Query 008560
Match_columns 561
No_of_seqs 425 out of 2499
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 4.6E-37 1.6E-41 330.5 34.0 375 150-529 48-491 (584)
2 3l6x_A Catenin delta-1; cateni 100.0 1.4E-36 4.7E-41 326.8 34.3 368 169-543 27-464 (584)
3 3now_A UNC-45 protein, SD10334 100.0 5.4E-36 1.8E-40 332.3 34.5 385 151-538 331-762 (810)
4 3ul1_B Importin subunit alpha- 100.0 4E-35 1.4E-39 316.9 39.4 387 150-541 57-464 (510)
5 1xm9_A Plakophilin 1; armadill 100.0 5.3E-36 1.8E-40 319.1 29.2 365 151-519 3-454 (457)
6 3now_A UNC-45 protein, SD10334 100.0 1.4E-35 5E-40 328.9 31.1 389 150-543 290-725 (810)
7 3tpo_A Importin subunit alpha- 100.0 5.6E-34 1.9E-38 309.4 40.5 387 150-541 76-483 (529)
8 3nmz_A APC variant protein; pr 100.0 8.9E-35 3E-39 306.1 32.1 359 149-515 31-451 (458)
9 1xm9_A Plakophilin 1; armadill 100.0 1.2E-34 4.2E-39 308.6 33.2 358 193-556 3-455 (457)
10 4b8j_A Importin subunit alpha- 100.0 1.4E-33 4.6E-38 306.4 41.8 398 148-550 72-495 (528)
11 1jdh_A Beta-catenin; beta-cate 100.0 2.4E-33 8.2E-38 303.8 38.3 388 150-543 101-518 (529)
12 3nmz_A APC variant protein; pr 100.0 8.2E-34 2.8E-38 298.8 29.1 323 151-475 71-454 (458)
13 1wa5_B Importin alpha subunit; 100.0 4.9E-32 1.7E-36 294.3 42.7 397 149-550 86-509 (530)
14 2z6h_A Catenin beta-1, beta-ca 100.0 2.9E-32 9.8E-37 303.1 39.8 387 151-543 99-515 (644)
15 1jdh_A Beta-catenin; beta-cate 100.0 2.8E-32 9.5E-37 295.4 34.1 386 149-542 16-413 (529)
16 3ul1_B Importin subunit alpha- 100.0 7.2E-32 2.5E-36 291.4 34.9 358 151-512 101-476 (510)
17 2z6g_A B-catenin; FULL-length, 100.0 9.1E-32 3.1E-36 304.4 37.1 397 150-552 234-664 (780)
18 3tpo_A Importin subunit alpha- 100.0 1.4E-31 4.7E-36 290.6 36.5 358 150-511 119-494 (529)
19 2z6h_A Catenin beta-1, beta-ca 100.0 7.1E-32 2.4E-36 299.9 32.3 383 150-540 14-408 (644)
20 2jdq_A Importin alpha-1 subuni 100.0 1E-30 3.5E-35 277.2 38.7 384 152-541 22-429 (450)
21 2z6g_A B-catenin; FULL-length, 100.0 3.5E-31 1.2E-35 299.6 35.8 383 150-542 115-546 (780)
22 4b8j_A Importin subunit alpha- 100.0 1.3E-30 4.5E-35 282.9 37.1 362 150-514 117-496 (528)
23 3nmw_A APC variant protein; AR 100.0 2.5E-31 8.5E-36 271.9 28.6 268 207-476 47-339 (354)
24 1wa5_B Importin alpha subunit; 100.0 1.4E-29 4.8E-34 275.0 37.7 360 150-513 130-509 (530)
25 2jdq_A Importin alpha-1 subuni 100.0 2E-29 6.8E-34 267.2 35.5 359 150-513 64-442 (450)
26 3nmw_A APC variant protein; AR 100.0 7.2E-30 2.5E-34 261.1 25.7 262 166-431 48-335 (354)
27 4hxt_A De novo protein OR329; 99.9 5.9E-25 2E-29 213.8 28.6 240 236-476 3-246 (252)
28 4hxt_A De novo protein OR329; 99.9 6.6E-25 2.2E-29 213.5 27.4 236 192-430 2-241 (252)
29 4db8_A Armadillo-repeat protei 99.9 3.6E-25 1.2E-29 216.1 22.8 236 151-389 13-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 1.3E-24 4.5E-29 212.0 23.8 237 191-430 11-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 5.3E-24 1.8E-28 232.0 29.0 382 151-541 297-762 (778)
32 3opb_A SWI5-dependent HO expre 99.9 5.9E-24 2E-28 231.7 29.0 383 152-543 257-716 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 2.1E-23 7.3E-28 199.2 18.7 195 192-389 8-229 (233)
34 4db6_A Armadillo repeat protei 99.9 2.5E-21 8.4E-26 183.4 24.9 197 274-471 10-209 (210)
35 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-22 6.5E-27 192.6 17.1 195 150-347 8-230 (233)
36 4db6_A Armadillo repeat protei 99.9 1.8E-21 6.1E-26 184.4 23.0 197 190-389 10-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 8.4E-20 2.9E-24 181.8 23.9 184 290-473 54-240 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 2.9E-19 1E-23 177.8 24.0 202 149-353 27-245 (296)
39 3grl_A General vesicular trans 99.7 6.1E-15 2.1E-19 157.0 33.1 331 144-480 15-404 (651)
40 3grl_A General vesicular trans 99.7 4.8E-13 1.6E-17 142.5 39.2 356 189-549 119-540 (651)
41 1oyz_A Hypothetical protein YI 99.5 1.2E-11 4E-16 122.1 27.7 257 189-509 20-277 (280)
42 1b3u_A Protein (protein phosph 99.4 1.7E-11 5.7E-16 133.6 25.4 368 151-543 165-536 (588)
43 1oyz_A Hypothetical protein YI 99.4 1.7E-11 5.9E-16 120.9 22.6 253 151-467 24-278 (280)
44 1b3u_A Protein (protein phosph 99.4 2.1E-11 7.2E-16 132.8 24.5 366 151-543 204-575 (588)
45 4fdd_A Transportin-1; heat rep 99.4 7.2E-12 2.5E-16 143.3 21.3 347 149-513 88-470 (852)
46 4fdd_A Transportin-1; heat rep 99.4 7.7E-12 2.6E-16 143.0 19.6 347 151-513 129-511 (852)
47 2vgl_B AP-2 complex subunit be 99.4 1.3E-10 4.5E-15 127.2 26.3 294 147-471 118-419 (591)
48 2vgl_B AP-2 complex subunit be 99.3 3.1E-10 1.1E-14 124.2 23.3 355 149-544 85-446 (591)
49 3ltm_A Alpha-REP4; protein eng 99.3 4.1E-10 1.4E-14 106.0 20.6 188 190-431 17-204 (211)
50 3ltm_A Alpha-REP4; protein eng 99.2 5.2E-10 1.8E-14 105.3 19.8 188 236-475 20-207 (211)
51 3ltj_A Alpharep-4; protein eng 99.2 8.3E-10 2.9E-14 103.0 19.9 185 191-429 13-197 (201)
52 1w63_A Adapter-related protein 99.2 7.5E-09 2.6E-13 113.8 29.6 329 148-517 32-382 (618)
53 3ltj_A Alpharep-4; protein eng 99.2 1.1E-09 3.9E-14 102.1 19.4 183 236-470 15-197 (201)
54 1w63_A Adapter-related protein 99.2 1.5E-08 5.2E-13 111.3 29.1 308 151-495 71-433 (618)
55 1ibr_B P95, importin beta-1 su 99.0 9.9E-09 3.4E-13 108.0 21.0 368 152-543 3-425 (462)
56 1ibr_B P95, importin beta-1 su 99.0 2.3E-08 8E-13 105.1 20.9 349 153-513 38-436 (462)
57 4gmo_A Putative uncharacterize 99.0 5.3E-09 1.8E-13 116.2 15.9 196 275-470 33-257 (684)
58 4gmo_A Putative uncharacterize 99.0 4.9E-09 1.7E-13 116.5 15.3 193 236-429 35-257 (684)
59 2bpt_A Importin beta-1 subunit 99.0 5.7E-07 2E-11 102.3 32.3 347 150-513 134-528 (861)
60 2bpt_A Importin beta-1 subunit 98.9 1.6E-07 5.4E-12 107.0 25.9 344 153-513 98-481 (861)
61 2vgl_A Adaptor protein complex 98.9 4.1E-06 1.4E-10 91.8 34.4 333 148-516 33-400 (621)
62 1qgr_A Protein (importin beta 98.9 2.3E-07 8E-12 105.8 25.0 344 154-513 94-478 (876)
63 1qgr_A Protein (importin beta 98.8 6E-07 2.1E-11 102.4 27.6 309 151-472 129-480 (876)
64 1u6g_C TIP120 protein, CAND1; 98.8 1E-07 3.6E-12 113.1 20.7 345 150-513 6-402 (1230)
65 2vgl_A Adaptor protein complex 98.8 3.4E-06 1.2E-10 92.4 30.9 294 151-472 75-399 (621)
66 3m62_A Ubiquitin conjugation f 98.8 3.3E-10 1.1E-14 125.3 -2.4 91 27-140 858-953 (968)
67 2kr4_A Ubiquitin conjugation f 98.8 2.4E-10 8.3E-15 90.9 -3.0 68 50-140 8-75 (85)
68 2f42_A STIP1 homology and U-bo 98.8 4.2E-10 1.4E-14 101.6 -2.1 88 31-140 78-168 (179)
69 1wgm_A Ubiquitin conjugation f 98.7 4.4E-10 1.5E-14 91.8 -3.3 67 51-140 17-84 (98)
70 2kre_A Ubiquitin conjugation f 98.7 3.6E-10 1.2E-14 92.7 -4.4 69 49-140 22-90 (100)
71 2bay_A PRE-mRNA splicing facto 98.6 1.9E-09 6.4E-14 79.6 -3.1 56 56-134 3-59 (61)
72 1u6g_C TIP120 protein, CAND1; 98.5 3.8E-06 1.3E-10 99.7 22.7 354 148-513 84-505 (1230)
73 1ho8_A Vacuolar ATP synthase s 98.5 0.00018 6.3E-09 74.2 29.6 319 151-473 78-478 (480)
74 2qk2_A LP04448P; mini spindles 98.4 8E-06 2.7E-10 78.2 15.8 183 154-346 19-205 (242)
75 2c2l_A CHIP, carboxy terminus 98.3 3.7E-08 1.2E-12 97.1 -2.7 68 51-140 203-270 (281)
76 1ho8_A Vacuolar ATP synthase s 98.2 0.00044 1.5E-08 71.4 26.1 318 189-511 74-473 (480)
77 2yu4_A E3 SUMO-protein ligase 98.2 4.3E-08 1.5E-12 79.4 -3.6 66 53-140 4-78 (94)
78 2db0_A 253AA long hypothetical 98.2 0.0006 2.1E-08 60.6 22.1 212 236-472 33-247 (253)
79 3b2a_A TON_1937, putative unch 98.2 0.00014 4.6E-09 67.4 18.3 186 151-348 34-220 (265)
80 1te4_A Conserved protein MTH18 98.1 7.4E-07 2.5E-11 76.9 2.0 122 190-344 10-131 (131)
81 2qk1_A Protein STU2; STU2P, XM 98.1 1.9E-05 6.5E-10 76.1 11.2 188 155-346 21-220 (249)
82 2iw3_A Elongation factor 3A; a 98.1 0.00045 1.5E-08 78.2 23.8 367 148-536 12-401 (986)
83 4ady_A RPN2, 26S proteasome re 98.0 0.0031 1.1E-07 70.7 29.9 290 164-513 372-675 (963)
84 3tjz_B Coatomer subunit gamma; 98.0 0.00024 8.1E-09 71.5 19.1 307 163-509 40-348 (355)
85 4ady_A RPN2, 26S proteasome re 98.0 0.0015 5.2E-08 73.2 27.2 259 161-472 406-677 (963)
86 2qk2_A LP04448P; mini spindles 98.0 5.3E-05 1.8E-09 72.4 13.2 180 239-430 19-205 (242)
87 3b2a_A TON_1937, putative unch 98.0 0.0002 6.8E-09 66.3 15.5 190 315-517 31-221 (265)
88 1t1h_A Gspef-atpub14, armadill 97.9 4.1E-07 1.4E-11 70.9 -3.2 67 52-140 4-70 (78)
89 1te4_A Conserved protein MTH18 97.9 2.4E-06 8.2E-11 73.6 1.2 118 151-302 13-130 (131)
90 3dad_A FH1/FH2 domain-containi 97.9 0.00038 1.3E-08 68.4 16.0 175 320-495 121-316 (339)
91 2db0_A 253AA long hypothetical 97.8 0.0087 3E-07 53.3 22.3 188 314-522 29-219 (253)
92 3dad_A FH1/FH2 domain-containi 97.8 0.0018 6.1E-08 63.7 20.1 180 280-460 122-325 (339)
93 3tjz_B Coatomer subunit gamma; 97.6 0.0027 9.2E-08 63.8 17.9 274 150-464 68-346 (355)
94 2qk1_A Protein STU2; STU2P, XM 97.5 0.0017 5.9E-08 62.2 14.7 188 240-430 21-220 (249)
95 2iw3_A Elongation factor 3A; a 97.2 0.041 1.4E-06 62.4 23.1 257 151-429 55-323 (986)
96 3htk_C E3 SUMO-protein ligase 97.1 1.5E-05 5E-10 75.5 -4.5 66 53-140 178-247 (267)
97 1wa5_C Importin alpha RE-expor 97.0 0.083 2.8E-06 60.7 23.9 308 151-472 124-526 (960)
98 4ffb_C Protein STU2; tubulin f 96.5 0.077 2.6E-06 51.3 16.6 185 155-346 14-212 (278)
99 3oc3_A Helicase MOT1, MOT1; re 96.2 0.015 5.1E-07 60.6 9.2 240 151-425 175-431 (800)
100 3fl2_A E3 ubiquitin-protein li 96.1 0.00011 3.9E-09 62.4 -5.9 90 27-140 19-115 (124)
101 2of3_A ZYG-9; multifunctional 95.9 0.22 7.4E-06 47.7 15.4 179 153-345 49-235 (266)
102 3ztg_A E3 ubiquitin-protein li 95.8 0.00049 1.7E-08 55.0 -2.9 68 52-140 9-78 (92)
103 2fv2_A RCD1 required for cell 95.8 0.73 2.5E-05 43.3 18.1 172 293-469 73-266 (268)
104 2fv2_A RCD1 required for cell 95.8 0.27 9.4E-06 46.2 15.1 147 253-399 74-234 (268)
105 1z6u_A NP95-like ring finger p 95.2 0.00053 1.8E-08 60.3 -5.2 66 54-140 76-141 (150)
106 3ebb_A Phospholipase A2-activa 95.1 0.43 1.5E-05 46.6 14.8 136 289-424 161-300 (304)
107 1wa5_C Importin alpha RE-expor 94.8 1.3 4.4E-05 50.7 20.3 218 203-428 416-668 (960)
108 3ebb_A Phospholipase A2-activa 94.4 0.83 2.8E-05 44.6 14.7 187 194-381 105-298 (304)
109 1upk_A MO25 protein; transfera 94.3 3.4 0.00012 40.5 18.7 205 271-479 73-291 (341)
110 1upk_A MO25 protein; transfera 94.3 4.1 0.00014 39.9 19.2 199 228-431 73-284 (341)
111 2x1g_F Cadmus; transport prote 94.2 3.1 0.0001 47.5 21.5 290 162-473 476-816 (971)
112 2x19_B Importin-13; nuclear tr 94.1 9.8 0.00034 43.1 26.3 295 161-474 460-805 (963)
113 2ckl_B Ubiquitin ligase protei 94.1 0.0023 7.8E-08 57.2 -3.9 65 55-140 53-118 (165)
114 2egp_A Tripartite motif-contai 93.8 0.004 1.4E-07 47.8 -2.5 66 52-139 8-79 (79)
115 2ecw_A Tripartite motif-contai 93.6 0.012 4.1E-07 45.7 -0.1 66 52-139 15-85 (85)
116 1lrv_A LRV, leucine-rich repea 93.5 0.031 1.1E-06 53.1 2.6 68 238-339 77-144 (244)
117 3u0r_A Apoptosis inhibitor 5; 93.4 4.3 0.00015 41.8 18.0 150 246-415 39-191 (507)
118 3ibv_A Exportin-T; karyopherin 93.2 3.3 0.00011 47.5 19.1 294 162-474 205-569 (980)
119 2ecv_A Tripartite motif-contai 93.1 0.013 4.5E-07 45.4 -0.6 66 52-139 15-85 (85)
120 1lrv_A LRV, leucine-rich repea 92.7 0.048 1.6E-06 51.8 2.5 45 194-257 100-144 (244)
121 4ffb_C Protein STU2; tubulin f 92.5 2.5 8.4E-05 40.4 14.7 183 240-430 14-212 (278)
122 2f31_A Diaphanous protein homo 92.2 7.2 0.00025 36.2 18.8 152 392-544 35-217 (233)
123 2y43_A E3 ubiquitin-protein li 92.1 0.0058 2E-07 49.3 -4.1 63 55-140 21-84 (99)
124 3eg5_B Protein diaphanous homo 92.1 3.5 0.00012 41.6 15.8 150 308-459 101-282 (383)
125 3oc3_A Helicase MOT1, MOT1; re 92.0 0.28 9.5E-06 51.3 7.3 241 193-467 175-432 (800)
126 2f31_A Diaphanous protein homo 91.4 6.3 0.00022 36.6 15.7 160 169-331 20-213 (233)
127 3eg5_B Protein diaphanous homo 91.3 13 0.00045 37.3 20.9 149 392-541 101-280 (383)
128 2x1g_F Cadmus; transport prote 91.2 3 0.0001 47.7 15.9 212 205-430 477-722 (971)
129 2of3_A ZYG-9; multifunctional 91.2 7.3 0.00025 37.0 15.9 135 328-474 98-239 (266)
130 3lrq_A E3 ubiquitin-protein li 90.9 0.013 4.3E-07 47.4 -3.3 60 55-136 21-81 (100)
131 3hct_A TNF receptor-associated 89.9 0.017 6E-07 48.2 -3.3 67 52-140 14-80 (118)
132 1jm7_B BARD1, BRCA1-associated 89.3 0.015 5E-07 48.6 -4.3 74 31-139 7-81 (117)
133 2ckl_A Polycomb group ring fin 89.0 0.018 6.1E-07 47.2 -3.9 64 55-140 14-81 (108)
134 2x19_B Importin-13; nuclear tr 88.9 15 0.00051 41.6 19.2 214 202-429 459-713 (963)
135 2yur_A Retinoblastoma-binding 87.6 0.034 1.2E-06 42.0 -2.8 59 52-131 11-71 (74)
136 1jm7_A BRCA1, breast cancer ty 87.3 0.094 3.2E-06 43.0 -0.5 76 31-138 6-83 (112)
137 3hcs_A TNF receptor-associated 86.7 0.041 1.4E-06 49.1 -3.3 67 52-140 14-80 (170)
138 2bnx_A Diaphanous protein homo 86.6 16 0.00056 36.7 15.6 151 308-460 39-221 (386)
139 3m1i_C Exportin-1; heat repeat 85.9 23 0.00079 40.6 18.5 143 329-474 465-621 (1049)
140 4hat_C Exportin-1; heat repeat 85.5 56 0.0019 37.4 23.1 138 205-347 466-619 (1023)
141 4hat_C Exportin-1; heat repeat 85.5 4.7 0.00016 46.3 12.2 143 329-474 465-621 (1023)
142 2bnx_A Diaphanous protein homo 85.3 33 0.0011 34.4 19.4 150 392-542 39-219 (386)
143 3m1i_C Exportin-1; heat repeat 83.2 70 0.0024 36.6 32.7 298 162-473 207-571 (1049)
144 3qml_C Protein SLS1, nucleotid 82.8 17 0.00057 35.1 12.6 146 319-471 24-189 (315)
145 1lsh_A Lipovitellin (LV-1N, LV 82.2 67 0.0023 36.9 20.1 168 236-431 392-577 (1056)
146 3u0r_A Apoptosis inhibitor 5; 81.4 39 0.0013 34.8 15.5 122 161-302 39-160 (507)
147 3knv_A TNF receptor-associated 81.1 0.064 2.2E-06 46.2 -4.3 47 54-121 29-75 (141)
148 1rmd_A RAG1; V(D)J recombinati 80.9 0.075 2.6E-06 44.0 -3.9 48 55-123 22-69 (116)
149 2ecy_A TNF receptor-associated 80.5 0.21 7.1E-06 36.5 -1.1 51 52-123 11-61 (66)
150 3c2g_A SYS-1 protein; beta-cat 79.8 49 0.0017 32.6 15.0 241 254-495 262-558 (619)
151 3l9t_A Putative uncharacterize 79.8 21 0.00073 33.0 11.9 136 317-475 71-211 (240)
152 3l9t_A Putative uncharacterize 79.1 26 0.00087 32.5 12.2 136 195-351 74-212 (240)
153 3l11_A E3 ubiquitin-protein li 78.5 0.028 9.5E-07 46.6 -7.3 48 55-123 14-61 (115)
154 3ng2_A RNF4, snurf, ring finge 77.1 0.77 2.6E-05 33.7 1.1 61 55-131 9-69 (71)
155 2djb_A Polycomb group ring fin 75.9 0.25 8.5E-06 36.8 -2.0 50 52-123 11-61 (72)
156 4ayc_A E3 ubiquitin-protein li 75.8 0.11 3.6E-06 44.6 -4.6 46 56-123 53-98 (138)
157 3a6p_A Exportin-5; exportin-5, 75.4 1.3E+02 0.0044 35.1 26.2 299 149-472 10-381 (1204)
158 2ct2_A Tripartite motif protei 74.3 0.47 1.6E-05 36.7 -0.8 69 52-137 11-83 (88)
159 3gjx_A Exportin-1; transport, 73.9 89 0.003 35.9 17.6 217 193-430 29-275 (1073)
160 3c2g_A SYS-1 protein; beta-cat 73.6 24 0.00082 34.7 10.7 136 419-556 261-404 (619)
161 2xeu_A Ring finger protein 4; 73.6 0.78 2.7E-05 32.8 0.3 60 56-131 3-62 (64)
162 1x5b_A Signal transducing adap 71.9 8 0.00027 33.8 6.6 73 317-389 52-125 (163)
163 3qml_C Protein SLS1, nucleotid 71.7 56 0.0019 31.5 12.7 147 151-303 23-187 (315)
164 3ldz_A STAM-1, signal transduc 70.8 9.7 0.00033 32.3 6.7 72 149-220 41-113 (140)
165 1mhq_A ADP-ribosylation factor 69.3 15 0.00051 31.5 7.6 73 148-220 36-115 (148)
166 2ysj_A Tripartite motif-contai 69.2 0.36 1.2E-05 34.7 -2.4 43 53-114 17-61 (63)
167 2csy_A Zinc finger protein 183 68.3 0.23 8E-06 37.9 -3.8 56 55-134 14-69 (81)
168 1x5b_A Signal transducing adap 66.9 15 0.00052 32.0 7.3 72 149-220 51-124 (163)
169 1g25_A CDK-activating kinase a 65.9 1.3 4.5E-05 31.9 0.1 54 56-131 3-61 (65)
170 3ldz_A STAM-1, signal transduc 64.6 9 0.00031 32.5 5.2 70 402-471 43-114 (140)
171 3a6p_A Exportin-5; exportin-5, 63.8 2.2E+02 0.0075 33.1 19.2 215 205-431 109-381 (1204)
172 2ea6_A Ring finger protein 4; 63.3 2.5 8.6E-05 30.5 1.3 56 52-122 11-66 (69)
173 3ibv_A Exportin-T; karyopherin 63.2 2E+02 0.0069 32.5 27.6 286 163-470 21-360 (980)
174 3g2s_A C-terminal fragment of 62.7 20 0.00068 30.7 7.1 73 149-221 47-126 (149)
175 3gs3_A Symplekin, LD45768P; he 61.6 1.1E+02 0.0036 28.7 15.8 107 146-262 11-117 (257)
176 1juq_A ADP-ribosylation factor 60.7 18 0.00061 31.8 6.5 73 149-221 49-128 (171)
177 2ecj_A Tripartite motif-contai 60.6 0.79 2.7E-05 32.1 -1.9 43 53-114 12-56 (58)
178 1juq_A ADP-ribosylation factor 58.2 16 0.00053 32.2 5.7 72 318-389 51-128 (171)
179 1mhq_A ADP-ribosylation factor 58.0 26 0.00088 29.9 6.9 71 401-471 38-116 (148)
180 3g2s_A C-terminal fragment of 57.6 31 0.001 29.5 7.3 72 318-389 49-126 (149)
181 4ap4_A E3 ubiquitin ligase RNF 56.0 3 0.0001 34.6 0.6 55 54-123 5-59 (133)
182 3zyq_A Hepatocyte growth facto 55.0 21 0.00072 32.9 6.4 73 317-389 45-118 (226)
183 2ysl_A Tripartite motif-contai 52.8 0.94 3.2E-05 33.5 -2.8 51 52-123 16-68 (73)
184 3gjx_A Exportin-1; transport, 51.4 1.2E+02 0.0042 34.8 13.1 95 372-473 491-597 (1073)
185 1dvp_A HRS, hepatocyte growth 51.2 19 0.00065 33.0 5.4 72 318-389 43-115 (220)
186 3zyq_A Hepatocyte growth facto 49.9 25 0.00086 32.4 6.0 70 402-471 46-118 (226)
187 1dvp_A HRS, hepatocyte growth 38.2 43 0.0015 30.5 5.6 70 402-471 43-115 (220)
188 1vdy_A Hypothetical protein (R 37.4 94 0.0032 26.1 7.0 71 402-472 50-131 (140)
189 1elk_A Target of MYB1; superhe 36.7 64 0.0022 27.7 6.1 72 318-389 54-130 (157)
190 1elk_A Target of MYB1; superhe 36.3 90 0.0031 26.7 7.0 72 149-220 52-129 (157)
191 3gae_A Protein DOA1; UFD3, CDC 35.2 42 0.0014 31.4 5.1 102 245-349 100-220 (253)
192 3pst_A Protein DOA1; protein d 34.8 1.8E+02 0.0061 29.4 9.8 132 211-352 245-395 (425)
193 1lsh_A Lipovitellin (LV-1N, LV 34.1 5.7E+02 0.02 29.1 25.4 200 236-471 357-576 (1056)
194 2d8t_A Dactylidin, ring finger 33.8 1.1 3.6E-05 33.1 -5.2 47 55-123 14-60 (71)
195 1v87_A Deltex protein 2; ring- 32.3 7.9 0.00027 31.2 -0.5 58 54-123 23-93 (114)
196 3o2t_A Symplekin; heat repeat, 31.1 4E+02 0.014 26.4 12.8 66 275-344 62-127 (386)
197 3gae_A Protein DOA1; UFD3, CDC 30.6 47 0.0016 31.1 4.6 102 373-477 103-223 (253)
198 4ap4_A E3 ubiquitin ligase RNF 26.7 16 0.00054 30.0 0.4 63 54-132 70-132 (133)
199 3l3f_X Protein DOA1, DOA1/UFD3 25.5 1.2E+02 0.004 30.0 6.5 129 211-350 182-330 (362)
200 3ro3_B Minsc, peptide of prote 25.5 33 0.0011 18.5 1.3 11 98-108 6-16 (22)
201 2ect_A Ring finger protein 126 22.5 6.9 0.00023 29.1 -2.5 49 55-123 14-63 (78)
202 3o2t_A Symplekin; heat repeat, 21.3 6E+02 0.021 25.1 17.9 104 149-262 24-127 (386)
203 1yfs_A Alanyl-tRNA synthetase; 21.0 2.7E+02 0.0092 28.3 8.1 78 40-138 223-300 (465)
204 2ecn_A Ring finger protein 141 20.1 6 0.0002 28.7 -3.2 52 49-123 8-59 (70)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.6e-37 Score=330.46 Aligned_cols=375 Identities=19% Similarity=0.157 Sum_probs=317.7
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC--CcchH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV--DSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~--~~~~~ 227 (561)
..++.++..|++++++.|..|+..|.+++.++++++..|++.|+||+|+.+|+++++++|+.|+.+|.+|+.. ++++.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999984 78999
Q ss_pred HHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh------------------cC
Q 008560 228 VLIAEGLLLLNHLIRVLES-GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ------------------AG 288 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~------------------~~ 288 (561)
.|++.| ++++|+++|.+ ++.++++.++.+|++|+.+++++..|++ ++++.|++++. ..
T Consensus 128 ~I~~~G--aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 128 AIKNCD--GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHTT--HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHcC--CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 999999 99999999998 5889999999999999999999999985 57999999872 12
Q ss_pred ChHHHHHHHHHHHHhhCCc-hhhHHHHhh-hhHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCChH-------HH-
Q 008560 289 TPGSQAFAAGVLRNLAGFS-EIKENFIEE-NAVMVLLGLVAS------GTALAQENVFGCLCNLVSDDES-------LK- 352 (561)
Q Consensus 289 ~~~~~~~A~~aL~nLs~~~-~~r~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~~-------~r- 352 (561)
++.+++.|+++|+||+... ++|..+++. |+++.|+.++.+ .+...+++|+.+|.||+...+. +.
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 4688899999999999987 569999874 677899999975 3457899999999999975210 00
Q ss_pred -----------------HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh-----hhHHHHHhcchHHHHHHHh
Q 008560 353 -----------------LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCL-----PIAEVLVSDGFVVRLVNVL 410 (561)
Q Consensus 353 -----------------~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~-----~~~~~l~~~~~i~~Lv~lL 410 (561)
..+.+.++++.|+.++..+..+.+++.|+++|.|||.+. ..+..+.+.++++.|+++|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 111223456788999987667899999999999998642 2233444568999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCC--------CHHHHHHHHHHHHHhhc-cccchhhHhh
Q 008560 411 NCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGK--------AVEEKESAAKALSTLML-YAGNRKILRK 481 (561)
Q Consensus 411 ~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~--------~~~v~~~A~~aL~~L~~-~~~~~~~~~~ 481 (561)
.+++..+++.|+++|.+|+.++.++..| ..|+++.|+.+|... +.+++..|+.+|.||+. +..+++.+ .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I-~ 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL-R 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH-H
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH-H
Confidence 9999999999999999999987777766 679999999999865 46788999999999975 56666666 5
Q ss_pred cCCCHHHHHHhccCC-ccchhhHHHHHHHHHhcCCchHHHHHHHcCchH
Q 008560 482 DERGIVTVVQLLDPL-IQNLDKKYPVAILAALVHCRKCRKQMVAAGACL 529 (561)
Q Consensus 482 ~~~~i~~Lv~lL~~~-~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~ 529 (561)
+.++|+.|+++|..+ .....++.|..+|.+|..+++.|+.+-++|.-+
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~ 491 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKK 491 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCG
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCH
Confidence 679999999999774 344567889999999999999999999987654
No 2
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-36 Score=326.79 Aligned_cols=368 Identities=18% Similarity=0.181 Sum_probs=299.6
Q ss_pred HHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcchHHHHHhchhhHHHHHHHHhcC
Q 008560 169 SAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSKHVLIAEGLLLLNHLIRVLESG 247 (561)
Q Consensus 169 ~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~~~i~~~g~~~i~~Lv~lL~~~ 247 (561)
.++..|..+.++++.- .-...+.|+.||.+|.++++++|..|+.+|.+|+. +++++..+++.| +|++|+++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~--~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G--~Ip~LV~LL~s~ 102 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPP--PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK--GIPVLVGLLDHP 102 (584)
T ss_dssp -------------CCC--CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHGGGCS
T ss_pred chHHHHHHHHhcCCCC--CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcC--CcHHHHHHHCCC
Confidence 3444555554432211 11357899999999999999999999999999996 678899999999 999999999999
Q ss_pred CHHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHH
Q 008560 248 SGFAKERACVALQALSFS--KENARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLG 324 (561)
Q Consensus 248 ~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~ 324 (561)
+.++++.|+++|.+|+.. ++++..|.+.|+|+.|+.+|++ .+...++.|+++||||+.+++++..+++ ++++.|++
T Consensus 103 ~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHH
Confidence 999999999999999984 6899999999999999999998 4778899999999999999999999995 67999999
Q ss_pred Hhh------------------cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhC-cHHHHHHhhhcC-----CCHHHHHHH
Q 008560 325 LVA------------------SGTALAQENVFGCLCNLVSDDESLKLLIVREG-GIGSLKSYWDSV-----SAVKSLEVA 380 (561)
Q Consensus 325 lL~------------------~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g-~i~~Lv~lL~~~-----~~~~~~e~a 380 (561)
++. ..+..++++|+++|.||+..+++.|..+.+.+ +++.|+.+++.. .+...++.|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 872 12468999999999999999988899999865 568999999752 445899999
Q ss_pred HHHHHHhhcCh--------------------------hhHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC--
Q 008560 381 VELLSQLASCL--------------------------PIAEVLVSDGFVVRLVNVLN-CGVLSVRIAAARAVSMLGIN-- 431 (561)
Q Consensus 381 ~~aL~~L~~~~--------------------------~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~-- 431 (561)
+.+|+||+... .+.+.+++.++++.|+.+|+ +.+..++++|+++|++||.+
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999999642 12223334466888999996 45799999999999999863
Q ss_pred ---HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCcc-------chh
Q 008560 432 ---SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQ-------NLD 501 (561)
Q Consensus 432 ---~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-------~~~ 501 (561)
...+..+.++|+++.|+.||.++++.+++.|+++|.||+.+..++..+ +.++++.||++|..... ...
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v 419 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDT 419 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHH
Confidence 245566777899999999999999999999999999999998888777 34799999999976521 122
Q ss_pred hHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccC--ccchH
Q 008560 502 KKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMD--IEGAN 543 (561)
Q Consensus 502 k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~--~~~ak 543 (561)
...++++|.|++ .++..++.|.++|+++.|+.|+.+. .+.++
T Consensus 420 ~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 420 VISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 344788899886 8899999999999999999999875 44444
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-36 Score=332.30 Aligned_cols=385 Identities=14% Similarity=0.125 Sum_probs=329.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCC----hHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDD-KNVVIAVAQGV----VPVLVKLMDSS--SLEMKEKTVASIARVSMVD 223 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~----v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~ 223 (561)
.++.|+..+++++...|..|+..|.++..... +......+.|. ++.++++|.++ ++++++.|+++|.+|+.++
T Consensus 331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~ 410 (810)
T 3now_A 331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410 (810)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc
Confidence 46778888888888889999999999875322 22223334455 55677788887 7899999999999999999
Q ss_pred cchHHHHH-hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc------------------------------hH---
Q 008560 224 SSKHVLIA-EGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE------------------------------NA--- 269 (561)
Q Consensus 224 ~~~~~i~~-~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~------------------------------~~--- 269 (561)
+.+..++. .| +++.|+.+|++++..++..|+++|.||+...+ ++
T Consensus 411 ~vk~~lv~d~g--~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 411 ECKEKLIEDKA--SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp HHHHHHHHCHH--HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHccc--hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 99988885 79 99999999999999999999999999998532 12
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-C
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD-D 348 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~ 348 (561)
..+.+.|+++.|+.+++++++..++.|+++|.|++.++++|..++++|++++|+.+|.+++...++.|+++|.+|+.+ +
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 577889999999999999999999999999999999889999999999999999999999999999999999999874 3
Q ss_pred hHHHH-HHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcC-hhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 008560 349 ESLKL-LIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASC-LPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVS 426 (561)
Q Consensus 349 ~~~r~-~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 426 (561)
+..-. .....|++++|+.+|.++.+...+..|+.+|.||+.. ++.+..+++.|+++.|+.+|.+++..+++.|+++|+
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~ 648 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32110 0012469999999998765555667899999999984 678899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHh-CCChHHHHHhccCCCHHHHHHHHHHHHHhhc-cccchhhHhhcCCCHHHHHHhccCCccchhhHH
Q 008560 427 MLGINSKARKEMGE-CGCIGPLIKMLDGKAVEEKESAAKALSTLML-YAGNRKILRKDERGIVTVVQLLDPLIQNLDKKY 504 (561)
Q Consensus 427 ~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~ 504 (561)
||+.+++.+..+.+ .|+++.|+.++.+.+..+|+.|+++|.+|+. +..+.+.++...++++.|+++|.+.+. ..++.
T Consensus 649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~-~vq~~ 727 (810)
T 3now_A 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP-AVQHR 727 (810)
T ss_dssp HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH-HHHHH
T ss_pred HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH-HHHHH
Confidence 99999888888886 7999999999999999999999999999998 566777776657999999999987543 45778
Q ss_pred HHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccC
Q 008560 505 PVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMD 538 (561)
Q Consensus 505 a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~ 538 (561)
|+++|.|++ .+++.++.|+++|++++|.+|+...
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 999999997 6788999999999999999999655
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4e-35 Score=316.90 Aligned_cols=387 Identities=13% Similarity=0.136 Sum_probs=334.3
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC-Ccch
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQE-DDKNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMV-DSSK 226 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~-~~~~ 226 (561)
..++++++.+++++.+.+..|+..++.+++. ...-...+++.|+||.|+.+|+.. ++.+|..|+++|.+|+.. ++.+
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3589999999999999999999999987753 333467788999999999999755 589999999999999864 5678
Q ss_pred HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHH
Q 008560 227 HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGT-----PGSQAFAAGVL 300 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~A~~aL 300 (561)
..+++.| +++.|+.+|++++.++++.|+++|.+|+.+. +++..+.+.|++++|+.++.+.+ ......++++|
T Consensus 137 ~~vv~~G--aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGG--AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 8999999 9999999999999999999999999999874 67888899999999999998654 34578899999
Q ss_pred HHhhCCchhhHH-HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHH
Q 008560 301 RNLAGFSEIKEN-FIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEV 379 (561)
Q Consensus 301 ~nLs~~~~~r~~-i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~ 379 (561)
.|++.+...... ....|+++.|++++.+++.+++..|+++|.+|+.+++.....+.+.|+++.|+.++.+.+ ..++..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhhH
Confidence 999988754444 345789999999999999999999999999999998888888899999999999999865 489999
Q ss_pred HHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHH
Q 008560 380 AVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVE 457 (561)
Q Consensus 380 a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 457 (561)
++.+|++++. ++.....+.+.|+++.|+.+|.+.+..+++.|+++|.+++. +++.++.+.+.|+++.|+.++.+++..
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 373 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHH
Confidence 9999999986 67778888899999999999999999999999999999997 678899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc--ccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-------CCchHHHHHHHcCch
Q 008560 458 EKESAAKALSTLMLY--AGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-------HCRKCRKQMVAAGAC 528 (561)
Q Consensus 458 v~~~A~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-------~~~~~r~~i~~~g~i 528 (561)
+|..|+++|.|++.. ..+...+ .+.++++.|+++|...+. .....++.+|.++. ..+..+..+.+.|++
T Consensus 374 v~~~Aa~aL~Nl~~~~~~~~~~~L-~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 374 TQKEAAWAITNYTSGGTVEQIVYL-VHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHH-HHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHH-HHCCCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence 999999999999964 3444555 456999999999987543 33456888887764 234456778899999
Q ss_pred HHHHHhhccCccc
Q 008560 529 LHLRKLVEMDIEG 541 (561)
Q Consensus 529 ~~L~~Ll~~~~~~ 541 (561)
..|..|..++...
T Consensus 452 ~~ie~Lq~~~n~~ 464 (510)
T 3ul1_B 452 DKIEALQRHENES 464 (510)
T ss_dssp HHHHHGGGCSSHH
T ss_pred HHHHHHHcCCCHH
Confidence 9999998887665
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.3e-36 Score=319.12 Aligned_cols=365 Identities=13% Similarity=0.112 Sum_probs=307.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~i 229 (561)
.++.++..|++++++.|..|+..|.+++.+++.++..+++.|+||.|+.+|+++++.+++.|+.+|.+|+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 478899999999999999999999999988888888999999999999999999999999999999999987 7899999
Q ss_pred HHhchhhHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh--------cC--------ChHH
Q 008560 230 IAEGLLLLNHLIRVLE-SGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ--------AG--------TPGS 292 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~--------~~--------~~~~ 292 (561)
++.| ++++|+++|+ +++.++++.|+++|.+|+.+++++..+.+ |+++.|+.++. +. ++..
T Consensus 83 ~~~G--~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQN--GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTT--CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcC--CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 9999 9999999999 88999999999999999999889999999 99999999993 22 3445
Q ss_pred HHHHHHHHHHhhCCchhhHHHHhh-hhHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCCh----------------
Q 008560 293 QAFAAGVLRNLAGFSEIKENFIEE-NAVMVLLGLVAS------GTALAQENVFGCLCNLVSDDE---------------- 349 (561)
Q Consensus 293 ~~~A~~aL~nLs~~~~~r~~i~~~-g~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~~---------------- 349 (561)
.+.|+++|+||+.+++++..+++. |+++.|+.++.+ .+..++++++.+|.|++..-+
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 569999999999998999999997 999999999985 345688999999999973210
Q ss_pred ----------------------------------HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh-h--
Q 008560 350 ----------------------------------SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCL-P-- 392 (561)
Q Consensus 350 ----------------------------------~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~-~-- 392 (561)
...+.+.+.|+++.|+.+|..+.++.+++.|+++|.|||... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 011223456678999999998877899999999999999632 2
Q ss_pred --h-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCC------HHHHHHHH
Q 008560 393 --I-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKA------VEEKESAA 463 (561)
Q Consensus 393 --~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~------~~v~~~A~ 463 (561)
. +..+.+.|+++.|+++|.+++.+++..|+++|.+++.+++.+..+. .|+++.|+.+|...+ +++...++
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 2 2233457999999999999999999999999999999888877665 489999999999653 36788999
Q ss_pred HHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHH
Q 008560 464 KALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCR 519 (561)
Q Consensus 464 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r 519 (561)
.+|.++....+.....+.+.+|++.|++++.+......++.|..+|.++..+++.|
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 99999986555545555677999999999987623345677999999998666544
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-35 Score=328.87 Aligned_cols=389 Identities=15% Similarity=0.153 Sum_probs=330.8
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--cchH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD--SSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~--~~~~ 227 (561)
..++.++..+.+.+...+..|+..+...+ .++.+|..+.+.|+ +.|+.+++++++.+++.|+.+|++++.+. +...
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa-~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~ 367 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAAS-SKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHT-TSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccc
Confidence 46888999999999999999999888855 45789999888874 99999999999999999999999998542 2332
Q ss_pred HHHHhch--hhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCchHHHHHh-cCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 228 VLIAEGL--LLLNHLIRVLESG--SGFAKERACVALQALSFSKENARAIGS-RGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 228 ~i~~~g~--~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
..++.|. +.++.++++|.++ +.+++..|+++|.+|+..++.++.++. .|+++.|+++++++++..+..|+++|.|
T Consensus 368 ~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~N 447 (810)
T 3now_A 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVN 447 (810)
T ss_dssp CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3334440 1466788888887 889999999999999999999998886 7999999999999999999999999999
Q ss_pred hhCCch------------------------------hh---HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 303 LAGFSE------------------------------IK---ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 303 Ls~~~~------------------------------~r---~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
|+...+ ++ +.+++.|+++.|+.++.++++.+++.|+++|.||+. ++
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~ 526 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LK 526 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SH
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CH
Confidence 998542 23 677899999999999999999999999999999996 55
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHH---HhcchHHHHHHHhcCC-CHHHHHHHHHHH
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVL---VSDGFVVRLVNVLNCG-VLSVRIAAARAV 425 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l---~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL 425 (561)
.+|..+++.|++++|+.++.++++ ..++.|+++|.+|+.+......+ ...+++++|+++|.++ +...+..|+.+|
T Consensus 527 ~~r~~Vv~~Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 527 ELRGKVVQEGGVKALLRMALEGTE-KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 699999999999999999998764 88999999999999632211111 1136899999999865 445567899999
Q ss_pred HHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHH
Q 008560 426 SMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKY 504 (561)
Q Consensus 426 ~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~ 504 (561)
.||+.. +++++.++++|+++.|+.++.++++.+|+.|+++|+||+.+++.+..++...+.++.|+.+|++... ..++.
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~-~vq~~ 684 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE-ETATA 684 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSH-HHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCH-HHHHH
Confidence 999984 7899999999999999999999999999999999999999988988887435789999999988543 45778
Q ss_pred HHHHHHHhcC-CchHHHHHHH-cCchHHHHHhhccCccchH
Q 008560 505 PVAILAALVH-CRKCRKQMVA-AGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 505 a~~~L~~La~-~~~~r~~i~~-~g~i~~L~~Ll~~~~~~ak 543 (561)
|+++|.+++. ++...+.+++ .|++++|++|+.+++++.+
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 9999999995 8888899999 9999999999999888765
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.6e-34 Score=309.43 Aligned_cols=387 Identities=13% Similarity=0.139 Sum_probs=335.3
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-cch
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQ-EDDKNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVD-SSK 226 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~-~~~ 226 (561)
..+++++..+++++++.+..|+..++.++. +.......+++.|+||.|+.+|... ++.++..|+++|.+++... +.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 468899999999999999999999998765 3444567788999999999999754 5999999999999999764 567
Q ss_pred HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHH
Q 008560 227 HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGT-----PGSQAFAAGVL 300 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~A~~aL 300 (561)
..+++.| +++.|+.+|.+++.++++.|+++|.+|+.+ ++++..+...|++++|+.++...+ ......++++|
T Consensus 156 ~~vv~~G--aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 156 KAVVDGG--AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 7899999 999999999999999999999999999986 568889999999999999998654 34578899999
Q ss_pred HHhhCCchhhH-HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHH
Q 008560 301 RNLAGFSEIKE-NFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEV 379 (561)
Q Consensus 301 ~nLs~~~~~r~-~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~ 379 (561)
.|++.+..... .....|+++.|+.++.+++.+++..++++|.+++.+++.....+...|+++.|+.++.+.+ ..++..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~ 312 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTP 312 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHH
Confidence 99998875444 3446789999999999999999999999999999999888888999999999999998865 589999
Q ss_pred HHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHH
Q 008560 380 AVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVE 457 (561)
Q Consensus 380 a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 457 (561)
++.+|++++. ++.....+.+.|+++.|+.+|.+.+..+++.|+++|++++. +++....+.+.|+++.|+.++.+++..
