRKQMVAAGACLHLRKLVEMD 538 (561)
Q Consensus 468 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~---~~~~~k~~a~~~L~~La~~~~------~r~~i~~~g~i~~L~~Ll~~~ 538 (561)
+++...+ .+........+..++.-+... .....|-..+..|..+-...+ ....-+-......|..++.+.
T Consensus 165 ~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 9886433 111111122333333333211 111223335666665542111 123334444455566666655
Q ss_pred cc
Q 008560 539 IE 540 (561)
Q Consensus 539 ~~ 540 (561)
.+
T Consensus 244 ~~ 245 (543)
T PF05536_consen 244 LT 245 (543)
T ss_pred CC
Confidence 44
No 77
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.75 E-value=6.4e-05 Score=51.23 Aligned_cols=41 Identities=32% Similarity=0.453 Sum_probs=38.4
Q ss_pred CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 431 NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 431 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
++++++.+++.|+++.|+.++.+.++.+++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999863
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.008 Score=65.21 Aligned_cols=173 Identities=16% Similarity=0.200 Sum_probs=123.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHh
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAE 232 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~ 232 (561)
.+|.++|.+.....|.+|++.|..+...+.. -....|.+|+-..+.+.+++.-.---|..-|..+.+-..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL---- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL---- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----
Confidence 5688899988888999999999988776543 135578899999999999988776666666654433222
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhH
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKE 311 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~ 311 (561)
..|..+=+-|+..++.+|..|.++|..+-.. +...=.+-++-+...+.++.+++.|+.|+-.|=+-+ +-+.
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 2677888889999999999999998876332 111001222223445678889999999998886544 4444
Q ss_pred HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 008560 312 NFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
. .+..+=.||.+.++.+.-.|+.+.-.+|-..
T Consensus 180 q-----L~e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 180 Q-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred H-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 3 4455667788888889999999999888653
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.012 Score=64.00 Aligned_cols=361 Identities=12% Similarity=0.101 Sum_probs=166.8
Q ss_pred CchHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHH------------
Q 008560 143 SKREAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKE------------ 210 (561)
Q Consensus 143 ~~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e------------ 210 (561)
.++|-.+...++..+.++..++..|.+|+-+...+....++-... +++.-..+|.+.+..+.-
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 455666777777777788889999999999888888776654332 233333344333333333
Q ss_pred -------------HHHHHHHHHhcCC---cc-h----HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH
Q 008560 211 -------------KTVASIARVSMVD---SS-K----HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 211 -------------~a~~~L~~La~~~---~~-~----~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
.-+.+|.++.... ++ . .-+..-. +-.++++|.+++.+..+.-..+|..++.+.+.-
T Consensus 210 ~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~---iLrlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR---ILRLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH---HHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 3333444443211 10 0 1111111 122334445555555555555555554432211
Q ss_pred HHHHh---cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH-----------hhhhH----HHHHHHhhcCCH
Q 008560 270 RAIGS---RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI-----------EENAV----MVLLGLVASGTA 331 (561)
Q Consensus 270 ~~i~~---~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~-----------~~g~v----~~Lv~lL~~~~~ 331 (561)
.-++. ...|..+..+ ..++..+..|+.+|...-.++++--+.+ +..+| ..+++.|++.+.
T Consensus 287 kN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~ 364 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV 364 (866)
T ss_pred ccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH
Confidence 11111 0011111111 1234455555555555544442211111 11111 234555566666
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHh
Q 008560 332 LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVL 410 (561)
Q Consensus 332 ~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL 410 (561)
.++..|++.+..|...+. .+ ..++.|+.+|... +++.+..+..-+..++. +.... .-.++.+.+.+
T Consensus 365 SIkrralELs~~lvn~~N-v~------~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k-----~W~idtml~Vl 431 (866)
T KOG1062|consen 365 SIKRRALELSYALVNESN-VR------VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDK-----RWHIDTMLKVL 431 (866)
T ss_pred HHHHHHHHHHHHHhcccc-HH------HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHHH
Confidence 666666666665554331 11 2355677777776 45777777777777774 33321 12344555555
Q ss_pred cCCCHHHHHHHHHHHHHHcCC---HHHHHHHHhC-CChHHHHHhccCCCHHHHHHHHHHHHHhh---ccccchhhH--hh
Q 008560 411 NCGVLSVRIAAARAVSMLGIN---SKARKEMGEC-GCIGPLIKMLDGKAVEEKESAAKALSTLM---LYAGNRKIL--RK 481 (561)
Q Consensus 411 ~~~~~~~~~~A~~aL~~L~~~---~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~---~~~~~~~~~--~~ 481 (561)
.....-++..++..+..|-.+ +.+...+... -.+...- ++....+.....|.|++.-=. .+..+.... +.
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vt 510 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT-LLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVT 510 (866)
T ss_pred HhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCC
Confidence 443333344444444444321 1111111000 0000000 111122233444555554221 121111111 12
Q ss_pred cCCCHHHHHHhccCC-ccchhhHHHHHHHHHhc-----CCchHHHHHHHcCc
Q 008560 482 DERGIVTVVQLLDPL-IQNLDKKYPVAILAALV-----HCRKCRKQMVAAGA 527 (561)
Q Consensus 482 ~~~~i~~Lv~lL~~~-~~~~~k~~a~~~L~~La-----~~~~~r~~i~~~g~ 527 (561)
+...+..|-..+.+. .....|.||+.+|+.|+ .++++++.|.+.+.
T Consensus 511 esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~ 562 (866)
T KOG1062|consen 511 ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKS 562 (866)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 234466677777544 23467889999999996 25666666666554
No 80
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0041 Score=67.21 Aligned_cols=302 Identities=17% Similarity=0.152 Sum_probs=181.8
Q ss_pred HHHHhHHHHHH-HhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Cc
Q 008560 147 AVRAESRNLIT-RLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DS 224 (561)
Q Consensus 147 ~~~~~v~~Lv~-~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~ 224 (561)
.+...|+..++ .+++++...|..|+.++.+...+.+..+..-...+++|.++.++.++..-+++.+++.|..++.. .+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 34456777776 78999999999999999999988777776666789999999999988788889999999999865 22
Q ss_pred ch-HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-----ch-HHHHHh---cCCHHHHHHHHhc---CChH
Q 008560 225 SK-HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-----EN-ARAIGS---RGGISSLLEICQA---GTPG 291 (561)
Q Consensus 225 ~~-~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-----~~-~~~i~~---~g~i~~Lv~ll~~---~~~~ 291 (561)
.. ....-.+ .++.++.-|.+ .+.+-.++||++.+|+..- ++ +..... ...|..|++.-.. ....
T Consensus 440 ~~~n~~~l~~--~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 440 AIINQELLQS--KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hcccHhhhhH--HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 21 1222234 55555555533 6778899999999998431 11 111111 0123333333222 2345
Q ss_pred HHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHH---------HhhcCC----HHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008560 292 SQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLG---------LVASGT----ALAQENVFGCLCNLVSDDESLKLLIVR 357 (561)
Q Consensus 292 ~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~---------lL~~~~----~~~~~~a~~~L~~L~~~~~~~r~~~~~ 357 (561)
.+.+|-.+|..+..+. +..-.++. +....... .+...+ .+++..-+.+|..+...-.. +..-+.
T Consensus 517 LR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~ 594 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVS 594 (859)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHH
Confidence 6788888888887654 33333321 22222222 121111 14556666666666542221 122233
Q ss_pred hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhh-HHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHH
Q 008560 358 EGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPI-AEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGINSKAR 435 (561)
Q Consensus 358 ~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~-~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~ 435 (561)
.-.+..+++++.+..+..+.+.|+.++..++.+-.. -..- -..+.|-|..-|+ ..+..+-..|++....||..-+..
T Consensus 595 d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ky-m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 595 DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKY-MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 446778888888865557888888888888752221 1111 1245666666663 345567777888888888632111
Q ss_pred HHHHhCCChHHHHHhccCC
Q 008560 436 KEMGECGCIGPLIKMLDGK 454 (561)
Q Consensus 436 ~~i~~~g~i~~Lv~ll~~~ 454 (561)
-...-.+.+..|++.|.+.
T Consensus 674 i~py~d~~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 674 ILPYCDELMTVLVQCLSSP 692 (859)
T ss_pred hhhHHHHHHHHHHHHccCc
Confidence 1111124477888887743
No 81
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.032 Score=59.99 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=193.3
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhc-CCc
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS--LEMKEKTVASIARVSM-VDS 224 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~e~a~~~L~~La~-~~~ 224 (561)
+...+..+-..|.+.++-...-|+..+.+... -+++..+ ..-|+ ++|-+++ .-++..|+-+|..|-. +++
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 33445555566666666666667766665532 1222222 12233 6665654 4566666666655543 232
Q ss_pred chHHHHHh-chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-Cc-hHHHHHhcCCHHHHHHHHhc-------------C
Q 008560 225 SKHVLIAE-GLLLLNHLIRVLESGSGFAKERACVALQALSFS-KE-NARAIGSRGGISSLLEICQA-------------G 288 (561)
Q Consensus 225 ~~~~i~~~-g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~-~~~~i~~~g~i~~Lv~ll~~-------------~ 288 (561)
++.. + -...++.+|.+.+..+...+...+..|+.. ++ .+-.+.. ++..|-.++.. .
T Consensus 182 ----l~~~~~--W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP 253 (938)
T KOG1077|consen 182 ----LVNPGE--WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVP 253 (938)
T ss_pred ----ccChhh--HHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCC
Confidence 2222 4 678899999888888888888888888764 32 2222211 23333333322 1
Q ss_pred ChHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcCC-----HH---------HHHHHHHHHHHhcCCChHHH
Q 008560 289 TPGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASGT-----AL---------AQENVFGCLCNLVSDDESLK 352 (561)
Q Consensus 289 ~~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~~-----~~---------~~~~a~~~L~~L~~~~~~~r 352 (561)
.|..+...++.|.++-.-+ ..|.+ .+.++=.+|.... .. +...|+.....+=..+
T Consensus 254 ~PWL~vKl~rlLq~~p~~~D~~~r~~-----l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~---- 324 (938)
T KOG1077|consen 254 APWLQVKLLRLLQIYPTPEDPSTRAR-----LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP---- 324 (938)
T ss_pred ChHHHHHHHHHHHhCCCCCCchHHHH-----HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH----
Confidence 2444555666666552222 22332 2333333443221 01 1122222222221111
Q ss_pred HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC
Q 008560 353 LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 353 ~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~ 431 (561)
+.+. ..+..|-.++..... ..+.-++..++.||++....+.+..+ ...++..|+ ..+..+++.|+..|+.+|.
T Consensus 325 ~ll~--~~~~~Lg~fls~rE~-NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD- 398 (938)
T KOG1077|consen 325 ELLS--RAVNQLGQFLSHRET-NIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD- 398 (938)
T ss_pred HHHH--HHHHHHHHHhhcccc-cchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-
Confidence 1111 245566666665433 68899999999999876666666554 677888888 6788999999999999985
Q ss_pred HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc-c----ccchhhHh---------hcCCCHHHHHHhccCCc
Q 008560 432 SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML-Y----AGNRKILR---------KDERGIVTVVQLLDPLI 497 (561)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~----~~~~~~~~---------~~~~~i~~Lv~lL~~~~ 497 (561)
.++.+.+ +..|++.+..-+..+|+.-.-=..-|+. . .+.-..+. .+++.+-+++|..-..
T Consensus 399 ~~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn- 472 (938)
T KOG1077|consen 399 VSNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN- 472 (938)
T ss_pred hhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc-
Confidence 3444444 4557777776676676643333333331 1 11111110 1224455566666542
Q ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHcCch
Q 008560 498 QNLDKKYPVAILAALVHCRKCRKQMVAAGAC 528 (561)
Q Consensus 498 ~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i 528 (561)
...+.||..-+...-..+.|.+-|++.|+.
T Consensus 473 -edlq~yaak~~fe~Lq~~a~hE~mVKvggy 502 (938)
T KOG1077|consen 473 -EDLQGYAAKRLFEYLQKPACHENMVKVGGY 502 (938)
T ss_pred -hhhhHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 345678888888888899999999999886
No 82
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.017 Score=61.47 Aligned_cols=322 Identities=16% Similarity=0.138 Sum_probs=192.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHH
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARA 271 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 271 (561)
-.+..+..-++.+.+.+|+....+|..+....+.. .+....+-+.+++..++..-+..++..+..+.... ....
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~ 169 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIES 169 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhh
Confidence 35666777778888999998888887665332211 11226777788888888888999999998886652 3334
Q ss_pred HHhcCCHHHHHHHHhcCChHHHHH-HHHHHHHhhCCchhhHHHHhhhhHHHHHHHh---hcCCHHHHHHHHHHHHHhcCC
Q 008560 272 IGSRGGISSLLEICQAGTPGSQAF-AAGVLRNLAGFSEIKENFIEENAVMVLLGLV---ASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 272 i~~~g~i~~Lv~ll~~~~~~~~~~-A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL---~~~~~~~~~~a~~~L~~L~~~ 347 (561)
+.+.+.+..|-+...+........ +.-+.-.++..-. ...|...++.+-.++ .+....++..|..+...+-..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence 555677888888887765443332 2222222211111 223445555555554 445556777766665554321
Q ss_pred ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008560 348 DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSM 427 (561)
Q Consensus 348 ~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~ 427 (561)
-+. ..-.-.++.++.-+..... +.+..++..|+.++.+....-...-...+|.+.+.|.+..+++++.+..++.+
T Consensus 247 ~~~----~aVK~llpsll~~l~~~kW-rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 247 LSA----YAVKLLLPSLLGSLLEAKW-RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred cCc----chhhHhhhhhHHHHHHHhh-hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 110 0001134444444444333 67889999999999877777777677899999999999999999999999999
Q ss_pred HcC---CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhh--cCCCHHHHHHhccCC---ccc
Q 008560 428 LGI---NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRK--DERGIVTVVQLLDPL---IQN 499 (561)
Q Consensus 428 L~~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~--~~~~i~~Lv~lL~~~---~~~ 499 (561)
++. +++... .+|.|++-+.+++..+.+. +..|.. ..|+. +.-.+..++.+|... .+.
T Consensus 322 ~~svidN~dI~~------~ip~Lld~l~dp~~~~~e~----~~~L~~-----ttFV~~V~~psLalmvpiL~R~l~eRst 386 (569)
T KOG1242|consen 322 FGSVIDNPDIQK------IIPTLLDALADPSCYTPEC----LDSLGA-----TTFVAEVDAPSLALMVPILKRGLAERST 386 (569)
T ss_pred HHHhhccHHHHH------HHHHHHHHhcCcccchHHH----HHhhcc-----eeeeeeecchhHHHHHHHHHHHHhhccc
Confidence 997 344322 3688888888666444442 333321 11221 223445555555432 223
Q ss_pred hhhHHHHHHHHHhc---CCchHHHHHHHcCchHHHHHhhccCccchH
Q 008560 500 LDKKYPVAILAALV---HCRKCRKQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 500 ~~k~~a~~~L~~La---~~~~~r~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
..++.++.+..|++ .++.--..... ..++-|.+-+...+|..|
T Consensus 387 ~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 387 SIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVR 432 (569)
T ss_pred hhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHH
Confidence 34667888877775 34433222211 123444444555566654
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.68 E-value=0.008 Score=61.65 Aligned_cols=213 Identities=24% Similarity=0.213 Sum_probs=156.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHH
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARA 271 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 271 (561)
..++.++.++.+.+..++..++..+..+. ..- +++.+..++.+.++.+|..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~--av~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEE--AVPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHH--HHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 57888999999998899999888865543 344 89999999999999999999997776522
Q ss_pred HHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHH------------HHHHHH
Q 008560 272 IGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTAL------------AQENVF 338 (561)
Q Consensus 272 i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~------------~~~~a~ 338 (561)
...++.|+..+. +.+..++..|+.+|..+- +..++..++..+.+.... ++..++
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 346889999998 588889999999998774 344588888888776532 333333
Q ss_pred HHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHH
Q 008560 339 GCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVR 418 (561)
Q Consensus 339 ~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~ 418 (561)
..|..+-. ...++.+...+..... .++..+..+|..+.... ..+.+.+...+...+..++
T Consensus 171 ~~l~~~~~-----------~~~~~~l~~~l~~~~~-~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 171 EALGELGD-----------PEAIPLLIELLEDEDA-DVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHcCC-----------hhhhHHHHHHHhCchH-HHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHH
Confidence 33333221 2357778888877654 78999999999887643 2456778888888899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 008560 419 IAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKAL 466 (561)
Q Consensus 419 ~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL 466 (561)
..++.+|..+-. .-.+..++..+.+.+..++..+..++
T Consensus 231 ~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 231 KAALLALGEIGD----------EEAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred HHHHHHhcccCc----------chhHHHHHHHHhccchHHHHHHHHHh
Confidence 999888876653 23467777777777666655554444
No 84
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.026 Score=59.29 Aligned_cols=269 Identities=16% Similarity=0.182 Sum_probs=146.5
Q ss_pred HHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHH
Q 008560 172 DSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFA 251 (561)
Q Consensus 172 ~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~ 251 (561)
+....+..+|++.+.. ..|.|-..|++.-..++-+++++++.++...- ....++ . .+..|--+|++.....
T Consensus 249 r~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~-~--~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 249 RATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD-Q--TVSSLRTFLKSTRVVL 319 (898)
T ss_pred HHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH-H--HHHHHHHHHhcchHHH
Confidence 3334444444443332 24555556666667788888888888875331 112222 2 5777777788888899
Q ss_pred HHHHHHHHHHhcCCCchH--------H-HHHhcC---CHHHHHHHHhcCChHH-------------------HHHHHHHH
Q 008560 252 KERACVALQALSFSKENA--------R-AIGSRG---GISSLLEICQAGTPGS-------------------QAFAAGVL 300 (561)
Q Consensus 252 ~~~aa~~L~~Ls~~~~~~--------~-~i~~~g---~i~~Lv~ll~~~~~~~-------------------~~~A~~aL 300 (561)
|-.|.++|..|+.....+ + .|.+.+ ..-++..+|+.|+.+. +..+..++
T Consensus 320 rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~ 399 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDAL 399 (898)
T ss_pred HHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHH
Confidence 999999999998753211 1 222211 1223334455444332 22344444
Q ss_pred HHhhCCchhhHHHHhhhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHH
Q 008560 301 RNLAGFSEIKENFIEENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEV 379 (561)
Q Consensus 301 ~nLs~~~~~r~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~ 379 (561)
+.||..-+.+.. ..+.-|...| +.|.-+.+..+..++..+...+++.|+ .+++.|..+++++.. -+.
T Consensus 400 rsLsl~Fp~k~~----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey---~~I 467 (898)
T COG5240 400 RSLSLLFPSKKL----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEY---HQI 467 (898)
T ss_pred HHHHhhCcHHHH----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcch---hHH
Confidence 444433222111 1222333333 233345666666666665555544333 234455555554332 233
Q ss_pred HHHHHHHhhc-ChhhHHHHHh-cchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HH-HHHHHHhCCChHHHHHhccCC
Q 008560 380 AVELLSQLAS-CLPIAEVLVS-DGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SK-ARKEMGECGCIGPLIKMLDGK 454 (561)
Q Consensus 380 a~~aL~~L~~-~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~-~~~~i~~~g~i~~Lv~ll~~~ 454 (561)
++++|.-|.+ .|... . ..++..+..-+--.+.-++..|+.+|.+++.+ +. ..+. +...|-..+.+.
T Consensus 468 ~vrIL~iLG~EgP~a~----~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD~ 538 (898)
T COG5240 468 TVRILGILGREGPRAK----TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLNDQ 538 (898)
T ss_pred HHHHHHHhcccCCCCC----CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhcc
Confidence 4444444443 11110 0 13456666644445678899999999999874 22 2222 245667778889
Q ss_pred CHHHHHHHHHHHHHhh
Q 008560 455 AVEEKESAAKALSTLM 470 (561)
Q Consensus 455 ~~~v~~~A~~aL~~L~ 470 (561)
++++|+.|.-+|.++-
T Consensus 539 DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 539 DDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999999886
No 85
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.61 E-value=0.0067 Score=64.53 Aligned_cols=249 Identities=14% Similarity=0.115 Sum_probs=166.4
Q ss_pred cCchhhHHHHhcCChHHHHHhh----------cCCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchhhHHHHHHHHhcC-
Q 008560 180 EDDKNVVIAVAQGVVPVLVKLM----------DSSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLLLLNHLIRVLESG- 247 (561)
Q Consensus 180 ~~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~~i~~Lv~lL~~~- 247 (561)
.++.+...+....++..|+++- ...++.+..+|+++|+|+-.. +..|..+++.| ..+.++..|+..
T Consensus 10 Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~--~~~~l~~~Lk~~~ 87 (446)
T PF10165_consen 10 RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG--LAEKLCERLKNYS 87 (446)
T ss_pred cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC--cHHHHHHHHHccc
Confidence 3444555566666677766654 234588999999999998765 56788888999 999999999987
Q ss_pred ----CHHHHHHHHHHHHHhcCC-CchHHHHHh-cCCHHHHHHHHhcC-----------------ChHHHHHHHHHHHHhh
Q 008560 248 ----SGFAKERACVALQALSFS-KENARAIGS-RGGISSLLEICQAG-----------------TPGSQAFAAGVLRNLA 304 (561)
Q Consensus 248 ----~~~~~~~aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~ll~~~-----------------~~~~~~~A~~aL~nLs 304 (561)
+.++.....++|+-++.. .+.+..+.+ ++++..++..+... +......++++++|+.
T Consensus 88 ~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit 167 (446)
T PF10165_consen 88 DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT 167 (446)
T ss_pred ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence 788999999999988874 466666665 68888888766420 1123467888889997
Q ss_pred CCchhhHHHHhhhhHHHHHHHhhc---------CCHHHHHHHHHHHHHhcCCChHH-------HHHH----HHhCcHHHH
Q 008560 305 GFSEIKENFIEENAVMVLLGLVAS---------GTALAQENVFGCLCNLVSDDESL-------KLLI----VREGGIGSL 364 (561)
Q Consensus 305 ~~~~~r~~i~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~~~~~-------r~~~----~~~g~i~~L 364 (561)
........--+...++.++.++.. .......+++.+|.|+--..... ...+ .....+..|
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L 247 (446)
T PF10165_consen 168 LHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL 247 (446)
T ss_pred hccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence 655332221223344444444321 12257788888888884322111 0001 112357778
Q ss_pred HHhhhc----CC---CHHHHHHHHHHHHHhhc-ChhhHHHHHh----------------cchHHHHHHHhcCCCHHHHHH
Q 008560 365 KSYWDS----VS---AVKSLEVAVELLSQLAS-CLPIAEVLVS----------------DGFVVRLVNVLNCGVLSVRIA 420 (561)
Q Consensus 365 v~lL~~----~~---~~~~~e~a~~aL~~L~~-~~~~~~~l~~----------------~~~i~~Lv~lL~~~~~~~~~~ 420 (561)
+.+|+. .. -.+...+.+.+|.+++. +...|..+.. ...-..|++++.+..+.++..
T Consensus 248 l~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~ 327 (446)
T PF10165_consen 248 LDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDA 327 (446)
T ss_pred HHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHH
Confidence 888764 11 12567788888999887 4555554432 244678999998888999999
Q ss_pred HHHHHHHHcC
Q 008560 421 AARAVSMLGI 430 (561)
Q Consensus 421 A~~aL~~L~~ 430 (561)
++..|+.||.
T Consensus 328 vaellf~Lc~ 337 (446)
T PF10165_consen 328 VAELLFVLCK 337 (446)
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 86
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.60 E-value=0.0014 Score=63.29 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=115.4
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--chhhHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchh
Q 008560 160 QIGSAESKNSAMDSLLGLLQED--DKNVVIAVA--QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLL 235 (561)
Q Consensus 160 ~~~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~ 235 (561)
.+.+++.|.+|+..|..++.++ ......+.+ ...+..+...+.+....+...|+.++..++..-...-.-.-..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~-- 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI-- 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH--
Confidence 4578999999999999999887 333333332 2666777777777677788889999988886433221111344
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCch-hhHHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSE-IKENFI 314 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~-~r~~i~ 314 (561)
.++.|+..+.++...++..|..+|..+...-.....+ .++.+...+.+.++..+..++..+..+...-. ....+-
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 8999999999999999999999999998764311111 14556667788899999999999988865433 222222
Q ss_pred h----hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 315 E----ENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 315 ~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
. ...++.+...+.+.+.+++..|-.++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 4578889999999999999999999988854
No 87
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.59 E-value=0.0035 Score=68.32 Aligned_cols=236 Identities=16% Similarity=0.074 Sum_probs=160.4
Q ss_pred CcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCCchHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHHHH
Q 008560 223 DSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQ-ALSFSKENARAIGSRGGISSLLEICQAGT-PGSQAFAAGVL 300 (561)
Q Consensus 223 ~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~A~~aL 300 (561)
...+...++.| +...|.++...+....+.++..+|. .+....+-. ...++++...+.... .-....++.++
T Consensus 494 K~~~~~~Ik~~--~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 494 KYERAKKIKPG--GYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred HHhcCcccccc--HHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34466778899 9999999999999999999988888 333321111 224555655554332 22346788999
Q ss_pred HHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHH-hCcHHHHHHhhhcCCCHHHHH
Q 008560 301 RNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVR-EGGIGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 301 ~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~-~g~i~~Lv~lL~~~~~~~~~e 378 (561)
.||++.+ ..|..+..+-+++.+-.++..++...|..++.++.||..+..-+.+.+++ ....+.....+.. .+.....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhh
Confidence 9999877 67888888888888788888888899999999999999988766777776 4456655566655 3335555
Q ss_pred HHHHHHHHhhc-ChhhHHHHHh-cchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCC
Q 008560 379 VAVELLSQLAS-CLPIAEVLVS-DGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKA 455 (561)
Q Consensus 379 ~a~~aL~~L~~-~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 455 (561)
.+.+++..+.. .......+.+ ......++.++.+++.++|........++.. ..+....+.....++.+..+-.-.-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66666665554 2222332333 2567778888889999999988888888654 3566666666666666655544333
Q ss_pred HHHHHHHHHHH
Q 008560 456 VEEKESAAKAL 466 (561)
Q Consensus 456 ~~v~~~A~~aL 466 (561)
...++.+...|
T Consensus 726 a~~~~~~~~~l 736 (748)
T KOG4151|consen 726 APKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhHH
Confidence 33444444444
No 88
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.087 Score=57.72 Aligned_cols=283 Identities=14% Similarity=0.116 Sum_probs=161.8
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHV 228 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~ 228 (561)
-.+..+...|++.+.-...-|+..|.+++. ++.. ....|-+.++|+..++-++.+|+-+...+-.. ++..
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~s--~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-- 177 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNICS--PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-- 177 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccCC--HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--
Confidence 345566777888877777788888877753 2222 34567777899999999999998887766432 2222
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhc---------------CChHH
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQA---------------GTPGS 292 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~---------------~~~~~ 292 (561)
+. .+++...+|.+.+..+-..+...+..++.. ++.-..+.. .++.||..|++ .+|-.
T Consensus 178 ---e~--f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 178 ---EH--FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred ---HH--hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 22 445555666655555555555556666553 333333322 45666666553 24556
Q ss_pred HHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCC------HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHH
Q 008560 293 QAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGT------ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLK 365 (561)
Q Consensus 293 ~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~------~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv 365 (561)
+...++.|+-|-.++ +..+.|.+ .|.+.....+ ..+...+..+++.|-.... .|. -++..|-
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-Lrv-----lainiLg 319 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-LRV-----LAINILG 319 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCch-HHH-----HHHHHHH
Confidence 666666666666554 33333321 2222222111 1344555555555543332 222 2344555
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChH
Q 008560 366 SYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIG 445 (561)
Q Consensus 366 ~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~ 445 (561)
++|.+.+. ..+..++..|..+...+....+=.+ ..+++.|++.+..++..|...++.|......+ .| +.
T Consensus 320 kFL~n~d~-NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~ 388 (866)
T KOG1062|consen 320 KFLLNRDN-NIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VK 388 (866)
T ss_pred HHhcCCcc-ceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HH
Confidence 55555332 5677777777776653333211111 45667788888888888888888887543333 33 35
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 446 PLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 446 ~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
.|+.+|...++..+...+.-+..++
T Consensus 389 eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 389 ELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6777777777777776666666665
No 89
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.028 Score=61.00 Aligned_cols=312 Identities=14% Similarity=0.092 Sum_probs=186.4
Q ss_pred CChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc--CCHHHHHHHHHHHHHhcCC-Cc
Q 008560 192 GVVPVLVKLMDSSSL-EMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES--GSGFAKERACVALQALSFS-KE 267 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~-~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~-~~ 267 (561)
+.+..|++-..+..+ .+++.++.+|+.++.+-+-. .+.+...+++..+++-... ++..+|-.|..+|.+--.. ..
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 455556655544443 58899999999999764433 2222111277777776654 4788999999998864332 11
Q ss_pred hHHHHHhcC-CHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 268 NARAIGSRG-GISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 268 ~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
|-..-.+.+ .++..++.-.+.+.+.+.+|..+|..+..-. +.-..-.+......-+.-+.++++++...+.+.=.++|
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 111111111 3444555556677888899999998876533 33333344445566666677888899999998888887
Q ss_pred CCChHHHH---HHHH---------------hCcHHHHHHhhhc-C-----CCHHHHHHHHHHHHHhhcChhhHHHHHhcc
Q 008560 346 SDDESLKL---LIVR---------------EGGIGSLKSYWDS-V-----SAVKSLEVAVELLSQLASCLPIAEVLVSDG 401 (561)
Q Consensus 346 ~~~~~~r~---~~~~---------------~g~i~~Lv~lL~~-~-----~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~ 401 (561)
...-++-- ..++ .+++|.|+++|.. + ++-.....|-..|.-++.+ ++..
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~ 360 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDD 360 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hccc
Confidence 64322110 1111 2467888888854 1 1112233333333333321 1233
Q ss_pred hHHHHHH----HhcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccch
Q 008560 402 FVVRLVN----VLNCGVLSVRIAAARAVSMLGINS-KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNR 476 (561)
Q Consensus 402 ~i~~Lv~----lL~~~~~~~~~~A~~aL~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~ 476 (561)
.++++.. -+++.+..-++.|+.++..+-..+ ..+..-...+++|.++.++.+++--+++.+++.|..++.+.+..
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 4444444 556778899999999999998743 23333334578999999999888889999999999998544311
Q ss_pred -hhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 477 -KILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 477 -~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
.--.....-+..+++-|..++.. -..+.+++.+|+
T Consensus 441 ~~n~~~l~~~l~~l~~gL~DePrv--a~N~CWAf~~La 476 (859)
T KOG1241|consen 441 IINQELLQSKLSALLEGLNDEPRV--ASNVCWAFISLA 476 (859)
T ss_pred cccHhhhhHHHHHHHHHhhhCchH--HHHHHHHHHHHH
Confidence 00001112344455555443332 234777777775
No 90
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.51 E-value=0.00081 Score=54.11 Aligned_cols=85 Identities=19% Similarity=0.358 Sum_probs=69.5
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHH
Q 008560 194 VPVLVKLM-DSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAI 272 (561)
Q Consensus 194 v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 272 (561)
|+.|++.| +++++.++..++.+|..+. ... +++.|++++++.++.+|..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~--~~~~L~~~l~d~~~~vr~~a~~aL~~i---------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPE--AIPALIELLKDEDPMVRRAAARALGRI---------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHH--HHHHHHHHHTSSSHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHh--HHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Confidence 68899988 8888999999999998442 335 899999999999999999999999987
Q ss_pred HhcCCHHHHHHHHhcCCh-HHHHHHHHHH
Q 008560 273 GSRGGISSLLEICQAGTP-GSQAFAAGVL 300 (561)
Q Consensus 273 ~~~g~i~~Lv~ll~~~~~-~~~~~A~~aL 300 (561)
+...+++.|.+++.+.+. ..+..|+.+|
T Consensus 59 ~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 234589999999987654 4577787776
No 91
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.024 Score=61.72 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=156.1
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-hH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS-KH 227 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~-~~ 227 (561)
......+...++.+++..|..++.....+-.. +.....+.|.++.|..++.+.+|.+..+|+.+|..+...+.+ ..
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 44567888999999999999888877666443 344556789999999999999999999999999999865432 11
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
.....- .+..++..+..-+ --.-+.+|..++... +..++ ...++.+...+.+.++.+.-.+..++.++..
T Consensus 197 ~~l~~~--~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 197 LELNPQ--LINKLLEALNECT---EWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccccHH--HHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 111111 2333333332222 222334444554431 11111 1234455556667777777788888888876
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc--CCCHHHHHHHHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS--VSAVKSLEVAVEL 383 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~--~~~~~~~e~a~~a 383 (561)
.............-++|+.++..+. +.+.-++.=+.-+-...+. ....-.+.+.. .++.-++..=+.+
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---------~~~~~~~~Ff~kynDPiYvK~eKlei 338 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---------ILKVEIKVFFCKYNDPIYVKLEKLEI 338 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---------HHHhHhHeeeeecCCchhhHHHHHHH
Confidence 5544444445566677777777666 5555444333222222221 11111111111 1112333334444
Q ss_pred HHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 008560 384 LSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAA 463 (561)
Q Consensus 384 L~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~ 463 (561)
+..++... +..+ .+.-+.+.-...+.+....+++++.+++.--+-. .+++..|+.+++.+-..+...+.
T Consensus 339 l~~la~~~-nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~ 407 (734)
T KOG1061|consen 339 LIELANDA-NLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAI 407 (734)
T ss_pred HHHHhhHh-HHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehh
Confidence 44444321 1111 2233333334445555666666666665421111 45666666666654444444444
Q ss_pred HHHHHhhc
Q 008560 464 KALSTLML 471 (561)
Q Consensus 464 ~aL~~L~~ 471 (561)
..++.+..
T Consensus 408 vvi~dilR 415 (734)
T KOG1061|consen 408 VVIRDILR 415 (734)
T ss_pred HHHHhhhh
Confidence 55555554
No 92
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.44 E-value=0.032 Score=59.39 Aligned_cols=259 Identities=17% Similarity=0.095 Sum_probs=171.7
Q ss_pred HHHHHHHhcCCcchHHHHHhchhhHHHHHHHH----------hcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHH
Q 008560 213 VASIARVSMVDSSKHVLIAEGLLLLNHLIRVL----------ESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSL 281 (561)
Q Consensus 213 ~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL----------~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~L 281 (561)
+.+|..++.+..+...+.... ++..|.+.- ...+..+...|.++|.|+...+ ..+..+.+.|..+.+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~--~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEE--GLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHH--HHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 566777888887777777777 777777665 2347889999999999998875 577788889999999
Q ss_pred HHHHhcC-----ChHHHHHHHHHHHHhhCCc-hhhHHHHhh-hhHHHHHHHhhc-----------------CCHHHHHHH
Q 008560 282 LEICQAG-----TPGSQAFAAGVLRNLAGFS-EIKENFIEE-NAVMVLLGLVAS-----------------GTALAQENV 337 (561)
Q Consensus 282 v~ll~~~-----~~~~~~~A~~aL~nLs~~~-~~r~~i~~~-g~v~~Lv~lL~~-----------------~~~~~~~~a 337 (561)
++.++.. +.+..-...+.|+-++... +.+..++++ +++..++..+.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999877 6777888899998887654 778787755 777777776631 122456677
Q ss_pred HHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc--------CCCHHHHHHHHHHHHHhhc-Chhh-------HHH----H
Q 008560 338 FGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS--------VSAVKSLEVAVELLSQLAS-CLPI-------AEV----L 397 (561)
Q Consensus 338 ~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~--------~~~~~~~e~a~~aL~~L~~-~~~~-------~~~----l 397 (561)
+..+-|++...+.... -.....++.++.++.. ..-....-+++.+|.|+-. +... ... .
T Consensus 160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 8888888876542111 1223345555544432 1122566677777777732 1111 000 0
Q ss_pred HhcchHHHHHHHhcCC----C----HHHHHHHHHHHHHHcC-CHHHHHHHHh----------------CCChHHHHHhcc
Q 008560 398 VSDGFVVRLVNVLNCG----V----LSVRIAAARAVSMLGI-NSKARKEMGE----------------CGCIGPLIKMLD 452 (561)
Q Consensus 398 ~~~~~i~~Lv~lL~~~----~----~~~~~~A~~aL~~L~~-~~~~~~~i~~----------------~g~i~~Lv~ll~ 452 (561)
.....+..|+.+|... . .+.-.-.+.+|.+++. +...|+.+.. ...-..|++++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1124577888877532 1 1223334567777776 3556665543 234679999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccc
Q 008560 453 GKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 453 ~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
+..+.++..+++.|+.|+..+.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhhH
Confidence 7779999999999999985443
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.41 E-value=0.0012 Score=53.02 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=72.0
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 008560 278 ISSLLEIC-QAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIV 356 (561)
Q Consensus 278 i~~Lv~ll-~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~ 356 (561)
|+.|++.+ .+.++..+..++.+|.++. +..+++.|++++.+++..++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57899988 7888999999999998442 3367999999999999999999999999873
Q ss_pred HhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 357 REGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 357 ~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
...+++.|.+++.++++..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23489999999998877778899988874
No 94
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0099 Score=62.27 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=152.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHH-hchhhHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCC
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIA-EGLLLLNHLIRVLESGSGFAKERACVALQA----LSFSK 266 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~-~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~----Ls~~~ 266 (561)
++||.|-.-+...++..|...+.-|..|-..++. +.+-- .. .++-|..+|...+.++|..+-.+|.+ +..++
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~-~m~~yl~~--~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL-EMISYLPS--LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH-HHHhcchH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444444455788888888888777544432 22211 34 77888999999999999766655444 33333
Q ss_pred chHHHHHh-cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH-HHHHHHHHH---H
Q 008560 267 ENARAIGS-RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTA-LAQENVFGC---L 341 (561)
Q Consensus 267 ~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~---L 341 (561)
+.- + ...++.|+..+.+..+..+..|..-+.....-....--..-.|++..++.++.+..+ ..++.+... |
T Consensus 244 ~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 244 SSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred ccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 221 2 346888888999999999988887777766554333333346777777777776655 355544333 3
Q ss_pred HHhcCCChHHHHHHHHh-CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHH
Q 008560 342 CNLVSDDESLKLLIVRE-GGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIA 420 (561)
Q Consensus 342 ~~L~~~~~~~r~~~~~~-g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 420 (561)
..+..... ..+. ++. ..++.|.+++..+. .+.+..++.-+..|-....+.-....+...+.|+.-|.+.++++...
T Consensus 320 ~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 320 LKLVSSER-LKEE-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHHhhhh-hccc-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 34433221 1222 332 35777888887755 47888888888888765455444444578899999999999999999
Q ss_pred HHHHHHHHcCCHHH
Q 008560 421 AARAVSMLGINSKA 434 (561)
Q Consensus 421 A~~aL~~L~~~~~~ 434 (561)
+...+.++|.+++.
T Consensus 397 ~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 397 ALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHhcCccc
Confidence 99999999986443
No 95
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.34 E-value=0.013 Score=57.39 Aligned_cols=230 Identities=17% Similarity=0.157 Sum_probs=157.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCchHHHHHh-c
Q 008560 199 KLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES--GSGFAKERACVALQALSFSKENARAIGS-R 275 (561)
Q Consensus 199 ~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~ 275 (561)
.++..-++-.+-.|+.++.++....+.|..+-.++ +.-..++.++++ |....+.+...+++-|+.+++..+.|-. -
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waen-tcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAEN-TCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh-hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444456688899999999999988887666554 256678888887 4678999999999999999888766555 3
Q ss_pred CCHHHHHHHHhcC-ChHHHHHHHHHHHHhhC-Cc-hhhHHHHhhhhHHHHHHHhhcC---CHHHHH---HHHHHH----H
Q 008560 276 GGISSLLEICQAG-TPGSQAFAAGVLRNLAG-FS-EIKENFIEENAVMVLLGLVASG---TALAQE---NVFGCL----C 342 (561)
Q Consensus 276 g~i~~Lv~ll~~~-~~~~~~~A~~aL~nLs~-~~-~~r~~i~~~g~v~~Lv~lL~~~---~~~~~~---~a~~~L----~ 342 (561)
.-+.-|+.+.+.. ...+-+.+++.+.|++. .+ +.-..+.-.|-+..-++.|... +++++. .--..| .
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 5677788887754 34556889999999987 32 3444444455445555555422 122111 111111 1
Q ss_pred HhcCCCh-----------------------HHHHHHHHh--CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 008560 343 NLVSDDE-----------------------SLKLLIVRE--GGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEV 396 (561)
Q Consensus 343 ~L~~~~~-----------------------~~r~~~~~~--g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~ 396 (561)
.+|..+. .+-..+.+. ..+..|.++++...+......|+.=|..+.+ .|+++..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 1111110 122233332 3578888999886554455677777888886 9999999
Q ss_pred HHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 397 LVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 397 l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
+...|+=+.+..++.+.+++++-.|..++..+.
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.0074 Score=67.32 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH-HhcCCcchHHHHHhchhhHHHHHHHHh
Q 008560 167 KNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIAR-VSMVDSSKHVLIAEGLLLLNHLIRVLE 245 (561)
Q Consensus 167 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~-La~~~~~~~~i~~~g~~~i~~Lv~lL~ 245 (561)
|.+|+.-|..++.-.+=.......-|..|.+++||.++..+++---+=+-.. |+.|+.+...+++++ +-.-++++|.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~--g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKEN--GYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhcc--CceeEEEEec
Confidence 6778888888876555445555567999999999999988877554444443 677888888899988 7777777776
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHH
Q 008560 246 SGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLG 324 (561)
Q Consensus 246 ~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~ 324 (561)
.+. .-+++.+..|+-+|..++.+- -.+....+.+.+..-..
T Consensus 565 ~~~--------------------------------------~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle 606 (1387)
T KOG1517|consen 565 PSQ--------------------------------------AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLE 606 (1387)
T ss_pred CcC--------------------------------------CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHH
Confidence 620 001334444444454444433 33444455667777777
Q ss_pred HhhcC-CHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-----ChhhHHHH-
Q 008560 325 LVASG-TALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-----CLPIAEVL- 397 (561)
Q Consensus 325 lL~~~-~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-----~~~~~~~l- 397 (561)
.++++ ..-++.-.+-||..|-.+.+..|-.=.+.++.+.|..+|.++. ++++..|+-+|+.+-+ +++....+
T Consensus 607 ~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v-pEVRaAAVFALgtfl~~~~d~fde~~~~~~ 685 (1387)
T KOG1517|consen 607 HLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV-PEVRAAAVFALGTFLSNGSDNFDEQTLVVE 685 (1387)
T ss_pred HhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc-HHHHHHHHHHHHHHhcccccccchhhhhhh
Confidence 77775 4567788889999999888888888888899999999998755 5999999999999986 44443322
Q ss_pred --H--------hcchHH----HHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 398 --V--------SDGFVV----RLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 398 --~--------~~~~i~----~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
+ .+..+. .++.++..+++-++.+.+.+|.++..