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 9999999986 67778888899999999999999999999999999999997 678899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc--ccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-------CCchHHHHHHHcCch
Q 008560 458 EKESAAKALSTLMLY--AGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-------HCRKCRKQMVAAGAC 528 (561)
Q Consensus 458 v~~~A~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-------~~~~~r~~i~~~g~i 528 (561)
++..|+++|.+++.. ..+...+ .+.++++.|+++|...+. .....++.+|.++. ..+..+..|.+.|++
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l-~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYL-VHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHH-HHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH-HHCcCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 999999999999964 3344445 456999999999987543 33456788887774 234456678899999
Q ss_pred HHHHHhhccCccc
Q 008560 529 LHLRKLVEMDIEG 541 (561)
Q Consensus 529 ~~L~~Ll~~~~~~ 541 (561)
..|..|..++..+
T Consensus 471 ~~ie~Lq~~~n~~ 483 (529)
T 3tpo_A 471 DKIEALQRHENES 483 (529)
T ss_dssp HHHTGGGGCSSHH
T ss_pred HHHHHHHcCCCHH
Confidence 9999999888765
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=306.13 Aligned_cols=359 Identities=18% Similarity=0.197 Sum_probs=287.9
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC------------CHHHHHHHHHHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS------------SLEMKEKTVASI 216 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~------------~~~~~e~a~~~L 216 (561)
...+..++..+.+.+.+. ..+.|..+.. +++.+..+++.|.+|.|+.+|+.. +++++.+|+++|
T Consensus 31 ~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 31 VEMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp --------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 445777888887766653 5666666655 445778889999999999999863 379999999999
Q ss_pred HHHhcC-CcchHHHHHhchhhH----------HHHHHHHhcCC--HH-----HHH-------HHHHHHHHhcCCCchHHH
Q 008560 217 ARVSMV-DSSKHVLIAEGLLLL----------NHLIRVLESGS--GF-----AKE-------RACVALQALSFSKENARA 271 (561)
Q Consensus 217 ~~La~~-~~~~~~i~~~g~~~i----------~~Lv~lL~~~~--~~-----~~~-------~aa~~L~~Ls~~~~~~~~ 271 (561)
.||+.. ++......+.| ++ +.+++++++.+ .+ +++ +|+++|.+++.++++|..
T Consensus 107 ~ni~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~ 184 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRREIR--VLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 184 (458)
T ss_dssp HHHHHHSCSCHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHccCcchhHHHHHHH--HHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999975 44444555556 55 55677776642 12 444 999999999999999999
Q ss_pred HHhcCCHHHHHHHHhc-----------CChHHHHHHHHHHHHhhCCch-hhHHHH-hhhhHHHHHHHhhcCCHHHHHHHH
Q 008560 272 IGSRGGISSLLEICQA-----------GTPGSQAFAAGVLRNLAGFSE-IKENFI-EENAVMVLLGLVASGTALAQENVF 338 (561)
Q Consensus 272 i~~~g~i~~Lv~ll~~-----------~~~~~~~~A~~aL~nLs~~~~-~r~~i~-~~g~v~~Lv~lL~~~~~~~~~~a~ 338 (561)
|.+.|++++|+.++.. .++..+..|+++|.||+.+++ ++..+. ..|+++.|+.+|.+++.++++.|+
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~ 264 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999952 235678999999999998875 666665 457799999999999999999999
Q ss_pred HHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHH-hcchHHHHHHHhcCCCH
Q 008560 339 GCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLV-SDGFVVRLVNVLNCGVL 415 (561)
Q Consensus 339 ~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~-~~~~i~~Lv~lL~~~~~ 415 (561)
++|.||+.. ++.+|..+.+.|+++.|+++|....+..+++.++.+|+||+. +++++..+. ..|+++.|+++|.+++.
T Consensus 265 ~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 999999985 677899999999999999987665567899999999999998 888888888 57999999999987654
Q ss_pred ----HHHHHHHHHHHHHcC----CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc-cccchhhHhhcCCCH
Q 008560 416 ----SVRIAAARAVSMLGI----NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML-YAGNRKILRKDERGI 486 (561)
Q Consensus 416 ----~~~~~A~~aL~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~i 486 (561)
.+++.|+++|++|+. ++++++.+.+.|+++.|+.+|.+++..+++.|+++|.+|+. +..++..+ .+.+++
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-~~~G~I 423 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-WDMGAV 423 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH-HHHTHH
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCH
Confidence 589999999999994 78999999999999999999999999999999999999995 56666666 456899
Q ss_pred HHHHHhccCCccchhhHHHHHHHHHhcCC
Q 008560 487 VTVVQLLDPLIQNLDKKYPVAILAALVHC 515 (561)
Q Consensus 487 ~~Lv~lL~~~~~~~~k~~a~~~L~~La~~ 515 (561)
+.|+++|.+... ..++.|.++|.+|+.+
T Consensus 424 ~~Lv~LL~s~~~-~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 424 SMLKNLIHSKHK-MIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHTTTTCSSH-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHcC
Confidence 999999987543 4578899999999843
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.2e-34 Score=308.61 Aligned_cols=358 Identities=20% Similarity=0.190 Sum_probs=299.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHH
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMVDS-SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENAR 270 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~-~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~ 270 (561)
.+|.|+.+|+++++++|+.|+.+|.+|+.+++ .+..+++.| +++.|+++|++++++++..|+++|.+|+.. ++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTT--HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999997654 577899999 999999999999999999999999999986 78999
Q ss_pred HHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh--------cC--------CHHH
Q 008560 271 AIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA--------SG--------TALA 333 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~--------~~--------~~~~ 333 (561)
.|.+.|+++.|+++|+ ++++..++.|+++|+||+.++++|..+++ |+++.|++++. ++ +..+
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 9999999999999999 88999999999999999999999999999 99999999993 22 3456
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHh-CcHHHHHHhhhcC-----CCHHHHHHHHHHHHHhhcC-----------------
Q 008560 334 QENVFGCLCNLVSDDESLKLLIVRE-GGIGSLKSYWDSV-----SAVKSLEVAVELLSQLASC----------------- 390 (561)
Q Consensus 334 ~~~a~~~L~~L~~~~~~~r~~~~~~-g~i~~Lv~lL~~~-----~~~~~~e~a~~aL~~L~~~----------------- 390 (561)
..+|+++|.||+.+ +.+|..+.+. |+++.|+.+++++ .+.+..+.++.+|++|+..
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 66999999999988 7789999987 9999999999852 3347889999999999731
Q ss_pred ----------------------------------hhhHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCH---
Q 008560 391 ----------------------------------LPIAEVLVSDGFVVRLVNVLNCG-VLSVRIAAARAVSMLGINS--- 432 (561)
Q Consensus 391 ----------------------------------~~~~~~l~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~--- 432 (561)
+.+.+.+++.++++.|+.+|.+. ++.+++.|+++|++||...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 11233455567899999999754 6899999999999999731
Q ss_pred --HH-HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccc-----hhhHH
Q 008560 433 --KA-RKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQN-----LDKKY 504 (561)
Q Consensus 433 --~~-~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-----~~k~~ 504 (561)
.. +..+.++|++|.|++++.+++.+++..|+++|.+|+.+..++..+.. +++++|+++|...... .....
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 34455789999999999999999999999999999998887776643 6999999999765321 12335
Q ss_pred HHHHHHHhc-CCchHHHHHHHcCchHHHHHhhccC-ccchHH----HHHhhc-cCcccc
Q 008560 505 PVAILAALV-HCRKCRKQMVAAGACLHLRKLVEMD-IEGANK----LLESLG-RGKIWG 556 (561)
Q Consensus 505 a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~~-~~~akk----~~~~l~-~~~~~~ 556 (561)
++.+|.++. .+++....+.++|++++|++|+.++ .+.++| +++.+. +..+|+
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 777888886 7888999999999999999999998 666654 444444 344444
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.4e-33 Score=306.36 Aligned_cols=398 Identities=17% Similarity=0.131 Sum_probs=347.5
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcC-Cc
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDD-KNVVIAVAQGVVPVLVKLMDSSS-LEMKEKTVASIARVSMV-DS 224 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~~~e~a~~~L~~La~~-~~ 224 (561)
....++.++..|++++++.+..|+..|..++..++ .....+++.|+||.|+.+|.+++ +.+++.|+.+|.+++.+ ++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34568999999999999999999999999987654 67788899999999999999887 99999999999999986 67
Q ss_pred chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHH-hcCChHHHHHHHHHHHH
Q 008560 225 SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEIC-QAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~A~~aL~n 302 (561)
++..+++.| +++.|+.+|.+++..+++.|+++|.+|+.+. +++..+...|+++.|+.++ .+.++..+..|+++|.+
T Consensus 152 ~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 152 NTKVVIDHG--AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 888899999 9999999999999999999999999999764 5788888899999999999 66788999999999999
Q ss_pred hhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHH
Q 008560 303 LAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVE 382 (561)
Q Consensus 303 Ls~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~ 382 (561)
|+............|+++.|+.++.+++..++..++++|.+++.+.+.....+.+.|+++.|+.+|.+.+ +.+++.|+.
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~ 308 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALR 308 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHH
Confidence 9988655555667899999999999999999999999999999988877788899999999999998875 589999999
Q ss_pred HHHHhhc-ChhhHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHH
Q 008560 383 LLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCG-VLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEK 459 (561)
Q Consensus 383 aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 459 (561)
+|++|+. ++.....+.+.|+++.|+.+|.+. +..++..|+++|.+++. +++....+.+.|+++.|+.++.++++.++
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9999997 777788888899999999999998 89999999999999997 67788899999999999999998899999
Q ss_pred HHHHHHHHHhhcc--ccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcC------------CchHHHHHHHc
Q 008560 460 ESAAKALSTLMLY--AGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVH------------CRKCRKQMVAA 525 (561)
Q Consensus 460 ~~A~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~------------~~~~r~~i~~~ 525 (561)
..|+.+|.+++.. +.....++ +.++++.|+++|..... ..+..++.+|.++.. .......+.+.
T Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~d~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 466 (528)
T 4b8j_A 389 KEAAWAISNATSGGSHDQIKYLV-SEGCIKPLCDLLICPDI-RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA 466 (528)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC
Confidence 9999999999975 45555554 56899999999987533 446678999998862 22367889999
Q ss_pred CchHHHHHhhccCccch----HHHHHhhc
Q 008560 526 GACLHLRKLVEMDIEGA----NKLLESLG 550 (561)
Q Consensus 526 g~i~~L~~Ll~~~~~~a----kk~~~~l~ 550 (561)
|++..|..|.+++.++. .+++++++
T Consensus 467 ~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 467 EGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999999998887653 34555544
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.4e-33 Score=303.79 Aligned_cols=388 Identities=20% Similarity=0.186 Sum_probs=341.4
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHV 228 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~ 228 (561)
..++.++..|++++++.+..|+..|.+++.+++.++..+.+.|+++.|+.+|+++++.++..++.+|.+++.. ++++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3688899999999999999999999999999888888899999999999999999999999999999999975 678889
Q ss_pred HHHhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 229 LIAEGLLLLNHLIRVLESGS-GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
+.+.| +++.|+++|++++ ...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..++++|.||+...
T Consensus 181 i~~~~--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 181 ILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHCC--CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999874 56677889999999999899999999999999999999999999999999999999876
Q ss_pred hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHH
Q 008560 308 EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQ 386 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~ 386 (561)
.... ...|+++.|++++.+++..++..++++|.+|+..++..+..+.+.|+++.|++++... +++.+++.++.+|++
T Consensus 259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4322 2358999999999999999999999999999999888999999999999999999873 446899999999999
Q ss_pred hhcC-hh---hHHHHHhcchHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHH-
Q 008560 387 LASC-LP---IAEVLVSDGFVVRLVNVLNCGV-LSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKE- 460 (561)
Q Consensus 387 L~~~-~~---~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~- 460 (561)
|+.. ++ .+..+.+.|+++.|+.+|.+.+ ..++..++++|++++.+++.+..+.+.|+++.|+.++.++++.+|.
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 416 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 9973 33 4678888999999999998876 6999999999999999888889999999999999999865555544
Q ss_pred ---------------------HHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHH
Q 008560 461 ---------------------SAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCR 519 (561)
Q Consensus 461 ---------------------~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r 519 (561)
.+..+|++|+.+..++..+. +.++++.|+++|..... ..++.+..+|.+++.++..+
T Consensus 417 a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~-~~~~v~~l~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~ 494 (529)
T 1jdh_A 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAA 494 (529)
T ss_dssp ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSHHHH
T ss_pred HhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHh-ccCCccHHHHHHcCCch-HHHHHHHHHHHHHhcCHHHH
Confidence 56677788888888887774 56899999999977543 34677999999999889999
Q ss_pred HHHHHcCchHHHHHhhccCccchH
Q 008560 520 KQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 520 ~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
..+.+.|+++.|.+|+++++++.+
T Consensus 495 ~~i~~~~~~~~L~~l~~~~~~~v~ 518 (529)
T 1jdh_A 495 EAIEAEGATAPLTELLHSRNEGVA 518 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred HHHHHcCChHHHHHHhcCCCHHHH
Confidence 999999999999999999888743
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=298.79 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=282.2
Q ss_pred hHHHHHHHhcC------------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCCh----------HHHHHhhcCCC--H
Q 008560 151 ESRNLITRLQI------------GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVV----------PVLVKLMDSSS--L 206 (561)
Q Consensus 151 ~v~~Lv~~L~~------------~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~--~ 206 (561)
-++.|++.|+. ++++.+.+|+.+|.+++.++++......+.|++ +.+++++.+.. .
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 46778888874 347999999999999999988888777777877 66777776642 1
Q ss_pred H-----HHH-------HHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc-----------CCHHHHHHHHHHHHHhc
Q 008560 207 E-----MKE-------KTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES-----------GSGFAKERACVALQALS 263 (561)
Q Consensus 207 ~-----~~e-------~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~Ls 263 (561)
+ +++ +|+++|.+++.++++|..|++.| ++++|+.+|.. .+..++..|+++|.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 151 DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp CCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT--HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC--CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 2 555 99999999999999999999999 99999999952 24678999999999999
Q ss_pred CCCc-hHHHHHh-cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC--chhhHHHHhhhhHHHHHHHh-hcCCHHHHHHHH
Q 008560 264 FSKE-NARAIGS-RGGISSLLEICQAGTPGSQAFAAGVLRNLAGF--SEIKENFIEENAVMVLLGLV-ASGTALAQENVF 338 (561)
Q Consensus 264 ~~~~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~--~~~r~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~ 338 (561)
.+++ ++..+.. .|+|+.|+.+|+++++..+..|+++|+||+.. +++|..+++.|+++.|+++| .+++..+++.++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8765 6777765 45599999999999999999999999999985 47899999999999999975 567789999999
Q ss_pred HHHHHhcCCChHHHHHHH-HhCcHHHHHHhhhcCCCH---HHHHHHHHHHHHhhc----ChhhHHHHHhcchHHHHHHHh
Q 008560 339 GCLCNLVSDDESLKLLIV-REGGIGSLKSYWDSVSAV---KSLEVAVELLSQLAS----CLPIAEVLVSDGFVVRLVNVL 410 (561)
Q Consensus 339 ~~L~~L~~~~~~~r~~~~-~~g~i~~Lv~lL~~~~~~---~~~e~a~~aL~~L~~----~~~~~~~l~~~~~i~~Lv~lL 410 (561)
.+|+||+..++.+|..++ ..|+++.|+++|...++. .+++.|+++|+||+. +++++..+.+.|+++.|+.+|
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 999999996666788887 789999999999876543 589999999999994 889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccc
Q 008560 411 NCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGN 475 (561)
Q Consensus 411 ~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~ 475 (561)
++++..++++|+++|++|+. +++++..+.+.|+++.|+.+++++++.+++.|+.+|.+|+.+.+.
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99999999999999999995 799999999999999999999999999999999999999976543
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.9e-32 Score=294.29 Aligned_cols=397 Identities=15% Similarity=0.144 Sum_probs=345.1
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC-Ccc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQE-DDKNVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMV-DSS 225 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~-~~~ 225 (561)
...++.++..|++++++.+..|+..|..++.. ++.+...+++.|+++.|+.+|.++ ++.++..|+.+|.+++.. ++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 44689999999999999999999999999764 345667788999999999999997 899999999999999986 457
Q ss_pred hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 226 KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 226 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
+..+++.| +++.|+.+|++++..+++.|+++|.+|+.+ ++++..+...|+++.|+.++.+.++..+..|+++|.+|+
T Consensus 166 ~~~~~~~g--~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDAD--AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTT--CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 77888899 999999999999999999999999999987 467888888999999999999989999999999999999
Q ss_pred CCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH
Q 008560 305 GFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL 383 (561)
Q Consensus 305 ~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a 383 (561)
... .........|+++.|+.++.+++..++..++++|.+|+...+.....+++.|+++.|+.++.+.+ ..+++.|+.+
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~ 322 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRA 322 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHH
Confidence 876 55566677899999999999999999999999999999988877888899999999999998754 5899999999
Q ss_pred HHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHH
Q 008560 384 LSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKES 461 (561)
Q Consensus 384 L~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 461 (561)
|++++. ++.....+.+.|+++.|+.+|.+.+..++..|+++|.+++. +++..+.+.+.|+++.|+.++.++++.++..
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999996 66777788888999999999999999999999999999997 6778888899999999999999899999999
Q ss_pred HHHHHHHhhccc----cchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCC------------chHHHHHHHc
Q 008560 462 AAKALSTLMLYA----GNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHC------------RKCRKQMVAA 525 (561)
Q Consensus 462 A~~aL~~L~~~~----~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~------------~~~r~~i~~~ 525 (561)
|+.+|.+++... ...+.+. +.++++.|+.+|..... ..+..++.+|.++... ......+.+.
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~-~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADN-RIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc
Confidence 999999998642 4455554 46899999999987533 4466789999888632 2356779999
Q ss_pred CchHHHHHhhccCccch----HHHHHhhc
Q 008560 526 GACLHLRKLVEMDIEGA----NKLLESLG 550 (561)
Q Consensus 526 g~i~~L~~Ll~~~~~~a----kk~~~~l~ 550 (561)
|++..|..|.+++.++. ..++++++
T Consensus 481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 481 GGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp THHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999999998887764 34444444
No 14
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=303.09 Aligned_cols=387 Identities=20% Similarity=0.176 Sum_probs=344.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcchHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~~~i 229 (561)
.++.|+..|++++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|+++++.++..++.+|.+++. +++++..+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 67889999999999999999999999999888888889999999999999999999999999999999996 67889999
Q ss_pred HHhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCch
Q 008560 230 IAEGLLLLNHLIRVLESGS-GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~ 308 (561)
.+.| +++.|+++|++++ ...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..++++|.||+....
T Consensus 179 ~~~g--~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 179 LASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHcC--ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 9999 9999999999874 678889999999999999999999999999999999999999999999999999997653
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC-CHHHHHHHHHHHHHh
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS-AVKSLEVAVELLSQL 387 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~-~~~~~e~a~~aL~~L 387 (561)
.. ....++++.|++++.+++..+++.++++|.+|+..++..+..+.+.|+++.|+.++...+ ...+++.++.+|++|
T Consensus 257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 32 223589999999999999999999999999999998888999999999999999998744 368999999999999
Q ss_pred hcC-h---hhHHHHHhcchHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCC--------
Q 008560 388 ASC-L---PIAEVLVSDGFVVRLVNVLNCGV-LSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGK-------- 454 (561)
Q Consensus 388 ~~~-~---~~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-------- 454 (561)
+.. + ..+..+.+.|+++.|+++|.+.+ ..+++.|+++|++|+.+++.++.+.+.|+++.|+.++.+.
T Consensus 335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 963 3 24556778899999999998875 7999999999999999888889999999999999998742
Q ss_pred --------------CHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHH
Q 008560 455 --------------AVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRK 520 (561)
Q Consensus 455 --------------~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~ 520 (561)
+.++++.++.+|.+|+.+..++..+ .+.++++.|+++|..... ..++.++.+|.+++.+++.+.
T Consensus 415 ~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l-~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~ 492 (644)
T 2z6h_A 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAE 492 (644)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHH-HHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSHHHHH
T ss_pred hhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHH-HhCCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCHHHHH
Confidence 3567888999999999988888777 456899999999976544 346779999999998899999
Q ss_pred HHHHcCchHHHHHhhccCccchH
Q 008560 521 QMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 521 ~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
.|.+.|+++.|.+++.++++..+
T Consensus 493 ~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 493 AIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHcCChhHHHHHHcCCCHHHH
Confidence 99999999999999998887654
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.8e-32 Score=295.45 Aligned_cols=386 Identities=19% Similarity=0.167 Sum_probs=333.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcch
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVA-QGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~~~~ 226 (561)
...++.++..|+++++..|..|+..|.+++.+++ ++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 3468899999999999999999999999987554 6666665 49999999999765 8999999999999999988899
Q ss_pred HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 227 HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
..+.+.| +++.|+++|+++++.++..|+++|.+|+.+ ++.+..+.+.|+++.|++++.++++..+..++.+|.+++.
T Consensus 95 ~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 95 LAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999987 4677788889999999999999999999999999999998
Q ss_pred C-chhhHHHHhhhhHHHHHHHhhcCCH-HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH
Q 008560 306 F-SEIKENFIEENAVMVLLGLVASGTA-LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL 383 (561)
Q Consensus 306 ~-~~~r~~i~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a 383 (561)
. ++++..+.+.|+++.|++++.+++. ..+..++.+|.+++... .++..+.+.|+++.|+.++.++ ++.+++.++++
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~ 250 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWT 250 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHH
Confidence 6 5899999999999999999987654 67788999999999854 4789999999999999999886 46899999999
Q ss_pred HHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccC--CCHHHHH
Q 008560 384 LSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDG--KAVEEKE 460 (561)
Q Consensus 384 L~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~--~~~~v~~ 460 (561)
|.+|+....... ...++++.|+++|.+.++.+++.|+++|++|+. ++++++.+.+.|+++.|+.++.. .++.+++
T Consensus 251 L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 251 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 999997443211 123789999999999999999999999999998 46899999999999999999974 3478999
Q ss_pred HHHHHHHHhhccccc----hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhc
Q 008560 461 SAAKALSTLMLYAGN----RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVE 536 (561)
Q Consensus 461 ~A~~aL~~L~~~~~~----~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~ 536 (561)
.|+.+|.+|+...+. +..+ .+.++++.|+++|.+......++.++++|.+++.++..+..+.+.|+++.|.+++.
T Consensus 329 ~a~~~L~nl~~~~~~~~~~~~~i-~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 329 PAICALRHLTSRHQEAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHH-HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence 999999999875433 4455 45689999999998754334567799999999988888999999999999999997
Q ss_pred cCccch
Q 008560 537 MDIEGA 542 (561)
Q Consensus 537 ~~~~~a 542 (561)
.++++.
T Consensus 408 ~~~~~v 413 (529)
T 1jdh_A 408 RAHQDT 413 (529)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 655443
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7.2e-32 Score=291.38 Aligned_cols=358 Identities=15% Similarity=0.180 Sum_probs=310.8
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchHH
Q 008560 151 ESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKHV 228 (561)
Q Consensus 151 ~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~~ 228 (561)
.|+.|++.|+. ++++.|..|+..|.+++.+++++++.+++.|+||.|+.+|+++++++++.|+++|.+|+.+ ++.+..
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999975 5688999999999999999999999999999999999999999999999999999999987 467888
Q ss_pred HHHhchhhHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCCchHHH-HHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 229 LIAEGLLLLNHLIRVLESGS-----GFAKERACVALQALSFSKENARA-IGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
+.+.| ++++|+.+|...+ ......++++|.+++.+...... ....|+++.|+.++.+.++..+..|+++|.+
T Consensus 181 v~~~G--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 181 VIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHTT--CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHcC--ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999 9999999998653 45788999999999987654433 3346789999999999999999999999999
Q ss_pred hhCCchh-hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHH
Q 008560 303 LAGFSEI-KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAV 381 (561)
Q Consensus 303 Ls~~~~~-r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~ 381 (561)
|+..++. ...+++.|+++.|++++.+++..++..++.+|.|++.+++..+..+.+.|+++.|+.++.+++ ..+++.++
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~ 337 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEAT 337 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHH
Confidence 9988754 556679999999999999999999999999999999999989999999999999999998765 48999999
Q ss_pred HHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHH
Q 008560 382 ELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEE 458 (561)
Q Consensus 382 ~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 458 (561)
++|.||+. ++..+..+.+.|+++.|+.+|.+++..++..|+++|.|++. +.+....+.+.|+++.|+.+|...++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 99999996 77778888899999999999999999999999999999986 6788899999999999999999999999
Q ss_pred HHHHHHHHHHhhccc------cchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 459 KESAAKALSTLMLYA------GNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 459 ~~~A~~aL~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
+..+.++|.++.... .....++.+.+|+..|-.+..+.+.. ..+.|..+|-..
T Consensus 418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~-i~~~A~~iie~y 476 (510)
T 3ul1_B 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES-VYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 999999999997422 11223346778888887776664443 345577777543
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=9.1e-32 Score=304.37 Aligned_cols=397 Identities=20% Similarity=0.180 Sum_probs=346.9
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcchHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSKHV 228 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~~~ 228 (561)
..++.|+..|+++++..+..|+..|.+++..++.++..+.+.|+|+.|+.+|++++..+++.++.+|.+++. +++++..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 367889999999999999999999999999988889989899999999999999999999999999999996 4678888
Q ss_pred HHHhchhhHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 229 LIAEGLLLLNHLIRVLESGS-GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
+.+.| +++.|+.+|++++ ...++.++.+|.+|+..++++..+.+.|+++.|+.++.++++..+..|+++|.+|+...
T Consensus 314 i~~~~--~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 314 ILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHTTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 89999 9999999999875 45667889999999998889999999999999999999999999999999999999765
Q ss_pred hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHH
Q 008560 308 EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQ 386 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~ 386 (561)
... ....++++.|++++.+.+..++..|+++|.+|+.+++..+..+.+.|+++.|++++... +...+++.|+.+|++
T Consensus 392 ~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 392 TKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 321 22468999999999999999999999999999999888899999999999999999874 334899999999999
Q ss_pred hhc-Chh---hHHHHHhcchHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCC------
Q 008560 387 LAS-CLP---IAEVLVSDGFVVRLVNVLNCGV-LSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKA------ 455 (561)
Q Consensus 387 L~~-~~~---~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~------ 455 (561)
|+. +++ .+..+...++++.|+++|.+.+ ..+++.|+++|++|+.+++.+..+.+.|+++.|+.++.+++
T Consensus 470 L~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 549 (780)
T 2z6g_A 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 549 (780)
T ss_dssp TTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHH
Confidence 996 333 3567778899999999998776 49999999999999998888899999999999999996422
Q ss_pred ----------------HHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHH
Q 008560 456 ----------------VEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCR 519 (561)
Q Consensus 456 ----------------~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r 519 (561)
+++++.++.+|.+|+.+..++..+ .+.++++.|+++|.+... ..+..++.+|.+++.+++.+
T Consensus 550 aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l-~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~~L~~~~~~~ 627 (780)
T 2z6g_A 550 TSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI-RGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAA 627 (780)
T ss_dssp TC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHH-HHTCCHHHHHHGGGCSCH-HHHHHHHHHHHHHHTSHHHH
T ss_pred HhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHH-HHCCcHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCHHHH
Confidence 457888999999999888888777 456899999999987543 34667999999999999999
Q ss_pred HHHHHcCchHHHHHhhccCccchH----HHHHhhccC
Q 008560 520 KQMVAAGACLHLRKLVEMDIEGAN----KLLESLGRG 552 (561)
Q Consensus 520 ~~i~~~g~i~~L~~Ll~~~~~~ak----k~~~~l~~~ 552 (561)
..|.+.|+++.|.+|+++++++.+ +++.++..+
T Consensus 628 ~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999998887653 555555543
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.4e-31 Score=290.62 Aligned_cols=358 Identities=16% Similarity=0.186 Sum_probs=312.3
Q ss_pred HhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchH
Q 008560 150 AESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~ 227 (561)
..|+.|+..|+. .+++.+..|+..|.+++.++++++..+++.|+||.|+.+|.++++++++.|+++|.+|+.+ ++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 468899999964 5688999999999999999999999999999999999999999999999999999999986 56888
Q ss_pred HHHHhchhhHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCchHHH-HHhcCCHHHHHHHHhcCChHHHHHHHHHHH
Q 008560 228 VLIAEGLLLLNHLIRVLESG-----SGFAKERACVALQALSFSKENARA-IGSRGGISSLLEICQAGTPGSQAFAAGVLR 301 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~ 301 (561)
.+++.| ++++|+.+|... .......++++|.+++.+...... ....|+++.|+.++.++++..+..|+++|.
T Consensus 199 ~i~~~g--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 199 LVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHTT--CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHcC--CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999 999999999865 345788999999999987654433 334678999999999999999999999999
Q ss_pred HhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHH
Q 008560 302 NLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVA 380 (561)
Q Consensus 302 nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a 380 (561)
+++..+ +....+++.|+++.|++++.+++..++..++.+|.|++.+++..+..+.+.|+++.|+.++.+++ +.+++.|
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a 355 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEA 355 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHHHH
Confidence 999887 45566679999999999999999999999999999999999989999999999999999998765 5899999
Q ss_pred HHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHH
Q 008560 381 VELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVE 457 (561)
Q Consensus 381 ~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 457 (561)
+++|.|++. ++..+..+.+.|+++.|+.+|.+++..++..|+++|+|++. +++....+.+.|+++.|+.+|.+.++.
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH
Confidence 999999997 67778888899999999999999999999999999999986 678889999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc------cchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHH
Q 008560 458 EKESAAKALSTLMLYA------GNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAA 511 (561)
Q Consensus 458 v~~~A~~aL~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~ 511 (561)
++..+.++|.++.... .....++.+.+|+..|-.+..+.+. ...+.|..+|-.
T Consensus 436 i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~-~i~~~A~~iie~ 494 (529)
T 3tpo_A 436 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE-SVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 9999999999997422 1222344677899988877766543 334557777744
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-32 Score=299.89 Aligned_cols=383 Identities=19% Similarity=0.166 Sum_probs=332.5
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcchH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQ-GVVPVLVKLMDSS-SLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
..++.|+..|+++++..|..|+..|.+++.+++ ++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+++++.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 358889999999999999999999999998764 66666654 9999999999875 79999999999999999988999
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC-
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG- 305 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~- 305 (561)
.+.+.| +++.|+.+|++++..++..|+++|.+|+... +.+..+.+.|+++.|+++++++++..+..++.+|++++.
T Consensus 93 ~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 93 AIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHTTT--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999 9999999999999999999999999999864 577788889999999999999999888999999999997
Q ss_pred CchhhHHHHhhhhHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 306 FSEIKENFIEENAVMVLLGLVASGT-ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 306 ~~~~r~~i~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
+++++..+++.|+++.|++++.+.+ ...++.++.+|.+++... .+|..+++.|+++.|++++...+ ..+++.++.+|
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L 248 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTL 248 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 5689999999999999999998765 468899999999999754 47999999999999999998864 68999999999
Q ss_pred HHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccC-C-CHHHHHH
Q 008560 385 SQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDG-K-AVEEKES 461 (561)
Q Consensus 385 ~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~-~-~~~v~~~ 461 (561)
.+|+...... ....++++.|+++|.+.+..+++.|+++|++|+. ++++++.+.+.|+++.|+.++.. + .+.++..
T Consensus 249 ~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 249 RNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 9999743221 1123789999999999999999999999999998 46889999999999999999985 3 3799999
Q ss_pred HHHHHHHhhccccc----hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhcc
Q 008560 462 AAKALSTLMLYAGN----RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEM 537 (561)
Q Consensus 462 A~~aL~~L~~~~~~----~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~ 537 (561)
|+.+|.+|+...+. +..+ .+.++++.|+++|.+......++.++++|.+++.++..+..+.+.|+++.|++++..
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHH-HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHH-HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 99999999965432 3334 456899999999987543345778999999999888899999999999999999976
Q ss_pred Ccc
Q 008560 538 DIE 540 (561)
Q Consensus 538 ~~~ 540 (561)
+..
T Consensus 406 ~~~ 408 (644)
T 2z6h_A 406 AHQ 408 (644)
T ss_dssp HHH
T ss_pred cch
Confidence 543
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1e-30 Score=277.15 Aligned_cols=384 Identities=15% Similarity=0.106 Sum_probs=329.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC-CcchH
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQ-EDDKNVVIAVAQ-GVVPVLVKLMDSS-SLEMKEKTVASIARVSMV-DSSKH 227 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~-~~~~~ 227 (561)
++.+++.+++++++.|..|+..|..++. +.+.....+++. |+++.|+.+|+++ ++.++..|+.+|.+++.. ++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7889999999999999999999999875 222233445666 9999999999998 899999999999999975 45667
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~ 305 (561)
.+++.| +++.|+++|+++++.+|+.|+++|.+++.+. +++..+...|+++.|+.++.+ .++..+..|+++|.+++.
T Consensus 102 ~~~~~~--~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 102 IVIQAG--AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHhCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 778899 9999999999999999999999999999875 577888889999999999995 688999999999999997
Q ss_pred Cc--hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH
Q 008560 306 FS--EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL 383 (561)
Q Consensus 306 ~~--~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a 383 (561)
.. ..+..++ .++++.|++++.+++..++..++++|.+++...+..+..+.+.|+++.|++++.+.+ +.+++.++.+
T Consensus 180 ~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHH
Confidence 64 3333333 799999999999999999999999999999988777888889999999999998654 5999999999
Q ss_pred HHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHH
Q 008560 384 LSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKES 461 (561)
Q Consensus 384 L~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~ 461 (561)
|++++. .+...+.+.+.|+++.|+.+|.+.++.++..|+++|.+++. +++..+.+.+.|+++.|+.++.++++.+|..
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999997 55566777888999999999999999999999999999997 6788888999999999999999999999999
Q ss_pred HHHHHHHhhcc--ccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCc------------hHHHHHHHcCc
Q 008560 462 AAKALSTLMLY--AGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCR------------KCRKQMVAAGA 527 (561)
Q Consensus 462 A~~aL~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~------------~~r~~i~~~g~ 527 (561)
|+.+|.+++.. +...+.+. +.++++.|+++|.... ...++.++.+|.+++... .....+.+.|+
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 415 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMD-SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYG 415 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSC-HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCc
Confidence 99999999864 34455554 4589999999998653 345677999998887322 24578899999
Q ss_pred hHHHHHhhccCccc
Q 008560 528 CLHLRKLVEMDIEG 541 (561)
Q Consensus 528 i~~L~~Ll~~~~~~ 541 (561)
++.|..|.+++...
T Consensus 416 ~~~l~~l~~~~~~~ 429 (450)
T 2jdq_A 416 LDKIEFLQSHENQE 429 (450)
T ss_dssp HHHHHHHHCHHHHH
T ss_pred HHHHHHHHcCCCHH
Confidence 99999998876654
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.5e-31 Score=299.59 Aligned_cols=383 Identities=20% Similarity=0.218 Sum_probs=318.4
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
..++.++..|++++.+.+..++..+... ++..+ ..|+|+.|+.+|.+.++.+++.|+.+|.+|+.+++++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3578899999998888877777665432 23334 4899999999999999999999999999999988777777
Q ss_pred HH-hchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 230 IA-EGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 230 ~~-~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
.. .| +++.|+++|+++ +.+++..|+.+|.+|+.+++++..+.+.|+++.|+++++++++..+..|+++|.||+...
T Consensus 188 ~~~~~--~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 188 MRSPQ--MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp TTCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HhccC--hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 75 58 999999999876 899999999999999999888989999999999999999999999999999999999875
Q ss_pred -hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 008560 308 -EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQ 386 (561)
Q Consensus 308 -~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~ 386 (561)
+.+..+.+.|+++.|++++.+++..++..++.+|.+++..++..+..+.+.|+++.|+++++..++...++.++.+|.+
T Consensus 266 ~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6777777999999999999998889999999999999998888999999999999999999988777788899999999
Q ss_pred hhcChhhHHHHHhcchHHHHH---------------------------------------HHhcCCCHHHHHHHHHHHHH
Q 008560 387 LASCLPIAEVLVSDGFVVRLV---------------------------------------NVLNCGVLSVRIAAARAVSM 427 (561)
Q Consensus 387 L~~~~~~~~~l~~~~~i~~Lv---------------------------------------~lL~~~~~~~~~~A~~aL~~ 427 (561)
|+.++.++..+++.|+++.|+ .+|.+.+..+++.|+++|.+
T Consensus 346 Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999888888877666555554 44555677888889999999
Q ss_pred HcC-CHHHHHHHHhCCChHHHHHhccC-C-CHHHHHHHHHHHHHhhccccc----hhhHhhcCCCHHHHHHhccCCccch
Q 008560 428 LGI-NSKARKEMGECGCIGPLIKMLDG-K-AVEEKESAAKALSTLMLYAGN----RKILRKDERGIVTVVQLLDPLIQNL 500 (561)
Q Consensus 428 L~~-~~~~~~~i~~~g~i~~Lv~ll~~-~-~~~v~~~A~~aL~~L~~~~~~----~~~~~~~~~~i~~Lv~lL~~~~~~~ 500 (561)
|+. +++.++.+.+.|+++.|+.++.. . .+.++..|+.+|.+|+...+. +..+ .+.++++.|+++|.+.....
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v-~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV-RLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHcCCHHHHHHHhcCCChHH
Confidence 987 46788999999999999999985 3 348999999999999865433 3344 45689999999998764434
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCccch
Q 008560 501 DKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDIEGA 542 (561)
Q Consensus 501 ~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~~~a 542 (561)
.++.++++|.+++.++..+..+.+.|+++.|++++..+..+.
T Consensus 505 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 505 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 567899999999988899999999999999999997654433
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-30 Score=282.86 Aligned_cols=362 Identities=18% Similarity=0.187 Sum_probs=321.0
Q ss_pred HhHHHHHHHhcCCC-HHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchH
Q 008560 150 AESRNLITRLQIGS-AESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~ 227 (561)
..++.|+..|++++ ++.+..|+..|.+++.++++++..+++.|+++.|+.+|.++++.+++.|+.+|.+|+.+ +.++.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 46888999999876 89999999999999999899999999999999999999999999999999999999976 45688
Q ss_pred HHHHhchhhHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 228 VLIAEGLLLLNHLIRVL-ESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
.+.+.| ++++|+.+| ++.+..++..++++|.+|+............|+++.|+.++.+.++..+..|+++|.+|+..
T Consensus 197 ~i~~~g--~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 197 LVLANG--ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHTT--CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCC--cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 888999 999999999 66789999999999999998754444445689999999999999999999999999999988
Q ss_pred chhh-HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 307 SEIK-ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 307 ~~~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
.+.+ ..+++.|+++.|+.+|.+++..++..|+.+|.+|+.+++..+..+.+.|+++.|+.+|.++.++.++..|+++|.
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7554 677789999999999999999999999999999999988888899999999999999998746799999999999
Q ss_pred Hhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 008560 386 QLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKESA 462 (561)
Q Consensus 386 ~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A 462 (561)
||+. +++....+.+.|+++.|+.+|.+++..++..|+++|.+++. +++....+.+.|+++.|+.++..+++.++..+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 434 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 434 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9996 66777888889999999999999999999999999999997 47889999999999999999999999999999
Q ss_pred HHHHHHhhccccc-----------hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcC
Q 008560 463 AKALSTLMLYAGN-----------RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVH 514 (561)
Q Consensus 463 ~~aL~~L~~~~~~-----------~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~ 514 (561)
..+|.+|....+. ...++.+.+|+..+..+..+.+. ..++.|..+|-.+-.
T Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~-~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN-EIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH-HHHHHHHHHHHHHCC
Confidence 9999999865433 23344667889999988866433 456778888887753
No 23
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.5e-31 Score=271.94 Aligned_cols=268 Identities=21% Similarity=0.210 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCc-hHHHHHh
Q 008560 207 EMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLES-----------GSGFAKERACVALQALSFSKE-NARAIGS 274 (561)
Q Consensus 207 ~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~ 274 (561)
..+..|+++|.+++.++++|..|++.| ++++|+.+|.. .++.++..|+++|.+|+..++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcC--CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455689999999999999999999999 99999999953 246789999999999998765 7777766
Q ss_pred c-CCHHHHHHHHhcCChHHHHHHHHHHHHhhCC--chhhHHHHhhhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCChH
Q 008560 275 R-GGISSLLEICQAGTPGSQAFAAGVLRNLAGF--SEIKENFIEENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDDES 350 (561)
Q Consensus 275 ~-g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~--~~~r~~i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~ 350 (561)
. |+|+.|+.+|+++++..++.|+++|+||+.. +++|..+++.|+|+.|+++| .+++..+++.|+.+|+||+..++.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 4 5599999999999999999999999999985 47899999999999999975 567789999999999999997777
Q ss_pred HHHHHH-HhCcHHHHHHhhhcCCCH---HHHHHHHHHHHHhhc----ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHH
Q 008560 351 LKLLIV-REGGIGSLKSYWDSVSAV---KSLEVAVELLSQLAS----CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAA 422 (561)
Q Consensus 351 ~r~~~~-~~g~i~~Lv~lL~~~~~~---~~~e~a~~aL~~L~~----~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~ 422 (561)
+|..++ ..|+++.|+++|...++. .+++.|+.+|+||+. +++++..+.+.|+++.|+++|++++..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 788887 789999999999876543 589999999999995 889999999999999999999999999999999
Q ss_pred HHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccch
Q 008560 423 RAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNR 476 (561)
Q Consensus 423 ~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~ 476 (561)
++|++|+. +++.++.+.+.|+++.|+.+++++++.+++.|+.+|.+|+.+.+++
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999995 7899999999999999999999999999999999999999876554
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=1.4e-29 Score=274.97 Aligned_cols=360 Identities=14% Similarity=0.154 Sum_probs=318.8
Q ss_pred HhHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcchH
Q 008560 150 AESRNLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV-DSSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~-~~~~~ 227 (561)
..++.|+..|+++ +++.+..|+..|.+++.++++++..+++.|+++.|+.+|.++++.+++.|+.+|.+|+.+ ++++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 4688899999987 899999999999999998888999999999999999999999999999999999999987 46788
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
.+...| ++++|+.+|.+.+..++..|+++|.+|+... .........|+++.|+.++.++++..+..|+++|.+|+..
T Consensus 210 ~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 210 YVLQCN--AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHTT--CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHcC--cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888899 9999999999999999999999999999875 4444555688999999999999999999999999999987
Q ss_pred c-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 307 S-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 307 ~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
. +....+++.|+++.|+.++.+++..++..|+.+|.+++.+++.....+.+.|+++.|+.+|.+++ ..++..|+.+|.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~ 366 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTIS 366 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 5 66778888999999999999999999999999999999998888888899999999999999874 699999999999
Q ss_pred Hhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CH--HHHHHHHhCCChHHHHHhccCCCHHHHH
Q 008560 386 QLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NS--KARKEMGECGCIGPLIKMLDGKAVEEKE 460 (561)
Q Consensus 386 ~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~--~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 460 (561)
+++. +++....+++.|+++.|+.+|.+++..++..|+++|.+++. ++ +..+.+.+.|+++.|+.++.+.++.++.
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 446 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 446 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 9996 77777888889999999999999999999999999999986 34 7888899999999999999999999999
Q ss_pred HHHHHHHHhhccccch-----------hhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 461 SAAKALSTLMLYAGNR-----------KILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 461 ~A~~aL~~L~~~~~~~-----------~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
.|+.+|.++....++. ...+.+.+|++.|..++.+... ..++.|..+|.++-
T Consensus 447 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~-~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 447 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND-KIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHC
Confidence 9999999998654332 1223566889999998876433 44667889988775
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=2e-29 Score=267.18 Aligned_cols=359 Identities=15% Similarity=0.150 Sum_probs=312.9
Q ss_pred HhHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-cchH
Q 008560 150 AESRNLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD-SSKH 227 (561)
Q Consensus 150 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~-~~~~ 227 (561)
..++.++..|+++ +++.+..|+..|.+++..++++...+++.|+++.|+.+|+++++.+++.|+.+|.+++.+. +.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 3678899999988 8899999999999999988888888889999999999999999999999999999999875 5778
Q ss_pred HHHHhchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 008560 228 VLIAEGLLLLNHLIRVLES-GSGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLA 304 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs 304 (561)
.+++.| +++.|+.+|++ .+..++..++++|.+++... .....+. .++++.|+.++.++++..+..++++|.+++
T Consensus 144 ~~~~~~--~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVLDCN--ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHTT--CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCC--CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 888899 99999999996 68999999999999999764 3333333 789999999999999999999999999999
Q ss_pred CCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHH
Q 008560 305 GFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVEL 383 (561)
Q Consensus 305 ~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~a 383 (561)
... +.+..+.+.|+++.|++++.+++..++..|+++|.+++.+++..++.+.+.|+++.|++++.+++ +.++..|+.+
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~ 299 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWT 299 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHH
Confidence 865 67778889999999999999999999999999999999998888888889999999999999854 6999999999
Q ss_pred HHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHH
Q 008560 384 LSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKE 460 (561)
Q Consensus 384 L~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 460 (561)
|.+++. +++....+.+.|+++.|+.+|.++++.++..|+++|.+++. +++..+.+.+.|+++.|+.++.++++.++.
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 379 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 999996 77788888889999999999999999999999999999986 577888888999999999999999999999
Q ss_pred HHHHHHHHhhccccchh-----------hHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 461 SAAKALSTLMLYAGNRK-----------ILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 461 ~A~~aL~~L~~~~~~~~-----------~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
.|..+|.+++...++.. ....+.+|++.|..++++.+ ...++.|+.+|.++-
T Consensus 380 ~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHEN-QEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHC
Confidence 99999999996544321 22345578888888776533 244566888877764
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.2e-30 Score=261.09 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCc-chHHHHH-h
Q 008560 166 SKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDS-----------SSLEMKEKTVASIARVSMVDS-SKHVLIA-E 232 (561)
Q Consensus 166 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~~~e~a~~~L~~La~~~~-~~~~i~~-~ 232 (561)
.+.+|+..|.+++.+ +++|..|++.|++++|+.+|.. .++.+|++|+.+|.+|+.+++ ++..+.. .
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 455788889898876 7899999999999999999952 237899999999999998765 6777755 5
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCCHHHHHHHH-hcCChHHHHHHHHHHHHhhC-Cch
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFS--KENARAIGSRGGISSLLEIC-QAGTPGSQAFAAGVLRNLAG-FSE 308 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~A~~aL~nLs~-~~~ 308 (561)
| ++++|+++|++++.++++.|+++|.+|+.. ++++..|.+.|+|+.|++++ +++++..++.|+++|+||+. .++
T Consensus 127 G--aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 127 G--CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp H--HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred C--cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 5 699999999999999999999999999985 46899999999999999975 56788999999999999999 558
Q ss_pred hhHHHH-hhhhHHHHHHHhhcCCH----HHHHHHHHHHHHhcC---CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHH
Q 008560 309 IKENFI-EENAVMVLLGLVASGTA----LAQENVFGCLCNLVS---DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVA 380 (561)
Q Consensus 309 ~r~~i~-~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~---~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a 380 (561)
++..++ ..|+++.|+++|.+++. .++++|+++|.||+. .++..+..+.+.|+++.|+.+|.+++ ..+++.|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHH
Confidence 999998 79999999999987654 489999999999997 67788999999999999999999866 4899999
Q ss_pred HHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 381 VELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 381 ~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
+++|+||+. +++.+..+.+.|+++.|+++|++++..+++.|+++|.+|+.+
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999994 899999999999999999999999999999999999999984
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=5.9e-25 Score=213.84 Aligned_cols=240 Identities=24% Similarity=0.261 Sum_probs=224.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC-chhhHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF-SEIKENF 313 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~-~~~r~~i 313 (561)
+++.|+.+|++++.+++..|+++|.+++... +++..+.+.|+++.|+.++.++++..+..|+++|.|++.. ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7999999999999999999999999999876 4888999999999999999999999999999999999998 6899999
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Chh
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLP 392 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~ 392 (561)
.+.|+++.|+.++.+++..++..|+++|.+++..++..+..+.+.|+++.|++++.+++ +.++..++.+|++|+. .+.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999888889999999999999999999766 5899999999999997 666
Q ss_pred hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 393 IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 393 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
.+..+.+.|+++.|+.++.+.++.++..|+.+|++++. +++.++.+.+.|+++.|+.+++++++.+++.|+.+|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 67888899999999999999999999999999999998 68889999999999999999999999999999999999997
Q ss_pred cccch
Q 008560 472 YAGNR 476 (561)
Q Consensus 472 ~~~~~ 476 (561)
+.++.
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 66543
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=6.6e-25 Score=213.53 Aligned_cols=236 Identities=24% Similarity=0.284 Sum_probs=221.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchH
Q 008560 192 GVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS-SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENA 269 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~-~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~ 269 (561)
|+|+.|+.+|.+++++++..|+.+|.+++..+. ++..+++.| +++.|+.+|++++..++..++++|.+++.+ ++++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAG--GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 679999999999999999999999999997764 888999999 999999999999999999999999999997 6788
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC-CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG-FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~-~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
..+.+.|+++.|+.++.++++..+..|+++|.||+. .++++..+.+.|+++.|++++.+++..++..++.+|.+++..+
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999994 5689999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008560 349 ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSM 427 (561)
Q Consensus 349 ~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~ 427 (561)
+..+..+.+.|+++.|+.++.+++ +.++..++.+|.+++. +++.+..+.+.|+++.|++++.++++.+++.|+++|.+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 888889999999999999999755 5999999999999997 77788889999999999999999999999999999999
Q ss_pred HcC
Q 008560 428 LGI 430 (561)
Q Consensus 428 L~~ 430 (561)
|+.
T Consensus 239 l~~ 241 (252)
T 4hxt_A 239 IKS 241 (252)
T ss_dssp HHH
T ss_pred HHc
Confidence 986
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=3.6e-25 Score=216.06 Aligned_cols=236 Identities=19% Similarity=0.261 Sum_probs=219.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcchHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~~~i 229 (561)
..+.++..|++++++.+..|+..|.+++..+++++..+.+.|+|+.|+.+|+++++.+++.|+.+|.+++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46788999999999999999999988887777888999999999999999999999999999999999997 56788999
Q ss_pred HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH-HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-
Q 008560 230 IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA-RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS- 307 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~- 307 (561)
++.| +++.|+.+|++++..++..|+++|.+|+.+++++ ..+.+.|+++.|+.++.++++..+..|+++|.||+..+
T Consensus 93 ~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 93 IDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999 9999999999999999999999999999998887 78889999999999999999999999999999999866
Q ss_pred hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 008560 308 EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQL 387 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L 387 (561)
+.+..+++.|+++.|++++.+++..++..|+.+|.+++..++..+..+.+.|+++.|++++.++++ .+++.|+.+|.+|
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS-HHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH-HHHHHHHHHHHHH
Confidence 777888899999999999999999999999999999999888889999999999999999998765 9999999999999
Q ss_pred hc
Q 008560 388 AS 389 (561)
Q Consensus 388 ~~ 389 (561)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.3e-24 Score=212.02 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=219.7
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHH-hcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCch
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARV-SMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSF-SKEN 268 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~L-a~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~ 268 (561)
....+.++.+|.+++++++..|+.+|.++ +.+++.+..+++.| +++.|+.+|++++..++..|+++|.+++. ++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 46789999999999999999999999664 45567788899999 99999999999999999999999999998 5678
Q ss_pred HHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhh-HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 008560 269 ARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIK-ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 347 (561)
+..+.+.|+++.|+.++.++++..+..|+++|.||+..++.+ ..+.+.|+++.|++++.+++..++..|+++|.+++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999888 8889999999999999999999999999999999998
Q ss_pred ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 008560 348 DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVS 426 (561)
Q Consensus 348 ~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 426 (561)
++..+..+.+.|+++.|++++.++ ++.+++.++.+|.+|+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888999999999999999886 46999999999999995 7788889999999999999999999999999999999
Q ss_pred HHcC
Q 008560 427 MLGI 430 (561)
Q Consensus 427 ~L~~ 430 (561)
+|+.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 9975
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.3e-24 Score=232.04 Aligned_cols=382 Identities=14% Similarity=0.084 Sum_probs=294.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.++.|.+.+++ .+.|..|+..|..+..........+ ....+.++++|..++.+.++.|+..|..++.+.+.|+.++
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~ 372 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR 372 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34445555544 3567778888888776443221111 1255667777777776779999999999999999999988
Q ss_pred H-hchhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCc---------------------------------------hH
Q 008560 231 A-EGLLLLNHLIRVLES-GSGFAKERACVALQALSFSKE---------------------------------------NA 269 (561)
Q Consensus 231 ~-~g~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~---------------------------------------~~ 269 (561)
+ .| ++..|+.++++ ++..+...++.+|.||+...+ ++
T Consensus 373 ~d~~--~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 373 SNES--FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HCHH--HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred hCHH--HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 7 56 79999999995 677789999999999987422 34
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHH---HHHHHHHHHHHhcC
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTAL---AQENVFGCLCNLVS 346 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~---~~~~a~~~L~~L~~ 346 (561)
..+.+.|+++.|+.++.++++..++.|+++|.||+.+.++|..+++.|+++.|+.++.+++.. .++.|+.+|.+|+.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 566778999999999999999999999999999999999999999999999999999988654 89999999999995
Q ss_pred C-ChHHHHHHHH----hCcHHHHHHhhhc--CCC-----------HHHHHHHHHHHHHhhcCh-----hhHHHHHhc-ch
Q 008560 347 D-DESLKLLIVR----EGGIGSLKSYWDS--VSA-----------VKSLEVAVELLSQLASCL-----PIAEVLVSD-GF 402 (561)
Q Consensus 347 ~-~~~~r~~~~~----~g~i~~Lv~lL~~--~~~-----------~~~~e~a~~aL~~L~~~~-----~~~~~l~~~-~~ 402 (561)
. ++.. ++. .|++++|+.+|.. ..+ ...+..|+.+|.||+..+ +.+..++++ |+
T Consensus 531 s~np~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 531 FTNPGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp TSCHHH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred cCCHHH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 4 3322 221 3899999999983 211 123779999999999865 457888886 99
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-HHHHhCC------ChHHHHHhccCCCHHHHHHHHHHHHHhh-cccc
Q 008560 403 VVRLVNVLNCGVLSVRIAAARAVSMLGINSKAR-KEMGECG------CIGPLIKMLDGKAVEEKESAAKALSTLM-LYAG 474 (561)
Q Consensus 403 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~v~~~A~~aL~~L~-~~~~ 474 (561)
++.|..+|.+++..++.+|+.+++||+.+++.. +.+.+.+ .++.|+.+++.++.++|+.|+++|.+++ .++.
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ 687 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence 999999999999999999999999999988764 3443322 3789999999999999999999999996 5677
Q ss_pred chhhHhhcCCCHHHHHHhccCC-ccchhhHHHHHHHHHhcC----Cc---hHHHHHHHcCchHHHHHhhccCccc
Q 008560 475 NRKILRKDERGIVTVVQLLDPL-IQNLDKKYPVAILAALVH----CR---KCRKQMVAAGACLHLRKLVEMDIEG 541 (561)
Q Consensus 475 ~~~~~~~~~~~i~~Lv~lL~~~-~~~~~k~~a~~~L~~La~----~~---~~r~~i~~~g~i~~L~~Ll~~~~~~ 541 (561)
..+.++...+|+..++.+|... +....+..++.++.||+. +. ...+..-.......|.+++..++.+
T Consensus 688 ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~ 762 (778)
T 3opb_A 688 IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSG 762 (778)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCch
Confidence 7788877768999999999662 233345568889999873 11 1222222555666777777665443
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.9e-24 Score=231.66 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=299.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch-HHHH
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK-HVLI 230 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~-~~i~ 230 (561)
++.+.+.+.++..+.-..++-.+.+.+..++.+|..| ....++.|..++++ ..++..|+-+|..+..+.... ..+
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si- 332 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL- 332 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH-
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH-
Confidence 3444555544433334455556767777777777776 56778999999976 478889999999988764321 111
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh-cCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCch
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS-RGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~ 308 (561)
.. ..+.+++.|.++..+.+..|+..|..|+.+++.++.++. .|.++.|++++++ ++......++.+|.||+...+
T Consensus 333 -~~--La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 333 -KQ--LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp -HH--HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred -HH--HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 23 677788888888777799999999999999999999988 5779999999995 677888999999999976321
Q ss_pred ---------------------------------------hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 309 ---------------------------------------IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 309 ---------------------------------------~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
++..+.+.|+++.|+.++.+++..+++.++++|.||+.. +
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~ 488 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-K 488 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-G
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-H
Confidence 456667999999999999999999999999999999865 6
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCH--HHHHHHHHHHHHhhcChhhHHHHHh---cchHHHHHHHhcC--CCH-------
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAV--KSLEVAVELLSQLASCLPIAEVLVS---DGFVVRLVNVLNC--GVL------- 415 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~--~~~e~a~~aL~~L~~~~~~~~~l~~---~~~i~~Lv~lL~~--~~~------- 415 (561)
.+|..+++.|++++|+.++.+.++. ..++.|+.+|.++....+....+-. .|+|++|+++|.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 6899999999999999999886542 3899999999999953322222211 3899999999983 211
Q ss_pred -----HHHHHHHHHHHHHcCCH-----HHHHHHHhC-CChHHHHHhccCCCHHHHHHHHHHHHHhhccccch-hhHhhcC
Q 008560 416 -----SVRIAAARAVSMLGINS-----KARKEMGEC-GCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNR-KILRKDE 483 (561)
Q Consensus 416 -----~~~~~A~~aL~~L~~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~ 483 (561)
.-+..|+.+|.||+..+ +.++.++++ |+++.|..++.+.+..+|+.|+++++||+.++..+ +.|...+
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 22678999999999853 568888886 99999999999999999999999999999987764 3443222
Q ss_pred -----CCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHHc-CchHHHHHhhcc--CccchH
Q 008560 484 -----RGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVAA-GACLHLRKLVEM--DIEGAN 543 (561)
Q Consensus 484 -----~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~~-g~i~~L~~Ll~~--~~~~ak 543 (561)
++++.|+.+++..+ ...++.|.++|.+++ .++...+.+++. ++++.|..+++. ++++..
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~ 716 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELR 716 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHH
T ss_pred CchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHH
Confidence 13778999997743 355778999999996 788888888887 899999999988 666653
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=199.21 Aligned_cols=195 Identities=21% Similarity=0.250 Sum_probs=174.6
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHHhc-CCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCc
Q 008560 192 GVVPVLVKLMDSSSL--EMKEKTVASIARVSM-VDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSF-SKE 267 (561)
Q Consensus 192 g~v~~Lv~lL~~~~~--~~~e~a~~~L~~La~-~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~ 267 (561)
-.+|.|+.+|.++++ +++..|+.+|.+|+. +++++..+.+.| ++++|+++|++++.++++.|+++|.+|+. +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G--~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR--GILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999987 899999999999995 567899999999 99999999999999999999999999998 468
Q ss_pred hHHHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh---c-------------CC
Q 008560 268 NARAIGSRGGISSLLEICQA-GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA---S-------------GT 330 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~---~-------------~~ 330 (561)
++..|.+.|+|++|+++|++ ++...++.|+.+||||+..+++|..+++ ++++.|++++. + .+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999999984 7899999999999999999999999987 46999998763 1 24
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHh-CcHHHHHHhhhcC-----CCHHHHHHHHHHHHHhhc
Q 008560 331 ALAQENVFGCLCNLVSDDESLKLLIVRE-GGIGSLKSYWDSV-----SAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 331 ~~~~~~a~~~L~~L~~~~~~~r~~~~~~-g~i~~Lv~lL~~~-----~~~~~~e~a~~aL~~L~~ 389 (561)
..++++|+.+|.||+..+++.|+.+.+. |+|+.|+.+++.+ .+.+.+|.|+.+|+||+.
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 5899999999999999988899999986 5689999999862 345899999999999985
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=2.5e-21 Score=183.42 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=182.8
Q ss_pred hcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH
Q 008560 274 SRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK 352 (561)
Q Consensus 274 ~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r 352 (561)
..|+.+.|+.++.+.++..+..|+++|.+++.. ++++..+++.|+++.|+++|.+++..++..|+++|.|++.+++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 357899999999999999999999999999954 5888999999999999999999999999999999999999998899
Q ss_pred HHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 353 LLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 353 ~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
..+.+.|+++.|+.++++++ +.+++.|+.+|.+++. +++.+..+.+.|+++.|+++|++++..+++.|+++|++++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999875 5999999999999996 777778888999999999999999999999999999999985
Q ss_pred -HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 432 -SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 432 -~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
++.+..+.+.|+++.|+.++.++++.+++.|+.+|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999975
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=192.63 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=173.8
Q ss_pred HhHHHHHHHhcCCCH--HHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcch
Q 008560 150 AESRNLITRLQIGSA--ESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSK 226 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~ 226 (561)
..++.+++.|+++++ +.+..|+..|..++.++++++..+.+.|+||+|+.+|+++++++|+.|+++|.+|+. +++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 357889999999887 788899999999999999999999999999999999999999999999999999997 47899
Q ss_pred HHHHHhchhhHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh---c-------------CC
Q 008560 227 HVLIAEGLLLLNHLIRVLE-SGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ---A-------------GT 289 (561)
Q Consensus 227 ~~i~~~g~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~---~-------------~~ 289 (561)
..|++.| ++++|+++|. +++.++++.|+.+|++|+..++++..|.+. ++++|+.++. + .+
T Consensus 88 ~~I~~~G--aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELN--GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcC--CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 9999999 9999999998 479999999999999999999999988874 7999988652 1 24
Q ss_pred hHHHHHHHHHHHHhhCCc-hhhHHHHhh-hhHHHHHHHhhcC------CHHHHHHHHHHHHHhcCC
Q 008560 290 PGSQAFAAGVLRNLAGFS-EIKENFIEE-NAVMVLLGLVASG------TALAQENVFGCLCNLVSD 347 (561)
Q Consensus 290 ~~~~~~A~~aL~nLs~~~-~~r~~i~~~-g~v~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~ 347 (561)
+.+++.|.++|+||+..+ ++|+.|.+. |+|+.|+.+++.. +...+++|+.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 588999999999999865 999999975 7889999999752 347899999999999874
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.8e-21 Score=184.39 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=181.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCc
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSM-VDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSF-SKE 267 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~-~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~ 267 (561)
..|+.+.|+.+|.+++++++..|+.+|.+++. +++.+..+++.| +++.|+.+|++++..++..|+++|.+++. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 46899999999999999999999999999994 567788999999 99999999999999999999999999996 457
Q ss_pred hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 268 NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 268 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
++..+.+.|+++.|+.++.++++..+..|+++|.|++... +.+..+++.|+++.|++++.+++..++..|+++|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999765 667788899999999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 347 DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 347 ~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++..+..+.+.|+++.|++++.+++ +.+++.|+.+|.+|+.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 98889999999999999999999754 5999999999999985
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=8.4e-20 Score=181.75 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHH-HhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhh
Q 008560 290 PGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLG-LVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYW 368 (561)
Q Consensus 290 ~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL 368 (561)
.+.+..|+..|.+++...++...++..|+++.|+. +|.+++..+++.|+++|.+++.+++..|..+++.|++++|+++|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678899999999998899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHH
Q 008560 369 DSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGP 446 (561)
Q Consensus 369 ~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~ 446 (561)
.++++..+++.|+++|.+++. ++...+.+.+.|+++.|+.+|++++..++..|+++|.+|+. +++.++.+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 976567999999999999997 77778889889999999999999999999999999999987 6889999999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 447 LIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 447 Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
|+.+|.++++.+++.|+.+|.+|+...
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999763
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=2.9e-19 Score=177.81 Aligned_cols=202 Identities=19% Similarity=0.216 Sum_probs=177.0
Q ss_pred HHhHHHHHHHhcCC------------CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHH-hhcCCCHHHHHHHHHH
Q 008560 149 RAESRNLITRLQIG------------SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVK-LMDSSSLEMKEKTVAS 215 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~------------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~~~e~a~~~ 215 (561)
...+++.+..|.++ +.+.|..|+..|..++.. .+|...+...|++++|+. +|+++++.+++.|+++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34566667777653 346788999999988864 458888889999999999 9999999999999999
Q ss_pred HHHHhcC-CcchHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHH
Q 008560 216 IARVSMV-DSSKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGS 292 (561)
Q Consensus 216 L~~La~~-~~~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~ 292 (561)
|.+++.+ +.++..+++.| ++++|+.+|+++ +..++..|+++|.+|+.+. +....+...|+++.|+.+++++++..
T Consensus 106 Lg~ia~~n~~~~~~vv~~g--~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLG--ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTT--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHhCCHHHHHHHHHCC--CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 9999976 46788899999 999999999975 8899999999999999864 56778888999999999999999999
Q ss_pred HHHHHHHHHHhhCC-chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHH
Q 008560 293 QAFAAGVLRNLAGF-SEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKL 353 (561)
Q Consensus 293 ~~~A~~aL~nLs~~-~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~ 353 (561)
+..|+++|.+|+.. ++.+..+++.|+++.|+.+|.+++..+++.++.+|.+|+.+.+....
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~ 245 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHH
Confidence 99999999999875 47889999999999999999999999999999999999998664443
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=6.1e-15 Score=156.99 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=257.2
Q ss_pred chHHHHHhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHh
Q 008560 144 KREAVRAESRNLITRLQI-GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVS 220 (561)
Q Consensus 144 ~~~~~~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La 220 (561)
+.....+.|+.|..++++ .-.+.|+.|+..|..++++ ++.. +..++++.|+..|+.. |.++...++.+|.++-
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 334556789999999975 4678999999999999764 4433 4578899999999764 6888889999998865
Q ss_pred cCCcc------------------hHHHH-HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-c-hHHHHHh-cCCH
Q 008560 221 MVDSS------------------KHVLI-AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-E-NARAIGS-RGGI 278 (561)
Q Consensus 221 ~~~~~------------------~~~i~-~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~-~~~~i~~-~g~i 278 (561)
..++. .+.+. +.+ .++.|+.+|++.+..+|.++..+|..|+.+. + .+..|.. .+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~--~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi 168 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQE--NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGV 168 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTH--HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCc--cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccH
Confidence 43211 12222 356 8999999999999999999999999998764 3 6788885 6999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCH----HHHHHHHHHHHHhcCCChHHHH
Q 008560 279 SSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTA----LAQENVFGCLCNLVSDDESLKL 353 (561)
Q Consensus 279 ~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~~r~ 353 (561)
+.|+.+|.+.....+..++..|.+|+.++ ++++.++-+|+++.|++++..+.. .+...++.+|.||...+..++.
T Consensus 169 ~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 169 SRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999988 555555678999999999986543 6889999999999999999999
Q ss_pred HHHHhCcHHHHHHhhhcCCCH-----HHHH---HHHHHHHHhhcC-------hhhHHHHHhcchHHHHHHHhcCC--CHH
Q 008560 354 LIVREGGIGSLKSYWDSVSAV-----KSLE---VAVELLSQLASC-------LPIAEVLVSDGFVVRLVNVLNCG--VLS 416 (561)
Q Consensus 354 ~~~~~g~i~~Lv~lL~~~~~~-----~~~e---~a~~aL~~L~~~-------~~~~~~l~~~~~i~~Lv~lL~~~--~~~ 416 (561)
.+.+.|+++.|..+++.+.+. .... .++.+++.|+.. +.++..+.+.|+++.|++++... +..
T Consensus 249 ~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~ 328 (651)
T 3grl_A 249 FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPAD 328 (651)
T ss_dssp HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHH
T ss_pred HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHH
Confidence 999999999999999753321 1222 367777777752 24577889999999999988765 578
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHhCC---------ChHHHHHhccC-CCHHHHHHHHHHHHHhhc-cccchhhHh
Q 008560 417 VRIAAARAVSMLGI-NSKARKEMGECG---------CIGPLIKMLDG-KAVEEKESAAKALSTLML-YAGNRKILR 480 (561)
Q Consensus 417 ~~~~A~~aL~~L~~-~~~~~~~i~~~g---------~i~~Lv~ll~~-~~~~v~~~A~~aL~~L~~-~~~~~~~~~ 480 (561)
++..|..++..+.. ++.++..+.+.. .+..|+.++.+ ....+|-.|+.++..... +...+..++
T Consensus 329 i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 329 ILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999987 678888887653 23334445554 457788888888887775 434444454
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=4.8e-13 Score=142.49 Aligned_cols=356 Identities=16% Similarity=0.161 Sum_probs=259.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--cchHHHHH-hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008560 189 VAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD--SSKHVLIA-EGLLLLNHLIRVLESGSGFAKERACVALQALSFS 265 (561)
Q Consensus 189 ~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~--~~~~~i~~-~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 265 (561)
.+.+.|+.|+.+|++.+..++..++..|..|.... ..++.|.. .+ +++.|+.+|++....+|..+..+|.+|+.+
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~--gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM--GVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTT--HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcc--cHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 45799999999999999999999999999998654 36777875 58 999999999999999999999999999998
Q ss_pred Cch-HHHHHhcCCHHHHHHHHhcCCh----HHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHH------H
Q 008560 266 KEN-ARAIGSRGGISSLLEICQAGTP----GSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVASGTAL------A 333 (561)
Q Consensus 266 ~~~-~~~i~~~g~i~~Lv~ll~~~~~----~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~------~ 333 (561)
... +..++-.|+++.|+.+++.+.. .+...|+..|.||...+ .|+..+.|.|.++.|..++..+++. .
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk 276 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK 276 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence 654 4455557999999999987543 66789999999999887 7999999999999999999754321 2
Q ss_pred HHH---HHHHHHHhcCC------ChHHHHHHHHhCcHHHHHHhhhcC-CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcc-
Q 008560 334 QEN---VFGCLCNLVSD------DESLKLLIVREGGIGSLKSYWDSV-SAVKSLEVAVELLSQLAS-CLPIAEVLVSDG- 401 (561)
Q Consensus 334 ~~~---a~~~L~~L~~~------~~~~r~~~~~~g~i~~Lv~lL~~~-~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~- 401 (561)
..+ ++.++.-+... ...++..+.+.|+++.|++++... .+..++..|+.+++.+.+ ++.+++.+.+..
T Consensus 277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v 356 (651)
T 3grl_A 277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356 (651)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence 233 56666666665 235788999999999999998864 356889999999999997 888888887642
Q ss_pred --------hHHHHHHHhcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHhC----------CCh---HHHHHhccCCCHHH
Q 008560 402 --------FVVRLVNVLNCG-VLSVRIAAARAVSMLGI-NSKARKEMGEC----------GCI---GPLIKMLDGKAVEE 458 (561)
Q Consensus 402 --------~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~-~~~~~~~i~~~----------g~i---~~Lv~ll~~~~~~v 458 (561)
.+..|+.++.+. ...+|-+|+.++..+.. +++.+..+... ..+ ..|..-+.+.++.-
T Consensus 357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~ 436 (651)
T 3grl_A 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLS 436 (651)
T ss_dssp SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHH
T ss_pred CCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHH
Confidence 233344445443 46889999999999887 56666666543 111 12344444555544
Q ss_pred HHHHHHHHHHhhccccchhhH-hh----cCCC------HHHHHHhccCCccchhhHHHHHHHHHhc----CCchHHHHHH
Q 008560 459 KESAAKALSTLMLYAGNRKIL-RK----DERG------IVTVVQLLDPLIQNLDKKYPVAILAALV----HCRKCRKQMV 523 (561)
Q Consensus 459 ~~~A~~aL~~L~~~~~~~~~~-~~----~~~~------i~~Lv~lL~~~~~~~~k~~a~~~L~~La----~~~~~r~~i~ 523 (561)
--.|+.+|.++..+++..|+. .+ ...| +..+..+|.... +.+-.++.|+-|+ +++..-+...
T Consensus 437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~---~~ri~vgyL~LL~~WL~e~p~AV~dFL 513 (651)
T 3grl_A 437 NWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGS---KIQTRVGLLMLLCTWLSNCPIAVTHFL 513 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTC---CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCC---chhHHHHHHHHHHHHHhCChHHHHHHH
Confidence 456888888888766655543 22 1111 444555664321 2234566666554 8999999988
Q ss_pred HcCc-hHHHHHhhccCccchHHHHHhh
Q 008560 524 AAGA-CLHLRKLVEMDIEGANKLLESL 549 (561)
Q Consensus 524 ~~g~-i~~L~~Ll~~~~~~akk~~~~l 549 (561)
+.|. ++.|...+..+..+...+++.|
T Consensus 514 ~~~s~l~~L~~~i~~~~~~~~~lvqGL 540 (651)
T 3grl_A 514 HNSANVPFLTGQIAENLGEEEQLVQGL 540 (651)
T ss_dssp HSTTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred cCCchHHHHHHHHHhccCcchHHHHHH
Confidence 8884 8888877643333345555554
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.50 E-value=1.2e-11 Score=122.11 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=197.3
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCch
Q 008560 189 VAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKEN 268 (561)
Q Consensus 189 ~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 268 (561)
.+.+.++.|+..|.++++.++..|+.+|..+. ..+ +++.|+.+|++.++.+|..|+++|..+...++.
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~--~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQD--AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHH--HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------Cch--HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 45789999999999999999999999999886 246 899999999999999999999999998754332
Q ss_pred HHHHHhcCCHHHHHH-HHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 008560 269 ARAIGSRGGISSLLE-ICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 269 ~~~i~~~g~i~~Lv~-ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 347 (561)
... .++.|.. ++.+.++.++..++.+|.++...... ....+++.|+.++.+++..++..|+.+|.++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 111 2333442 45678899999999999998643211 124578999999999999999999999998754
Q ss_pred ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008560 348 DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSM 427 (561)
Q Consensus 348 ~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~ 427 (561)
.+.++.|++++.+++ +.++..++.+|..+.... ...++.|+.++.+.++.++..|+.+|.+
T Consensus 158 ----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPN-GDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 257999999998755 589999999999985321 2467899999999999999999999998
Q ss_pred HcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHH
Q 008560 428 LGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVA 507 (561)
Q Consensus 428 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~ 507 (561)
+. ....++.|+.++.+++ ++..|..+|..+.. ...++.|.+++...........++.
T Consensus 219 ~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~ 275 (280)
T 1oyz_A 219 RK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAID 275 (280)
T ss_dssp TT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred hC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHH
Confidence 86 3457899999998644 88888898887743 2467888888866443333333444
Q ss_pred HH
Q 008560 508 IL 509 (561)
Q Consensus 508 ~L 509 (561)
+|
T Consensus 276 ~l 277 (280)
T 1oyz_A 276 KL 277 (280)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.43 E-value=1.7e-11 Score=133.61 Aligned_cols=368 Identities=11% Similarity=0.061 Sum_probs=258.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.++.+...++..+++.|..|+..|..++...... ......+|.+..++.++++.++..|+.+|..++..-.. ...
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~ 239 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDL 239 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 3444556667788999999999999887653321 12356788999999999999999999999988754221 122
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc--h
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS--E 308 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~--~ 308 (561)
... .++.+..++++.+..+|..++.+|..++..... .......++.++.++.+.++..+..|+.+|..++..- +
T Consensus 240 ~~~--~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 240 EAL--VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHH--THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHH--HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 345 788888899999999999999999998763211 1122356889999999999999999999999987643 2
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
.+....-...++.+..++.+.+..++..++.+|..++..-. ........++.+..++.+.+ +.++..++.+|..++
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~-~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDEC-PEVRLNIISNLDCVN 391 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSC-HHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHH
Confidence 22223345678889999999999999999999998874211 11122346778888887654 589999999999888
Q ss_pred cChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 008560 389 SCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKAL 466 (561)
Q Consensus 389 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL 466 (561)
..-.. +. ....+++.+..++.+.+..++..++.++..++. .++. .....++.+..++.+.+..+|+.|..+|
T Consensus 392 ~~~~~-~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l 465 (588)
T 1b3u_A 392 EVIGI-RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNL 465 (588)
T ss_dssp HHSCH-HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HhcCH-HH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 52111 11 123567888888888899999999999998874 1211 1113578888889988999999999999
Q ss_pred HHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCccchH
Q 008560 467 STLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 467 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
..++...+....+ ...++.|+.++... ....+..++.++..++.. +.........++.|.++++.+++..+
T Consensus 466 ~~l~~~~~~~~~~---~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~l~d~~~~Vr 536 (588)
T 1b3u_A 466 KKLVEKFGKEWAH---ATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEV--CGQDITTKHMLPTVLRMAGDPVANVR 536 (588)
T ss_dssp HHHHHHHCHHHHH---HHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred HHHHHHhCchhHH---HHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhhCCCCCchHH
Confidence 9998654432211 24667777776543 223455677777776532 11222445667778888776666554
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.42 E-value=1.7e-11 Score=120.92 Aligned_cols=253 Identities=13% Similarity=0.017 Sum_probs=196.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.+..++..|+.+++..|..|+..|..+. ..+.++.|+.+|.++++.++..|+.+|..+...+...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~---- 88 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---- 88 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH----
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc----
Confidence 5788999999999999999999987764 2356899999999999999999999999887543221
Q ss_pred HhchhhHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh
Q 008560 231 AEGLLLLNHLI-RVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI 309 (561)
Q Consensus 231 ~~g~~~i~~Lv-~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~ 309 (561)
.. .++.|. .++++.++.+|..++++|..+...... .....++.|+..+.+.++.++..|+.+|.++..
T Consensus 89 -~~--l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 89 -DN--VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -HH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -hH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 12 344444 346778999999999999998642110 112358899999999999999999999998753
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++++.|+.++.+++..++..++.+|.++...++ .+++.|++++.+++ +.++..++.+|+++..
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRKD 221 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSC-HHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999999865443 35678888887654 5899999999998862
Q ss_pred ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHH
Q 008560 390 CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDG-KAVEEKESAAKALS 467 (561)
Q Consensus 390 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~aL~ 467 (561)
...++.|+..+.+.+ ++..|+.+|..+.. ..+++.|..++.+ .++.+...+...|.
T Consensus 222 ----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 357899999997754 78889999988864 3568999999974 56667666666653
No 44
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.41 E-value=2.1e-11 Score=132.78 Aligned_cols=366 Identities=10% Similarity=0.049 Sum_probs=260.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.++.+...++.++...|..|+..|..++...+.. ......+|.+..++++++..+|..++.+|..++..-.. ...
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~ 278 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT 278 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc
Confidence 4555666677788888888888888877653321 12345788888999988999999999999998753211 123
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCch
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~ 308 (561)
... .++.++.++++.++.+|..|+.+|..++..- +.+........++.+..++.+.++..+..++.+|..++..-.
T Consensus 279 ~~~--l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 279 KTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHT--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred hhH--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 455 8999999999999999999999999987642 222112234567888899999999999999999988875321
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 309 IKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
. .......++.+..++.+++..++..++.+|..+...-.. .......++.+.+++.+.+ ..++..++.+|..++
T Consensus 357 ~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 357 K--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLA 430 (588)
T ss_dssp H--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHH
T ss_pred H--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 1 122345788899999988889999999988887653211 1122346777777776644 589999999999988
Q ss_pred c--ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHH
Q 008560 389 S--CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLDGKAVEEKESAAK 464 (561)
Q Consensus 389 ~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 464 (561)
. .++ .....+++.+...|.+.+..+++.|+.++..++.. ++ ......+|.|..++.+.+..+|..+..
T Consensus 431 ~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~ 502 (588)
T 1b3u_A 431 GQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLF 502 (588)
T ss_dssp HHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 5 221 11224678888899988999999999999999862 22 112346888888888889999999999
Q ss_pred HHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCchHHHHHHHcCchHHHHHhhccCccchH
Q 008560 465 ALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRKCRKQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 465 aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~~r~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
++..++..-+.. .+.. .-++.|+.++..... ..+..++.+|..+...-. .........+.|.++.+.++++.+
T Consensus 503 ~l~~l~~~~~~~-~~~~--~~~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~--~~~~~~~~~p~l~~l~~d~d~~vr 575 (588)
T 1b3u_A 503 CINVLSEVCGQD-ITTK--HMLPTVLRMAGDPVA-NVRFNVAKSLQKIGPILD--NSTLQSEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HHHHHHHHHHHH-HHHH--HTHHHHHHGGGCSCH-HHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHhcCHH-HHHH--HHHHHHHhhCCCCCc-hHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHcCCCchhHH
Confidence 999998643322 2322 477888888865433 356778899988873211 123345667778888766666544
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.41 E-value=7.2e-12 Score=143.31 Aligned_cols=347 Identities=12% Similarity=0.064 Sum_probs=242.0
Q ss_pred HHhHH-HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 149 RAESR-NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 149 ~~~v~-~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
...++ .++..|...+...|..++..+..+++.+... .-.+.++.|+..+.++++.+++.++.+|..+..+...
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~-- 161 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE-- 161 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH--
Confidence 33443 4566677778888999999998888764221 1247899999999999999999999999998754221
Q ss_pred HHH-------HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHH
Q 008560 228 VLI-------AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVL 300 (561)
Q Consensus 228 ~i~-------~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL 300 (561)
.+. -.. .++.+++.+++.+..+|..|+.+|.++.........-.-.+.++.|+.++.++++..+..|+++|
T Consensus 162 ~~~~~~~~~~~~~--il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 162 ILDSDVLDRPLNI--MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp HHHHCSSSSCHHH--HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HhchhhhcchHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 111 134 67888888888999999999999998876432211111134678888889999999999999999
Q ss_pred HHhhCCch-h-hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHH--HhCcHHHHHHhhh-------
Q 008560 301 RNLAGFSE-I-KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIV--REGGIGSLKSYWD------- 369 (561)
Q Consensus 301 ~nLs~~~~-~-r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~--~~g~i~~Lv~lL~------- 369 (561)
.+++.... . ...+ .+.++.++.++.+.++.++..|+.++..++.... .+..+. -...++.++..+.
T Consensus 240 ~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~ 316 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDII 316 (852)
T ss_dssp HHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHH
Confidence 99986542 1 2222 3578888899998888999999999999987542 222211 1134566666651
Q ss_pred ---cC-----------CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HH
Q 008560 370 ---SV-----------SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINS-KA 434 (561)
Q Consensus 370 ---~~-----------~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~~ 434 (561)
.+ .+..++..+..+|..++.... +.+. ..+++.+...+.+.++.+++.|+.+|.+++... +.
T Consensus 317 ~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 21 112468889999999986221 1111 246778888888889999999999999999742 21
Q ss_pred HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccc--hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 435 RKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGN--RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 435 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
... .-.+.++.|+.++.+.++.+|..|+.+|..++...+. ...+. ...++.|+..|.... ...+..|+.+|.++
T Consensus 394 ~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~-~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 394 MIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSN-KRVQEAACSAFATL 469 (852)
T ss_dssp HGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSS-HHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 111 1235689999999999999999999999999864321 11111 135677777775432 34567788888888
Q ss_pred c
Q 008560 513 V 513 (561)
Q Consensus 513 a 513 (561)
+
T Consensus 470 ~ 470 (852)
T 4fdd_A 470 E 470 (852)
T ss_dssp H
T ss_pred H
Confidence 6
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.38 E-value=7.7e-12 Score=143.04 Aligned_cols=347 Identities=14% Similarity=0.080 Sum_probs=233.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHH----hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAV----AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~----~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~ 226 (561)
.++.++..+.+++...|..++..|..++.+.+.....-. -.+.++.++.+++++++.+|..|+.+|..+.....
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-- 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT-- 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--
Confidence 577888899999998999999999988876443211000 12467778888888899999999999987764422
Q ss_pred HHHHH--hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 227 HVLIA--EGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 227 ~~i~~--~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
..+.. .. .++.+...+.+++.++|..++++|..++..... .+.. .+.++.++..+.+.++.++..|+..+.+
T Consensus 207 ~~~~~~~~~--~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 207 QALMLHIDS--FIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp HHHHTSHHH--HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 12221 35 888999999999999999999999999875321 1111 2467788888888889999999999999
Q ss_pred hhCCchhhHHHH--hhhhHHHHHHHhh-----------c-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 008560 303 LAGFSEIKENFI--EENAVMVLLGLVA-----------S-----------GTALAQENVFGCLCNLVSDDESLKLLIVRE 358 (561)
Q Consensus 303 Ls~~~~~r~~i~--~~g~v~~Lv~lL~-----------~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~ 358 (561)
++.....+..+. -...++.++..+. + ....++..|+.+|..++...+. .+. .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~ 358 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-P 358 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-H
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-H
Confidence 987654433221 2256777777762 2 1124678888888888753211 111 1
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh--cchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHH
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS--DGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKAR 435 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~ 435 (561)
..++.+...+.+. +...++.|+.+|++++..... .+.. ..+++.++..+.+.++.++..|++++.+++.. ....
T Consensus 359 ~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~--~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 359 HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQ--GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHH--HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 2455666666654 469999999999999973322 2211 36789999999999999999999999999852 1100
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccch-hhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 436 KEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNR-KILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 436 ~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
....-.+.++.|+..+.+.++.+|..|+.+|.+++...+.. ..+. ..-++.|+.++.... ......++.++.+++
T Consensus 436 ~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQ-HKNLLILYDAIGTLA 511 (852)
T ss_dssp TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 00001245788899898889999999999999998543321 1111 124555666665421 112223445555553
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.35 E-value=1.3e-10 Score=127.21 Aligned_cols=294 Identities=13% Similarity=0.093 Sum_probs=189.9
Q ss_pred HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcch
Q 008560 147 AVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSK 226 (561)
Q Consensus 147 ~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~ 226 (561)
-.+..++.+...+.+.++..|..|+..+..+...+++.. .+.+.++.|..+|.++++.++..|+.+|..++.++...
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 344456778888899999999999999999988766533 23578999999999999999999999999998764321
Q ss_pred -HHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 227 -HVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 227 -~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
..-...+ .+..|+..+...++-.+....++|..+...++.. ....++.+...+++.++.+...|++++.++..
T Consensus 195 ~~~~l~~~--~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 195 NLLDLNPQ--NINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CSCCCHHH--HHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred cchhccHH--HHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 1112345 6888888888888888988888888887543211 12356777777888899999999999999974
Q ss_pred ----CchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHh-hh-cCCCHHHHHH
Q 008560 306 ----FSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSY-WD-SVSAVKSLEV 379 (561)
Q Consensus 306 ----~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~l-L~-~~~~~~~~e~ 379 (561)
.++.-.. +-..+.+.|+.++. .+..++..++.+|..+....+. .+...++. +. ..++..++..
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~---------~~~~~~~~~~~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 269 LLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE---------ILKQEIKVFFVKYNDPIYVKLE 337 (591)
T ss_dssp SCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS---------TTTTCTTTTSCCTTSCHHHHHH
T ss_pred ccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH---------HHHHHHHhheeccCChHHHHHH
Confidence 2233222 23456677887765 6789999999999988753321 11100110 11 0122456666
Q ss_pred HHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHH
Q 008560 380 AVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEE 458 (561)
Q Consensus 380 a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v 458 (561)
++.+|..++... +.+ .+++.|.+++.+.+.+++..++.++..++.. +...+ .+++.|+.++...+..+
T Consensus 338 al~~L~~l~~~~-nv~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v 406 (591)
T 2vgl_B 338 KLDIMIRLASQA-NIA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYV 406 (591)
T ss_dssp HHHHHHHTCCSS-THH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHCChh-hHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHH
Confidence 666666665422 111 2344555555555666666666666666642 22211 13455556555555555
Q ss_pred HHHHHHHHHHhhc
Q 008560 459 KESAAKALSTLML 471 (561)
Q Consensus 459 ~~~A~~aL~~L~~ 471 (561)
+..+..++..+..
T Consensus 407 ~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 407 VQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.27 E-value=3.1e-10 Score=124.23 Aligned_cols=355 Identities=12% Similarity=0.102 Sum_probs=242.5
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHV 228 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~ 228 (561)
.-.+..+...|++.++..|..|+..|.++. +++.. ...++.+..++.++++.+|..|+.++..+..... +.
T Consensus 85 ~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~ 155 (591)
T 2vgl_B 85 IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QM 155 (591)
T ss_dssp HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hh
Confidence 334566777788889999999998887764 33322 2346789999999999999999999999976422 12
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
+.+.+ .++.+..+|.+.++.++..|+.+|..++.... ....-...+.+..|+..+.+.++..+...+++|.+++..+
T Consensus 156 ~~~~~--~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 156 VEDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHHHH--HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred ccccc--HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 33467 89999999999999999999999999987643 2111111345778888888889999988899998887554
Q ss_pred hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHH
Q 008560 308 EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSD---DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELL 384 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL 384 (561)
+.- ....++.+..++++.+..++..|+.++..+... ++..-+.+ -....+.|+.++. +++.++..++.+|
T Consensus 234 ~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~--~d~~vr~~aL~~l 306 (591)
T 2vgl_B 234 DRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS--GEPEVQYVALRNI 306 (591)
T ss_dssp HHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred hHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 211 235677888888888889999999999999742 22222222 2345677777664 4579999999999
Q ss_pred HHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 008560 385 SQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAA 463 (561)
Q Consensus 385 ~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~ 463 (561)
..++. +++.... .+..+... .+.+..++..|+.+|.+++.... .+. .++.|...+.+.+..+|..++
T Consensus 307 ~~i~~~~p~~~~~-----~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~n-v~~-----iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 307 NLIVQKRPEILKQ-----EIKVFFVK-YNDPIYVKLEKLDIMIRLASQAN-IAQ-----VLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHHHCCSTTTT-----CTTTTSCC-TTSCHHHHHHHHHHHHHTCCSST-HHH-----HHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHhChHHHHH-----HHHhheec-cCChHHHHHHHHHHHHHHCChhh-HHH-----HHHHHHHHHhcCCHHHHHHHH
Confidence 99986 4432111 11111111 23458899999999999986433 222 366788888888999999999
Q ss_pred HHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHHHHcCchHHHHHhhcc-Cccc
Q 008560 464 KALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQMVAAGACLHLRKLVEM-DIEG 541 (561)
Q Consensus 464 ~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i~~~g~i~~L~~Ll~~-~~~~ 541 (561)
.++..++...+.. ....++.|+++|...++.. ...++.++..+. ..++.+ ..++..|.+.++. +.+.
T Consensus 375 ~aI~~la~~~~~~-----~~~~v~~Ll~ll~~~~~~v-~~e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~~~~~~ 443 (591)
T 2vgl_B 375 RAIGRCAIKVEQS-----AERCVSTLLDLIQTKVNYV-VQEAIVVIRDIFRKYPNKY-----ESIIATLCENLDSLDEPD 443 (591)
T ss_dssp HHHHHHHTTCHHH-----HHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTTCCSHH
T ss_pred HHHHHHHHhChhH-----HHHHHHHHHHHHcccchHH-HHHHHHHHHHHHHHCcchH-----HHHHHHHHHHHHhccCHH
Confidence 9999998653311 1236778888886654433 333555666654 233322 3455666666642 3344
Q ss_pred hHH
Q 008560 542 ANK 544 (561)
Q Consensus 542 akk 544 (561)
++.
T Consensus 444 ~~~ 446 (591)
T 2vgl_B 444 ARA 446 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.26 E-value=4.1e-10 Score=105.99 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=159.3
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
..+.++.|+.+|+++++.++..|+.+|..+.. .+ +++.|+..|++++..+|..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~--~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GG--GHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------cc--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 35789999999999999999999999988753 46 89999999999999999999999988742
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 349 (561)
.+.++.|+.++.+.++.++..|+.+|.++.. .++++.|++++.+++..++..|+.+|.++..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3578999999999999999999999998853 4688999999999999999999999999843
Q ss_pred HHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 350 SLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 350 ~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
...++.|.+++++.+ +.++..++.+|..+.. ...++.|..++.+.++.++..|..+|.++.