T Consensus 686 ~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 686 EEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 1 112233 66777788889888888888888875
No 97
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0056 Score=65.15 Aligned_cols=221 Identities=15% Similarity=0.062 Sum_probs=145.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC---c----h
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF---S----E 308 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~---~----~ 308 (561)
++..|+.+...++..+|.+|+.+|..|+....-... .....++++++....++.+|...++-.+.. + .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 566688888888999999999999988774322222 245577889999999999998777655432 1 1
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHh-
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQL- 387 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L- 387 (561)
...++++ .++..+.+.+.+.+-.++..|+.+|..+...++.+-.+-.+..++.-+-+-= ...+..-....+-
T Consensus 274 ~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr------~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 274 EEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR------TAHKRPKALYSSGE 346 (823)
T ss_pred hhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh------hcccchHHHHhcCC
Confidence 2333333 4777788888888889999999999988776554333222222222110000 0001111111111
Q ss_pred --------hc-----ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHhccC
Q 008560 388 --------AS-----CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECGCIGPLIKMLDG 453 (561)
Q Consensus 388 --------~~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 453 (561)
+. .++.-..++.+|+...+|.-|.+.=.+++++|+..++.|+.+ +...... +.-|+.|+.+
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfND 421 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFND 421 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhcc
Confidence 00 122344566778888888888777779999999999999974 5444333 5778889988
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 008560 454 KAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 454 ~~~~v~~~A~~aL~~L~~~~ 473 (561)
....+|..|..+|..++.+-
T Consensus 422 E~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88889999999988888663
No 98
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0023 Score=66.44 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=173.3
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 008560 188 AVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK 266 (561)
Q Consensus 188 i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 266 (561)
+.+...+++|+.+|+.++..+.--+...++++-.. ..-+..+.+.| .+..|+.++.+.+...|.+..|.|..+..+.
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~--iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKS--IIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhh--HHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 44567888899998886655555566677776543 44577888999 9999999999888899999999999998875
Q ss_pred c--hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-h---hhH---HHHhhh-hHHHHHHHhhcCCHHHHHH
Q 008560 267 E--NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-E---IKE---NFIEEN-AVMVLLGLVASGTALAQEN 336 (561)
Q Consensus 267 ~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~---~r~---~i~~~g-~v~~Lv~lL~~~~~~~~~~ 336 (561)
+ .+-.+.+.-|+..+++++.+..-..+..+..+|+|+..+. . .+. +++... ....|++.+...++-..+.
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 4 3446667778999999999999999999999999997633 2 222 222222 4455666677666655666
Q ss_pred HHHHHHHhcCCChHHHHHHHHh-CcHHHHHHhhhcC---------C-CHHHHHHHHHHHHHhhcChhhHHHHHhcchHHH
Q 008560 337 VFGCLCNLVSDDESLKLLIVRE-GGIGSLKSYWDSV---------S-AVKSLEVAVELLSQLASCLPIAEVLVSDGFVVR 405 (561)
Q Consensus 337 a~~~L~~L~~~~~~~r~~~~~~-g~i~~Lv~lL~~~---------~-~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~ 405 (561)
.+-.|.+++..++..+..+.+. ..+..+-.++... + +..+.-+-.....++..+. |...+
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~---------d~f~r 655 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENS---------DKFKR 655 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccc---------ccccc
Confidence 6888889888888777766654 3444444444321 0 0011111122222222211 11111
Q ss_pred HHH------Hhc----CCCHHHHHHHHHHHHHHcCC----H------HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 008560 406 LVN------VLN----CGVLSVRIAAARAVSMLGIN----S------KARKEMGECGCIGPLIKMLDGKAVEEKESAAKA 465 (561)
Q Consensus 406 Lv~------lL~----~~~~~~~~~A~~aL~~L~~~----~------~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~a 465 (561)
.+. ... ..+.+...+-.+...++... + +-.+.+.+.|.-..|+++....++.+|+++..+
T Consensus 656 ~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~ta 735 (743)
T COG5369 656 LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTA 735 (743)
T ss_pred ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHH
Confidence 111 111 12334555555555555431 1 334455555655555555557788999999999
Q ss_pred HHHhh
Q 008560 466 LSTLM 470 (561)
Q Consensus 466 L~~L~ 470 (561)
|.++-
T Consensus 736 L~~l~ 740 (743)
T COG5369 736 LENLR 740 (743)
T ss_pred HHhhh
Confidence 98873
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0055 Score=65.23 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=160.2
Q ss_pred HHHhHHH-HHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----
Q 008560 148 VRAESRN-LITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV---- 222 (561)
Q Consensus 148 ~~~~v~~-Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~---- 222 (561)
.+..++. +......++...+..|+..|..|.... +--+ -.....++++++.+.+++..|+..+...+.-
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444444 666666777778888888887775422 1111 2345577888888899999998877666531
Q ss_pred -C-c-chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhcCChHHHHHHHH
Q 008560 223 -D-S-SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQAGTPGSQAFAAG 298 (561)
Q Consensus 223 -~-~-~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~ 298 (561)
+ + ....+. .. ++..+.+.+...+..+|..|+.+|..+...++ .-..-... .++.-++.. ........
T Consensus 269 ~e~e~~e~kl~-D~--aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRk--r~ahkrpk 339 (823)
T KOG2259|consen 269 LERESEEEKLK-DA--AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRK--RTAHKRPK 339 (823)
T ss_pred ccchhhhhhhH-HH--HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhh--hhcccchH
Confidence 1 1 122232 23 79999999999999999999999988755432 11111111 111111100 00000111
Q ss_pred HHH-Hh--hC------------CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHH
Q 008560 299 VLR-NL--AG------------FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGS 363 (561)
Q Consensus 299 aL~-nL--s~------------~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~ 363 (561)
.++ +- ++ .++--..++..|+--.++.-++++-.+++.+|...++.|+...+.+- ...++-
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldf 414 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDF 414 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHH
Confidence 111 11 00 12334567788888899999988777999999999999998776432 235778
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 008560 364 LKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSML 428 (561)
Q Consensus 364 Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 428 (561)
|+.++.++.. .++..|+.+|..++.+-.. +..-++.+...|.+.+.+++++.-..|.+.
T Consensus 415 LvDMfNDE~~-~VRL~ai~aL~~Is~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 415 LVDMFNDEIE-VVRLKAIFALTMISVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHhccHHH-HHHHHHHHHHHHHHHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887654 8999999999998865222 223456677777777777777665555443
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.015 Score=64.93 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=146.0
Q ss_pred HHHHHHHHHhhCCchhhHHH----HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhh
Q 008560 294 AFAAGVLRNLAGFSEIKENF----IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWD 369 (561)
Q Consensus 294 ~~A~~aL~nLs~~~~~r~~i----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~ 369 (561)
..=.+||.-|+..-+.-... ..-|+.|-.++||++...+++..-+-+=..|-..|++++..+++++|-.-.+..|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 34455666665544332222 35699999999999999999888888888888888999999999998887788887
Q ss_pred c-C-CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHhCCCh
Q 008560 370 S-V-SAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCG-VLSVRIAAARAVSMLGIN-SKARKEMGECGCI 444 (561)
Q Consensus 370 ~-~-~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i 444 (561)
+ . -+++-+..|+-+|..++. ++-+++...+.+.+..-++.|.++ .+-.++-.+.+|..|=.+ ++.+-.=.+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 6 2 235888999999999997 888999999989999888889875 577888899999998774 5666666677899
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 445 GPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 445 ~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
.+|..++.+..++||..|.-+|..+..+.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998754
No 101
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.024 Score=61.84 Aligned_cols=284 Identities=18% Similarity=0.166 Sum_probs=169.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.+.++-+.+.+...+.|.+|++.+..-..-..+ -.+..+-++......|.+.+.-.---|.+-+...-..
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~---- 83 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL---- 83 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH----
Confidence 344455555444446667777666543322211 1355666777777777666555555555555432111
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhh
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIK 310 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r 310 (561)
..+ ++..++.=.++.++..|..|.+.+..+... .+.+ -...+|.+.++++++.+++.++-...++=. ...
T Consensus 84 a~~--avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~ 153 (734)
T KOG1061|consen 84 AIL--AVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KITE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDP 153 (734)
T ss_pred HHh--hhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HHHH-HHHHHHHHhccCCChhHHHHHHHHHHHhhc--CCh
Confidence 223 566666666677888888888887766444 2222 257788899999999999888877777643 344
Q ss_pred HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-
Q 008560 311 ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS- 389 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~- 389 (561)
+...+.|.++.|-.++.+.++.+..+|+.+|.++...+++.-......-.+..++..+... ....-+.+|.+++.
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhc
Confidence 5556789999999999988889999999999999876542110111111233333333321 22223344444443
Q ss_pred Chhh-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 008560 390 CLPI-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESA 462 (561)
Q Consensus 390 ~~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A 462 (561)
.+.. ++. ...+..+...|.+.+..+...+..++..+...........-....++|+.++...+ +.+-.|
T Consensus 230 ~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyva 299 (734)
T KOG1061|consen 230 VPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVA 299 (734)
T ss_pred CCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHH
Confidence 1111 111 13567777788888888888888888888764332333333456778888877655 555543
No 102
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.08 E-value=0.1 Score=58.19 Aligned_cols=189 Identities=17% Similarity=0.087 Sum_probs=104.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChH-----HHHHHHH-----hCcHHHHHHhhhcCCCH------------
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSDDES-----LKLLIVR-----EGGIGSLKSYWDSVSAV------------ 374 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-----~r~~~~~-----~g~i~~Lv~lL~~~~~~------------ 374 (561)
+.-..+++.+++++++++..|.-+|.+++.++-. +...+.. .=.+..|...+...+..
T Consensus 857 e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~l 936 (1233)
T KOG1824|consen 857 ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWAL 936 (1233)
T ss_pred hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455678888999999999999999999997621 1111111 11233333333332211
Q ss_pred ----------HHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCC
Q 008560 375 ----------KSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECG 442 (561)
Q Consensus 375 ----------~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g 442 (561)
..|-.....|+.|+. .| ...+|.|-..++++.+..+..++.++--.-.. +.-.+.+ ...
T Consensus 937 L~k~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~-lk~ 1007 (1233)
T KOG1824|consen 937 LFKHCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPL-LKQ 1007 (1233)
T ss_pred HHHhcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHH-HHH
Confidence 122222333333322 11 13466666677777666665555444222221 2211222 123
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCC---------------------ccchh
Q 008560 443 CIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPL---------------------IQNLD 501 (561)
Q Consensus 443 ~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~---------------------~~~~~ 501 (561)
.+...+.++++++..||+.|..++..-+. |+..+++| -.+.|+..|-++ ++-..
T Consensus 1008 ~ig~fl~~~~dpDl~VrrvaLvv~nSaah---NKpslIrD--llpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~ 1082 (1233)
T KOG1824|consen 1008 QIGDFLKLLRDPDLEVRRVALVVLNSAAH---NKPSLIRD--LLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDL 1082 (1233)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHc---cCHhHHHH--HHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHH
Confidence 47788999999999999987776665554 44446555 666666666321 12234
Q ss_pred hHHHHHHHHHhcCCchHH
Q 008560 502 KKYPVAILAALVHCRKCR 519 (561)
Q Consensus 502 k~~a~~~L~~La~~~~~r 519 (561)
++.|.-|+++|.++...+
T Consensus 1083 RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1083 RKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 566778888776544433
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.34 Score=52.53 Aligned_cols=275 Identities=15% Similarity=0.129 Sum_probs=153.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCchHHHHHh
Q 008560 197 LVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG--SGFAKERACVALQALSFSKENARAIGS 274 (561)
Q Consensus 197 Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~ 274 (561)
+-.=|.+.|+....-|+.++.++.+-+ .+ +. .-+-+-++|-+| ...+|..||-+|..|-...+. .+-.
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~re-~~-----ea--~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--l~~~ 185 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGSRE-MA-----EA--FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--LVNP 185 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhccHh-HH-----HH--hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc--ccCh
Confidence 334455667777778888888875321 11 12 233344777777 356889999999888764211 1111
Q ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhc-------------CCHHHHHHHHH
Q 008560 275 RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVAS-------------GTALAQENVFG 339 (561)
Q Consensus 275 ~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~-------------~~~~~~~~a~~ 339 (561)
.+-...++.+|.+.+-.+..++...+--|+... +.+..+ .-+|..|..+... +.+=++...++
T Consensus 186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r 263 (938)
T KOG1077|consen 186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR 263 (938)
T ss_pred hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence 233667777777766555556666665565433 222221 1122223222211 12235667777
Q ss_pred HHHHhcCCC-hHHHHHHHHhCcHHHHHHhhhcC-CCHHHH-----HHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhc
Q 008560 340 CLCNLVSDD-ESLKLLIVREGGIGSLKSYWDSV-SAVKSL-----EVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLN 411 (561)
Q Consensus 340 ~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~-----e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~ 411 (561)
+|.+.-..+ +..|..+.+ +++.++...+.+ ....++ -..+--.-+|+. .++..+.+ ...+..|.++|.
T Consensus 264 lLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls 339 (938)
T KOG1077|consen 264 LLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLS 339 (938)
T ss_pred HHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhh
Confidence 777775432 233333222 233333333321 111111 111111222332 12222222 246788888999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHH
Q 008560 412 CGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVV 490 (561)
Q Consensus 412 ~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv 490 (561)
+....++--|...++.|+.++...+++..+ ....+..|+ ..+..+|++|.++|+.++.. +|.+.++. .++
T Consensus 340 ~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~------elL 410 (938)
T KOG1077|consen 340 HRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVA------ELL 410 (938)
T ss_pred cccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHH------HHH
Confidence 999999999999999999876666666554 566777777 68889999999999888754 45555544 366
Q ss_pred HhccCC
Q 008560 491 QLLDPL 496 (561)
Q Consensus 491 ~lL~~~ 496 (561)
+.|.+.
T Consensus 411 qYL~tA 416 (938)
T KOG1077|consen 411 QYLETA 416 (938)
T ss_pred HHHhhc
Confidence 666554
No 104
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.03 E-value=0.0016 Score=43.93 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=35.8
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008560 182 DKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVS 220 (561)
Q Consensus 182 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La 220 (561)
++++..+.+.|+++.|+.++.+++++++..++.+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888899999999999999989999999999999986
No 105
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.97 E-value=0.02 Score=51.07 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=97.0
Q ss_pred HHHHhhhhHHHHHHHhhcCCH------HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC-CHHHHHHHHHH
Q 008560 311 ENFIEENAVMVLLGLVASGTA------LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS-AVKSLEVAVEL 383 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~~~~~------~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~-~~~~~e~a~~a 383 (561)
..++..|++..|+++++++.. +....++.++.+|-.++. .-........|...+.++.... +..+...++.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356788999999999998773 666778888888776542 3344556667788888887643 67899999999
Q ss_pred HHHhhcChhh-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHH
Q 008560 384 LSQLASCLPI-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMG 439 (561)
Q Consensus 384 L~~L~~~~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~ 439 (561)
|.++..+... ...+.+.--++.|+..|+..+.+++.+|...+-.|.. +++-++.+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999975444 5555555669999999999999999999988888875 344455443
No 106
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.43 Score=51.91 Aligned_cols=228 Identities=11% Similarity=0.111 Sum_probs=140.2
Q ss_pred chHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-
Q 008560 144 KREAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV- 222 (561)
Q Consensus 144 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~- 222 (561)
..+-.|...++++..|.+..+..|.+|+-.+..+.-.-++.. ...+|.|+.=|+.+||.++..|+.+++.|+.-
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 345567778888999988888888888888877765433322 34578899999999999999999999998862
Q ss_pred Ccch--------HHHH-----------------------HhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHh--cCC-Cc
Q 008560 223 DSSK--------HVLI-----------------------AEGLLLLNHLIRVLESGS-GFAKERACVALQAL--SFS-KE 267 (561)
Q Consensus 223 ~~~~--------~~i~-----------------------~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~L--s~~-~~ 267 (561)
+.+. +.++ .-|.+.+++|..++++.+ +.+...+..++-.- +.. ++
T Consensus 213 PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 2221 1111 112235677777777653 23333444443322 221 12
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 008560 268 NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 347 (561)
+-..+- =.+..|-.++.+.++..+..++-++..+.....- .+.+ --..++++|.+.++.++..|+..|..+...
T Consensus 293 ~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 293 HSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred cHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 221111 1467777788899999999999999988754311 1111 224567888999999999999999988664
Q ss_pred ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 348 DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 348 ~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
+. ++ . .+..|+..+....+...+...+.-+-.+|+
T Consensus 367 kN-l~-e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 367 KN-LM-E-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred hh-HH-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 32 11 1 233444444333332444444444444554
No 107
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.73 Score=50.71 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=85.4
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
+....+..|+...+.+.+.|.-.-..|...+.+++.-. -=-|..+-+-|+++|+.+|-.|+++|..+- -
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIR------v 137 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIR------V 137 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------h
Confidence 44566667777777777777666666666666554322 124667778889999999999999887652 2
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
-++..= ++-++-+.....++.+|..||.++-.|-.- ++.+..+ ++.+=.+|.+.++.+...|+-+.-..|
T Consensus 138 p~IaPI--~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 138 PMIAPI--MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hhHHHH--HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 233333 334444455567889999999998888553 3333332 233334555555555544444444443
No 108
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.58 Score=49.66 Aligned_cols=302 Identities=13% Similarity=0.084 Sum_probs=169.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcC
Q 008560 198 VKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRG 276 (561)
Q Consensus 198 v~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 276 (561)
.+.|+++.|.....|+..+..++.-+-.-. .=.| .+..+++-...+ ....+..+..++.+.+.+......+...+
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~--~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN 175 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNS--LWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSN 175 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccc--cchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhh
Confidence 346677778888888888887774321000 0012 333334433333 56788899999999988766655555554
Q ss_pred CH-HHHH-HHHhcC-ChHHHHHHHHHHHH-hhCCchhhHHHHhhh----hHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 008560 277 GI-SSLL-EICQAG-TPGSQAFAAGVLRN-LAGFSEIKENFIEEN----AVMVLLGLVASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 277 ~i-~~Lv-~ll~~~-~~~~~~~A~~aL~n-Ls~~~~~r~~i~~~g----~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
.+ -.++ ..++++ +..++-.|+++|.+ |-. ++..+..++ .+.+.++.-+..+.+++..+..||..|-.-.
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 32 2222 234444 45567788888887 322 333343333 3344556667788899999999999887643
Q ss_pred hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh-hhHHHH-------------H---hcchHHHHHHHhc
Q 008560 349 ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCL-PIAEVL-------------V---SDGFVVRLVNVLN 411 (561)
Q Consensus 349 ~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~-~~~~~l-------------~---~~~~i~~Lv~lL~ 411 (561)
-.+-....+.....-..+.+.+.++ ++...++..-..+|..+ ++--++ . -.+++|.|+.+|.
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd-~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQND-EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 3333333343334444456666665 78888888877777421 110000 0 1246888999886
Q ss_pred CC-------CHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc--cchhhHhhc
Q 008560 412 CG-------VLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA--GNRKILRKD 482 (561)
Q Consensus 412 ~~-------~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~--~~~~~~~~~ 482 (561)
.. +......|..+|.-++.. ....|.+- +..-.-+=+++.+..-++.|..++......+ ..+..++.+
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~q 408 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQ 408 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHH--hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHh
Confidence 42 235666777777666531 11122111 1222222344677778999999998887433 223333322
Q ss_pred CCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 483 ERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 483 ~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
.++.+..+...+ ..-.|.-+.+|+..++
T Consensus 409 --alp~i~n~m~D~-~l~vk~ttAwc~g~ia 436 (858)
T COG5215 409 --ALPGIENEMSDS-CLWVKSTTAWCFGAIA 436 (858)
T ss_pred --hhHHHHHhcccc-eeehhhHHHHHHHHHH
Confidence 555555555321 2234555667766665
No 109
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.90 E-value=0.01 Score=57.20 Aligned_cols=179 Identities=16% Similarity=0.043 Sum_probs=109.1
Q ss_pred hcCCHHHHHHHHHHHHHhcCCC---chHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhH
Q 008560 245 ESGSGFAKERACVALQALSFSK---ENARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAV 319 (561)
Q Consensus 245 ~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v 319 (561)
.+.+.+.|..+..-|..+.... +....+.. ...+..++..+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3457888888888888886643 23333333 244556666666666778889999999988655433332345688
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCc-HHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 008560 320 MVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGG-IGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVL 397 (561)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~-i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l 397 (561)
+.|++.+.++...++..|..+|..++....... .. ++.+...+.+ .++.++..++..+..+.. .+.....+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 999999999888999999999999987643101 11 2233333333 446899999999999875 43111111
Q ss_pred Hh----cchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 398 VS----DGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 398 ~~----~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
-. ..+++.+...+.+.++++++.|-.+++.+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 11 2467788888999999999999999999965
No 110
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.83 E-value=0.0029 Score=42.67 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 432 SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
++++..+.+.|+++.|+.++.++++.++..|+++|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999889999999999999986
No 111
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0054 Score=63.81 Aligned_cols=187 Identities=11% Similarity=0.038 Sum_probs=140.5
Q ss_pred HHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCC
Q 008560 295 FAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSA 373 (561)
Q Consensus 295 ~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~ 373 (561)
+++..|..++..- -.|.-+.+..++..|+++|+.++..+..-+...++|..-.-...+..+.+.|.+..|++++.+.++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444444555432 567788888999999999998877777888888999888777789999999999999999997655
Q ss_pred HHHHHHHHHHHHHhhc-Chhh-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HHHHHHHHhCC----C
Q 008560 374 VKSLEVAVELLSQLAS-CLPI-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN----SKARKEMGECG----C 443 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~-~~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~----~~~~~~i~~~g----~ 443 (561)
..+....+.++++.. +.++ +-++...-++..++.+..+....+|+....+|.|+.++ ++.+....+.. .
T Consensus 488 -aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 -ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred -hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 899999999999985 3333 33444556788999999988899999999999999883 22333333332 2
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhc
Q 008560 444 IGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKD 482 (561)
Q Consensus 444 i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 482 (561)
.+.|++.++..+|..-+..+-.|.+++...++-+.+++.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 456667777666666666688888888777776666543
No 112
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.80 E-value=0.06 Score=59.85 Aligned_cols=265 Identities=14% Similarity=0.122 Sum_probs=155.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEG 233 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g 233 (561)
.|++.+.+.+-+.|..|...|..=+.++..+-..=.+...+..|+++|++.++++|..|+.+|+-|+.. .++.=+ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~l-e~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQL-ET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHH-HH
Confidence 677788888888888888877665554422211112346788899999999999999999999988732 111000 11
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcC------ChHHHHHHHHHHHHhhC-
Q 008560 234 LLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAG------TPGSQAFAAGVLRNLAG- 305 (561)
Q Consensus 234 ~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~------~~~~~~~A~~aL~nLs~- 305 (561)
.++.|..-+-+|....|..+...|.....+ +..........+.+.+...+..+ ....+..++..+..+-.
T Consensus 86 --~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 86 --IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred --HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 334444433445555555555555544332 32222222223333333333322 22244455554443321
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
..+.-.. .+.+...+++.-+.+....++..|+.+|..++..... ..-.+.++.|++=|...........-+.+|.
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~----~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR----DLYVELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 1122222 3456677777777788788999999999999875431 1222456667776666555555556666677
Q ss_pred HhhcChhhHHHHHhc--chHHHHHHHh---cCCCHHHHHHHHHHHHHHcC
Q 008560 386 QLASCLPIAEVLVSD--GFVVRLVNVL---NCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 386 ~L~~~~~~~~~l~~~--~~i~~Lv~lL---~~~~~~~~~~A~~aL~~L~~ 430 (561)
.+|+.... .+..+ ..++.+.++. ...+++.++....++..|..
T Consensus 239 ~i~r~ag~--r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 239 AICRQAGH--RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHhcc--hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 66653221 22233 4578888888 66778999999888888764
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.76 E-value=0.21 Score=49.24 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHh-cCCHHHHHHHHhc--CChHHHHHHHHHHHHhhCCchhhHHHHh-hhhHHHHH
Q 008560 248 SGFAKERACVALQALSFSKENARAIGS-RGGISSLLEICQA--GTPGSQAFAAGVLRNLAGFSEIKENFIE-ENAVMVLL 323 (561)
Q Consensus 248 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~--~~~~~~~~A~~aL~nLs~~~~~r~~i~~-~g~v~~Lv 323 (561)
++-.+.-|..+|.++....+.|..+-. ...-..+++++++ |....+...+-.+|.|+..++..+.+-. -..+.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344678899999999998887765544 3355678888876 4567889999999999988876643321 24566677
Q ss_pred HHhhcCC-HHHHHHHHHHHHHhcCCCh-HHHHHHHHhCcHHHHHHhhhc-C-CCHHHHH-------HHHHHHHHhhcCh-
Q 008560 324 GLVASGT-ALAQENVFGCLCNLVSDDE-SLKLLIVREGGIGSLKSYWDS-V-SAVKSLE-------VAVELLSQLASCL- 391 (561)
Q Consensus 324 ~lL~~~~-~~~~~~a~~~L~~L~~~~~-~~r~~~~~~g~i~~Lv~lL~~-~-~~~~~~e-------~a~~aL~~L~~~~- 391 (561)
++..... +.+-..+++++.|++...+ ..-....-.|-+.+-++.|.. . ++.+.+. .-..-=..||.++
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 7776443 3577788999999987432 222233334444455555533 2 2222111 1111111122221
Q ss_pred -----------------------hhHHHHHhc--chHHHHHHHhcCCCHH-HHHHHHHHHHHHcC-CHHHHHHHHhCCCh
Q 008560 392 -----------------------PIAEVLVSD--GFVVRLVNVLNCGVLS-VRIAAARAVSMLGI-NSKARKEMGECGCI 444 (561)
Q Consensus 392 -----------------------~~~~~l~~~--~~i~~Lv~lL~~~~~~-~~~~A~~aL~~L~~-~~~~~~~i~~~g~i 444 (561)
.+.+.+.+. ..+..|.++++..++. .-..|+.=+..+.. .||....+.+.|+=
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 244555554 4588888999876554 23345556666665 68999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 445 GPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 445 ~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
..++.++..++++++-.|..++..+..
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 999999999999999999999877654
No 114
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.74 E-value=0.039 Score=49.27 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=97.1
Q ss_pred HHHHHHhCcHHHHHHhhhcCCC-----HHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHH
Q 008560 352 KLLIVREGGIGSLKSYWDSVSA-----VKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCG--VLSVRIAAARA 424 (561)
Q Consensus 352 r~~~~~~g~i~~Lv~lL~~~~~-----~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~~~~A~~a 424 (561)
-.++++.+|+..|+++++++.. ......++.++..|-.+...-=...+..+|..++.++... +..+.+.|..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3568889999999999998763 3666778888888876533222344567899999988754 46889999999
Q ss_pred HHHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc--ccchhhH
Q 008560 425 VSMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY--AGNRKIL 479 (561)
Q Consensus 425 L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~--~~~~~~~ 479 (561)
|-++..+ +.....+.++=-++.|+..++..++++|.+|..++-.|... +..|+++
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999985 45466666666699999999999999999999888888743 3334444
No 115
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.63 E-value=0.29 Score=46.51 Aligned_cols=148 Identities=17% Similarity=0.094 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHH
Q 008560 252 KERACVALQALSFSKENARAIGSRGGISSLLEICQAG-----TPGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLG 324 (561)
Q Consensus 252 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~ 324 (561)
..+|...|+.++++++.+..+.....--.|-..+... ....+-.+++++..|...+ ++-..+...++||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4577888889999999999998876544555555433 2346789999999998765 66777789999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCChH---HHHHHHHhC----cHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHH
Q 008560 325 LVASGTALAQENVFGCLCNLVSDDES---LKLLIVREG----GIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVL 397 (561)
Q Consensus 325 lL~~~~~~~~~~a~~~L~~L~~~~~~---~r~~~~~~g----~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l 397 (561)
.+..|++..+..|..++..+-.+|.+ +++..-+.- .+..++..+.+..+.+...++++...+|+.++..+..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999887753 233332322 34444544555566789999999999999999888777
Q ss_pred Hh
Q 008560 398 VS 399 (561)
Q Consensus 398 ~~ 399 (561)
..
T Consensus 256 ~~ 257 (293)
T KOG3036|consen 256 RS 257 (293)
T ss_pred Hh
Confidence 54
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.59 E-value=0.5 Score=53.07 Aligned_cols=309 Identities=16% Similarity=0.117 Sum_probs=187.4
Q ss_pred HHHHHhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008560 146 EAVRAESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 146 ~~~~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~ 224 (561)
+.+....+..+..+-. ..+..|..+...+..+++--+. .....+.++.+..+.......+++.|...+..+...-.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 5566677777777754 4566676677777666653322 45667899999999988878899999988887764311
Q ss_pred chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 225 SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
... +.+.+..+.++...+.++..++...+.....|...-+. ......-+++...++++.....+...+.-...++
T Consensus 309 ~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 309 DDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred Cch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 111 21222688899999999999999888887777543111 1122223666667777665566655555555554
Q ss_pred CCc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc---CCCHHHHHH
Q 008560 305 GFS--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS---VSAVKSLEV 379 (561)
Q Consensus 305 ~~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~---~~~~~~~e~ 379 (561)
... +.+..+.....++.+-.+..+....++...+....++.---+ ....++.+..++.. +..+.++..
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~llp~~~~~l~de~~~V~ln 456 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-------KERTISELLPLLIGNLKDEDPIVRLN 456 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-------cCcCccccChhhhhhcchhhHHHHHh
Confidence 432 445566666678888888888888888777776666643221 33444444444332 122345544
Q ss_pred HHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHH
Q 008560 380 AVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEE 458 (561)
Q Consensus 380 a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 458 (561)
....+..+-. .+...........++.++.+-...+..++.+....+..++.... ..+.+....+.+...+.+....+
T Consensus 457 li~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~I 534 (759)
T KOG0211|consen 457 LIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSI 534 (759)
T ss_pred hHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHH
Confidence 4443333322 22222333344556777776666667888888888887775322 12222222333333444556678
Q ss_pred HHHHHHHHHHhhc
Q 008560 459 KESAAKALSTLML 471 (561)
Q Consensus 459 ~~~A~~aL~~L~~ 471 (561)
++.|+.-|..++.
T Consensus 535 r~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 535 REAAARNLPALVE 547 (759)
T ss_pred HHHHHHHhHHHHH
Confidence 8888888887774
No 117
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.51 E-value=0.14 Score=55.55 Aligned_cols=290 Identities=15% Similarity=0.108 Sum_probs=168.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcc--CchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQE--DDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~--~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
+...+.+|++.++..|.+|++.+..++.- .-.--+.+...|.| |..-|....|++.-..+.++..+...-..-+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 34456677888888999998887776541 10011223333443 566777888888877777777665332111110
Q ss_pred -HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-c---hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 230 -IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-E---NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 230 -~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
--.+ .+|.|.-+|++...+++++....+..++... + .++-+. .--.|+++|+......+.+|..++..++
T Consensus 879 pPi~d--llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 879 PPIKD--LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CChhh--hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 1245 8999999999999999999999999998753 3 233222 1235777888878888888888888776
Q ss_pred CCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 305 GFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 305 ~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
.. +--..++..|++-|+..+-..+....-++.-.+.... -..++|.|+.=-+.+. ..+|.-.++++
T Consensus 954 ka------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~-------pFtVLPalmneYrtPe-~nVQnGVLkal 1019 (1172)
T KOG0213|consen 954 KA------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG-------PFTVLPALMNEYRTPE-ANVQNGVLKAL 1019 (1172)
T ss_pred Hh------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC-------chhhhHHHHhhccCch-hHHHHhHHHHH
Confidence 32 1122334444444433322222211111111111000 0123444443333322 36777777777
Q ss_pred HHhhc--ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-------CCC
Q 008560 385 SQLAS--CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-------GKA 455 (561)
Q Consensus 385 ~~L~~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-------~~~ 455 (561)
+.+-. ...+++.+. .+.|.|-..|.+.+..-++.|..++.+++-+.. -.|+...++.||. ..+
T Consensus 1020 sf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC------CcCcHHHHHHHHHHhhhhhcCCC
Confidence 77654 333333332 245556668888888889999999999986421 1344444444443 357
Q ss_pred HHHHHHHHHHHHHhh
Q 008560 456 VEEKESAAKALSTLM 470 (561)
Q Consensus 456 ~~v~~~A~~aL~~L~ 470 (561)
|.++..-.+++-.+.
T Consensus 1092 Phviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLR 1106 (1172)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777776666665554
No 118
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.48 E-value=1.5 Score=46.59 Aligned_cols=314 Identities=12% Similarity=0.088 Sum_probs=178.4
Q ss_pred HHHHhHHHH-HHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCc
Q 008560 147 AVRAESRNL-ITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS-LEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 147 ~~~~~v~~L-v~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~~~~ 224 (561)
..+.+|..+ ++.|.+..+.....|...+..++.-.-.+-. =.|....+++....+. ..++.+++.++.+.+.++.
T Consensus 90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~---wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~ 166 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSL---WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA 166 (858)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcccc---chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC
Confidence 334444443 3455666665555666655555431100000 0233444444443333 4677889999999987765
Q ss_pred chHHHHHhchhhHHHHHH-HHhcC-CHHHHHHHHHHHHH-hcCCCchHHHHHhcC-CHHHHHHHHhcCChHHHHHHHHHH
Q 008560 225 SKHVLIAEGLLLLNHLIR-VLESG-SGFAKERACVALQA-LSFSKENARAIGSRG-GISSLLEICQAGTPGSQAFAAGVL 300 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~-lL~~~-~~~~~~~aa~~L~~-Ls~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~A~~aL 300 (561)
-...+...+ ..+-.++. .++++ +..+|..|..+|.. +-...+|-..-.+.+ .+...++.-+..+.+.+..|.++|
T Consensus 167 Pe~li~~sN-~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 167 PEDLIQMSN-VILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHHHhh-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 533333333 13333433 44444 66788888888876 433222111111111 234445556667888899999999
Q ss_pred HHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHH----------------HHhCcHHH
Q 008560 301 RNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLI----------------VREGGIGS 363 (561)
Q Consensus 301 ~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~----------------~~~g~i~~ 363 (561)
..+-.-. +.-....|.-........+.+.++++...+.+.-.-+|...-+.--.. .-..++|.
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 8876533 333344454444556667788888888888887766665332111000 11236899
Q ss_pred HHHhhhc-C-----CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHH----HhcCCCHHHHHHHHHHHHHHcCC--
Q 008560 364 LKSYWDS-V-----SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVN----VLNCGVLSVRIAAARAVSMLGIN-- 431 (561)
Q Consensus 364 Lv~lL~~-~-----~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~----lL~~~~~~~~~~A~~aL~~L~~~-- 431 (561)
|+++|.. + ++-.....|...|-.++. +.....+.++.. -+++.+..-++.|+.++..+...
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq-------~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ-------LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHH-------HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc
Confidence 9999965 1 111233333333333332 111222333333 45677788899999999999873
Q ss_pred HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 432 SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
..+...++ ..++|.+..++.+..--++..+++++..++.+
T Consensus 399 ~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 399 EDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 34444443 34688888888877778899999999888754
No 119
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.41 E-value=0.04 Score=51.32 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHH---------------HhCcHHHHHHhhhc-----CCCHHHHHHHHHHHHHhh
Q 008560 329 GTALAQENVFGCLCNLVSDDESLKLLIV---------------REGGIGSLKSYWDS-----VSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 329 ~~~~~~~~a~~~L~~L~~~~~~~r~~~~---------------~~g~i~~Lv~lL~~-----~~~~~~~e~a~~aL~~L~ 388 (561)
........+++.|.|++..+...+..+- +...+..|+..+.. .+...-......++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3445667889999999997764442221 12357888888765 223456788999999999
Q ss_pred cChhhHHHHHhc--ch--HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhC
Q 008560 389 SCLPIAEVLVSD--GF--VVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGEC 441 (561)
Q Consensus 389 ~~~~~~~~l~~~--~~--i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~ 441 (561)
+.+++|+.+.+. +. +..|+.++.+.+..-+.-++.++.|+|.+.+....+...
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 999999999985 44 788888888887777888999999999987766666653
No 120
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.15 Score=55.27 Aligned_cols=215 Identities=16% Similarity=0.139 Sum_probs=147.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC-chhhHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF-SEIKENF 313 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~-~~~r~~i 313 (561)
.-+-++-+|.+.-+.+|..|..+|..+..- ++.- ...+|.|++-|.+.+|.++.+|..+++.|+.- +.+.-.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 445567788888999999999999988654 3321 13689999999999999999999999999974 354433
Q ss_pred HhhhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh--c-
Q 008560 314 IEENAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA--S- 389 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~--~- 389 (561)
.-|.|.+++...+. =+...-+....+|+--.+.... ..+++|..++++.....+...|+..+-... .
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 35778888864433 3566677778888877765433 467888888887554445555554443322 1
Q ss_pred ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 008560 390 CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALST 468 (561)
Q Consensus 390 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~ 468 (561)
.+..-..+ .-+++.|-.++.+.++.++.-...++..+.. ++....+- -...++.|.+.++.+|..|..+|..
T Consensus 290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 11111111 1246777777888888888888888888885 44433322 2456777888888899999998888
Q ss_pred hhcc
Q 008560 469 LMLY 472 (561)
Q Consensus 469 L~~~ 472 (561)
+...
T Consensus 363 mVsk 366 (877)
T KOG1059|consen 363 MVSK 366 (877)
T ss_pred Hhhh
Confidence 7753
No 121
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.31 E-value=0.21 Score=53.29 Aligned_cols=289 Identities=11% Similarity=0.069 Sum_probs=167.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQ---EDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~---~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
.|...+.+|++..+..|.+|++....++. ..-+ .+.+...|.| |.+-|....|++.-..+.+++.+-..-..+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 45667888888888999998887766653 1111 1223334433 5556667778888888888877765433221
Q ss_pred H-HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-c---hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 228 V-LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-E---NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 228 ~-i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
. ---.| .+|.|.-+|++...++..+....+..++.+. + .++-+. .--.|++.|.+-+.+.+.+|..++..
T Consensus 682 mqpPi~~--ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 682 MQPPISG--ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred cCCchhh--ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 1 11256 8999999999999999999999999998864 2 232222 22357788888888899999888887
Q ss_pred hhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHh-C---cHHHHHHhhhcCCCHHHHH
Q 008560 303 LAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVRE-G---GIGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 303 Ls~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~-g---~i~~Lv~lL~~~~~~~~~e 378 (561)
++.. +.-..++..|++-|+..+-..+....-++.- +.+. | ++|.|+.=-.++. ..+|.
T Consensus 757 Is~a------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~i-----------Vae~cgpfsVlP~lm~dY~TPe-~nVQn 818 (975)
T COG5181 757 ISRA------IGPQDVLDILLNNLKVQERQQRVCTSVAISI-----------VAEYCGPFSVLPTLMSDYETPE-ANVQN 818 (975)
T ss_pred HHhh------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhh-----------hHhhcCchhhHHHHHhcccCch-hHHHH
Confidence 7632 2122344444444443332222221111111 1111 1 3333333222222 35676
Q ss_pred HHHHHHHHhhc--ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc----
Q 008560 379 VAVELLSQLAS--CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD---- 452 (561)
Q Consensus 379 ~a~~aL~~L~~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~---- 452 (561)
-.+++++.+-. ....++.+. ...|.|-..|.+.++.-++.|...+.+|+-+.. ..+...+.-+|+.++.
T Consensus 819 GvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~---gtg~eda~IHLlNllwpNIl 893 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP---GTGDEDAAIHLLNLLWPNIL 893 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHhhhhcc
Confidence 66776666553 222222221 233444458888888889999999999986411 0111122345555554
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 008560 453 GKAVEEKESAAKALSTLM 470 (561)
Q Consensus 453 ~~~~~v~~~A~~aL~~L~ 470 (561)
..+|.++..-.+.+-.++
T Consensus 894 e~sPhvi~~~~Eg~e~~~ 911 (975)
T COG5181 894 EPSPHVIQSFDEGMESFA 911 (975)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 456777666555554444
No 122
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.30 E-value=0.33 Score=46.89 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHHHhcC-CcchHHHH-HhchhhHHHHHHHH-------hcC--CH---HHHHHHHHHHHHhcCCCchHH
Q 008560 205 SLEMKEKTVASIARVSMV-DSSKHVLI-AEGLLLLNHLIRVL-------ESG--SG---FAKERACVALQALSFSKENAR 270 (561)
Q Consensus 205 ~~~~~e~a~~~L~~La~~-~~~~~~i~-~~g~~~i~~Lv~lL-------~~~--~~---~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
+++.+|.|+.-|..--.. ++-.-.+= ..| .+..|++=+ ..+ +. .-..+|...|+.++.+++.+.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G--~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFG--TIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTT--HHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCC--hHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 577888887766554322 22222222 256 666655422 222 12 334467777888899999999
Q ss_pred HHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008560 271 AIGSRGGISSLLEICQAGT-----PGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCN 343 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~-----~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 343 (561)
.+.+....--|.-.+...+ ...+-.+++++..|...+ +.-..+.+...+|..++.++.|++-.+..|.-++..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999877666666665432 345688999999998754 677778899999999999999999999999999999
Q ss_pred hcCCChHHH-------HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 008560 344 LVSDDESLK-------LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS 399 (561)
Q Consensus 344 L~~~~~~~r-------~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~ 399 (561)
+-.++.+.. +...-..++..++..+....+++.....+++-..|+.++..++.+.+
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 988775432 11111234556666566666778999999999999998888877754
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.25 E-value=0.012 Score=42.75 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008560 206 LEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQAL 262 (561)
Q Consensus 206 ~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L 262 (561)
+.+|+.|+.+|.+++........-.... +++.|+.+|++.+..+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~--~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE--LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH--HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999876544333334456 899999999999999999999999875
No 124
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.22 E-value=0.025 Score=46.62 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHh--cCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhC
Q 008560 377 LEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVL--NCGVLSVRIAAARAVSMLGI-NSKARKEMGEC 441 (561)
Q Consensus 377 ~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL--~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~ 441 (561)
+...+++|+|||. ++..++.+.+.|+++.++... +..++-++|.|..++.+||. ++++++.+.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4568899999996 999999999999999999854 56689999999999999998 68888877653
No 125
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.21 E-value=0.017 Score=41.95 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008560 290 PGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNL 344 (561)
Q Consensus 290 ~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 344 (561)
+..+..|+.+|.+++........-....+++.|+.+|.+++..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3568899999999887765544446678999999999999999999999999875
No 126
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.21 Score=54.93 Aligned_cols=216 Identities=15% Similarity=0.102 Sum_probs=146.2
Q ss_pred hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-HHhcCCcchHHHHHhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 008560 185 VVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIA-RVSMVDSSKHVLIAEGLLLLNHLIRVLESGS-GFAKERACVALQAL 262 (561)
Q Consensus 185 ~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~-~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~L 262 (561)
+...++.|+...|+++.....+...-+...+|. .+... ..+ ... +++++...+.+.. .--...+..++.||
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~--v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYE--VVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhh--hhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 344567899999999998888777777777776 22211 111 112 5555555554431 22234677788888
Q ss_pred cCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh-hHHHHh-hhhHHHHHHHhhcCCHHHHHHHHH
Q 008560 263 SFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI-KENFIE-ENAVMVLLGLVASGTALAQENVFG 339 (561)
Q Consensus 263 s~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~-r~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~ 339 (561)
+..+ ..+..|..+-+++.+-+.+...++..+..++..+.||..++.. -+.+++ ...++.....+....+.....+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~ 649 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAG 649 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccc
Confidence 8764 4666788776777777778888999999999999999998844 445555 456666666676666677888888
Q ss_pred HHHHhcCCChHHHH-HHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHH
Q 008560 340 CLCNLVSDDESLKL-LIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVN 408 (561)
Q Consensus 340 ~L~~L~~~~~~~r~-~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~ 408 (561)
++..|+..+++.+. ...-..+.+.++.++.++.+ +++...+..+.|+.. ..+..+.+.+...++.+..