T Consensus 142 --------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDED-GWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 246888999996654 6899999999999853 246788889999999999999999999988
Q ss_pred CC
Q 008560 430 IN 431 (561)
Q Consensus 430 ~~ 431 (561)
.+
T Consensus 203 ~~ 204 (211)
T 3ltm_A 203 SF 204 (211)
T ss_dssp --
T ss_pred CC
Confidence 64
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.24 E-value=5.2e-10 Score=105.27 Aligned_cols=188 Identities=17% Similarity=0.128 Sum_probs=157.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHh
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIE 315 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~ 315 (561)
.++.|+..|++++..+|..|+..|..+.. .++++.|+.++.+.++..+..|+.+|.++..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 89999999999999999999999987643 3579999999999999999999999998753
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHH
Q 008560 316 ENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAE 395 (561)
Q Consensus 316 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~ 395 (561)
.++++.|++++.+++..++..++.+|..+.. ...++.|++++.+++ +.++..++.+|..+..
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED-WFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC------
Confidence 4688999999999999999999999999854 246889999987654 5899999999999853
Q ss_pred HHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccc
Q 008560 396 VLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGN 475 (561)
Q Consensus 396 ~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~ 475 (561)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|..+.....+
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 2468899999999999999999999999853 23577888889889999999999999988765443
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=8.3e-10 Score=103.01 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=158.8
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHH
Q 008560 191 QGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 191 ~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
.+..+.++.+|+++++.++..|+.+|..+.. .+ +++.|+..|+++++.+|..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~--~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hh--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 4678899999999999999999999987753 36 89999999999999999999999987742
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChH
Q 008560 271 AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDES 350 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 350 (561)
..+++.|+.++.+.++..+..|+.+|.++.. ..+++.|+.++.+++..++..|+.+|.++..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 3588999999999999999999999999853
Q ss_pred HHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 351 LKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 351 ~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
...++.|..++.+.+ +.++..++.+|..+.. ...++.|..++.+.++.++..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDED-GWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 357888999998754 6899999999999842 246788889999899999999999998764
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.20 E-value=7.5e-09 Score=113.76 Aligned_cols=329 Identities=14% Similarity=0.020 Sum_probs=230.4
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
+...+.++-+.+++++...|.+++.+|..+..-..+. ..+....++++.+++...+.-+.-++..++..+....
T Consensus 32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~ 105 (618)
T 1w63_A 32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH 105 (618)
T ss_dssp HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence 3456777778888877778888888887765433221 2355667788888888887777777777765432111
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
. - ++..|.+-|+++++.+|..|.++|.++... + +. ...++.+...+.+.++.+++.|+.++.++....
T Consensus 106 ~----l--~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 106 L----L--MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-E----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp H----H--HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-H----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred H----H--HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-H----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 1 2 778888899999999999999999999732 2 22 236788889999999999999999999998643
Q ss_pred -hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc--------------CC
Q 008560 308 -EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS--------------VS 372 (561)
Q Consensus 308 -~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~--------------~~ 372 (561)
+.. .+.++.+.+++.+.+..++..|+.+|..++..+++....+ ...++.++++|.. ..
T Consensus 174 p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 174 PELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp GGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred hHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 322 2677888889999999999999999999998765432222 2678888887764 23
Q ss_pred CHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChH
Q 008560 373 AVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLN------CGVLSVRIAAARAVSMLGINSKARKEMGECGCIG 445 (561)
Q Consensus 373 ~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~------~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~ 445 (561)
++-.+...+.+|..++. .++..+ .+++.|..++. +.+..+...|+.++..+..++..+. .++.
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~ 316 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAIN 316 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHH
T ss_pred CChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHH
Confidence 56888899999999987 333221 23344444432 2234777788888888765544332 3467
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCch
Q 008560 446 PLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRK 517 (561)
Q Consensus 446 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~ 517 (561)
.|..++.++++.+|..|..+|..+....+. +++. ....++.+|...+. ..|+.++.+|..++....
T Consensus 317 ~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~-~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 317 ILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDV-SIKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCH-HHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCCh-hHHHHHHHHHHHHccccc
Confidence 888888888888888888888888764332 2232 55667777765433 456778888888875433
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=1.1e-09 Score=102.09 Aligned_cols=183 Identities=17% Similarity=0.126 Sum_probs=156.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHh
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIE 315 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~ 315 (561)
..+.++..|+++++.+|..|+.+|..+.. .+.++.|+..+.+.++..+..|+.+|.++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 78999999999999999999999987643 3578999999999999999999999988743
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHH
Q 008560 316 ENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAE 395 (561)
Q Consensus 316 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~ 395 (561)
..+++.|+.++.+.+..++..|+.+|.++.. ...++.|++++.+. ++.++..++.+|..+..
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------ 136 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD------ 136 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC------
Confidence 3688999999999999999999999999754 24688899998765 46899999999998853
Q ss_pred HHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 396 VLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 396 ~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|..+|..+.
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999853 235788888888899999999999998764
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.15 E-value=1.5e-08 Score=111.30 Aligned_cols=308 Identities=14% Similarity=0.110 Sum_probs=190.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
...+.++.+.+.+.+.|.-.--.+..++.++++... -.+..|.+-|.++++.++..|+.+|+++... .+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EM- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HH-
Confidence 344455666677777776666666666665544222 2356677777778888888888888888632 12
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-h
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-E 308 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~ 308 (561)
.+. .++.+.+.|.+.++.+|..|+.++.++... ++.. .+.++.+..++.+.++.++..|+.+|..++... +
T Consensus 140 ~~~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 140 CRD--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 234 677888888888888888888888888653 2221 145666677777778888888888888887654 2
Q ss_pred hhHHHHhhhhHHHHHHHhhc---------------CCHHHHHHHHHHHHHhcCCChHHHHHHH-----------------
Q 008560 309 IKENFIEENAVMVLLGLVAS---------------GTALAQENVFGCLCNLVSDDESLKLLIV----------------- 356 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv~lL~~---------------~~~~~~~~a~~~L~~L~~~~~~~r~~~~----------------- 356 (561)
....+ ...++.++++|.+ .++-.+...+.+|..++..++.....+.
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 11111 2455666665542 2445566666666666655433211100
Q ss_pred --------------------HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHH
Q 008560 357 --------------------REGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLS 416 (561)
Q Consensus 357 --------------------~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 416 (561)
...+++.|.+++.+.+ +.++..++.+|..++.... .++ ......++..+.+.+..
T Consensus 291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d-~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNND-KNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSS-TTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChh
Confidence 0124556666665543 3677777777777765211 111 13456777777877888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc-ccchhhHhhcCCCHHHHHHhccC
Q 008560 417 VRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY-AGNRKILRKDERGIVTVVQLLDP 495 (561)
Q Consensus 417 ~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~ 495 (561)
++..|..+|..++...... .+ ++.|...+.+.+.+++..+..++..++.. .++.. ..++.++++|..
T Consensus 366 Ir~~alelL~~l~~~~nv~-~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~------~~v~~ll~lL~~ 433 (618)
T 1w63_A 366 IKRRAMELSFALVNGNNIR-GM-----MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR------WHIDTIMRVLTT 433 (618)
T ss_dssp HHHHHHHHHHHHCCSSSTH-HH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHH-HH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH------HHHHHHHHHHHh
Confidence 8888888888888643322 22 36667777777888888888888888853 22211 134556666643
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.05 E-value=9.9e-09 Score=107.98 Aligned_cols=368 Identities=9% Similarity=-0.011 Sum_probs=238.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcc-h-H
Q 008560 152 SRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMVDSS-K-H 227 (561)
Q Consensus 152 v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~~~-~-~ 227 (561)
+..++..+.+++.+.|.+|-..|..+...+ ..+++..|..++.+. ++.+|..|+..|.++...... . .
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456777777888889999988887754321 245677788888765 588999999999998643210 0 0
Q ss_pred -------HH---HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcC--ChHHH
Q 008560 228 -------VL---IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAG--TPGSQ 293 (561)
Q Consensus 228 -------~i---~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~--~~~~~ 293 (561)
.+ .... .-..|+..|.+.+..+ ..++.++..++... +..| .+.++.|+..+.++ ++..+
T Consensus 75 ~~~~~~~~l~~~~~~~--ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w----~~ll~~L~~~l~~~~~~~~~r 147 (462)
T 1ibr_B 75 QYQQRWLAIDANARRE--VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW----PELIPQLVANVTNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHTSCHHHHHH--HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC----TTHHHHHHHHHHCTTCCHHHH
T ss_pred HHHhhhhcCCHHHHHH--HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc----HHHHHHHHHHhccCCCCHHHH
Confidence 00 1122 4455777888877777 88888888887542 1111 46789999999988 88999
Q ss_pred HHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCChHHH-HHHHHhCcHHHHHHhh
Q 008560 294 AFAAGVLRNLAGFS--EIKENFIEENAVMVLLGLVASG--TALAQENVFGCLCNLVSDDESLK-LLIVREGGIGSLKSYW 368 (561)
Q Consensus 294 ~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~r-~~~~~~g~i~~Lv~lL 368 (561)
..|+.+|..++... +.-... -...++.++..+.+. +..++..|+.++.++...-+..- ......-.++.+...+
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 99999999998532 211111 134788889999887 67899999999999765322110 0011111345555555
Q ss_pred hcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHh-------
Q 008560 369 DSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGE------- 440 (561)
Q Consensus 369 ~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~------- 440 (561)
.+ .+..++..++.+|..++. ++..........+++.++..+.+.++.++..|...+..++..........+
T Consensus 227 ~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 227 QC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TC-SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 44 456899999999999985 433211111115677777888888899999999999888753211111100
Q ss_pred --------------CCChHHHHHhccC-------CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccc
Q 008560 441 --------------CGCIGPLIKMLDG-------KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQN 499 (561)
Q Consensus 441 --------------~g~i~~Lv~ll~~-------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 499 (561)
...+|.++..+.. .+..+|..|..+|..|+...+. .+.. ..++.+.+.|.+. ..
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~--~~~~~l~~~l~~~-~~ 380 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HVLPFIKEHIKNP-DW 380 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH--HHHHHHHHHTTCS-SH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHH--HHHHHHHHHhcCC-Ch
Confidence 1246666666642 2356899999999999865542 2222 2456666777653 23
Q ss_pred hhhHHHHHHHHHhcCCch---HHHHHHHcCchHHHHHhhccCccchH
Q 008560 500 LDKKYPVAILAALVHCRK---CRKQMVAAGACLHLRKLVEMDIEGAN 543 (561)
Q Consensus 500 ~~k~~a~~~L~~La~~~~---~r~~i~~~g~i~~L~~Ll~~~~~~ak 543 (561)
..+..++.++..++.... .+..+ ...++.|.+++..+.+..+
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHH
Confidence 456678899999984321 11122 5678888888877666543
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.99 E-value=2.3e-08 Score=105.08 Aligned_cols=349 Identities=10% Similarity=0.036 Sum_probs=220.7
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhH--------HH---HhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008560 153 RNLITRLQIG--SAESKNSAMDSLLGLLQEDDKNVV--------IA---VAQGVVPVLVKLMDSSSLEMKEKTVASIARV 219 (561)
Q Consensus 153 ~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~--------~i---~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~L 219 (561)
..|+..+..+ +...|..|+..|.++...+..... .+ .....-..|+..|.+.++.+ ..++.++..+
T Consensus 38 ~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~i 116 (462)
T 1ibr_B 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGI 116 (462)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHH
Confidence 3445555443 567777788878777654321110 00 01233445777777777677 7888888888
Q ss_pred hcCCcchHHHHHhchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCC--chHHHHHhcCCHHHHHHHHhcC--ChHHH
Q 008560 220 SMVDSSKHVLIAEGLLLLNHLIRVLESG--SGFAKERACVALQALSFSK--ENARAIGSRGGISSLLEICQAG--TPGSQ 293 (561)
Q Consensus 220 a~~~~~~~~i~~~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~ll~~~--~~~~~ 293 (561)
+..+..... -.+ .++.|+..+.++ +..+++.++.+|..++..- +.-.... ...++.++..+.+. ++.++
T Consensus 117 a~~~~~~~~--w~~--ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 117 ACAEIPVNQ--WPE--LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHGGGTC--CTT--HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHhccccc--cHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHH
Confidence 754311100 145 899999999998 8999999999999998632 1111111 23677888888887 68899
Q ss_pred HHHHHHHHHhhCCch-hh-HHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC
Q 008560 294 AFAAGVLRNLAGFSE-IK-ENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV 371 (561)
Q Consensus 294 ~~A~~aL~nLs~~~~-~r-~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~ 371 (561)
..|+.++.++...-+ +- ......-.++.+.+.+.+.+..++..++.+|..++...+..-...+..+.++.++..+.+.
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 271 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999764321 11 1111122467777777888889999999999998864432100011115566666666554
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHH------------------HHh---cchHHHHHHHhcCC-------CHHHHHHHHH
Q 008560 372 SAVKSLEVAVELLSQLASCLPIAEV------------------LVS---DGFVVRLVNVLNCG-------VLSVRIAAAR 423 (561)
Q Consensus 372 ~~~~~~e~a~~aL~~L~~~~~~~~~------------------l~~---~~~i~~Lv~lL~~~-------~~~~~~~A~~ 423 (561)
++.++..++..+..++........ +.+ ...++.++..+... +..++..|+.
T Consensus 272 -~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 272 -IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 458999999999988864311111 111 23456666666432 3478889999
Q ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHh-hcCCCHHHHHHhccCCccchhh
Q 008560 424 AVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILR-KDERGIVTVVQLLDPLIQNLDK 502 (561)
Q Consensus 424 aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~-~~~~~i~~Lv~lL~~~~~~~~k 502 (561)
+|..++..-. +.+. ..+++.+...+.+.+..+|+.|..+|..++..... +.+. .-...++.++.+|..... ..+
T Consensus 351 ~L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~l~~~~~~l~~~l~d~~~-~Vr 425 (462)
T 1ibr_B 351 CLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-SQLKPLVIQAMPTLIELMKDPSV-VVR 425 (462)
T ss_dssp HHHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT-TTTCTTTTTHHHHHHHGGGCSCH-HHH
T ss_pred HHHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence 9999885211 1111 13467788888889999999999999999964321 1110 113467778888865433 456
Q ss_pred HHHHHHHHHhc
Q 008560 503 KYPVAILAALV 513 (561)
Q Consensus 503 ~~a~~~L~~La 513 (561)
..|+.+|..++
T Consensus 426 ~~a~~~l~~~~ 436 (462)
T 1ibr_B 426 DTAAWTVGRIC 436 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888888886
No 57
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=5.3e-09 Score=116.24 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHH-HHhhcCCHHHHHHHHHHHHHhcCC-ChHHH
Q 008560 275 RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLL-GLVASGTALAQENVFGCLCNLVSD-DESLK 352 (561)
Q Consensus 275 ~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r 352 (561)
...+.++++.|++.++..+..|+.+|.||+.+++.+..+..+|+|..++ .+|.+.+.+++..|+++|.||+.. +.+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3467778899999999999999999999999889999999999987754 578888899999999999999974 46788
Q ss_pred HHHHHhCcHHHHHHhhhcCC-------------C-------HHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhc
Q 008560 353 LLIVREGGIGSLKSYWDSVS-------------A-------VKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLN 411 (561)
Q Consensus 353 ~~~~~~g~i~~Lv~lL~~~~-------------~-------~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~ 411 (561)
..+++.|++++|+.++.... . ....+.++.+|++||. +.+....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999985410 0 1245678899999996 6677778888899999999874
Q ss_pred CC---CHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhcc--CCCHHHHHHHHHHHHHhh
Q 008560 412 CG---VLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLD--GKAVEEKESAAKALSTLM 470 (561)
Q Consensus 412 ~~---~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~A~~aL~~L~ 470 (561)
+. +.+++..|+.+|+.|+. +++..+.+.+.|....+..++. ..+...+..++..|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 32 46899999999999998 5788888888775433333322 233335677888998875
No 58
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.96 E-value=4.9e-09 Score=116.50 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=155.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHH-HHhcCChHHHHHHHHHHHHhhCC--chhhHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLE-ICQAGTPGSQAFAAGVLRNLAGF--SEIKEN 312 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~A~~aL~nLs~~--~~~r~~ 312 (561)
.+.|+++.|++++++.|..||++|.+|+.++.++..+...|+|..++. ++.+.+..++..|+++|+||+.. .+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 677888999999999999999999999998888888888999988665 68888999999999999999965 488999
Q ss_pred HHhhhhHHHHHHHhhcCC---------------------HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-
Q 008560 313 FIEENAVMVLLGLVASGT---------------------ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS- 370 (561)
Q Consensus 313 i~~~g~v~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~- 370 (561)
+++.|+++.|..++.... ..+.++++.+|.+||.+++.....+...++++.|+..|..
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999985311 1245678899999999888888888899999999998854
Q ss_pred -CCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcch---HHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 008560 371 -VSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGF---VVRLVNVLNCGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 371 -~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~---i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 429 (561)
..+.+++..++.+|..++. +++..+.+.+.+. ...+..+..+ +...+..++.+|+|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 2346899999999999997 7777777877653 3344333333 3344667788888874
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.95 E-value=5.7e-07 Score=102.32 Aligned_cols=347 Identities=10% Similarity=0.038 Sum_probs=224.4
Q ss_pred HhHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHH--HhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcC-C
Q 008560 150 AESRNLITRLQIG-SAESKNSAMDSLLGLLQEDDKNVVIA--VAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMV-D 223 (561)
Q Consensus 150 ~~v~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~~~~i--~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~-~ 223 (561)
..++.++..++++ ++..+..++..+..++.+-....+.+ .....++.+...+.++ ++.++..|+.++..+... +
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888 88899999998888876422110000 0123566667777776 789999999999887532 1
Q ss_pred cc-hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc--hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHH
Q 008560 224 SS-KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE--NARAIGSRGGISSLLEICQAGTPGSQAFAAGVL 300 (561)
Q Consensus 224 ~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL 300 (561)
.+ ........ .++.+...+.+++.++|..++.+|..+..... ....+ ....++.+...+.+.++..+..|+..+
T Consensus 214 ~~~~~~~~~~~--ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 214 NNMEREGERNY--LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp HHHTSHHHHHH--HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHccChhHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11 00111233 67777788888899999999999999876421 11111 114566677777788889999999999
Q ss_pred HHhhCCchhh--------------HHHH---hhhhHHHHHHHhhcC-------CHHHHHHHHHHHHHhcCCChHHHHHHH
Q 008560 301 RNLAGFSEIK--------------ENFI---EENAVMVLLGLVASG-------TALAQENVFGCLCNLVSDDESLKLLIV 356 (561)
Q Consensus 301 ~nLs~~~~~r--------------~~i~---~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~r~~~~ 356 (561)
..++...... ..+. -...++.++..+... +..++..+..+|..++..... .+.
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~ 367 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH
Confidence 8887643110 0011 145778888888642 236888899999888753210 010
Q ss_pred HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh--hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC---
Q 008560 357 REGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCL--PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--- 431 (561)
Q Consensus 357 ~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--- 431 (561)
...++.+...+.+. +...++.++.+++.++... ........ .+++.++..+.+.++.++..+++++.+++..
T Consensus 368 -~~l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 368 -EPVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp -HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 12344444555544 4589999999999999632 32222222 5788888999888999999999999999852
Q ss_pred ----HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcccc-----chhhHhhcCCCHHHHHHhccCCcc-chh
Q 008560 432 ----SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAG-----NRKILRKDERGIVTVVQLLDPLIQ-NLD 501 (561)
Q Consensus 432 ----~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~-----~~~~~~~~~~~i~~Lv~lL~~~~~-~~~ 501 (561)
..+.. ..++.|+..+.+. +.++..|+.+|.+++...+ .-..+.. .-++.|++++..... ...
T Consensus 445 ~~~~~~~~~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~v 516 (861)
T 2bpt_A 445 SIDPQQHLP-----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNA 516 (861)
T ss_dssp GSCTTTTHH-----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGH
T ss_pred hcCCHHHHH-----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH--HHHHHHHHHHhCcCcchHH
Confidence 11222 2367788888765 8999999999999985422 1111111 235667777764321 234
Q ss_pred hHHHHHHHHHhc
Q 008560 502 KKYPVAILAALV 513 (561)
Q Consensus 502 k~~a~~~L~~La 513 (561)
+..++.++..++
T Consensus 517 r~~a~~al~~l~ 528 (861)
T 2bpt_A 517 RASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777777775
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.92 E-value=1.6e-07 Score=106.97 Aligned_cols=344 Identities=13% Similarity=0.071 Sum_probs=227.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccC-ch-hhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC--Ccch-
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQED-DK-NVVIAVAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMV--DSSK- 226 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~-~~~~i~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~--~~~~- 226 (561)
..++..|..++...|..++..+..++..+ +. .+ ...++.|+..+.++ ++.+++.++.++..+... ++.+
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w-----~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 172 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA 172 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhH
Confidence 35677788888888888888888877643 21 11 24678889999888 899999999999998753 2211
Q ss_pred -HHHHHhchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCC-CchH-HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHH
Q 008560 227 -HVLIAEGLLLLNHLIRVLESG--SGFAKERACVALQALSFS-KENA-RAIGSRGGISSLLEICQAGTPGSQAFAAGVLR 301 (561)
Q Consensus 227 -~~i~~~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~ 301 (561)
.. .... .++.+...+.+. +..+|..|+.++.++... .++- ........++.|...+.+.++..+..++.+|.
T Consensus 173 ~~~-~~~~--ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~ 249 (861)
T 2bpt_A 173 LVS-SSNN--ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249 (861)
T ss_dssp TGG-GHHH--HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHH-HHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 1133 677778888887 899999999999987532 1110 00001124666777788888999999999999
Q ss_pred HhhCCc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHH--------------HH--HHhCcHHHH
Q 008560 302 NLAGFS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKL--------------LI--VREGGIGSL 364 (561)
Q Consensus 302 nLs~~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~--------------~~--~~~g~i~~L 364 (561)
.++... +.-........++.+...+.+.+..++..++.++..++........ .+ .-...++.+
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 329 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL 329 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 887543 2111122225677777788888889999999999988754211000 00 113467777
Q ss_pred HHhhhcC------CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 008560 365 KSYWDSV------SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARK 436 (561)
Q Consensus 365 v~lL~~~------~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~ 436 (561)
+..+... ++..++..+..+|..++..-. +.+. ..+++.+.+.+.+.+...++.|+.++..++.. ++...
T Consensus 330 l~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 406 (861)
T 2bpt_A 330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406 (861)
T ss_dssp HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 7777642 223688899999999886211 0111 13566677777888899999999999999963 23222
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccc----hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 437 EMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGN----RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 437 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~----~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
...+ ..++.|+..+.+.++.+|..++.+|..++..... ...+ . ..++.++..|... ...+..++.+|.++
T Consensus 407 ~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~--~~l~~l~~~l~~~--~~v~~~a~~al~~l 480 (861)
T 2bpt_A 407 YYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-P--GVVQACLIGLQDH--PKVATNCSWTIINL 480 (861)
T ss_dssp HHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-H--HHHHHHHHHHTSC--HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-H--HHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 2222 4688899999989999999999999998854321 1112 2 2466677777553 23455577777666
Q ss_pred c
Q 008560 513 V 513 (561)
Q Consensus 513 a 513 (561)
+
T Consensus 481 ~ 481 (861)
T 2bpt_A 481 V 481 (861)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.88 E-value=4.1e-06 Score=91.80 Aligned_cols=333 Identities=14% Similarity=0.015 Sum_probs=231.2
Q ss_pred HHHhHHHHHHHhcC---CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008560 148 VRAESRNLITRLQI---GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~---~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~ 224 (561)
+...+.++-+.+++ .+...|.+++.++..+..-..+ -..+.+..++++.+++...+.-+.-++..++..+.
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~ 106 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS 106 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc
Confidence 34456667777764 3677888888888776543221 13567778889999998888888888887775432
Q ss_pred chHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHH--hcCChHHHHHHHHHHHH
Q 008560 225 SKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEIC--QAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 225 ~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll--~~~~~~~~~~A~~aL~n 302 (561)
..-. = ++..+.+=|+++++.+|..|.++|.++... + +.+ ..++.+.+.+ .+.++.+++.|+-++.+
T Consensus 107 e~~~----L--~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~k 174 (621)
T 2vgl_A 107 ELIR----L--INNAIKNDLASRNPTFMGLALHCIANVGSR-E----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLR 174 (621)
T ss_dssp HHHH----H--HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHH----H--HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 1111 1 677778888899999999999999999542 2 222 3577888888 78899999999999999
Q ss_pred hhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHH----hhhcC-C-----
Q 008560 303 LAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKS----YWDSV-S----- 372 (561)
Q Consensus 303 Ls~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~----lL~~~-~----- 372 (561)
+....+ ..+-..+.++.+.++|.+.+..++.+|+.++..++..++.. -...++.+++ ++... .
T Consensus 175 l~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 175 LYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-----FKTSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp HHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-----HTTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred HHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHhCCCCCccch
Confidence 976331 11112478999999999989999999999999998766531 1123444444 33321 1
Q ss_pred ------CHHHHHHHHHHHHHhhc--ChhhHHHHHhcchHHHHHHHh---------cCCCH--HHHHHHHHHHHHHcCCHH
Q 008560 373 ------AVKSLEVAVELLSQLAS--CLPIAEVLVSDGFVVRLVNVL---------NCGVL--SVRIAAARAVSMLGINSK 433 (561)
Q Consensus 373 ------~~~~~e~a~~aL~~L~~--~~~~~~~l~~~~~i~~Lv~lL---------~~~~~--~~~~~A~~aL~~L~~~~~ 433 (561)
++-.+-..++.|..++. .++..+.+.+ ++..++..+ ++.+. .+...++.++..+..+++
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~ 325 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN 325 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH
Confidence 46788888888888885 2444444433 445555433 12233 778888899999876665
Q ss_pred HHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhcc-CCccchhhHHHHHHHHHh
Q 008560 434 ARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLD-PLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 434 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~k~~a~~~L~~L 512 (561)
..+. ++..|..++.++++.+|..|...|..++...+....+ + .-...++.+|. ..+ ...|..++.+|..+
T Consensus 326 ~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~--~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 326 LLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K--THIETVINALKTERD-VSVRQRAVDLLYAM 396 (621)
T ss_dssp HHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H--TTHHHHHHHHTTCCC-HHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H--HHHHHHHHHhccCCC-HhHHHHHHHHHHHH
Confidence 5443 3678889998889999999999999998765433333 3 35667788887 443 34677899999988
Q ss_pred cCCc
Q 008560 513 VHCR 516 (561)
Q Consensus 513 a~~~ 516 (561)
+...
T Consensus 397 ~~~~ 400 (621)
T 2vgl_A 397 CDRS 400 (621)
T ss_dssp CCHH
T ss_pred cChh
Confidence 7443
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.87 E-value=2.3e-07 Score=105.77 Aligned_cols=344 Identities=15% Similarity=0.073 Sum_probs=225.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcchHHHHH
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMVDSSKHVLIA 231 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~~~~~~~i~~ 231 (561)
.++..|..++... ..++..+..++....... .-...++.|+..+.++ ++.+++.++.+|..+...-. ...+..
T Consensus 94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~---~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~ 168 (876)
T 1qgr_A 94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQD 168 (876)
T ss_dssp HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGG
T ss_pred HHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHh
Confidence 3556666555445 566666666654321000 0146788999999988 89999999999999875321 111211
Q ss_pred --hchhhHHHHHHHHhcC--CHHHHHHHHHHHHHhcCC-CchH-HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhC
Q 008560 232 --EGLLLLNHLIRVLESG--SGFAKERACVALQALSFS-KENA-RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAG 305 (561)
Q Consensus 232 --~g~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~ 305 (561)
.. .++.+...+.++ +..+|..|+.+|.++... ..+- ........++.+...+.+.++..+..++.+|..+..
T Consensus 169 ~~~~--ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 169 KSNE--ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GHHH--HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33 677888888877 689999999999988753 1110 011111246667777777788899999999999875
Q ss_pred Cc-hhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHH----H-------------HHH---HhCcHHHH
Q 008560 306 FS-EIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLK----L-------------LIV---REGGIGSL 364 (561)
Q Consensus 306 ~~-~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r----~-------------~~~---~~g~i~~L 364 (561)
.. +.-...+....++.++..+.+.++.++..++.++..++....... . ... -...++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 43 222223334678888888888888999999999988875321000 0 000 02346667
Q ss_pred HHhhhc------CCCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 008560 365 KSYWDS------VSAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARK 436 (561)
Q Consensus 365 v~lL~~------~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~ 436 (561)
++.+.. +.+..++..+..+|..++..-.. .+. ..+++.+...+.+.++.+++.|+.++..++.. ++...
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 777743 12347888999999998862211 111 24567777788888999999999999999973 23222
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccc----hhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHh
Q 008560 437 EMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGN----RKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAAL 512 (561)
Q Consensus 437 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~----~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~L 512 (561)
... ...++.|+..+.+.++.+|..|+.+|..++...+. ...+ . ..++.++..|... ...+..++.+|.++
T Consensus 404 ~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~--~~l~~l~~~l~~~--~~v~~~a~~al~~l 477 (876)
T 1qgr_A 404 PLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-A--PLLQCLIEGLSAE--PRVASNVCWAFSSL 477 (876)
T ss_dssp HHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-H--HHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-H--HHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 222 24689999999999999999999999999965432 1222 1 3566777777653 23466677887777
Q ss_pred c
Q 008560 513 V 513 (561)
Q Consensus 513 a 513 (561)
+
T Consensus 478 ~ 478 (876)
T 1qgr_A 478 A 478 (876)
T ss_dssp H
T ss_pred H
Confidence 5
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.85 E-value=6e-07 Score=102.36 Aligned_cols=309 Identities=12% Similarity=0.020 Sum_probs=207.6
Q ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHH--hcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcC-C
Q 008560 151 ESRNLITRLQIG--SAESKNSAMDSLLGLLQEDDKNVVIAV--AQGVVPVLVKLMDSS--SLEMKEKTVASIARVSMV-D 223 (561)
Q Consensus 151 ~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~lL~~~--~~~~~e~a~~~L~~La~~-~ 223 (561)
.++.++..+.++ ++..|..++..+..++..-.. ..+. -...++.+...+.++ +..++..|+.++..+... +
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888 888899999999888865311 1111 135567777888776 689999999999987743 1
Q ss_pred cc-hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHH
Q 008560 224 SS-KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLR 301 (561)
Q Consensus 224 ~~-~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~ 301 (561)
.. ........ .++.+...+.+.+.++|..++.+|..+..... .-........++.++..+.+.++..+..|+..+.
T Consensus 207 ~~~~~~~~~~~--il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 207 ANFDKESERHF--IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHTSHHHHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 11 11111224 67777777888889999999999999876432 1111222356788888787888888999999888
Q ss_pred HhhCCchh----------------h--HHH---HhhhhHHHHHHHhhc-------CCHHHHHHHHHHHHHhcCCChHHHH
Q 008560 302 NLAGFSEI----------------K--ENF---IEENAVMVLLGLVAS-------GTALAQENVFGCLCNLVSDDESLKL 353 (561)
Q Consensus 302 nLs~~~~~----------------r--~~i---~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~r~ 353 (561)
+++..... + ..+ .-...++.+++.+.. ++..++..|+.+|..++.....
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--- 361 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---
Confidence 88753200 0 001 113467778888753 2346888888998888653211
Q ss_pred HHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcC-h-hhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 354 LIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASC-L-PIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 354 ~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~-~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
.++ ...++.+...+.+. +..+++.++.+|..++.. . +...... ..+++.++..+.+.++.++..|+.+|.+++..
T Consensus 362 ~~~-~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 362 DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 111 12344455555543 468999999999999963 2 3222222 35789999999988999999999999999862
Q ss_pred -HHH---HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 432 -SKA---RKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 432 -~~~---~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
+.. ...+ ...++.|+..+.+. +.++..|+.+|.+++..
T Consensus 439 ~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 439 LPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp CGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred CchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 210 1111 13467888888764 88999999999999854
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.82 E-value=1e-07 Score=113.11 Aligned_cols=345 Identities=13% Similarity=0.084 Sum_probs=228.7
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
..+..++..+.+.+.+.|..|...|.+....+...-..-.....++.|+..|.+.++.+|..|+.+|..++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 4577899999999999999999999887654321000001124577888889888999999999999999854222 11
Q ss_pred HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH------HHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHH
Q 008560 230 IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA------RAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRN 302 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~n 302 (561)
-.. .++.|+..|.+.+..+|..|+.+|..++..-... ..-.-...++.|+..+. +.++..+..|+.+|.+
T Consensus 84 -~~~--i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 -VET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHH--HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 134 7888888888888889999999999887532111 00111346888999998 4778899999999999
Q ss_pred hhCC--chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHH
Q 008560 303 LAGF--SEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVA 380 (561)
Q Consensus 303 Ls~~--~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a 380 (561)
++.. ...... -...++.|+..+.+.+..++..|+.+|..++...+. .+ -...++.++..+....+...+..+
T Consensus 161 ~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 161 MLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHH
Confidence 8742 111111 145778888888888889999999999999876432 11 234588888888765434567778
Q ss_pred HHHHHHhhc-ChhhHHHHHh--cchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhcc---
Q 008560 381 VELLSQLAS-CLPIAEVLVS--DGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLD--- 452 (561)
Q Consensus 381 ~~aL~~L~~-~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~--- 452 (561)
+.++..++. .+. .+.. ..+++.++..+.+.++.+++.+..++..++.. ++....+ ...++.++..+.
T Consensus 235 ~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 235 IQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDP 309 (1230)
T ss_dssp HHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCC
Confidence 888888875 222 1222 26789999999888889999999999888752 2211111 112333333332
Q ss_pred ----------------------------------CCCHHHHHHHHHHHHHhhccccc-hhhHhhcCCCHHHHHHhccCCc
Q 008560 453 ----------------------------------GKAVEEKESAAKALSTLMLYAGN-RKILRKDERGIVTVVQLLDPLI 497 (561)
Q Consensus 453 ----------------------------------~~~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~ 497 (561)
+....+|..|+.+|..++...+. -..+. ..-++.++..+....
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKERE 387 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSS
T ss_pred CCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCc
Confidence 11235788999999998864332 12222 246777777774433
Q ss_pred cchhhHHHHHHHHHhc
Q 008560 498 QNLDKKYPVAILAALV 513 (561)
Q Consensus 498 ~~~~k~~a~~~L~~La 513 (561)
...+..++.++..+.
T Consensus 388 -~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 388 -ENVKADVFHAYLSLL 402 (1230)
T ss_dssp -SHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHH
Confidence 334555666665553
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.81 E-value=3.4e-06 Score=92.45 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=199.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
...+.++.+++.+.+.|.-+--.+..++.++++.... .+..+.+=|.++++.++-.|+.+|+++...+ +
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e-----~- 143 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSRE-----M- 143 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-----H-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-----H-
Confidence 3456677888889988888888888888776543322 2556777778899999999999999996421 2
Q ss_pred HhchhhHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCch
Q 008560 231 AEGLLLLNHLIRVL--ESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSE 308 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL--~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~ 308 (561)
.+. .++.+.+.| .+.++.+|..|+.++.++....+ ..+-..+.++.|.+++.+.++.++..|+.+|..++....
T Consensus 144 ~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 144 AEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 345 788899999 88899999999999999976322 111124789999999999999999999999999986442
Q ss_pred hhHHHHhhhhHHHHH----HHhhcC-------------CHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhc
Q 008560 309 IKENFIEENAVMVLL----GLVASG-------------TALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDS 370 (561)
Q Consensus 309 ~r~~i~~~g~v~~Lv----~lL~~~-------------~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~ 370 (561)
. .+ ...++.++ +++..+ ++-.|...+..|..++.. ++..+..+.+ .++.++..+..
T Consensus 220 ~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~ 293 (621)
T 2vgl_A 220 E--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQE 293 (621)
T ss_dssp H--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHS
T ss_pred H--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhcc
Confidence 1 11 12344444 444322 356888888888888864 4444443332 23333332211
Q ss_pred CC----------CHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 008560 371 VS----------AVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGE 440 (561)
Q Consensus 371 ~~----------~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~ 440 (561)
.. ...+...|+.++..+...++... .++..|..+|.+.++.++..|...|..++........+.
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~- 367 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK- 367 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH-
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH-
Confidence 11 12566677777777764443322 356777788877788888888888888886421122232
Q ss_pred CCChHHHHHhcc-CCCHHHHHHHHHHHHHhhcc
Q 008560 441 CGCIGPLIKMLD-GKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 441 ~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~ 472 (561)
.....++..+. +.+..++..+.++|..|+..
T Consensus 368 -~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 368 -THIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 24666777777 77888888888888888743
No 66
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.78 E-value=3.3e-10 Score=125.26 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=80.2
Q ss_pred cccchhhhHHHHHHhhhHhhhcc----cCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCcchhhhhHHH
Q 008560 27 KHFKGKWVIVKTKLNDLETQLKD----FSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQG-VSLTEGKLKTQSDIDS 101 (561)
Q Consensus 27 ~~f~~~~~~~~~~~~~l~~~l~~----~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~-~~y~~g~l~~~sd~~~ 101 (561)
..+..+|..+..|+++......+ ..++|..|.|||+.++|+| ||..++| +|| ||.+
T Consensus 858 ~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~D----------PVilpsG~~Ty---------dR~~ 918 (968)
T 3m62_A 858 PEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKD----------PVILPASKMNI---------DRST 918 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSS----------EEECTTTCCEE---------EHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhC----------CeEcCCCCEEE---------CHHH
Confidence 45778999999999988776542 4689999999999999997 7999997 799 9999
Q ss_pred HHHHhhhhhcchhHHHhccCCCCCccccccccccccccc
Q 008560 102 VLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGVVS 140 (561)
Q Consensus 102 i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li~~ 140 (561)
|++||.. +.+|| +|.++|. ..+++||++||..|+.
T Consensus 919 I~~wl~~-~~tdP--~Tr~~L~-~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 919 IKAHLLS-DSTDP--FNRMPLK-LEDVTPNEELRQKILC 953 (968)
T ss_dssp HHHHHTT-CCBCT--TTCCBCC-GGGCEECHHHHHHHHH
T ss_pred HHHHHhc-CCCCC--CCCCCCC-cccccccHHHHHHHHH
Confidence 9999987 67999 9999998 5689999999998876
No 67
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.77 E-value=2.4e-10 Score=90.89 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=59.9
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccc
Q 008560 50 FSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLI 129 (561)
Q Consensus 50 ~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~li 129 (561)
+...|..|.||||.++|++ ||....|++| ++..|++|+. ++.+|| ++.+++. ..+|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~d----------PV~~~cGhtf---------~r~~I~~~l~-~~~~cP--~~~~~l~-~~~l~ 64 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTD----------PVRLPSGTVM---------DRSIILRHLL-NSPTDP--FNRQMLT-ESMLE 64 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHHH-HCSBCT--TTCCBCC-GGGCE
T ss_pred hhcCchheECcccCchhcC----------CeECCCCCEE---------CHHHHHHHHh-cCCCCC--CCcCCCC-hHhcc
Confidence 4567899999999999997 6888789999 9999999998 478999 9999987 46899
Q ss_pred ccccccccccc
Q 008560 130 KSGVLQDGVVS 140 (561)
Q Consensus 130 pN~tLr~li~~ 140 (561)
||+.|+..|+.
T Consensus 65 pn~~L~~~i~~ 75 (85)
T 2kr4_A 65 PVPELKEQIQA 75 (85)
T ss_dssp ECHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999988765
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.76 E-value=4.2e-10 Score=101.61 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=68.8
Q ss_pred hhhhHHHHHHhhhHhhh---cccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhh
Q 008560 31 GKWVIVKTKLNDLETQL---KDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLD 107 (561)
Q Consensus 31 ~~~~~~~~~~~~l~~~l---~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~ 107 (561)
.+|.....++..|-+.. ++-..+|..|.||||.++|.| ||..+.|++| |+..|++|+.
T Consensus 78 ~~~~~~i~~~~~l~~~~~~~~~~~~ip~~f~CPI~~elm~D----------PV~~~~Ghtf---------er~~I~~~l~ 138 (179)
T 2f42_A 78 SKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMRE----------PCITPSGITY---------DRKDIEEHLQ 138 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCCCCCGGGBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCcHhhcccCccccCCC----------CeECCCCCEE---------CHHHHHHHHH
Confidence 34444444444444333 334578999999999999997 6888999999 9999999998
Q ss_pred hhhcchhHHHhccCCCCCccccccccccccccc
Q 008560 108 RHVRDGDVLIKSGVLQDGDVLIKSGVLQDGVVS 140 (561)
Q Consensus 108 ~~~~~cp~l~t~~~l~~~~~lipN~tLr~li~~ 140 (561)
.+..+|| +|..++. ..+|+||+.|+..|..
T Consensus 139 ~~~~tcP--~t~~~l~-~~~L~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 139 RVGHFDP--VTRSPLT-QDQLIPNLAMKEVIDA 168 (179)
T ss_dssp HTCSBCT--TTCCBCC-GGGCEECHHHHHHHHH
T ss_pred hCCCCCC--CCcCCCC-hhhCcchHHHHHHHHH
Confidence 7555899 9999987 5689999999998765
No 69
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.71 E-value=4.4e-10 Score=91.80 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=58.5
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccc
Q 008560 51 SDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQG-VSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLI 129 (561)
Q Consensus 51 ~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~-~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~li 129 (561)
.+.|..|.||||.++|+| ||....| ++| ||..|++|++. +.+|| ++.+++. ..+|+
T Consensus 17 ~~~p~~~~CpI~~~~m~d----------PV~~~cG~htf---------~r~cI~~~l~~-~~~cP--~~~~~l~-~~~L~ 73 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCD----------PVVLPSSRVTV---------DRSTIARHLLS-DQTDP--FNRSPLT-MDQIR 73 (98)
T ss_dssp CSCCTTTBCTTTCSBCSS----------EEECTTTCCEE---------EHHHHHHHTTT-SCBCT--TTCSBCC-TTTSE
T ss_pred hcCcHhcCCcCccccccC----------CeECCCCCeEE---------CHHHHHHHHHh-CCCCC--CCCCCCC-hhhce
Confidence 367899999999999997 5776666 999 99999999986 78999 9999987 46899
Q ss_pred ccccccccccc
Q 008560 130 KSGVLQDGVVS 140 (561)
Q Consensus 130 pN~tLr~li~~ 140 (561)
||+.|+..|+.
T Consensus 74 pn~~Lk~~I~~ 84 (98)
T 1wgm_A 74 PNTELKEKIQR 84 (98)
T ss_dssp ECHHHHHHHHH
T ss_pred EcHHHHHHHHH
Confidence 99999988765
No 70
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.69 E-value=3.6e-10 Score=92.67 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=60.6
Q ss_pred ccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccc
Q 008560 49 DFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVL 128 (561)
Q Consensus 49 ~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~l 128 (561)
+..+.|..|.||||.++|.| ||....|++| ++..|++|++ ++.+|| +|.+++. ..+|
T Consensus 22 ~~~~~p~~~~CpI~~~~m~d----------PV~~~cGhtf---------~r~~I~~~l~-~~~~cP--~~~~~l~-~~~L 78 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTD----------PVRLPSGTIM---------DRSIILRHLL-NSPTDP--FNRQTLT-ESML 78 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSS----------EEEETTTEEE---------EHHHHHHHTT-SCSBCS--SSCCBCC-TTSS
T ss_pred hhccCcHhhCCcCccCcccC----------CeECCCCCEE---------chHHHHHHHH-cCCCCC--CCCCCCC-hhhc
Confidence 44577899999999999997 6888889999 9999999998 478999 9999987 4689
Q ss_pred cccccccccccc
Q 008560 129 IKSGVLQDGVVS 140 (561)
Q Consensus 129 ipN~tLr~li~~ 140 (561)
+||+.|+..|+.
T Consensus 79 ~pn~~Lk~~I~~ 90 (100)
T 2kre_A 79 EPVPELKEQIQA 90 (100)
T ss_dssp EECHHHHHHHHH
T ss_pred eECHHHHHHHHH
Confidence 999999988764
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=1.9e-09 Score=79.59 Aligned_cols=56 Identities=4% Similarity=-0.095 Sum_probs=48.9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccccccc
Q 008560 56 AASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVL 134 (561)
Q Consensus 56 ~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tL 134 (561)
.|.||||.++|.| ||.. .+|++| ||+.|++||.. +++|| +|.++|. ..+|+||++-
T Consensus 3 ~~~CpIs~~~m~d----------PV~~~~sG~~y---------er~~I~~~l~~-~~~cP--~t~~~L~-~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRR----------PVLSPKSRTIF---------EKSLLEQYVKD-TGNDP--ITNEPLS-IEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSS----------EEEETTTTEEE---------EHHHHHHHHHH-HSBCT--TTCCBCC-GGGCEECCCC
T ss_pred eEEecCCCCCCCC----------CEEeCCCCcEE---------cHHHHHHHHHh-CCCCc--CCcCCCC-hhhcEECccC
Confidence 4889999999997 5776 889999 99999999986 57899 9999997 5789999874
No 72
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.55 E-value=3.8e-06 Score=99.71 Aligned_cols=354 Identities=12% Similarity=0.046 Sum_probs=221.1
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhh-----HHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNV-----VIAVAQGVVPVLVKLMD-SSSLEMKEKTVASIARVSM 221 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~-----~~i~~~g~v~~Lv~lL~-~~~~~~~e~a~~~L~~La~ 221 (561)
....+..++..+..++...|..|+..|..++..-.... ..-.-...+|.|+..+. ++++.+++.|+.+|..+..
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 34456677788887777888888888888776433210 00112457889999998 5789999999999999874
Q ss_pred C--CcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHH
Q 008560 222 V--DSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGT-PGSQAFAAG 298 (561)
Q Consensus 222 ~--~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~A~~ 298 (561)
. +..... -.. .++.+...|.+.+..+|..|+.+|..++...... + -...++.|+..+.+.+ ...+..++.
T Consensus 164 ~~~~~l~~~--~~~--ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 164 RQGGLLVNF--HPS--ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HTCSSCTTT--HHH--HHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HhHhHHHHH--HHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 2 111111 144 7888888899889999999999999998753321 1 1235788888887653 345566777
Q ss_pred HHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHhCcHHHHHHhhhc-------
Q 008560 299 VLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDE-SLKLLIVREGGIGSLKSYWDS------- 370 (561)
Q Consensus 299 aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~r~~~~~~g~i~~Lv~lL~~------- 370 (561)
++..++.....+-.-.-...++.+++.+.+.+++++..++.++..++.... ..+..+ ...++.+++.+..
T Consensus 237 ~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~ 314 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYD 314 (1230)
T ss_dssp HHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCc
Confidence 777776432111000124688999999988888899999988888775322 111111 1233333333321
Q ss_pred -----------------------------CCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcCCCHHHHHH
Q 008560 371 -----------------------------VSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNCGVLSVRIA 420 (561)
Q Consensus 371 -----------------------------~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 420 (561)
+...++++.|+.+|..++. .++....+. ...++.++..+.+.+..++..
T Consensus 315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHH
T ss_pred ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHH
Confidence 0112568889999999886 332222332 345777888887778899999
Q ss_pred HHHHHHHHcCC--H---------------HHHHHHH--hCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccch-hhHh
Q 008560 421 AARAVSMLGIN--S---------------KARKEMG--ECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNR-KILR 480 (561)
Q Consensus 421 A~~aL~~L~~~--~---------------~~~~~i~--~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~ 480 (561)
+..++..++.. . .....+. -...++.+...+.+.++.+|..+..+|..++...+.. ....
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 99988887641 0 0111111 1234566667788889999999999999888543211 1111
Q ss_pred hcCCCHHHHHHhccCCcc-chhhHHHHHHHHHhc
Q 008560 481 KDERGIVTVVQLLDPLIQ-NLDKKYPVAILAALV 513 (561)
Q Consensus 481 ~~~~~i~~Lv~lL~~~~~-~~~k~~a~~~L~~La 513 (561)
..-++.++.+|..... ...+..++..+..+.
T Consensus 474 --~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 474 --PVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 1245667777755422 133445666666664
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.47 E-value=0.00018 Score=74.17 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=200.7
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCc---hhhHHHHhcCCh-HHHHH-hhcCCCHHHHHHHHHHHHHHhcCCc
Q 008560 151 ESRNLITRLQ-IGSAESKNSAMDSLLGLLQEDD---KNVVIAVAQGVV-PVLVK-LMDSSSLEMKEKTVASIARVSMVDS 224 (561)
Q Consensus 151 ~v~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~---~~~~~i~~~g~v-~~Lv~-lL~~~~~~~~e~a~~~L~~La~~~~ 224 (561)
.+..++..|+ ..+.+...-.+.-+..++.+++ .....+.+.... ..+.. ++...++-.+..+..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 3455666665 3456666666666667777665 222333333222 11332 3334445566677666666643211
Q ss_pred chHHHHHhchhhHH--HHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHhcCC--HHHHHHHHhcC-----------
Q 008560 225 SKHVLIAEGLLLLN--HLIRVLESG-SGFAKERACVALQALSFSKENARAIGSRGG--ISSLLEICQAG----------- 288 (561)
Q Consensus 225 ~~~~i~~~g~~~i~--~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~--i~~Lv~ll~~~----------- 288 (561)
.-... -+. .+. -++..|.+. +...+..++.+|..|...++.|..+.+.++ ++.++.+++..
T Consensus 158 ~~~~~-l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 158 HNVKL-VEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp CCHHH-HHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ccHhH-HHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 10111 112 222 355566653 456677899999999999999998876433 67776655421
Q ss_pred ------ChHHHHHHHHHHHHhhCCchhhHHHHhhhhH--HHHHHHhhc-CCHHHHHHHHHHHHHhcCCCh-----HHHHH
Q 008560 289 ------TPGSQAFAAGVLRNLAGFSEIKENFIEENAV--MVLLGLVAS-GTALAQENVFGCLCNLVSDDE-----SLKLL 354 (561)
Q Consensus 289 ------~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v--~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~-----~~r~~ 354 (561)
....+..++-++|-|+..++....+...+.. +.|++++.. ..+.+..-++.+|.|+...+. ...+.
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~ 314 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 314 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 1334688999999999999988888877754 667777764 456788999999999998762 12333
Q ss_pred HHHhCcHHHHHHhhhc--CCCHHHHHHHHHH-------HHHhhcChhh------------------------HHHHHhc-
Q 008560 355 IVREGGIGSLKSYWDS--VSAVKSLEVAVEL-------LSQLASCLPI------------------------AEVLVSD- 400 (561)
Q Consensus 355 ~~~~g~i~~Lv~lL~~--~~~~~~~e~a~~a-------L~~L~~~~~~------------------------~~~l~~~- 400 (561)
++..++ .+++..|.. -+|+++.+..-.. +..++++++. ...+-+.
T Consensus 315 ~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~ 393 (480)
T 1ho8_A 315 LLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393 (480)
T ss_dssp HHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred HHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence 444555 446666644 2444433322222 2222222221 1223232
Q ss_pred -chHHHHHHHhcC----------CCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 008560 401 -GFVVRLVNVLNC----------GVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALST 468 (561)
Q Consensus 401 -~~i~~Lv~lL~~----------~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~ 468 (561)
..+..|+++|.+ .++.+..-|+.=++.++. .|+.+..+.+.|+=..+++++...++++|..|..++..
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 347899999973 245666777778888887 68888888888999999999999999999999999988
Q ss_pred hhccc
Q 008560 469 LMLYA 473 (561)
Q Consensus 469 L~~~~ 473 (561)
+..+.
T Consensus 474 lm~~~ 478 (480)
T 1ho8_A 474 IIGYT 478 (480)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 77543
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.36 E-value=8e-06 Score=78.23 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=137.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHh
Q 008560 154 NLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM-DSSSLEMKEKTVASIARVSMVDSSKHVLIAE 232 (561)
Q Consensus 154 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~ 232 (561)
.+.+.+++.++..|..|+..|..++..+++....- -...++.|..++ ++.+..++..|+.++..|+..-...-.-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 36778889999999999999999988743311000 024477788888 4889999999999999998532111011123
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC-c-h-h
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF-S-E-I 309 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~-~-~-~ 309 (561)
. .+++++..+.+.+..+|..++.+|.++...... ...++.|...+.+.++..+..++..|..+... . + .
T Consensus 98 ~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 A--CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp H--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred H--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 4 899999999999999999999999999775332 12577788888999999999999999996433 2 2 1
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
-.... ...++.++.++.+....++..|..++..++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11222 3688999999999999999999999998864
No 75
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=3.7e-08 Score=97.09 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=60.0
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccc
Q 008560 51 SDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIK 130 (561)
Q Consensus 51 ~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lip 130 (561)
...|.+|.||||.++|.+ ||+...|+|| ++..|++|++.+..+|| ++.+++. ..+++|
T Consensus 203 ~~~~~~~~c~i~~~~~~d----------Pv~~~~gh~f---------~~~~i~~~~~~~~~~cP--~~~~~~~-~~~l~~ 260 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMRE----------PCITPSGITY---------DRKDIEEHLQRVGHFNP--VTRSPLT-QEQLIP 260 (281)
T ss_dssp CCCCSTTBCTTTCSBCSS----------EEECSSCCEE---------ETTHHHHHHHHTCSSCT--TTCCCCC-GGGCEE
T ss_pred CCCCcccCCcCcCCHhcC----------CeECCCCCEE---------CHHHHHHHHHHCCCCCc--CCCCCCc-hhcCcc
Confidence 367899999999999997 6887789999 99999999998777799 9999987 568999
Q ss_pred cccccccccc
Q 008560 131 SGVLQDGVVS 140 (561)
Q Consensus 131 N~tLr~li~~ 140 (561)
|++|+.+|..
T Consensus 261 n~~l~~~i~~ 270 (281)
T 2c2l_A 261 NLAMKEVIDA 270 (281)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999998764
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.24 E-value=0.00044 Score=71.39 Aligned_cols=318 Identities=14% Similarity=0.070 Sum_probs=194.8
Q ss_pred HhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc---chHHHHHhchhhHHHHHH-HHhcCCHHHHHHHHHHHHHhc
Q 008560 189 VAQGVVPVLVKLMDSS-SLEMKEKTVASIARVSMVDS---SKHVLIAEGLLLLNHLIR-VLESGSGFAKERACVALQALS 263 (561)
Q Consensus 189 ~~~g~v~~Lv~lL~~~-~~~~~e~a~~~L~~La~~~~---~~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls 263 (561)
.+..++..++.+|... +.++....+..+.-+-.++. .+..+.....+....+.. .+..++.-....++.++.-++
T Consensus 74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3456788899998754 58888888888887776654 333333222113332333 233344555566666655554
Q ss_pred CCC-chHHHHHhcCCHH--HHHHHHhcC-ChHHHHHHHHHHHHhhCCchhhHHHHhhh--hHHHHHHHhhc---------
Q 008560 264 FSK-ENARAIGSRGGIS--SLLEICQAG-TPGSQAFAAGVLRNLAGFSEIKENFIEEN--AVMVLLGLVAS--------- 328 (561)
Q Consensus 264 ~~~-~~~~~i~~~g~i~--~Lv~ll~~~-~~~~~~~A~~aL~nLs~~~~~r~~i~~~g--~v~~Lv~lL~~--------- 328 (561)
... .....+. ..+. -++..+.+. +...+..++.+|..|...++.|..+.+++ .++.+++++..
T Consensus 154 ~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 154 QNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp STTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred ccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 321 1111100 0112 244455552 34556789999999999999999998654 46777665441
Q ss_pred ------C--CHHHHHHHHHHHHHhcCCChHHHHHHHHhCcH--HHHHHhhhcCCCHHHHHHHHHHHHHhhcCh-----hh
Q 008560 329 ------G--TALAQENVFGCLCNLVSDDESLKLLIVREGGI--GSLKSYWDSVSAVKSLEVAVELLSQLASCL-----PI 393 (561)
Q Consensus 329 ------~--~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i--~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~-----~~ 393 (561)
+ ...++.+++-|++-|++..+ .-..+...+.. ..|+.+++....+++.+.++.+|.|+.... ..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~ 310 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV 310 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence 1 12568999999999999876 55566666643 677788888777899999999999999743 12
Q ss_pred HHH-HHhcchHHHHHHHhcCC---CHHHHHHHHHHHHHH-------cCCHHHHHHH------------------------
Q 008560 394 AEV-LVSDGFVVRLVNVLNCG---VLSVRIAAARAVSML-------GINSKARKEM------------------------ 438 (561)
Q Consensus 394 ~~~-l~~~~~i~~Lv~lL~~~---~~~~~~~A~~aL~~L-------~~~~~~~~~i------------------------ 438 (561)
... +...++ .++++.|... ++++.+.-....-.| +.-+++..++
T Consensus 311 ~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf 389 (480)
T 1ho8_A 311 IKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF 389 (480)
T ss_dssp HHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence 222 222334 5566666543 444443322221111 1112233222
Q ss_pred HhC--CChHHHHHhccC----------CCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCccchhhHHHH
Q 008560 439 GEC--GCIGPLIKMLDG----------KAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPV 506 (561)
Q Consensus 439 ~~~--g~i~~Lv~ll~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~ 506 (561)
.+. ..+..|+++|.+ .++.+..-|+.=+..++.+.++.+.++.+-++=..+++++.++++ ..+..|+
T Consensus 390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~-~Vr~~AL 468 (480)
T 1ho8_A 390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDS-RVKYEAL 468 (480)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSH-HHHHHHH
T ss_pred HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCH-HHHHHHH
Confidence 121 247889999973 256677778888888888777777777776777778889987654 4466677
Q ss_pred HHHHH
Q 008560 507 AILAA 511 (561)
Q Consensus 507 ~~L~~ 511 (561)
-|+-.
T Consensus 469 ~avQk 473 (480)
T 1ho8_A 469 KATQA 473 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 77
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=4.3e-08 Score=79.44 Aligned_cols=66 Identities=8% Similarity=0.101 Sum_probs=54.8
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCcchhhhhHHHHHHHhhhh-----hcchhHHHhccC---CC
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQKC-QGVSLTEGKLKTQSDIDSVLAKLDRH-----VRDGDVLIKSGV---LQ 123 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c-~~~~y~~g~l~~~sd~~~i~~~l~~~-----~~~cp~l~t~~~---l~ 123 (561)
.+..|.||||+++|.+ ||... .|++| ++..|++|++.+ ..+|| +|... +.
T Consensus 4 ~~~~~~CPI~~~~~~d----------PV~~~~cGh~f---------~r~cI~~~l~~~~~~~~~~~CP--~tgc~~~~l~ 62 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK----------PVKNKVCGHTY---------EEDAIVRMIESRQKRKKKAYCP--QIGCSHTDIR 62 (94)
T ss_dssp CSSCCBCTTTCSBCSS----------EEEESSSCCEE---------EHHHHHHHHHHHHTTTCCBCCC--STTCCCCCBC
T ss_pred CCcEeECcCcCchhcC----------CEEcCCCCCee---------cHHHHHHHHHHccCcCCCCCCC--cCcCcccccC
Confidence 4567999999999997 68874 79999 999999999875 36999 86554 65
Q ss_pred CCccccccccccccccc
Q 008560 124 DGDVLIKSGVLQDGVVS 140 (561)
Q Consensus 124 ~~~~lipN~tLr~li~~ 140 (561)
..+|+||+.|+..|..
T Consensus 63 -~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 63 -KSDLIQDEALRRAIEN 78 (94)
T ss_dssp -GGGEEECHHHHHHHHH
T ss_pred -HhhCcCCHHHHHHHHH
Confidence 5689999999988764
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.19 E-value=0.0006 Score=60.57 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=155.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKENF 313 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~~i 313 (561)
.+..++.+|+..-.-++.+|...+..++.. ++.... .+..|+.+++ ++........++++..++... ..+
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~ 104 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PEL 104 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHH
Confidence 899999999999999999999999999876 333332 3455666655 455566677777888777533 222
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhh
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPI 393 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~ 393 (561)
+ .+.||.+..-..-+++..+.+...+|..++..++..-. +++.-+..++.+.+ ..-+-.++..|.-+..+ +
T Consensus 105 v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd-~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 105 V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKN-REDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTT--T
T ss_pred H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcc--C
Confidence 2 25778888888888999999999999999988875433 34455667777544 35566666666665542 1
Q ss_pred HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 394 AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 394 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
.+. -..++|+|..+|.+++.-++..|+.+|.+++. ++..++.+.+ -++=+.+.+..++....+.|..+...
T Consensus 176 ~~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 176 FKY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred ccc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 111 14689999999999999999999999999998 7887777632 34456678888999988988887743
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.17 E-value=0.00014 Score=67.43 Aligned_cols=186 Identities=11% Similarity=0.076 Sum_probs=146.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-chHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDS-SKHVL 229 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~-~~~~i 229 (561)
.+..++..|+..+...+.+++..|-++.++-+...+...-...++.++.++++.|..+.-.|+.+|..|-.+.. ..+.+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56677888888999999999999999999855444444446779999999999999999999999998876543 33333
Q ss_pred HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh
Q 008560 230 IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI 309 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~ 309 (561)
. . ....|..++++++.-.++.++..+..+.-....+ +.+..|.+++.+.+...+.+|.++|.|++...+.
T Consensus 114 ~--K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 114 L--K--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp H--H--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred H--H--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 2 2 6688889999999999999999999993333233 2567788888889999999999999999875432
Q ss_pred hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 008560 310 KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDD 348 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 348 (561)
...+ .+++.-+-.++++.++.+++.|+..|..+....
T Consensus 184 ~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 2211 345566778999999999999999999998753
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=7.4e-07 Score=76.91 Aligned_cols=122 Identities=12% Similarity=0.124 Sum_probs=91.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchH
Q 008560 190 AQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENA 269 (561)
Q Consensus 190 ~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
....++.|+.+|+++++.++..|+.+|..+. .. .++.|+..|++.++.+|..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~~--~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG-----------DE--AFEPLLESLSNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS-----------ST--THHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------ch--HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence 3567888899999888888888888776553 12 46888999999999999999999988753
Q ss_pred HHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008560 270 RAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNL 344 (561)
Q Consensus 270 ~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 344 (561)
..+++.|+..+.+.++.++..|+++|.++. +..+++.|++++.+.+..++..|+.+|.+|
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235889999999999999999999999875 246789999999888888999998887653
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.9e-05 Score=76.07 Aligned_cols=188 Identities=10% Similarity=0.097 Sum_probs=135.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccCchhhHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCC---cchHH
Q 008560 155 LITRLQIGSAESKNSAMDSLLG-LLQEDDKNVVIAVA-QGVVPVLVKLM-DSSSLEMKEKTVASIARVSMVD---SSKHV 228 (561)
Q Consensus 155 Lv~~L~~~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~g~v~~Lv~lL-~~~~~~~~e~a~~~L~~La~~~---~~~~~ 228 (561)
+.+.+++.++..|.+|+..|.. ++.++++....-.+ ...+..|...+ +..+..++..|+.+|..|+..- .....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5667889999999999999999 88654432200001 13466777888 7888999999999999998432 11101
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHH--hcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIG--SRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
...- .+++++..+++....++..+..+|..+...-+. .... -...++.|+..+++.++..+..++.+|..+...
T Consensus 101 -y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 -YVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp -HHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 1233 789999999998899999999999888764210 0000 112577888889999999999999999888754
Q ss_pred chh-hHHH---HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 307 SEI-KENF---IEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 307 ~~~-r~~i---~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
... -..+ +....++.|.+++.+.+..++..|..++..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 1222 225689999999999999999999999998863
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=0.00045 Score=78.23 Aligned_cols=367 Identities=13% Similarity=0.065 Sum_probs=229.3
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchH
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKH 227 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~ 227 (561)
....+.+++..+...+...+..++..+..+..++.... ....+.+..|.+.+...... |.|+.++..|+.......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC
Confidence 34456667777877656677788888888877542221 11236778888888775433 999999999986543211
Q ss_pred --HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCC-hHHHHHHHHHHHHh
Q 008560 228 --VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGT-PGSQAFAAGVLRNL 303 (561)
Q Consensus 228 --~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~A~~aL~nL 303 (561)
.-.--+ .++.+...+.+....+|..|..++..+... +.... ...+|.|+..+.+.. =..+..|+.++..|
T Consensus 88 ~~e~~~~~--~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIVQ--LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHHT--THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchHH--HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111124 677778877777788998888888877543 22221 336899999997764 46788899999999
Q ss_pred hCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC--CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHH
Q 008560 304 AGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS--DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAV 381 (561)
Q Consensus 304 s~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~ 381 (561)
+..........=...||.+-+.+-+...+++..|..++..+|. +|.++ +..+|.|++.+..+. -...++
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~---~~~~~~ 232 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT---EVPETV 232 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT---HHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh---hhHHHH
Confidence 8644222222334688999999999999999999999999886 23221 246888999888743 233334
Q ss_pred HHHHHhhcChhh-HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHhCCChHHHHHhcc-CCCH
Q 008560 382 ELLSQLASCLPI-AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI---NSKARKEMGECGCIGPLIKMLD-GKAV 456 (561)
Q Consensus 382 ~aL~~L~~~~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~---~~~~~~~i~~~g~i~~Lv~ll~-~~~~ 456 (561)
..|..-.--.+. ...+ .-.+|.|.+-|...+..++..++-++-|+|. ++.....+. -..+|.|-+... ..+|
T Consensus 233 ~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~p 309 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADP 309 (986)
T ss_dssp HHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSH
T ss_pred HHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCH
Confidence 433332211111 1111 1135677778888888889999999999997 454444443 245677777666 4789
Q ss_pred HHHHHHHHHHHHhhccccc--hhhH--hhcCCCH----HHHHHhccCCcc----chhhHHHHHHHHHhcCCchHHHHHHH
Q 008560 457 EEKESAAKALSTLMLYAGN--RKIL--RKDERGI----VTVVQLLDPLIQ----NLDKKYPVAILAALVHCRKCRKQMVA 524 (561)
Q Consensus 457 ~v~~~A~~aL~~L~~~~~~--~~~~--~~~~~~i----~~Lv~lL~~~~~----~~~k~~a~~~L~~La~~~~~r~~i~~ 524 (561)
++|+.|..++..|...... ...+ ....+.+ ..+-..+..... .....|......++..........+.
T Consensus 310 e~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 389 (986)
T 2iw3_A 310 EAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccccchhHHH
Confidence 9999999999988632111 0000 0011112 224444543211 12345677777777755555555566
Q ss_pred cCchHHHHHhhc
Q 008560 525 AGACLHLRKLVE 536 (561)
Q Consensus 525 ~g~i~~L~~Ll~ 536 (561)
....++|..++.
T Consensus 390 ~~~~~~~~~~~~ 401 (986)
T 2iw3_A 390 THITPYMTIFLH 401 (986)
T ss_dssp HHTHHHHTTTSC
T ss_pred HHHHHHHHHhcc
Confidence 666677666654
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.05 E-value=0.0031 Score=70.69 Aligned_cols=290 Identities=13% Similarity=0.016 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHH
Q 008560 164 AESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMD---SSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHL 240 (561)
Q Consensus 164 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~L 240 (561)
...+..|+.+|.-+-..+. .+++..|-..|. ++++.++.-|+-+|..+...... . ++..|
T Consensus 372 ~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~--~~~lL 434 (963)
T 4ady_A 372 NWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------D--TTDYL 434 (963)
T ss_dssp THHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------H--HHHHH
T ss_pred hHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------H--HHHHH
Confidence 3456666666665554443 234666666665 56788888898888887654321 3 56777
Q ss_pred HHHHhcCC--------HHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHH
Q 008560 241 IRVLESGS--------GFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKEN 312 (561)
Q Consensus 241 v~lL~~~~--------~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~ 312 (561)
...|.+.+ ..++..|+..|.-......+. .+++.|..++.+.+......|+-+|..+-.+..+
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--- 505 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--- 505 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---
Confidence 77777654 667888888887654332221 2467788888877776666777777765322222
Q ss_pred HHhhhhHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCh
Q 008560 313 FIEENAVMVLLGLV-ASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCL 391 (561)
Q Consensus 313 i~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~ 391 (561)
..++..|++.+ ...++.++..++..|..+..+++ ..++.+++.|....++.++..++.+++.-+...
T Consensus 506 ---~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 506 ---PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp ---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS
T ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 23455666654 45566888889999998887765 368888889887777788888888887655322
Q ss_pred hhHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHHh
Q 008560 392 PIAEVLVSDGFVVRLVNVL-NCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKML-DGKAVEEKESAAKALSTL 469 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~A~~aL~~L 469 (561)
.+ ...|+.|++.+ .+.+..++..|+.+|..+...++ ..++.++.++ ++.++.+|..|+.+|..+
T Consensus 574 Gn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 574 GN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp CC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22 13467677755 45577899999999998875321 2466666644 478999999999999998
Q ss_pred hccccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc
Q 008560 470 MLYAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV 513 (561)
Q Consensus 470 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La 513 (561)
+...++.+ .+..|..++.... ...++.|+-+|..+.
T Consensus 640 ~aGn~~~~-------aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 640 CAGKGLQS-------AIDVLDPLTKDPV-DFVRQAAMIALSMIL 675 (963)
T ss_dssp TSSSCCHH-------HHHHHHHHHTCSS-HHHHHHHHHHHHHHS
T ss_pred ccCCCcHH-------HHHHHHHHccCCC-HHHHHHHHHHHHHHh
Confidence 86555432 3445556665433 234566777777664
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.05 E-value=0.00024 Score=71.55 Aligned_cols=307 Identities=13% Similarity=0.064 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHH
Q 008560 163 SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIR 242 (561)
Q Consensus 163 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~ 242 (561)
++..+..++.++..+....+..-.. .-....+..++++.+++...+.-..-.+..++...+.. + = ++..|.+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~-e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---L--v~Nsl~k 111 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTT-EATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---I--VTSSLTK 111 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---G--GHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchh-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---H--HHHHHHh
Confidence 4444556777777766544332111 11233455778999999999888888888887653221 1 2 7888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHH
Q 008560 243 VLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVL 322 (561)
Q Consensus 243 lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~L 322 (561)
=++++++.+|..|.++|.++...+ ..+ ...+.+...+.+.+|.+++.|+-+..+|.....- ++ .+.+..+
T Consensus 112 Dl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l 181 (355)
T 3tjz_B 112 DMTGKEDSYRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEA 181 (355)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHH
T ss_pred hcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHH
Confidence 899999999999999999996653 111 1455677778899999999999999999765421 23 3678888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC--CHHHHHHHHHHHHHhhcChhhHHHHHhc
Q 008560 323 LGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS--AVKSLEVAVELLSQLASCLPIAEVLVSD 400 (561)
Q Consensus 323 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~--~~~~~e~a~~aL~~L~~~~~~~~~l~~~ 400 (561)
-+++.+.+..++.+|+.+|..+...+.. .+..|+..+..+. ++-.+-.-++.+..++..++. -...
T Consensus 182 ~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~ 249 (355)
T 3tjz_B 182 QEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDS 249 (355)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHH
Confidence 9999999999999999999999886632 2344454444421 233443344444344432100 0123
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHh
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILR 480 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~ 480 (561)
..++.+...|++.++.+.-+|+.++..+...+. ... ..++..|..++.+.++.+|-.|...|..+....++ .+
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---~v 322 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---AV 322 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---HH
Confidence 566777778899999999999999998865221 111 23467777888888889999888777777654332 22
Q ss_pred hcCCCHHHHHHhccCCccchhhHHHHHHH
Q 008560 481 KDERGIVTVVQLLDPLIQNLDKKYPVAIL 509 (561)
Q Consensus 481 ~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L 509 (561)
+. .-..+..++..++.+. ..+|+..|
T Consensus 323 ~~--~n~~ie~li~d~n~sI-~t~Aittl 348 (355)
T 3tjz_B 323 TA--CNLDLENLVTDANRSI-ATLAITTL 348 (355)
T ss_dssp -----------------------------
T ss_pred HH--HHHHHHHHccCCcHhH-HHHHHHHh
Confidence 22 3344666776544333 23344443
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.04 E-value=0.0015 Score=73.18 Aligned_cols=259 Identities=15% Similarity=0.029 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCC--------HHHHHHHHHHHHHHhcCCcchHHHHHh
Q 008560 161 IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSS--------LEMKEKTVASIARVSMVDSSKHVLIAE 232 (561)
Q Consensus 161 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~~~e~a~~~L~~La~~~~~~~~i~~~ 232 (561)
++++..+..|+..|.-+..+... .++..|...|.+.+ +.++..|+..|+....... ++
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~------~e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA------NI 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC------CH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC------CH
Confidence 45566777787777665444321 14667777776544 5677777777777543221 12
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhH
Q 008560 233 GLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKE 311 (561)
Q Consensus 233 g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~ 311 (561)
. +++.|..+|.+.+..+++.|+.+|..+-....+.. ++..|+..+. +.+...++.++..|..+....
T Consensus 472 e--v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---- 539 (963)
T 4ady_A 472 E--VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---- 539 (963)
T ss_dssp H--HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC----
T ss_pred H--HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC----
Confidence 3 78888999988887778888888876633222222 3566666554 446677788888888775443
Q ss_pred HHHhhhhHHHHHHHhh-cCCHHHHHHHHHHHHHhcC--CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 008560 312 NFIEENAVMVLLGLVA-SGTALAQENVFGCLCNLVS--DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA 388 (561)
Q Consensus 312 ~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~--~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~ 388 (561)
...++.+++.|. +.++.++..++.++.--.. ++. ..|+.|+..+.++.+..++..|+.+|+.+.
T Consensus 540 ----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 540 ----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp ----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence 346777777776 4566777777766653333 332 257778888877666789999999999987
Q ss_pred cChhhHHHHHhcchHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 008560 389 SCLPIAEVLVSDGFVVRLVN-VLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALS 467 (561)
Q Consensus 389 ~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~ 467 (561)
...+ ..++.++. ++++.++.++..|+.+|..++......+ ++..|..+..+.++.|+..|..+|.
T Consensus 607 ~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 607 LRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5321 34677777 4467889999999999999986432222 2567788888999999999999999
Q ss_pred Hhhcc
Q 008560 468 TLMLY 472 (561)
Q Consensus 468 ~L~~~ 472 (561)
.+...
T Consensus 673 ~Ig~g 677 (963)
T 4ady_A 673 MILIQ 677 (963)
T ss_dssp HHSTT
T ss_pred HHhcC
Confidence 88753
No 86
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=5.3e-05 Score=72.41 Aligned_cols=180 Identities=15% Similarity=0.042 Sum_probs=134.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCC-CchH-HHHHhcCCHHHHHHHHh-cCChHHHHHHHHHHHHhhCCchhhHHHHh
Q 008560 239 HLIRVLESGSGFAKERACVALQALSFS-KENA-RAIGSRGGISSLLEICQ-AGTPGSQAFAAGVLRNLAGFSEIKENFIE 315 (561)
Q Consensus 239 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~-~~i~~~g~i~~Lv~ll~-~~~~~~~~~A~~aL~nLs~~~~~r~~i~~ 315 (561)
.+...+++.+...|..|+..|..+... ++.. ..+ ...++.|...+. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 467788888999999999999988764 2211 001 234777888884 88999999999999999853211111122
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-C-hh-
Q 008560 316 ENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-C-LP- 392 (561)
Q Consensus 316 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~-~~- 392 (561)
...++.+++.+.+....++..+..+|.++..... . ...++.+...+++.+ +.+++.++..|..+.. + ++
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCC
Confidence 4588999999999999999999999999977532 1 125677788887654 5999999999999654 3 33
Q ss_pred -hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 393 -IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 393 -~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
....+ ..+++.|+..|.+.+.+++..|..++..++.
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 2578999999999999999999999999874
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.98 E-value=0.0002 Score=66.33 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=139.0
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Chhh
Q 008560 315 EENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPI 393 (561)
Q Consensus 315 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~ 393 (561)
..+.+..|.+++.+.++.++.+++.+|.++....+..-+...-...++.+++++.+.+ .++.-.|+++|..|-. .|-.
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCC
Confidence 4568999999999999999999999999998764333344444567899999997655 4899999999999885 3333
Q ss_pred HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 394 AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 394 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
-+.+. ..+..+..++.++++-.+++|+..+..+--....+ +++..+..++.+++.++|.+|..+|.+++...
T Consensus 110 ~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 110 SKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 22221 35678888889999999999999999983211122 23567788889999999999999999999876
Q ss_pred cchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCch
Q 008560 474 GNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRK 517 (561)
Q Consensus 474 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~ 517 (561)
.+...+.. -+..+-.+|.+.++ ...+.|+.+|..+.+.+-
T Consensus 182 ~D~~i~~~---I~~eI~elL~~eD~-~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 182 ADSGHLTL---ILDEIPSLLQNDNE-FIVELALDVLEKALSFPL 221 (265)
T ss_dssp SSCCCGGG---TTTTHHHHHTCSCH-HHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHH---HHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCcc
Confidence 65554422 33334456666533 446779999888875443
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.91 E-value=4.1e-07 Score=70.88 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=57.8
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKS 131 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN 131 (561)
+.|..|.||||.++|.+ ||...-|++| .+..|.+|+..+..+|| +...++. ..+++||
T Consensus 4 ~~~~~~~C~IC~~~~~~----------Pv~~~CgH~f---------c~~Ci~~~~~~~~~~CP--~C~~~~~-~~~l~~n 61 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD----------PVIVSTGQTY---------ERSSIQKWLDAGHKTCP--KSQETLL-HAGLTPN 61 (78)
T ss_dssp CCSSSSSCTTTSCCCSS----------EEEETTTEEE---------EHHHHHHHHTTTCCBCT--TTCCBCS-SCCCEEC
T ss_pred CCcccCCCCCccccccC----------CEEcCCCCee---------cHHHHHHHHHHCcCCCC--CCcCCCC-hhhCccC
Confidence 46788999999999996 5777778999 99999999998899999 8888876 4579999
Q ss_pred ccccccccc
Q 008560 132 GVLQDGVVS 140 (561)
Q Consensus 132 ~tLr~li~~ 140 (561)
+.|+.+|+.
T Consensus 62 ~~l~~~i~~ 70 (78)
T 1t1h_A 62 YVLKSLIAL 70 (78)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 89
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=2.4e-06 Score=73.62 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=86.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLI 230 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~ 230 (561)
.++.++..|+++++..|..|+..|..+. ...++.|+.+|+++++.++..|+.+|..+..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhC------------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 4566777777777777777766554331 1237889999999999999999999987752
Q ss_pred HhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 231 AEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 231 ~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
.. +++.|+..|++.++.+|..|+++|..+.. ..+++.|+.++++.++.++..|+.+|.+
T Consensus 72 -~~--a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -ER--AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -HH--HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -HH--HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 45 78999999999999999999999988742 2367889999988888888888888754
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.85 E-value=0.00038 Score=68.41 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=130.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 008560 320 MVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVS 399 (561)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~ 399 (561)
..+++-|.+.+...+..++.-|..+-..|..+-.++++.+|+..|+++....+ ...+..++.++.+|-.+..+...+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccchhC
Confidence 34455566666777777888888755566678899999999999999998875 58999999999999999999988887
Q ss_pred c-chHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHh--------CC--ChHHHHHhcc---CCCHHHHHHHHH
Q 008560 400 D-GFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGE--------CG--CIGPLIKMLD---GKAVEEKESAAK 464 (561)
Q Consensus 400 ~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~--------~g--~i~~Lv~ll~---~~~~~v~~~A~~ 464 (561)
+ .+|.++..++.+....+.+.|..+|..++. ++.+...+.+ .| -+..|+.+|+ +.+.+++.+|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 6 789999999998889999999999999986 3323322221 12 3789999997 678889999888
Q ss_pred HHHHhhccccchh---hHhh--cCCCHHHHHH-hccC
Q 008560 465 ALSTLMLYAGNRK---ILRK--DERGIVTVVQ-LLDP 495 (561)
Q Consensus 465 aL~~L~~~~~~~~---~~~~--~~~~i~~Lv~-lL~~ 495 (561)
++-.+....++++ .+.. +..|+..+++ .|..
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 8777765544433 3321 2356655333 3443
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.82 E-value=0.0087 Score=53.26 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=139.1
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-Chh
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLP 392 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~ 392 (561)
.+...+..++.+|.++--.++.+|+..+.+++..-++....+ +..|+-+++.+..........++++.++. .|+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 466789999999998888999999999999998877644433 34566666666555666777888999886 665
Q ss_pred hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 393 IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 393 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
... +.+|.+..=.+-+++.++.+...+|..++. +|+....+ +..+..|+.+++..-+..|... +..
T Consensus 104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnF---i~a 170 (253)
T 2db0_A 104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNF---IEA 170 (253)
T ss_dssp HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHH---HHT
T ss_pred HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHH---HHH
Confidence 432 456777777788899999999999999987 67665554 5667888888886666655444 444
Q ss_pred cccchhhHhhcCCCHHHHHHhccCCccchhhHHHHHHHHHhc-CCchHHHHH
Q 008560 472 YAGNRKILRKDERGIVTVVQLLDPLIQNLDKKYPVAILAALV-HCRKCRKQM 522 (561)
Q Consensus 472 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La-~~~~~r~~i 522 (561)
...|.-..+. --+|.|+.+|+..+. ..+-.++-+|.+++ .++..|+.+
T Consensus 171 lGen~~~yv~--PfLprL~aLL~D~de-iVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 171 MGENSFKYVN--PFLPRIINLLHDGDE-IVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp CCTTTHHHHG--GGHHHHHGGGGCSSH-HHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HhccCccccC--cchHHHHHHHcCcch-hhhHHHHHHHHHHHHcCHHHHHHH
Confidence 4455544443 378999999987544 45667999999998 677777664
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.82 E-value=0.0018 Score=63.69 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=132.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-hhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 008560 280 SLLEICQAGTPGSQAFAAGVLRN-LAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVRE 358 (561)
Q Consensus 280 ~Lv~ll~~~~~~~~~~A~~aL~n-Ls~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~ 358 (561)
.+++-+.+++...++.++--|.. +..+.+.-..+++.+++..|++....++...+.+++.+|.+|-......-..+-..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34445556677778888888887 66677899999999999999999999999999999999999988755433333355
Q ss_pred CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhc----------chHHHHHHHhc---CCCHHHHHHHHHH
Q 008560 359 GGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSD----------GFVVRLVNVLN---CGVLSVRIAAARA 424 (561)
Q Consensus 359 g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~----------~~i~~Lv~lL~---~~~~~~~~~A~~a 424 (561)
..|..+..++.+ .+..+...|+.+|..++. ++.+...+.+. .....|+.+|. +.+.+++.+|...
T Consensus 202 ~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 678889999885 557899999999999997 44444433332 12779999997 6788999999877
Q ss_pred HHHHcC---CHH----HHHHHHhCCChHHHHHhccCC--CHHHHH
Q 008560 425 VSMLGI---NSK----ARKEMGECGCIGPLIKMLDGK--AVEEKE 460 (561)
Q Consensus 425 L~~L~~---~~~----~~~~i~~~g~i~~Lv~ll~~~--~~~v~~ 460 (561)
+-.+.. +.+ ....+-+.|.-..+...+... +++.++
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 777654 233 334455566666677767643 445544
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.58 E-value=0.0027 Score=63.84 Aligned_cols=274 Identities=12% Similarity=0.055 Sum_probs=152.1
Q ss_pred HhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHH
Q 008560 150 AESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVL 229 (561)
Q Consensus 150 ~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i 229 (561)
....+.++.+++.+.+.|+-.--.+..++...++.- =++..|.+=+.++++-++-.|+++|+++...+ +
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m 136 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-----M 136 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----T
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----H
Confidence 344556667788888887776666666666533311 24666777788899999999999999997543 1
Q ss_pred HHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchh
Q 008560 230 IAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEI 309 (561)
Q Consensus 230 ~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~ 309 (561)
-+. ..+.+-+.|.+.++.+|..|+.+...|..... +. . .+.+..+-+++.+.++.++..|..+|+.+...+.
T Consensus 137 -~~~--l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~- 208 (355)
T 3tjz_B 137 -LQA--IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR- 208 (355)
T ss_dssp -HHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-
T ss_pred -HHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-
Confidence 123 67778888889999999999999999976532 22 2 2588899999999999999999999999986541
Q ss_pred hHHHHhhhhHHHHHHHhhcC---CHHHHHHHHHHHHHhcCCC-hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHH
Q 008560 310 KENFIEENAVMVLLGLVASG---TALAQENVFGCLCNLVSDD-ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLS 385 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~ 385 (561)
.++..|+..+..+ ++-.+..-+..+..++..+ +. .....++.+...|++.+ +.+...|+++|.
T Consensus 209 -------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~-~aVvyEa~k~I~ 275 (355)
T 3tjz_B 209 -------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKH-EMVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSS-HHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCC-hHHHHHHHHHHH
Confidence 2455556666543 2333443444444444443 21 12234555555566544 478888888888
Q ss_pred HhhcChhhHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHH
Q 008560 386 QLASCLPIAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI-NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAK 464 (561)
Q Consensus 386 ~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 464 (561)
.+...+.. .. ..++..|..+|.+.++.++-.|...|..+.. +|+... .+-..+..++.+++..+...|..
T Consensus 276 ~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 276 NLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp C---------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred hccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHHHH
Confidence 87653221 11 2345666677888888899999888888875 333221 13345566666666555554443
No 94
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0017 Score=62.24 Aligned_cols=188 Identities=10% Similarity=-0.014 Sum_probs=129.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hcCC-CchHHHHHh-cCCHHHHHHHH-hcCChHHHHHHHHHHHHhhCCch-hhHH-H
Q 008560 240 LIRVLESGSGFAKERACVALQA-LSFS-KENARAIGS-RGGISSLLEIC-QAGTPGSQAFAAGVLRNLAGFSE-IKEN-F 313 (561)
Q Consensus 240 Lv~lL~~~~~~~~~~aa~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~ll-~~~~~~~~~~A~~aL~nLs~~~~-~r~~-i 313 (561)
+-..+++.++.-|..|...|.. +... ++....... ...+..|...+ .+.+..++..|+.+|..++..-. ..-. -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456688899999999999999 8642 221100111 13477788888 67888999999999999984221 1111 1
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHH--HhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-C
Q 008560 314 IEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIV--REGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-C 390 (561)
Q Consensus 314 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~--~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~ 390 (561)
.-.-.++.+++.+.+....++..+..+|..++..-+.. ... -...++.|...+++.+ +.+++.++..|..++. .
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~--~~~~~l~~ll~~l~~~l~~k~-~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL--ASSGRNEDMLKDILEHMKHKT-PQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT--CTTCTTHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc--ccCCcHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHc
Confidence 12347889999999888889988888888776522100 000 0125677788887764 5999999999999985 3
Q ss_pred hh---hHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 391 LP---IAEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 391 ~~---~~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
+. .....+...+++.|.+++.+.+..++..|..++..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 32 12222224689999999999999999999999988873
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.18 E-value=0.041 Score=62.41 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=165.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC--Ccc
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDK---NVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMV--DSS 225 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~---~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~--~~~ 225 (561)
.+..+...+...... ..|+..+..++..... .--.++ +.++.++..+.+....+++.|-.++..+... +..
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 344455555433222 6777777777754321 112222 6788888888888889998888777766532 222
Q ss_pred hHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 226 KHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 226 ~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
. .. .++.|+..|+++ ....+..|..++..|+.... ..++. ...||.+-+.+-+-.+++++.|..++..
T Consensus 131 ~-----~~--~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~ 201 (986)
T 2iw3_A 131 I-----KA--LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTK 201 (986)
T ss_dssp H-----HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred H-----HH--HHHHHHHHhccccchHHHHHHHHHHHHHHHHhH--HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHH
Confidence 1 34 789999999876 68999999999999987542 33333 4567777777778889999999999999
Q ss_pred hhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHH
Q 008560 303 LAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVE 382 (561)
Q Consensus 303 Ls~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~ 382 (561)
+|..-+|+.- +..+|.|++.+.+++. ...++..|..-++..+---..+ .=.+|.|.+-|.. .+...++.++-
T Consensus 202 ~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~-~~~~~~r~~~~ 273 (986)
T 2iw3_A 202 ATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNE-RETGIKRKSAV 273 (986)
T ss_dssp HGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTS-SSHHHHHHHHH
T ss_pred HHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhcc-CcchhheeeEE
Confidence 9976555544 4678999999987754 4445555555555432100000 0023444444543 33478899999
Q ss_pred HHHHhhc---ChhhHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHHc
Q 008560 383 LLSQLAS---CLPIAEVLVSDGFVVRLVNVLNC-GVLSVRIAAARAVSMLG 429 (561)
Q Consensus 383 aL~~L~~---~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~ 429 (561)
++.|+|+ +|.....+. ...+|.|-+.... .++++++.|..++..|-
T Consensus 274 ~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 9999996 443333322 2344555444433 46899998888877773
No 96
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.13 E-value=1.5e-05 Score=75.49 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=53.2
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHh-hhcCCCCCCCcchhhhhHHHHHHHhhh-hhcchhHHHh--ccCCCCCccc
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQ-KCQGVSLTEGKLKTQSDIDSVLAKLDR-HVRDGDVLIK--SGVLQDGDVL 128 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~-~c~~~~y~~g~l~~~sd~~~i~~~l~~-~~~~cp~l~t--~~~l~~~~~l 128 (561)
....|.||||+++|.+ ||+ ...|++| ++.+|.+|+.. +..+|| +| ...+. ..+|
T Consensus 178 ~~~el~CPIcl~~f~D----------PVts~~CGHsF---------cR~cI~~~~~~~~~~~CP--vtGCr~~l~-~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYEA----------PLISRKCNHVF---------DRDGIQNYLQGYTTRDCP--QAACSQVVS-MRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCSS----------EEEESSSCCEE---------EHHHHHHHSTTCSCEECS--GGGCSCEEC-GGGE
T ss_pred CceeeECcCccCcccC----------CeeeCCCCCcc---------cHHHHHHHHHhCCCCCCC--cccccCcCc-hhhC
Confidence 3466999999999996 686 3668999 99999999976 467999 74 36665 5689
Q ss_pred cccccccccccc
Q 008560 129 IKSGVLQDGVVS 140 (561)
Q Consensus 129 ipN~tLr~li~~ 140 (561)
+||+.|++++..
T Consensus 236 ~pN~~L~~lve~ 247 (267)
T 3htk_C 236 VRDPIMELRCKI 247 (267)
T ss_dssp EECHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 999999887644
No 97
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.97 E-value=0.083 Score=60.70 Aligned_cols=308 Identities=12% Similarity=0.049 Sum_probs=164.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc------hhhHHHH--hcCChHHHHHh-------hcCCCH---------
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDD------KNVVIAV--AQGVVPVLVKL-------MDSSSL--------- 206 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~------~~~~~i~--~~g~v~~Lv~l-------L~~~~~--------- 206 (561)
.++.++..+++++...+..++..+..++++.. +.+..+. -....+.++.+ +..+..
T Consensus 124 ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 203 (960)
T 1wa5_C 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILF 203 (960)
T ss_dssp HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 57778888888777778888888888876321 1121111 11234444443 333321
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHH--hchhhHHHHHHHHhcC------C---------HHHHHHHHHHHHHhcCCCchH
Q 008560 207 EMKEKTVASIARVSMVDSSKHVLIA--EGLLLLNHLIRVLESG------S---------GFAKERACVALQALSFSKENA 269 (561)
Q Consensus 207 ~~~e~a~~~L~~La~~~~~~~~i~~--~g~~~i~~Lv~lL~~~------~---------~~~~~~aa~~L~~Ls~~~~~~ 269 (561)
.+...++.++..+...+-. ..+.+ .. .++.+.++|... + .+++..++.+|..+......