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~-~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDD-EIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchh-hhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 88888887776666 44445677888888887665 788888888888654 4455555555544444433
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.11 E-value=0.95 Score=45.74 Aligned_cols=194 Identities=18% Similarity=0.180 Sum_probs=116.3
Q ss_pred HHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-
Q 008560 146 EAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVA--QGVVPVLVKLMDSSSLEMKEKTVASIARVSMV- 222 (561)
Q Consensus 146 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~- 222 (561)
+.....+.+.+..+...+...|..++..+...+...... ..+.+ ...+..+.+.++.+..+-+..|+.++..++..
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 344455778888888777889999999999998765322 22222 35677777888887766666777777777654
Q ss_pred --CcchHHHHHhchhhHHHHHHHHhcCC--HHHHHHHHHHHHHhcCC---C-chHHHHHhcCCHHHHHH--HHh-cC---
Q 008560 223 --DSSKHVLIAEGLLLLNHLIRVLESGS--GFAKERACVALQALSFS---K-ENARAIGSRGGISSLLE--ICQ-AG--- 288 (561)
Q Consensus 223 --~~~~~~i~~~g~~~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~---~-~~~~~i~~~g~i~~Lv~--ll~-~~--- 288 (561)
.+....+.+ . ..+.|.+++..++ ...|..++.+|.-++.. + +......+ .++.+.. ..+ ++
T Consensus 118 g~g~~~~ei~~-~--~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 118 GAGEDSEEIFE-E--LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAP 192 (309)
T ss_pred CCCccHHHHHH-H--HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcc
Confidence 233344444 4 6888999998764 55666666666655432 1 11110001 1221111 111 11
Q ss_pred ------ChHHHHHHHHHHHHhhC-CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 289 ------TPGSQAFAAGVLRNLAG-FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 289 ------~~~~~~~A~~aL~nLs~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
++....+|+.+-.-|.. .+...-.-.-...++.|..+|.+.+.++|..|..+|.-|-
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23345555544444432 3332222222457999999999999999999998887663
No 128
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.09 E-value=0.66 Score=44.17 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCc--chHHHHHhchhhHHH
Q 008560 167 KNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS-----SLEMKEKTVASIARVSMVDS--SKHVLIAEGLLLLNH 239 (561)
Q Consensus 167 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~e~a~~~L~~La~~~~--~~~~i~~~g~~~i~~ 239 (561)
...|+.-+..+ ..+++.+..+.++-.=-.|-.+|... ..-.|-.+++++..|...++ .-..+...+ +++.
T Consensus 96 VcnaL~LlQcv-ASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te--IVPl 172 (293)
T KOG3036|consen 96 VCNALALLQCV-ASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE--IVPL 172 (293)
T ss_pred HHHHHHHHHHH-hcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh--hHHH
Confidence 34566544444 45566788777776555566666543 25678889999999987654 345666788 9999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh-cC-------CHHHHHH-HHhcCChHHHHHHHHHHHHhhCCchhh
Q 008560 240 LIRVLESGSGFAKERACVALQALSFSKENARAIGS-RG-------GISSLLE-ICQAGTPGSQAFAAGVLRNLAGFSEIK 310 (561)
Q Consensus 240 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g-------~i~~Lv~-ll~~~~~~~~~~A~~aL~nLs~~~~~r 310 (561)
.++.++.|+...+..|+-++..+-.++..-.-++. .. .+..++. +.+.+++...+.+.++..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999888765444433 11 1222332 334567888899999999999998877
Q ss_pred HHHH
Q 008560 311 ENFI 314 (561)
Q Consensus 311 ~~i~ 314 (561)
..+.
T Consensus 253 ~aL~ 256 (293)
T KOG3036|consen 253 AALR 256 (293)
T ss_pred HHHH
Confidence 7663
No 129
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=1.3 Score=48.72 Aligned_cols=317 Identities=20% Similarity=0.171 Sum_probs=156.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCcchHHHHH
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKL-MDSSSLEMKEKTVASIARVSMVDSSKHVLIA 231 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~~~e~a~~~L~~La~~~~~~~~i~~ 231 (561)
.++.+.|.+++.+.|.+|++.+..+....++.-. .+-.++++ |-+.+.+++.--.-.+-.+...+. ...+..
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~-dgkl~~ 95 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKKLLYYYWELVPKTDS-DGKLLH 95 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHHHHHHHHHHccccCC-CcccHH
Confidence 3466788999999999999998877765554322 22223332 233343443322222222222221 111222
Q ss_pred hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhH
Q 008560 232 EGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKE 311 (561)
Q Consensus 232 ~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~ 311 (561)
+-..+...+-+=|++++..+|-...+.|+.|-+. + +. ...+|.+..-+.+..+-++++|.-+++.+=... .
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~-E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~ 166 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEP-E----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---E 166 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhcCcH-H----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---h
Confidence 2111334444557788888888888887776332 1 11 123455555566777788888877776553321 0
Q ss_pred HHHhhhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC--CCHHHHHHHHHHHHHhh
Q 008560 312 NFIEENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV--SAVKSLEVAVELLSQLA 388 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~--~~~~~~e~a~~aL~~L~ 388 (561)
.++ ..+-..+-+.| ...++..+.+|..-|... ++ +.++.-|...++.- -+...+-..+..|...|
T Consensus 167 ~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~--------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 167 HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DP--------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhc---CH--------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 111 01111112222 233334455544433332 11 11222222222221 11356666777777777
Q ss_pred c-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHH
Q 008560 389 S-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKAL 466 (561)
Q Consensus 389 ~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL 466 (561)
. .|+- ...++..+..+|.+.++.+.-.|+..|.+++.++...+... ..++.++. ..+..++.-...-|
T Consensus 235 ~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 235 LANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAA-----STYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred hcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHH-----HHHHHHHHhccCcchhhhhHHHH
Confidence 5 3332 23467888888888788888888888888887766555542 33444443 22333333333333
Q ss_pred HHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 467 STLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 467 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
..+. ..+.+.+ ++ -+.-++..|++.+- ..++.++.+.+.|+
T Consensus 305 ~~l~--~~~~~il-~~--l~mDvLrvLss~dl-dvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 305 SELK--ALHEKIL-QG--LIMDVLRVLSSPDL-DVRSKTLDIALDLV 345 (948)
T ss_pred HHHh--hhhHHHH-HH--HHHHHHHHcCcccc-cHHHHHHHHHHhhh
Confidence 3333 2222222 22 34445555555432 22333555544443
No 130
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.06 E-value=1.8 Score=49.07 Aligned_cols=242 Identities=19% Similarity=0.204 Sum_probs=144.6
Q ss_pred HHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHh----cCC----HHHHH
Q 008560 187 IAVAQGVVPVLVKLMDSS-----SLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLE----SGS----GFAKE 253 (561)
Q Consensus 187 ~i~~~g~v~~Lv~lL~~~-----~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~----~~~----~~~~~ 253 (561)
.+.+.||+..++.++.+- ........+..|...+.-..+|..+++.| +++.|+..|. .+. ..+-+
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~--al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELN--ALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcC--CHHHHHHHHHHHHhCccccccchHHH
Confidence 345689999999998763 24455666777777777889999999999 9999998875 333 56666
Q ss_pred HHHHHHHHhcCCCch--H-H--HHHh-cC----C---HHHHHHHHhcC----ChHHHHHHHHHHHHhhCCchhhHHHHhh
Q 008560 254 RACVALQALSFSKEN--A-R--AIGS-RG----G---ISSLLEICQAG----TPGSQAFAAGVLRNLAGFSEIKENFIEE 316 (561)
Q Consensus 254 ~aa~~L~~Ls~~~~~--~-~--~i~~-~g----~---i~~Lv~ll~~~----~~~~~~~A~~aL~nLs~~~~~r~~i~~~ 316 (561)
.-..++..|...... . . .... .| . +..|++.+.+. ++.....-+++|-+|+.+++......=.
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 666666666443211 1 0 1011 11 2 55666665543 5677788899999999887554443211
Q ss_pred hhHHHHHHHhhc---CCHHHHHHHHHHHHHhcCC------ChHHHHHHHHhCcHHHHHHhhhcCC-------CH------
Q 008560 317 NAVMVLLGLVAS---GTALAQENVFGCLCNLVSD------DESLKLLIVREGGIGSLKSYWDSVS-------AV------ 374 (561)
Q Consensus 317 g~v~~Lv~lL~~---~~~~~~~~a~~~L~~L~~~------~~~~r~~~~~~g~i~~Lv~lL~~~~-------~~------ 374 (561)
-. ...+++=.- ...+- ...+.+++.++.+ ...+|..+++.|+++..+.+|.... ++
T Consensus 270 ~F-~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 270 HF-KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HH-HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 11 222222111 11111 2336666666542 2468999999999999999986521 11
Q ss_pred --HHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCC--HHHHHHHHHHHHHHcCCHH
Q 008560 375 --KSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGV--LSVRIAAARAVSMLGINSK 433 (561)
Q Consensus 375 --~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~~~~ 433 (561)
.....++..|.-||......+.+...+++ ++++.|...+ ..+=.-|-.+|-.|+.+++
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 23446888888888743433444555666 5666664332 2333334444444444443
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.01 E-value=0.042 Score=45.28 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHHHHHHHHHHhhc-ChhhHHHHHh
Q 008560 333 AQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLEVAVELLSQLAS-CLPIAEVLVS 399 (561)
Q Consensus 333 ~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~ 399 (561)
.+...+.+|.|++..++.++..+.+.|+++.++....- +..|-.+|.|+.+|+||+. ++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35567889999999999999999999999999987643 4567999999999999996 8888766654
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.97 E-value=1.1 Score=50.11 Aligned_cols=169 Identities=16% Similarity=0.188 Sum_probs=99.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHH
Q 008560 159 LQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLN 238 (561)
Q Consensus 159 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~ 238 (561)
+.+++...|.+|++.+..-+..++..- -..+-+++...+.|.+++.-.---|...+........ .+++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l------LavN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL------LAVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH------HHHH
Confidence 455556667777777665554433211 1234445555555666665555555555543321111 1566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhh
Q 008560 239 HLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENA 318 (561)
Q Consensus 239 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~ 318 (561)
.+.+=+++.++.+|..|.+.+..+-.. .+.. ..++++.+++.++++.+++.|+-++.++=..+ +....+.|.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~-----el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~ 167 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVK-----ELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGL 167 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChH-----HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccH
Confidence 666666777777777777776655222 1111 24667777777777777777777777764322 223345667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 008560 319 VMVLLGLVASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 347 (561)
+..+..++.+.++.+..+|..+|..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77777777777777777777777777554
No 133
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.96 E-value=0.054 Score=50.46 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHhch--------------hhHHHHHHHHhcC------CHHHHHHHHHHHHHhcCC
Q 008560 206 LEMKEKTVASIARVSMVDSSKHVLIAEGL--------------LLLNHLIRVLESG------SGFAKERACVALQALSFS 265 (561)
Q Consensus 206 ~~~~e~a~~~L~~La~~~~~~~~i~~~g~--------------~~i~~Lv~lL~~~------~~~~~~~aa~~L~~Ls~~ 265 (561)
....+.++..|.||+..++....+...+. ..+..|+..+..| ...-..+.+.++.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34567788889999888776665554221 2678888888763 234567899999999999
Q ss_pred CchHHHHHh--cCC--HHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhh---hhHHHHHHHhh
Q 008560 266 KENARAIGS--RGG--ISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEE---NAVMVLLGLVA 327 (561)
Q Consensus 266 ~~~~~~i~~--~g~--i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~---g~v~~Lv~lL~ 327 (561)
++.|..+.. .+. +..|+....+.+..-+.-++++|+|+|.+.+....+... ++++.|+--|.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999998887 344 777888888888888899999999999999887877753 45555444444
No 134
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.89 E-value=0.8 Score=50.08 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=156.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch---HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hH
Q 008560 194 VPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK---HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE-NA 269 (561)
Q Consensus 194 v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~---~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~ 269 (561)
+...+..|.+..+.++.+|+..+..++.--..+ +.+...| . .|...|....+++--....++..+..... .+
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--v--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--V--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--H--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 334455678888999999999998887432222 2333344 2 24556666678877777777777655432 11
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc----hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS----EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~----~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
..=-..+.+|.|.-+|++....+++++...+..++... ..|+.| .+--.|+++|.+...+++.+|...+..|+
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11112467899999999999999999999999988644 345555 34456788888888889998888888775
Q ss_pred CCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH--HHHhhcChhhHHHHHh-cchHHHHHHHhcCCCHHHHHHHH
Q 008560 346 SDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL--LSQLASCLPIAEVLVS-DGFVVRLVNVLNCGVLSVRIAAA 422 (561)
Q Consensus 346 ~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a--L~~L~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~A~ 422 (561)
.. +.-+.++..|++-|+. .+-+...+.. |.-.+. .+. ..++|.|+.=-+..+..+|.-..
T Consensus 954 ka-------IGPqdVLatLlnnLkv---qeRq~RvcTtvaIaIVaE-------~c~pFtVLPalmneYrtPe~nVQnGVL 1016 (1172)
T KOG0213|consen 954 KA-------IGPQDVLATLLNNLKV---QERQNRVCTTVAIAIVAE-------TCGPFTVLPALMNEYRTPEANVQNGVL 1016 (1172)
T ss_pred Hh-------cCHHHHHHHHHhcchH---HHHHhchhhhhhhhhhhh-------hcCchhhhHHHHhhccCchhHHHHhHH
Confidence 42 1112233333333322 1111111111 111111 001 13567777666677778888777
Q ss_pred HHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcccc
Q 008560 423 RAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 423 ~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
++++.+-. .+-.++.+. -..|.|-..|.+.+..-|.-|..++..|+....
T Consensus 1017 kalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 77776653 122222221 235666666777788889999999999987643
No 135
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.87 E-value=0.78 Score=49.12 Aligned_cols=254 Identities=12% Similarity=0.083 Sum_probs=155.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc---hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS---KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~---~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
.|...+.+|+++.|.+++.|+.....|+.--.+ -+.+...| ..|..-|....+++--....+++.+.....-+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg----~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG----NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh----HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 345556788999999999999988887642111 12222233 12344455567787777777777776654322
Q ss_pred H-HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc----hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008560 270 R-AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS----EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNL 344 (561)
Q Consensus 270 ~-~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~----~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 344 (561)
. .--..|.+|.|.-+|++....++.+....+..+|... ..|+.| .+--.|++.|.+.+.+++.+|...+..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 1 1112578999999999998888888888888887654 346665 3445678889888889999998888877
Q ss_pred cCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHH-----HHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHH
Q 008560 345 VSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVA-----VELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRI 419 (561)
Q Consensus 345 ~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a-----~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 419 (561)
+.. +.-+.++..|+.-|+. .+-+... +.+.+..|. -..++|.|+.=-...+..+|.
T Consensus 758 s~a-------iGPqdvL~~LlnnLkv---qeRq~RvctsvaI~iVae~cg---------pfsVlP~lm~dY~TPe~nVQn 818 (975)
T COG5181 758 SRA-------IGPQDVLDILLNNLKV---QERQQRVCTSVAISIVAEYCG---------PFSVLPTLMSDYETPEANVQN 818 (975)
T ss_pred Hhh-------cCHHHHHHHHHhcchH---HHHHhhhhhhhhhhhhHhhcC---------chhhHHHHHhcccCchhHHHH
Confidence 542 1112233333333322 1112111 222222221 013566666655666777787
Q ss_pred HHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcccc
Q 008560 420 AAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 420 ~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
-..++++.+-.. ...++.+ .-..|.|-..+.+.++.-|.-|...+..|+.+.+
T Consensus 819 GvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 777777666531 2222222 1235666666777888889999999999987644
No 136
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.52 E-value=2.5 Score=44.11 Aligned_cols=226 Identities=16% Similarity=0.161 Sum_probs=138.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCc---hhhHHHHhcCChHHHHHhhcCCC-----H--HHHHHHHHHHHHHhcC
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDD---KNVVIAVAQGVVPVLVKLMDSSS-----L--EMKEKTVASIARVSMV 222 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~g~v~~Lv~lL~~~~-----~--~~~e~a~~~L~~La~~ 222 (561)
.++...++..+.+.|..|+--...+++.+| .+++.+.++=|.+.+-++|.+++ | ..+.-++.+|..++.+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 346666677777889999988888888765 57788999988999999997653 2 2445667788888877
Q ss_pred Ccc--hHHHHHhchhhHHHHHHHHhcC-CHH------HHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc-CChHH
Q 008560 223 DSS--KHVLIAEGLLLLNHLIRVLESG-SGF------AKERACVALQALSFSKENARAIGSRGGISSLLEICQA-GTPGS 292 (561)
Q Consensus 223 ~~~--~~~i~~~g~~~i~~Lv~lL~~~-~~~------~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~ 292 (561)
++- .+.++ + .||.|..++..+ +++ +.+.+-.+|..++..+.....+.+.|+++.+..+-.- +....
T Consensus 94 pElAsh~~~v--~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 PELASHEEMV--S--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred hhhccCHHHH--H--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchh
Confidence 653 23333 3 688899999875 322 5667888899998888888899999999999865432 22333
Q ss_pred HHHHHHHHHHhhC----CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh------HHH----HHHHHh
Q 008560 293 QAFAAGVLRNLAG----FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE------SLK----LLIVRE 358 (561)
Q Consensus 293 ~~~A~~aL~nLs~----~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~------~~r----~~~~~~ 358 (561)
...++.++.-+.. .++.-..+.+ .+..+..=+...+...+...+..|..+-+... ..+ ..-.+.
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~ 247 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRT 247 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHH
Confidence 4445555443332 1221112211 12222222334455677777777775544321 112 111223
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
| ++.+|++.-.+..+.+|+....++.
T Consensus 248 G----~~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 248 G----VVAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred H----HHHHHhcccCchhcChHHHHHHHHH
Confidence 3 3445554333455666666666654
No 137
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=5.2 Score=44.15 Aligned_cols=364 Identities=12% Similarity=0.097 Sum_probs=184.1
Q ss_pred HHHHHHhhhHhhhcccC---CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhc
Q 008560 35 IVKTKLNDLETQLKDFS---DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVR 111 (561)
Q Consensus 35 ~~~~~~~~l~~~l~~~~---~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~ 111 (561)
.-..|.+.+-..+..+. +.|+++-.=| +.+|.+-.++|.+.+-..=-|.--+-.+||++- .-.=
T Consensus 33 ~~~~KIeamK~ii~~mlnGe~~p~Llm~Ii-Rfvlps~~~elKKLly~ywE~vPKt~~dgkl~~------------EMIL 99 (948)
T KOG1058|consen 33 DDEVKIEAMKKIIALMLNGEDLPSLLMTII-RFVLPSRNHELKKLLYYYWELVPKTDSDGKLLH------------EMIL 99 (948)
T ss_pred ChHHHHHHHHHHHHHHHcCCCchHHHHHHh-heeeccCchHHHHHHHHHHHHccccCCCcccHH------------HHHH
Confidence 34567777777776666 5566555444 777777777777766555444322222355321 1111
Q ss_pred chhHHHhccCCCCCcccccccccccccccCCCchHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008560 112 DGDVLIKSGVLQDGDVLIKSGVLQDGVVSSGSKREAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQ 191 (561)
Q Consensus 112 ~cp~l~t~~~l~~~~~lipN~tLr~li~~~~~~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~ 191 (561)
-|. .-..-|...+++|.--|||-+.... ..+-....++.+.+.|...+.-.|+.|.-++..+-+..+. ++ .
T Consensus 100 vcn--a~RkDLQHPNEyiRG~TLRFLckLk--E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~-p 170 (948)
T KOG1058|consen 100 VCN--AYRKDLQHPNEYIRGSTLRFLCKLK--EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LI-P 170 (948)
T ss_pred HHH--HHhhhccCchHhhcchhhhhhhhcC--cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hc-C
Confidence 232 1112244445666666666665442 2344456677777888888888999988877766443211 11 1
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc---CCHHHHHHHHHHHHHhcCCCc
Q 008560 192 GVVPVLVKLM-DSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES---GSGFAKERACVALQALSFSKE 267 (561)
Q Consensus 192 g~v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~---~~~~~~~~aa~~L~~Ls~~~~ 267 (561)
++=+.+-++| ...++..+.+|...|... +++ . ++.-|.....+ -+...+......+...+....
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~--D~E--------r--Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTT--DPE--------R--ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhc--CHH--------H--HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 2222222333 445666666666555432 111 1 11111111111 123333333444444433211
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcC
Q 008560 268 NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTA-LAQENVFGCLCNLVS 346 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~ 346 (561)
... ...|+.+..+|.+.++.+...|+.+|.+|+.++..-.. +...+++++.+.+. .++.-.+.-|..+..
T Consensus 239 ~~~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 239 AEK----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred HHh----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 111 12366677777777777777777777777766643222 23445555543322 333333344444432
Q ss_pred CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHH-HhcC------CCHHHHH
Q 008560 347 DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVN-VLNC------GVLSVRI 419 (561)
Q Consensus 347 ~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~-lL~~------~~~~~~~ 419 (561)
.++. + -.|.+--.+++|.+++ -+++..++.+...|..+... +.+ +..|-. +.+. .+...++
T Consensus 310 ~~~~----i-l~~l~mDvLrvLss~d-ldvr~Ktldi~ldLvssrNv-edi-----v~~Lkke~~kT~~~e~d~~~~yRq 377 (948)
T KOG1058|consen 310 LHEK----I-LQGLIMDVLRVLSSPD-LDVRSKTLDIALDLVSSRNV-EDI-----VQFLKKEVMKTHNEESDDNGKYRQ 377 (948)
T ss_pred hhHH----H-HHHHHHHHHHHcCccc-ccHHHHHHHHHHhhhhhccH-HHH-----HHHHHHHHHhccccccccchHHHH
Confidence 2211 1 1122333445554433 47888888888887764322 111 111211 1111 1235567
Q ss_pred HHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHH
Q 008560 420 AAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEE 458 (561)
Q Consensus 420 ~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 458 (561)
.-+.++...+. -+++...+ ++.|++.+.+.++..
T Consensus 378 lLiktih~cav~Fp~~aatv-----V~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 378 LLIKTIHACAVKFPEVAATV-----VSLLLDFISDSNEAA 412 (948)
T ss_pred HHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCCHHH
Confidence 77777777765 36655555 788888888766643
No 138
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.46 E-value=0.053 Score=45.95 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=59.5
Q ss_pred cHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 360 GIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 360 ~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
.+..|+++|..+.++.....|+.=|+.+++ .|.++..+-+.|+-..+.++|.+.+++++..|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 578889999776677888999999999997 8999888877799999999999999999999999988764
No 139
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.45 E-value=1.3 Score=45.95 Aligned_cols=240 Identities=20% Similarity=0.146 Sum_probs=135.7
Q ss_pred HHHHhHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhc-CCCH-HHHHHHHHHHHHHhcCC
Q 008560 147 AVRAESRNLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMD-SSSL-EMKEKTVASIARVSMVD 223 (561)
Q Consensus 147 ~~~~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~-~~~e~a~~~L~~La~~~ 223 (561)
.....|..++..|.++ +...|+.++..|...+. ++..+..+...|.+..+++.+. .++. ...-.++.++..++.+.
T Consensus 18 rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~ 96 (361)
T PF07814_consen 18 RFADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG 96 (361)
T ss_pred hHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC
Confidence 3455788899999843 44578888888887776 5678888899999999999884 3332 22223333344444433
Q ss_pred cchHHHHHhchhhHHHHHHHHh-----------------------------------c---------CCHHHHHHHHHHH
Q 008560 224 SSKHVLIAEGLLLLNHLIRVLE-----------------------------------S---------GSGFAKERACVAL 259 (561)
Q Consensus 224 ~~~~~i~~~g~~~i~~Lv~lL~-----------------------------------~---------~~~~~~~~aa~~L 259 (561)
.+-..+.+.+ ...-++++++ . ....-+.-|..++
T Consensus 97 ~~~~l~~~~~--~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 97 LNMHLLLDRD--SLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred cchhhhhchh--HHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 2222222222 3333333333 0 0111223344444
Q ss_pred HHhc---------C---C---CchHHHHHhcCCHHHHHHHHhc----CC-------h-----HHHHHHHHHHHHhhCCc-
Q 008560 260 QALS---------F---S---KENARAIGSRGGISSLLEICQA----GT-------P-----GSQAFAAGVLRNLAGFS- 307 (561)
Q Consensus 260 ~~Ls---------~---~---~~~~~~i~~~g~i~~Lv~ll~~----~~-------~-----~~~~~A~~aL~nLs~~~- 307 (561)
..++ . . +..++.+...||+..+++++.+ .+ + ..-..+..+|-|.+...
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 4442 0 0 1235566667889999998862 11 0 12356778888877654
Q ss_pred hhhHHHHhh--hhHHH-HHHHhh---cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-----------
Q 008560 308 EIKENFIEE--NAVMV-LLGLVA---SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS----------- 370 (561)
Q Consensus 308 ~~r~~i~~~--g~v~~-Lv~lL~---~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~----------- 370 (561)
+++...... +.++. +..++. .........++..+.|++-+++..+..+...+..+.+..+...
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~ 334 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYV 334 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccc
Confidence 666666543 22222 222222 2223457889999999999997777777665443333222211
Q ss_pred --CCCHHHHHHHHHHHHHhhc
Q 008560 371 --VSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 371 --~~~~~~~e~a~~aL~~L~~ 389 (561)
...-+...-++++|-||+.
T Consensus 335 ~~~~~~D~~IL~Lg~LINL~E 355 (361)
T PF07814_consen 335 PEESSFDILILALGLLINLVE 355 (361)
T ss_pred cccccchHHHHHHHhHHHhee
Confidence 1112456677888888875
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=1.7 Score=47.91 Aligned_cols=262 Identities=16% Similarity=0.184 Sum_probs=141.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch--------HHHH-
Q 008560 160 QIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK--------HVLI- 230 (561)
Q Consensus 160 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~--------~~i~- 230 (561)
++.+.....+|+.++..+...+.+ .+ ...+..|-.+++++.+.+|-.|+++|..++...... +.++
T Consensus 255 ~~K~emV~~EaArai~~l~~~~~r---~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt 329 (865)
T KOG1078|consen 255 RHKSEMVIYEAARAIVSLPNTNSR---EL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT 329 (865)
T ss_pred hchhHHHHHHHHHHHhhccccCHh---hc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc
Confidence 344445567788878777554332 22 237888888999999999999999999998642111 1111
Q ss_pred Hhch-hhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 231 AEGL-LLLNHLIRVLESGSGFAKERACVALQALSFS--KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 231 ~~g~-~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
+.+. =+-.++.-+|+.|+......-..-+.+...+ ++.+- ....++..||..-
T Consensus 330 d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKi------------------------vvvdai~sLc~~f 385 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKI------------------------VVVDAIRSLCLKF 385 (865)
T ss_pred ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceE------------------------EeHHHHHHHHhhc
Confidence 1111 0233445566666554444333333333222 12221 1122222222211
Q ss_pred hhhHHHHhhhhHHHHHHHhhc-CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 008560 308 EIKENFIEENAVMVLLGLVAS-GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQ 386 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~ 386 (561)
.-+ ..+.+.-|..+|.. |.-+.+.....++..+...+++. ++.++..|..++.+. +-...+..+|..
T Consensus 386 p~k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-----Ke~~L~~LCefIEDc---e~~~i~~rILhl 453 (865)
T KOG1078|consen 386 PRK----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-----KERGLEHLCEFIEDC---EFTQIAVRILHL 453 (865)
T ss_pred cHH----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHHHhc---cchHHHHHHHHH
Confidence 111 12334445555543 22245555555555555444332 234566666666653 234556666666
Q ss_pred hhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHH
Q 008560 387 LAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEEKESAAK 464 (561)
Q Consensus 387 L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 464 (561)
|-. +|.. ......+..+...+.=.+..++..|+.+|.++... +..+. .+.-.|...+.+.++++|+.|.-
T Consensus 454 LG~EgP~a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 454 LGKEGPKA---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HhccCCCC---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHH
Confidence 553 2211 00124555555555445778899999999999842 22222 22445566667889999999999
Q ss_pred HHHHhh
Q 008560 465 ALSTLM 470 (561)
Q Consensus 465 aL~~L~ 470 (561)
+|.++.
T Consensus 526 ~l~~l~ 531 (865)
T KOG1078|consen 526 YLKNLE 531 (865)
T ss_pred HHHHhh
Confidence 998887
No 141
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.21 E-value=2.9 Score=42.22 Aligned_cols=189 Identities=24% Similarity=0.188 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC---chhhH
Q 008560 237 LNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRNLAGF---SEIKE 311 (561)
Q Consensus 237 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~---~~~r~ 311 (561)
+...+..+...+...|+.+...+..+.........+.. .-.+..+.+.++.|....+..|+.++.-++.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444455556677788888877777554332222222 22466777778888777777788877776644 23344
Q ss_pred HHHhhhhHHHHHHHhhcCCH--HHHHHHHHHHHHhcC---CChHHHHHHHHhCcHHHH--HHhhhc---------CCCHH
Q 008560 312 NFIEENAVMVLLGLVASGTA--LAQENVFGCLCNLVS---DDESLKLLIVREGGIGSL--KSYWDS---------VSAVK 375 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~---~~~~~r~~~~~~g~i~~L--v~lL~~---------~~~~~ 375 (561)
.+.+ ...|.|...+.+++. ..+..++.+|.-+++ .++..-.. -...++.+ ..+.+. .+++.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE--LMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 4443 578889999887654 455666667766654 22111110 00111111 111111 12346
Q ss_pred HHHHHHHHHHHhhc-Chhh-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 376 SLEVAVELLSQLAS-CLPI-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 376 ~~e~a~~aL~~L~~-~~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
+...|+.+...|.. .+.. ..... ...++.|+.+|.+.+..+|..|..+|.-|.
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88888888888885 3332 22221 357899999999999999999988876664
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.16 E-value=0.27 Score=50.96 Aligned_cols=294 Identities=17% Similarity=0.102 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC------CcchHHHHHhchhhHH
Q 008560 165 ESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV------DSSKHVLIAEGLLLLN 238 (561)
Q Consensus 165 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~------~~~~~~i~~~g~~~i~ 238 (561)
..|.+++..|..++..-.-.+...+ ....++..-+...+|++++.++..|..+... ++.-+.-...| .+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~--~fw 345 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRA--PFW 345 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhc--cHH
Confidence 4778888777665532111111111 1111222233455789999999998877531 11111111111 111
Q ss_pred H------HHHHH-hcCCHHHHHHHHHHHHHhcCCC-----chH---HHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHH
Q 008560 239 H------LIRVL-ESGSGFAKERACVALQALSFSK-----ENA---RAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRN 302 (561)
Q Consensus 239 ~------Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~-----~~~---~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~n 302 (561)
. .-+.+ ++.....+..+|.++.++...+ +.+ ..+...| |. +.+.-.+..|.+++.-
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~G--------C~d~~~~lv~~aA~Ra~~V 417 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLG--------CNDSKNRLVKAAASRALGV 417 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhc--------ccchHHHHHHHHHHhhcee
Confidence 1 11111 1112234567777887775431 111 1111111 11 1122245666677666
Q ss_pred hhCCchhhHHHH-hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC----CChHHHHHHHHhCcHHHHHHhhhc-----CC
Q 008560 303 LAGFSEIKENFI-EENAVMVLLGLVASGTALAQENVFGCLCNLVS----DDESLKLLIVREGGIGSLKSYWDS-----VS 372 (561)
Q Consensus 303 Ls~~~~~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~~~r~~~~~~g~i~~Lv~lL~~-----~~ 372 (561)
+..++..|.... -+.+.......+.+..-..++.+++++.||+. +-+..+..-.+..+ ..|.+++.. ..
T Consensus 418 yVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad 496 (728)
T KOG4535|consen 418 YVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASAD 496 (728)
T ss_pred EEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhh
Confidence 666665554332 33455555566666667899999999999975 11211111111111 112233321 22
Q ss_pred CHHHHHHHHHHHHHhhcChh-----hHHHHHhcchHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHHH-HHHHHhC-CCh
Q 008560 373 AVKSLEVAVELLSQLASCLP-----IAEVLVSDGFVVRLVN-VLNCGVLSVRIAAARAVSMLGINSKA-RKEMGEC-GCI 444 (561)
Q Consensus 373 ~~~~~e~a~~aL~~L~~~~~-----~~~~l~~~~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~~~-~~~i~~~-g~i 444 (561)
..+++..++++|+|+...-. +-.++. .+.+..+.. ..-.+...++-+|+.++.||..++.. -+.+-=+ -+.
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 24899999999999985222 111222 233333332 33445679999999999999987643 1222112 247
Q ss_pred HHHHHhccC-CCHHHHHHHHHHHHHhhcc
Q 008560 445 GPLIKMLDG-KAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 445 ~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~ 472 (561)
+.|+.++.+ .+-.+|..|+.+|..-...
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 888888874 6788999999888655443
No 143
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.08 E-value=2.8 Score=40.71 Aligned_cols=220 Identities=17% Similarity=0.139 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHHHhcCC-CchHHHHHh-cCCHHHHHHHHhc-------C--Ch---HHHHHHHHHHHHhhCCchhhHH
Q 008560 247 GSGFAKERACVALQALSFS-KENARAIGS-RGGISSLLEICQA-------G--TP---GSQAFAAGVLRNLAGFSEIKEN 312 (561)
Q Consensus 247 ~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~ll~~-------~--~~---~~~~~A~~aL~nLs~~~~~r~~ 312 (561)
.+++.|+.|..-|..--+. ++-...+-. .|.+..|+.=+-+ . ++ .-...|+..|..++++++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 4677788776666655443 333333333 5666666542221 1 11 2236777778888999999999
Q ss_pred HHhhhhHHHHHHHhhcCC-----HHHHHHHHHHHHHhcCCC-hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 008560 313 FIEENAVMVLLGLVASGT-----ALAQENVFGCLCNLVSDD-ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQ 386 (561)
Q Consensus 313 i~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~ 386 (561)
+.++...--|.-+|+..+ +.++..+++.+..+...+ .+.-..+.+...+|..++.++.++. -.+..|.-++..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gse-lSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSE-LSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-H-HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 999987766666665332 357888999999998755 4456667788999999999998764 788889888888
Q ss_pred hhcChhhHHHHHhc--------chHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHh-----cc
Q 008560 387 LASCLPIAEVLVSD--------GFVVRLVN-VLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKM-----LD 452 (561)
Q Consensus 387 L~~~~~~~~~l~~~--------~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~l-----l~ 452 (561)
+-.++.|-..+++. .++..++. +....++.+-+....+-.+|+.++..+.++.+ ++|..++= +-
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHH
Confidence 88888877766653 22444444 33566889999999999999999888888764 33432210 00
Q ss_pred CCCHHHHHHHHHHHHHh
Q 008560 453 GKAVEEKESAAKALSTL 469 (561)
Q Consensus 453 ~~~~~v~~~A~~aL~~L 469 (561)
.+++.++..-.+++.++
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 23566666555555554
No 144
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.06 E-value=2.1 Score=48.61 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=114.3
Q ss_pred HHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh----cCC----HHHHHHH
Q 008560 271 AIGSRGGISSLLEICQAG-----TPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA----SGT----ALAQENV 337 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~-----~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~----~~~----~~~~~~a 337 (561)
.+.+.||+..|+.++.+- ........+..|...+....||+.+++.|+++.|++.+. .+. ..+-+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 345679999999988753 233446677778888889999999999999999998874 333 3555555
Q ss_pred HHHHHHhcCCChH--HHH--HHHHhC-----c---HHHHHHhhhcC---CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcc
Q 008560 338 FGCLCNLVSDDES--LKL--LIVREG-----G---IGSLKSYWDSV---SAVKSLEVAVELLSQLAS-CLPIAEVLVSDG 401 (561)
Q Consensus 338 ~~~L~~L~~~~~~--~r~--~~~~~g-----~---i~~Lv~lL~~~---~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~ 401 (561)
+.++..+...... ... ...... . +..+++.+.+. +.+.+....+++|-+|+. .++..+.++++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 5555555432211 110 001111 2 55566666543 346788999999999996 66666666552
Q ss_pred hHHHHHHHhc--C-CCHHHHHHHHHHHHHHcC----C---HHHHHHHHhCCChHHHHHhccCCCH
Q 008560 402 FVVRLVNVLN--C-GVLSVRIAAARAVSMLGI----N---SKARKEMGECGCIGPLIKMLDGKAV 456 (561)
Q Consensus 402 ~i~~Lv~lL~--~-~~~~~~~~A~~aL~~L~~----~---~~~~~~i~~~g~i~~Lv~ll~~~~~ 456 (561)
+.+.+++=+ . ...+ -+.-+..++.++. + ...++.+.+.|++...+..+....|
T Consensus 271 -F~p~l~f~~~D~~~~~~-~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPD-EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred -HHHhcChhhcccccCch-HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 222222111 1 1111 1233556666654 2 4678999999999999998875443
No 145
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=4.8 Score=46.16 Aligned_cols=250 Identities=16% Similarity=0.101 Sum_probs=136.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchH
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
++++..|...|++.+..++..|+..+..++.-.. ..+ ... ++...+.++.-. +...-..++-+|..|+..---.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 4677778888888888999999999998886533 222 233 677777766544 4666778888888886642110
Q ss_pred HHHHhcCCHHHHHHHHhc--------CChHHHHHHHHHHHHhhCCchhh--HHHHhhhhHHHHHHHhhcCCHHHHHHHHH
Q 008560 270 RAIGSRGGISSLLEICQA--------GTPGSQAFAAGVLRNLAGFSEIK--ENFIEENAVMVLLGLVASGTALAQENVFG 339 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~--------~~~~~~~~A~~aL~nLs~~~~~r--~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~ 339 (561)
.... ..+++.++.-|.- ....++.+|+-+.|.++...+-. ..++..=+-..|+..+-+.+...+..|..
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 0000 1235555554432 23467889999999998754221 11222222233444455666678888887
Q ss_pred HHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCC--HHHHHHHHHHHHH-hhcChhhHHHHHhcchHHHHHH-HhcCCCH
Q 008560 340 CLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSA--VKSLEVAVELLSQ-LASCLPIAEVLVSDGFVVRLVN-VLNCGVL 415 (561)
Q Consensus 340 ~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~--~~~~e~a~~aL~~-L~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~ 415 (561)
++.+... +.|-.|.=+.++...+. ...+.+|...|.. ++.++..++.+ +.+++. -+.+-+.
T Consensus 494 AlqE~VG----------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 494 ALQENVG----------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHhc----------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccH
Confidence 7776543 22222111122222111 1223333333222 12232222222 233332 2445578
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 008560 416 SVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKA 465 (561)
Q Consensus 416 ~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~a 465 (561)
.+++.++.+|.+|+. .+++ ...+..++|+....+++...+.-..-+
T Consensus 559 ~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la 605 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLA 605 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHH
Confidence 999999999999875 2322 233556777776666666655543333
No 146
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.88 E-value=1.8 Score=41.87 Aligned_cols=198 Identities=21% Similarity=0.184 Sum_probs=126.6
Q ss_pred HHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008560 188 AVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS 265 (561)
Q Consensus 188 i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 265 (561)
+....+|+.|+..|... .|.+|..|..+|..+. + .. .++.+-+..++....+++.+-.++..+...
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~--~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PE--SLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hh--hHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 34568899999988654 4889999999998876 2 23 455555555566667777666666666432
Q ss_pred Cc-----hHHHH--------HhcCCHHHHHHHHhcCChH--HHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCC
Q 008560 266 KE-----NARAI--------GSRGGISSLLEICQAGTPG--SQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGT 330 (561)
Q Consensus 266 ~~-----~~~~i--------~~~g~i~~Lv~ll~~~~~~--~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~ 330 (561)
+. +.... ...+-+..|-..+.+.+.. -+..|.-.|+|+- .+.+|..|++-+..++
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGLADDS 200 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhcccch
Confidence 11 00000 1112244444444443322 2344444455442 2357778888888777
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHH
Q 008560 331 ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNV 409 (561)
Q Consensus 331 ~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~l 409 (561)
.-.+-.++-++..|-+. ..|+.|.+.|... ..+-++-.|+.+|+.++. ...++.|.++
T Consensus 201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~ 259 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHH
Confidence 77788888888777553 3588888888653 345788899999998876 2356788888
Q ss_pred hcCCCHHHHHHHHHHHHHH
Q 008560 410 LNCGVLSVRIAAARAVSML 428 (561)
Q Consensus 410 L~~~~~~~~~~A~~aL~~L 428 (561)
+.+.+.-+++.+..+|--+
T Consensus 260 ~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 260 LGDEERVVRESCEVALDML 278 (289)
T ss_pred cCCcHHHHHHHHHHHHHHH
Confidence 8887778888777666543
No 147
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.76 E-value=0.85 Score=50.91 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=102.5
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHV 228 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~ 228 (561)
....++.++.+.+.+.|.|+-.=-.+...++.+++-.. =++..+.+=+.++++.+|-.|++++..+-.. .
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti~kDl~d~N~~iR~~AlR~ls~l~~~-----e 123 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK-----E 123 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----H
Confidence 34455566666666777766666666666665552211 2356667777888999999999998877421 1
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
+ -.. .++++.+.+.++++.+|..|+-++.++-.-+ +..+.+.|.+..+..++.+.+|.+...|..+|..+...