T Consensus 204 ~~~~~~~k~~~~l~~~~~~-~~~~~~~~~--~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~- 279 (960)
T 1wa5_C 204 DVLLVLIKLYYDFNCQDIP-EFFEDNIQV--GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYED- 279 (960)
T ss_dssp HHHHHHHHHHHHHHSSCCC-HHHHHTHHH--HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHhhccch-HHHHHHHHH--HHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2223355666665433221 11211 22 455556666431 1 24677788888877653221
Q ss_pred HHHHh--cCCHHHHHHHHhc-----CChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHH-----HHhh----c-----
Q 008560 270 RAIGS--RGGISSLLEICQA-----GTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLL-----GLVA----S----- 328 (561)
Q Consensus 270 ~~i~~--~g~i~~Lv~ll~~-----~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv-----~lL~----~----- 328 (561)
.+.. ...++.....+.+ .+......++..+..++..+..+..+.....++.++ ..+. +
T Consensus 280 -~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~ 358 (960)
T 1wa5_C 280 -VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFE 358 (960)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHh
Confidence 1111 1234444555542 345667788888888776544333221123333333 3331 0
Q ss_pred CC--------------HHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-----CCCHHHHHHHHHHHHHhhc
Q 008560 329 GT--------------ALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-----VSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 329 ~~--------------~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-----~~~~~~~e~a~~aL~~L~~ 389 (561)
++ ...+..|..+|..++...+ ..+. .-.++.+...+.. ..+...++.|+.+++.++.
T Consensus 359 ~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~ 434 (960)
T 1wa5_C 359 DDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434 (960)
T ss_dssp TCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHB
T ss_pred cCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Confidence 01 1345566666666655432 1111 1122233333331 2335789999999999974
Q ss_pred Ch---h-hHHHHHhc-chHH----HHHHHhcCC---CHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCC
Q 008560 390 CL---P-IAEVLVSD-GFVV----RLVNVLNCG---VLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKA 455 (561)
Q Consensus 390 ~~---~-~~~~l~~~-~~i~----~Lv~lL~~~---~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~ 455 (561)
.. . +....... .+.+ .++..|.+. ++.++..|++++..++. .+++... .++.++..+.+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~ 509 (960)
T 1wa5_C 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDE 509 (960)
T ss_dssp SSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSC
T ss_pred HhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCC
Confidence 21 1 10000000 2222 233445555 78999999999999986 3333332 3678888888888
Q ss_pred HHHHHHHHHHHHHhhcc
Q 008560 456 VEEKESAAKALSTLMLY 472 (561)
Q Consensus 456 ~~v~~~A~~aL~~L~~~ 472 (561)
..++..|+.+|.+++.+
T Consensus 510 ~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.077 Score=51.32 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=122.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchhh--HHHH-hc-CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---c-ch
Q 008560 155 LITRLQIGSAESKNSAMDSLLGLLQEDDKNV--VIAV-AQ-GVVPVLVKLMDSSSLEMKEKTVASIARVSMVD---S-SK 226 (561)
Q Consensus 155 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~--~~i~-~~-g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~---~-~~ 226 (561)
+-++|.+.++..|.+|+..|..+....+... .... .- ..++.+...+.+.+..+++.++.++..+...- . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999998876543211 1111 12 34556667888999999999999998887531 1 12
Q ss_pred HHH--HHhchhhHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHh
Q 008560 227 HVL--IAEGLLLLNHLIR-VLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNL 303 (561)
Q Consensus 227 ~~i--~~~g~~~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nL 303 (561)
... .-.. .++.|+. .|.++...++..+..++..+......... .++.++..+.+.+|..+..++..|.++
T Consensus 94 ~~~~~~~~~--~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLIST--WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHH--HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 221 1234 6677765 46777888898888888777543221111 245566667888999999998888877
Q ss_pred hCCc--hh-hHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 008560 304 AGFS--EI-KENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 304 s~~~--~~-r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 346 (561)
.... .. -....-..+++.+..++.+.+..+|..|..++..+-.
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 5321 11 1111112355677888999999999999999888754
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.18 E-value=0.015 Score=60.61 Aligned_cols=240 Identities=12% Similarity=0.138 Sum_probs=153.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh-----cC-----CC---HHHHHHHHHHHH
Q 008560 151 ESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM-----DS-----SS---LEMKEKTVASIA 217 (561)
Q Consensus 151 ~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL-----~~-----~~---~~~~e~a~~~L~ 217 (561)
....|+..|-+..++.|..|+..|+++.+.............. ...++++ +. +| ..+||.++.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5677888899999999999999999998764321110011111 3333332 10 11 468999999999
Q ss_pred HHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHH-hcCCHHHHHHHHhcCChHHHHHH
Q 008560 218 RVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIG-SRGGISSLLEICQAGTPGSQAFA 296 (561)
Q Consensus 218 ~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~A 296 (561)
.+ ..-... .. ++..++..+.....++|..+.-.|..+.. .+. -.++++.++.-|.+.+.+++..|
T Consensus 254 aL-~hLp~e-----~~--IL~qLV~~l~~~~WEVRHGGLLGLKYL~D------LL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP-----ND--IIEQLVGFLDSGDWQVQFSGLIALGYLKE------FVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS-----CC--HHHHHTTGGGCSCHHHHHHHHHHHHHTGG------GCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh-----HH--HHHHHHhhcCCCCeeehhhhHHHHHHHHH------HHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 88 542221 45 77777777788899999999999999911 111 24567788888889999999999
Q ss_pred HHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCH--HHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCH
Q 008560 297 AGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTA--LAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAV 374 (561)
Q Consensus 297 ~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~ 374 (561)
+.+|.-++ .++. -..++..+.+.|.+.++ ......+..|..|+...... ......+|.|..+++..-.
T Consensus 320 AetLiPIA-~p~~-----l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtIT- 389 (800)
T 3oc3_A 320 AELLCHFP-ITDS-----LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVP- 389 (800)
T ss_dssp HHHHTTSC-CSST-----HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSH-
T ss_pred HHHhhhhc-chhh-----HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcH-
Confidence 99999888 2211 12355566666654332 33444455666665533210 0112457777777777654
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHH-HhcCCCHHHHHHHHHHH
Q 008560 375 KSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVN-VLNCGVLSVRIAAARAV 425 (561)
Q Consensus 375 ~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~~~~~A~~aL 425 (561)
.+|..++.+|..+.. ..++..+.+ +|-..+.++++.+..+-
T Consensus 390 SVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 390 EVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 899999999988771 124444444 45566778777776544
No 100
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.07 E-value=0.00011 Score=62.41 Aligned_cols=90 Identities=14% Similarity=0.022 Sum_probs=63.3
Q ss_pred cccchhhhHHHHHHhhhH-------hhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhH
Q 008560 27 KHFKGKWVIVKTKLNDLE-------TQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDI 99 (561)
Q Consensus 27 ~~f~~~~~~~~~~~~~l~-------~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~ 99 (561)
+.-...|.++...+..-. ..+.. .+..+.||||.+++.+ |++..-|++| -+
T Consensus 19 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~ 76 (124)
T 3fl2_A 19 KSNAKLWNEVLASLKDRPASGSPFQLFLSK---VEETFQCICCQELVFR----------PITTVCQHNV---------CK 76 (124)
T ss_dssp GGGHHHHHHHHHC---CCSSSCHHHHHHHH---HHHHTBCTTTSSBCSS----------EEECTTSCEE---------EH
T ss_pred HhhHHHHHHHHHHhhcccchhhhHHHHHHh---CccCCCCCcCChHHcC----------cEEeeCCCcc---------cH
Confidence 444566777777665321 22222 2245899999999996 5666668999 88
Q ss_pred HHHHHHhhhhhcchhHHHhccCCCCCccccccccccccccc
Q 008560 100 DSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVLQDGVVS 140 (561)
Q Consensus 100 ~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tLr~li~~ 140 (561)
.-|..|+..+..+|| +-..++.....+.||+.|+.++..
T Consensus 77 ~Ci~~~~~~~~~~CP--~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 77 DCLDRSFRAQVFSCP--ACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HHHHHHHHTTCCBCT--TTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHhHCcCCCC--CCCccCCCCCCCCCCHHHHHHHHH
Confidence 999999997777999 777777654678889888776643
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.88 E-value=0.22 Score=47.69 Aligned_cols=179 Identities=10% Similarity=0.035 Sum_probs=119.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhc---CCcchHH
Q 008560 153 RNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQG-VVPVLVKLMDSSSLEMKEKTVASIARVSM---VDSSKHV 228 (561)
Q Consensus 153 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g-~v~~Lv~lL~~~~~~~~e~a~~~L~~La~---~~~~~~~ 228 (561)
.++...+.+.+...+.+|+..|......+++. .+...+ .+..+.--+.++++.+...++.+|..+.. ..+++-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~--~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRS--LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH--HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 35667777788888999999998877654422 121111 23333322336688888888888777632 1222211
Q ss_pred HHH-hchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc
Q 008560 229 LIA-EGLLLLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS 307 (561)
Q Consensus 229 i~~-~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~ 307 (561)
-.+ .- .+|.|+.=+.++...+|..+-.++..+.... .....++.+++-+++.+...+..++..+..+-...
T Consensus 127 ~~ea~~--~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSA--FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 111 23 7888888888888889998888887774321 11225667777788889999999998888875432
Q ss_pred hhhHHHHhhhhH---HHHHHHhhcCCHHHHHHHHHHHHHhc
Q 008560 308 EIKENFIEENAV---MVLLGLVASGTALAQENVFGCLCNLV 345 (561)
Q Consensus 308 ~~r~~i~~~g~v---~~Lv~lL~~~~~~~~~~a~~~L~~L~ 345 (561)
... ...++ +.+.+++.+.+..++..|+.++..+-
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 211 24577 99999999999999999999988664
No 102
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.82 E-value=0.00049 Score=54.97 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCcchhhhhHHHHHHHhhh-hhcchhHHHhccCCCCCcccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKC-QGVSLTEGKLKTQSDIDSVLAKLDR-HVRDGDVLIKSGVLQDGDVLI 129 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c-~~~~y~~g~l~~~sd~~~i~~~l~~-~~~~cp~l~t~~~l~~~~~li 129 (561)
..+..+.||||.++|.+ |++.. -|++| -+.-|..|+.. +..+|| +-..++.....+.
T Consensus 9 ~~~~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~~~~~~CP--~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD----------AVVIPCCGNSY---------CDECIRTALLESDEHTCP--TCHQNDVSPDALI 67 (92)
T ss_dssp CCCTTTEETTTTEECSS----------CEECTTTCCEE---------CHHHHHHHHHHCTTCCCT--TTCCSSCCTTSCE
T ss_pred cCCcCCCCCCCChhhcC----------ceECCCCCCHH---------HHHHHHHHHHhcCCCcCc--CCCCcCCCccccC
Confidence 45678999999999996 56665 68999 88999999975 457999 7777764456788
Q ss_pred ccccccccccc
Q 008560 130 KSGVLQDGVVS 140 (561)
Q Consensus 130 pN~tLr~li~~ 140 (561)
||+.|+.++..
T Consensus 68 ~n~~l~~~i~~ 78 (92)
T 3ztg_A 68 ANKFLRQAVNN 78 (92)
T ss_dssp ECHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 89888776543
No 103
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.82 E-value=0.73 Score=43.30 Aligned_cols=172 Identities=16% Similarity=0.152 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCC-----HHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHH
Q 008560 293 QAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGT-----ALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKS 366 (561)
Q Consensus 293 ~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~ 366 (561)
...|...|..++++++.|..+.+++..--|--+|+..+ +.++..+++.+..+... +++.-..+.+...++..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 35677778888999999999999988777777776443 35788899999998864 4556667778899999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhc--------chHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 008560 367 YWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSD--------GFVVRLVN-VLNCGVLSVRIAAARAVSMLGINSKARKE 437 (561)
Q Consensus 367 lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~--------~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 437 (561)
.++.++. -.+..|.-++..+-.++.|...++.. .++..+|. +....++.+-+..+++-.+|+.++..++.
T Consensus 153 ime~Gse-lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 153 IMESGSE-LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHSCH-HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHhhccH-HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999885 78888999999888888887777653 12333444 33567889999999999999999988888
Q ss_pred HHhC-------CChHHHHHhccCCCHHHHHHHHHHHHHh
Q 008560 438 MGEC-------GCIGPLIKMLDGKAVEEKESAAKALSTL 469 (561)
Q Consensus 438 i~~~-------g~i~~Lv~ll~~~~~~v~~~A~~aL~~L 469 (561)
+.+. |....+ + .+++.+++.-.+++.|+
T Consensus 232 L~~~LP~~Lrd~tf~~~---l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 232 LRQCLPDQLKDTTFAQV---L-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHSCGGGTSSTTHHH---H-TSCHHHHHHHHHHHHHS
T ss_pred HHHhCcHHhhChHHHHH---H-hcCHHHHHHHHHHHHhc
Confidence 7542 222222 2 25667777666666554
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.79 E-value=0.27 Score=46.17 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCC-----hHHHHHHHHHHHHhhCCc--hhhHHHHhhhhHHHHHHH
Q 008560 253 ERACVALQALSFSKENARAIGSRGGISSLLEICQAGT-----PGSQAFAAGVLRNLAGFS--EIKENFIEENAVMVLLGL 325 (561)
Q Consensus 253 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~A~~aL~nLs~~~--~~r~~i~~~g~v~~Lv~l 325 (561)
.+|...|+.++.+++.+..+.+....--|.-.+...+ ...+-.+++++..|...+ ++-..+.+.+.+|..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 4666778889999999999999877767777776554 245788999999998644 677777889999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhcCCChHHHH------HH-HHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 008560 326 VASGTALAQENVFGCLCNLVSDDESLKL------LI-VREGGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLV 398 (561)
Q Consensus 326 L~~~~~~~~~~a~~~L~~L~~~~~~~r~------~~-~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~ 398 (561)
++.|++-.+..|.-++..+-.++.+..- .+ .-..++..++.-+....+++...+.+++-..|+.++..++.+.
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999887754321 11 1122445555555556677999999999999999999888876
Q ss_pred h
Q 008560 399 S 399 (561)
Q Consensus 399 ~ 399 (561)
+
T Consensus 234 ~ 234 (268)
T 2fv2_A 234 Q 234 (268)
T ss_dssp H
T ss_pred H
Confidence 5
No 105
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.19 E-value=0.00053 Score=60.28 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=52.9
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccccc
Q 008560 54 PAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGV 133 (561)
Q Consensus 54 p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~t 133 (561)
+..+.||||.+++.+ ||....|++| =+.-|.+|+..+..+|| +-..++.....+.||..
T Consensus 76 ~~~~~C~IC~~~~~~----------pv~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~~~~~l~~n~~ 134 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ----------PVTTECFHNV---------CKDCLQRSFKAQVFSCP--ACRHDLGQNYIMIPNEI 134 (150)
T ss_dssp HHHTBCTTTSSBCSS----------EEECTTSCEE---------EHHHHHHHHHTTCCBCT--TTCCBCCTTCCCCBCHH
T ss_pred ccCCEeecCChhhcC----------CEEcCCCCch---------hHHHHHHHHHhCCCcCC--CCCccCCCCCCCCCCHH
Confidence 356899999999996 4666668999 88999999998777999 87777765447888888
Q ss_pred ccccccc
Q 008560 134 LQDGVVS 140 (561)
Q Consensus 134 Lr~li~~ 140 (561)
|+.++..
T Consensus 135 l~~lv~~ 141 (150)
T 1z6u_A 135 LQTLLDL 141 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776643
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.08 E-value=0.43 Score=46.65 Aligned_cols=136 Identities=10% Similarity=-0.031 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHHhhCCchhhHHHHhh--hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHH
Q 008560 289 TPGSQAFAAGVLRNLAGFSEIKENFIEE--NAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKS 366 (561)
Q Consensus 289 ~~~~~~~A~~aL~nLs~~~~~r~~i~~~--g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~ 366 (561)
.+..+-.+++++.|+-..+..|..+... .++..+...+.+.+..++..++.++.|++...-..+..=.....+..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4566889999999999988888777642 34445555555567789999999999998632110000001114455556
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhc-chHHHHHHHhcC-CCHHHHHHHHHH
Q 008560 367 YWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSD-GFVVRLVNVLNC-GVLSVRIAAARA 424 (561)
Q Consensus 367 lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~-~~i~~Lv~lL~~-~~~~~~~~A~~a 424 (561)
+++...+.+....++.+|++|...+.....+.+. ++-..+-.+... .+..+.+++..+
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 6666677899999999999999755545555554 444444444443 345666665443
No 107
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.81 E-value=1.3 Score=50.70 Aligned_cols=218 Identities=10% Similarity=0.075 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcchHHHHHh-----chhhH----HHHHHHHhcC---CHHHHHHHHHHHHHhcCCCchHH
Q 008560 203 SSSLEMKEKTVASIARVSMVDSSKHVLIAE-----GLLLL----NHLIRVLESG---SGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 203 ~~~~~~~e~a~~~L~~La~~~~~~~~i~~~-----g~~~i----~~Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
+.+-..++.|+.++..++........-... . .. ..++..|.+. .+.+|..|+++|..++..- ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~--l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN--VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC--HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCccccccccc--HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH
Confidence 345578899999999997532111000000 1 11 2233345555 8999999999999998642 111
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc--------h-hhHHHH--hhhhHHHHHHHhhcCC---H--HHH
Q 008560 271 AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS--------E-IKENFI--EENAVMVLLGLVASGT---A--LAQ 334 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~--------~-~r~~i~--~~g~v~~Lv~lL~~~~---~--~~~ 334 (561)
. -...++.++..+.+.++.++..|+.+|.+++... + .+..+. -...+..|+.++.... . ...
T Consensus 493 -~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 493 -Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp -H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred -H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 1 1235778888888888899999999999998742 1 233332 2457777888887641 1 123
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHhCcHHHHHHhhh----cCCCHHHHHHHHHHHHHhhcC--hhhHHHHHhcchHHHHH
Q 008560 335 ENVFGCLCNLVSDD-ESLKLLIVREGGIGSLKSYWD----SVSAVKSLEVAVELLSQLASC--LPIAEVLVSDGFVVRLV 407 (561)
Q Consensus 335 ~~a~~~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~----~~~~~~~~e~a~~aL~~L~~~--~~~~~~l~~~~~i~~Lv 407 (561)
+.+..+|..++... +.+.. . -...++.|...+. +++++.....++.+|..++.. ++....+ ...+++.+.
T Consensus 571 e~l~~al~~vv~~~~~~~~p-~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~ 647 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQP-L-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-G-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHH
Confidence 45555555543211 11110 0 0113444444443 345556777788888888753 3333333 335667777
Q ss_pred HHhcCCCHHHHHHHHHHHHHH
Q 008560 408 NVLNCGVLSVRIAAARAVSML 428 (561)
Q Consensus 408 ~lL~~~~~~~~~~A~~aL~~L 428 (561)
..|........+.+..++..+
T Consensus 648 ~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 648 TVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHhhhHhhHHHHHHHHHHH
Confidence 777665444444444444333
No 108
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.35 E-value=0.83 Score=44.63 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=103.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhc--hhhHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCchHH
Q 008560 194 VPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEG--LLLLNHLIRVLES-GSGFAKERACVALQALSFSKENAR 270 (561)
Q Consensus 194 v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g--~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~ 270 (561)
+..+.+++.-+. +.+--++..+..+..++.....+.+++ ...+..+...+.. +.+..+..+++++.|+..++..+.
T Consensus 105 l~~l~kil~WP~-~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCPE-DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSCT-TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCCH-HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 455555553222 223334444544444443333333322 1133333344432 456779999999999999887776
Q ss_pred HHHhc--CCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhh-cCCHHHHHHHHHHHHHhcC
Q 008560 271 AIGSR--GGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVA-SGTALAQENVFGCLCNLVS 346 (561)
Q Consensus 271 ~i~~~--g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~ 346 (561)
.+... ..++.+...+.+.+...+.+++..+.|++... ..+..=.....+..+..++. ..+.+....++.+|.++..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 66542 23344444444457778889999999998643 11110001123444445554 3456899999999999998
Q ss_pred CChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHH
Q 008560 347 DDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAV 381 (561)
Q Consensus 347 ~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~ 381 (561)
.+...++.....|.-..+-++.....+.++.+.|-
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence 87765554444454444444444434445554443
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.30 E-value=3.4 Score=40.46 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=145.0
Q ss_pred HHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCc-hhhHHH---HhhhhHHHHHHHhhc--CCHHHHHHHHHHHHHh
Q 008560 271 AIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFS-EIKENF---IEENAVMVLLGLVAS--GTALAQENVFGCLCNL 344 (561)
Q Consensus 271 ~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~-~~r~~i---~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~L 344 (561)
.+..++.+..|+..+..-+-+.++.+..+..++-... +.+.-. +.. - +.++..|-. ++.++-..+...|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~-peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-Q-QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-C-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-C-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 4566788889999998889999999999999887644 222111 111 1 223333322 2335666777777777
Q ss_pred cCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhh-cChhhHHHHHhc---chHHHHHHHhcCCCHHHHHH
Q 008560 345 VSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLA-SCLPIAEVLVSD---GFVVRLVNVLNCGVLSVRIA 420 (561)
Q Consensus 345 ~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~-~~~~~~~~l~~~---~~i~~Lv~lL~~~~~~~~~~ 420 (561)
.... .+.+.+.....+..+.++++.++= ++..-|...+..|- .+.....++.+. .+....-.+|.+++..++..
T Consensus 151 ir~e-~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 151 IRHE-PLAKIILWSEQFYDFFRYVEMSTF-DIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HTSH-HHHHHHHHSGGGGHHHHHTTCSSH-HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhH-HHHHHHhccHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 6654 466666677777888888887553 66667777777765 466666666653 56888888999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHH----hCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhH
Q 008560 421 AARAVSMLGINSKARKEMG----ECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKIL 479 (561)
Q Consensus 421 A~~aL~~L~~~~~~~~~i~----~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 479 (561)
+...|..|-.+..+...|. +..-+..++.+|++++..+|..|-.+......++..-..+
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHH
Confidence 9999999987655554443 3345888899999999999999999998888765444333
No 110
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.29 E-value=4.1 Score=39.92 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=149.3
Q ss_pred HHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-chH----HHHHhcCCHHHHHHHHhc-CChHHHHHHHHHHH
Q 008560 228 VLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSK-ENA----RAIGSRGGISSLLEICQA-GTPGSQAFAAGVLR 301 (561)
Q Consensus 228 ~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~----~~i~~~g~i~~Lv~ll~~-~~~~~~~~A~~aL~ 301 (561)
.+...+ .+..|+..|..=+.+.|..++.+..++-... .++ .-+.. -.+.|..++.. ++++.--.+-..|+
T Consensus 73 ei~~~d--ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR 148 (341)
T 1upk_A 73 ELYNSG--LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHS--HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHhC--HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence 455678 9999999999889999999999998887643 222 22222 22333333332 24556667777888
Q ss_pred HhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhC---cHHHHHHhhhcCCCHHHHH
Q 008560 302 NLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREG---GIGSLKSYWDSVSAVKSLE 378 (561)
Q Consensus 302 nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g---~i~~Lv~lL~~~~~~~~~e 378 (561)
....++...+.+.+.+.+-.+.+.+..++-++...|..++..+-......-......+ .....-+++.+++. -.+.
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY-VTkR 227 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY-VTKR 227 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH-HHHH
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc-hhHH
Confidence 8888888888888888889999999999999999999999988776655555555443 46677778887765 8999
Q ss_pred HHHHHHHHhhcChhhHHHHHh---c-chHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 379 VAVELLSQLASCLPIAEVLVS---D-GFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 379 ~a~~aL~~L~~~~~~~~~l~~---~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
.++..|+.|-..+.+...+.. . .-+..++.+|++.+..+|..|-.+.--+..+
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999999999977766555544 3 5588999999999999999999888777654
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.17 E-value=3.1 Score=47.54 Aligned_cols=290 Identities=11% Similarity=0.085 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh---c--CCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchh
Q 008560 162 GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM---D--SSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLL 235 (561)
Q Consensus 162 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL---~--~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~ 235 (561)
.+...+..|+..+..++..-.+.. ...++.++.++ . ..++.++..++.++..++.. ...... -..
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~-- 546 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPP-- 546 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHH--
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHH--
Confidence 455677778888877765433211 12334444332 2 24789999999999988753 111111 123
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCC-c-hh
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAG--TPGSQAFAAGVLRNLAGF-S-EI 309 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~-~-~~ 309 (561)
+++.|+..|. +.++..|+.++.+++.. ++..+.. ...+..|..++..+ +...+.....++..++.. + +.
T Consensus 547 vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 547 AINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 6777777773 67899999999999843 3333333 23556666777763 466777788888777643 1 33
Q ss_pred hHHHHhhhhHHHHHHHh----hcC--CHHHHHHHHHHHHHhcCCChHH-------H------H--HHHHhCcHHHHHHhh
Q 008560 310 KENFIEENAVMVLLGLV----ASG--TALAQENVFGCLCNLVSDDESL-------K------L--LIVREGGIGSLKSYW 368 (561)
Q Consensus 310 r~~i~~~g~v~~Lv~lL----~~~--~~~~~~~a~~~L~~L~~~~~~~-------r------~--~~~~~g~i~~Lv~lL 368 (561)
+.... ...++.++..+ ... +.+.+.....++..|+..-... . . .-.....++.+..++
T Consensus 622 ~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 700 (971)
T 2x1g_F 622 IPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA 700 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence 22222 23444444433 222 2333344444444443210000 0 0 112235677777777
Q ss_pred hcC-CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhc----CCCHHHHHHHHHHHHHHcC----CHHHHHHHH
Q 008560 369 DSV-SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLN----CGVLSVRIAAARAVSMLGI----NSKARKEMG 439 (561)
Q Consensus 369 ~~~-~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~----~~~~~~~~~A~~aL~~L~~----~~~~~~~i~ 439 (561)
... .+..+.+.++.+++.++..-. ..+ ..+++.++..+. .... ..+...+..++. ++.+...+.
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~~~--~~~--~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITNLR--SSF--QPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHH--C----CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHhhh--hhc--cccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHH
Confidence 653 456899999999999875211 011 234566665442 2111 224444444443 222322222
Q ss_pred hC--CChHHHHHhccC-------CCHHHHHHHHHHHHHhhccc
Q 008560 440 EC--GCIGPLIKMLDG-------KAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 440 ~~--g~i~~Lv~ll~~-------~~~~v~~~A~~aL~~L~~~~ 473 (561)
+. ..+.....++.. ..+++++.....+..+..+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~ 816 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKI 816 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhC
Confidence 21 123344444443 25667777777766666443
No 112
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.13 E-value=9.8 Score=43.14 Aligned_cols=295 Identities=11% Similarity=0.092 Sum_probs=152.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHHHhcC-CcchHHHHHhchhh
Q 008560 161 IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM---DSSSLEMKEKTVASIARVSMV-DSSKHVLIAEGLLL 236 (561)
Q Consensus 161 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~~~e~a~~~L~~La~~-~~~~~~i~~~g~~~ 236 (561)
..++..+..++..+..++..-.... ...++.++..+ .++++.++..++.++..++.. .... .. -.. +
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~--v 530 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INS--V 530 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTT--T
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHH--H
Confidence 4466677777777777765432211 12334444433 234688999999999988743 1111 11 134 7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCCHHHHHHHHhcC--ChHHHHHHHHHHHHhhCCc--hhh
Q 008560 237 LNHLIRVLESGSGFAKERACVALQALSFSKENARAIGS--RGGISSLLEICQAG--TPGSQAFAAGVLRNLAGFS--EIK 310 (561)
Q Consensus 237 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~ll~~~--~~~~~~~A~~aL~nLs~~~--~~r 310 (561)
++.++..|.+ +.++..|+.++.+++.. ++..+.. ...+..|..++..+ +...+.....++..++..- +..
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 8888888855 78899999999999853 2222222 12344455556543 4577788888888876532 333
Q ss_pred HHHHhhhhHHHHHHHhh----cC-CHHHHH---HHHHHHHHhcCC----Ch-H--------------HH--HHHHHhCcH
Q 008560 311 ENFIEENAVMVLLGLVA----SG-TALAQE---NVFGCLCNLVSD----DE-S--------------LK--LLIVREGGI 361 (561)
Q Consensus 311 ~~i~~~g~v~~Lv~lL~----~~-~~~~~~---~a~~~L~~L~~~----~~-~--------------~r--~~~~~~g~i 361 (561)
.... ...++.+...+. .. +++.+. ....+|..+... .+ . .+ -.-+....+
T Consensus 607 ~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 607 LKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence 3332 235555555443 22 333333 334444333321 00 0 00 011223455
Q ss_pred HHHHHhhhc-CCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHh----cC-CCHHHHHHHHHHHHHHcCCHHH
Q 008560 362 GSLKSYWDS-VSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVL----NC-GVLSVRIAAARAVSMLGINSKA 434 (561)
Q Consensus 362 ~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL----~~-~~~~~~~~A~~aL~~L~~~~~~ 434 (561)
+.+.+++.. ..+..+.+.++.++..+.. ..+.. ..++++++..+ .. +.+.+-.....++..+..++..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~ 760 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAH 760 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcch
Confidence 666666654 2345788889998888764 21110 13455555433 11 2232222222233322222211
Q ss_pred HHHHHh--CCChHHHHHhcc---CCCHHHHHHHHHHHHHhhcccc
Q 008560 435 RKEMGE--CGCIGPLIKMLD---GKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 435 ~~~i~~--~g~i~~Lv~ll~---~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
...+.+ ...+...+.++. ...+++++.....|..+..+.+
T Consensus 761 ~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~ 805 (963)
T 2x19_B 761 FPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKP 805 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCc
Confidence 111111 112333344443 2468888888888888875433
No 113
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.10 E-value=0.0023 Score=57.17 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=52.3
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGV 133 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~t 133 (561)
..+.||||++.+.+ |+.. ..|++| =+.-|.+|+..+..+|| +-..++.....+.||..
T Consensus 53 ~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~~~~~l~~~~~ 111 (165)
T 2ckl_B 53 SELMCPICLDMLKN----------TMTTKECLHRF---------CADCIITALRSGNKECP--TCRKKLVSKRSLRPDPN 111 (165)
T ss_dssp HHHBCTTTSSBCSS----------EEEETTTCCEE---------EHHHHHHHHHTTCCBCT--TTCCBCCSGGGEEECHH
T ss_pred CCCCCcccChHhhC----------cCEeCCCCChh---------HHHHHHHHHHhCcCCCC--CCCCcCCCcccCCcCHH
Confidence 45799999999996 4665 668999 88999999998899999 77777765567888888
Q ss_pred ccccccc
Q 008560 134 LQDGVVS 140 (561)
Q Consensus 134 Lr~li~~ 140 (561)
|+.+|..
T Consensus 112 l~~~i~~ 118 (165)
T 2ckl_B 112 FDALISK 118 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 114
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=93.85 E-value=0.004 Score=47.84 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=52.0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh------hcchhHHHhccCCCCC
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH------VRDGDVLIKSGVLQDG 125 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~------~~~cp~l~t~~~l~~~ 125 (561)
.....+.||||++.+.+ |+..--|++| =++-|.+|+... ...|| +-..++. .
T Consensus 8 ~~~~~~~C~IC~~~~~~----------p~~l~CgH~f---------C~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~-~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE----------PLSLDCGHSL---------CRACITVSNKEAVTSMGGKSSCP--VCGISYS-F 65 (79)
T ss_dssp CCCCCCEETTTTEECSS----------CCCCSSSCCC---------CHHHHSCCCCCCSSSCCCCCCCS--SSCCCCC-S
T ss_pred hcccCCCCcCCCcccCC----------eeECCCCCHH---------HHHHHHHHHHhcccCCCCCCcCC--CCCCcCC-H
Confidence 34567999999999986 4555567999 788999999863 78999 6677766 4
Q ss_pred cccccccccccccc
Q 008560 126 DVLIKSGVLQDGVV 139 (561)
Q Consensus 126 ~~lipN~tLr~li~ 139 (561)
.++.||+.|+.++.
T Consensus 66 ~~l~~n~~l~~lve 79 (79)
T 2egp_A 66 EHLQANQHLANIVE 79 (79)
T ss_dssp SGGGTCSSSCCCCC
T ss_pred hhCCcCHHHHHhhC
Confidence 57999999988763
No 115
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.60 E-value=0.012 Score=45.68 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=51.1
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh-----hcchhHHHhccCCCCCc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH-----VRDGDVLIKSGVLQDGD 126 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~-----~~~cp~l~t~~~l~~~~ 126 (561)
.....+.||||++.+.++ +..--|++| =+.-|..|+... ...|| +-..++. ..
T Consensus 15 ~~~~~~~C~IC~~~~~~p----------~~~~CgH~f---------C~~Ci~~~~~~~~~~~~~~~CP--~Cr~~~~-~~ 72 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP----------VSADCNHSF---------CRACITLNYESNRNTDGKGNCP--VCRVPYP-FG 72 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC----------EECTTSCCB---------CHHHHHHHHHHSBCTTSCBCCT--TTCCCCC-TT
T ss_pred hCccCCCCcCCChhhCcc----------eeCCCCCHH---------HHHHHHHHHHhccCCCCCCCCC--CCCCcCC-HH
Confidence 344679999999999864 444457889 788999999873 78999 6666766 45
Q ss_pred ccccccccccccc
Q 008560 127 VLIKSGVLQDGVV 139 (561)
Q Consensus 127 ~lipN~tLr~li~ 139 (561)
++.||+.|+.+++
T Consensus 73 ~~~~n~~l~~~ve 85 (85)
T 2ecw_A 73 NLKPNLHVANIVE 85 (85)
T ss_dssp CCEECSCCCSSCC
T ss_pred hCCcCHHHHHhhC
Confidence 7999999988763
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.52 E-value=0.031 Score=53.09 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhh
Q 008560 238 NHLIRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEEN 317 (561)
Q Consensus 238 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g 317 (561)
..+..++++.+..+|..++..| ..+.|..++.+.++.++..++..+ .
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~D~d~~VR~~aA~~l---~------------- 123 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMFDEDREVRITVADRL---P------------- 123 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTTCSCHHHHHHHHHHS---C-------------
T ss_pred HHHHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHcCCCHHHHHHHHHhC---C-------------
Confidence 3455556666777777666431 123455667777777777766632 1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHH
Q 008560 318 AVMVLLGLVASGTALAQENVFG 339 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~ 339 (561)
.+.|..++.+++..++..++.
T Consensus 124 -~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 -LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp -TGGGGGGTTCSSHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 112444556666666666655
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.35 E-value=4.3 Score=41.78 Aligned_cols=150 Identities=19% Similarity=0.092 Sum_probs=97.5
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHH
Q 008560 246 SGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLG 324 (561)
Q Consensus 246 ~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~ 324 (561)
+|+.+.+.-|+..+.....+ ++.+.. ++..++++|.+.+..++..|.+.|..+|.+ ++-. .++.+|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence 57899999999999888765 454443 688999999999999999999999999988 4433 46678999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--ChhhHHHHHhcch
Q 008560 325 LVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CLPIAEVLVSDGF 402 (561)
Q Consensus 325 lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~~~~~~l~~~~~ 402 (561)
+|+.++..-....-.+|..+-..++. +.+..|..-+.++ ++.+++.++..|..=.. -++....=++.-+
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 99988775444444445444443431 3344444444444 35788888887755332 1111111112234
Q ss_pred HHHHHHHhcCCCH
Q 008560 403 VVRLVNVLNCGVL 415 (561)
Q Consensus 403 i~~Lv~lL~~~~~ 415 (561)
+..+-+.|+..+.
T Consensus 179 ~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 179 LTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHTTSCCH
T ss_pred HHHHHHHhccccH
Confidence 4555566655544
No 118
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.16 E-value=3.3 Score=47.46 Aligned_cols=294 Identities=10% Similarity=-0.019 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---cchHHHHHhchhhHH
Q 008560 162 GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVD---SSKHVLIAEGLLLLN 238 (561)
Q Consensus 162 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~---~~~~~i~~~g~~~i~ 238 (561)
.+++.+..++..+......-+ ...++..+.++.+..+|.. +++++.|+.+|..+.... +.+..++..= .+.
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l--~L~ 278 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL--NLN 278 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH--hHH
Confidence 677778889999988887543 2445667888888888875 789999999999886532 2232333221 122
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhcC-------CC-----chHHHHHh--cCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 239 HLIRVLE--SGSGFAKERACVALQALSF-------SK-----ENARAIGS--RGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 239 ~Lv~lL~--~~~~~~~~~aa~~L~~Ls~-------~~-----~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
..+..+. ..+.+..+.-++.+..++. .+ +.+..... .+.++.++..+.+.+.++...+...+..
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222222 3566666555555543321 11 11111111 3568888888888877766555555444
Q ss_pred hhCCch-------hhHHHH--hhhhHHHHHHHhhcCCH----------------HHHHHHHHHHHHhcCCChHHHHHHHH
Q 008560 303 LAGFSE-------IKENFI--EENAVMVLLGLVASGTA----------------LAQENVFGCLCNLVSDDESLKLLIVR 357 (561)
Q Consensus 303 Ls~~~~-------~r~~i~--~~g~v~~Lv~lL~~~~~----------------~~~~~a~~~L~~L~~~~~~~r~~~~~ 357 (561)
+....+ ...... =...++.+++-+.-++. +.|......+..++.-++.
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~------- 431 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSS------- 431 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHH-------
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChH-------
Confidence 332110 111110 11233333333321110 1222222111111111111
Q ss_pred hCcHH----HHHH----hhhc--CCCHHHHHHHHHHHHHhhc-ChhhHHHHHh-c----chHHHHHHHhc-----CCCHH
Q 008560 358 EGGIG----SLKS----YWDS--VSAVKSLEVAVELLSQLAS-CLPIAEVLVS-D----GFVVRLVNVLN-----CGVLS 416 (561)
Q Consensus 358 ~g~i~----~Lv~----lL~~--~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~-~----~~i~~Lv~lL~-----~~~~~ 416 (561)
-.++ .+.. .+.. ..+-...|.++.+|..++. .+.+.....+ . ..++.+..++. ...+.
T Consensus 432 -~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~ 510 (980)
T 3ibv_A 432 -LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPL 510 (980)
T ss_dssp -HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHH
T ss_pred -HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHH
Confidence 1122 2222 2211 1224788999999999986 3221110000 1 23455555655 55789
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhc------cCCCHHHHHHHHHHHHHhhcccc
Q 008560 417 VRIAAARAVSMLGINSKARKEMGECGCIGPLIKML------DGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 417 ~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll------~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
++..+..++.+.+..-.. ....++.++..+ .+.+..++..|+.++.+++....
T Consensus 511 V~~~~~~~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 511 VQLLYMEILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999999998862110 112344444443 34667899999999999996443
No 119
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.10 E-value=0.013 Score=45.44 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=50.7
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhh-----hhcchhHHHhccCCCCCc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDR-----HVRDGDVLIKSGVLQDGD 126 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~-----~~~~cp~l~t~~~l~~~~ 126 (561)
..+..+.||||.+.+.++ +..--|++| =++-+..|+.. +...|| +-...+. ..
T Consensus 15 ~~~~~~~C~IC~~~~~~p----------~~~~CgH~f---------C~~Ci~~~~~~~~~~~~~~~CP--~Cr~~~~-~~ 72 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP----------LSLDCGHSF---------CQACLTANHKKSMLDKGESSCP--VCRISYQ-PE 72 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC----------BCCSSSCCB---------CTTHHHHHHHHHHHTTSCCCCT--TTCCSSC-SS
T ss_pred HccCCCCCCCCCcccCCc----------eeCCCCCHH---------HHHHHHHHHHHhhcCCCCCcCC--CCCCccC-HH
Confidence 344679999999999863 444457888 67899999976 378999 6666666 45
Q ss_pred ccccccccccccc
Q 008560 127 VLIKSGVLQDGVV 139 (561)
Q Consensus 127 ~lipN~tLr~li~ 139 (561)
++.||+.|+.+++
T Consensus 73 ~~~~n~~l~~~ve 85 (85)
T 2ecv_A 73 NIRPNRHVANIVE 85 (85)
T ss_dssp SCCCSCCCCCCCC
T ss_pred hcCccHHHHHhhC
Confidence 7899999988763
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.71 E-value=0.048 Score=51.77 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=26.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHH
Q 008560 194 VPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACV 257 (561)
Q Consensus 194 v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~ 257 (561)
.+.|..+++++++.++..++..+ . .+.+..++++.+..+|..++.
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~----------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P----------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C----------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C----------------HHHHHHHHcCCCHHHHHHHHH
Confidence 35566677777777777666532 1 112334455666777766665
No 121
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.49 E-value=2.5 Score=40.44 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=113.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCc---hHHHHH-hcC-CHHHHHHHHhcCChHHHHHHHHHHHHhhCCch----hh
Q 008560 240 LIRVLESGSGFAKERACVALQALSFSKE---NARAIG-SRG-GISSLLEICQAGTPGSQAFAAGVLRNLAGFSE----IK 310 (561)
Q Consensus 240 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~---~~~~i~-~~g-~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~----~r 310 (561)
|-.-|.+.+...|..|...|..+..... ...... ..+ ..+.+-..+.+.+..+...++.++..++..-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4566778889999999988877654321 111111 122 34556667788899999999999988875321 11
Q ss_pred H--HHHhhhhHHHHHHH-hhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 008560 311 E--NFIEENAVMVLLGL-VASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQL 387 (561)
Q Consensus 311 ~--~i~~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L 387 (561)
. ...-...++.|++- +.+....++..+..++..++...... ...++.++..+...+ +.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKL-PKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSC-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 1 12234567777764 67777788888888887765322100 012344455555544 58888888888877
Q ss_pred hc-C-hhh--HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 008560 388 AS-C-LPI--AEVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 388 ~~-~-~~~--~~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
.. + ... ....+ ..+++.+..++.+.+..||..|..++..+..
T Consensus 167 l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 63 1 111 11111 1244566778889999999999999988864
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.25 E-value=7.2 Score=36.22 Aligned_cols=152 Identities=17% Similarity=0.118 Sum_probs=98.3
Q ss_pred hhHHHHHhcchHHHHHHHhcC----C-------CHHHHHHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHhccCCCHHHH
Q 008560 392 PIAEVLVSDGFVVRLVNVLNC----G-------VLSVRIAAARAVSMLGINSKARKEMGE-CGCIGPLIKMLDGKAVEEK 459 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~----~-------~~~~~~~A~~aL~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~ 459 (561)
...+.+ ..+++..|+.+|.. + +...+..++.+|..+..+....+.+.. .+++..|...+.+..+.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 445666 45677777776642 1 235677889999999988766665555 4789999999988999999
Q ss_pred HHHHHHHHHhhcccc--c-hhhHh---------hcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCc---h----HHH
Q 008560 460 ESAAKALSTLMLYAG--N-RKILR---------KDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCR---K----CRK 520 (561)
Q Consensus 460 ~~A~~aL~~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~---~----~r~ 520 (561)
..+.++|..++..++ + .+.+. .+..-+..+++.|........+..++..+-.+..++ + .|.
T Consensus 114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 193 (233)
T 2f31_A 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 193 (233)
T ss_dssp HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999886543 3 33332 223346668887765322222222222233333322 2 467
Q ss_pred HHHHcCchHHHHHhhccCccchHH
Q 008560 521 QMVAAGACLHLRKLVEMDIEGANK 544 (561)
Q Consensus 521 ~i~~~g~i~~L~~Ll~~~~~~akk 544 (561)
.+...|..+.+.++-..+.++-+.
T Consensus 194 ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 194 ELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHCChHHHHHHHhccCCHHHHH
Confidence 888999999999887766655443
No 123
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=92.13 E-value=0.0058 Score=49.35 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=49.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGV 133 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~t 133 (561)
..+.||||.+.+.+ |+.. .-|++| -..-|.+|+.. ..+|| +-...+. ..++.||+.
T Consensus 21 ~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~-~~~CP--~Cr~~~~-~~~l~~n~~ 77 (99)
T 2y43_A 21 DLLRCGICFEYFNI----------AMIIPQCSHNY---------CSLCIRKFLSY-KTQCP--TCCVTVT-EPDLKNNRI 77 (99)
T ss_dssp HHTBCTTTCSBCSS----------EEECTTTCCEE---------EHHHHHHHHTT-CCBCT--TTCCBCC-GGGCEECHH
T ss_pred CCCCcccCChhhCC----------cCEECCCCCHh---------hHHHHHHHHHC-CCCCC--CCCCcCC-hhhCCcCHH
Confidence 45899999999986 5665 567999 88999999985 57999 7777665 357888888
Q ss_pred ccccccc
Q 008560 134 LQDGVVS 140 (561)
Q Consensus 134 Lr~li~~ 140 (561)
++.++..
T Consensus 78 l~~~i~~ 84 (99)
T 2y43_A 78 LDELVKS 84 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776643
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.13 E-value=3.5 Score=41.58 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=101.3
Q ss_pred hhhHHHHhhhhHHHHHHHhhc-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHH
Q 008560 308 EIKENFIEENAVMVLLGLVAS-----------GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKS 376 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~ 376 (561)
.....++ .+++..|+++|.. .+...+..++.||..+..........+.....+..|...+.+.. +.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~-~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-PNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS-HHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc-hHH
Confidence 4445565 6778888888752 12367788999999987766555555556678999999887755 589
Q ss_pred HHHHHHHHHHhhcCh--hh-HHHHHhc----------chHHHHHHHhcC-CCHHHHHHHHHHHHHHcCC-------HHHH
Q 008560 377 LEVAVELLSQLASCL--PI-AEVLVSD----------GFVVRLVNVLNC-GVLSVRIAAARAVSMLGIN-------SKAR 435 (561)
Q Consensus 377 ~e~a~~aL~~L~~~~--~~-~~~l~~~----------~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~-------~~~~ 435 (561)
+..++.+|..+|..+ ++ ...+.+. .-...++..|+. .+.+.+..+...+-.+..+ -..+
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 258 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 258 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999743 33 4444331 236778888876 4567666666666666653 1456
Q ss_pred HHHHhCCChHHHHHhccCCCHHHH
Q 008560 436 KEMGECGCIGPLIKMLDGKAVEEK 459 (561)
Q Consensus 436 ~~i~~~g~i~~Lv~ll~~~~~~v~ 459 (561)
.++...|..+.+-.+-...++.+.