T Consensus 124 l-~~~--~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 L-LGN--IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred H-HHH--HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2 233 7889999999999999999999999886432 33455667888888889999999999999999888544
No 148
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.76 E-value=5.6 Score=40.61 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=154.0
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chH-----HHHHhcCCHHHHHHHHhc-CChHHHHHHHHHH
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENA-----RAIGSRGGISSLLEICQA-GTPGSQAFAAGVL 300 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~-----~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL 300 (561)
.+...+ .+..|+..|..-+-+.|..++.+..++-... +++ ..+..+ .-+.|..++.. ++++.--.+-..|
T Consensus 71 Ei~~~d--ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSD--LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHT--HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHhC--HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHH
Confidence 455678 8999999999999999999999999887642 222 122222 12222223322 3566667788888
Q ss_pred HHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhC---cHHHHHHhhhcCCCHHHH
Q 008560 301 RNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREG---GIGSLKSYWDSVSAVKSL 377 (561)
Q Consensus 301 ~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g---~i~~Lv~lL~~~~~~~~~ 377 (561)
+.....+...+.+.+...+-.+.+.+..++-++...|..++..+-......-......+ .+....+++.+++. -.+
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY-vtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY-VTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH-HHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe-Eee
Confidence 99988988888888888999999999999999999999999998777665555555544 46677788888765 899
Q ss_pred HHHHHHHHHhhcChhhHHHHHh---c-chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----HHHHHHHHhCCChHHHHH
Q 008560 378 EVAVELLSQLASCLPIAEVLVS---D-GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN----SKARKEMGECGCIGPLIK 449 (561)
Q Consensus 378 e~a~~aL~~L~~~~~~~~~l~~---~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~----~~~~~~i~~~g~i~~Lv~ 449 (561)
..++..|+.|-..+.+...+.. . .-+..++.+|++.+..+|-.|-.++--+..+ ++..+.+... =..|+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~ 304 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLR 304 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHH
Confidence 9999999999987777665443 2 5688899999999999999999888777764 3444444333 234444
Q ss_pred hcc
Q 008560 450 MLD 452 (561)
Q Consensus 450 ll~ 452 (561)
.+.
T Consensus 305 fl~ 307 (335)
T PF08569_consen 305 FLK 307 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 149
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.75 E-value=3.9 Score=45.95 Aligned_cols=255 Identities=16% Similarity=0.117 Sum_probs=152.5
Q ss_pred hHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCch
Q 008560 236 LLNHLIRVLESG-----SGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 236 ~i~~Lv~lL~~~-----~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~ 308 (561)
....++.+++++ .+..-..+.+++...+... .+... ..+ .+...+..+. +..+..+-.|+++++..+...-
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~-~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v 523 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQL-LQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKV 523 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhH-HHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCcee
Confidence 344455444443 4554446666666544431 12211 111 1223333332 3455667777777777763221
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhh-cCCCHHHHHHHHHHHHHh
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWD-SVSAVKSLEVAVELLSQL 387 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~-~~~~~~~~e~a~~aL~~L 387 (561)
.. . ...+++..|+++....+.++...-.++|...+..|+. .....+....|....++- ..+++.+...+-.++..|
T Consensus 524 l~-~-~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 524 LL-S-LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEEL 600 (1005)
T ss_pred cc-c-cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 11 1 1357888889998888888888889999999988864 222334445565555553 356667777777888877
Q ss_pred hcChhhHHHHHhcchHHHHHHHhcCCC----HHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhc-cCCCHHHHH
Q 008560 388 ASCLPIAEVLVSDGFVVRLVNVLNCGV----LSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKML-DGKAVEEKE 460 (561)
Q Consensus 388 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~ 460 (561)
+....+..-+ ....+|.++..|.... .....-|...|..+..+ +..-+.+... +.|.+.+.. ++++...-.
T Consensus 601 ~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ 678 (1005)
T KOG2274|consen 601 LQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQ 678 (1005)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHH
Confidence 7644433333 2367999999997655 46666777777777763 2333333322 356666554 577888888
Q ss_pred HHHHHHHHhhccccchhhHhhcCCCHH--H----HHHhccCCc
Q 008560 461 SAAKALSTLMLYAGNRKILRKDERGIV--T----VVQLLDPLI 497 (561)
Q Consensus 461 ~A~~aL~~L~~~~~~~~~~~~~~~~i~--~----Lv~lL~~~~ 497 (561)
.+.++|+.+......+-.-..++.|.. . +-+||++..
T Consensus 679 ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 679 NATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred hHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCcc
Confidence 899999999876544444445556655 3 445778763
No 150
>PRK14707 hypothetical protein; Provisional
Probab=94.67 E-value=16 Score=45.35 Aligned_cols=386 Identities=17% Similarity=0.123 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH-HhcCCcchHHHHHhchhhHHHHHHH
Q 008560 165 ESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIAR-VSMVDSSKHVLIAEGLLLLNHLIRV 243 (561)
Q Consensus 165 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~-La~~~~~~~~i~~~g~~~i~~Lv~l 243 (561)
+....|+..|..-+..+++.+..+-..++-..|=.|-+-++......|+.+|.. |+.+..-+..+-.. .+...+.-
T Consensus 809 ~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~Q---evantLNA 885 (2710)
T PRK14707 809 PACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAH---GVVIVLNA 885 (2710)
T ss_pred hHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchH---HHHHHHhh
Confidence 444555556665555555555544334444444445556666666666666664 45555555444322 34444444
Q ss_pred Hhc-CCHHHHHHHHHHH-HHhcCCCchHHHHHhcCCHHHHHHHHhc--CChHHHHHHHHHHHHhhCCchhhHHHHhhhhH
Q 008560 244 LES-GSGFAKERACVAL-QALSFSKENARAIGSRGGISSLLEICQA--GTPGSQAFAAGVLRNLAGFSEIKENFIEENAV 319 (561)
Q Consensus 244 L~~-~~~~~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v 319 (561)
|.. +.......|+.+| ..|..+++-+..+-.. +|...+.-|.. +.+..+..+......|+..++.+..|-..++.
T Consensus 886 LSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ-~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~ls 964 (2710)
T PRK14707 886 LSKWPNVPVCAAAASALAERLADEPELRKALSAH-RVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLP 964 (2710)
T ss_pred hccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHH-HHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHH
Confidence 443 3333344444444 4555555555555444 34444444432 34455666665666777777777777666555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhhcChhhHHHHH
Q 008560 320 MVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLASCLPIAEVLV 398 (561)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~~~~~~~~~l~ 398 (561)
.+|-.+-+=++......++.+|..-...++..|.. .+.-++...++-|..- ..+..++.+..+-..|...+.-++.+
T Consensus 965 NtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~a-l~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~am- 1042 (2710)
T PRK14707 965 QVLNALSKWPDVPAGGEVVDALAERLVDEPALRNA-LDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKAL- 1042 (2710)
T ss_pred HHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhh-cchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhc-
Confidence 55555544445555666666666655555556643 3444555666666553 33455555555555565555544443
Q ss_pred hcchHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhccccc
Q 008560 399 SDGFVVRLVNVLNC--GVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALSTLMLYAGN 475 (561)
Q Consensus 399 ~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~ 475 (561)
+.-.+...+.-|.. +.+..+..+......|....+.++.|--.|.-..|-.+-+ ...+..+..+..+-..|.....-
T Consensus 1043 daQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l 1122 (2710)
T PRK14707 1043 SSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGL 1122 (2710)
T ss_pred chHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccch
Confidence 22234444555543 3456666666666677777888887766666666666555 45666666666665566555554
Q ss_pred hhhHhhcCCCHHHHHHhccCCccc-hhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccC-ccch----HHHHHhh
Q 008560 476 RKILRKDERGIVTVVQLLDPLIQN-LDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMD-IEGA----NKLLESL 549 (561)
Q Consensus 476 ~~~~~~~~~~i~~Lv~lL~~~~~~-~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~-~~~a----kk~~~~l 549 (561)
+..| +..++..++.-|..=+.. ..+..+...-..|+.++..|..|-..+.-..|-.|..-. .+.+ ..+..+|
T Consensus 1123 ~~~f--d~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rl 1200 (2710)
T PRK14707 1123 RHVF--DPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERA 1200 (2710)
T ss_pred hccC--CHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhh
Confidence 5544 223566566555432232 223223333455667777777766666655555554321 2222 3566666
Q ss_pred c-cCcccccc
Q 008560 550 G-RGKIWGVF 558 (561)
Q Consensus 550 ~-~~~~~~~~ 558 (561)
+ .+..|.-|
T Consensus 1201 G~a~~P~r~F 1210 (2710)
T PRK14707 1201 GSAELPWRQF 1210 (2710)
T ss_pred cCCCCCchhc
Confidence 6 56666555
No 151
>PRK14707 hypothetical protein; Provisional
Probab=94.62 E-value=16 Score=45.25 Aligned_cols=377 Identities=15% Similarity=0.103 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH-HhcCCcchHHHHHhchhhHHHHHHHH
Q 008560 166 SKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIAR-VSMVDSSKHVLIAEGLLLLNHLIRVL 244 (561)
Q Consensus 166 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~-La~~~~~~~~i~~~g~~~i~~Lv~lL 244 (561)
....|+..|......++.-+..+-..|.-..|=.+.+-++..+.++|+.+|.. ++.+..-+..+-.. -+...+.-|
T Consensus 222 ~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q---~vanalNal 298 (2710)
T PRK14707 222 DCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI---NVTQALNAL 298 (2710)
T ss_pred hHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH---HHHHHHhhh
Confidence 34455555665555554444433334444444455566666666666666653 44333333333222 233333334
Q ss_pred hc-CCHH-HHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc--CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHH
Q 008560 245 ES-GSGF-AKERACVALQALSFSKENARAIGSRGGISSLLEICQA--GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVM 320 (561)
Q Consensus 245 ~~-~~~~-~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~ 320 (561)
.. .+.. .+..|..+-..|..+++-+..+-.. ++...+..+.. ++....+.|...-..|+.+++.|..+--.|+-.
T Consensus 299 SKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~ 377 (2710)
T PRK14707 299 SKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSS 377 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHH
Confidence 33 3333 3444444444565555444333222 23333443432 234455555555566777778887776554444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHH-hhcChhhHHHHHh
Q 008560 321 VLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQ-LASCLPIAEVLVS 399 (561)
Q Consensus 321 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~-L~~~~~~~~~l~~ 399 (561)
+|-.+-+=.+..+...++..|..=..++.+.+..+-.. ++..+++-|..-++..+...+...|.- ++...+-+..+--
T Consensus 378 ~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p 456 (2710)
T PRK14707 378 VLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP 456 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh
Confidence 44444443445677777777777666777777655444 455566666654443444444444443 4445554444422
Q ss_pred cchHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCC-HHHHHHHHHHHHHhhccccch
Q 008560 400 DGFVVRLVNVLNC--GVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKA-VEEKESAAKALSTLMLYAGNR 476 (561)
Q Consensus 400 ~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~A~~aL~~L~~~~~~~ 476 (561)
.+ |...+..|.. .++...+.|-.....|+.+.+.++.|--.++...|-.+-+-.+ +...+.+..+-..+.....-+
T Consensus 457 ~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~ 535 (2710)
T PRK14707 457 IN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLR 535 (2710)
T ss_pred HH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhh
Confidence 22 3444444432 2445566666666777777777777765555555555555333 333333333333444333333
Q ss_pred hhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccCcc-chHHHHHhhc
Q 008560 477 KILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMDIE-GANKLLESLG 550 (561)
Q Consensus 477 ~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~~~-~akk~~~~l~ 550 (561)
+.| +...+..++.-|...+.+..-+.++..|..+. ..+..++.+-..++.-.|-.|..-++. .+++.+..|.
T Consensus 536 ~~~--~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA 609 (2710)
T PRK14707 536 KAF--DAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALA 609 (2710)
T ss_pred hhh--hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHH
Confidence 333 12345555665644444443444555555543 555566666555544444455444333 3455554443
No 152
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.53 E-value=8.1 Score=41.45 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHH
Q 008560 331 ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNV 409 (561)
Q Consensus 331 ~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~l 409 (561)
+.+...++..+..++..+- -...+ ...+..|-.+|.+.. ...+-.|+++|-.|+. .|.-. . -+-+.+-.+
T Consensus 278 emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv-~----vcN~evEsL 348 (898)
T COG5240 278 EMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV-S----VCNKEVESL 348 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee-e----ecChhHHHH
Confidence 4566677777666654330 00000 113444444454433 3677788888888875 43310 0 011222223
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHH
Q 008560 410 LNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTV 489 (561)
Q Consensus 410 L~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~L 489 (561)
+.+.+-.+...|...|.+-.. ++....+ +..+..++++-++..+.-+..++..|+..-+..+.. -+..|
T Consensus 349 Isd~Nr~IstyAITtLLKTGt-~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL 417 (898)
T COG5240 349 ISDENRTISTYAITTLLKTGT-EETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFL 417 (898)
T ss_pred hhcccccchHHHHHHHHHcCc-hhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHH
Confidence 444444444444444443322 3333333 233344444445555666677777777554433222 23334
Q ss_pred HHhccCCccchhhHHHHHHHHHhc-CCchHHHH
Q 008560 490 VQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQ 521 (561)
Q Consensus 490 v~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~ 521 (561)
...|-.+++-..|++++-++..+. ..|+.++.
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr 450 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKER 450 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhCchHHHH
Confidence 444433444445556665555443 44444443
No 153
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.39 E-value=1.9 Score=49.87 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHHHHhhcc-CchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----CcchHHHHHhchhhH
Q 008560 163 SAESKNSAMDSLLGLLQE-DDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV----DSSKHVLIAEGLLLL 237 (561)
Q Consensus 163 ~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~----~~~~~~i~~~g~~~i 237 (561)
..+.|.+|+.-|..++.. +++++ -.-++|.++.++..+..++|..|+.+|..+-.. +..-..|.-+- .+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY--lf 509 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY--LF 509 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh--hh
Confidence 457899999988888764 23222 246799999999999999999999988875432 22234455555 78
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhh
Q 008560 238 NHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEE 316 (561)
Q Consensus 238 ~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~ 316 (561)
|.|-.++.+ ....+|..-|..|..|+.... .+.+.+--.....++.+.+.+. ..+. ..+.-...+ -.
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nset-------~~~~-~~~~~~~~L-~~ 577 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSET-------APEQ-NYNTELQAL-HH 577 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCccccc-------cccc-ccchHHHHH-HH
Confidence 888888887 455667766777766654321 1111000000011111111110 0000 000011111 11
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhC----cHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChh
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREG----GIGSLKSYWDSVSAVKSLEVAVELLSQLASCLP 392 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g----~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~ 392 (561)
++=.....++.+.+.-++..-+..|..||. .+.+++ .+..|+.+|.+. |...+-.-...|.-+|.+-.
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~-------FFGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCV-------FFGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHH-------HhhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEe
Confidence 222334455555555666655555555543 222322 467777788776 45777776777766664211
Q ss_pred hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 393 IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 393 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
.+ -++...+|-|.+-|.++.+.+...|..+|.-|+...-.++..+. ..++...-+|-..+.=+|..++..+.....
T Consensus 650 ~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 650 WR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred ee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 11 01345678888888888888888888888888864322222111 112333334445677788888888776663
No 154
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.31 E-value=6.8 Score=40.78 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=128.3
Q ss_pred HHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcC-----C-------------------------hHHH----HHHHH
Q 008560 254 RACVALQALSFSK-ENARAIGSRGGISSLLEICQAG-----T-------------------------PGSQ----AFAAG 298 (561)
Q Consensus 254 ~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~-----~-------------------------~~~~----~~A~~ 298 (561)
.|...|..+.... ..-..+.+.+|+..+++.++.+ . +..+ +.-++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 3555666665543 3344666678888877765421 0 0012 33344
Q ss_pred HHHHhhC-Cc---hhhHHHHh-hhhHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhh-
Q 008560 299 VLRNLAG-FS---EIKENFIE-ENAVMVLLGLVASGTA---LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWD- 369 (561)
Q Consensus 299 aL~nLs~-~~---~~r~~i~~-~g~v~~Lv~lL~~~~~---~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~- 369 (561)
.+..+.. .. +.-+.+.+ ......|..++..... .+-..|+..+..+...++..=..+.+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 4444444 22 22334556 4456667777765443 67788999999999998877778888999999999998
Q ss_pred c--CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCH-------HHHHHHHHHHHHHcC-CHHHHHHHH
Q 008560 370 S--VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVL-------SVRIAAARAVSMLGI-NSKARKEMG 439 (561)
Q Consensus 370 ~--~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-------~~~~~A~~aL~~L~~-~~~~~~~i~ 439 (561)
. ..+.++.-..-.+|..||-+..+.+.+.+.+.++.+++++.+.+. +.....-..+-.|.+ .+..+..+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 4 345577778888999999999999999999999999998876432 122222334555555 466666555
Q ss_pred hC--CChHHHHHhccC
Q 008560 440 EC--GCIGPLIKMLDG 453 (561)
Q Consensus 440 ~~--g~i~~Lv~ll~~ 453 (561)
++ ..+..++.+-..
T Consensus 243 ~~ii~~l~~l~~~g~~ 258 (379)
T PF06025_consen 243 DAIIKILDRLVELGKD 258 (379)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 43 234555555443
No 155
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.30 E-value=1.9 Score=44.71 Aligned_cols=271 Identities=18% Similarity=0.157 Sum_probs=146.0
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHH-HHhcCCCchHH
Q 008560 194 VPVLVKLMDS-SSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES-GSGFAKERACVAL-QALSFSKENAR 270 (561)
Q Consensus 194 v~~Lv~lL~~-~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L-~~Ls~~~~~~~ 270 (561)
|..+++=+.+ ....+|..++--|+.-..+++.+..+.+.| .+..+++.+.. +....-..++.++ .-++.+..+-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g--~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHG--LVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcC--cHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 4555554553 335778888888888788899999999999 99999999944 4332444444444 44444444444
Q ss_pred HHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc---------CCHHHHHHHHHH
Q 008560 271 AIGSRGGISSLLEICQAGTP-GSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVAS---------GTALAQENVFGC 340 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~-~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~ 340 (561)
.+-..+....++.++.-... ....... .....+-.+ +..+.+..+-+.+.. ....-+.-|..+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk-~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSK-VQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhH-HHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 44445556666777761100 0000000 000000001 112222222233211 111234444444
Q ss_pred HHHhc--------------CCChHHHHHHHHhCcHHHHHHhhhc----CC-----------CHHHHHHHHHHHHHhhc-C
Q 008560 341 LCNLV--------------SDDESLKLLIVREGGIGSLKSYWDS----VS-----------AVKSLEVAVELLSQLAS-C 390 (561)
Q Consensus 341 L~~L~--------------~~~~~~r~~~~~~g~i~~Lv~lL~~----~~-----------~~~~~e~a~~aL~~L~~-~ 390 (561)
+..++ ...+.+|+.+.+.|+++.++.++.. .. +....+.++++|.+.+. +
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44442 1224578888899999999999862 10 12356788999999885 6
Q ss_pred hhhHHHHHhc--chHHHHHH-HhcCC---CHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhc-------c----
Q 008560 391 LPIAEVLVSD--GFVVRLVN-VLNCG---VLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKML-------D---- 452 (561)
Q Consensus 391 ~~~~~~l~~~--~~i~~Lv~-lL~~~---~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll-------~---- 452 (561)
+++...+... +.++.+.. ++... .......+++.+.|++. +++.++.+...+....+..+. +
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6666666654 33333333 33322 23446788899999998 455655555443322222111 1
Q ss_pred ---CCCHHHHHHHHHHHHHhhccc
Q 008560 453 ---GKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 453 ---~~~~~v~~~A~~aL~~L~~~~ 473 (561)
.+.-+....+.++|.||+.+.
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 122345566777777777543
No 156
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=13 Score=42.77 Aligned_cols=277 Identities=16% Similarity=0.100 Sum_probs=143.7
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhH-----H-----------------------HHhcCCh-----
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVV-----I-----------------------AVAQGVV----- 194 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~-----~-----------------------i~~~g~v----- 194 (561)
+.+.+..|+..++..+...+..|++.+..+....+.+-. . ++..|.+
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 345667778888888888999999999888877663210 0 1112222
Q ss_pred ----HHHHHhhcC--------CCHHHHHHHHHHHHHHhcCCcc--hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 008560 195 ----PVLVKLMDS--------SSLEMKEKTVASIARVSMVDSS--KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQ 260 (561)
Q Consensus 195 ----~~Lv~lL~~--------~~~~~~e~a~~~L~~La~~~~~--~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 260 (561)
|.++.-|.- ....+|+.|+-+.+.++...+. -+.++..= +-..|+..+-+....+|..|..+++
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L--~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL--ASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH--HHHHHHHHhcCchhhHhHHHHHHHH
Confidence 112221111 1135677777777777643221 12222222 2223344445567788888888887
Q ss_pred HhcCCCch--------------------------HHHHHh-cCCHHHHHHHHh-----cCChHHHHHHHHHHHHhhCCch
Q 008560 261 ALSFSKEN--------------------------ARAIGS-RGGISSLLEICQ-----AGTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 261 ~Ls~~~~~--------------------------~~~i~~-~g~i~~Lv~ll~-----~~~~~~~~~A~~aL~nLs~~~~ 308 (561)
+...-..| +..|++ .|-..++++.+- +-+...++.++.+|.+|+...
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~- 575 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE- 575 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-
Confidence 66442111 122333 233444444332 346788999999999987543
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH--HHHHHhCc--------HHHHHHhhhcCCCHHHHH
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK--LLIVREGG--------IGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r--~~~~~~g~--------i~~Lv~lL~~~~~~~~~e 378 (561)
.+....+.++.+++...+.+...+....-+...+....-... -.-..+.. .+...+.+..+...-.+.
T Consensus 576 --pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~ 653 (1133)
T KOG1943|consen 576 --PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQ 653 (1133)
T ss_pred --HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHH
Confidence 233444677888888777777665554444444433221111 00011111 122223333332234555
Q ss_pred HHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 379 VAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 379 ~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
..+..+.++.. ...-....+..+.-..+.+.+...+ .+++.|.+++..++.
T Consensus 654 ~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 654 ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 56666666664 2222233333333333344443333 677778888777775
No 157
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=9.6 Score=45.47 Aligned_cols=286 Identities=20% Similarity=0.175 Sum_probs=148.9
Q ss_pred hHHHHHhHHHHHHHhcC--CCHH-HHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008560 145 REAVRAESRNLITRLQI--GSAE-SKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM 221 (561)
Q Consensus 145 ~~~~~~~v~~Lv~~L~~--~~~~-~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~ 221 (561)
.+..+.+.+.|+.+|.. -||+ ...+|+..+++.+-.+.++..--.-.....-|+.-|.+..=.+||.++.+|..|-.
T Consensus 989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 45567788888888842 2332 33568888988877664433211112344445555555556899999999998876
Q ss_pred CCcchHHHHH-hchhhHHHHHHHHhcCCHHHHH---HHHHHHHHhcC---CCc-h-HHHHHhcCCHHHHHH--HHhcCCh
Q 008560 222 VDSSKHVLIA-EGLLLLNHLIRVLESGSGFAKE---RACVALQALSF---SKE-N-ARAIGSRGGISSLLE--ICQAGTP 290 (561)
Q Consensus 222 ~~~~~~~i~~-~g~~~i~~Lv~lL~~~~~~~~~---~aa~~L~~Ls~---~~~-~-~~~i~~~g~i~~Lv~--ll~~~~~ 290 (561)
........-. .. .+..+.+++++=...+|+ .++.+|..|+. +.. . +..-.-..++|.|++ ++ +.-+
T Consensus 1069 g~~~~~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLPE--LWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred CCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchH
Confidence 5433221111 23 677777777664444444 55666666643 111 1 111111124555543 22 4457
Q ss_pred HHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcCCHHHHH-HHHHHHHHhcCCC-hHHHHHHHH---------
Q 008560 291 GSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASGTALAQE-NVFGCLCNLVSDD-ESLKLLIVR--------- 357 (561)
Q Consensus 291 ~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~-~a~~~L~~L~~~~-~~~r~~~~~--------- 357 (561)
+.+..++.++..|+... ..+..+ ...++.|++....-++.+.. -++++ .|+.... +..|..+.+
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~ 1222 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETIN 1222 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHH
Confidence 88899999999998654 233332 34677777776654443322 22222 2221110 112222222
Q ss_pred -----------hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Ch-hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHH
Q 008560 358 -----------EGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CL-PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARA 424 (561)
Q Consensus 358 -----------~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~a 424 (561)
+..+|.+.++++++-.-..+..|...+..|+. .. +.... ....+..+...+++.++.++..-+.+
T Consensus 1223 ~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1223 KCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccccHHHHHHHHHH
Confidence 12345555555554333344445555555542 11 10000 00124444445567788888887788
Q ss_pred HHHHcC--CHHHHHHH
Q 008560 425 VSMLGI--NSKARKEM 438 (561)
Q Consensus 425 L~~L~~--~~~~~~~i 438 (561)
...|.. +++..+..
T Consensus 1301 mG~L~k~Ss~dq~qKL 1316 (1702)
T KOG0915|consen 1301 MGYLAKFSSPDQMQKL 1316 (1702)
T ss_pred HHHHHhcCChHHHHHH
Confidence 888875 34333333
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.03 E-value=0.35 Score=39.70 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=48.9
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH--hhhhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008560 276 GGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI--EENAVMVLLGLVASGTALAQENVFGCLCN 343 (561)
Q Consensus 276 g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~--~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 343 (561)
..+++++..+.+.+..++..|+.+|+|++.... ..+. -..+...|.+++.+.++.++..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 368899999999999999999999999986542 2332 24577888888888887776654 44443
No 159
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=4.1 Score=48.35 Aligned_cols=301 Identities=15% Similarity=0.134 Sum_probs=156.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCc-chHHHH-HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCchHHHH
Q 008560 197 LVKLMDSSSLEMKEKTVASIARVSMVDS-SKHVLI-AEGLLLLNHLIRVLESGSGFAKERACVALQALSF--SKENARAI 272 (561)
Q Consensus 197 Lv~lL~~~~~~~~e~a~~~L~~La~~~~-~~~~i~-~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~--~~~~~~~i 272 (561)
|..++.+++|..|...+--|..+...-. -+.... ... ...++.++|...+.-+|..|++.|.-.-+ +.+.+..
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~e--I~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~- 899 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKE--IQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS- 899 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHH--HHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH-
Confidence 3445567788877665544433332211 222222 233 66888899988888888888877653322 1222322
Q ss_pred HhcCCHHHHHHHHhcC---------------------ChHH-HHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCC
Q 008560 273 GSRGGISSLLEICQAG---------------------TPGS-QAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGT 330 (561)
Q Consensus 273 ~~~g~i~~Lv~ll~~~---------------------~~~~-~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~ 330 (561)
.+..|++-+..| +|.+ +-..-.=|+||+++ +-+...|-.++++-++..
T Consensus 900 ----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd------l~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 900 ----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD------LGQPDLVYKFMQLANHNA 969 (1702)
T ss_pred ----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh------cCChHHHHHHHHHhhhhc
Confidence 344555544332 1222 33344455666543 223345666777765432
Q ss_pred H-HHHHHHHHHHHHhcCCChHHHHHHH--HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh-cC-hhhHHHHHhcchHHH
Q 008560 331 A-LAQENVFGCLCNLVSDDESLKLLIV--REGGIGSLKSYWDSVSAVKSLEVAVELLSQLA-SC-LPIAEVLVSDGFVVR 405 (561)
Q Consensus 331 ~-~~~~~a~~~L~~L~~~~~~~r~~~~--~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~-~~-~~~~~~l~~~~~i~~ 405 (561)
. ..+..|+--+..|+... ++.+. -...||.|.++=.+++ ..++ .++.-||+-- .. ....+... ...++-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~-~~Vq-~aM~sIW~~Li~D~k~~vd~y~-neIl~e 1043 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPD-KKVQ-DAMTSIWNALITDSKKVVDEYL-NEILDE 1043 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCc-HHHH-HHHHHHHHHhccChHHHHHHHH-HHHHHH
Confidence 2 45555655555555432 11111 1124555655554433 3444 5666666644 33 23333322 246677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHhCCChHHHHHhccCCCHHHHHHHH---HHHHHhhccccchhhH
Q 008560 406 LVNVLNCGVLSVRIAAARAVSMLGIN---SKARKEMGECGCIGPLIKMLDGKAVEEKESAA---KALSTLMLYAGNRKIL 479 (561)
Q Consensus 406 Lv~lL~~~~~~~~~~A~~aL~~L~~~---~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~---~aL~~L~~~~~~~~~~ 479 (561)
|+.-|.+....+|+.++.||..|-.. ++..+.+-+ ....+...+.+=-+.+|+.|- .+|..|+....+...-
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 77777888899999999999999974 345555532 344445555544455666544 4444444111100000
Q ss_pred hhcCCCHHHHHH-hccCC---ccchhhHHHHHHHHHhcCCchH
Q 008560 480 RKDERGIVTVVQ-LLDPL---IQNLDKKYPVAILAALVHCRKC 518 (561)
Q Consensus 480 ~~~~~~i~~Lv~-lL~~~---~~~~~k~~a~~~L~~La~~~~~ 518 (561)
......+..++- +|+++ .-...++++++.++.|+.+...
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 011112333333 33444 2234567899999999854443
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.01 E-value=9.6 Score=43.07 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=110.4
Q ss_pred HHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHH--HHHHHhcCCCH-H
Q 008560 340 CLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVV--RLVNVLNCGVL-S 416 (561)
Q Consensus 340 ~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~--~Lv~lL~~~~~-~ 416 (561)
+|++++...+..++.+.+.||+..+.+.++.......+..+++.+.+++...+.++.......+. ..-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 88899999999999999999999999999987667899999999999997555444333222222 22223433333 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc-cccchhhHhhcCCCHHH-HHHhcc
Q 008560 417 VRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML-YAGNRKILRKDERGIVT-VVQLLD 494 (561)
Q Consensus 417 ~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~i~~-Lv~lL~ 494 (561)
....|+.+|..+..+.+- ..+.+.-+ .+.+.+..... .......+..+ ..+.+ +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~---------------~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRN---------------SVNELLVEAISRWLTSEIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchH---------------HHHHHHHHHhhccCccceeehhh-hhcchhHHHHhc
Confidence 677787777777653221 11112222 22222222221 11111112111 23333 445554
Q ss_pred CCccchhhHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccC
Q 008560 495 PLIQNLDKKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMD 538 (561)
Q Consensus 495 ~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~ 538 (561)
..........|++++.++. ..++..+.+...|+++.+.++-...
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLS 679 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhH
Confidence 4433344567888888887 6777888899999999888775433
No 161
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.96 E-value=6.4 Score=38.14 Aligned_cols=243 Identities=18% Similarity=0.146 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHH
Q 008560 163 SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIR 242 (561)
Q Consensus 163 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~ 242 (561)
....+.+|+..|..+... +.+..+.+...+.+.......+-+|. ++..+. +++.|+.
T Consensus 18 ~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~Lg----------Q~~~~~--Av~~l~~ 74 (289)
T KOG0567|consen 18 PLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLG----------QMQDED--AVPVLVE 74 (289)
T ss_pred HHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhh----------hhccch--hhHHHHH
Confidence 345667777777665432 22444444444433333333333443 333455 9999999
Q ss_pred HHhcC--CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhH-----HH--
Q 008560 243 VLESG--SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKE-----NF-- 313 (561)
Q Consensus 243 lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~-----~i-- 313 (561)
+|... .+-+|..|+.+|.++. .+ ...+.|-+..++....+++.+..++..+-.....-. ..
T Consensus 75 vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S 144 (289)
T KOG0567|consen 75 VLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS 144 (289)
T ss_pred HhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc
Confidence 99765 5678889999998875 32 234444444545555666667777776632211000 00
Q ss_pred ------HhhhhHHHHHHHhhcCCHH--HHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 314 ------IEENAVMVLLGLVASGTAL--AQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 314 ------~~~g~v~~Lv~lL~~~~~~--~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
...+-|..+-..|.+.+.. -++.|.-.|.|+-.. ..|..+.+-+..+ +.-.+..+.-+++
T Consensus 145 vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E-----------eaI~al~~~l~~~-SalfrhEvAfVfG 212 (289)
T KOG0567|consen 145 VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE-----------EAINALIDGLADD-SALFRHEVAFVFG 212 (289)
T ss_pred CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH-----------HHHHHHHHhcccc-hHHHHHHHHHHHh
Confidence 1122233444434333321 122333333333111 1133333333333 3355555666666
Q ss_pred HhhcChhhHHHHHhcchHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 008560 386 QLASCLPIAEVLVSDGFVVRLVNVLNC--GVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAA 463 (561)
Q Consensus 386 ~L~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~ 463 (561)
.|-+ .-.|+.|.+.|.. .++-++-.|+.+|..++. ..+++.|.+.+.+..+-+++.+.
T Consensus 213 Ql~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 213 QLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCE 272 (289)
T ss_pred hccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHH
Confidence 5532 2357888887754 467899999999998874 44577888888888888888887
Q ss_pred HHHHHhh
Q 008560 464 KALSTLM 470 (561)
Q Consensus 464 ~aL~~L~ 470 (561)
.+|-.+-
T Consensus 273 valdm~e 279 (289)
T KOG0567|consen 273 VALDMLE 279 (289)
T ss_pred HHHHHHH
Confidence 7776554
No 162
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.93 E-value=0.17 Score=42.88 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=58.3
Q ss_pred HhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008560 150 AESRNLITRLQ-IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVS 220 (561)
Q Consensus 150 ~~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La 220 (561)
..++.|+..|. +.++....-|+..|..+++..|..+..+.+-|+-..+..++.++|++++.+|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45778888884 456667778999999999999988888878899999999999999999999999987653
No 163
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.92 E-value=2.4 Score=44.97 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=111.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCCh----HHHHHHHHHHHHhhCCchhhH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTP----GSQAFAAGVLRNLAGFSEIKE 311 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~----~~~~~A~~aL~nLs~~~~~r~ 311 (561)
....+..++.+|+...+..+..-|.+++.+......+....++..|..++.+++. .....++.++..+-...-..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566778889999999999999999999998889999999999999999998865 333455555544422211111
Q ss_pred HHHhhhhHHHHHHHhh--cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 312 NFIEENAVMVLLGLVA--SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
..+...+|...+.+.+ ..+..+-..|+..|.++..+++..+..+.++--++.|+..++..+. .++..|...+-.+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~-~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ-RIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch-HHHHHHHHHHHHHHh
Confidence 1122233333444432 2334677889999999999988888888899999999999998765 566667777766653
Q ss_pred -Chh
Q 008560 390 -CLP 392 (561)
Q Consensus 390 -~~~ 392 (561)
+++
T Consensus 243 ~a~~ 246 (713)
T KOG2999|consen 243 KAPD 246 (713)
T ss_pred hCCh
Confidence 443
No 164
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.91 E-value=1 Score=41.69 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=65.2
Q ss_pred HHHHHHHhCcHHHHHHhhhc--------CCCHHHHHHHHHHHHHhhcChhhHHHHHhc-chHHHHHHHhcCCCHHHHHHH
Q 008560 351 LKLLIVREGGIGSLKSYWDS--------VSAVKSLEVAVELLSQLASCLPIAEVLVSD-GFVVRLVNVLNCGVLSVRIAA 421 (561)
Q Consensus 351 ~r~~~~~~g~i~~Lv~lL~~--------~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~A 421 (561)
--+.+++.||+..|+++|.. ..+......++.+|..+..+..|...+.++ +++..++..|.+.+..++..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 34567788999999998854 234467888999999999999999999986 899999999999999999999
Q ss_pred HHHHHHHc
Q 008560 422 ARAVSMLG 429 (561)
Q Consensus 422 ~~aL~~L~ 429 (561)
..+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.91 E-value=8.4 Score=39.31 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=143.6
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhH-----HHHh--hhhHHHHHHHhhcCCHHHHHHHHHHH
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKE-----NFIE--ENAVMVLLGLVASGTALAQENVFGCL 341 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~-----~i~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L 341 (561)
..+..++.+..|+..+..-+-+.++.+..+..++-... +.+. .+.+ ..++..|+.-- +++++-..+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHH
Confidence 35566788999999999999999999999999987654 3322 2221 12333333322 2345667777788
Q ss_pred HHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh-cChhhHHHHHhc---chHHHHHHHhcCCCHHH
Q 008560 342 CNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA-SCLPIAEVLVSD---GFVVRLVNVLNCGVLSV 417 (561)
Q Consensus 342 ~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~-~~~~~~~~l~~~---~~i~~Lv~lL~~~~~~~ 417 (561)
..+...+ .+.+.+.....+..+.++++.++- ++..-|...+..+- .++......... .++.....+|.+++..+
T Consensus 148 Rec~k~e-~l~~~iL~~~~f~~ff~~~~~~~F-diasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHE-SLAKIILYSECFWKFFKYVQLPNF-DIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSH-HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhhH-HHHHHHhCcHHHHHHHHHhcCCcc-HhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 8877764 456677777788888888887553 67777777777754 577776666654 56888888999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhH
Q 008560 418 RIAAARAVSMLGINSKARKEMG----ECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKIL 479 (561)
Q Consensus 418 ~~~A~~aL~~L~~~~~~~~~i~----~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 479 (561)
+..+...|..|-.+..+...|. +..-+..++.+|++++..+|..|-.++.....++..-+.+
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 9999999999998766655443 3345788888999999999999999999888776554444
No 166
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.89 E-value=11 Score=42.63 Aligned_cols=230 Identities=16% Similarity=0.125 Sum_probs=130.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CchH
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS--KENA 269 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~ 269 (561)
-+.+.++...+.++..++.........+...=+. ...... -+++....++....+.+...+.-...++.. .++.
T Consensus 316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~--~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQ--LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCccc--chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 4456666666666666666555555544321000 111112 567777888887888888888887777664 3455
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
..+.....++.+-.++.+.+..++...+....++...-. +..-+ .-..+.++..+++....++.+....+..+-..++
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~ 469 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND 469 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccC
Confidence 566666678888888888888888888887777754322 11111 1245566667777777777777765554443333
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
...........++.+..+-.... .+++...+..+..++.... ..+.....-+.+...+.+....+++.|+..+..++
T Consensus 470 v~g~~~~s~slLp~i~el~~d~~-wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 470 VIGISTVSNSLLPAIVELAEDLL-WRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred cccchhhhhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 22333333444444444443332 3566666666666664222 22222222333333444445577777777777666
Q ss_pred C
Q 008560 430 I 430 (561)
Q Consensus 430 ~ 430 (561)
.
T Consensus 547 ~ 547 (759)
T KOG0211|consen 547 E 547 (759)
T ss_pred H
Confidence 4
No 167
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.029 Score=52.94 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=67.6
Q ss_pred hhhHHHHHHhhhHhhhcccC------CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHH
Q 008560 32 KWVIVKTKLNDLETQLKDFS------DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAK 105 (561)
Q Consensus 32 ~~~~~~~~~~~l~~~l~~~~------~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~ 105 (561)
.|+.....+.+|..+.+.++ ++|.+--+-|+.+||++ ||....|+|| ||..|+..
T Consensus 181 ~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~----------pvi~psgIty---------~ra~I~Eh 241 (284)
T KOG4642|consen 181 IEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMRE----------PVITPSGITY---------DRADIEEH 241 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcC----------CccCccccch---------hHHHHHHH
Confidence 34555556666666665555 89999999999999996 6999999999 99999999
Q ss_pred hhhhhcchhHHHhccCCCCCccccccccccccc
Q 008560 106 LDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGV 138 (561)
Q Consensus 106 l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li 138 (561)
|..--+-=| +|.-+|++ ..+|||..+.-.|
T Consensus 242 l~rvghfdp--vtr~~Lte-~q~ipN~alkevI 271 (284)
T KOG4642|consen 242 LQRVGHFDP--VTRWPLTE-YQLIPNLALKEVI 271 (284)
T ss_pred HHHhccCCc--hhcccCCH-HhhccchHHHHHH
Confidence 988666668 88888884 5799999886544
No 168
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=5.3 Score=46.32 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=136.6
Q ss_pred cCChHHHHHh----hcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 008560 191 QGVVPVLVKL----MDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK 266 (561)
Q Consensus 191 ~g~v~~Lv~l----L~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 266 (561)
++.|..+..+ .++.++.+|..+-.+|..+...+.........-.+....|...+++.+...+.....+|..|-...
T Consensus 649 e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~ 728 (1176)
T KOG1248|consen 649 ESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL 728 (1176)
T ss_pred chhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 3555554422 233468899999999999987755544443332236667777777777777777777777775532
Q ss_pred --chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhh------hHHHHHHHhhcC--CHHHHHH
Q 008560 267 --ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEEN------AVMVLLGLVASG--TALAQEN 336 (561)
Q Consensus 267 --~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g------~v~~Lv~lL~~~--~~~~~~~ 336 (561)
+....+.. .|+.++-.+++.+...++.|..+|..++. -....+.| .+..++..+..+ .+..+..
T Consensus 729 ~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~ 802 (1176)
T KOG1248|consen 729 SAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVV 802 (1176)
T ss_pred cHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHH
Confidence 33333322 24444444477788899999999998873 11112222 666666666544 2222222
Q ss_pred HH--HHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc---CCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHh
Q 008560 337 VF--GCLCNLVSDDESLKLLIVREGGIGSLKSYWDS---VSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVL 410 (561)
Q Consensus 337 a~--~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~---~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL 410 (561)
+. -++..+.... ..+...+.++.++..+.. +..+++...|++.+..++. .|+..-.-.....++.+..++
T Consensus 803 as~Ivai~~il~e~----~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls 878 (1176)
T KOG1248|consen 803 ASDIVAITHILQEF----KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS 878 (1176)
T ss_pred HHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH
Confidence 22 2222222211 112222334444444332 3456999999999999996 666543333334678888888
Q ss_pred cCCCHHHHHHHHHHHHHHcC
Q 008560 411 NCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 411 ~~~~~~~~~~A~~aL~~L~~ 430 (561)
+.....++...-..|-.|+.
T Consensus 879 ~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 879 HDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 87777888877777777764
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=5.5 Score=46.18 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHhc--CCHHHHHHHHhcCChHHHHHHHHHHHHhhCC--chhhHHHHhhhhHHHH
Q 008560 247 GSGFAKERACVALQALSFSKENARAIGSR--GGISSLLEICQAGTPGSQAFAAGVLRNLAGF--SEIKENFIEENAVMVL 322 (561)
Q Consensus 247 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~--~~~r~~i~~~g~v~~L 322 (561)
.+..+|..+-++|..++..+.......++ .....|..-.++-....+...+.+|..|-.. .++...+ . ..|+.+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~-k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-P-KLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-H-HHHHHH
Confidence 36788999999999998875444333331 2233444444444455555555555555332 2333332 2 234444
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHH------hCcHHHHHHhhhcC--CCHHHHHHH--HHHHHHhhc-Ch
Q 008560 323 LGLVASGTALAQENVFGCLCNLVSDDESLKLLIVR------EGGIGSLKSYWDSV--SAVKSLEVA--VELLSQLAS-CL 391 (561)
Q Consensus 323 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~------~g~i~~Lv~lL~~~--~~~~~~e~a--~~aL~~L~~-~~ 391 (561)
+-.+...+...+.+|..+|..|+. -....+ ...+...+.++..+ .+ ..+-.+ +-++..+.. +.
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHh
Confidence 444477777889999999999883 011111 12455566555443 21 222222 334444432 22
Q ss_pred hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-H-HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 008560 392 PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-S-KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTL 469 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~-~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L 469 (561)
.....-.=.+.+..+..+|.+++.++...|+..+..++.. + .+..... .-.++.+..+.++....++.+...+|-.|
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2111111135567777788899999999999999988873 3 3322222 23578888888877888888888888777
Q ss_pred hc
Q 008560 470 ML 471 (561)
Q Consensus 470 ~~ 471 (561)
..
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 64
No 170
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.65 E-value=1.3 Score=43.05 Aligned_cols=96 Identities=11% Similarity=0.203 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhcc
Q 008560 376 SLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLD 452 (561)
Q Consensus 376 ~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~ 452 (561)
....|+.+|.-+|- +|..+..+.+...+..++.+|. ...+.++.++..+|..+.- ++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567789999996 9999999998999999999994 4567888888888887776 7899999999999999999999
Q ss_pred C--CCHHHHHHHHHHHHHhhc
Q 008560 453 G--KAVEEKESAAKALSTLML 471 (561)
Q Consensus 453 ~--~~~~v~~~A~~aL~~L~~ 471 (561)
+ -+.+++.+..+.|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 5 467788888888776553
No 171
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.57 E-value=6.4 Score=40.22 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=118.4
Q ss_pred HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC-CChHHHHHHHHh-C-cHHHHHHhhhcC-----CC-------HHH
Q 008560 312 NFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS-DDESLKLLIVRE-G-GIGSLKSYWDSV-----SA-------VKS 376 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~r~~~~~~-g-~i~~Lv~lL~~~-----~~-------~~~ 376 (561)
.+.+.. +..+...|.+........++..|.++.. .+....+.+.+. . ..+.+.+++... .. +.+
T Consensus 52 ~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence 344443 7778888888888888899999999998 554555555543 2 244566666331 10 168
Q ss_pred HHHHHHHHHHhhc--ChhhHHHHHhc-chHHHHHHHhcCCCHHHHHHHHHHHHH-HcCC----HHHHHHHHhCCChHHHH
Q 008560 377 LEVAVELLSQLAS--CLPIAEVLVSD-GFVVRLVNVLNCGVLSVRIAAARAVSM-LGIN----SKARKEMGECGCIGPLI 448 (561)
Q Consensus 377 ~e~a~~aL~~L~~--~~~~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~-L~~~----~~~~~~i~~~g~i~~Lv 448 (561)
|...+..+..+.. .+..+..+.+. +.+..+.+-|..++.++......+|+. +..+ ...+-.+.....+..|.
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~ 210 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLA 210 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHH
Confidence 8888888888775 66677777775 779999999988888988888888885 4443 34556666777899999
Q ss_pred HhccCCCH----HHHHHHHHHHHHhhccccc
Q 008560 449 KMLDGKAV----EEKESAAKALSTLMLYAGN 475 (561)
Q Consensus 449 ~ll~~~~~----~v~~~A~~aL~~L~~~~~~ 475 (561)
.+....++ .+.+.+-+.|..++.++.+
T Consensus 211 ~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 211 SLYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 98776555 8899999999999865543
No 172
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.43 E-value=0.0043 Score=45.35 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=27.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHh--hhcCCCCCCCcchhhhhHHHHHHHh-hhhhcchh
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQ--KCQGVSLTEGKLKTQSDIDSVLAKL-DRHVRDGD 114 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~--~c~~~~y~~g~l~~~sd~~~i~~~l-~~~~~~cp 114 (561)
.-+.|||+...+++ ||+ +| |++| |+++|..|| ..+...||
T Consensus 10 ~~~~CPiT~~~~~~----------PV~s~~C-~H~f---------ek~aI~~~i~~~~~~~CP 52 (57)
T PF11789_consen 10 ISLKCPITLQPFED----------PVKSKKC-GHTF---------EKEAILQYIQRNGSKRCP 52 (57)
T ss_dssp --SB-TTTSSB-SS----------EEEESSS---EE---------EHHHHHHHCTTTS-EE-S
T ss_pred eccCCCCcCChhhC----------CcCcCCC-CCee---------cHHHHHHHHHhcCCCCCC
Confidence 35899999999997 455 56 8999 999999999 55688899
No 173
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.34 E-value=1.6 Score=42.41 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhC-CchhhHHHHhhhhHHHHHHHhh-cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc
Q 008560 293 QAFAAGVLRNLAG-FSEIKENFIEENAVMVLLGLVA-SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS 370 (561)
Q Consensus 293 ~~~A~~aL~nLs~-~~~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~ 370 (561)
...|+.+|.-++. ++..|..+.+...+..|+++|. .....++..++.+|..+..+++.+.+.+.+.+|+..++.+++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4557788888775 5688889999999999999995 4556899999999999999999899999999999999999987
Q ss_pred C-CCHHHHHHHHHHHHHhhc
Q 008560 371 V-SAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 371 ~-~~~~~~e~a~~aL~~L~~ 389 (561)
. .+.+++-+++..|.....
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 3 455777777777776654
No 174
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.34 E-value=3.4 Score=47.85 Aligned_cols=255 Identities=18% Similarity=0.051 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC-C---chhhHHHHhhhhHHH
Q 008560 248 SGFAKERACVALQALSFS--KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG-F---SEIKENFIEENAVMV 321 (561)
Q Consensus 248 ~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~-~---~~~r~~i~~~g~v~~ 321 (561)
....+..|...|..|+.. ++++- ..++|.++.++.+..+.++..|+.+|..+-. . +..-..+--+=.+|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 567788999999999874 33332 2368999999999999999999999987643 2 222233334446777
Q ss_pred HHHHhhc-CCHHHHHHHHHHHHHhcCCChHHHH---HHHHh------------------------CcHHHHHHhhhcCCC
Q 008560 322 LLGLVAS-GTALAQENVFGCLCNLVSDDESLKL---LIVRE------------------------GGIGSLKSYWDSVSA 373 (561)
Q Consensus 322 Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~r~---~~~~~------------------------g~i~~Lv~lL~~~~~ 373 (561)
|-.++.+ ....++..=+.+|..|+...-.+-. .+-.. ..|+.++.-|-.+++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 8888877 4445666556666665532211000 00000 123333333333444
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccC
Q 008560 374 VKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDG 453 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~ 453 (561)
+-++..-+..|.-||.+-.- +. .+.-.+..|+.+|.+.+..++-.=..-+.-+|.- .-..-++++.+|.|.+-+.+
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk-~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~--VG~rs~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGK-EK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF--VGWRSVSEYLLPLLQQGLTD 667 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhh-cc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEE--EeeeeHHHHHHHHHHHhccC
Confidence 56777777778888852110 00 0123578888888887766654433333323221 01111345668999999999
Q ss_pred CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 454 KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 454 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
..+-|-..|.++|..|+...--++..+.+ -+....-+|-+ ++.=.+..+++++...+
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~h-PN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCH-PNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeC-chHHHHHHHHHHHHHHH
Confidence 99999999999999999776666655443 23333334433 23334556778777665
No 175
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.14 E-value=6.2 Score=39.66 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=95.0
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc--h
Q 008560 192 GVVPVLV-KLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE--N 268 (561)
Q Consensus 192 g~v~~Lv-~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~ 268 (561)
+.+..|+ .-+.+.++.+|+.|+.+|+..+.-+. .+.. . .++.+.+.++.++..++..|..++..+..... .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-E--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-H--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4444444 56778889999999999999886553 2222 2 57778888888899999999999998865432 1
Q ss_pred HHH-------HHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcC----CHHHHHHH
Q 008560 269 ARA-------IGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASG----TALAQENV 337 (561)
Q Consensus 269 ~~~-------i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~----~~~~~~~a 337 (561)
-.. ......+..+.+.+.+.+++.+..|+..+..|-....... ...++..|+-+--++ +..++..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 111 1223457777888888888999999999988866543332 133444444433222 22334433
Q ss_pred HHHHHHhcCCCh
Q 008560 338 FGCLCNLVSDDE 349 (561)
Q Consensus 338 ~~~L~~L~~~~~ 349 (561)
..++-..+..+.
T Consensus 177 ~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 177 SVFFPVYASSSP 188 (298)
T ss_pred HHHHHHHHcCCH
Confidence 444444444444
No 176
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.10 E-value=1.4 Score=39.78 Aligned_cols=142 Identities=19% Similarity=0.174 Sum_probs=89.1
Q ss_pred HHHHHhh--cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 008560 321 VLLGLVA--SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVL 397 (561)
Q Consensus 321 ~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l 397 (561)
.++..|. ..+++++..+.-++..+- +..+.. ...-.-+.+-..+.... .+....++.++..+-. .++....+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444443 345577888888877772 222222 11112222222222222 2456667777777664 66666666
Q ss_pred Hh-cchHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCCHH-HHHHHHHHHHH
Q 008560 398 VS-DGFVVRLVNVLN--CGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKAVE-EKESAAKALST 468 (561)
Q Consensus 398 ~~-~~~i~~Lv~lL~--~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~-v~~~A~~aL~~ 468 (561)
.. .|+++.++.++. ..+..++..++.+|..=|.+..++..+.+. +++.|-.+.+ ++++. +|..|+-.|+.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 64 599999999998 677888888888888777777777777665 5889999996 55565 78888777764
No 177
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.07 E-value=2.2 Score=45.24 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=109.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH----HHHHHHHHHHHHhcCCChHHHH
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTA----LAQENVFGCLCNLVSDDESLKL 353 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~~r~ 353 (561)
...+.+++.++++..+..|...|..++.+...-..++...++..|..++.++.. .+...++.++..+-...- .-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 456777888898888888999999999999888999999999999999988765 344444444444432211 000
Q ss_pred HHHHhCcHHHHHHhhhc-CCCHHHHHHHHHHHHHhhcCh-hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-
Q 008560 354 LIVREGGIGSLKSYWDS-VSAVKSLEVAVELLSQLASCL-PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI- 430 (561)
Q Consensus 354 ~~~~~g~i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~- 430 (561)
..+...+|.....+..- -.+..+...|+..|.++..+. ..+..+.++--++.|+..++..+..++.+|...+..+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 11111223333333321 122357788999999998744 466777777889999999999999999988777777654
Q ss_pred -CHHHHHHHH
Q 008560 431 -NSKARKEMG 439 (561)
Q Consensus 431 -~~~~~~~i~ 439 (561)
.++-++.+.
T Consensus 244 a~~~~R~~~~ 253 (713)
T KOG2999|consen 244 APDDKRFEMA 253 (713)
T ss_pred CChHHHHHHH
Confidence 344444443
No 178
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.95 E-value=0.85 Score=37.45 Aligned_cols=90 Identities=12% Similarity=0.218 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--hchhhHHHHHHHH
Q 008560 167 KNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIA--EGLLLLNHLIRVL 244 (561)
Q Consensus 167 ~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~--~g~~~i~~Lv~lL 244 (561)
|..++..|...+..-.+.... .-.-.+++++..+.+++..+|..|+.+|.+++..- +..+.. .. .++.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~-~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~--IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISK-YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNE--IFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHH
Confidence 444555555554433222111 12467899999999999999999999999998543 233332 44 888899999
Q ss_pred hcCCHHHHHHHHHHHHHh
Q 008560 245 ESGSGFAKERACVALQAL 262 (561)
Q Consensus 245 ~~~~~~~~~~aa~~L~~L 262 (561)
...++.+|..| ..|-+|
T Consensus 78 ~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRL 94 (97)
T ss_pred cCCchhHHHHH-HHHHHH
Confidence 88888877655 555444
No 179
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.94 E-value=12 Score=42.14 Aligned_cols=308 Identities=16% Similarity=0.122 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH------HhchhhHHHHH
Q 008560 168 NSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI------AEGLLLLNHLI 241 (561)
Q Consensus 168 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~------~~g~~~i~~Lv 241 (561)
-++++-|..|+..+ +....+++.|+|..|+..=.-+ +.-.-.-.+|+.++...+.-+.+- -.. ++..-+
T Consensus 371 ~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~--vv~~~~ 445 (1516)
T KOG1832|consen 371 PDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQ--VVKLAI 445 (1516)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHH--HHHHHH
Confidence 45666666666543 4556677888887776642211 222223346777776654433322 233 566667
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCC-----------hH--------HHHHHHHHHH
Q 008560 242 RVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGT-----------PG--------SQAFAAGVLR 301 (561)
Q Consensus 242 ~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----------~~--------~~~~A~~aL~ 301 (561)
++|+......+.+++.... .+.. ...-..+-...+++.|+.++++.. ++ .....+-+|+
T Consensus 446 ~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR 524 (1516)
T KOG1832|consen 446 ELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALR 524 (1516)
T ss_pred HHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHH
Confidence 7887766555555554332 2222 223344555678888888876410 11 1123333443
Q ss_pred Hh-----h-CCchhhHHHHhhhhHHHHHHHhhcCCH--H----HHHHHHHHHHHhcCCChH-------HHHHHHHhCcHH
Q 008560 302 NL-----A-GFSEIKENFIEENAVMVLLGLVASGTA--L----AQENVFGCLCNLVSDDES-------LKLLIVREGGIG 362 (561)
Q Consensus 302 nL-----s-~~~~~r~~i~~~g~v~~Lv~lL~~~~~--~----~~~~a~~~L~~L~~~~~~-------~r~~~~~~g~i~ 362 (561)
.- . ..+.++..-...|.+...+.-+..+.. . ..+...+-+..+-...+. --+.+.+.+++.
T Consensus 525 ~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~ 604 (1516)
T KOG1832|consen 525 QYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVV 604 (1516)
T ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHH
Confidence 22 1 122334444444555554443322211 1 112222222222111110 123455677888
Q ss_pred HHHHhhhcCCC-------HHHHHHHHHHHHHhhcChhhHHHHHhc--------chHHHHHHHhc----CCCHHHHHHHHH
Q 008560 363 SLKSYWDSVSA-------VKSLEVAVELLSQLASCLPIAEVLVSD--------GFVVRLVNVLN----CGVLSVRIAAAR 423 (561)
Q Consensus 363 ~Lv~lL~~~~~-------~~~~e~a~~aL~~L~~~~~~~~~l~~~--------~~i~~Lv~lL~----~~~~~~~~~A~~ 423 (561)
.++.+...... .+....|+.+|..+..-|.++.++... .++..++..-. -.++++++.|..
T Consensus 605 ~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~ 684 (1516)
T KOG1832|consen 605 TMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALN 684 (1516)
T ss_pred HHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHh
Confidence 88888765321 356667777777777788887776642 13333333221 126799999999
Q ss_pred HHHHHcCCH-HHH-----------------------------------HHHHhCCChHHHHHhccCC-----CHHHHHHH
Q 008560 424 AVSMLGINS-KAR-----------------------------------KEMGECGCIGPLIKMLDGK-----AVEEKESA 462 (561)
Q Consensus 424 aL~~L~~~~-~~~-----------------------------------~~i~~~g~i~~Lv~ll~~~-----~~~v~~~A 462 (561)
++.|+.+.+ +++ .++....+|..|++|++-+ .+.+|.-|
T Consensus 685 vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalA 764 (1516)
T KOG1832|consen 685 VIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALA 764 (1516)
T ss_pred hhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHH
Confidence 999887621 221 2334467899999999833 45689999
Q ss_pred HHHHHHhhccccchhhHhh
Q 008560 463 AKALSTLMLYAGNRKILRK 481 (561)
Q Consensus 463 ~~aL~~L~~~~~~~~~~~~ 481 (561)
+.+|.-|+.++.-|+.+.+
T Consensus 765 c~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 765 CRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred HHHHhccccCcHHHHHHHh
Confidence 9999999999998888754
No 180
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.53 E-value=3.1 Score=45.12 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHH
Q 008560 246 SGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLL 323 (561)
Q Consensus 246 ~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv 323 (561)
+|+.+.+.-|+..+...... ++.... ++..++++|.+.+..++..|.+.|..+|.+. +...+ ++.+|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHH
Confidence 37899999999999988765 454443 6889999999999999999999999999874 55544 567899
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc--CCCHHHHHHHHHHHH
Q 008560 324 GLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS--VSAVKSLEVAVELLS 385 (561)
Q Consensus 324 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~--~~~~~~~e~a~~aL~ 385 (561)
++|..++..-....-.+|..+-..++. +.+..+..-+.. ..+..+++.++..|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 999988765444444444444433331 223333333321 123356777666553
No 181
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.30 E-value=9.1 Score=35.19 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHH
Q 008560 163 SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIR 242 (561)
Q Consensus 163 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~ 242 (561)
++..|..++..+..++..-+... +..++.+...|.++++.+|..|+.+|..|...+-.+. .| ..+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~-~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KG-QLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hh-hhhHHHHH
Confidence 35678888999988887554322 4568889999999999999999999999876543221 23 14478888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCC
Q 008560 243 VLESGSGFAKERACVALQALSFS 265 (561)
Q Consensus 243 lL~~~~~~~~~~aa~~L~~Ls~~ 265 (561)
.+.+.+++++..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998776
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.24 E-value=0.98 Score=34.85 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHhCC
Q 008560 377 LEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNC-GVLSVRIAAARAVSMLGINSKARKEMGECG 442 (561)
Q Consensus 377 ~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g 442 (561)
...++.+++++++.+.+.+.+.+.++++.++++... ....+|--|..+|.-++.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 467999999999999999988888999999998864 456899999999999999998888887776
No 183
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.73 E-value=1.4 Score=40.72 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=78.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hhHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHHHh
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDK-NVVIAVAQGVVPVLVKLMDS---------SSLEMKEKTVASIARVS 220 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~---------~~~~~~e~a~~~L~~La 220 (561)
....++..++.+.... +.+..|...++.++. -...+++.||+..|+.+|.. .+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455677776654332 556666666665543 34566788999999998852 34578889999999998
Q ss_pred cCCcchHHHHH-hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008560 221 MVDSSKHVLIA-EGLLLLNHLIRVLESGSGFAKERACVALQALS 263 (561)
Q Consensus 221 ~~~~~~~~i~~-~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 263 (561)
.+......+++ .+ ++..|+..|.+.+..++..+..+|..++
T Consensus 145 n~~~G~~~v~~~~~--~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPD--SVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSS--HHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcH--HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 87766666665 67 9999999999999999999999998775
No 184
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.72 E-value=0.98 Score=40.74 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=88.7
Q ss_pred HHHHHHhhhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHH-HHHH
Q 008560 361 IGSLKSYWDS-VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSK-ARKE 437 (561)
Q Consensus 361 i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~-~~~~ 437 (561)
++.++..|.. ..++.++-.+.-++..+- +..++...+ .+-+-+-.++..++.+....+..++..+-- .++ ....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455666654 344478888888887773 222222211 112222234444333456667777777765 455 4555
Q ss_pred HHhCCChHHHHHhcc--CCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccch-hhHHHHHHHH
Q 008560 438 MGECGCIGPLIKMLD--GKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNL-DKKYPVAILA 510 (561)
Q Consensus 438 i~~~g~i~~Lv~ll~--~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~k~~a~~~L~ 510 (561)
+...|.++.++.++. .++..++..++++|..=+.+..-|..+.. .+++.|-+++..+.+.. .|-.|+-+|+
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 667799999999998 78888899999988776666666665543 59999999996543322 3444444443
No 185
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.60 E-value=11 Score=34.65 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh
Q 008560 248 SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA 327 (561)
Q Consensus 248 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~ 327 (561)
++.+|.++..++.-|+....+- .+ ..++.+...|.+.++.+++.|+.+|.+|...+-.+.+ ...+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 3578889999998887653321 11 2478888999999999999999999999876533322 223477888889
Q ss_pred cCCHHHHHHHHHHHHHhcCC
Q 008560 328 SGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 328 ~~~~~~~~~a~~~L~~L~~~ 347 (561)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 186
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=16 Score=41.21 Aligned_cols=327 Identities=13% Similarity=0.090 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh------cCCHHH
Q 008560 207 EMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS------RGGISS 280 (561)
Q Consensus 207 ~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~------~g~i~~ 280 (561)
-+.-.++..|+.|+.+......+++.| ++..|+.+=. ..+.-.....+|..|+.....-+.++. +.++..
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~--gi~kll~vpr--~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~ 443 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERR--GILKLLAVPR--VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKL 443 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhh--hhHHHhcCCC--chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHH
Confidence 345567788888888888888889988 8877765532 223344556677777776554444443 223333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHhhcC--------CH-----------HHHHHHHHH
Q 008560 281 LLEICQAGTPGSQAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLVASG--------TA-----------LAQENVFGC 340 (561)
Q Consensus 281 Lv~ll~~~~~~~~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL~~~--------~~-----------~~~~~a~~~ 340 (561)
-+.++........+.++- .+..|.. ..+-..+-....+..|+.+++.. +. ..-...+.+
T Consensus 444 ~~~l~~cs~~~~~~~~~~-ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~a 522 (1516)
T KOG1832|consen 444 AIELLDCSQDQARKNSAL-FFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFA 522 (1516)
T ss_pred HHHHHhcchhhccchHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHH
Confidence 444554433333333322 1222221 12233333445566666665421 00 111222333
Q ss_pred HHH-----hcCCChHHHHHHHHhCcHHHHHHhhhcCCC-----HHHHHHHHHHHHHhhc-C-------hhhHHHHHhcch
Q 008560 341 LCN-----LVSDDESLKLLIVREGGIGSLKSYWDSVSA-----VKSLEVAVELLSQLAS-C-------LPIAEVLVSDGF 402 (561)
Q Consensus 341 L~~-----L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~-----~~~~e~a~~aL~~L~~-~-------~~~~~~l~~~~~ 402 (561)
|.. |...-+.++..-.+.|++...++-+..+.. .+..|..+.-+..+-. . -+..+-+...++
T Consensus 523 lR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~ 602 (1516)
T KOG1832|consen 523 LRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSG 602 (1516)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHH
Confidence 322 111123344555555666666654433211 1233333333333322 1 123455566677
Q ss_pred HHHHHHHhcCC-C-------HHHHHHHHHHHHHHcCCHHHHHHHHhC--------CChHHHHHhcc---C-CCHHHHHHH
Q 008560 403 VVRLVNVLNCG-V-------LSVRIAAARAVSMLGINSKARKEMGEC--------GCIGPLIKMLD---G-KAVEEKESA 462 (561)
Q Consensus 403 i~~Lv~lL~~~-~-------~~~~~~A~~aL~~L~~~~~~~~~i~~~--------g~i~~Lv~ll~---~-~~~~v~~~A 462 (561)
+..++++..-. + .+....|..+|+-+.+-++.++++..+ .++..++.... + -+++++..|
T Consensus 603 v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A 682 (1516)
T KOG1832|consen 603 VVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA 682 (1516)
T ss_pred HHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence 77777766432 1 245566666666666667777776532 24444444443 1 278899999
Q ss_pred HHHHHHhhccc-cchhhH----------------------------------hhcCCCHHHHHHhccCCcc-c---hhhH
Q 008560 463 AKALSTLMLYA-GNRKIL----------------------------------RKDERGIVTVVQLLDPLIQ-N---LDKK 503 (561)
Q Consensus 463 ~~aL~~L~~~~-~~~~~~----------------------------------~~~~~~i~~Lv~lL~~~~~-~---~~k~ 503 (561)
..++.++...+ .+|... ++..+||..|+.||.-..+ . ..+.
T Consensus 683 L~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRa 762 (1516)
T KOG1832|consen 683 LNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRA 762 (1516)
T ss_pred HhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHH
Confidence 99999987544 222211 3456789999999964311 1 2244
Q ss_pred HHHHHHHHhcCCchHHHHHHHcCchH--HHHHhhccC
Q 008560 504 YPVAILAALVHCRKCRKQMVAAGACL--HLRKLVEMD 538 (561)
Q Consensus 504 ~a~~~L~~La~~~~~r~~i~~~g~i~--~L~~Ll~~~ 538 (561)
.|..+|.-|+.++..|..+.+--.+. .++.|+..+
T Consensus 763 lAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~eP 799 (1516)
T KOG1832|consen 763 LACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEP 799 (1516)
T ss_pred HHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCc
Confidence 57777999999999997765544443 344454433
No 187
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=19 Score=39.94 Aligned_cols=126 Identities=17% Similarity=0.091 Sum_probs=81.9
Q ss_pred hhhHHHHHHH-hhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhH
Q 008560 316 ENAVMVLLGL-VASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIA 394 (561)
Q Consensus 316 ~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~ 394 (561)
.++|..|+.. .++.+.+++..|.-+|.-++..+++ ..+..+.+|.....+.+|.-+..+|+-.|.....+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 3566777776 5677778999999888888888774 45677788877777799999999999988754443
Q ss_pred HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHH
Q 008560 395 EVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEE 458 (561)
Q Consensus 395 ~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 458 (561)
+.+ ..+.+ +..+...=+++-|..++.-+.. ++.....+ .|+.+.+.+++.++.+..
T Consensus 624 eAi---~lLep---l~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 624 EAI---NLLEP---LTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHH---HHHhh---hhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 332 12333 3334445677777766665543 33333222 234566777776655443
No 188
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=91.13 E-value=17 Score=37.57 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=147.1
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHH---HHHHhhc-------CCHHHHHHHHHHHHHhcCC
Q 008560 279 SSLLEICQAGT-PGSQAFAAGVLRNLAGFSEIKENFIEENAVMV---LLGLVAS-------GTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 279 ~~Lv~ll~~~~-~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~---Lv~lL~~-------~~~~~~~~a~~~L~~L~~~ 347 (561)
..+++++.++. +..+..++.+++-|+.+...-.-+....-+.. +.++-.. .+..+...+..||+|+...
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45677777775 45567888999999887655444443333333 3333221 2236889999999999999
Q ss_pred ChHHHHHHHHhCcHHHHHHhhhc----CCCHHHHHHHHHHHHHhhc-ChhhHHHHHh-cchHHHHHHHhcCC--------
Q 008560 348 DESLKLLIVREGGIGSLKSYWDS----VSAVKSLEVAVELLSQLAS-CLPIAEVLVS-DGFVVRLVNVLNCG-------- 413 (561)
Q Consensus 348 ~~~~r~~~~~~g~i~~Lv~lL~~----~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~-~~~i~~Lv~lL~~~-------- 413 (561)
+...|....+......+++.+.. .........=++.|.-|.. .+..|.++.. .++++-+.++|.+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 99999988888777777766643 1222344445556655554 4566666655 48888888888531
Q ss_pred -CH------HHHHHHHHHHHHHcCCH------HHHHHHHh-CCChHHHHHhccC--CC-----------HHHHHHHHHHH
Q 008560 414 -VL------SVRIAAARAVSMLGINS------KARKEMGE-CGCIGPLIKMLDG--KA-----------VEEKESAAKAL 466 (561)
Q Consensus 414 -~~------~~~~~A~~aL~~L~~~~------~~~~~i~~-~g~i~~Lv~ll~~--~~-----------~~v~~~A~~aL 466 (561)
++ .....+..++.|+.++. ++.....- .+.....+..+.. .+ +.+..+.++++
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~ 287 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL 287 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence 11 23345667777777631 11111100 1112222222211 11 22334344433
Q ss_pred HHhhccccchhhH-hhcCCCHHHHHHhccCCccchhh-----HH---HHHHHHHhcCCchHHHHHHHcCchHHHHHhhcc
Q 008560 467 STLMLYAGNRKIL-RKDERGIVTVVQLLDPLIQNLDK-----KY---PVAILAALVHCRKCRKQMVAAGACLHLRKLVEM 537 (561)
Q Consensus 467 ~~L~~~~~~~~~~-~~~~~~i~~Lv~lL~~~~~~~~k-----~~---a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~ 537 (561)
...-.+....+.| ..+......+..+|.-......+ +. .+++|..++.+...-++.....++|+|.+.-+.
T Consensus 288 ~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPPLrDV~~R 367 (532)
T KOG4464|consen 288 AGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPPLRDVSQR 367 (532)
T ss_pred cCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCchhhhhcC
Confidence 3222222222222 22333455555566433211111 11 456677778777777788888899999988776
Q ss_pred Cccc
Q 008560 538 DIEG 541 (561)
Q Consensus 538 ~~~~ 541 (561)
+..|
T Consensus 368 PEvg 371 (532)
T KOG4464|consen 368 PEVG 371 (532)
T ss_pred cchh
Confidence 6554
No 189
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.04 E-value=8.3 Score=38.74 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHH-------HHhC
Q 008560 372 SAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKE-------MGEC 441 (561)
Q Consensus 372 ~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~-------i~~~ 441 (561)
.++.+++.++..|+-.|- +.+.. ...++.+...+..++..++..|..++..+.. ..+.... ....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 345999999999999996 33321 2345677777777789999999999999875 2221111 2234
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHH-hccCCccc-hhhHHHHHHH-HHhcCCchH
Q 008560 442 GCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQ-LLDPLIQN-LDKKYPVAIL-AALVHCRKC 518 (561)
Q Consensus 442 g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~-~~k~~a~~~L-~~La~~~~~ 518 (561)
.....+.+.+.+.+++++..|++.++.|..+..... ....+..|+- ..+|.... ..-+++++.. =..+.+...
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 567788888888899999999999999986554322 0123333333 33554222 2223355553 344666665
Q ss_pred HHHHHHcCchHHHHHhhccCcc
Q 008560 519 RKQMVAAGACLHLRKLVEMDIE 540 (561)
Q Consensus 519 r~~i~~~g~i~~L~~Ll~~~~~ 540 (561)
.+.++....++.+..+.+...+
T Consensus 190 ~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 5678888889999998877654
No 190
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=5.5 Score=44.63 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=113.1
Q ss_pred HHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHH
Q 008560 284 ICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGS 363 (561)
Q Consensus 284 ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~ 363 (561)
.+.+.-+..+..+...|+++....+-+..+-.++++....+.+.+++.-+-.+|+..+..||...+ +..++-
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 334455667889999999998877777778899999999999999998888888886666665332 356677
Q ss_pred HHHh-hhcCCC--HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 008560 364 LKSY-WDSVSA--VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKE 437 (561)
Q Consensus 364 Lv~l-L~~~~~--~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~ 437 (561)
|... ...... .+.+-..-.++.++.. -.+......+ -.+...+..+++.+...+..+..++.++|.- -.....
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 7763 332211 1333344455555553 1111111111 2334444555655566788889999999862 122334
Q ss_pred HHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhc
Q 008560 438 MGECGCIGPLIKMLD-GKAVEEKESAAKALSTLML 471 (561)
Q Consensus 438 i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~ 471 (561)
+.+ ++..++.+.+ +++..+|+.|+.++..+..
T Consensus 886 ~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 886 FHE--VLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 433 3555666666 6788899999998887764
No 191
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.89 E-value=4.2 Score=38.31 Aligned_cols=148 Identities=17% Similarity=0.096 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHH
Q 008560 252 KERACVALQALSFSKENARAIGSRGGISSLLEICQAGT-----PGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLG 324 (561)
Q Consensus 252 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~ 324 (561)
..+|...|+.++.+++.+..+.+...--.|...+...+ ...+-.+++++..|..++ .+-..+....+||.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45677788888888998888877544333333333221 234678899999998766 55666778899999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCChHH---HHHHHHhC----cHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHH
Q 008560 325 LVASGTALAQENVFGCLCNLVSDDESL---KLLIVREG----GIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVL 397 (561)
Q Consensus 325 lL~~~~~~~~~~a~~~L~~L~~~~~~~---r~~~~~~g----~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l 397 (561)
++..+++-.+..|+.++..+..+|... ++.+-+.- ++..++.-+-+..+-+....++++-..||..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 999999999999999999988877643 23232222 23333333333233367777777777777777766655
Q ss_pred Hh
Q 008560 398 VS 399 (561)
Q Consensus 398 ~~ 399 (561)
..
T Consensus 277 ~~ 278 (315)
T COG5209 277 SS 278 (315)
T ss_pred hc
Confidence 43
No 192
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.74 E-value=23 Score=36.88 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=92.8
Q ss_pred HHHH-hchhhHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHh-cC---ChHHHHHHHH
Q 008560 228 VLIA-EGLLLLNHLIRVLESG---SGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQ-AG---TPGSQAFAAG 298 (561)
Q Consensus 228 ~i~~-~g~~~i~~Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~-~~---~~~~~~~A~~ 298 (561)
.+++ .. ....|..++++. .+.+-..|+.++..+..++. +-..+.+.|.++.+++.+. .+ +.+....--.
T Consensus 100 nl~D~s~--L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~ 177 (379)
T PF06025_consen 100 NLIDSSS--LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPN 177 (379)
T ss_pred cccchhh--HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHH
Confidence 3445 44 677788888876 45677788889998888755 5556777999999999888 54 3445556667
Q ss_pred HHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH-------HHHHHHHHHHHHhcCCChHHHHHHHH
Q 008560 299 VLRNLAGFSEIKENFIEENAVMVLLGLVASGTA-------LAQENVFGCLCNLVSDDESLKLLIVR 357 (561)
Q Consensus 299 aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~-------~~~~~a~~~L~~L~~~~~~~r~~~~~ 357 (561)
+|..+|.+++..+.+.+.+.++.+++++.+.+. +.-..-...+-+|..+.+.+|..+++
T Consensus 178 ~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 178 VLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888899999999999999999999999865432 23333455566777777776665554
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.70 E-value=0.39 Score=30.13 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.8
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 444 IGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 444 i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998874
No 194
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=15 Score=40.51 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=75.2
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 008560 277 GISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIV 356 (561)
Q Consensus 277 ~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~ 356 (561)
.+..|++-..+.+..++..++..|..+.........-+-.+....+..-+.+..+.++..|+-+|..+-..+.+ -
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-----e 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-----E 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-----C
Confidence 45555555556677888889999988887554455555567777888888888889999999999998742210 0
Q ss_pred HhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 357 REGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 357 ~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
+..++..++.+++.+++++++..++..|.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 22457788889999888899987765443
No 195
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.33 E-value=1.8 Score=33.45 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcc
Q 008560 334 QENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDG 401 (561)
Q Consensus 334 ~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~ 401 (561)
...|++++.++++.+.. -..+.+.+.++.++++.+..+...+|-.|.-+|..+++..++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 45789999999987653 44455679999999999988777899999999999999999988887655
No 196
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.22 E-value=0.59 Score=29.31 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
.+|.+++++.+.++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998863
No 197
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.55 E-value=24 Score=37.24 Aligned_cols=189 Identities=14% Similarity=0.097 Sum_probs=116.3
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM-DSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
..+..++..... .++..+..++..+..++..-+..- .-...+..+..-+ ...++..+..+..++.-++ |.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----Ka 260 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWIT-----KA 260 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HH
Confidence 356666666543 456677777777777665411100 0012233333333 2334455566666665553 22
Q ss_pred HHHH---hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-Cch-------------HHHHHhcCCHHHHHHHHhcCCh
Q 008560 228 VLIA---EGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KEN-------------ARAIGSRGGISSLLEICQAGTP 290 (561)
Q Consensus 228 ~i~~---~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~-------------~~~i~~~g~i~~Lv~ll~~~~~ 290 (561)
.+++ .+.+.+..|+.+|.+ .++...+++.+.-|..+ ++. +..+.. -.+|.|++-.+..+.
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADD 337 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcCh
Confidence 2222 111257777888866 66678899998888776 321 111111 247778777777777
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHHh-hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 291 GSQAFAAGVLRNLAGFSEIKENFIE-ENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 291 ~~~~~A~~aL~nLs~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
..+.....+|.++..+-....-+-+ ...+|.+++-|..++.+++..++.+|..+...++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 7888888899888765443222223 3588999999998888999999999999988764
No 198
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.50 E-value=6.8 Score=41.07 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=96.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCh----hhHHHHHhcchHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCCH
Q 008560 364 LKSYWDSVSAVKSLEVAVELLSQLASCL----PIAEVLVSDGFVVRLVNVLNCGV-------LSVRIAAARAVSMLGINS 432 (561)
Q Consensus 364 Lv~lL~~~~~~~~~e~a~~aL~~L~~~~----~~~~~l~~~~~i~~Lv~lL~~~~-------~~~~~~A~~aL~~L~~~~ 432 (561)
+..+....+| ..+-.++-....++.+. .++..+.+.-+.+-+-+++.+++ ...+.-++.+|..+|..+
T Consensus 16 ~~~L~~~k~D-~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRD-EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccCh-HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 4555555555 67888888888888644 34666777644555555665432 355778889999999977
Q ss_pred H--HHHHHHhCCChHHHHHhccC-CCHH------HHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhH
Q 008560 433 K--ARKEMGECGCIGPLIKMLDG-KAVE------EKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKK 503 (561)
Q Consensus 433 ~--~~~~i~~~g~i~~Lv~ll~~-~~~~------v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~ 503 (561)
| ..+.|++. ||.|..++.. .++. +-+-+-++|...+.+......++. .++++.+-|+-.-++...+..
T Consensus 95 ElAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHH
Confidence 6 34556553 8999999873 2322 566788899999988888777755 589999999775544444444
Q ss_pred HHHHHH
Q 008560 504 YPVAIL 509 (561)
Q Consensus 504 ~a~~~L 509 (561)
.++-++
T Consensus 172 lal~Vl 177 (698)
T KOG2611|consen 172 LALKVL 177 (698)
T ss_pred HHHHHH
Confidence 444443
No 199
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.43 E-value=19 Score=38.03 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=108.7
Q ss_pred hHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHH-hcCChHHHHHHH----HHHHHhhCCchh
Q 008560 236 LLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISSLLEIC-QAGTPGSQAFAA----GVLRNLAGFSEI 309 (561)
Q Consensus 236 ~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~A~----~aL~nLs~~~~~ 309 (561)
.+..++.+..+. +...+..++.++..|..--..-..+ ...+..+..-. ....+..+..+. |....|..-.+
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~- 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH- 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC-
Confidence 566666665544 5777888888888776541111100 11223333322 222333333333 33333332111
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHH--------HHHHHHhC----cHHHHHHhhhcCCCHHHH
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESL--------KLLIVREG----GIGSLKSYWDSVSAVKSL 377 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~--------r~~~~~~g----~i~~Lv~lL~~~~~~~~~ 377 (561)
-.....+..|++++.+ +.+...++..+.-+..+.+.+ -+.+.+.. .+|.|++..+..++ ..+
T Consensus 267 ---~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k 340 (415)
T PF12460_consen 267 ---PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIK 340 (415)
T ss_pred ---chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhH
Confidence 1122356678888876 456777888888777763321 12333333 46666666666554 478
Q ss_pred HHHHHHHHHhhcChhhHHHHHhc--chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 378 EVAVELLSQLASCLPIAEVLVSD--GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 378 e~a~~aL~~L~~~~~~~~~l~~~--~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
...+.+|.++..+-. ...+..+ ..+|.|++-|...+..++..+..+|..+..+
T Consensus 341 ~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 341 SNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 889999999987333 2222222 5789999999988999999999999988863
No 200
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.12 E-value=1.1 Score=46.81 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhcChhhHH-HH-HhcchHHHHHHHhcC-CCHHHHHHHHHHHHHHcC
Q 008560 374 VKSLEVAVELLSQLASCLPIAE-VL-VSDGFVVRLVNVLNC-GVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~~~~~~~-~l-~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~ 430 (561)
.+++.+++.+++||-+++...- .. +..-+.+.|..++.+ .+..++.+|+.+|.--..
T Consensus 544 ~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 544 MKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 4799999999999998765411 11 111346788887754 567899999988876654
No 201
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.09 E-value=5.2 Score=39.43 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCCchHHHHHhc-C-CHHHHHHH
Q 008560 211 KTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES----GSGFAKERACVALQALSFSKENARAIGSR-G-GISSLLEI 284 (561)
Q Consensus 211 ~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-g-~i~~Lv~l 284 (561)
-++..+..+..++..-..+...+......+..++.. .++..+..+.+++.|+..++..+..+..+ + .+...+..
T Consensus 82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~ 161 (268)
T PF08324_consen 82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSS 161 (268)
T ss_dssp HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHC
T ss_pred hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHH
Confidence 344455555555544444433220023444444443 46788999999999999988888777664 3 34444443
Q ss_pred HhcC----ChHHHHHHHHHHHHhhCCc-hhh-HHHHhhhhHHHHHHHhhc--CCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 008560 285 CQAG----TPGSQAFAAGVLRNLAGFS-EIK-ENFIEENAVMVLLGLVAS--GTALAQENVFGCLCNLVSDDESLKLLIV 356 (561)
Q Consensus 285 l~~~----~~~~~~~A~~aL~nLs~~~-~~r-~~i~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~r~~~~ 356 (561)
+... +...+..++..+.|++..- ..+ ..-.....+..+++.+.. .++++...++.+|.++...++..+....
T Consensus 162 ~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 162 LLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp CCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3333 4667788889999997543 222 111122345556664432 5678999999999999987765444433
Q ss_pred HhCcHHHHHHhhhcCCCHHHHHH
Q 008560 357 REGGIGSLKSYWDSVSAVKSLEV 379 (561)
Q Consensus 357 ~~g~i~~Lv~lL~~~~~~~~~e~ 379 (561)
..|+-..+.+.-.....+++++.
T Consensus 242 ~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 242 SLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp CCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HcChHHHHHHHHhcccchHHHHH
Confidence 33444333333333333444443
No 202
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.72 E-value=1 Score=42.92 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcc-------hHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC-HH-HHHHHHhCCCh
Q 008560 375 KSLEVAVELLSQLASCLPIAEVLVSDG-------FVVRLVNVLN-CGVLSVRIAAARAVSMLGIN-SK-ARKEMGECGCI 444 (561)
Q Consensus 375 ~~~e~a~~aL~~L~~~~~~~~~l~~~~-------~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~-~~-~~~~i~~~g~i 444 (561)
..|..|+.+|+.||..+.+.+.+..++ ++..|+++|. .++...+|.|+..|.+||.. +. ++....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 578999999999998888887777653 3445555553 45678899999999999984 44 44555677999
Q ss_pred HHHHHhccCCCHH
Q 008560 445 GPLIKMLDGKAVE 457 (561)
Q Consensus 445 ~~Lv~ll~~~~~~ 457 (561)
..|+.++++....
T Consensus 219 ~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 219 SHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999854443
No 203
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.36 E-value=4.7 Score=46.67 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=103.0
Q ss_pred hHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Chh
Q 008560 318 AVMVLLGLVA----SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLP 392 (561)
Q Consensus 318 ~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~ 392 (561)
..|.+++... ..++++|..|.-+|..+..-+..++. .-++.|..++...+++.++-+++-+++-|+- +|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3444555552 34567888888888887765543332 3578899999987778999999999999995 554
Q ss_pred hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 393 IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 393 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
..+. .-+.|...|++.++.+++.|..+|.+|-.++ .+.-.|.++.+...+.+++++++..|.....-|+
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4322 3467778889999999999999999997533 3444588999999999999999999985444444
No 204
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.74 E-value=14 Score=42.24 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=117.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhc---CChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCcch
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQ---GVVPVLVKL-MDSSSLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~---g~v~~Lv~l-L~~~~~~~~e~a~~~L~~La~~~~~~ 226 (561)
....+-..+.+.++..|.+|+..+...+.+.. ..... |.+..+... +++.+..+...|+..|..++..-...
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 44556677778899999999999999887543 11223 333333332 34456677778888888887532211
Q ss_pred HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 227 HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
..=...+ +.+.+..-+...-..++.....++-...... .....++.+.+.+++++|..+..+...+-.....