T Consensus 259 ~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 259 SELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHCChHHHHHHHhcCCChhHH
Confidence 677788887777765444555543
No 125
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.03 E-value=0.28 Score=51.35 Aligned_cols=241 Identities=15% Similarity=0.093 Sum_probs=149.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHhchhhHHHHHHHHh--c-C-------CHHHHHHHHHHHHH
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS-KHVLIAEGLLLLNHLIRVLE--S-G-------SGFAKERACVALQA 261 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~-~~~i~~~g~~~i~~Lv~lL~--~-~-------~~~~~~~aa~~L~~ 261 (561)
..+.|+.-|-++.=++|.-|+.+|..+-..... .......+.+..-.|+.+|- . | -..+|+.+|++|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 556666666677778999999999887543211 00001111013444444442 1 1 24689999999999
Q ss_pred hcCC-CchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHH
Q 008560 262 LSFS-KENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGC 340 (561)
Q Consensus 262 Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 340 (561)
+ .. ++. ..++..|+..+....=+++..+.-.|..+ .+.-.. =.++++.++.-|.+.+++++..|+.+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 54 222 34555565544555556677777788887 221111 25788899999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHhCcHHHHHHh----hhcCC-CHHHHHHHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcCCCH
Q 008560 341 LCNLVSDDESLKLLIVREGGIGSLKSY----WDSVS-AVKSLEVAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNCGVL 415 (561)
Q Consensus 341 L~~L~~~~~~~r~~~~~~g~i~~Lv~l----L~~~~-~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 415 (561)
|..++.. ..++.++.. |.+-+ -....-..+..|..|+.++.. .-.....+|+|..++++.-.
T Consensus 323 LiPIA~p-----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 323 LCHFPIT-----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HTTSCCS-----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSH
T ss_pred hhhhcch-----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcH
Confidence 9999822 223333332 32211 113456678888888875532 11112678999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 008560 416 SVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALS 467 (561)
Q Consensus 416 ~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~ 467 (561)
.||..+..+|..+. +...-+.+ ...++-..++++++.+.++..
T Consensus 390 SVR~AVL~TL~tfL-~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS-EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998887 22211111 122233577788887777664
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.43 E-value=6.3 Score=36.62 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=97.8
Q ss_pred HHHHHHHHhhccCchhh-HHHHhcCChHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCCcchHHHHH-hchh
Q 008560 169 SAMDSLLGLLQEDDKNV-VIAVAQGVVPVLVKLMDS----S-------SLEMKEKTVASIARVSMVDSSKHVLIA-EGLL 235 (561)
Q Consensus 169 ~Al~~L~~l~~~~~~~~-~~i~~~g~v~~Lv~lL~~----~-------~~~~~e~a~~~L~~La~~~~~~~~i~~-~g~~ 235 (561)
+-+..|.-.++.++..+ +.+ ..+|+..|+.+|.. + +.+.+..++.+|..+-.+......+.+ .+
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~-- 96 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE-- 96 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSS--
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcH--
Confidence 34555555555554333 333 46788888887742 1 346678889999988776655555555 66
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc--h-HHHHH----------hcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFSKE--N-ARAIG----------SRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
++..|+..|.+..+.++..+..+|..++..++ + ...+. +..-+..+++.+++.+...-..++-.+.|
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN 176 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 176 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 89999999999999999999999998887643 4 33222 12246667776664332222333334444
Q ss_pred -hhCCc---h----hhHHHHhhhhHHHHHHHhhcCCH
Q 008560 303 -LAGFS---E----IKENFIEENAVMVLLGLVASGTA 331 (561)
Q Consensus 303 -Ls~~~---~----~r~~i~~~g~v~~Lv~lL~~~~~ 331 (561)
+...+ + .|..+...|..+.+-++=..+++
T Consensus 177 ~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~ 213 (233)
T 2f31_A 177 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENE 213 (233)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCH
Confidence 33332 2 35555666766666555444444
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.32 E-value=13 Score=37.34 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=97.7
Q ss_pred hhHHHHHhcchHHHHHHHhcC-----------CCHHHHHHHHHHHHHHcCCHHHHHHHHhC-CChHHHHHhccCCCHHHH
Q 008560 392 PIAEVLVSDGFVVRLVNVLNC-----------GVLSVRIAAARAVSMLGINSKARKEMGEC-GCIGPLIKMLDGKAVEEK 459 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~-----------~~~~~~~~A~~aL~~L~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~ 459 (561)
.-.+.+. .+++..|+.+|.. .+...+...+.+|..+..+......+... .++..|+..+.+..+.++
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 4456665 5677888887741 13467778899999999887666655554 789999999999999999
Q ss_pred HHHHHHHHHhhcccc--c-hhhHh---------hcCCCHHHHHHhccCCccchhhHHHHHHHHHhcC---Cch----HHH
Q 008560 460 ESAAKALSTLMLYAG--N-RKILR---------KDERGIVTVVQLLDPLIQNLDKKYPVAILAALVH---CRK----CRK 520 (561)
Q Consensus 460 ~~A~~aL~~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~---~~~----~r~ 520 (561)
..+.++|..++..+. + .+.+. .+..-+..++..|........+..++..+-.+.. +-+ .|.
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 259 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 259 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999886553 2 33332 2233467788888764222222222222333332 222 457
Q ss_pred HHHHcCchHHHHHhhccCccc
Q 008560 521 QMVAAGACLHLRKLVEMDIEG 541 (561)
Q Consensus 521 ~i~~~g~i~~L~~Ll~~~~~~ 541 (561)
.+...|..+.+.++-..+.++
T Consensus 260 ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 260 ELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp HHHHTTHHHHHHHHTTSCCHH
T ss_pred HHHHCChHHHHHHHhcCCChh
Confidence 788999999998876655443
No 128
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.25 E-value=3 Score=47.65 Aligned_cols=212 Identities=12% Similarity=-0.029 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHH---h--cCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCH
Q 008560 205 SLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVL---E--SGSGFAKERACVALQALSFS-KENARAIGSRGGI 278 (561)
Q Consensus 205 ~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL---~--~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i 278 (561)
+-..+|.++.++..++..-.... .. .++.++.++ . ..++.+|..+++++..++.. .++.. .. ...+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~--~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KR--QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------C--HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hH--HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHH
Confidence 44578889999988875421111 13 445555444 2 34789999999999998753 11111 11 1246
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH--hhhhHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCC-hHHHH
Q 008560 279 SSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI--EENAVMVLLGLVASG--TALAQENVFGCLCNLVSDD-ESLKL 353 (561)
Q Consensus 279 ~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~--~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~-~~~r~ 353 (561)
+.|+..+ + +.++..|+.++.+++.. .+..+. -...+..+.+++..+ +...+.....++..++..- +..+.
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6677767 3 77899999999999943 333333 235666677777763 4578888888888876532 11122
Q ss_pred HHHHhCcHHHHHHhhh----cCC-CHHHHHHHHHHHHHhhc-----Ch---hh------HHHHH--hcchHHHHHHHhcC
Q 008560 354 LIVREGGIGSLKSYWD----SVS-AVKSLEVAVELLSQLAS-----CL---PI------AEVLV--SDGFVVRLVNVLNC 412 (561)
Q Consensus 354 ~~~~~g~i~~Lv~lL~----~~~-~~~~~e~a~~aL~~L~~-----~~---~~------~~~l~--~~~~i~~Lv~lL~~ 412 (561)
..+ ...+++++..+. ... +...+......+..|+. .+ +. .+.+. ...+++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 222 123444444333 222 33344445555555542 00 00 00011 12456666666643
Q ss_pred --CCHHHHHHHHHHHHHHcC
Q 008560 413 --GVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 413 --~~~~~~~~A~~aL~~L~~ 430 (561)
.+..+.+.+..++.+++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 367899999999988764
No 129
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.21 E-value=7.3 Score=37.01 Aligned_cols=135 Identities=11% Similarity=0.038 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCC--hHHHHHHHH-hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchH
Q 008560 328 SGTALAQENVFGCLCNLVSDD--ESLKLLIVR-EGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFV 403 (561)
Q Consensus 328 ~~~~~~~~~a~~~L~~L~~~~--~~~r~~~~~-~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i 403 (561)
+.+..+...++.+|..+...- .+.+-.-.+ .-.+|.|+.-+-+.. ..+++.+-.++..++. ++. ..+.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~~~-------~~v~ 169 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVVGP-------LKMT 169 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCH-------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHCCH-------HHHH
Confidence 555666666666666653210 000000000 124677777775544 4788888888887765 222 2366
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh---HHHHHhccCCCHHHHHHHHHHHHHhhcccc
Q 008560 404 VRLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGECGCI---GPLIKMLDGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 404 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
+.+++-+.+.|..+++.+...+..+-...... ...++ +.+..++.+.+..+|..|..++..+..+.+
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 77888889999999999988888775421111 23468 999999999999999999999987765543
No 130
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=90.86 E-value=0.013 Score=47.44 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHh-hhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQ-KCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGV 133 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~-~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~t 133 (561)
..+.||||++.+.+ |+. ..-|++| =+.-|.+|+.....+|| +-..++. ..++++|+.
T Consensus 21 ~~~~C~IC~~~~~~----------p~~~~~CgH~F---------C~~Ci~~~~~~~~~~CP--~Cr~~~~-~~~l~~~~~ 78 (100)
T 3lrq_A 21 EVFRCFICMEKLRD----------ARLCPHCSKLC---------CFSCIRRWLTEQRAQCP--HCRAPLQ-LRELVNCRW 78 (100)
T ss_dssp HHTBCTTTCSBCSS----------EEECTTTCCEE---------EHHHHHHHHHHTCSBCT--TTCCBCC-GGGCEECTT
T ss_pred CCCCCccCCccccC----------ccccCCCCChh---------hHHHHHHHHHHCcCCCC--CCCCcCC-HHHhHhhHH
Confidence 35889999999996 566 5568999 88999999988768999 6666665 356666665
Q ss_pred ccc
Q 008560 134 LQD 136 (561)
Q Consensus 134 Lr~ 136 (561)
+..
T Consensus 79 ~~~ 81 (100)
T 3lrq_A 79 AEE 81 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 131
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=89.88 E-value=0.017 Score=48.16 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKS 131 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN 131 (561)
..+..+.||||.+++.+ |+..--|++| =++-|.+|+..+..+|| +-..++. ...+.||
T Consensus 14 ~~~~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~-~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALRE----------AVQTPCGHRF---------CKACIIKSIRDAGHKCP--VDNEILL-ENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHHHHHCSBCT--TTCCBCC-GGGCEEC
T ss_pred CCCCCCCCCcCChhhcC----------eEECCcCChh---------hHHHHHHHHhhCCCCCC--CCCCCcC-HHhcccC
Confidence 44567999999999996 4555457999 88999999998777999 7777776 3567787
Q ss_pred ccccccccc
Q 008560 132 GVLQDGVVS 140 (561)
Q Consensus 132 ~tLr~li~~ 140 (561)
..+++.|..
T Consensus 72 ~~l~~~i~~ 80 (118)
T 3hct_A 72 NFAKREILS 80 (118)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 777665544
No 132
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.28 E-value=0.015 Score=48.56 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=54.3
Q ss_pred hhhhHHHHHHhhhHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhh
Q 008560 31 GKWVIVKTKLNDLETQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRH 109 (561)
Q Consensus 31 ~~~~~~~~~~~~l~~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~ 109 (561)
+.|..-..-++.|. ..+.||||++++.+ ||.. .-|++| =+.-|.+|+.
T Consensus 7 ~~~~~~~~~~~~l~----------~~~~C~IC~~~~~~----------pv~~~~CgH~f---------C~~Ci~~~~~-- 55 (117)
T 1jm7_B 7 GAWAHSRAALDRLE----------KLLRCSRCTNILRE----------PVCLGGCEHIF---------CSNCVSDCIG-- 55 (117)
T ss_dssp CCCHHHHHHHHHHH----------HTTSCSSSCSCCSS----------CBCCCSSSCCB---------CTTTGGGGTT--
T ss_pred cCccchHHHHHhch----------hCCCCCCCChHhhC----------ccEeCCCCCHH---------HHHHHHHHhc--
Confidence 45666555555553 35889999999986 5776 568999 6778889987
Q ss_pred hcchhHHHhccCCCCCcccccccccccccc
Q 008560 110 VRDGDVLIKSGVLQDGDVLIKSGVLQDGVV 139 (561)
Q Consensus 110 ~~~cp~l~t~~~l~~~~~lipN~tLr~li~ 139 (561)
..|| +-..++. ..++.||+.|+.++.
T Consensus 56 -~~CP--~Cr~~~~-~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 56 -TGCP--VCYTPAW-IQDLKINRQLDSMIQ 81 (117)
T ss_dssp -TBCS--SSCCBCS-CSSCCCCHHHHHHHH
T ss_pred -CCCc--CCCCcCc-cccccccHHHHHHHH
Confidence 7899 6666664 457888888877654
No 133
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=88.95 E-value=0.018 Score=47.22 Aligned_cols=64 Identities=14% Similarity=-0.017 Sum_probs=47.4
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCC---ccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDG---DVLIK 130 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~---~~lip 130 (561)
..+.||||.+++.+ |++. .-|++| =+.-|.+|+..+ .+|| +-...+... ..+.+
T Consensus 14 ~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~~-~~CP--~Cr~~~~~~~~~~~l~~ 71 (108)
T 2ckl_A 14 PHLMCVLCGGYFID----------ATTIIECLHSF---------CKTCIVRYLETS-KYCP--ICDVQVHKTRPLLNIRS 71 (108)
T ss_dssp GGTBCTTTSSBCSS----------EEEETTTCCEE---------EHHHHHHHHTSC-SBCT--TTCCBSCSSCGGGGEEE
T ss_pred CcCCCccCChHHhC----------cCEeCCCCChh---------hHHHHHHHHHhC-CcCc--CCCccccccCcccccCc
Confidence 56899999999986 5775 668999 889999999864 8999 666665532 15666
Q ss_pred cccccccccc
Q 008560 131 SGVLQDGVVS 140 (561)
Q Consensus 131 N~tLr~li~~ 140 (561)
|..++.++..
T Consensus 72 n~~l~~~i~~ 81 (108)
T 2ckl_A 72 DKTLQDIVYK 81 (108)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7666655543
No 134
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.94 E-value=15 Score=41.64 Aligned_cols=214 Identities=13% Similarity=0.043 Sum_probs=123.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHH---hcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCC
Q 008560 202 DSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVL---ESGSGFAKERACVALQALSFS-KENARAIGSRGG 277 (561)
Q Consensus 202 ~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL---~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~ 277 (561)
.+.+...+|.++.++..++..-... ... .++.++..+ ..+++.++..+++++...+.. .++. ... ...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~--~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSD--VVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCS--HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhH--HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence 4456778899999999988642110 012 444444444 235788999999999988753 1111 111 357
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHH--hhhhHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCh-HHH
Q 008560 278 ISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFI--EENAVMVLLGLVASG--TALAQENVFGCLCNLVSDDE-SLK 352 (561)
Q Consensus 278 i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~--~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~-~~r 352 (561)
++.|+..+.+ +.++..|+.+|.+++.. .+..+. -...+..|..++..+ +...+.....++..++...+ ..+
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 8888888855 78899999999999853 223232 134566666777653 45788888888888876432 222
Q ss_pred HHHHHhCcHHHHHHhhh----cCCCHHHHH---HHHHHHHHhhc--C---h------------------hhHHHHHhcch
Q 008560 353 LLIVREGGIGSLKSYWD----SVSAVKSLE---VAVELLSQLAS--C---L------------------PIAEVLVSDGF 402 (561)
Q Consensus 353 ~~~~~~g~i~~Lv~lL~----~~~~~~~~e---~a~~aL~~L~~--~---~------------------~~~~~l~~~~~ 402 (561)
...+ ...++++...+. ...+++.+. ..+..|..+.+ . + .....+ ...+
T Consensus 607 ~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 684 (963)
T 2x19_B 607 LKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQV 684 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHH
Confidence 2222 234555555443 222344444 33444444332 1 0 001111 1234
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHc
Q 008560 403 VVRLVNVLN--CGVLSVRIAAARAVSMLG 429 (561)
Q Consensus 403 i~~Lv~lL~--~~~~~~~~~A~~aL~~L~ 429 (561)
++.+..++. ..+..+.+.++.++..+.
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 455555553 346788888888888765
No 135
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=87.62 E-value=0.034 Score=42.00 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=43.0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCcchhhhhHHHHHHHhhhh-hcchhHHHhccCCCCCcccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKC-QGVSLTEGKLKTQSDIDSVLAKLDRH-VRDGDVLIKSGVLQDGDVLI 129 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c-~~~~y~~g~l~~~sd~~~i~~~l~~~-~~~cp~l~t~~~l~~~~~li 129 (561)
..+..+.|||+++.+.+ |+..- -|++| =+.-|.+|+... ..+|| +-..+....+.++
T Consensus 11 ~~~~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~~~~~~CP--~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD----------AVVIPCCGNSY---------CDECIRTALLESDEHTCP--TCHQNDVSPDALS 69 (74)
T ss_dssp CSCGGGSCSSSCCCCTT----------CEECSSSCCEE---------CTTHHHHHHHHSSSSCCS--SSCCSSCCTTTTT
T ss_pred cCCCCCCCcCCChHHhC----------CeEcCCCCCHH---------HHHHHHHHHHhcCCCcCC--CCCCcCCCccccc
Confidence 45577999999999996 46654 67999 778999999863 47999 6665544344455
Q ss_pred cc
Q 008560 130 KS 131 (561)
Q Consensus 130 pN 131 (561)
||
T Consensus 70 ~n 71 (74)
T 2yur_A 70 GP 71 (74)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 136
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.31 E-value=0.094 Score=42.96 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=53.3
Q ss_pred hhhhHHHHHHhhhHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh-
Q 008560 31 GKWVIVKTKLNDLETQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH- 109 (561)
Q Consensus 31 ~~~~~~~~~~~~l~~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~- 109 (561)
.+|..+...++.+.. .+.||||.+.+.+ ++...-|++| =..-|.+|+...
T Consensus 6 ~~~~~~~~~~~~~~~----------~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~ 56 (112)
T 1jm7_A 6 LRVEEVQNVINAMQK----------ILECPICLELIKE----------PVSTKCDHIF---------CKFCMLKLLNQKK 56 (112)
T ss_dssp SSHHHHHHHHHHHHH----------HTSCSSSCCCCSS----------CCBCTTSCCC---------CSHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhccC----------CCCCcccChhhcC----------eEECCCCCHH---------HHHHHHHHHHhCC
Confidence 456666665555433 4689999999986 4555567999 788999999854
Q ss_pred -hcchhHHHhccCCCCCccccccccccccc
Q 008560 110 -VRDGDVLIKSGVLQDGDVLIKSGVLQDGV 138 (561)
Q Consensus 110 -~~~cp~l~t~~~l~~~~~lipN~tLr~li 138 (561)
..+|| +-..++. ...+.||..+..++
T Consensus 57 ~~~~CP--~Cr~~~~-~~~~~~~~~l~~~~ 83 (112)
T 1jm7_A 57 GPSQCP--LCKNDIT-KRSLQESTRFSQLV 83 (112)
T ss_dssp SSCCCT--TTSCCCC-TTTCBCCCSSSHHH
T ss_pred CCCCCc--CCCCcCC-HhhcCccHHHHHHH
Confidence 36899 7666666 34677777665544
No 137
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=86.65 E-value=0.041 Score=49.13 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=51.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKS 131 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN 131 (561)
..+..|.|||+.+++.+ |+..--|++| =++-|.+|+..+..+|| +-..++. ..+++||
T Consensus 14 ~~~~~~~C~IC~~~~~~----------pv~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~-~~~~~~~ 71 (170)
T 3hcs_A 14 PLESKYECPICLMALRE----------AVQTPCGHRF---------CKACIIKSIRDAGHKCP--VDNEILL-ENQLFPD 71 (170)
T ss_dssp CCCGGGBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHHHHHCSBCT--TTCCBCC-GGGCEEC
T ss_pred CCCCCCCCCCCChhhcC----------cEECCCCCHH---------HHHHHHHHHHhCCCCCC--CCccCcc-hhhhhhh
Confidence 45577999999999996 4665568899 88999999998778999 6666766 3467777
Q ss_pred ccccccccc
Q 008560 132 GVLQDGVVS 140 (561)
Q Consensus 132 ~tLr~li~~ 140 (561)
..+.+.|..
T Consensus 72 ~~~~~~i~~ 80 (170)
T 3hcs_A 72 NFAKREILS 80 (170)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 777665543
No 138
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.58 E-value=16 Score=36.69 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=100.4
Q ss_pred hhhHHHHhhhhHHHHHHHhhc----C-------CHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHH
Q 008560 308 EIKENFIEENAVMVLLGLVAS----G-------TALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKS 376 (561)
Q Consensus 308 ~~r~~i~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~ 376 (561)
.....|. .+|+..|+..|.. + +...+..++.||..+.....+....+....++..+...+.+.. +.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~-~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-PNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTS-HHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCC-chH
Confidence 4445554 5778888887742 1 2356788999999998776666666666678888888887644 578
Q ss_pred HHHHHHHHHHhhcCh--hh-HHHHHh----------cchHHHHHHHhcC-CCHHHHHHHHHHHHHHcCC-------HHHH
Q 008560 377 LEVAVELLSQLASCL--PI-AEVLVS----------DGFVVRLVNVLNC-GVLSVRIAAARAVSMLGIN-------SKAR 435 (561)
Q Consensus 377 ~e~a~~aL~~L~~~~--~~-~~~l~~----------~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~-------~~~~ 435 (561)
+..++.+|..+|..+ .| ...+.+ ..-...+++.+.. .+.+.+..+...+-.+..+ -..+
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 888999999999643 35 443332 1235668887763 4556666666556556553 1457
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHH
Q 008560 436 KEMGECGCIGPLIKMLDGKAVEEKE 460 (561)
Q Consensus 436 ~~i~~~g~i~~Lv~ll~~~~~~v~~ 460 (561)
.++...|..+.+-.+-...++.+..
T Consensus 197 ~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 197 SELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHCChHHHHHHHhccCChhHHH
Confidence 7888888877776665556665544
No 139
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=85.86 E-value=23 Score=40.64 Aligned_cols=143 Identities=8% Similarity=-0.074 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcC----CCHHHHHHHHHHHHHhhcChhhHHHHHhcchHH
Q 008560 329 GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSV----SAVKSLEVAVELLSQLASCLPIAEVLVSDGFVV 404 (561)
Q Consensus 329 ~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~----~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~ 404 (561)
.+...++.++.++..++..-......-.-...++.|+.+.... +.+.++..++.+++.++..-....... ..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 3447889999999999864321111111112334444433211 122333346677776664211111111 14566
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHh----------CCChHHHHHhccCCCHHHHHHHHHHHHHhhcccc
Q 008560 405 RLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGE----------CGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 405 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~----------~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
.++..|.+.++.++..|+.++.+||. ++++.+.. ...+..|..++..-+........+++..+....+
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~--~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHH--HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 77777777789999999999999995 33333320 1123334444444344445566677777764433
No 140
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.52 E-value=56 Score=37.36 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHHhcCCcc-hHHHHHhchhhHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCchHHHHHhcCCH
Q 008560 205 SLEMKEKTVASIARVSMVDSS-KHVLIAEGLLLLNHLIRVLESG-----SGFAKERACVALQALSFSKENARAIGSRGGI 278 (561)
Q Consensus 205 ~~~~~e~a~~~L~~La~~~~~-~~~i~~~g~~~i~~Lv~lL~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i 278 (561)
+-..+|.++.+++.++..... ...-.-.. +++.|+.++++. ...++..++++|...+.--...+... ...+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHH
Confidence 467889999999999865332 12222234 788888888742 23455567788876654211111111 1245
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHh----------hhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 008560 279 SSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIE----------ENAVMVLLGLVASGTALAQENVFGCLCNLVSD 347 (561)
Q Consensus 279 ~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~----------~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 347 (561)
..|++.+.+..+..+..|++++.++|.. .+..++. ...+..+......-+.........++..+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5566666666788999999999999863 4444542 12333344444444555666777777777664
No 141
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.49 E-value=4.7 Score=46.34 Aligned_cols=143 Identities=8% Similarity=-0.062 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCC----HHHHHHHHHHHHHhhcChhhHHHHHhcchHH
Q 008560 329 GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSA----VKSLEVAVELLSQLASCLPIAEVLVSDGFVV 404 (561)
Q Consensus 329 ~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~----~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i~ 404 (561)
.+-..++.++.++..++.+-......-.-..+++.|+.++..... ..++..++.+|+..+..-....... ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 345789999999999987643222222223466777777764221 2233455566666554211101110 12344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHh------CCChHHHHHh----ccCCCHHHHHHHHHHHHHhhcccc
Q 008560 405 RLVNVLNCGVLSVRIAAARAVSMLGINSKARKEMGE------CGCIGPLIKM----LDGKAVEEKESAAKALSTLMLYAG 474 (561)
Q Consensus 405 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~------~g~i~~Lv~l----l~~~~~~v~~~A~~aL~~L~~~~~ 474 (561)
.|++.|...++.++..|+.++.+||. ++++.+.. ...++.++.. ...-++..+..+.+++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 45555555678999999999999994 45555542 1134444333 333456666777888888876544
No 142
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.29 E-value=33 Score=34.43 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=96.4
Q ss_pred hhHHHHHhcchHHHHHHHhcC----C-------CHHHHHHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHhccCCCHHHH
Q 008560 392 PIAEVLVSDGFVVRLVNVLNC----G-------VLSVRIAAARAVSMLGINSKARKEMGE-CGCIGPLIKMLDGKAVEEK 459 (561)
Q Consensus 392 ~~~~~l~~~~~i~~Lv~lL~~----~-------~~~~~~~A~~aL~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~ 459 (561)
.....+. .+++..|+.+|.. + +...+..++.+|..+..+......+.. .+++..|...+.+..+.++
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r 117 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 117 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 3455554 4667777776631 1 246677889999999987765555544 4789999999998999999
Q ss_pred HHHHHHHHHhhcccc--c-hhhHh---------hcCCCHHHHHHhccCCccchhhHHHHHHHHHhcCCch-------HHH
Q 008560 460 ESAAKALSTLMLYAG--N-RKILR---------KDERGIVTVVQLLDPLIQNLDKKYPVAILAALVHCRK-------CRK 520 (561)
Q Consensus 460 ~~A~~aL~~L~~~~~--~-~~~~~---------~~~~~i~~Lv~lL~~~~~~~~k~~a~~~L~~La~~~~-------~r~ 520 (561)
..+.++|..++..++ . .+.+. .+..-+..+|..|..+.....+..++..+-.+..+++ .|.
T Consensus 118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~ 197 (386)
T 2bnx_A 118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 197 (386)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999886543 2 22221 2223456688888653322222222232333333222 478
Q ss_pred HHHHcCchHHHHHhhccCccch
Q 008560 521 QMVAAGACLHLRKLVEMDIEGA 542 (561)
Q Consensus 521 ~i~~~g~i~~L~~Ll~~~~~~a 542 (561)
.+...|..+.|.+|-..+.++-
T Consensus 198 Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 198 ELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHCChHHHHHHHhccCChhH
Confidence 8999999999988876665543
No 143
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=83.20 E-value=70 Score=36.58 Aligned_cols=298 Identities=11% Similarity=0.032 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcC--Ccc----hHHHHH--h
Q 008560 162 GSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLV-KLMDSSSLEMKEKTVASIARVSMV--DSS----KHVLIA--E 232 (561)
Q Consensus 162 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~~~e~a~~~L~~La~~--~~~----~~~i~~--~ 232 (561)
++.+.+..++..+..+...-+- ..+.+...++.+. .++. ++++++.|+.+|..+... +.. ...+.. .
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~ 282 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Confidence 4566777788877776654332 2244556666666 3443 688999999999988754 121 111111 2
Q ss_pred chhhHHHHHH-----------HHh---cCCHHHHHHHHHHHHHhcCC--------CchHHHHHhcCCHHHHHHHHhcCCh
Q 008560 233 GLLLLNHLIR-----------VLE---SGSGFAKERACVALQALSFS--------KENARAIGSRGGISSLLEICQAGTP 290 (561)
Q Consensus 233 g~~~i~~Lv~-----------lL~---~~~~~~~~~aa~~L~~Ls~~--------~~~~~~i~~~g~i~~Lv~ll~~~~~ 290 (561)
+ .+..+.. ... ..+.+.....+..+..+... ++....+ ...++.++......+.
T Consensus 283 ~--~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~ 358 (1049)
T 3m1i_C 283 N--TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEER 358 (1049)
T ss_dssp H--HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCH
T ss_pred H--HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcH
Confidence 2 3332221 111 11233344455555433221 1111111 1245566666566666
Q ss_pred HHHHHHHHHHHHhhC----CchhhHHHH--hhhhHHHHHHHhhcCC-------------------H---HHHHHHHHHHH
Q 008560 291 GSQAFAAGVLRNLAG----FSEIKENFI--EENAVMVLLGLVASGT-------------------A---LAQENVFGCLC 342 (561)
Q Consensus 291 ~~~~~A~~aL~nLs~----~~~~r~~i~--~~g~v~~Lv~lL~~~~-------------------~---~~~~~a~~~L~ 342 (561)
.....+......++. .+..+..+. =...++.++..+..++ . ..+..+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 777777777766665 222222111 1223444444442110 0 12334555666
Q ss_pred HhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcchHHHHHHHhcC-----CCH
Q 008560 343 NLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLEVAVELLSQLAS-CLPIAEVLVSDGFVVRLVNVLNC-----GVL 415 (561)
Q Consensus 343 ~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e~a~~aL~~L~~-~~~~~~~l~~~~~i~~Lv~lL~~-----~~~ 415 (561)
.++..... .+ -.-..+.+-..+.+ ..+...++.++.+++.++. .....+.-.-..+++.++.+... ..+
T Consensus 439 ~l~~~~~~---~~-l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~ 514 (1049)
T 3m1i_C 439 YLTHLNVI---DT-EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKA 514 (1049)
T ss_dssp HHHHHCHH---HH-HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHH
T ss_pred HHHccCHH---HH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchH
Confidence 66532211 00 01112223333332 3445789999999999986 22211110001233333333221 123
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 416 SVRIAAARAVSMLGIN-SKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 416 ~~~~~A~~aL~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
.++..+++++.+++.- ..+.+.+. .+++.|+..+.+.++.++..|+.++.+++...
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444566777776641 11112221 24677888888888999999999999999743
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.76 E-value=17 Score=35.10 Aligned_cols=146 Identities=10% Similarity=0.124 Sum_probs=94.9
Q ss_pred HHHHHHHhhcC------CHHHHHHHHHHHHHhcCCChHHHHHHHH--hCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-
Q 008560 319 VMVLLGLVASG------TALAQENVFGCLCNLVSDDESLKLLIVR--EGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS- 389 (561)
Q Consensus 319 v~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~~~~~r~~~~~--~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~- 389 (561)
+....+++.++ +....+.|+..|..++-+-.. =-.+.+ ...+..|+ +... .++.+++.+.++|...-+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~-G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKH-GYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHH-HHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHh-hhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHcc
Confidence 34445566665 224567788888888765432 223332 22333333 2222 456899999999999887
Q ss_pred ChhhHHHHHhc--chHHHHHHHhcC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCC--CHHH
Q 008560 390 CLPIAEVLVSD--GFVVRLVNVLNC-------GVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGK--AVEE 458 (561)
Q Consensus 390 ~~~~~~~l~~~--~~i~~Lv~lL~~-------~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v 458 (561)
+|...+.+.+. .++..+..-|.. ....++..-+.+|..|..++.. +. ..++..|.+++... ++.+
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F~-~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---LP-IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---hh-hccHHHHHHHHccCCCCHHH
Confidence 88877777764 677777665543 3456777788899999887531 11 34567777777655 8999
Q ss_pred HHHHHHHHHHhhc
Q 008560 459 KESAAKALSTLML 471 (561)
Q Consensus 459 ~~~A~~aL~~L~~ 471 (561)
|.++..++..+..
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999888774
No 145
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.23 E-value=67 Score=36.87 Aligned_cols=168 Identities=11% Similarity=0.018 Sum_probs=104.0
Q ss_pred hHHHHHHHHhc----CCHHHHHHHHHHHHHhcC----CCc-hHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCC
Q 008560 236 LLNHLIRVLES----GSGFAKERACVALQALSF----SKE-NARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGF 306 (561)
Q Consensus 236 ~i~~Lv~lL~~----~~~~~~~~aa~~L~~Ls~----~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~ 306 (561)
.+..+..++++ .++.++..+.-++.+|.. +.. +...+.. -....|.+.+..++...+..++.+|.|+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 55555666654 356667767776666643 211 1111111 1233344455667777788999999999642
Q ss_pred chhhHHHHhhhhHHHHHHHhhc-------CCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc-CCCHHHHH
Q 008560 307 SEIKENFIEENAVMVLLGLVAS-------GTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS-VSAVKSLE 378 (561)
Q Consensus 307 ~~~r~~i~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~-~~~~~~~e 378 (561)
..++.|..++.. ....++..|+.+|.+++...+. .+-+.|+.+..+ ..++++|.
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHHHH
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHHHH
Confidence 456777777642 1236788899999999876542 123345566643 45568888
Q ss_pred HHHHHHHHhhcChhhHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHHcCC
Q 008560 379 VAVELLSQLASCLPIAEVLVSDGFVVRLVNVLNC-GVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 379 ~a~~aL~~L~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~ 431 (561)
.|+.+|..-. |. ...+..+...+.. .+..+.-.....|.+++.+
T Consensus 533 aA~~~Lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 533 RSCIVFFESK--PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHTC--CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC--cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8877775432 21 1356777777755 5678888888888888874
No 146
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.39 E-value=39 Score=34.76 Aligned_cols=122 Identities=11% Similarity=0.150 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHH
Q 008560 161 IGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHL 240 (561)
Q Consensus 161 ~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~L 240 (561)
.|+...|.-|+.-|..+.+.-++.. ..++..++.|+.+.+..+|.+|+..|-.++.+ +.. .. +...|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-----~k--iaDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-----PR--VADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-----HH--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-----hh--HHHHH
Confidence 4678888888888888888766544 45688999999999999999999999999977 332 23 67888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHH
Q 008560 241 IRVLESGSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRN 302 (561)
Q Consensus 241 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~n 302 (561)
+++|+..+..-...+-.+|..|-..+ ..+.+..|...+..++...++.++..|..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 99999887766666666666553321 12456667777777777777777777643
No 147
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=81.15 E-value=0.064 Score=46.24 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=38.5
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccC
Q 008560 54 PAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGV 121 (561)
Q Consensus 54 p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~ 121 (561)
+..|.||||.+++.+ ||+..-|++| =+.-|.+|+..+..+|| +-..+
T Consensus 29 ~~~~~C~IC~~~~~~----------pv~~~CgH~F---------C~~Ci~~~~~~~~~~CP--~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRR----------PFQAQCGHRY---------CSFCLASILSSGPQNCA--ACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHGGGSCEECH--HHHHT
T ss_pred CcCcCCCCCChhhcC----------cEECCCCCcc---------CHHHHHHHHhcCCCCCC--CCCCc
Confidence 356999999999996 5666667999 88999999988888999 55443
No 148
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=80.90 E-value=0.075 Score=43.99 Aligned_cols=48 Identities=8% Similarity=-0.150 Sum_probs=38.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
..+.|||+.+.+.+ |+..--|++| =+.-|.+|+..+..+|| +-..++.
T Consensus 22 ~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILAD----------PVETSCKHLF---------CRICILRCLKVMGSYCP--SCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSS----------EEECTTSCEE---------EHHHHHHHHHHTCSBCT--TTCCBCC
T ss_pred CCCCCCCCCcHhcC----------cEEcCCCCcc---------cHHHHHHHHhHCcCcCC--CCCCCCC
Confidence 35889999999986 4555557999 88999999988778999 7666665
No 149
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.52 E-value=0.21 Score=36.49 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=40.1
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
..+..+.|||+++.+.+ ++..--|++| =..-|.+|+..+..+|| +-..++.
T Consensus 11 ~~~~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS----------PKQTECGHRF---------CESCMAALLSSSSPKCT--ACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESS----------CCCCSSSCCC---------CHHHHHHHHTTSSCCCT--TTCCCCC
T ss_pred cCCcCCCCCCCChHhcC----------eeECCCCCHH---------HHHHHHHHHHhCcCCCC--CCCcCCC
Confidence 34467999999999986 4555567889 78999999987788999 6655554
No 150
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=79.82 E-value=49 Score=32.55 Aligned_cols=241 Identities=16% Similarity=0.151 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhh-cCCHH
Q 008560 254 RACVALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVA-SGTAL 332 (561)
Q Consensus 254 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~-~~~~~ 332 (561)
.+-..|.-|-.+++.-.-++..+|+..+..+..-.+.+..++.+..|...+.....+..= -...+|-++..+. .++++
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcc
Confidence 333344444444556678889999999999999999999999999999887654432211 1246677777775 66778
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCC------CHHHHHHHHH-------HHHHhhc----------
Q 008560 333 AQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVS------AVKSLEVAVE-------LLSQLAS---------- 389 (561)
Q Consensus 333 ~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~------~~~~~e~a~~-------aL~~L~~---------- 389 (561)
+.....+.|.|...+....++..+..|+|..|-+.+...+ +..-+..+++ ++-|+-.
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr 420 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGET 420 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCC
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcc
Confidence 9999999999999999999999999999999988875422 2223333444 4444321
Q ss_pred ---ChhhHHH---HHhcchHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCHH--------HHHHHHhCCChHHHHH
Q 008560 390 ---CLPIAEV---LVSDGFVVRLVNVLNCGVL------SVRIAAARAVSMLGINSK--------ARKEMGECGCIGPLIK 449 (561)
Q Consensus 390 ---~~~~~~~---l~~~~~i~~Lv~lL~~~~~------~~~~~A~~aL~~L~~~~~--------~~~~i~~~g~i~~Lv~ 449 (561)
.+.-.++ +++..++..|...|..... +++....+...-+...+. +.....+...+.+++-
T Consensus 421 ~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIci 500 (619)
T 3c2g_A 421 KTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICA 500 (619)
T ss_dssp CCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHH
Confidence 0011233 3344677888887765432 444444444444444211 1122233444554443
Q ss_pred hcc-----CC---C----HHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccC
Q 008560 450 MLD-----GK---A----VEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDP 495 (561)
Q Consensus 450 ll~-----~~---~----~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~ 495 (561)
.+. .. . .+..+.+..+|..|...-+..+++.+..-.|..=+.+|.+
T Consensus 501 A~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~ 558 (619)
T 3c2g_A 501 AYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNG 558 (619)
T ss_dssp HHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSS
T ss_pred HHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcc
Confidence 331 11 1 2234555566666655444445554544455555556654
No 151
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=79.79 E-value=21 Score=33.04 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=92.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc--ChhhH
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS--CLPIA 394 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~--~~~~~ 394 (561)
..++..-.+..++..+++..|+..|..+ ...+ ..++.+...+..+..=.+++.+..++..++. .++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3455556667778889999999988877 3222 1344444434444445899999999999884 433
Q ss_pred HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH---HHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 395 EVLVSDGFVVRLVNVLNCGVLSVRIAAARAVSMLGINS---KARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 395 ~~l~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
..++.+.....+.+..++..|...+.-.+.-+ ..... +++.|-.+..+++.-||...+..|..++.
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 25677888999999999999987765433211 11111 24555556667889999999999999997
Q ss_pred cccc
Q 008560 472 YAGN 475 (561)
Q Consensus 472 ~~~~ 475 (561)
..+.
T Consensus 208 ~~Pd 211 (240)
T 3l9t_A 208 KFPD 211 (240)
T ss_dssp TCHH
T ss_pred hCHH
Confidence 6554
No 152
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=79.10 E-value=26 Score=32.52 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHH-HHhcCCHHHHHHHHHHHHHhcC--CCchHHH
Q 008560 195 PVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIR-VLESGSGFAKERACVALQALSF--SKENARA 271 (561)
Q Consensus 195 ~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~--~~~~~~~ 271 (561)
+....|..+..-++|..|+..|..+ .. ... .++.+-. +-...+-.+++.++.++..++. .++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~--~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKE--ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHH--HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHH--HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 3344455666678888888887766 21 123 5555555 4456789999999999998864 222
Q ss_pred HHhcCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHH
Q 008560 272 IGSRGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESL 351 (561)
Q Consensus 272 i~~~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 351 (561)
..++.+...+.+.++.+++.|...++--+..+..+ ..-+-+++.+-.+..+++.-+|...+..|..++..+++.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 15677888899999999999998876433221111 111235566666667777889999999999999998863
No 153
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=78.52 E-value=0.028 Score=46.61 Aligned_cols=48 Identities=4% Similarity=-0.003 Sum_probs=38.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
..+.||||.+.+.+ |++.--|++| =+.-|.+|+..+..+|| +-...+.
T Consensus 14 ~~~~C~iC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE----------PVTLPCNHTL---------CKPCFQSTVEKASLCCP--FCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS----------CEECTTSCEE---------CHHHHCCCCCTTTSBCT--TTCCBCH
T ss_pred CCCCCccCCcccCc----------eeEcCCCCHH---------hHHHHHHHHhHCcCCCC--CCCcccC
Confidence 45899999999986 5666668999 88999999988889999 6555543
No 154
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=77.06 E-value=0.77 Score=33.73 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKS 131 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN 131 (561)
.-+.|||+++.+.++.+ ....++...-|++| =.+-|.+|+.. ..+|| +-...+. ..++.|+
T Consensus 9 ~~~~C~IC~~~~~~~~~---~~~~~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~-~~~~~~~ 69 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQ---NGRLIVSTECGHVF---------CSQCLRDSLKN-ANTCP--TCRKKIN-HKRYHPI 69 (71)
T ss_dssp TCCBCTTTCCBHHHHHT---TTCCEEECTTSCEE---------EHHHHHHHHHH-CSBCT--TTCCBCC-CCSCCCC
T ss_pred CCCCCcccChhhhcccc---ccCCeEeCCCCChH---------hHHHHHHHHHc-CCCCC--CCCCccC-hhheeec
Confidence 56899999999986310 00000333347888 78899999976 47999 6666665 3344443
No 155
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.87 E-value=0.25 Score=36.80 Aligned_cols=50 Identities=4% Similarity=-0.051 Sum_probs=38.9
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQK-CQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~-c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
.....+.|||+++.+.+ ++.. .-|++| =..-|.+|+.. ..+|| +-..++.
T Consensus 11 ~~~~~~~C~IC~~~~~~----------p~~~~~CgH~f---------C~~Ci~~~~~~-~~~CP--~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLID----------ATTITECLHTF---------CKSCIVRHFYY-SNRCP--KCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSS----------CEECSSSCCEE---------CHHHHHHHHHH-CSSCT--TTCCCCC
T ss_pred hcCCCCCCCCCChHHHC----------cCEECCCCCHH---------HHHHHHHHHHc-CCcCC--CcCcccC
Confidence 44467999999999986 4654 457888 78899999965 78999 6666665
No 156
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=75.84 E-value=0.11 Score=44.61 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=37.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 56 AASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 56 ~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
-+.||||.+.+.+ ||...-|++| =.+-|.+|+.. ..+|| +-..++.
T Consensus 53 ~~~C~iC~~~~~~----------~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIE----------AVTLNCAHSF---------CSYCINEWMKR-KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSS----------EEEETTSCEE---------EHHHHHHHTTT-CSBCT--TTCCBCC
T ss_pred cCCCcccCcccCC----------ceECCCCCCc---------cHHHHHHHHHc-CCcCC--CCCCcCC
Confidence 3689999999986 5776668999 88999999975 67899 6666654
No 157
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=75.45 E-value=1.3e+02 Score=35.08 Aligned_cols=299 Identities=9% Similarity=-0.010 Sum_probs=159.4
Q ss_pred HHhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhcC--
Q 008560 149 RAESRNLITRLQIG--SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM--DSSSLEMKEKTVASIARVSMV-- 222 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~~~e~a~~~L~~La~~-- 222 (561)
...+..++..+.++ +.+.|.+|-..|..+-.. ..+...+...| .+.++.+|-.|+..|.+....
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 34455566555554 566687887777654322 12334444433 345688999999988876432
Q ss_pred ----CcchHHHHHhchhhHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCChHHHH
Q 008560 223 ----DSSKHVLIAEGLLLLNHLIRVLE---SGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTPGSQA 294 (561)
Q Consensus 223 ----~~~~~~i~~~g~~~i~~Lv~lL~---~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 294 (561)
++.+..| +.. .+..+...-. ..+..++...+.++..++..+ ...| .+.++.|+.++.+ ++....
T Consensus 80 ~~l~~e~k~~I-r~~--ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e 151 (1204)
T 3a6p_A 80 NGMSRLEKVYL-KNS--VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTE 151 (1204)
T ss_dssp GGSCHHHHHHH-HHH--HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHH
T ss_pred ccCCHHHHHHH-HHH--HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHH
Confidence 2222222 333 3443332211 146788999999998887642 1222 3567888888866 555677
Q ss_pred HHHHHHHHhhCC-------chhhH-----HHHhh--hhHHHHHHHhhc-------------------CCHHHHHHHHHHH
Q 008560 295 FAAGVLRNLAGF-------SEIKE-----NFIEE--NAVMVLLGLVAS-------------------GTALAQENVFGCL 341 (561)
Q Consensus 295 ~A~~aL~nLs~~-------~~~r~-----~i~~~--g~v~~Lv~lL~~-------------------~~~~~~~~a~~~L 341 (561)
.+..+|..|+.. ...|. .+.+. .++..+..++.. ++..+...++.++
T Consensus 152 ~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l 231 (1204)
T 3a6p_A 152 LVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTL 231 (1204)
T ss_dssp HHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHH
Confidence 788888888542 11122 12211 233334444432 1123555666666
Q ss_pred HHhcCCChHHHHHHHHhC--cHHHHHHhhhcCCCHHHHHHHHHHHHHhhc-C--hhhHHHHHhc---chHHHHHHHhc--
Q 008560 342 CNLVSDDESLKLLIVREG--GIGSLKSYWDSVSAVKSLEVAVELLSQLAS-C--LPIAEVLVSD---GFVVRLVNVLN-- 411 (561)
Q Consensus 342 ~~L~~~~~~~r~~~~~~g--~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~-~--~~~~~~l~~~---~~i~~Lv~lL~-- 411 (561)
.+...--+ -..+++.. .++.+..++.. +..+..|+.+|..+.. . ++.+..++.. .++..++..+.