T Consensus 330 ~~~~~~~--v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 330 FRKYAKN--VFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hHHHHHh--hcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 1111245 7788888887777777777766666554421 1122466777888999999887766666444332
Q ss_pred c--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 307 S--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 307 ~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
. .....-.-.+.++.++....+.+.+++..|..++..+-
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2 22222233467888888888888899998888877664
No 205
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=26 Score=39.66 Aligned_cols=173 Identities=12% Similarity=0.044 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHH
Q 008560 206 LEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEIC 285 (561)
Q Consensus 206 ~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll 285 (561)
+.++-.++..|..+....+....+..++ ++......|++.+..+--+|...+..|+... ....+|.|.+.-
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ek--vl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e~il~dL~e~Y 811 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEK--VLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PEDILPDLSEEY 811 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHH--HHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------chhhHHHHHHHH
Confidence 4567777778888877665566677788 9999999999998888888888777776541 223566666643
Q ss_pred hcCC----hHHHHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCc
Q 008560 286 QAGT----PGSQAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGG 360 (561)
Q Consensus 286 ~~~~----~~~~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~ 360 (561)
.+.. ++.+-..-.++.++... .+......+ -.+..++..+.+++...+..++..+.++|.-... +..=.-..+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~-~vsd~~~ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF-QVSDFFHEV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh-hhhHHHHHH
Confidence 3221 22222233566655432 233333222 4556666777767667888999999988763220 000022234
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
+..++.+.+.+.+.-+++.|+..+..+-.
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 56666777777777899999999998875
No 206
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.81 E-value=0.82 Score=43.57 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhccccchhhHhhc------CCCHHHHHHhccCCccchhhHHHHHHHHHhc--CCchHHHHHHHcCch
Q 008560 457 EEKESAAKALSTLMLYAGNRKILRKD------ERGIVTVVQLLDPLIQNLDKKYPVAILAALV--HCRKCRKQMVAAGAC 528 (561)
Q Consensus 457 ~v~~~A~~aL~~L~~~~~~~~~~~~~------~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La--~~~~~r~~i~~~g~i 528 (561)
.-|+.|.++|+.|+....|-..+..- ++-+..|+++|........+++|+..|.+|+ +..-+|..-.+.+++
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45899999999999887776666432 2335557777766666678999999999998 445566777888999
Q ss_pred HHHHHhhccCccchH
Q 008560 529 LHLRKLVEMDIEGAN 543 (561)
Q Consensus 529 ~~L~~Ll~~~~~~ak 543 (561)
..|+.++|..+..+.
T Consensus 219 ~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987665544
No 207
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=10 Score=43.49 Aligned_cols=211 Identities=19% Similarity=0.172 Sum_probs=137.8
Q ss_pred HHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCC--
Q 008560 171 MDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGS-- 248 (561)
Q Consensus 171 l~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~-- 248 (561)
-+.|..+.+.+.+|.+.+.+..++..++.++-+ .+-+...+.++..|-..+... ++.. -+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhq--elmalVdtLksgmvt 735 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQ--ELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHH--HHHHHHHHHHhccee
Confidence 345778888999999999999989888888743 345555666666554332111 1222 5667777777751
Q ss_pred ------H----HHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhc----------CCh-----------------
Q 008560 249 ------G----FAKERACVALQALSFS-KENARAIGSRGGISSLLEICQA----------GTP----------------- 290 (561)
Q Consensus 249 ------~----~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~----------~~~----------------- 290 (561)
. .....-..+++.+... ...+..+++.+|+..|...+-. ++.
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 1 1233444556655543 3456677777777777665531 000
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHhhC----------
Q 008560 291 -------------------------------------------------------GSQAFAAGVLRNLAG---------- 305 (561)
Q Consensus 291 -------------------------------------------------------~~~~~A~~aL~nLs~---------- 305 (561)
.....|+..+..+-.
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 001223333333311
Q ss_pred -CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc---CCCHHHHHHHH
Q 008560 306 -FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS---VSAVKSLEVAV 381 (561)
Q Consensus 306 -~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~---~~~~~~~e~a~ 381 (561)
....++++..+|++..++..+-...+..|..-+..+..++..++.+.......|.++.|++++.. +++ .....+.
T Consensus 896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgss-pfLshal 974 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSS-PFLSHAL 974 (2799)
T ss_pred CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCc-hHhhccH
Confidence 12357788899999999998888888888888999999998888778888888999999998864 333 4667777
Q ss_pred HHHHHhhc
Q 008560 382 ELLSQLAS 389 (561)
Q Consensus 382 ~aL~~L~~ 389 (561)
.++..|+.
T Consensus 975 kIvemLga 982 (2799)
T KOG1788|consen 975 KIVEMLGA 982 (2799)
T ss_pred HHHHHHhh
Confidence 88877774
No 208
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.11 E-value=12 Score=35.43 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--chHHHHHhchhhHHHH
Q 008560 168 NSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS-----LEMKEKTVASIARVSMVDS--SKHVLIAEGLLLLNHL 240 (561)
Q Consensus 168 ~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~~~e~a~~~L~~La~~~~--~~~~i~~~g~~~i~~L 240 (561)
..|+.-|..+ ...++.++.+.++-+--.|..+|...+ .-.+-.++.++..|..+++ ..+.+.... .+|.+
T Consensus 118 cnaL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe--ivPLc 194 (315)
T COG5209 118 CNALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE--IVPLC 194 (315)
T ss_pred HHHHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh--HHHHH
Confidence 4566544444 455677777777654444445553222 4567788889998887654 345566677 99999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--------cCCHHHHHHH-HhcCChHHHHHHHHHHHHhhCCchhhH
Q 008560 241 IRVLESGSGFAKERACVALQALSFSKENARAIGS--------RGGISSLLEI-CQAGTPGSQAFAAGVLRNLAGFSEIKE 311 (561)
Q Consensus 241 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~l-l~~~~~~~~~~A~~aL~nLs~~~~~r~ 311 (561)
+++++.|+.-.+..|+-++..+-.++..-.-+.+ ...+..++.. ...++....+.+.++-..||..++.|+
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 9999999999999999999999888765444333 1123333333 234566777888888888888887776
Q ss_pred HH
Q 008560 312 NF 313 (561)
Q Consensus 312 ~i 313 (561)
.+
T Consensus 275 lL 276 (315)
T COG5209 275 LL 276 (315)
T ss_pred HH
Confidence 55
No 209
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.67 E-value=72 Score=36.45 Aligned_cols=256 Identities=17% Similarity=0.126 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHH
Q 008560 164 AESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRV 243 (561)
Q Consensus 164 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~l 243 (561)
+..|..|+..+...++-.. -.=...+.+..|..+......++....+.+|+.....+.......++. ..|.++.+
T Consensus 505 ~~~ki~a~~~~~~~~~~~v---l~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~sk--I~P~~i~l 579 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCKVKV---LLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESK--ICPLTINL 579 (1005)
T ss_pred CchhHHHHHHHHhccCcee---ccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcc--hhHHHHHH
Confidence 3456666666655552110 001135777778887776677888888888888776654444444555 66666665
Q ss_pred Hh--cCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCC----hHHHHHHHHHHHHhhCCc--hhhHHHHh
Q 008560 244 LE--SGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGT----PGSQAFAAGVLRNLAGFS--EIKENFIE 315 (561)
Q Consensus 244 L~--~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~----~~~~~~A~~aL~nLs~~~--~~r~~i~~ 315 (561)
.- +.++.+...+-.++..|+....|...+.. -.||.|+.++.... +.....++..|.-+.... +.-..++
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~- 657 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI- 657 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-
Confidence 53 34677777777777777664444433332 26999999998654 455567777777665543 3233333
Q ss_pred hhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCChHHHHHHHH----hC-----cHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 316 ENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDDESLKLLIVR----EG-----GIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 316 ~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~----~g-----~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
.-+.|+++++. .+++.....++.+||..+.+.+. +.+.. .| .++.+-++|+...+......+-..+.
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~---eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~ 734 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALISVTL---EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVL 734 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH---HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHH
Confidence 34677877775 56666888999999999887653 22221 12 23444455655333222112222222
Q ss_pred HhhcChhhHHHHHhc--chHHHHHH-HhcCCCHHHHHHHHHHHHHHcCC
Q 008560 386 QLASCLPIAEVLVSD--GFVVRLVN-VLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 386 ~L~~~~~~~~~l~~~--~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
.|... .+ .++... ..+..++. +-......+-+.-+.++.+|.++
T Consensus 735 tLit~-a~-~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 735 TLITH-AS-SELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHHHH-HH-HHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 22210 00 111110 12333333 33445667777888888888763
No 210
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.30 E-value=12 Score=34.01 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=74.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCc--HHHHHHhhhcCCCHHHHHHHHHHHHHhhc----C
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGG--IGSLKSYWDSVSAVKSLEVAVELLSQLAS----C 390 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~--i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~----~ 390 (561)
..+..+..++++.+...+..++..+...+..++ .+.+.+.+. +..|+++++..+++.+.+.++.+|..+.. .
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345567778888888888888877777776542 234445543 88999999998888999999999998873 5
Q ss_pred hhhHHHHHh-c--chHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 391 LPIAEVLVS-D--GFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 391 ~~~~~~l~~-~--~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
++-..++.- . ++++.++.+++. ....+.+..+|..+-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 554444432 2 556777776664 3445566666666543
No 211
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.35 E-value=59 Score=34.33 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=103.0
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcch
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDD-KNVVIAVAQGVVPVLVKLMDS-SSLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~-~~~~~~e~a~~~L~~La~~~~~~ 226 (561)
..|.+++..+.. ...+.+..|+..|..+..++. ..+..-. ...+..+++.|+. .+...+..|+++|..+..+...+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 466777777764 366788889998888877662 1111111 1234567777776 67888999999999888664332
Q ss_pred HHHHH--hchhhHHHHHHHHhcCCHHHHHHHHHH-HHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh
Q 008560 227 HVLIA--EGLLLLNHLIRVLESGSGFAKERACVA-LQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNL 303 (561)
Q Consensus 227 ~~i~~--~g~~~i~~Lv~lL~~~~~~~~~~aa~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nL 303 (561)
+.+ +- ++..+++.-++...++-..|... +.-++.....+. |..+..++...+...--.++..+..+
T Consensus 365 --l~DstE~--ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 365 --LFDSTEI--AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred --hhchHHH--HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHH
Confidence 222 33 55555555555555544444444 333333322221 22222233333333334444455555
Q ss_pred hCCc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008560 304 AGFS--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNL 344 (561)
Q Consensus 304 s~~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 344 (561)
...- +--..+ =..+.|++++--.+.+..++..|+-||..+
T Consensus 434 ~e~l~~EeL~~l-l~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 434 FERLSAEELLNL-LPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HhhcCHHHHHHh-hhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 4321 111111 134778888888888888999888888775
No 212
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.40 E-value=75 Score=34.76 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=77.0
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
..+..++......+...|.+|++.|-.++++++++...+ +..|+.||.+.++.....+-.+|..|-..+
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d------ 127 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD------ 127 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC------
Confidence 456667777788889999999999999999988777665 568999999887665555555555543211
Q ss_pred HHhchhhHHHHHHHHh---cCCHHHHHHHHHHHHH-hcC-CCc-hH--HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHH
Q 008560 230 IAEGLLLLNHLIRVLE---SGSGFAKERACVALQA-LSF-SKE-NA--RAIGSRGGISSLLEICQAGTPGSQAFAAGVLR 301 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~---~~~~~~~~~aa~~L~~-Ls~-~~~-~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~ 301 (561)
..+ .+..+..-+. +++..+|+.+...|.. +-. ..+ .. ..+ +.-.+..+-++|.+-+..--......|.
T Consensus 128 -~k~--tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~-e~~i~~~ikkvL~DVTaeEF~l~m~lL~ 203 (556)
T PF05918_consen 128 -PKG--TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM-EEFIVDEIKKVLQDVTAEEFELFMSLLK 203 (556)
T ss_dssp -HHH--HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH-HHHHHHHHHHHCTT--HHHHHHHHHHHH
T ss_pred -cHH--HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 234 5555555554 6778889988877642 211 111 11 111 1113344445555544444455666666
Q ss_pred HhhC
Q 008560 302 NLAG 305 (561)
Q Consensus 302 nLs~ 305 (561)
.+-.
T Consensus 204 ~lk~ 207 (556)
T PF05918_consen 204 SLKI 207 (556)
T ss_dssp TSGG
T ss_pred hCcc
Confidence 6654
No 213
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.71 E-value=42 Score=40.49 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=80.8
Q ss_pred HHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH-HHHHHhCcHHHHHHhhhcCCC
Q 008560 295 FAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK-LLIVREGGIGSLKSYWDSVSA 373 (561)
Q Consensus 295 ~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r-~~~~~~g~i~~Lv~lL~~~~~ 373 (561)
.|..+...|+...+.-..+ .+.+..++..+......++..|+.||.++...++... +.-++.|+... +. +++
T Consensus 796 ~a~li~~~la~~r~f~~sf--D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R---~~--Dss 868 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSF--DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR---LN--DSS 868 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhh--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh---hc--cch
Confidence 4444444444433322222 3567777788887778999999999999999887432 22233332222 22 234
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 374 VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
..++|.|+..++...- .++...+. -+.+.+-+.+.+..|+..+.+++..+|..
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 5799999999997664 55544333 34555555556789999999999999973
No 214
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=82.21 E-value=20 Score=37.06 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhc--C--------CCHHHHHHHHHHHHHHcC-
Q 008560 362 GSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLN--C--------GVLSVRIAAARAVSMLGI- 430 (561)
Q Consensus 362 ~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~--~--------~~~~~~~~A~~aL~~L~~- 430 (561)
+.+..+|..+.....+..++..++.|++...+-+-+.....++.|+.+-+ + .+..+...|.++|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 44566666665556777889999999876655444443334444444332 1 123678889999999997
Q ss_pred CHHHHHHHHhCCChHHHHHhccC-----CCHHHHHHHHHHHHHhh-ccccchhhHhhcCCCHHHHHHhccC
Q 008560 431 NSKARKEMGECGCIGPLIKMLDG-----KAVEEKESAAKALSTLM-LYAGNRKILRKDERGIVTVVQLLDP 495 (561)
Q Consensus 431 ~~~~~~~i~~~g~i~~Lv~ll~~-----~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~i~~Lv~lL~~ 495 (561)
++.++....+......+++.+.. -...++..=..+|..|. .+...|.++..+..|++.+-+.|+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 67889999998888888887752 12234444556666665 4567788898999999999999864
No 215
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.90 E-value=19 Score=35.38 Aligned_cols=171 Identities=16% Similarity=0.062 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcC--CHHHHHHHHhc----CChHHHHHHHHHHHHhhCCchhhHHHHhhhh--HHHHH
Q 008560 252 KERACVALQALSFSKENARAIGSRG--GISSLLEICQA----GTPGSQAFAAGVLRNLAGFSEIKENFIEENA--VMVLL 323 (561)
Q Consensus 252 ~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~ll~~----~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~--v~~Lv 323 (561)
+--+..++.-+..++.....+...+ ....+..++.. ..+..+-.+++++.|+-..+..+..+..... +...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 3344444544445544443443322 23444444443 3456778899999999998888888875433 33333
Q ss_pred HHhhcC----CHHHHHHHHHHHHHhcCCChHHH-HHHHHhCcHHHHHHhh-hcCCCHHHHHHHHHHHHHhhcChhhHHHH
Q 008560 324 GLVASG----TALAQENVFGCLCNLVSDDESLK-LLIVREGGIGSLKSYW-DSVSAVKSLEVAVELLSQLASCLPIAEVL 397 (561)
Q Consensus 324 ~lL~~~----~~~~~~~a~~~L~~L~~~~~~~r-~~~~~~g~i~~Lv~lL-~~~~~~~~~e~a~~aL~~L~~~~~~~~~l 397 (561)
..+... +..++..++..+.|++..--..+ ..-.+...+..+++.+ ....+++.....+.+|++|...+......
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 333333 46788999999999975211101 0001111345555533 33467899999999999999866666665
Q ss_pred Hhc-chHHHHHHHh-cCCCHHHHHHHH
Q 008560 398 VSD-GFVVRLVNVL-NCGVLSVRIAAA 422 (561)
Q Consensus 398 ~~~-~~i~~Lv~lL-~~~~~~~~~~A~ 422 (561)
... ++-..+-..- ...++.+++.+.
T Consensus 240 ~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 240 AKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp CCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHcChHHHHHHHHhcccchHHHHHhc
Confidence 553 4443333333 233456655543
No 216
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.31 E-value=33 Score=39.31 Aligned_cols=176 Identities=10% Similarity=-0.018 Sum_probs=113.4
Q ss_pred cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh-cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHH
Q 008560 287 AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA-SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLK 365 (561)
Q Consensus 287 ~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv 365 (561)
+.+-.-+..|+..++...............|.+..+++... +.+..+...++.+|..|+...... ..=...++.+.++
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~ll 342 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLL 342 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHH
Confidence 33445566777777766554431111123345555555554 445578888999999998754321 1112345677888
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CH-H--HHHHHHh
Q 008560 366 SYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NS-K--ARKEMGE 440 (561)
Q Consensus 366 ~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~-~--~~~~i~~ 440 (561)
..+..... .+++..+.++...+. ++ -....+.+...+.++++..+......+..... .+ . .+..+
T Consensus 343 d~lkekk~-~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~-- 412 (815)
T KOG1820|consen 343 DRLKEKKS-ELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV-- 412 (815)
T ss_pred HHhhhccH-HHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH--
Confidence 87776554 677777777766664 11 12456788889999999998887666666554 22 1 22222
Q ss_pred CCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 441 CGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 441 ~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
.+.++.++....+.+..||..|.+++..+....
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999998887543
No 217
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.30 E-value=30 Score=39.40 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=89.3
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh-c-chHHHHHHHhcCCCHHHHHHHHHHHHHHcC-C----
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS-D-GFVVRLVNVLNCGVLSVRIAAARAVSMLGI-N---- 431 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~-~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~---- 431 (561)
..+|.|+..+.+.+. ..+-.-+.+|.++-.+-.. +.+.. . ..+|-|++.|...+..++-.+..++.-+.. +
T Consensus 867 ~ivP~l~~~~~t~~~-~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPG-SQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCc-cchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 467888888875433 5666777888887763332 23322 2 567888889988888888877777766654 1
Q ss_pred HHHHHHHHhCCChHHHHHhccCCC---HHHHHHHHHHHHHhhc-cccchhhHhhcCCCHHHHHHhccCCccchhhHHHHH
Q 008560 432 SKARKEMGECGCIGPLIKMLDGKA---VEEKESAAKALSTLML-YAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVA 507 (561)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~ll~~~~---~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~ 507 (561)
+++... .+|.++.+-.+.+ ..+|+.|.+.|..|.. .+.++-.- -....+..|...|+.... ..++.|+.
T Consensus 945 t~~~~T-----lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~-fr~~Vl~al~k~LdDkKR-lVR~eAv~ 1017 (1030)
T KOG1967|consen 945 TEHLST-----LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS-FRPLVLRALIKILDDKKR-LVRKEAVD 1017 (1030)
T ss_pred hHHHhH-----HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc-ccHHHHHHhhhccCcHHH-HHHHHHHH
Confidence 333333 4788888877543 5689999999999997 33332222 222466777777876433 23344544
No 218
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.82 E-value=9.8 Score=33.61 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=62.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++..|.+-|.++++.++..|+..|..+..+ +..+...+...+.++.|++++....++.+++.++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4667777888888899999999988888875 466888999999999999999877777999999999998874
No 219
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.28 E-value=75 Score=35.55 Aligned_cols=97 Identities=19% Similarity=0.046 Sum_probs=67.5
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHH
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGINSKARK 436 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~ 436 (561)
++|..|+.+--++.+..+++.|+.+|+.++. .|+ .++..|++|. +.++-++--|+.+|.-.|.....+.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4677777775444445899999999999885 444 3466777774 5588999999999998887554444
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 437 EMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 437 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
++ ..|-.|..+...-||+.|+-++..+.
T Consensus 625 Ai------~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 AI------NLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HH------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 33 33444445666677887777776665
No 220
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=79.28 E-value=18 Score=29.72 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHH
Q 008560 165 ESKNSAMDSLLGLLQEDDKNVVIAV-AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRV 243 (561)
Q Consensus 165 ~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~l 243 (561)
|.|..|+..+..-...+--.-..+. ..+.+..|+.-+..+.+...+.++..|..+..++.....+.+-| ++.-|-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG--~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIG--AVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHcc--HHHHHHHH
Confidence 4677788877766554433333333 34666677777777776788999999999999998888888899 88877666
Q ss_pred HhcCCHHHHHHHHHHH
Q 008560 244 LESGSGFAKERACVAL 259 (561)
Q Consensus 244 L~~~~~~~~~~aa~~L 259 (561)
=..-++..+...-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5555555555444443
No 221
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=78.43 E-value=39 Score=38.31 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=118.8
Q ss_pred HHHHhhccCchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHhchhhHH--HHHHHHhcC-C
Q 008560 173 SLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS-LEMKEKTVASIARVSMVDSSKHVLIAEGLLLLN--HLIRVLESG-S 248 (561)
Q Consensus 173 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~--~Lv~lL~~~-~ 248 (561)
.|.....+++++.+.+.+.|++..+...++.-+ .+++..++..+.+++...+.+....... .+. .+-.++..- +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~--~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFE--FIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHhhcch
Confidence 677888889999999999999999999998653 6788999999999997765544333222 122 333344443 3
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh-hCCchhhHHHHhhhhHHH-HHHHh
Q 008560 249 GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNL-AGFSEIKENFIEENAVMV-LLGLV 326 (561)
Q Consensus 249 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nL-s~~~~~r~~i~~~g~v~~-Lv~lL 326 (561)
.+.-+.|+..|..+..+.+.. ...+ .+..+...+... .........+.-...+.. +..++
T Consensus 572 ~ersY~~~siLa~ll~~~~~~---~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKT---TECV---------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcC---cccc---------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence 477788888888887664331 1111 111111111111 112222222222222333 44444
Q ss_pred h-cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 327 A-SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 327 ~-~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
. +..+..+.-|++++.++...++.+++.+.+.|+++.+.+.-.......+++.+...+.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 4 3445788999999999999988888889999998888776544323344444444443
No 222
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.10 E-value=19 Score=42.07 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=103.3
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHHHhc-CCcchHHHHHhchhhHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCC
Q 008560 193 VVPVLVKLMDS----SSLEMKEKTVASIARVSM-VDSSKHVLIAEGLLLLNHLIRVLE-SGSGFAKERACVALQALSFSK 266 (561)
Q Consensus 193 ~v~~Lv~lL~~----~~~~~~e~a~~~L~~La~-~~~~~~~i~~~g~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~ 266 (561)
+.|.++..++. ++|++|..|.-+|+.+-. +.+. - +. .++.|+.+++ ++++.+|.+++.++.-++..-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----c-es--~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----C-ES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----H-HH--HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 56677777743 469999999999987642 2221 1 23 5899999998 668999999999998887642
Q ss_pred chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 267 ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 267 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
.|- .+ ---+.|..-+++.++.+++.|.-+|.+|-..+-++. .|.+..+..++.+++..+..-|-.....|+.
T Consensus 993 pnl---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNL---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 221 11 124567778889999999999999999987654433 4888999999999998888877766666665
Q ss_pred C
Q 008560 347 D 347 (561)
Q Consensus 347 ~ 347 (561)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 3
No 223
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.90 E-value=7.8 Score=34.33 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhhcc
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDG-KAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~ 472 (561)
.++..|.+-|.+.++.++..|...|-.+..| .....++....++..|++++.. .++.|+++...++...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999888888864 6788888888999999999986 7889999999999887743
No 224
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.46 E-value=14 Score=32.09 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=60.2
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccC---CCHHHHHHHHHHHHHhhcccc
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDG---KAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~---~~~~v~~~A~~aL~~L~~~~~ 474 (561)
.++..|-+.|.++++.++..|..+|-.+..+ ......+.....+..|++++.. .++.++.++.+.+......-.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3567888888999999999999988888864 5577888887888889999975 478899999999988875433
No 225
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=77.08 E-value=1e+02 Score=32.57 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc
Q 008560 251 AKERACVALQALS-FSKENARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVAS 328 (561)
Q Consensus 251 ~~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~ 328 (561)
-+..|..=|..+. .....-|.-.-...+..+++++.+ .+...++.|+++|...+.+...|-.=-.+-++..+++.-.+
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d 382 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD 382 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC
Confidence 3444444344443 344444432222246778888887 67888999999999998776443332233466666666666
Q ss_pred CCHHHHHHHHH-HHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh--cchHHH
Q 008560 329 GTALAQENVFG-CLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS--DGFVVR 405 (561)
Q Consensus 329 ~~~~~~~~a~~-~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~--~~~i~~ 405 (561)
.+..+...|.. |+.-+++.++.. .|..+..++.+.++ ..--.++..+..++.. -..+.+.. ..+.|.
T Consensus 383 s~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~-~~~~~~iKm~Tkl~e~-l~~EeL~~ll~diaP~ 452 (516)
T KOG2956|consen 383 SQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADE-PRAVAVIKMLTKLFER-LSAEELLNLLPDIAPC 452 (516)
T ss_pred CchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcc-hHHHHHHHHHHHHHhh-cCHHHHHHhhhhhhhH
Confidence 65555444443 344555555421 13333344444333 3344455555555541 12333433 368899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 406 LVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 406 Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
+++.-.+.+..++..|+.+|..+.
T Consensus 453 ~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 453 VIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHhcCchHHhhhhHHHhHHHHH
Confidence 999999999999999999997765
No 226
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.52 E-value=38 Score=37.46 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChh-hHHHHHhcchHHHHHH
Q 008560 330 TALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLP-IAEVLVSDGFVVRLVN 408 (561)
Q Consensus 330 ~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~-~~~~l~~~~~i~~Lv~ 408 (561)
++.++..|.-+|..+-.-+..++ ..-+|.|+..+...+.|.++..++-.|+.+..|-. ..++. -.-|.+
T Consensus 909 d~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLyr 978 (1128)
T COG5098 909 DEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLYR 978 (1128)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHHH
Confidence 44566666666655432211111 23478888889877778999999999998876322 22221 244556
Q ss_pred HhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHH
Q 008560 409 VLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVT 488 (561)
Q Consensus 409 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~ 488 (561)
-|.+.+..++..+..++..|--. ..+.-.|-.+.+..+|.+.+.++.++|...+..++..... + ..|.--
T Consensus 979 rL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt---~---yn~fid 1048 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT---M---YNGFID 1048 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc---h---hhhhHH
Confidence 66777889999998888877531 1222347788999999999999999999888888753321 1 245555
Q ss_pred HHHhccCC--ccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCcc-chHHHHHhhc
Q 008560 489 VVQLLDPL--IQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDIE-GANKLLESLG 550 (561)
Q Consensus 489 Lv~lL~~~--~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~~-~akk~~~~l~ 550 (561)
+...|.+. .+...-+..++.|..+.+-+...+++.+.-+ .++...++. .|.+++..|+
T Consensus 1049 ifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~----~rl~rc~tq~qwd~~~~~l~ 1109 (1128)
T COG5098 1049 IFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLF----LRLLRCNTQSQWDKLLCSLF 1109 (1128)
T ss_pred HHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHh
Confidence 66777543 2212223478888888877777777654322 234443332 4555555443
No 227
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.47 E-value=53 Score=38.13 Aligned_cols=279 Identities=17% Similarity=0.212 Sum_probs=156.2
Q ss_pred cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHH
Q 008560 160 QIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNH 239 (561)
Q Consensus 160 ~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~ 239 (561)
++.+.+.+...+..+..+-..+++|-...-+.--+|.++.-+......+|...+.+|-.-...-. .+ -+. -+-.
T Consensus 477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvn---cv-Peq--ELlS 550 (2799)
T KOG1788|consen 477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVN---CV-PEQ--ELLS 550 (2799)
T ss_pred HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhc---cC-cHH--HHHH
Confidence 45666677788888888888888887777777888888887766555555555554422110000 00 011 2334
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHh-cCCCchHHHHHhcCCHHHHHHHHhcC----ChHH-HHHHHHHHHHhhCCchhhHH
Q 008560 240 LIRVLESG-SGFAKERACVALQAL-SFSKENARAIGSRGGISSLLEICQAG----TPGS-QAFAAGVLRNLAGFSEIKEN 312 (561)
Q Consensus 240 Lv~lL~~~-~~~~~~~aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~-~~~A~~aL~nLs~~~~~r~~ 312 (561)
|.-+|+.+ +...+.........| +.+...+..+.+.|.++.|-..++.. .|+. ....-..=+|.+. +..|..
T Consensus 551 LCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss-~sf~~~ 629 (2799)
T KOG1788|consen 551 LCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSS-PSFKQH 629 (2799)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCC-chhhhc
Confidence 55566655 333333333333344 44556788888899999998877641 1110 0000000011111 111222
Q ss_pred HHhhhhHHHHHHHhhcCCH--HHH------HHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 313 FIEENAVMVLLGLVASGTA--LAQ------ENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 313 i~~~g~v~~Lv~lL~~~~~--~~~------~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
+-...++-.--++..+++. .+. .-.-.||..|...++.++..+.+..|+..++.++-+ .+-+...++++
T Consensus 630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflin---dehRSslLriv 706 (2799)
T KOG1788|consen 630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIN---DEHRSSLLRIV 706 (2799)
T ss_pred cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeec---hHHHHHHHHHH
Confidence 1111111111122333222 111 122456777777777788888888888888877744 25566677777
Q ss_pred HHhhc-ChhhHHHHHhcchHHHHHHHhcCCC------------HHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHh
Q 008560 385 SQLAS-CLPIAEVLVSDGFVVRLVNVLNCGV------------LSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKM 450 (561)
Q Consensus 385 ~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~------------~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~l 450 (561)
..|-. .+.. +.+.-+..+|..|+++- ..+...-..++|++.. +...+..++++|+...|...
T Consensus 707 scLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLltt 782 (2799)
T KOG1788|consen 707 SCLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTT 782 (2799)
T ss_pred HHHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHH
Confidence 77764 3321 01234566777776531 1445566788888876 67889999999998888777
Q ss_pred cc
Q 008560 451 LD 452 (561)
Q Consensus 451 l~ 452 (561)
|.
T Consensus 783 Lh 784 (2799)
T KOG1788|consen 783 LH 784 (2799)
T ss_pred HH
Confidence 64
No 228
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.85 E-value=16 Score=32.32 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=61.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++..|.+-+.+.++.++..|+..|..+..+ +..+...+.....+..|++++....+..+++.++..|...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3566777788888889999999999888864 346888999999999999999886777999999999998874
No 229
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.58 E-value=14 Score=32.62 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDS-SSLEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~e~a~~~L~~La~ 221 (561)
...++.+..+|+++++..+..|+.-|-.+.+.. ......+.+.+++..|+.++.. .++.+++.++..+..-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999777777764 4566778888999999999974 468899999999887763
No 230
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.02 E-value=21 Score=31.10 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hhHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDK-NVVIAVAQGVVPVLVKLMDS---SSLEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~---~~~~~~e~a~~~L~~La~ 221 (561)
...++.+-.+|+++++..+..|+.-|-.+.+.... ....+....++..|+.++.. .++.+++.++..+...+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999988888776654 66777777888889999976 368999999999987764
No 231
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=45 Score=35.37 Aligned_cols=158 Identities=18% Similarity=0.080 Sum_probs=88.1
Q ss_pred cCCHHHHHHHHh----cCChHHHHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCC
Q 008560 275 RGGISSLLEICQ----AGTPGSQAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 275 ~g~i~~Lv~ll~----~~~~~~~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
+|.+..++..+. +.+...+..|++.|.|.+.. ++-++..... .+..++.-| ...+.+++-.++.+|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 455555444443 34556789999999999987 4444443332 344444444 3445678888888887765422
Q ss_pred hHHHHHHHHhC---cHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHhc--chHHHHHHHhcCCCHHHHHHH
Q 008560 349 ESLKLLIVREG---GIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CLPIAEVLVSD--GFVVRLVNVLNCGVLSVRIAA 421 (561)
Q Consensus 349 ~~~r~~~~~~g---~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~~~~~~l~~~--~~i~~Lv~lL~~~~~~~~~~A 421 (561)
.+ .-+..+ +.-.+-.++++..+ +.+..+..+.+.|+. ....+..+.+. +...+++-.|.+.++.+ -.|
T Consensus 332 ~~---~~l~~~~l~ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~A 406 (533)
T KOG2032|consen 332 SN---DDLESYLLNIALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARA 406 (533)
T ss_pred hh---cchhhhchhHHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHH
Confidence 11 011122 22344455555554 888888888888885 33333444331 23344445555555543 356
Q ss_pred HHHHHHHcCCHHHHHHH
Q 008560 422 ARAVSMLGINSKARKEM 438 (561)
Q Consensus 422 ~~aL~~L~~~~~~~~~i 438 (561)
+......|...-.+++.
T Consensus 407 Cr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 407 CRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHHHhcCchhHHHHH
Confidence 67777777644444443
No 232
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.20 E-value=1.3e+02 Score=32.16 Aligned_cols=154 Identities=15% Similarity=0.045 Sum_probs=92.9
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLV-KLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
...+..+..+...++...|..|+..|.+.+.+-+.-++..... .+..++ .+.+..+.+++-+++.+|..+...-.+..
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 3344445555666777788899999999998855433332222 233333 35555668888888888887764332221
Q ss_pred HHH-HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc--hHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 228 VLI-AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE--NARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 228 ~i~-~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
..- =-. +.-.+..+.++..++.|..|-.++..|+.-.. .+..+.+ .+...+|+-.+.+.+|..-. |++....
T Consensus 336 l~~~~l~--ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~ 412 (533)
T KOG2032|consen 336 LESYLLN--IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELR 412 (533)
T ss_pred hhhhchh--HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHH
Confidence 110 012 44556677888899999999999888876543 3333332 34455666667776665444 4444444
Q ss_pred hhCC
Q 008560 303 LAGF 306 (561)
Q Consensus 303 Ls~~ 306 (561)
.+.-
T Consensus 413 ~c~p 416 (533)
T KOG2032|consen 413 TCYP 416 (533)
T ss_pred hcCc
Confidence 4433
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.24 E-value=96 Score=29.87 Aligned_cols=129 Identities=14% Similarity=0.011 Sum_probs=81.7
Q ss_pred hcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHH
Q 008560 286 QAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSL 364 (561)
Q Consensus 286 ~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~L 364 (561)
+..++..+.....+|..++..+ .+... ++..+..+...+....+.-+...+..+-..++..- +.++.+
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~ 79 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPL 79 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHH
Confidence 3457788888999999998876 33332 45556666666666665666666766666543210 334444
Q ss_pred HHhh--h-------cCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHHHHHcC
Q 008560 365 KSYW--D-------SVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVL-NCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 365 v~lL--~-------~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~A~~aL~~L~~ 430 (561)
+..+ + .....+........+..+|. .|+ ....+++.+...| +..++.++..+..+|..||.
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4331 1 11122344444567888886 433 1235678888888 78888899999999999994
No 234
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.84 E-value=21 Score=31.11 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHH-HHHHHHHHHHHhhc
Q 008560 318 AVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVK-SLEVAVELLSQLAS 389 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~-~~e~a~~aL~~L~~ 389 (561)
++..|-+-|.++++.++..|+..|-.+..+ .+.+...+...+.++.|.+++.+..+.. +++.++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 566677788888899999999999888875 5668889999999999999998865444 89999988888764
No 235
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=71.83 E-value=98 Score=29.80 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=84.1
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHH
Q 008560 195 PVLVK-LMDSSSLEMKEKTVASIARVSMVD-SSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAI 272 (561)
Q Consensus 195 ~~Lv~-lL~~~~~~~~e~a~~~L~~La~~~-~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 272 (561)
+.|+. +-+..++..+...+..|..++.++ .+. .- ++..|..+.+.++.+.+.-+.+.+..+-...+-. +
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~--v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PP--VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--F 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hH--HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--H
Confidence 44444 445667899999999999999876 222 22 5666667777777777666777776664432211 0
Q ss_pred HhcCCHHHHHHH--Hh------cCC--hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHh-hcCCHHHHHHHHHHH
Q 008560 273 GSRGGISSLLEI--CQ------AGT--PGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLV-ASGTALAQENVFGCL 341 (561)
Q Consensus 273 ~~~g~i~~Lv~l--l~------~~~--~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L 341 (561)
+.+..++.. ++ +++ -+.....+..+..+|...+. .....++.+..++ .+.++..+..++.+|
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233333333 11 111 12234445567777765544 2234677788888 677778899999999
Q ss_pred HHhcC
Q 008560 342 CNLVS 346 (561)
Q Consensus 342 ~~L~~ 346 (561)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99983
No 236
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.43 E-value=75 Score=28.73 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred hHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh--cCChHHHHHhhcCCC-HHHHHHHHHHHHHHhc
Q 008560 145 REAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVA--QGVVPVLVKLMDSSS-LEMKEKTVASIARVSM 221 (561)
Q Consensus 145 ~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~ 221 (561)
.......+..+...|++.+++.|..++.-+...+..++ ...+.+ .--+..|+.+|+.++ +.+.+.++.+|..|-.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44556667778888899889999988887777666543 233333 245677888888765 5677888887776643
Q ss_pred ----CCcchHHHHHhch-hhHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008560 222 ----VDSSKHVLIAEGL-LLLNHLIRVLESGSGFAKERACVALQALSF 264 (561)
Q Consensus 222 ----~~~~~~~i~~~g~-~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 264 (561)
.++..+.+..... ..+..++.+++. ....+.+..+|..+-.
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3443444433221 266667777664 3445556666665543
No 237
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=70.79 E-value=22 Score=30.95 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDSSS--LEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~e~a~~~L~~La~ 221 (561)
...++.+..+|+++++..+..|+.-|-.+.+.+ +.....+...+++..|+.++.... +.+++.++..+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999887777764 456677888899999999998754 4489999888877653
No 238
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.36 E-value=1e+02 Score=34.08 Aligned_cols=163 Identities=14% Similarity=0.017 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchHHHHHh----cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhh--hhH
Q 008560 246 SGSGFAKERACVALQALSFSKENARAIGS----RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEE--NAV 319 (561)
Q Consensus 246 ~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~--g~v 319 (561)
.-+.+.+--|..+|.-+..++..-..+.. +..+..++..+. +++..+-.++++|.|+-.++..+..+... -..
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 33455556666666666655433322222 223444444444 56788889999999999887777666532 222
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc----CCCHHHHHHHHHHHHHhhcChhhHH
Q 008560 320 MVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS----VSAVKSLEVAVELLSQLASCLPIAE 395 (561)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~----~~~~~~~e~a~~aL~~L~~~~~~~~ 395 (561)
..+++.=...+..++..-+....|.+.. .-+.-.+.++.+.|...+.. ..+-+.....+.+|++|+..+.+..
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 3333332233345555544444554321 11111235666666666543 3334566678888999998777777
Q ss_pred HHHhcchHHHHHHHhcC
Q 008560 396 VLVSDGFVVRLVNVLNC 412 (561)
Q Consensus 396 ~l~~~~~i~~Lv~lL~~ 412 (561)
++...--+..++.-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 77776667777776653
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.09 E-value=1e+02 Score=34.29 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc----CCHHHHHHHHHHHHHhcCC--
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES----GSGFAKERACVALQALSFS-- 265 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~----~~~~~~~~aa~~L~~Ls~~-- 265 (561)
.++..+..++.+.... -..|...|..+..... --... .+..+..+++. .+..++..|..++..|...
T Consensus 395 ~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~----~Pt~e--~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVR----RPTEE--LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S--HHHHHHHHHHHHHT---------HH--HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcC----CCCHH--HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 4566677777765422 2335555555543210 00122 55555566654 3566777777777776542
Q ss_pred -Cc-------hHHHHHhcCCHHHHHHHHh----cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcC---C
Q 008560 266 -KE-------NARAIGSRGGISSLLEICQ----AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASG---T 330 (561)
Q Consensus 266 -~~-------~~~~i~~~g~i~~Lv~ll~----~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~---~ 330 (561)
.. ..........++.|...+. .++...+..++.+|.|+.. ...++.|..++... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccc
Confidence 10 1111122335666666665 3456777889999999853 24777788877766 4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHH
Q 008560 331 ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNV 409 (561)
Q Consensus 331 ~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~l 409 (561)
..++..|+.+|..++...+. .+.+.|+.++.+ ..+.++|..|+.+|...- |. ...+..+...
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~--P~-------~~~l~~i~~~ 600 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMRCN--PS-------PSVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--CC-------HHHHHHHHHH
Confidence 57889999999988666542 234566677655 445677777766655421 11 1345666666
Q ss_pred hcC
Q 008560 410 LNC 412 (561)
Q Consensus 410 L~~ 412 (561)
+..
T Consensus 601 l~~ 603 (618)
T PF01347_consen 601 LWN 603 (618)
T ss_dssp HTT
T ss_pred Hhh
Confidence 654
No 240
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.09 E-value=25 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 279 SSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 279 ~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
...+.-+.+..+..+..++..|++|..... ....-..+++..+...++++++-+-.+|+.+|..|+...+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 334455666777888899999999887665 2222345778888899999998999999999999987665
No 241
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=25 Score=37.93 Aligned_cols=63 Identities=13% Similarity=-0.119 Sum_probs=27.7
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
+..-+++|..+....++.-..-+|+-.|...... -++..|-.++.+.+.-+++.|..++.-+.
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 3444445544444455555555555555422110 11223333344444555555555544443
No 242
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.66 E-value=46 Score=27.30 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=56.8
Q ss_pred HHHHh-cchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 008560 395 EVLVS-DGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKAL 466 (561)
Q Consensus 395 ~~l~~-~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL 466 (561)
+.+.+ ...+..|++.....+...++.+...|..+..++.....+.+-|++.-|-++-..-++..+...-+++
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33443 3678888888888777789999999999999999999999999999988877666666666555544
No 243
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.54 E-value=26 Score=30.77 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=58.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDS------SSLEMKEKTVASIARVS 220 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~e~a~~~L~~La 220 (561)
+..++.+..+|+++++..+..|+.-|-.+.+.. ......+...+++..|++++.. .++.+++..+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999887777754 4567788889999999999963 35789999988887665
No 244
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.43 E-value=21 Score=31.34 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=58.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhh
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDG------KAVEEKESAAKALSTLM 470 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~aL~~L~ 470 (561)
.++..+.+-|.++++.++..|...|-.+..| ...+.++...+++..|++++.. .+..|+.+...++..-.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3567788888999999999999888888763 6788899999999999999963 46789999888887665
No 245
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.19 E-value=1.1e+02 Score=33.40 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC---CHHHHHH
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI---NSKARKE 437 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~---~~~~~~~ 437 (561)
+..+++-+++ .+..++..++.+|+.+..+-.-.+...-.|.+..|.+-+-+..+.++..|+.+|+.+-. ++++..
T Consensus 93 ~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~- 170 (885)
T COG5218 93 FYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI- 170 (885)
T ss_pred HHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH-
Confidence 3344444444 34589999999999998754444455556778888887777889999999999998864 344332
Q ss_pred HHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhccccchh
Q 008560 438 MGECGCIGPLIKMLD-GKAVEEKESAAKALSTLMLYAGNRK 477 (561)
Q Consensus 438 i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~ 477 (561)
...|+.+++ +++.++|+. +|.++...+..+.
T Consensus 171 ------~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p 202 (885)
T COG5218 171 ------VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYP 202 (885)
T ss_pred ------HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcch
Confidence 346677777 577888875 4667765444433
No 246
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.88 E-value=2.1e+02 Score=32.09 Aligned_cols=129 Identities=18% Similarity=0.113 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh
Q 008560 207 EMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ 286 (561)
Q Consensus 207 ~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~ 286 (561)
.+.+-+++.+..+-..+..-. + -.| .+..+++-.++.+..+|..++.+|..+.....-...-.-.+....+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D-l-V~~--~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED-L-VAG--TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh-H-HHH--HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh
Confidence 344455555555543221111 2 345 678888888888999999999999998774322223333445677777778
Q ss_pred cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 008560 287 AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVAS-GTALAQENVFGCLCN 343 (561)
Q Consensus 287 ~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~ 343 (561)
+..|.++..|..+|..+-..+..- +..++..+..+++. ++++++..++..+.+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 889999999999999997543110 12466778888874 455788876655443
No 247
>PRK09169 hypothetical protein; Validated
Probab=67.26 E-value=3.7e+02 Score=34.64 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred CHHHHHHhccCCccchh-hHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhcc
Q 008560 485 GIVTVVQLLDPLIQNLD-KKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEM 537 (561)
Q Consensus 485 ~i~~Lv~lL~~~~~~~~-k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~ 537 (561)
+|...+.-|..-+.... +..+......++..+..+..+...+.--.|-.|..-
T Consensus 500 ~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKW 553 (2316)
T PRK09169 500 GLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKW 553 (2316)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcC
Confidence 45555554433222222 222223333444555555555555544444444443
No 248
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.23 E-value=2.1 Score=44.49 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=47.7
Q ss_pred hhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCC
Q 008560 45 TQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQD 124 (561)
Q Consensus 45 ~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~ 124 (561)
+-+..+...-..+.||||.+++.+ ||....|++| =...|..|+.. ...|| +=..+..
T Consensus 15 t~~~~l~~Le~~l~C~IC~d~~~~----------PvitpCgH~F---------Cs~CI~~~l~~-~~~CP--~Cr~~~~- 71 (397)
T TIGR00599 15 TPIPSLYPLDTSLRCHICKDFFDV----------PVLTSCSHTF---------CSLCIRRCLSN-QPKCP--LCRAEDQ- 71 (397)
T ss_pred CCcccccccccccCCCcCchhhhC----------ccCCCCCCch---------hHHHHHHHHhC-CCCCC--CCCCccc-
Confidence 333444444467999999999986 4665667888 56688889875 45899 4444444
Q ss_pred Ccccccccccccccc
Q 008560 125 GDVLIKSGVLQDGVV 139 (561)
Q Consensus 125 ~~~lipN~tLr~li~ 139 (561)
...+.+|..|..++.
T Consensus 72 ~~~Lr~N~~L~~iVe 86 (397)
T TIGR00599 72 ESKLRSNWLVSEIVE 86 (397)
T ss_pred cccCccchHHHHHHH
Confidence 235666666665543
No 249
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=67.14 E-value=7.9 Score=34.41 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=59.0
Q ss_pred HHHhHhhhcccccccchhhhHHHHHHhhhHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008560 15 HLSSLLDQIPLVKHFKGKWVIVKTKLNDLETQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVS 87 (561)
Q Consensus 15 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~ 87 (561)
++..++.++..+..|+.-.+.+.+.++.+.-...++-........|- .+.++...++|+++.++|.+|...+
T Consensus 18 Llk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 18 LLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77888888888899998888888888888877766664444555565 8889999999999999999998664
No 250
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.12 E-value=21 Score=28.86 Aligned_cols=69 Identities=6% Similarity=0.085 Sum_probs=53.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM 221 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~ 221 (561)
.....+..|+++.+..|..++..|..+....+ ...+-..+.+..+...|+++++-+--+|+..|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45667788888888899999999999998766 1122234667777788889998888899999988874
No 251
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.17 E-value=1.7 Score=40.03 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh---------------hcchhHHH
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH---------------VRDGDVLI 117 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~---------------~~~cp~l~ 117 (561)
....|+||||++.++++ .++.| |+.| =..-|.+|+..+ ...|| +
T Consensus 15 ~~~~~~CpICld~~~dP---------VvT~C-GH~F---------C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--v 73 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---------VVTLC-GHLF---------CWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--V 73 (193)
T ss_pred CCCccCCccCCCcCCCc---------EEcCC-Cchh---------HHHHHHHHHHhccccccccccccccCCCCcCC--C
Confidence 34569999999999875 24455 6888 788999998642 35899 7
Q ss_pred hccCCCCCcccccccccc
Q 008560 118 KSGVLQDGDVLIKSGVLQ 135 (561)
Q Consensus 118 t~~~l~~~~~lipN~tLr 135 (561)
-...+.. ..++|.+.-.
T Consensus 74 CR~~Is~-~~LvPiygrg 90 (193)
T PLN03208 74 CKSDVSE-ATLVPIYGRG 90 (193)
T ss_pred CCCcCCh-hcEEEeeccC
Confidence 7777763 5677766543
No 252
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=63.87 E-value=30 Score=39.48 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=95.2
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHH
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
...+|.|++...+.+...+..=+.+|.++-.+-. +..+...-...+|.|++.|.-.+..+|..+..++.-+....+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3678889988875555555566666766554311 233322111278888899988999999999988887654432211
Q ss_pred HHHhcCCHHHHHHHHhcCC---hHHHHHHHHHHHHhhC-CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHH
Q 008560 271 AIGSRGGISSLLEICQAGT---PGSQAFAAGVLRNLAG-FSEIKENFIEENAVMVLLGLVASGTALAQENVFGC 340 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~---~~~~~~A~~aL~nLs~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 340 (561)
.---.-.+|.++.+-.+.+ ..++..|+.+|..|.. .+..+-.-....++..|++.|.+..--+|..|..+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1111124677776665544 5678899999999987 44433333345678888888877766677766654
No 253
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.69 E-value=90 Score=28.10 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=78.7
Q ss_pred hhHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHH
Q 008560 317 NAVMVLLGLVASGT-ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAE 395 (561)
Q Consensus 317 g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~ 395 (561)
..++.|+.+++.+. ..++.+++.+|..|-+-|+...+.+....- ..-........... .+.+.... ...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~---~l~~~~~~-~~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDI---SLPMMGIS-PSSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhh---HHhhccCC-CchH
Confidence 45677888887664 589999999999999888743332211110 00000000011111 11111111 1233
Q ss_pred HHHhcchHHHHHHHhcCCCH-HHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 396 VLVSDGFVVRLVNVLNCGVL-SVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 396 ~l~~~~~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
+..-..++..|+..|++.+- .-...++.++.++..+ ..+...+- -++|.++..++.+++..++.-..-|..|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444567888888877653 3334566666666642 33333332 25899999999888788887666555553
No 254
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=62.67 E-value=4 Score=43.94 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=64.1
Q ss_pred cccchhhhHHHHHHhhhH--hh--hcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCcchhhhhHHH
Q 008560 27 KHFKGKWVIVKTKLNDLE--TQ--LKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQ-GVSLTEGKLKTQSDIDS 101 (561)
Q Consensus 27 ~~f~~~~~~~~~~~~~l~--~~--l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~-~~~y~~g~l~~~sd~~~ 101 (561)
++|..+-....+|+|+.. .. =-|..++|+.|-.|+--.+|+| ||.+.+ +.+. ||+-
T Consensus 821 ~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFlDPLmftimkd----------PV~Lp~S~i~I---------DRST 881 (929)
T COG5113 821 ESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKD----------PVKLPTSRITI---------DRST 881 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhCchhhhcccC----------Ceecccccccc---------cHHH
Confidence 345555566666666544 11 1456789999999999999997 577764 6777 9999
Q ss_pred HHHHhhhhhcchhHHHhccCCCCCccccccccccccc
Q 008560 102 VLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGV 138 (561)
Q Consensus 102 i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li 138 (561)
|...|-+ ..|-| ...-||. -++.+||-+||.=|
T Consensus 882 ikahlls-d~tDP--FNRmPLt-lddVtpn~eLrekI 914 (929)
T COG5113 882 IKAHLLS-DGTDP--FNRMPLT-LDDVTPNAELREKI 914 (929)
T ss_pred HHHHHhc-CCCCc--cccCCCc-hhhcCCCHHHHHHH
Confidence 9998854 45667 7777776 45788988887644
No 255
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.17 E-value=29 Score=30.42 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=58.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcCCC--HH--HHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDSSS--LE--MKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~--~~e~a~~~L~~La~ 221 (561)
...++.+..+|+++++..+..|+.-|-.+.+.. +.....+....++..|..++.+.. +. +++.++..|...+.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 556788899999999999999999887777765 566777778889999999887543 33 89999988877653
No 256
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=59.59 E-value=1.8e+02 Score=28.55 Aligned_cols=217 Identities=17% Similarity=0.149 Sum_probs=122.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcc----CchhhHHHHh------c-CChHHHHHhhcCC--CHHHHHHHHHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQE----DDKNVVIAVA------Q-GVVPVLVKLMDSS--SLEMKEKTVASIA 217 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~----~~~~~~~i~~------~-g~v~~Lv~lL~~~--~~~~~e~a~~~L~ 217 (561)
..|.-++.|.+....+=..|+.-|..+... ++..+..+.+ + |..+.+..++-.+ .+...+.++..|.
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~ 87 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS 87 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence 356667777776655556666666555443 3334443332 3 5555555554322 2446677888888
Q ss_pred HHhcCCc--------chHHHHHhchhhHHHHHHHHhcCC----HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHH
Q 008560 218 RVSMVDS--------SKHVLIAEGLLLLNHLIRVLESGS----GFAKERACVALQALSFSKENARAIGSRGGISSLLEIC 285 (561)
Q Consensus 218 ~La~~~~--------~~~~i~~~g~~~i~~Lv~lL~~~~----~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll 285 (561)
.|....+ .|-.+.--+ .+|.++.-+++++ .......|..|..++.... .+.+..++...
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la--~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~y 158 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLA--LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSY 158 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHH--HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHH
Confidence 8875321 232332344 5777777777776 1334466677777764311 11233333333
Q ss_pred hcCCh-HHH---HHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcH
Q 008560 286 QAGTP-GSQ---AFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGI 361 (561)
Q Consensus 286 ~~~~~-~~~---~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i 361 (561)
..+.- ... ..++..|+.-.. ++ .+...+..|+.+|..+...++...+.+|..+-..-+ .+.. .....+
T Consensus 159 a~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-~~~~-~~~dli 230 (262)
T PF14225_consen 159 AKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-MRSP-HGADLI 230 (262)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc-CCCC-cchHHH
Confidence 32221 112 233333332211 11 134567778999999999999999999998876543 2222 344479
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 362 GSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 362 ~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
.+++++++++. -..|+.+|.+..
T Consensus 231 spllrlL~t~~----~~eAL~VLd~~v 253 (262)
T PF14225_consen 231 SPLLRLLQTDL----WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHhCCcc----HHHHHHHHHHHH
Confidence 99999998844 345666665544
No 257
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.57 E-value=1.2e+02 Score=30.35 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=93.9
Q ss_pred HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch
Q 008560 147 AVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 147 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~ 226 (561)
.....+...+..|.+.+++.+.+++..|..|..-+.+...-+. ...|..+++=+++....+-..|+.++.-+...-.+
T Consensus 85 ~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~- 162 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN- 162 (334)
T ss_pred cHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455677888999999999999999999998876654333222 24566777777777777878888888776543211
Q ss_pred HHHHHhchhhHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 227 HVLIAEGLLLLNHLIRVLESG---SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
.+.+ . .=..+..+|..+ +..+++.|-.+|..+..+..... .++.|+..+++..+..+..++....+
T Consensus 163 -~i~~-~--ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 163 -SIDQ-E--LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred -HHHH-H--HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhccccc
Confidence 1211 1 122333444443 45689999999998877643322 35667777777777777666654443
No 258
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.06 E-value=3.2e+02 Score=31.10 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 324 GLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 324 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
..+.+..+.+...|+.++.++...... . +.. ++..|--++.+.. ...|-.|+++|-.++.
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r--~-l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSR--E-LAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHh--h-cch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHH
Confidence 344566778888999999888775532 1 111 3444444444433 4788889999988885
No 259
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=58.58 E-value=1.2e+02 Score=27.33 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=74.9
Q ss_pred hHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH
Q 008560 236 LLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI 314 (561)
Q Consensus 236 ~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~ 314 (561)
.++.|.++|+.+ +..+|..+.++|..|..-+..+......+ .+.-. -.+.+..... ..+.+.... ..-+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~---~~l~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTD---ISLPMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchh---hHHhhccCC-CchHHHH
Confidence 678888889887 78999999999999977655544322210 00000 0000000111 111111111 1223334
Q ss_pred hhhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 008560 315 EENAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQL 387 (561)
Q Consensus 315 ~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L 387 (561)
-..++..|+..|++.+- .-...++.++.++.... +.+-.-.=..+++.++..++..++ ..+|..+.-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l-~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL-GLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-CcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 44577788888876654 23345566666655321 111112223467778888876555 6666666555554
No 260
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.81 E-value=34 Score=30.02 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=59.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHhCcHHHHHHhhhcCCCHH---HHHHHHHHHHHhhc
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSDD-ESLKLLIVREGGIGSLKSYWDSVSAVK---SLEVAVELLSQLAS 389 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~~~~~~~---~~e~a~~aL~~L~~ 389 (561)
.++..|-+-|.++++.++..|+..|-.+..+. +.++..+.....+..|.+++.+..... +++.++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 35666778888899999999999988888754 568888888889999999998755444 89999988888774
No 261
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.99 E-value=2e+02 Score=28.24 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=102.9
Q ss_pred CCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCCch--------hhHHHHhhhhHHHHHHHhhcCC----HHHHHHHHHHH
Q 008560 276 GGISSLLEICQAG--TPGSQAFAAGVLRNLAGFSE--------IKENFIEENAVMVLLGLVASGT----ALAQENVFGCL 341 (561)
Q Consensus 276 g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~~~--------~r~~i~~~g~v~~Lv~lL~~~~----~~~~~~a~~~L 341 (561)
|..+.|..++-.| ++...+.+...|..|...++ .|-.+.=.+.+|-++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 3444444444443 45566778888888866432 3333334456666777776666 23445667777
Q ss_pred HHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHhcchHHHHHHHhcCCCHHHHH
Q 008560 342 CNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CLPIAEVLVSDGFVVRLVNVLNCGVLSVRI 419 (561)
Q Consensus 342 ~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 419 (561)
..+|.... ...+..++............+-.-.+...++. +|+. +...+..|+.+|.++...++.
T Consensus 140 a~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 77764221 11233233222222222344444444445543 2332 234567888999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 420 AAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 420 ~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
....+|..+-...+.++. .....+.+|.++++.+.. ..|.++|....
T Consensus 207 ~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 999999999875444433 334578999999985543 33555555544
No 262
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.51 E-value=3.1e+02 Score=30.18 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=68.2
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHH
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
.|.+..+++-+.+++..++..++.+|..+...-..-...+..| .+..|..-+-...+-+|..|..+|..+-....+-+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~--L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANG--LLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 4677778888889999999999999988874432223344456 66666655556677789999999987755432222
Q ss_pred HHHhcCCHHHHHHHHhcC-ChHHHHHHHHHHHHhhCCc
Q 008560 271 AIGSRGGISSLLEICQAG-TPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~-~~~~~~~A~~aL~nLs~~~ 307 (561)
-. ....|+.++++. +.+++.. +|.|+..++
T Consensus 168 n~----~~n~l~~~vqnDPS~EVRr~---allni~vdn 198 (885)
T COG5218 168 NR----IVNLLKDIVQNDPSDEVRRL---ALLNISVDN 198 (885)
T ss_pred HH----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCC
Confidence 11 233566666654 3344443 355554433
No 263
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.65 E-value=92 Score=34.71 Aligned_cols=134 Identities=13% Similarity=0.196 Sum_probs=88.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCCch
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRV-LESGSGFAKERACVALQALSFSKEN 268 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~~~ 268 (561)
.+..+|.|.+-+++.+..+|+.++.++..++..-+ ...++.- .+|.+-.+ +++.+..++.+++.++..+. +.
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~--ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQA--ILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QR 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHH--HHHHhhcchhcccchHHHHHHHHHHHHHH---HH
Confidence 45667888888888899999999999988875433 3444555 66666555 34557888999999999887 22
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCC
Q 008560 269 ARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGT 330 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~ 330 (561)
.+...-..-+.++.+-.+..+|........+..++......+..+..+.++|.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 22111112244444444566788877777777777665544344445567777777766554
No 264
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=55.52 E-value=19 Score=29.95 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHH
Q 008560 376 SLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVR 418 (561)
Q Consensus 376 ~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~ 418 (561)
-....+..+..|+..|+-...+++.|+++.|+.+|.+.+..+.
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 4567788899999999999999999999999999998876543
No 265
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=54.75 E-value=2.5e+02 Score=28.59 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=104.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhC-Cc-hhhHHHHhh-h-hHHHHHHHhhcC-----C--------HHHHHHHHHH
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLRNLAG-FS-EIKENFIEE-N-AVMVLLGLVASG-----T--------ALAQENVFGC 340 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~nLs~-~~-~~r~~i~~~-g-~v~~Lv~lL~~~-----~--------~~~~~~a~~~ 340 (561)
++.+.+.+.+..+.....+++.|..++. ++ ...+.+.+. . -.+.|-+++... . .++|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5666666766666677788888888877 44 344444433 1 234455555311 1 1677788777
Q ss_pred HHHhcC-CChHHHHHHHHh-CcHHHHHHhhhcCCCHHHHHHHHHHHHH-hhc----ChhhHHHHHhcchHHHHHHHhcCC
Q 008560 341 LCNLVS-DDESLKLLIVRE-GGIGSLKSYWDSVSAVKSLEVAVELLSQ-LAS----CLPIAEVLVSDGFVVRLVNVLNCG 413 (561)
Q Consensus 341 L~~L~~-~~~~~r~~~~~~-g~i~~Lv~lL~~~~~~~~~e~a~~aL~~-L~~----~~~~~~~l~~~~~i~~Lv~lL~~~ 413 (561)
+..+.. +++..++.+.+. +.+..+.+.+..+ ++++....+..|.. +.. ....+-.+.+..++..|+.+....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 666654 556677776654 5678888888874 45788888888874 433 234456677778899999988766
Q ss_pred CH----HHHHHHHHHHHHHcCCHH
Q 008560 414 VL----SVRIAAARAVSMLGINSK 433 (561)
Q Consensus 414 ~~----~~~~~A~~aL~~L~~~~~ 433 (561)
++ .+.+.+-..|..+|+++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 889999999999998654
No 266
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.71 E-value=4.1e+02 Score=31.06 Aligned_cols=295 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred CChHHHHHhhc--------CCCHHHHHHHHHHHHHHhc---CCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 008560 192 GVVPVLVKLMD--------SSSLEMKEKTVASIARVSM---VDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQ 260 (561)
Q Consensus 192 g~v~~Lv~lL~--------~~~~~~~e~a~~~L~~La~---~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 260 (561)
|.++.++..|. ..++.-.+-|+.++++|+. ..+.-+..++.= .+..+.-.+++...-.|.+||+.+.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f--lv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF--LVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH--HHHHhhHhhcCchhHHHHHHHHHHH
Q ss_pred HhcCCCchHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh----cCCHHHHH
Q 008560 261 ALSFSKENARAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA----SGTALAQE 335 (561)
Q Consensus 261 ~Ls~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~----~~~~~~~~ 335 (561)
..+.- +-+..-.-..+++.-.+.+. +..-.++-.|+-||..+-.+.+.-..-+.+.+.+.+=++|. -+.+.+..
T Consensus 488 ~~~~~-df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 488 QFSSI-DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHHhc-cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhh----hcCCCHHHHHHHHHHHHHhhc---ChhhHHHHHhc---chHHH
Q 008560 336 NVFGCLCNLVSDDESLKLLIVREGGIGSLKSYW----DSVSAVKSLEVAVELLSQLAS---CLPIAEVLVSD---GFVVR 405 (561)
Q Consensus 336 ~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL----~~~~~~~~~e~a~~aL~~L~~---~~~~~~~l~~~---~~i~~ 405 (561)
-.=..+...+..=..+-..+.+.=+-.-+--+. ..+.+..-.-.|.++|..+.. +-+....+... -+++.
T Consensus 567 vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCC
Q 008560 406 LVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDER 484 (561)
Q Consensus 406 Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~ 484 (561)
+-.+|.+.-.++=+.+...+..+.. +++....| -|..+.+.+..+...-.--....-+|.|......+ .+.....
T Consensus 647 i~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~--~~~s~~~ 722 (1010)
T KOG1991|consen 647 IGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP--SLLSNPD 722 (1010)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch--hhhccch
Q ss_pred CHHHHHHhc
Q 008560 485 GIVTVVQLL 493 (561)
Q Consensus 485 ~i~~Lv~lL 493 (561)
-...++.++
T Consensus 723 y~~il~~i~ 731 (1010)
T KOG1991|consen 723 YLQILLEII 731 (1010)
T ss_pred HHHHHHHHH
No 267
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.26 E-value=3e+02 Score=33.74 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=65.6
Q ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHhhCCch-h-hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHH
Q 008560 277 GISSLLEICQAGTPGSQAFAAGVLRNLAGFSE-I-KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLL 354 (561)
Q Consensus 277 ~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~-~-r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 354 (561)
.+..++..+....+..+..|.++|.++...+. + ....+.+|+ ..-+.+....+++.|+..+.......++.-..
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 35566677777778889999999999987663 2 223333333 34455667789999999998766655432222
Q ss_pred HHHhCcHHHHH-HhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 355 IVREGGIGSLK-SYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 355 ~~~~g~i~~Lv-~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
..+ .+. +++++ +..+|..++++++.+|.
T Consensus 893 yY~-----~i~erIlDt--gvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 893 YYD-----QIIERILDT--GVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHH-----HHHhhcCCC--chhHHHHHHHHHHHHHH
Confidence 221 111 22222 34688999999999985
No 268
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=52.86 E-value=11 Score=39.80 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH-hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI-EENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
...|-.++.+.++..+..|..++.+++.+.++|+..+ ....-..+++++.....++-+.++.++..+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4455566778899999999999999999998887665 55566677888877777777778877777664
No 269
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=52.76 E-value=3.7e+02 Score=29.98 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHh---cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhH
Q 008560 161 IGSAESKNSAMDSLLGLLQEDDKNVVIAVA---QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLL 237 (561)
Q Consensus 161 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~---~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i 237 (561)
.-.++.+.-|++.|+-+..+..-+-..+-. ...+..++..+. .++..+.-++++|.|+-.+...++.+...-...+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 334566778888777776665444333321 234555555554 4467788899999999888766666654211133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhhCCchhh
Q 008560 238 NHLIRVLESGSGFAKERACVALQALSFS--KENARAIGSRGGISSLLEICQAG-----TPGSQAFAAGVLRNLAGFSEIK 310 (561)
Q Consensus 238 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~A~~aL~nLs~~~~~r 310 (561)
.+++..=...+..++...+....|++.. .++-. .++.+.|...+... +-++....+.||.+|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 3333332223456666555555555432 11111 34555555555432 2234556677888999988888
Q ss_pred HHHHhhhhHHHHHHHhhc
Q 008560 311 ENFIEENAVMVLLGLVAS 328 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~~ 328 (561)
.++...--|..+++-+.+
T Consensus 710 ~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 888777677777777654
No 270
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=51.43 E-value=19 Score=34.76 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=62.2
Q ss_pred cccccccchhhhHHHHHHhhhHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHH
Q 008560 23 IPLVKHFKGKWVIVKTKLNDLETQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSV 102 (561)
Q Consensus 23 ~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i 102 (561)
+..++.+.++.+.++.||+++... ..+|.-....+-..++.-+..+|=+.++=|.+|+.. |+-.|+-|+..+
T Consensus 91 s~YVd~l~~~~~~f~~rL~~i~~~----~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~e----GRalM~lD~q~~ 162 (234)
T PF10474_consen 91 SSYVDQLVQEFQQFSERLDEISKQ----GPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNE----GRALMQLDFQQL 162 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh----hHHHHHHHHHHH
Confidence 345666888888888888887732 235655667777778888888999999999999966 999999999999
Q ss_pred HHHhhh
Q 008560 103 LAKLDR 108 (561)
Q Consensus 103 ~~~l~~ 108 (561)
...|+.
T Consensus 163 ~~~le~ 168 (234)
T PF10474_consen 163 QNKLEK 168 (234)
T ss_pred HHHHHH
Confidence 999874
No 271
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.27 E-value=1.2e+02 Score=33.93 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=71.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhc------chHHHHHHHhcCCCHHHHHHHHHHHHHHcC-C--
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSD------GFVVRLVNVLNCGVLSVRIAAARAVSMLGI-N-- 431 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~------~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~-- 431 (561)
...++++|++.+- ..+-..+.+.+|+...-..-.+++++ ..+..|++-+.+.++-++..|...+..++. +
T Consensus 301 ~~~~~~LLdses~-tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESF-TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccch-hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 4567778877654 56666677777776421111123331 346666666777789999999999999986 2
Q ss_pred -HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 432 -SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 432 -~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
+.-+.++ +...+.-+++.+.-||+.|..++..|..
T Consensus 380 ~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 3344444 4455667788899999999999988874
No 272
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=50.11 E-value=3.9e+02 Score=29.97 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=142.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHh
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAE 232 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~ 232 (561)
-..+..++..+.+.|.+=...|..... ..-..++..-.++.|+..+..++ .-...+..+..+..+-+... ...
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~ 329 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQV 329 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--ccc
Confidence 334555666667777665555544222 12223344555666666665544 11112222333322211111 455
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHH
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKEN 312 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~ 312 (561)
+ .++.|+++++..+..+|..-..-+..... .-...+.+.-.++.+..-+.+.++..++..+..+..|+.--.-+
T Consensus 330 ~--i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 R--IIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred c--hhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 6 89999999999988877654443333322 12234555667888988899999999999999998887533222
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCc-HHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh
Q 008560 313 FIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGG-IGSLKSYWDSVSAVKSLEVAVELLSQLASCL 391 (561)
Q Consensus 313 i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~-i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~ 391 (561)
-..-..+..|.++-.+.+..++.+..-||..++..... .++.++ +....+-++++-. ..+..++.+++..+...
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~----~~R~~vL~~aftralkdpf~-paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA----SVRKRVLASAFTRALKDPFV-PARKAGVLALAATQEYF 478 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccch----hhhccccchhhhhhhcCCCC-CchhhhhHHHhhccccc
Confidence 22223445555555556667888889899888876421 113333 3344454444332 45666666666666422
Q ss_pred hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 008560 392 PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSML 428 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 428 (561)
+..+. ...+++.++-+.-+.+..++..|-.++..+
T Consensus 479 ~~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 479 DQSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred chhhh--hhhccccccccccCcccchhhHHHHHHHHH
Confidence 22111 123455555555555556666665555444
No 273
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.90 E-value=2.9e+02 Score=27.11 Aligned_cols=216 Identities=14% Similarity=0.122 Sum_probs=120.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcchHHHHH
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMVDSSKHVLIA 231 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~~~~~~i~~ 231 (561)
.|=..|.+++...|.+|+..|...+..=+... ....-|..|+.++.+. |......++.++..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 34456778888899999999988887655332 2333467777765432 4444444566666665332211111 1
Q ss_pred hchhhHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcC-ChHHHHHHHHHHHHhhCC
Q 008560 232 EGLLLLNHLIRVLE--SGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAG-TPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 232 ~g~~~i~~Lv~lL~--~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~A~~aL~nLs~~ 306 (561)
.. .+..+.+-.. +-....|..+-.+|..|..+.. ..+.. .+.+..++.++..+ +|+....+...+..+...
T Consensus 79 ~~--i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 79 VK--ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HH--HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 11 2222222111 2245678888888888866532 22222 34577777777654 788777777777766544
Q ss_pred chhhHHHHhhhhHHHHHHHhhc----------CCH--HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCH
Q 008560 307 SEIKENFIEENAVMVLLGLVAS----------GTA--LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAV 374 (561)
Q Consensus 307 ~~~r~~i~~~g~v~~Lv~lL~~----------~~~--~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~ 374 (561)
-+. ...++.+.+.+.. +++ -.++.-...|.+.-...+ .+..-+++.|+.-|.++..
T Consensus 155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~~~- 222 (262)
T PF14500_consen 155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDSTSP- 222 (262)
T ss_pred ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCCCc-
Confidence 332 2344445555431 111 123333333333333222 2334578889988888765
Q ss_pred HHHHHHHHHHHHhhc
Q 008560 375 KSLEVAVELLSQLAS 389 (561)
Q Consensus 375 ~~~e~a~~aL~~L~~ 389 (561)
.++..++.+|...+.
T Consensus 223 ~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 223 SVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688888888887664
No 274
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.58 E-value=52 Score=29.18 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
|.+|++++.+.++.....|+.+|.+-...
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 88888888877778888888888776544
No 275
>PLN03205 ATR interacting protein; Provisional
Probab=45.54 E-value=1.2e+02 Score=31.35 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH----HhhCCchhhHHHHhhhhHHHH---HHHh-hcCCHHHHHHHHHHHHHhcCCC-
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLR----NLAGFSEIKENFIEENAVMVL---LGLV-ASGTALAQENVFGCLCNLVSDD- 348 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~----nLs~~~~~r~~i~~~g~v~~L---v~lL-~~~~~~~~~~a~~~L~~L~~~~- 348 (561)
+++|+.+|.-++......++++|. +++.+..--+.-.+.+-+..+ .+.- ....+.++..|+.++.-+....
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 678888888888777766666554 444443322222344444322 2221 1344467777777666555432
Q ss_pred -hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHH
Q 008560 349 -ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEV 396 (561)
Q Consensus 349 -~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~ 396 (561)
-.-|+.+...-+++.+-.+|+......++..++..|.-|-.||.....
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~i 453 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDR 453 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHH
Confidence 233556666678889999998876668888888888777666544333
No 276
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=44.97 E-value=1.6e+02 Score=27.22 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC----CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchh
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI----NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRK 477 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~ 477 (561)
+++.++++..+.+..++..|+..+..+.. +|.. ++|.|+.|..++++.++..|...+..+....+.--
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Q ss_pred hHhhcCCCHHHHHHhccCCccchh------hHHHHHHHHHhc-CCchHHHHHHHc
Q 008560 478 ILRKDERGIVTVVQLLDPLIQNLD------KKYPVAILAALV-HCRKCRKQMVAA 525 (561)
Q Consensus 478 ~~~~~~~~i~~Lv~lL~~~~~~~~------k~~a~~~L~~La-~~~~~r~~i~~~ 525 (561)
.- +-..|+..-.+.-..-.+... ...-.+-+..+. .+...|+.++.+
T Consensus 81 ~~-~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~ 134 (187)
T PF12830_consen 81 ES-RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKS 134 (187)
T ss_pred HH-HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHH
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=44.32 E-value=2.1e+02 Score=26.40 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=46.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcch----HHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 362 GSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGF----VVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 362 ~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~----i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
..|+..++.+.+.......+++|..|.. .|-.+- +.|. +..+..++.+.+..++..+..++..+..
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 5667777777767788899999999986 333321 1244 4445556677888999999888888765
No 278
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.01 E-value=4.2e+02 Score=29.47 Aligned_cols=166 Identities=20% Similarity=0.143 Sum_probs=90.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-c-hHHHHHhcCCHHHHHHHHhc----CChHHHHHHHHHHHHhhC----
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSK-E-NARAIGSRGGISSLLEICQA----GTPGSQAFAAGVLRNLAG---- 305 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~A~~aL~nLs~---- 305 (561)
++..+.+++.++..... .|+..|..|.... . +.. .+..+.+++.. .++..+..|.-++..+..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 67777888877643322 3555666654432 2 222 24455555543 344555666666555532
Q ss_pred Cc------hhhHHHHhhhhHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC--CC
Q 008560 306 FS------EIKENFIEENAVMVLLGLVA----SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV--SA 373 (561)
Q Consensus 306 ~~------~~r~~i~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~--~~ 373 (561)
.. ..+...+-...++.|...+. .++..-+..++.+|.|+... ..++.|..++... .+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccc
Confidence 21 11122223345555555554 45557778888888887532 3678888888765 45
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 008560 374 VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC--GVLSVRIAAARAVSM 427 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~ 427 (561)
..++-.|+.+|+.++. +++. +.+.+..++.+ .+.++|..|..+|..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6788899999998865 3322 34556665543 356888888766654
No 279
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.83 E-value=5.3 Score=37.72 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=42.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh--hcchhHHHhccCCCCCccccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH--VRDGDVLIKSGVLQDGDVLIKSG 132 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~--~~~cp~l~t~~~l~~~~~lipN~ 132 (561)
.+|+|=||+|.-+|+ |-.|.|+=| =..-|-+||+.. ..-|| |-++... .+.+||=+
T Consensus 46 ~~FdCNICLd~akdP----------VvTlCGHLF---------CWpClyqWl~~~~~~~~cP--VCK~~Vs-~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP----------VVTLCGHLF---------CWPCLYQWLQTRPNSKECP--VCKAEVS-IDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCC----------EEeecccce---------ehHHHHHHHhhcCCCeeCC--ccccccc-cceEEeee
Confidence 799999999999985 444556778 789999999863 56679 7777665 34566643
No 280
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=42.01 E-value=1.8 Score=29.40 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhc---chh
Q 008560 59 NTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVR---DGD 114 (561)
Q Consensus 59 ~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~---~cp 114 (561)
|||+++++.+ ||+.--|++| =++-|.+|.+.... .||
T Consensus 1 CpiC~~~~~~----------Pv~l~CGH~F---------C~~Cl~~~~~~~~~~~~~CP 40 (42)
T PF15227_consen 1 CPICLDLFKD----------PVSLPCGHSF---------CRSCLERLWKEPSGSGFSCP 40 (42)
T ss_dssp ETTTTSB-SS----------EEE-SSSSEE---------EHHHHHHHHCCSSSST---S
T ss_pred CCccchhhCC----------ccccCCcCHH---------HHHHHHHHHHccCCcCCCCc
Confidence 7999999996 6998889999 78889998866433 365
No 281
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.86 E-value=74 Score=31.84 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=47.9
Q ss_pred chHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--------------hhhHHHHhcCChHHHHHhhcC
Q 008560 144 KREAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDD--------------KNVVIAVAQGVVPVLVKLMDS 203 (561)
Q Consensus 144 ~~~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--------------~~~~~i~~~g~v~~Lv~lL~~ 203 (561)
....-...+..++..|..++.+.|..|+..|.-++.+.- +|...+.+.|++++|+.+|..
T Consensus 54 ~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 54 SFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred chhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344556789999999999999999999999998887521 455667788999999988853
No 282
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=9.5 Score=43.71 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=62.0
Q ss_pred cchhhhHHHHHHhhhHhh----hcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCcchhhhhHHHHH
Q 008560 29 FKGKWVIVKTKLNDLETQ----LKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKC-QGVSLTEGKLKTQSDIDSVL 103 (561)
Q Consensus 29 f~~~~~~~~~~~~~l~~~----l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c-~~~~y~~g~l~~~sd~~~i~ 103 (561)
+.++-+.+..|+++.... .-.++++|..|..|+--.+|.| ||... .+.+- ||..|+
T Consensus 839 ~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~d----------PV~LP~Srv~v---------DRsti~ 899 (943)
T KOG2042|consen 839 QIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSD----------PVVLPSSRVTV---------DRSTIE 899 (943)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCC----------CccCCcccccc---------cHHHHH
Confidence 455556666666665443 2344579999999998889996 67777 56666 999999
Q ss_pred HHhhhhhcchhHHHhccCCCCCcccccccccccccc
Q 008560 104 AKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGVV 139 (561)
Q Consensus 104 ~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li~ 139 (561)
+.|=+ ||--.+...+|. .+.++||-+|+.=|+
T Consensus 900 rhlLs---~~tdPFNR~pLt-~d~v~pn~eLK~kI~ 931 (943)
T KOG2042|consen 900 RHLLS---DCTDPFNREPLT-EDMVSPNEELKAKIR 931 (943)
T ss_pred HHHhc---CCCCccccccCc-hhhcCCCHHHHHHHH
Confidence 99854 442227888887 457888888866543
No 283
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.99 E-value=5.9e+02 Score=28.05 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=84.5
Q ss_pred hHHHHHHHHhcC----CHHHHHHHHHHHHHhcC----CCchHHHHHhcCCHHHHHHHHhc----CChHHHHHHHHHHHHh
Q 008560 236 LLNHLIRVLESG----SGFAKERACVALQALSF----SKENARAIGSRGGISSLLEICQA----GTPGSQAFAAGVLRNL 303 (561)
Q Consensus 236 ~i~~Lv~lL~~~----~~~~~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~A~~aL~nL 303 (561)
.+..+..+++++ ...++..|..++.++.. +.+.+........++.|.+.+.. ++...+...+.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 666667777653 45667777777766643 22211111112345666655543 3555567788888887
Q ss_pred hCCchhhHHHHhhhhHHHHHHHhh-c--CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHHH
Q 008560 304 AGFSEIKENFIEENAVMVLLGLVA-S--GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLEV 379 (561)
Q Consensus 304 s~~~~~r~~i~~~g~v~~Lv~lL~-~--~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~ 379 (561)
... ..++.|..++. . .+..++..|+.+|..++...+. .+-+.|+.++.+ ..++++|..
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHH
Confidence 543 34555566665 2 2336899999999988754332 234456666654 445577776
Q ss_pred HHHHHHHhhcChhhHHHHHhcchHHHHHHHhcC
Q 008560 380 AVELLSQLASCLPIAEVLVSDGFVVRLVNVLNC 412 (561)
Q Consensus 380 a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~ 412 (561)
|+.+|...- |. ...+..+...+..
T Consensus 536 A~~~lm~t~--P~-------~~~l~~ia~~l~~ 559 (574)
T smart00638 536 AVLVLMETK--PS-------VALLQRIAELLNK 559 (574)
T ss_pred HHHHHHhcC--CC-------HHHHHHHHHHHhh
Confidence 666655431 11 1345666665544
No 284
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=37.83 E-value=79 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh---hcchhHHH
Q 008560 57 ASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH---VRDGDVLI 117 (561)
Q Consensus 57 ~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~---~~~cp~l~ 117 (561)
..-+|++|.+-+..+.|+.+.. ..+. +-.+...|+|.+ +.+|+-.+
T Consensus 20 ~~~~iske~iLe~~~~L~~~l~------~~s~---------~~~s~sq~lD~~~~L~~~C~~ya 68 (126)
T smart00808 20 PSDAISKDMILELTELLESALS------SSSE---------QPASHSQWLDKGHQLHSTCSGYA 68 (126)
T ss_pred CcccchHHHHHHHHHHHHHhhc------cCcC---------CcchHHHHHHHHHHHHHhhhhHH
Confidence 4558999988888888888774 2222 345778899876 78898443
No 285
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.20 E-value=2.1e+02 Score=23.79 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHHH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMD------SSSLEMKEKTVASIARV 219 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~------~~~~~~~e~a~~~L~~L 219 (561)
....+..+..+|.+.++..+..|+.-|-.+++.. ++....+....+...++.+.. ..+..+++.+...+...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3456777888999999999999999988888854 566666777666666655311 12467888887776554
No 286
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=37.04 E-value=1.3e+02 Score=25.83 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhc-CChHHHHHhhcCCC--------HHHHHHHHHHH
Q 008560 147 AVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDD-KNVVIAVAQ-GVVPVLVKLMDSSS--------LEMKEKTVASI 216 (561)
Q Consensus 147 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~-g~v~~Lv~lL~~~~--------~~~~e~a~~~L 216 (561)
.......-|..+|+..++-.|.+++..|..++.... ..+..+... ..|..+..+=...+ ..+|+.|-.++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 344566778899998888999999999999887544 455554432 44444444432122 35666666666
Q ss_pred HHHh
Q 008560 217 ARVS 220 (561)
Q Consensus 217 ~~La 220 (561)
..|-
T Consensus 115 ~~if 118 (122)
T cd03572 115 KAIF 118 (122)
T ss_pred HHHh
Confidence 5543
No 287
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.92 E-value=1.5e+02 Score=26.07 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=53.8
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHH-HHHhccC---CCHHHHHHHHHHHHHhhc
Q 008560 402 FVVRLVNVLNC-GVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGP-LIKMLDG---KAVEEKESAAKALSTLML 471 (561)
Q Consensus 402 ~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~-Lv~ll~~---~~~~v~~~A~~aL~~L~~ 471 (561)
++..|-+-|.. .++.++..|...|-.+..| .....++...+++.. |++++.. .+..|+.+...++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45667776664 5788888888888777753 678888888899997 9999973 245889999998887774
No 288
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.76 E-value=2.1e+02 Score=32.31 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=70.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhH
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKIL 479 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 479 (561)
.+|+.|..+-...=..++..++..++.+.++ ++.-..+ +..||.-+.+....+-..|...|-.|...++|.+.+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3555555555555568899999999998875 4543333 455666677777888888999999999888888777
Q ss_pred hhcCCCHHHHHHhc-cCCccchhhHHHHHHHHHhc
Q 008560 480 RKDERGIVTVVQLL-DPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 480 ~~~~~~i~~Lv~lL-~~~~~~~~k~~a~~~L~~La 513 (561)
+. ..+..++ .|+-+...+-||+..|..+.
T Consensus 379 vi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VI-----DEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hH-----HHHHHHHcccCccccceeehhhhhhhhH
Confidence 43 3444544 55434445667888886664
No 289
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=35.67 E-value=4e+02 Score=25.50 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc
Q 008560 291 GSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS 370 (561)
Q Consensus 291 ~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~ 370 (561)
.-...++..+..|...++....+.+.+.++.+.+.|..-++. .-....++ ++..
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~---------~g~~~~~~-----------------lfs~ 132 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPM---------SGITAHDP-----------------LFSP 132 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhh---------cCCccccc-----------------ccCH
Confidence 334667777788887777666666788888888877643220 00000000 0000
Q ss_pred C-CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHH
Q 008560 371 V-SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECGCIGPLI 448 (561)
Q Consensus 371 ~-~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv 448 (561)
. -......-=...|+.|+.++.|.+.+-+.++...+.++....+. ......++.+|=.+ +.+.+.+ |-
T Consensus 133 ~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~i--------Ls 202 (226)
T PF14666_consen 133 QRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRII--------LS 202 (226)
T ss_pred HHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHHH--------HH
Confidence 0 00133444567888999999999888888999999998876533 22222344444332 2233332 34
Q ss_pred HhccCCCHHHHHHHHHHHHHhh
Q 008560 449 KMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 449 ~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
+.|.+++..+|..|..-|..+.
T Consensus 203 KaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 203 KALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh
Confidence 5566788899999999887765
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.04 E-value=1.8e+02 Score=24.98 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=50.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhC-CChHHHHHhccC--------CCHHHHHHHHHHHHHhh
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGEC-GCIGPLIKMLDG--------KAVEEKESAAKALSTLM 470 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~-g~i~~Lv~ll~~--------~~~~v~~~A~~aL~~L~ 470 (561)
++..|.+-|.+.++-++..+..+|-.+|. +++.+..+.+. -.|..+...-.. ....||..|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45777888888889999999999999997 56777776654 345555555441 13468888888887765
Q ss_pred c
Q 008560 471 L 471 (561)
Q Consensus 471 ~ 471 (561)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 291
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.83 E-value=2.3e+02 Score=23.60 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=51.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhcc------CCCHHHHHHHHHHHHHh
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLD------GKAVEEKESAAKALSTL 469 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~------~~~~~v~~~A~~aL~~L 469 (561)
++..|.+-|.+.++.++..|...|-.+.. ++.....+.....+..++.+.. ..+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 56777777888899999999999999986 4678888888777777766411 23678899888877543
No 292
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.14 E-value=27 Score=24.99 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.0
Q ss_pred CccchhhHHHHHHHHHHH
Q 008560 56 AASNTLCLDHVHSVSHTL 73 (561)
Q Consensus 56 ~~~~p~~~~~~~~~~~~l 73 (561)
..-||||+..++|+++|-
T Consensus 43 ~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIKTY 60 (62)
T ss_pred CCcCcchhhHHHHHHHhh
Confidence 367999999999998763
No 293
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=33.64 E-value=4.7e+02 Score=29.42 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=88.4
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhh
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPI 393 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~ 393 (561)
+.+.+++.|..-+++.+..+|+.++..+-..+..- --..++.-.++.+-.+....+...++..++.++..+...
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i---D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~--- 459 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESI---DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR--- 459 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc---cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---
Confidence 44567788888888888899999888887776532 244566677777777755555667888888888887731
Q ss_pred HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHH
Q 008560 394 AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKE 460 (561)
Q Consensus 394 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 460 (561)
.+...-..-+.++.+-.+..++.+......+..++.......+++.-+.++|.++-+...+.-...+
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 1111111234455555556677777777766666665322223444455677777776655433333
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.48 E-value=3.9e+02 Score=26.41 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=46.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hHH-HHHhcCCHHHHHHHH----h--------cCChHHHHHHHHHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKE-NAR-AIGSRGGISSLLEIC----Q--------AGTPGSQAFAAGVLR 301 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~-~i~~~g~i~~Lv~ll----~--------~~~~~~~~~A~~aL~ 301 (561)
.+|+++.++++.++..|..++.+|..+...-. ..+ .+...|..+.+-+.+ . +.+...-..+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 79999999999999999999999999987533 222 344566554444433 2 223344466666666
Q ss_pred Hhh
Q 008560 302 NLA 304 (561)
Q Consensus 302 nLs 304 (561)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 295
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.42 E-value=2.1e+02 Score=29.08 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcc--hHHHHHHHhcCC---CHHHHHHHHHHHHHHcCC----HHHHHHH---HhCCC
Q 008560 376 SLEVAVELLSQLASCLPIAEVLVSDG--FVVRLVNVLNCG---VLSVRIAAARAVSMLGIN----SKARKEM---GECGC 443 (561)
Q Consensus 376 ~~e~a~~aL~~L~~~~~~~~~l~~~~--~i~~Lv~lL~~~---~~~~~~~A~~aL~~L~~~----~~~~~~i---~~~g~ 443 (561)
++-.|+..+.++...+.....+...+ ++..|+++++.+ ...++..|..+|..++.. .+....+ +.+|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44455566655566667777888765 999999999765 458999999999999974 2333333 23455
Q ss_pred hHHHHH
Q 008560 444 IGPLIK 449 (561)
Q Consensus 444 i~~Lv~ 449 (561)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555543
No 296
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.19 E-value=2e+02 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=17.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
|++|+.+|.++++ .+...|..+|.+-.
T Consensus 96 V~~LI~~L~~~d~-~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDE-ELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-T-TTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcH-HHHHHHHHHHHhhH
Confidence 7888998876554 67778888887754
No 297
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.16 E-value=3.5e+02 Score=29.21 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-C-------------hhhHHHHHhcchHHHHHHHhcC-CC
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-C-------------LPIAEVLVSDGFVVRLVNVLNC-GV 414 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~-------------~~~~~~l~~~~~i~~Lv~lL~~-~~ 414 (561)
....-+.+.+.|+.|+.+|.+..+...+..|...|..+.+ + .+-...+.+...|..|+..+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 3455566789999999999988888899999888777753 1 1224456666888888885542 33
Q ss_pred HHHHHHHHHHHHHHcC
Q 008560 415 LSVRIAAARAVSMLGI 430 (561)
Q Consensus 415 ~~~~~~A~~aL~~L~~ 430 (561)
.....+++.++..|..
T Consensus 133 ~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 133 GSSLVNGVSILIELIR 148 (475)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4555666677776654
No 298
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.94 E-value=7e+02 Score=27.46 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=66.9
Q ss_pred hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHH
Q 008560 358 EGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGINSKARK 436 (561)
Q Consensus 358 ~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~ 436 (561)
.|++..|+.+--++.+..+++.|+.+|+.+|-.+ ...+...+++|. +.+.-++...+.+|.-.|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3567778877433333489999999999998532 235666677664 5678888888888888776432111
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 437 EMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 437 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
++..|-.++.+.++-+|+.|+-++..+.
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 2345555666777778888777776665
No 299
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.66 E-value=2.9e+02 Score=24.24 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQI-GSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPV-LVKLMDS---SSLEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~-Lv~lL~~---~~~~~~e~a~~~L~~La~ 221 (561)
...++.+..+|+. .++.....|+.-|-.+++.. ......|+..+++.. |++++.. ....++...+..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4567778888875 47888888988777777654 456677888899997 9999963 235889999988887763
No 300
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=31.10 E-value=2.1e+02 Score=31.93 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=88.9
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--Ch
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CL 391 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~ 391 (561)
...+.++++++++...+..+|..-+.-+.+... .+...+++.-+.+.+..-+.+.+ +.+++.++..+..|+. +.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhch
Confidence 456789999999998888777655544444332 24455667777888887776655 4899999999999985 32
Q ss_pred hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 008560 392 PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTL 469 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L 469 (561)
.+ .+...+..+..+-.+....++.+...+|.+++.. +..|+.+. +..+..-+++.-...|.++..+|+..
T Consensus 403 ~~----Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL----~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 403 RN----LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL----ASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hh----hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcccc----chhhhhhhcCCCCCchhhhhHHHhhc
Confidence 21 1111223333222233456777777777777652 22322221 33444445555555666666666555
Q ss_pred hcccc
Q 008560 470 MLYAG 474 (561)
Q Consensus 470 ~~~~~ 474 (561)
...-+
T Consensus 475 ~~~~~ 479 (690)
T KOG1243|consen 475 QEYFD 479 (690)
T ss_pred ccccc
Confidence 44333
No 301
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=30.74 E-value=21 Score=28.80 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=43.4
Q ss_pred cccccchhhhHHHHHHhhhHhhhcccC--CCCCCccchhhHHHHHHHHHHHHHH
Q 008560 25 LVKHFKGKWVIVKTKLNDLETQLKDFS--DFPAAASNTLCLDHVHSVSHTLIEA 76 (561)
Q Consensus 25 ~~~~f~~~~~~~~~~~~~l~~~l~~~~--~~p~~~~~p~~~~~~~~~~~~l~~~ 76 (561)
+...|-..|+.++..-+....-|.++. ..|.+|..-+.-+++.+++++|...
T Consensus 6 ~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~ 59 (94)
T PF13877_consen 6 NSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEH 59 (94)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 345699999999888888888888876 5668899999999999998888753
No 302
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=30.38 E-value=5.9e+02 Score=25.76 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=80.7
Q ss_pred chHHHHHHHhc-CC---CHHHHHHHHHHHHHHcC-CHHHHHHHHhC-----------CChHHHHHhcc------CCCHHH
Q 008560 401 GFVVRLVNVLN-CG---VLSVRIAAARAVSMLGI-NSKARKEMGEC-----------GCIGPLIKMLD------GKAVEE 458 (561)
Q Consensus 401 ~~i~~Lv~lL~-~~---~~~~~~~A~~aL~~L~~-~~~~~~~i~~~-----------g~i~~Lv~ll~------~~~~~v 458 (561)
.++..|+.++- .. ...+|.+|..++..++. |++.+..+.+. .....|+..|- +.++.-
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 34555665442 22 35888999999999987 67788777541 11222444443 234434
Q ss_pred HHHHHHHHHHhhccccchhhHhhc------CCC------HHHHHHhccCC-ccchhhHHHHHHHHHhc----CCchHHHH
Q 008560 459 KESAAKALSTLMLYAGNRKILRKD------ERG------IVTVVQLLDPL-IQNLDKKYPVAILAALV----HCRKCRKQ 521 (561)
Q Consensus 459 ~~~A~~aL~~L~~~~~~~~~~~~~------~~~------i~~Lv~lL~~~-~~~~~k~~a~~~L~~La----~~~~~r~~ 521 (561)
.-.|+.+|.++..+.+..|+.+.. ..| +..+..+|-.. ......+-.++.|+-|+ +++..-+.
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 456888898888766665555421 122 44455555443 21223344666666554 89999888
Q ss_pred HHHcC-chHHHHHhhccCccchHHHHHhh
Q 008560 522 MVAAG-ACLHLRKLVEMDIEGANKLLESL 549 (561)
Q Consensus 522 i~~~g-~i~~L~~Ll~~~~~~akk~~~~l 549 (561)
.++.| .++.|..... ..++..-+++.|
T Consensus 194 FL~~~s~l~~Li~~~~-~~~~~~~~VqGL 221 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSN-QSSSEDVLVQGL 221 (312)
T ss_dssp HHCSTTHHHHHHHHHS---TCCCHHHHHH
T ss_pred HHcCcchHHHHHHHhh-cCCCCcchHHHH
Confidence 88886 7777777632 222334444443
No 303
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=30.17 E-value=2.2e+02 Score=28.93 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhCCchhhHHHHhhh--hHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCChHHHHHHH------HhCc
Q 008560 292 SQAFAAGVLRNLAGFSEIKENFIEEN--AVMVLLGLVASGTA---LAQENVFGCLCNLVSDDESLKLLIV------REGG 360 (561)
Q Consensus 292 ~~~~A~~aL~nLs~~~~~r~~i~~~g--~v~~Lv~lL~~~~~---~~~~~a~~~L~~L~~~~~~~r~~~~------~~g~ 360 (561)
.+-.|..++...........++.+.+ .+..|++++..++. .++..|+.+|..|+.........+. .+|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 34556666666666667777777655 99999999986543 7899999999999986543333222 2455
Q ss_pred HHHHHHh
Q 008560 361 IGSLKSY 367 (561)
Q Consensus 361 i~~Lv~l 367 (561)
+..+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6655543
No 304
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=30.16 E-value=2.6e+02 Score=26.14 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCC-----------------HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC
Q 008560 351 LKLLIVREGGIGSLKSYWDSVSA-----------------VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC 412 (561)
Q Consensus 351 ~r~~~~~~g~i~~Lv~lL~~~~~-----------------~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~ 412 (561)
.+..+.+.|++..++.++..+.+ .++...|...|..+|. ++++...+.++ ++.+...+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 34555677888888888865211 2567789999999996 77887777664 2222333322
Q ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 413 GVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 413 ~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
.....--.+..+|..+-. |.+....+.+.- +..++.++...+... .-...|..++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~--~~L~~L~~lc~~ 170 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQP--RYLDFLSSLCVC 170 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCCh--HHHHHHhhhccc
Confidence 222222235566666666 566677766554 888888887533222 234566666643
No 305
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=1.5e+02 Score=31.72 Aligned_cols=72 Identities=18% Similarity=0.106 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhh
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLA 388 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~ 388 (561)
.+|..|.+.+.+....++..|+..|.-+..+ +..+...|.+.+++..+|+..... .+..+++.++.+|..=.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 3666677777777778888888865555442 345778899999999999999886 77799999999987543
No 306
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.44 E-value=1.4e+02 Score=25.20 Aligned_cols=53 Identities=15% Similarity=-0.098 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCH
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAV 456 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 456 (561)
+++.|+.-|.+.+.++...|..+|...|.++++.+.++... |.|..+-..+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~l~~L~~~g~~ 61 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--PSLDHLGDIGSP 61 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--cHHHHHHHcCHH
No 307
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=29.34 E-value=92 Score=22.82 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHhcCCchHHHHHHHcCchHHHHHhhccC-ccchHHHHHhhc
Q 008560 509 LAALVHCRKCRKQMVAAGACLHLRKLVEMD-IEGANKLLESLG 550 (561)
Q Consensus 509 L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~-~~~akk~~~~l~ 550 (561)
|.-|+....+|+.+.+.|+.+.|..+=..+ +++...+.++|-
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV 44 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLV 44 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHH
Confidence 556778899999999999999888776543 566666655543
No 308
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.07 E-value=2.4e+02 Score=26.32 Aligned_cols=117 Identities=14% Similarity=0.140 Sum_probs=46.7
Q ss_pred hHHHHHhcCCHHHHHHHHhcCC------------------hHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhc
Q 008560 268 NARAIGSRGGISSLLEICQAGT------------------PGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVAS 328 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~~------------------~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~ 328 (561)
.+..+...|++..++++++..- ...-..+...|..++.++ +|+..+.+. ++-++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 3455666788888888886421 133478888999999876 777777653 3333444433
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcC
Q 008560 329 GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASC 390 (561)
Q Consensus 329 ~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~ 390 (561)
.....-..+..+|..+-.++......+.+.- |+.++.++.... -...-+..|..+|.+
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC---CChHHHHHHhhhccc
Confidence 3322234567788888888776666665444 888888887621 233466777777764
No 309
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=28.72 E-value=94 Score=33.18 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=70.4
Q ss_pred HhhhHhhhcccCCCCCC----------------ccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHH-
Q 008560 40 LNDLETQLKDFSDFPAA----------------ASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSV- 102 (561)
Q Consensus 40 ~~~l~~~l~~~~~~p~~----------------~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i- 102 (561)
.-.|-..+||++++|.+ -+|-+|.|.-+|. .++.|. ++| =|-.|
T Consensus 504 IF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~---------i~s~Ch-H~F---------CrlCi~ 564 (791)
T KOG1002|consen 504 IFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDY---------IESSCH-HKF---------CRLCIK 564 (791)
T ss_pred HHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhh---------Hhhhhh-HHH---------HHHHHH
Confidence 44678889999999955 3688999988885 577876 555 34444
Q ss_pred ---HHHhhhhhcchhHHHhccCCCCCcccccccccccccccCC--CchHHHHHhHHHHHHHhcCCCH--HHHHHHHHHHH
Q 008560 103 ---LAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGVVSSG--SKREAVRAESRNLITRLQIGSA--ESKNSAMDSLL 175 (561)
Q Consensus 103 ---~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li~~~~--~~~~~~~~~v~~Lv~~L~~~~~--~~~~~Al~~L~ 175 (561)
+...++.+-||| +-.-+|+ -++ ..| .......+.-..++.++...+. ..|.+|+..=.
T Consensus 565 eyv~~f~~~~nvtCP--~C~i~Ls--iDl-----------se~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl 629 (791)
T KOG1002|consen 565 EYVESFMENNNVTCP--VCHIGLS--IDL-----------SEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEEL 629 (791)
T ss_pred HHHHhhhcccCCCCc--ccccccc--ccc-----------cchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHH
Confidence 555677789999 3322222 110 111 1111223445567777765433 35778887766
Q ss_pred HhhccCchhhHHHH
Q 008560 176 GLLQEDDKNVVIAV 189 (561)
Q Consensus 176 ~l~~~~~~~~~~i~ 189 (561)
.++.+.+...+.|+
T Consensus 630 ~~l~~rd~t~KsIV 643 (791)
T KOG1002|consen 630 YFLRERDRTAKSIV 643 (791)
T ss_pred HHHHHcccchhhhh
Confidence 77776666555543
No 310
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=28.65 E-value=6.3e+02 Score=25.56 Aligned_cols=208 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh------hCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNL------AGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCN 343 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nL------s~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 343 (561)
..+...|.+..|+..+...+-+.++.+..+..|+ ...+..--.......+..|++--.. ..+.-..+...|.+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Q ss_pred hcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcch----HHHHHHHhcCCCHHHH
Q 008560 344 LVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGF----VVRLVNVLNCGVLSVR 418 (561)
Q Consensus 344 L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~----i~~Lv~lL~~~~~~~~ 418 (561)
...... ..+.+....-....-.+++.+.- ++..-|......+.. +.....++..... .+.--.++++++.-++
T Consensus 152 cirhe~-LakiiL~s~~~~~FF~~vq~p~F-diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 152 CIRHEF-LAKIILESTNFEKFFLYVQLPNF-DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHhhHH-HHHHHHcchhHHHHHHHHhccch-HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Q ss_pred HHHHHHHHHHcC----CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHh
Q 008560 419 IAAARAVSMLGI----NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILR 480 (561)
Q Consensus 419 ~~A~~aL~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~ 480 (561)
..+...|..+-. +....+.+.+......++.+|++++..+|-.|-...+....++..-+.+.
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~ 295 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVR 295 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHH
No 311
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=28.14 E-value=70 Score=26.73 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHH
Q 008560 209 KEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAK 252 (561)
Q Consensus 209 ~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~ 252 (561)
....+..+..|+..++.-..+++.| +++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~--~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELG--AVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcC--CHHHHHHHHCCCCccee
Confidence 4566778889999998888999999 99999999998876543
No 312
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.93 E-value=5.9e+02 Score=24.99 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCChHHHHHhccCC-CHHHHHHHHHHHHHhhccc
Q 008560 432 SKARKEMGECGCIGPLIKMLDGK-AVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 432 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~aL~~L~~~~ 473 (561)
+.....+-+.|+...|+.+..+. ...-.....+++..|....
T Consensus 168 d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 168 DQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 34445566778888888887743 2222334555555555433
No 313
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=27.92 E-value=3.5e+02 Score=28.36 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=69.2
Q ss_pred HHHHHHHHhhccCchhhHHHHhc----CChHHHHHhhcC---CCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHH
Q 008560 169 SAMDSLLGLLQEDDKNVVIAVAQ----GVVPVLVKLMDS---SSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLI 241 (561)
Q Consensus 169 ~Al~~L~~l~~~~~~~~~~i~~~----g~v~~Lv~lL~~---~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv 241 (561)
+|.--|.-++..++..+..+... ..|-++++.|-. .+..-..-|+-++..|+.++...+.+ .+-
T Consensus 372 qatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDdgFnk~i-He~-------- 442 (695)
T KOG2225|consen 372 QATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDATSNNSHHVYMALIVLLILSEDDGFNKII-HET-------- 442 (695)
T ss_pred hhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCCcCCccchHHHHHHHHHhcccchhhHHH-HHH--------
Confidence 34555667777788777776543 444455555532 22333445555666666555433322 222
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHH-------HHHhcCChHHHHHHHHHHHHhhCCchhhHHHH
Q 008560 242 RVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLL-------EICQAGTPGSQAFAAGVLRNLAGFSEIKENFI 314 (561)
Q Consensus 242 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv-------~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~ 314 (561)
.|.+++.-.+-.-.-..-||+-.|+ .+++..+.-....|+.+|.|.+..-.+-...+
T Consensus 443 ----------------mlKnitWyser~v~EISLGglliLvviRtIQyNmlktRDkYLHTNCLAALANMSa~Fr~Lhpyv 506 (695)
T KOG2225|consen 443 ----------------MLKNITWYSERSVREISLGGLLILVVIRTIQYNMLKTRDKYLHTNCLAALANMSAFFRNLHPYV 506 (695)
T ss_pred ----------------HHhhccceecceeeeeeccceeeeeeHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHH
Confidence 2333333221111111234433222 23444455566889999999987665555555
Q ss_pred hhhhHHHHHHHhhcCCHH
Q 008560 315 EENAVMVLLGLVASGTAL 332 (561)
Q Consensus 315 ~~g~v~~Lv~lL~~~~~~ 332 (561)
....+. |.++|......
T Consensus 507 aQRliS-Lf~lLtkkH~k 523 (695)
T KOG2225|consen 507 AQRLIS-LFDLLTKKHAK 523 (695)
T ss_pred HHHHHH-HHHHHHHHHHH
Confidence 444443 44555544443
No 314
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=27.73 E-value=5.5e+02 Score=24.59 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCC-------------H-HHHH----HHHHHHHHHcCCHHHH
Q 008560 374 VKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGV-------------L-SVRI----AAARAVSMLGINSKAR 435 (561)
Q Consensus 374 ~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~-------------~-~~~~----~A~~aL~~L~~~~~~~ 435 (561)
..-...++..+..|..++++...+.+.++++.+.+.|...+ + .+.. .=...++.++.+++..
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 45667788899999999999999988899999998775331 1 1222 1245788888889999
Q ss_pred HHHHhCCChHHHHHhccCC
Q 008560 436 KEMGECGCIGPLIKMLDGK 454 (561)
Q Consensus 436 ~~i~~~g~i~~Lv~ll~~~ 454 (561)
+.+-+.|....+..+....
T Consensus 158 ~lLe~~~if~~l~~i~~~~ 176 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLS 176 (226)
T ss_pred HHHHHCCHHHHHHHHHccC
Confidence 9999999999999999864
No 315
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.56 E-value=5.8e+02 Score=24.85 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=66.6
Q ss_pred HhhhhHHHHHHHhhcCCHH--------HHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHH
Q 008560 314 IEENAVMVLLGLVASGTAL--------AQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELL 384 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~--------~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL 384 (561)
.+..+.+.++++++.++.. +.+.-..+|..++ .|-++.|.+++.++ -+.-++-.|+++|
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL 137 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISAL 137 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4667899999999755531 2222233333333 34577777887664 3456889999999
Q ss_pred HHhhc-ChhhHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHhCCChHH
Q 008560 385 SQLAS-CLPIAEVLVSDGFVVRLVNV-LNCGVLSVRIAAARAVSMLGIN---SKARKEMGECGCIGP 446 (561)
Q Consensus 385 ~~L~~-~~~~~~~l~~~~~i~~Lv~l-L~~~~~~~~~~A~~aL~~L~~~---~~~~~~i~~~g~i~~ 446 (561)
..++. .+..|+.+++ .+..+... +...+..+...-+..+..|.-. ++.+ .+.+.|.|..
T Consensus 138 ~~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~-~~f~~~lVd~ 201 (249)
T PF06685_consen 138 AFLVHEGPISREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR-KAFEDGLVDP 201 (249)
T ss_pred HHHHHcCCCCHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH-HHHHcCCCCc
Confidence 99996 6666777765 34444443 4433333233333333333321 2333 3445676655
No 316
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=27.44 E-value=93 Score=33.24 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhc-chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSD-GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
+..+++.+--...+++++.+..++.+++-+-++|....-. ..-..+++++....+++-+.++.++..+..+
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 3344444444445699999999999999887777655543 4556677777777777777777777766543
No 317
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.34 E-value=9.4e+02 Score=27.15 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=128.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHH
Q 008560 202 DSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISS 280 (561)
Q Consensus 202 ~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 280 (561)
.+.|+..+.+|-.+|..++.++++ +..---+|+.| .+..+.-|+.+|..+......-...-.-..-..
T Consensus 16 ~s~D~~~R~~AE~~L~e~s~spec-----------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir~Y 84 (1082)
T KOG1410|consen 16 ESTDPTARHRAEKALAELSESPEC-----------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIRNY 84 (1082)
T ss_pred hcCCHHHHHHHHHHHHHHccCHHH-----------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 456788888888899888876654 33333344444 456677788888887654321100001112234
Q ss_pred HHHHHhcCChHHHH----HHHHHHHHhhC---CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHH
Q 008560 281 LLEICQAGTPGSQA----FAAGVLRNLAG---FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKL 353 (561)
Q Consensus 281 Lv~ll~~~~~~~~~----~A~~aL~nLs~---~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~ 353 (561)
+++.+..+.|.... .-+..+..+.. .+..+...+-...|..+.+.++.++.+-..-+..+|..|...-
T Consensus 85 ilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem----- 159 (1082)
T KOG1410|consen 85 ILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM----- 159 (1082)
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh-----
Confidence 66667766555432 23333333332 2344555555567777888887776554444555555443210
Q ss_pred HHHHhCcHHHHHH---hhhcCCC---HHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHh-cCCCH----HHHHHHH
Q 008560 354 LIVREGGIGSLKS---YWDSVSA---VKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVL-NCGVL----SVRIAAA 422 (561)
Q Consensus 354 ~~~~~g~i~~Lv~---lL~~~~~---~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~----~~~~~A~ 422 (561)
-+..+..+..+ ...+..| -++-..++..|..... -+-..=.+.|.+..++++- +.-+- ....+..
T Consensus 160 --N~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~--~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 160 --NQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVD--LNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred --hCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc--cCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 00001000000 0000000 0122223333332221 0000000122222222211 10000 0000001
Q ss_pred HHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc------cccchhhHhhcCCCHHHHHHhccC
Q 008560 423 RAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML------YAGNRKILRKDERGIVTVVQLLDP 495 (561)
Q Consensus 423 ~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~------~~~~~~~~~~~~~~i~~Lv~lL~~ 495 (561)
.=+++.--...-+..+.+...+.....+..+-++..-+.|..+|..+++ +...|..+.+. -+......|.+
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~--Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQH--LVEGVKRILEN 312 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHhC
Confidence 1111111123456667777778888888888788888889999998884 44556666543 34444455543
No 318
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=22 Score=35.81 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHH
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVL 116 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l 116 (561)
.-+.||||++|++-.. .+-.|. +-| =++.|-.-|..|+++|||=
T Consensus 42 ~~v~c~icl~llk~tm--------ttkeCl-hrf---------c~~ci~~a~r~gn~ecptc 85 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTM--------TTKECL-HRF---------CFDCIWKALRSGNNECPTC 85 (381)
T ss_pred hhhccHHHHHHHHhhc--------ccHHHH-HHH---------HHHHHHHHHHhcCCCCchH
Confidence 3488999999999643 223454 333 3678888899999999943
No 319
>PHA02929 N1R/p28-like protein; Provisional
Probab=26.97 E-value=36 Score=32.83 Aligned_cols=67 Identities=7% Similarity=0.130 Sum_probs=39.0
Q ss_pred hhhHhhhcccC---CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHH
Q 008560 41 NDLETQLKDFS---DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLI 117 (561)
Q Consensus 41 ~~l~~~l~~~~---~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~ 117 (561)
+.++.-+.+.. ..+.-.+||||++-+.+.. .-.+-....+.| ++.| -++-|..|+.. ..+|| +
T Consensus 156 ~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C-~H~F---------C~~CI~~Wl~~-~~tCP--l 221 (238)
T PHA02929 156 KTIPSVLSEYEKLYNRSKDKECAICMEKVYDKE-IKNMYFGILSNC-NHVF---------CIECIDIWKKE-KNTCP--V 221 (238)
T ss_pred HhcchhhhhhhhhhcCCCCCCCccCCcccccCc-cccccceecCCC-CCcc---------cHHHHHHHHhc-CCCCC--C
Confidence 34444444433 2234589999999776420 000000012345 5889 89999999974 78999 5
Q ss_pred hccC
Q 008560 118 KSGV 121 (561)
Q Consensus 118 t~~~ 121 (561)
=..+
T Consensus 222 CR~~ 225 (238)
T PHA02929 222 CRTP 225 (238)
T ss_pred CCCE
Confidence 4433
No 320
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=26.77 E-value=12 Score=25.59 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh
Q 008560 59 NTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH 109 (561)
Q Consensus 59 ~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~ 109 (561)
|||+++ +.+. ..-|+.+--|++| =++.+++++..+
T Consensus 1 CpIc~e-~~~~------~n~P~~L~CGH~~---------c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTE------ENPPMVLPCGHVF---------CKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TT------SS-EEE-SSS-EE---------EHHHHHHHHHH-
T ss_pred CCcccc-ccCC------CCCCEEEeCccHH---------HHHHHHHHHhcC
Confidence 788888 6540 0114555577999 788999998864
No 321
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=4.1e+02 Score=26.79 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=64.2
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 008560 361 IGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKE 437 (561)
Q Consensus 361 i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~ 437 (561)
+...++.|.+.+. ...-.++..|..|+. +++....+.. ..+-.+++-+++....+-..|+.++..+..+ ....+
T Consensus 90 l~~~l~~L~s~dW-~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDW-EDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHH-HHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344445554443 566677888888886 5554443332 4566777777777778888888888887752 33333
Q ss_pred HHhCCChHHHHHhccC---CCHHHHHHHHHHHHHhhccccc
Q 008560 438 MGECGCIGPLIKMLDG---KAVEEKESAAKALSTLMLYAGN 475 (561)
Q Consensus 438 i~~~g~i~~Lv~ll~~---~~~~v~~~A~~aL~~L~~~~~~ 475 (561)
..+ ..++.|+.. .+.-+++.|-.+|..+..+..-
T Consensus 167 ~ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 167 ELD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred HHH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 211 233344432 3344678888888887766543
No 322
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=26.54 E-value=7.4e+02 Score=25.70 Aligned_cols=128 Identities=14% Similarity=0.029 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH--hCcHHHHHHhh-h-cCCCHHHHHHHHHHHHHhhcChh----h---------H
Q 008560 332 LAQENVFGCLCNLVSDDESLKLLIVR--EGGIGSLKSYW-D-SVSAVKSLEVAVELLSQLASCLP----I---------A 394 (561)
Q Consensus 332 ~~~~~a~~~L~~L~~~~~~~r~~~~~--~g~i~~Lv~lL-~-~~~~~~~~e~a~~aL~~L~~~~~----~---------~ 394 (561)
..+..|...|..|+... .+.+.. .+.+..++.-. . +..+.+.++.|+.++..|+.... | .
T Consensus 226 TrR~AA~dfl~~L~~~~---~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKF---EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CcHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 56778888888887532 111111 11222222211 1 23445788999999999995221 1 1
Q ss_pred HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 008560 395 EVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKAL 466 (561)
Q Consensus 395 ~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL 466 (561)
..+....++|-|. -=.+..+-++-.|.+.+..+-.. -..+.+. +++|.++..|.+++.-|...|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222222333332 00133466788888888888652 1112222 3589999999999998998888764
No 323
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.24 E-value=8.3e+02 Score=27.11 Aligned_cols=135 Identities=7% Similarity=-0.078 Sum_probs=82.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--hchhh
Q 008560 159 LQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIA--EGLLL 236 (561)
Q Consensus 159 L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~--~g~~~ 236 (561)
...-++-.|..++..|......=|.+. ....++.+.-..|...+..++.....+|..|...+.....+.+ +. .
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf---~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eR--F 358 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYF---RKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVER--F 358 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHH---HhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH--H
Confidence 333345566667777766655444333 3334677777788888889999999999999987666554443 34 6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 237 LNHLIRVLESGSGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 237 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
-..++.++..+..-+|..+.+.+..+..-- ++. .+-....++-++.|..++.-...+.++|.
T Consensus 359 k~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~S-------eIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 359 KDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSS-------EILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHhcccchh-------HHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 677788887775558888888877664320 111 11122223335556555555555555554
No 324
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.58 E-value=2.6e+02 Score=30.20 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhcc
Q 008560 433 KARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 433 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~ 472 (561)
+..+.+.+.+.++.|+.+|. +.++.++..|++.|+.+...
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666677888999999887 45677888888888888643
No 325
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.16 E-value=75 Score=25.75 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=22.3
Q ss_pred chHHHHHhhccCcc--chHHHHHhhc-cCccc
Q 008560 527 ACLHLRKLVEMDIE--GANKLLESLG-RGKIW 555 (561)
Q Consensus 527 ~i~~L~~Ll~~~~~--~akk~~~~l~-~~~~~ 555 (561)
....|.++++..++ ||+++.++++ +++||
T Consensus 8 ~l~~L~~lLD~~~~~~gWr~LAe~lg~~~~fr 39 (97)
T cd08783 8 LLRRLSELLDRAADGKGWRKLAELAGSRGRFR 39 (97)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHccCCccc
Confidence 45678889987764 7999999998 56554
No 326
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.09 E-value=4.3e+02 Score=22.49 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=63.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcC--C-------cchHH-----HHHhchhhHHHHHHHHhcCC----HHHHH
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMV--D-------SSKHV-----LIAEGLLLLNHLIRVLESGS----GFAKE 253 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~--~-------~~~~~-----i~~~g~~~i~~Lv~lL~~~~----~~~~~ 253 (561)
..++.++.++.+ ++...+..+.+|..+..+ + ..|.. +.+.....+..+.+++.... .+...
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 567777777777 466666777777766532 1 11211 22211125666666676653 67788
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHH
Q 008560 254 RACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVL 300 (561)
Q Consensus 254 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL 300 (561)
.+..++...... -....+...+.++.+..++.+. ..+..|+.+|
T Consensus 105 ~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISW-IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 888888887663 2344556677888888888543 3466666654
No 327
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.03 E-value=52 Score=34.22 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccc
Q 008560 59 NTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIK 130 (561)
Q Consensus 59 ~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lip 130 (561)
|.||-++=+.|+ |+.-.|.-| +++-|++++. .+++|| +|.++|.. .+++|
T Consensus 3 CaISgEvP~~PV---------vS~~Sg~vf---------EkrLIEqyI~-e~G~DP--It~~pLs~-eelV~ 52 (506)
T KOG0289|consen 3 CAISGEVPEEPV---------VSPVSGHVF---------EKRLIEQYIA-ETGKDP--ITNEPLSI-EELVE 52 (506)
T ss_pred ecccCCCCCCcc---------ccccccchH---------HHHHHHHHHH-HcCCCC--CCCCcCCH-HHeee
Confidence 455555555442 555567778 9999999985 489999 99999973 45554
No 328
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.28 E-value=88 Score=18.65 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHh
Q 008560 208 MKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLE 245 (561)
Q Consensus 208 ~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~ 245 (561)
+|..|+.+|..+.. +. ++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~--ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PR--AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HH--HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HH--HHHHHHHHhc
Confidence 46777777876653 44 7888888775
No 329
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=24.08 E-value=5.5 Score=26.31 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchh
Q 008560 59 NTLCLDHVHSVSHTLIEAASV-AQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGD 114 (561)
Q Consensus 59 ~p~~~~~~~~~~~~l~~~~~~-v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp 114 (561)
|||+.+.+.+ + +...-|++| =.+=|++|++. ...||
T Consensus 1 C~iC~~~~~~----------~~~~~~CGH~f---------C~~C~~~~~~~-~~~CP 37 (39)
T PF13923_consen 1 CPICLDELRD----------PVVVTPCGHSF---------CKECIEKYLEK-NPKCP 37 (39)
T ss_dssp ETTTTSB-SS----------EEEECTTSEEE---------EHHHHHHHHHC-TSB-T
T ss_pred CCCCCCcccC----------cCEECCCCCch---------hHHHHHHHHHC-cCCCc
Confidence 5677777775 3 345567888 88899999988 78898
No 330
>cd08798 Death_NFkB2_p100 Death domain of the Nuclear Factor-KappaB2 precursor protein p100. Death Domain (DD) of the Nuclear Factor-KappaB2 (NF-kB2) precursor protein p100. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). NF-kB2 (or p52) is produced from the processing of the precursor protein p100, which contains ANK repeats and a C-terminal DD in addition to the RHD. It is regulated by the non-canonical NF-kB pathway. The p100 precursor is cytosolic and interacts with RelB. Upon phosphorylation by IKKalpha, p100 is processed to its 52kDa active, DNA binding form and the p52/RelB complex is translocated into the nucleus. The non-canonical pathway plays a role in adaptive immunity and lymphorganogenesis. In general, DDs are protein-protein interaction domains found i
Probab=24.03 E-value=57 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.0
Q ss_pred hHHHHHhhccCcc--chHHHHHhhccCccccccc
Q 008560 528 CLHLRKLVEMDIE--GANKLLESLGRGKIWGVFA 559 (561)
Q Consensus 528 i~~L~~Ll~~~~~--~akk~~~~l~~~~~~~~~~ 559 (561)
...|.++++.+++ +|+.+.+||.-+++-+.|-
T Consensus 2 ~qkLc~~Ld~p~~g~dW~~LA~kL~l~~l~~~f~ 35 (76)
T cd08798 2 LQRLEQLLNDTQTDVPWMELAERLGLQSLVDTYK 35 (76)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCcchHHHHHh
Confidence 4568889988766 7899999999888877773
No 331
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.83 E-value=7.1e+02 Score=25.48 Aligned_cols=110 Identities=16% Similarity=0.035 Sum_probs=63.4
Q ss_pred hHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhc----C------ChHHHHHHHH
Q 008560 236 LLNHLIRVLESG-------SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQA----G------TPGSQAFAAG 298 (561)
Q Consensus 236 ~i~~Lv~lL~~~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~----~------~~~~~~~A~~ 298 (561)
.+|-+++++..+ +........+.+..|..++...-..--+-.++.++..+-. . .-..+..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 455555555433 4555666777778887776544433344467777765522 1 1256788889
Q ss_pred HHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH--HHHHHHHHHHHHhc
Q 008560 299 VLRNLAGFSEIKENFIEENAVMVLLGLVASGTA--LAQENVFGCLCNLV 345 (561)
Q Consensus 299 aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~ 345 (561)
.|..++..-.....-....+...+.+.+.+... .....|+..|..+.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 988887543222222344455566666654432 34666666666653
No 332
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.55 E-value=7.5e+02 Score=24.39 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=27.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMV 222 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~ 222 (561)
=.+|+++.++++.++.++..++.+|..+...
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~ 149 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEK 149 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999998764
No 333
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=22.53 E-value=8.8e+02 Score=25.15 Aligned_cols=128 Identities=20% Similarity=0.101 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh------cCCHHHHHHHHHHHHHhcCCChHHH-----------
Q 008560 290 PGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA------SGTALAQENVFGCLCNLVSDDESLK----------- 352 (561)
Q Consensus 290 ~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~L~~~~~~~r----------- 352 (561)
...+.+|+..|+.|+... ..-+..-....+-.++. ..+...+..|+..+..|+......+
T Consensus 225 ~TrR~AA~dfl~~L~~~~---~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKF---EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 345678888888887432 22111111122222232 2334678888988888887553211
Q ss_pred -HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 008560 353 -LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAV 425 (561)
Q Consensus 353 -~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL 425 (561)
..++..-++|.|. -+....+-++..|++.+..+-.. -..+.+ .++++.++..|.+++..+...|+.++
T Consensus 302 v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~-l~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ-LPKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-S-HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh-CCHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2223333334333 11223345666666666666541 112222 25899999999999999999888764
No 334
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=21.86 E-value=1.5e+03 Score=27.68 Aligned_cols=230 Identities=12% Similarity=0.080 Sum_probs=116.6
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHH-HHhcCChHHHHHhh---cC-----C--CHHHHHHHHHHHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVI-AVAQGVVPVLVKLM---DS-----S--SLEMKEKTVASIA 217 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~-i~~~g~v~~Lv~lL---~~-----~--~~~~~e~a~~~L~ 217 (561)
...+++|+..+-+...+.|..+...++.+++.+-+.... ..+.- +-.++..+ .- . ...++|.++.+|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~-~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDL-LIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHH-HHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 457888999998899999999888888887754322111 11111 11111111 01 1 1357888888887
Q ss_pred HHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcCChHHHHH
Q 008560 218 RVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAGTPGSQAF 295 (561)
Q Consensus 218 ~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~ 295 (561)
.+..+...... .. .+..+.+++.....+++......+...... -+..+.. ..+++..++-+.+.+...+..
T Consensus 155 ~~l~~~~~s~~---~~--~~~il~q~~~q~~w~ir~Ggll~iky~~ai--r~d~l~~~~~~vl~~~i~~L~ds~ddv~~~ 227 (1549)
T KOG0392|consen 155 AYLKHMDESLI---KE--TLDILLQMLRQPNWEIRHGGLLGIKYNVAI--RQDLLFQLLNLVLDFVIEGLEDSDDDVRSV 227 (1549)
T ss_pred HHHHhhhhHhh---HH--HHHHHHHHHcCcchhheechHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Confidence 76644221110 12 455555665555444443333333222110 0000000 123455555666777778888
Q ss_pred HHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcCCH--HHHHHHHHHHHHhcCCChHH---HHHHHHhCcHHHHHHhh
Q 008560 296 AAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASGTA--LAQENVFGCLCNLVSDDESL---KLLIVREGGIGSLKSYW 368 (561)
Q Consensus 296 A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~~~~~---r~~~~~~g~i~~Lv~lL 368 (561)
|+..|.-....- .....| ...+..+...+...+. .....-...+..++..++.. .+.-...|.++.+..++
T Consensus 228 aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l 305 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFL 305 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHH
Confidence 887776655433 111111 2344444444432222 22233334445555544211 11112247777777777
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 008560 369 DSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 369 ~~~~~~~~~e~a~~aL~~L~~ 389 (561)
...-+ .++..++..+..|..
T Consensus 306 ~~~i~-sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 306 RHTIS-SVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHH-HHHHHHHHHHHHHHh
Confidence 76543 677888888888875
No 335
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=21.13 E-value=64 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHH
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASV 79 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~ 79 (561)
.||.+|+ .+++.+..++++.....
T Consensus 12 ~FF~rPl-p~li~~~a~sl~~l~~~ 35 (55)
T PF05338_consen 12 KFFSRPL-PELIDECAKSLSDLRLV 35 (55)
T ss_pred HHHcCcH-HHHHHHHHHHHhhhhhh
Confidence 5899999 99999998888775443
No 336
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=20.75 E-value=1e+03 Score=27.16 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=63.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH-HHHHHh
Q 008560 280 SLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK-LLIVRE 358 (561)
Q Consensus 280 ~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r-~~~~~~ 358 (561)
.+...+..+++......+.++.+++........= +..-.+.-..-.+..-..+......+|..++..++..- ..+.+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 3444444555666666677777776544221111 11111111112222223456667788888888776544 444456
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
++...++.++-++.+ ++.+.|..+|.....
T Consensus 524 ~~~~~i~s~lfsp~~-~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDD-DLYQAAQDLLKQAFD 553 (727)
T ss_pred chhhHHHhheeCCCh-HHHHHHHHHHHHHhc
Confidence 788899999888765 899999999998875
No 337
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.36 E-value=3.4e+02 Score=27.85 Aligned_cols=98 Identities=22% Similarity=0.119 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc----------CCCHHHHHHHHHHHHHhhccccch-hhHhhc
Q 008560 414 VLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD----------GKAVEEKESAAKALSTLMLYAGNR-KILRKD 482 (561)
Q Consensus 414 ~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~----------~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~ 482 (561)
+.........++..|..|+...-...=+-.+|.++..+- ..+..+|+.|+.+|..++..-.+. ..+ +.
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ 308 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QP 308 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HH
Confidence 344455566677777766432222111224666665552 133578999999999999432221 112 11
Q ss_pred CCCHHHHHH-hccCCccchhhHHHHHHHHHhc
Q 008560 483 ERGIVTVVQ-LLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 483 ~~~i~~Lv~-lL~~~~~~~~k~~a~~~L~~La 513 (561)
.-...+.+ ++++.......-.|+..|..|.
T Consensus 309 -ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 309 -RITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred -HHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 22334444 4455443333333666666653
Done!