T Consensus 232 ~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~ 306 (1204)
T 3a6p_A 232 AGYIDWVS--MSHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA 306 (1204)
T ss_dssp HTTTTTSC--HHHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTC
T ss_pred HHHHhccC--HHHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcC
Confidence 65543211 01223322 56666665553 4788999999999996 2 3333333332 12445555542
Q ss_pred ------CCCHHHHHHHHHHHHHHcCCHHHHHHHHh----------CCChHHHHHhccCCCHHHHHHHHHHHHHhhcc
Q 008560 412 ------CGVLSVRIAAARAVSMLGINSKARKEMGE----------CGCIGPLIKMLDGKAVEEKESAAKALSTLMLY 472 (561)
Q Consensus 412 ------~~~~~~~~~A~~aL~~L~~~~~~~~~i~~----------~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~ 472 (561)
..+.+..+.-+.++..+.. .....+.+ .+.++.++.+...++..+-..+......+..+
T Consensus 307 ~~~~~~e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 307 DGGGLVEKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 1123455555556665552 22222211 12366677677677777777766655545544
No 158
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.26 E-value=0.47 Score=36.67 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=45.2
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhh--hcchhHHHhccCCCC--Ccc
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRH--VRDGDVLIKSGVLQD--GDV 127 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~--~~~cp~l~t~~~l~~--~~~ 127 (561)
.....+.||||++.+.+- -..++..--|++| =.+-|.+|+... ..+|| +-..++.. -..
T Consensus 11 ~~~~~~~C~IC~~~~~~~------~~~~~~~~CgH~f---------C~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 11 ALREVLECPICMESFTEE------QLRPKLLHCGHTI---------CRQCLEKLLASSINGVRCP--FCSKITRITSLTQ 73 (88)
T ss_dssp CCCSCCBCTTTCCBCCTT------SSCEEECSSSCEE---------EHHHHHHHHHHCSSCBCCT--TTCCCBCCSSTTT
T ss_pred hccCCCCCccCCcccccc------CCCeEECCCCChh---------hHHHHHHHHHcCCCCcCCC--CCCCcccchhHHH
Confidence 334679999999998850 0002343347888 789999999875 58999 55554432 245
Q ss_pred cccccccccc
Q 008560 128 LIKSGVLQDG 137 (561)
Q Consensus 128 lipN~tLr~l 137 (561)
+.+|..+..+
T Consensus 74 l~~n~~~~~~ 83 (88)
T 2ct2_A 74 LTDNLTVLKS 83 (88)
T ss_dssp SEECTTTTSS
T ss_pred HHHHHHHHcc
Confidence 6667666554
No 159
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=73.94 E-value=89 Score=35.89 Aligned_cols=217 Identities=10% Similarity=0.063 Sum_probs=126.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-----
Q 008560 193 VVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESG-SGFAKERACVALQALSFSK----- 266 (561)
Q Consensus 193 ~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~----- 266 (561)
.+..++..+-+++++.+..|-..|..+-.++ + ++..+..+|.++ ++.+|..|+.+|.+.....
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~--aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------D--AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------C--HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------h--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 3445555555667777888888887665443 3 555555556544 8899999999999875531
Q ss_pred -chHHHHHhcCCHHHHHHHHhcC-----ChHHHHHHHHHHHHhhCC--chhhHHHHhhhhHHHHHHHhhcCCHHHHHHHH
Q 008560 267 -ENARAIGSRGGISSLLEICQAG-----TPGSQAFAAGVLRNLAGF--SEIKENFIEENAVMVLLGLVASGTALAQENVF 338 (561)
Q Consensus 267 -~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~A~~aL~nLs~~--~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~ 338 (561)
+.+..+. ...+..+.....++ ++......+.++..++.. ++. -...++-++.++.. +....+..+
T Consensus 98 ~e~~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 98 RNQCEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-CHHHHHHHH
Confidence 2222222 22344444333221 234445555566555432 111 13456666666653 334566677
Q ss_pred HHHHHhcCC--C---h--------HHHHHHHHh--CcHHHHHHhhhcCCCHHHHHHHHHHHHHhhcChhhHHHHHhcchH
Q 008560 339 GCLCNLVSD--D---E--------SLKLLIVRE--GGIGSLKSYWDSVSAVKSLEVAVELLSQLASCLPIAEVLVSDGFV 403 (561)
Q Consensus 339 ~~L~~L~~~--~---~--------~~r~~~~~~--g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~~~~~~~~l~~~~~i 403 (561)
.+|..|... + . ..+..+... ..++.+..++....++.+...++.+|..+.+.-. ...+.+.+.+
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll 249 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHH
Confidence 777776642 1 0 112223322 1233344455555566788889999999987322 3456677888
Q ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHHcC
Q 008560 404 VRLV-NVLNCGVLSVRIAAARAVSMLGI 430 (561)
Q Consensus 404 ~~Lv-~lL~~~~~~~~~~A~~aL~~L~~ 430 (561)
+.++ .+| .++..+..|+.+|..+..
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 8884 565 367899999999999875
No 160
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=73.64 E-value=24 Score=34.66 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhccccchhhHhhcCCCHHHHHHhccCCcc
Q 008560 419 IAAARAVSMLGINSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYAGNRKILRKDERGIVTVVQLLDPLIQ 498 (561)
Q Consensus 419 ~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 498 (561)
..+...|.-|..+.+...-+++.+++..+....+-.+.++.+.+..+|...+....-... .-..-+|.+++.+.-+++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence 344555655666778888999999999999999988888888888888777643322211 112457888888875544
Q ss_pred chhhHHHHHHHHHhcC-CchHHHHHHHcCchHHHHHhhccCcc-----ch--HHHHHhhccCcccc
Q 008560 499 NLDKKYPVAILAALVH-CRKCRKQMVAAGACLHLRKLVEMDIE-----GA--NKLLESLGRGKIWG 556 (561)
Q Consensus 499 ~~~k~~a~~~L~~La~-~~~~r~~i~~~g~i~~L~~Ll~~~~~-----~a--kk~~~~l~~~~~~~ 556 (561)
.+.--..-+.|.|... -...++.-+..|+++.|.+.+-...+ +| ||++.-+-.|-+|.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRa 404 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRT 404 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHH
Confidence 3332236788999874 45566777899999999887633222 22 57777766666554
No 161
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=73.63 E-value=0.78 Score=32.81 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=38.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCcccccc
Q 008560 56 AASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKS 131 (561)
Q Consensus 56 ~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN 131 (561)
.+.|||+++.+.++... ...++..--|+.| =.+-|.+|+.. ..+|| +-...+.. .++.|+
T Consensus 3 ~~~C~IC~~~~~~~~~~---~~~~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~~-~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQN---GRLIVSTECGHVF---------CSQCLRDSLKN-ANTCP--TCRKKINH-KRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHT---TCCEEEETTSCEE---------EHHHHHHHHHH-CSBCT--TTCCBCTT-TCEEEC
T ss_pred CCCCCccChhhhCcccc---CCCEEeCCCCCch---------hHHHHHHHHHc-CCCCC--CCCccCCc-cceeee
Confidence 47899999999863100 0000233346778 78899999976 78999 66666653 344443
No 162
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.89 E-value=8 Score=33.78 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=58.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++..|.+-|.++++.++..|+..|-.+..+ ...++..+.....++.|++++....++.+++.++..|..-+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3566677778888888888888888887764 466888888888999999999876677999999998887764
No 163
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=71.69 E-value=56 Score=31.47 Aligned_cols=147 Identities=10% Similarity=0.128 Sum_probs=87.8
Q ss_pred hHHHHHHHhcCC------CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhcC
Q 008560 151 ESRNLITRLQIG------SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLM--DSSSLEMKEKTVASIARVSMV 222 (561)
Q Consensus 151 ~v~~Lv~~L~~~------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~~~e~a~~~L~~La~~ 222 (561)
........+++| +.+.-..|+..|..++.+ -++-..|++.. .+.|-.++ ....+.+++.|++++..--.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 344445555555 344456789989888754 34444555422 33333333 445678999999999875554
Q ss_pred -CcchHHHHHhchhhHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCCchHHHHHhcCCHHHHHHHHhcC--ChHH
Q 008560 223 -DSSKHVLIAEGLLLLNHLIRVLES-------GSGFAKERACVALQALSFSKENARAIGSRGGISSLLEICQAG--TPGS 292 (561)
Q Consensus 223 -~~~~~~i~~~g~~~i~~Lv~lL~~-------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~ 292 (561)
+.....|.+.-...+..+..-|.. .+......-..+|..|..++. .+ ...++..|.+++.-. ++.+
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHH
Confidence 555555554211255555544433 244566677788888888752 12 245778888888776 7777
Q ss_pred HHHHHHHHHHh
Q 008560 293 QAFAAGVLRNL 303 (561)
Q Consensus 293 ~~~A~~aL~nL 303 (561)
+..++..+..+
T Consensus 177 k~Kvl~li~d~ 187 (315)
T 3qml_C 177 QIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666655544
No 164
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.77 E-value=9.7 Score=32.26 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVS 220 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La 220 (561)
...++.+..+|+++++..+..|+.-|-.+.+.. +.....+....++..|+.+++..++.+++..+..+..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456788889999999999999998776666654 344556667788888999988778999999999887765
No 165
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.30 E-value=15 Score=31.45 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=59.2
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 008560 148 VRAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDS------SSLEMKEKTVASIARVS 220 (561)
Q Consensus 148 ~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~e~a~~~L~~La 220 (561)
....++.+..+|+++++..+..|+.-|-.+.+.. +.....+.+..++..|++++.. .++.+++.++..+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3556788899999999999999999887777764 4566777888999999999874 36899999998887765
No 166
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.24 E-value=0.36 Score=34.73 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=34.5
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhh--hhcchh
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDR--HVRDGD 114 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~--~~~~cp 114 (561)
....+.|||+++.+.+ |+..--|++| =+.-|.+|+.. +..+||
T Consensus 17 ~~~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~~~~~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDILQK----------PVTIDCGHNF---------CLKCITQIGETSCGFFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBCSS----------CEECTTSSEE---------CHHHHHHHHHHCSSCCCCS
T ss_pred CccCCCCCcCCchhCC----------eEEeCCCCcc---------hHHHHHHHHHcCCCCCcCc
Confidence 4467999999999986 4555567889 78999999985 566888
No 167
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.33 E-value=0.23 Score=37.94 Aligned_cols=56 Identities=7% Similarity=-0.050 Sum_probs=41.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccccccc
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSGVL 134 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~tL 134 (561)
..+.||||++.+.+ |+..--|++| -+.-|.+|+.. ..+|| +-..++. ..+.||..+
T Consensus 14 ~~~~C~IC~~~~~~----------p~~~~CgH~f---------C~~Ci~~~~~~-~~~CP--~Cr~~~~--~~~~~~~~l 69 (81)
T 2csy_A 14 IPFRCFICRQAFQN----------PVVTKCRHYF---------CESCALEHFRA-TPRCY--ICDQPTG--GIFNPAKEL 69 (81)
T ss_dssp CCSBCSSSCSBCCS----------EEECTTSCEE---------EHHHHHHHHHH-CSBCS--SSCCBCC--SCCEECHHH
T ss_pred CCCCCcCCCchhcC----------eeEccCCCHh---------HHHHHHHHHHC-CCcCC--CcCcccc--ccCCcHHHH
Confidence 56899999999986 4555557889 88999999964 77999 6666654 345555444
No 168
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.94 E-value=15 Score=31.95 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=57.6
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDS-SSLEMKEKTVASIARVS 220 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~e~a~~~L~~La 220 (561)
...++.+..+|+.+++..+..|+.-|-.+.+.. ......|....++..|++++.. .++.+++.++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 456778889999999999999998777777764 4456677778899999998875 46899999998887655
No 169
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.88 E-value=1.3 Score=31.90 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=38.2
Q ss_pred CccchhhHH-HHHHHHHHHHHHHHHH----hhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccc
Q 008560 56 AASNTLCLD-HVHSVSHTLIEAASVA----QKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIK 130 (561)
Q Consensus 56 ~~~~p~~~~-~~~~~~~~l~~~~~~v----~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lip 130 (561)
-+.|||+++ .+.+ ++ ..--|++| =..-|.+|+..+...|| +-..++.. .++.|
T Consensus 3 ~~~C~IC~~~~~~~----------~~~~~~~~~CgH~f---------C~~Ci~~~~~~~~~~CP--~Cr~~~~~-~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRN----------PSLKLMVNVCGHTL---------CESCVDLLFVRGAGNCP--ECGTPLRK-SNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHC----------SSCCEEECTTCCCE---------EHHHHHHHHHTTSSSCT--TTCCCCSS-CCCEE
T ss_pred CCcCCcCCCCccCC----------CccCeecCCCCCHh---------HHHHHHHHHHcCCCcCC--CCCCcccc-cccee
Confidence 478999999 8886 32 22346888 67899999888788999 66666653 34444
Q ss_pred c
Q 008560 131 S 131 (561)
Q Consensus 131 N 131 (561)
+
T Consensus 61 ~ 61 (65)
T 1g25_A 61 Q 61 (65)
T ss_dssp E
T ss_pred e
Confidence 3
No 170
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.59 E-value=9 Score=32.47 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhhc
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDGKAVEEKESAAKALSTLML 471 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~ 471 (561)
++..|.+.|.++++.++..|...|-.+.. ......++....++..|++++...++.|+++...++...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 46777778888899999999877776665 35667777777778888888876788999999998887764
No 171
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=63.83 E-value=2.2e+02 Score=33.11 Aligned_cols=215 Identities=13% Similarity=0.055 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---C----chHH-----HH
Q 008560 205 SLEMKEKTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFS---K----ENAR-----AI 272 (561)
Q Consensus 205 ~~~~~e~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~----~~~~-----~i 272 (561)
.+.++.+.+.++..++..+--..+ .+ .++.|+.++++ +...++.+..+|..|+++ . ..+. .+
T Consensus 109 ~~~vr~kla~~la~Ia~~d~p~~W---p~--ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l 182 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKREWPQHW---PD--MLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTL 182 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTTC---TT--HHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcccc---hH--HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 477888888888887754211111 35 78888888876 455677788888887643 1 1111 12
Q ss_pred Hhc--CCHHHHHHHHhcC-------------------ChHHHHHHHHHHHHhhCCchhhHHHHhh--hhHHHHHHHhhcC
Q 008560 273 GSR--GGISSLLEICQAG-------------------TPGSQAFAAGVLRNLAGFSEIKENFIEE--NAVMVLLGLVASG 329 (561)
Q Consensus 273 ~~~--g~i~~Lv~ll~~~-------------------~~~~~~~A~~aL~nLs~~~~~r~~i~~~--g~v~~Lv~lL~~~ 329 (561)
... ..++.+..++.+. +......++.++.+....-... .+.+. ..++.++.++.
T Consensus 183 ~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~-~i~~~~~~ll~~l~~~l~-- 259 (1204)
T 3a6p_A 183 TQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS-HITAENCKLLEILCLLLN-- 259 (1204)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHHTTTSHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH-HHHhccchHHHHHHHHcC--
Confidence 221 1223333333321 1223455666666554433221 22232 36777776665
Q ss_pred CHHHHHHHHHHHHHhcCCC--hHHHHHHHHh---CcHHHHHHhhh-------cCCCHHHHHHHHHHHHHhhcChhhHHHH
Q 008560 330 TALAQENVFGCLCNLVSDD--ESLKLLIVRE---GGIGSLKSYWD-------SVSAVKSLEVAVELLSQLASCLPIAEVL 397 (561)
Q Consensus 330 ~~~~~~~a~~~L~~L~~~~--~~~r~~~~~~---g~i~~Lv~lL~-------~~~~~~~~e~a~~aL~~L~~~~~~~~~l 397 (561)
++.++..|+.||..+.... +..+..++.. ..+..++.... .+.+.+..+..++++..+.. . ...+
T Consensus 260 ~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~--~-l~~l 336 (1204)
T 3a6p_A 260 EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN--Q-LCAL 336 (1204)
T ss_dssp CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH--H-HHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH--H-HHHH
Confidence 4578999999999999744 3222222221 11334444432 11123455555556665552 1 1111
Q ss_pred Hh-----------cchHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 008560 398 VS-----------DGFVVRLVNVLNCGVLSVRIAAARAVSMLGIN 431 (561)
Q Consensus 398 ~~-----------~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 431 (561)
++ .++++.++.+..+.+..+-..+...-..+..+
T Consensus 337 ~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 337 LGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11 14577777777777777766666544446543
No 172
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.29 E-value=2.5 Score=30.55 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCC
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVL 122 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l 122 (561)
..+..+.|||+++.+.++... ...++..--|+.| =.+-|.+|+.. ..+|| +-...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~---~~~~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~ 66 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQN---GRLIVSTECGHVF---------CSQCLRDSLKN-ANTCP--TCRKKI 66 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTT---TCCEEECSSSCEE---------EHHHHHHHHHH-CSSCT--TTCCCC
T ss_pred CCCCCCCCcccCccccccccc---cCCeEeCCCCChh---------cHHHHHHHHHc-CCCCC--CCCCcc
Confidence 344679999999999863100 0000233346788 78899999976 77999 554443
No 173
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=63.24 E-value=2e+02 Score=32.54 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhc--CCc----chHHHHHhc
Q 008560 163 SAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSS---SLEMKEKTVASIARVSM--VDS----SKHVLIAEG 233 (561)
Q Consensus 163 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~e~a~~~L~~La~--~~~----~~~~i~~~g 233 (561)
+++.|.+|-..|..+ ++++ ++......+|..+ ++.++-.|+.+|.+.-. +++ .+. -++..
T Consensus 21 d~~~r~~A~~~L~~~-q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSL-RSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ-MIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHH-HHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHH-HcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-HHHHH
Confidence 677888887777554 3333 3444556666543 68888888888876433 233 222 22333
Q ss_pred hhhHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCCHHHHHHHHhcCCh-HHHHHHHHHHHHhhCC----
Q 008560 234 LLLLNHLIRVL-ESGSGFAKERACVALQALSFSK-ENARAIGSRGGISSLLEICQAGTP-GSQAFAAGVLRNLAGF---- 306 (561)
Q Consensus 234 ~~~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~A~~aL~nLs~~---- 306 (561)
.+..+.+.- ..++..++.+.+.+|..+.... ...| .+.++.|+.++..+++ ......+++|..++..
T Consensus 90 --ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 90 --VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp --HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence 344443310 0235678888888888886531 1111 2467777777776544 3344445555533211
Q ss_pred -----c-------hhhHHHHhh---hhHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHh
Q 008560 307 -----S-------EIKENFIEE---NAVMVLLGLVA----SGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSY 367 (561)
Q Consensus 307 -----~-------~~r~~i~~~---g~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~l 367 (561)
. +.+..|.+. .+++....+|. +.+..+...++.||.....--+ -..+++...++.+.++
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~ 241 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSF 241 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHH
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHH
Confidence 0 012223221 12334444443 3667788889999888776322 2345566778888888
Q ss_pred hhcCCCHHHHHHHHHHHHHhhc---ChhhHHHHHhcchHHHHHHHhc--CCCHHHHHHHHHHHHHHcC-------C----
Q 008560 368 WDSVSAVKSLEVAVELLSQLAS---CLPIAEVLVSDGFVVRLVNVLN--CGVLSVRIAAARAVSMLGI-------N---- 431 (561)
Q Consensus 368 L~~~~~~~~~e~a~~aL~~L~~---~~~~~~~l~~~~~i~~Lv~lL~--~~~~~~~~~A~~aL~~L~~-------~---- 431 (561)
+.. +..++.|+.+|..+.. .++.+..+++.-.+...+..+. ..+.+..+.-++.+..++. .
T Consensus 242 L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 242 LQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp TTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred cCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 865 6899999999999884 4444444443211222222222 3455554444433333321 1
Q ss_pred -HHHHHHHHh--CCChHHHHHhccCCCHHHHHHHHHHHHHhh
Q 008560 432 -SKARKEMGE--CGCIGPLIKMLDGKAVEEKESAAKALSTLM 470 (561)
Q Consensus 432 -~~~~~~i~~--~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~ 470 (561)
++.+..... .+.++.++..+..+++++-..+...+..+.
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 111111100 145666666666666666555544444433
No 174
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.73 E-value=20 Score=30.70 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=58.6
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDD-KNVVIAVAQGVVPVLVKLMDS------SSLEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~------~~~~~~e~a~~~L~~La~ 221 (561)
...++.+..+|++.++..+..|+.-|-.+.+... .....|....++..|++++.. .++.+++..+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999997777777544 455667788899999999963 468899999998887653
No 175
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.59 E-value=1.1e+02 Score=28.73 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=73.1
Q ss_pred HHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 008560 146 EAVRAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSS 225 (561)
Q Consensus 146 ~~~~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~ 225 (561)
...+..+-+++..-+..+.+.|...+....+++-+++.. . =..+++.++.+-.+.+.++|...+..+........
T Consensus 11 ~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~--l--l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~- 85 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE--L--AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV- 85 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG--G--HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh--H--HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-
Confidence 345677888888887755589999999999977664322 1 14556777777667778899988888877652211
Q ss_pred hHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008560 226 KHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQAL 262 (561)
Q Consensus 226 ~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L 262 (561)
-.... +++.|..+|++.++.+...+..+..++
T Consensus 86 ---~l~~~--~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 86 ---ELLPH--VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---GGHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11233 677888888877777777666665444
No 176
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=60.65 E-value=18 Score=31.80 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=58.5
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPVLVKLMDS------SSLEMKEKTVASIARVSM 221 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~~~e~a~~~L~~La~ 221 (561)
...++.+..+|+++++..+..|+.-|-.+.+.+ ......+.+..++..|+.++.. .++.+++.++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999777777764 4566677788999999999863 358899999998877653
No 177
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.58 E-value=0.79 Score=32.07 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=33.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhh--hhcchh
Q 008560 53 FPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDR--HVRDGD 114 (561)
Q Consensus 53 ~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~--~~~~cp 114 (561)
....+.|||+++.+.++ +..--|++| =++-|.+|+.. ...+||
T Consensus 12 ~~~~~~C~IC~~~~~~p----------~~~~CgH~f---------C~~Ci~~~~~~~~~~~~CP 56 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----------VIIECGHNF---------CKACITRWWEDLERDFPCP 56 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----------CCCSSCCCC---------CHHHHHHHTTSSCCSCCCS
T ss_pred cccCCCCccCCcccCcc----------EeCCCCCcc---------CHHHHHHHHHhcCCCCCCC
Confidence 34678999999999863 555457889 78899999865 577888
No 178
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.18 E-value=16 Score=32.18 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=58.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhc-----CCCHHHHHHHHHHHHHhhc
Q 008560 318 AVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDS-----VSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~-----~~~~~~~e~a~~aL~~L~~ 389 (561)
++..|.+-+.+++..++..|+..|-.+..+ ...++..+.+...++.|++++.. ..+..+++.++..|..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566677888888889999999988888775 45678888888899999999863 2456899999999888774
No 179
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=57.98 E-value=26 Score=29.93 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhhc
Q 008560 401 GFVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECGCIGPLIKMLDG------KAVEEKESAAKALSTLML 471 (561)
Q Consensus 401 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~aL~~L~~ 471 (561)
.++..|.+-|.++++.++..|...|-.+.. ......++....++..|++++.. .+..|++++..++..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 346777788889999999999988888875 46788888888899999999874 367899999988887764
No 180
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.59 E-value=31 Score=29.50 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=57.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhcC-CChHHHHHHHHhCcHHHHHHhhhc-----CCCHHHHHHHHHHHHHhhc
Q 008560 318 AVMVLLGLVASGTALAQENVFGCLCNLVS-DDESLKLLIVREGGIGSLKSYWDS-----VSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~r~~~~~~g~i~~Lv~lL~~-----~~~~~~~e~a~~aL~~L~~ 389 (561)
++..|.+-+.+.++.++..|+..|-.+.. ....+...+.....+..|++++.. ..+..+++.++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56667777888888889888888887765 345678888888899999999964 2457899999999988774
No 181
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=56.04 E-value=3 Score=34.65 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=37.6
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 54 PAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 54 p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
+..+.|||+++.+.++.+ ....++..--|++| =.+-|.+|+.. ..+|| +-...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~---~~~~~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQ---NGRLIVSTECGHVF---------CSQCLRDSLKN-ANTCP--TCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHH---TTCCEEEETTCCEE---------EHHHHHHHHTT-CSBCT--TTCCBCT
T ss_pred CCCCCCcccChhhhCccc---cccCeEecCCCChh---------hHHHHHHHHHh-CCCCC--CCCCcCc
Confidence 357899999999996300 00000444457899 88999999976 46999 6666655
No 182
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.03 E-value=21 Score=32.86 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=58.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 317 NAVMVLLGLVASGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 317 g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
.++..|.+-|.+.++.++..|+..|-.+..+ ...+...+.....++.|.+++....+..+++.++.+|...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3566677788888888899888888877653 345777788888888899998877778899999999988774
No 183
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.84 E-value=0.94 Score=33.48 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=38.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhh--hhhcchhHHHhccCCC
Q 008560 52 DFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLD--RHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 52 ~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~--~~~~~cp~l~t~~~l~ 123 (561)
..+..+.|||+++.+.+ ++..--|++| =++-|.+|+. .+...|| +-.+++.
T Consensus 16 ~~~~~~~C~IC~~~~~~----------~~~~~CgH~f---------C~~Ci~~~~~~~~~~~~CP--~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK----------PVTIDCGHNF---------CLKCITQIGETSCGFFKCP--LCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSS----------EEECTTCCEE---------EHHHHHHHCSSSCSCCCCS--SSCCCCC
T ss_pred hCccCCEeccCCcccCC----------eEEcCCCChh---------hHHHHHHHHHcCCCCCCCC--CCCCcCC
Confidence 34467999999999986 4555557889 8899999997 3577999 6555543
No 184
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=51.36 E-value=1.2e+02 Score=34.75 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHhhcC--hhh-HHHHHhcchHHHHHHHhcCCC---HH--HHHHHHHHHHHHcC----CHHHHHHHH
Q 008560 372 SAVKSLEVAVELLSQLASC--LPI-AEVLVSDGFVVRLVNVLNCGV---LS--VRIAAARAVSMLGI----NSKARKEMG 439 (561)
Q Consensus 372 ~~~~~~e~a~~aL~~L~~~--~~~-~~~l~~~~~i~~Lv~lL~~~~---~~--~~~~A~~aL~~L~~----~~~~~~~i~ 439 (561)
.+....+.++.+++.++.+ ++. ...+. .+++.|+.+..... .. ++.....++++.+. +++.-+.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-- 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-- 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--
Confidence 3468899999999999862 211 11111 24455555543321 12 22222234444332 2232222
Q ss_pred hCCChHHHHHhccCCCHHHHHHHHHHHHHhhccc
Q 008560 440 ECGCIGPLIKMLDGKAVEEKESAAKALSTLMLYA 473 (561)
Q Consensus 440 ~~g~i~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~ 473 (561)
.+..|++.+...++.++++|+.++..++...
T Consensus 567 ---vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 567 ---VVNKLFEFMHETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp ---HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4778888888889999999999999998543
No 185
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.18 E-value=19 Score=32.99 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHhCcHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 008560 318 AVMVLLGLVASGTALAQENVFGCLCNLVSDD-ESLKLLIVREGGIGSLKSYWDSVSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~r~~~~~~g~i~~Lv~lL~~~~~~~~~e~a~~aL~~L~~ 389 (561)
++..|.+-|.+.++.++..|+..|-.+..+- ..++..+.+...++.|++++.+..+..+++.++..+..-+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5566777788888889999998888887653 45777788778889999988776667889888888877663
No 186
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.90 E-value=25 Score=32.36 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=56.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhc
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALSTLML 471 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~ 471 (561)
++..|.+-|.+.++.++..|...|-.+..| .....++....++..|.+++. ..++.|++++..++...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 467788888899999999999888888764 567777777777888888886 4578899999999888774
No 187
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.23 E-value=43 Score=30.52 Aligned_cols=70 Identities=7% Similarity=-0.024 Sum_probs=55.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhhc
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGIN--SKARKEMGECGCIGPLIKMLD-GKAVEEKESAAKALSTLML 471 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~aL~~L~~ 471 (561)
++..|.+-|.++++.++..|...|-.+..| .....++.....+..|+.++. ..+..+++++.+++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456777788889999999999888888764 556777777778888888886 4568899999888877663
No 188
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=37.41 E-value=94 Score=26.11 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=49.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHhCC-ChHHHHHhccCCC--------HHHHHHHHHHHHHhh
Q 008560 402 FVVRLVNVLNCGVLSVRIAAARAVSMLGI--NSKARKEMGECG-CIGPLIKMLDGKA--------VEEKESAAKALSTLM 470 (561)
Q Consensus 402 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~~i~~~g-~i~~Lv~ll~~~~--------~~v~~~A~~aL~~L~ 470 (561)
+++.|.+-|...++.++..|..+|-.||. ++.++..+.+.- .|..|..+-...+ ..||..|.+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 45778888888889999999999999997 577787777662 2333332222111 468898888887776
Q ss_pred cc
Q 008560 471 LY 472 (561)
Q Consensus 471 ~~ 472 (561)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 189
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.73 E-value=64 Score=27.66 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=53.6
Q ss_pred hHHHHHHHhh-cCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHhCcHHH-HHHhhhc--CCCHHHHHHHHHHHHHhhc
Q 008560 318 AVMVLLGLVA-SGTALAQENVFGCLCNLVSD-DESLKLLIVREGGIGS-LKSYWDS--VSAVKSLEVAVELLSQLAS 389 (561)
Q Consensus 318 ~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~r~~~~~~g~i~~-Lv~lL~~--~~~~~~~e~a~~aL~~L~~ 389 (561)
++..+.+-|. .++..++..|+..|-.+..+ .+.++..+.+...++. |++++.. ..+..+++.++..|..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5556667776 46778888888888877764 3667888888888988 8888854 2345889999888887664
No 190
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.34 E-value=90 Score=26.71 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHhHHHHHHHhcC-CCHHHHHHHHHHHHHhhccC-chhhHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHHh
Q 008560 149 RAESRNLITRLQI-GSAESKNSAMDSLLGLLQED-DKNVVIAVAQGVVPV-LVKLMDS---SSLEMKEKTVASIARVS 220 (561)
Q Consensus 149 ~~~v~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~v~~-Lv~lL~~---~~~~~~e~a~~~L~~La 220 (561)
...++.+..+|++ +++..+..|+.-|-.+.+.+ +.....+.+..++.. |++++.. +...+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4567788999984 78889999999777777764 556666778888987 8888843 23688999988887655
No 191
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.24 E-value=42 Score=31.40 Aligned_cols=102 Identities=8% Similarity=0.007 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhc--------CChHHHHHHHHHHHHhhCCc-hhhHHHH
Q 008560 245 ESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQA--------GTPGSQAFAAGVLRNLAGFS-EIKENFI 314 (561)
Q Consensus 245 ~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~--------~~~~~~~~A~~aL~nLs~~~-~~r~~i~ 314 (561)
.++++..+..+++++.|+..++. .+..+..+.....+++.+.+ .+...+-+++..+.|++... ..+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 35678899999999999999887 66666554334455554422 13345677888889998642 1111
Q ss_pred hhhhHHHHHHHhhc---------CCHHHHHHHHHHHHHhcCCCh
Q 008560 315 EENAVMVLLGLVAS---------GTALAQENVFGCLCNLVSDDE 349 (561)
Q Consensus 315 ~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~~~ 349 (561)
+......+++.+.. .+.+....++.+|.++...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12233445555542 255777888888888876543
No 192
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=34.85 E-value=1.8e+02 Score=29.38 Aligned_cols=132 Identities=8% Similarity=-0.006 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCch-HHHHHhcCCHHHHHHHHhcC-
Q 008560 211 KTVASIARVSMVDSSKHVLIAEGLLLLNHLIRVLESGSGFAKERACVALQALSFSKEN-ARAIGSRGGISSLLEICQAG- 288 (561)
Q Consensus 211 ~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~ll~~~- 288 (561)
-++.+|..+..+...-. - ....+-..+.+.++..+..+.+++.|+..++.. +..+........+++.+...
T Consensus 245 PaLDLLRl~v~~p~~~~-----~--l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l 317 (425)
T 3pst_A 245 PAYDIVRLIVKKLPYSS-----D--IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEF 317 (425)
T ss_dssp HHHHHHHHHGGGCSCGG-----G--GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHcCCchHH-----H--HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHh
Confidence 35666666655543211 1 122222334456788999999999999988774 44443333345666655321
Q ss_pred -------ChHHHHHHHHHHHHhhCCc-hhhHHHHhhhhHHHHHHHhh---------cCCHHHHHHHHHHHHHhcCCChHH
Q 008560 289 -------TPGSQAFAAGVLRNLAGFS-EIKENFIEENAVMVLLGLVA---------SGTALAQENVFGCLCNLVSDDESL 351 (561)
Q Consensus 289 -------~~~~~~~A~~aL~nLs~~~-~~r~~i~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~~~~~~ 351 (561)
+...+.+++..+.|++... ..+.. ...+..+++.+. ..+.+....++.+|.+|...++..
T Consensus 318 ~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 318 SQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 2345677888889998643 11111 223445555554 246688888999999988655543
Q ss_pred H
Q 008560 352 K 352 (561)
Q Consensus 352 r 352 (561)
+
T Consensus 395 ~ 395 (425)
T 3pst_A 395 R 395 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=34.14 E-value=5.7e+02 Score=29.08 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=111.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCCHHHHHHHHhc----CChHHHHHHHHHHHHh----hCC
Q 008560 236 LLNHLIRVLESGSGFAKERACVALQALSFS-KENARAIGSRGGISSLLEICQA----GTPGSQAFAAGVLRNL----AGF 306 (561)
Q Consensus 236 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~A~~aL~nL----s~~ 306 (561)
++..+.+.++++.....+ |+.+|..+... ..+.+ .+..+..++.+ .++..+..+.-++.+| |..
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 667777777776433222 44444332221 11221 34455556654 2444555455444444 433
Q ss_pred chhhH-HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHhCcHHHHHHhhhc------CCCHHHHHH
Q 008560 307 SEIKE-NFIEENAVMVLLGLVASGTALAQENVFGCLCNLVSDDESLKLLIVREGGIGSLKSYWDS------VSAVKSLEV 379 (561)
Q Consensus 307 ~~~r~-~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~r~~~~~~g~i~~Lv~lL~~------~~~~~~~e~ 379 (561)
...+. .++ .-+...|.+.+..++..-+..++.+|.|+... ..++.|.+++.. +.+.+++..
T Consensus 430 ~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~a 497 (1056)
T 1lsh_A 430 TVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAE 497 (1056)
T ss_dssp CSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHH
Confidence 22211 111 12333445556677777788889999998653 357778888753 223467788
Q ss_pred HHHHHHHhhcC-hhhHHHHHhcchHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHhcc-CCC
Q 008560 380 AVELLSQLASC-LPIAEVLVSDGFVVRLVNVL--NCGVLSVRIAAARAVSMLGINSKARKEMGECGCIGPLIKMLD-GKA 455 (561)
Q Consensus 380 a~~aL~~L~~~-~~~~~~l~~~~~i~~Lv~lL--~~~~~~~~~~A~~aL~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~ 455 (561)
|+.+|+.++.. |.. +-+.+..+. ...+.++|..|..+|..-.=+... +..+...+. +.+
T Consensus 498 Ai~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~---------l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 498 AIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVAL---------VSMVAVRLRREPN 560 (1056)
T ss_dssp HHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHH---------HHHHHHHHTTCSC
T ss_pred HHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHH---------HHHHHHHHhhCch
Confidence 99999999852 221 234556666 345789999998888643322222 233344444 356
Q ss_pred HHHHHHHHHHHHHhhc
Q 008560 456 VEEKESAAKALSTLML 471 (561)
Q Consensus 456 ~~v~~~A~~aL~~L~~ 471 (561)
.+|.......|.+++.
T Consensus 561 ~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777777774
No 194
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.83 E-value=1.1 Score=33.12 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=35.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
..+.|||+++.+.++ +..--|+.| =.+-|.+|+..+ .+|| +-...+.
T Consensus 14 ~~~~C~IC~~~~~~~----------~~~~CgH~f---------C~~Ci~~~~~~~-~~CP--~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP----------VSLPCKHVF---------CYLCVKGASWLG-KRCA--LCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE----------EEETTTEEE---------EHHHHHHCTTCS-SBCS--SSCCBCC
T ss_pred CCCCCccCCcccCCC----------EEccCCCHH---------HHHHHHHHHHCC-CcCc--CcCchhC
Confidence 568999999999863 444446778 788999999764 8999 6555554
No 195
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=32.32 E-value=7.9 Score=31.21 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCCccchhhHHHHHHHHHHHH-------HHHHH--HhhhcCCCCCCCcchhhhhHHHHHHHhhh----hhcchhHHHhcc
Q 008560 54 PAAASNTLCLDHVHSVSHTLI-------EAASV--AQKCQGVSLTEGKLKTQSDIDSVLAKLDR----HVRDGDVLIKSG 120 (561)
Q Consensus 54 p~~~~~p~~~~~~~~~~~~l~-------~~~~~--v~~c~~~~y~~g~l~~~sd~~~i~~~l~~----~~~~cp~l~t~~ 120 (561)
+.-..||||++-+.+....-. +.... ...| ++.| -++-|..|+.. ...+|| +=..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~H~F---------h~~Ci~~wl~~~~~~~~~~CP--~CR~ 90 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC-SHAF---------HLLCLLAMYCNGNKDGSLQCP--SCKT 90 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS-CCEE---------CHHHHHHHHHHTCCSSCCBCT--TTCC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCC-CCcc---------cHHHHHHHHHcccCCCCCcCC--CCCC
Confidence 345799999999864200000 00000 1224 4667 78899999963 467999 5555
Q ss_pred CCC
Q 008560 121 VLQ 123 (561)
Q Consensus 121 ~l~ 123 (561)
+..
T Consensus 91 ~~~ 93 (114)
T 1v87_A 91 IYG 93 (114)
T ss_dssp BSS
T ss_pred ccC
Confidence 444
No 196
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.15 E-value=4e+02 Score=26.40 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHhhCCchhhHHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008560 275 RGGISSLLEICQAGTPGSQAFAAGVLRNLAGFSEIKENFIEENAVMVLLGLVASGTALAQENVFGCLCNL 344 (561)
Q Consensus 275 ~g~i~~Lv~ll~~~~~~~~~~A~~aL~nLs~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~L 344 (561)
.+.++.++.+..+.+...++..+..|...+... ..+. ..+++.|..++.+++..+...++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IELL-LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346888888888888888988888887776421 1111 34667778888777777766666666554
No 197
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.65 E-value=47 Score=31.06 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhhcChh-hHHHHHhcchHHHHHHHhcC--------CCHHHHHHHHHHHHHHcCCH-HHHHHHHhCC
Q 008560 373 AVKSLEVAVELLSQLASCLP-IAEVLVSDGFVVRLVNVLNC--------GVLSVRIAAARAVSMLGINS-KARKEMGECG 442 (561)
Q Consensus 373 ~~~~~e~a~~aL~~L~~~~~-~~~~l~~~~~i~~Lv~lL~~--------~~~~~~~~A~~aL~~L~~~~-~~~~~i~~~g 442 (561)
++..+-.++++++|+-.++. ++..+.++.....+++.+.+ .+..++..++..+.|++..- ..+. +..
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e 179 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 179 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHH
Confidence 46788899999999999888 67766554445555554421 24578888899999998510 0000 122
Q ss_pred ChHHHHHhccC---------CCHHHHHHHHHHHHHhhccccchh
Q 008560 443 CIGPLIKMLDG---------KAVEEKESAAKALSTLMLYAGNRK 477 (561)
Q Consensus 443 ~i~~Lv~ll~~---------~~~~v~~~A~~aL~~L~~~~~~~~ 477 (561)
....++.++.. .+++....+..+|.+|...++..+
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~ 223 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 223 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 23444554441 366777788888888886544433
No 198
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=26.71 E-value=16 Score=29.99 Aligned_cols=63 Identities=8% Similarity=0.021 Sum_probs=39.7
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCCCCccccccc
Q 008560 54 PAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQDGDVLIKSG 132 (561)
Q Consensus 54 p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~~~~~lipN~ 132 (561)
+..+.|||+++.+.++.+.-+ .++..--|+.| =..-|.+|++. ..+|| +=...+. .++++|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~---~~~~~~CgH~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~-~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGR---LIVSTECGHVF---------CSQCLRDSLKN-ANTCP--TCRKKIN-HKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTC---CEEEETTSBEE---------EHHHHHHHHHH-CSBCT--TTCCBCC-GGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCc---ceEeCCCCChh---------hHHHHHHHHHc-CCCCC--CCCCcCC-hhcceeee
Confidence 456889999999986311000 00222236778 77899999976 57999 6666665 34555543
No 199
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.47 E-value=1.2e+02 Score=30.02 Aligned_cols=129 Identities=8% Similarity=-0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHhchhhHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCCHHHHHHHHhc-
Q 008560 211 KTVASIARVSMVDSSKHVLIAEGLLLLNHLI-RVLESGSGFAKERACVALQALSFSKE-NARAIGSRGGISSLLEICQA- 287 (561)
Q Consensus 211 ~a~~~L~~La~~~~~~~~i~~~g~~~i~~Lv-~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ll~~- 287 (561)
-++..|..+..+...- + .+..++ ..+.+.++..+..+.+++.|+-.++. .+..+........+++.+..
T Consensus 182 P~LDLLRl~v~~~~~~------~--~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 182 PAYDIVRLIVKKLPYS------S--DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp HHHHHHHHHGGGCSCG------G--GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred hHHHHHHHHhcCCChH------H--HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 3556666665554321 2 222222 23345678899999999999998877 44444332223444544421
Q ss_pred -------CChHHHHHHHHHHHHhhCCch-hhHHHHhhhhHHHHHHHhh---------cCCHHHHHHHHHHHHHhcCCChH
Q 008560 288 -------GTPGSQAFAAGVLRNLAGFSE-IKENFIEENAVMVLLGLVA---------SGTALAQENVFGCLCNLVSDDES 350 (561)
Q Consensus 288 -------~~~~~~~~A~~aL~nLs~~~~-~r~~i~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~~~~~ 350 (561)
.+...+.+++..+.|++.... .+.. ...+..+++.+. ..+.+....++.+|.+|...++.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 123456778888899986431 1111 223445556555 24668888899999998865543
No 200
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.45 E-value=33 Score=18.52 Aligned_cols=11 Identities=27% Similarity=0.420 Sum_probs=9.5
Q ss_pred hHHHHHHHhhh
Q 008560 98 DIDSVLAKLDR 108 (561)
Q Consensus 98 d~~~i~~~l~~ 108 (561)
+.||+++|++.
T Consensus 6 qvDSV~rWmeD 16 (22)
T 3ro3_B 6 QVDSVQRWMED 16 (26)
T ss_pred hhHHHHHHHHH
Confidence 67899999985
No 201
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.51 E-value=6.9 Score=29.06 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHH-hhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 55 AAASNTLCLDHVHSVSHTLIEAASVA-QKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~l~~~~~~v-~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
..+.||||++.+.+.. .++ ..| ++.| =++-|.+|+.. ..+|| +-...+.
T Consensus 14 ~~~~C~IC~~~~~~~~-------~~~~~~C-~H~f---------c~~Ci~~~~~~-~~~CP--~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYALGE-------SVRQLPC-NHLF---------HDSCIVPWLEQ-HDSCP--VCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCTTS-------CEEECTT-SCEE---------ETTTTHHHHTT-TCSCT--TTCCCCC
T ss_pred CCCCCeeCCccccCCC-------CEEEeCC-CCee---------cHHHHHHHHHc-CCcCc--CcCCccC
Confidence 5689999999887420 001 134 5677 67789999975 58999 6666665
No 202
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.30 E-value=6e+02 Score=25.10 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcchHH
Q 008560 149 RAESRNLITRLQIGSAESKNSAMDSLLGLLQEDDKNVVIAVAQGVVPVLVKLMDSSSLEMKEKTVASIARVSMVDSSKHV 228 (561)
Q Consensus 149 ~~~v~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~e~a~~~L~~La~~~~~~~~ 228 (561)
+..+-+++..-+....+.|...+..+.+++-..+.. .=..+++.++.+-...+.++|...+..|......+ .+
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~e- 96 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IE- 96 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GG-
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HH-
Confidence 445666666555433368999999999976543322 22688999999988889999999999887765321 11
Q ss_pred HHHhchhhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008560 229 LIAEGLLLLNHLIRVLESGSGFAKERACVALQAL 262 (561)
Q Consensus 229 i~~~g~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L 262 (561)
+ -.. +++.|..+|++.++.+...+..+..++
T Consensus 97 l-~~~--~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 97 L-LLK--LIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp G-HHH--HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H-HHH--HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 133 778888888888888777777666554
No 203
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=20.98 E-value=2.7e+02 Score=28.31 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=51.5
Q ss_pred HhhhHhhhcccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhc
Q 008560 40 LNDLETQLKDFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKS 119 (561)
Q Consensus 40 ~~~l~~~l~~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~ 119 (561)
||+|.+-|. ..|+-|+..+...|++. +..-+|..| |. ...-+.--+-+..|.++|..++..
T Consensus 223 LERla~vlQ---g~~snYdtDlf~pii~~-----------i~~~~g~~Y--~~---~~~~d~s~rvIADH~R~~~f~I~D 283 (465)
T 1yfs_A 223 LERIASVLQ---GKNSNFEIDIIFPLIQF-----------GEEVSGKKY--GE---KFETDVALRVIADHLRAITFAISD 283 (465)
T ss_dssp HHHHHHHHT---TCSSGGGSTTTHHHHHH-----------HHHHHCCCT--TS---CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc---CCCccchhhhHHHHHHH-----------HHHHhCCCC--CC---CcccceeEEEEcchhhhhhhhhcc
Confidence 678888776 56777998887777875 344567888 32 012233445577899999999998
Q ss_pred cCCCCCccccccccccccc
Q 008560 120 GVLQDGDVLIKSGVLQDGV 138 (561)
Q Consensus 120 ~~l~~~~~lipN~tLr~li 138 (561)
|+++.+. --.+.||++|
T Consensus 284 Gv~PsN~--GrGYVLRRil 300 (465)
T 1yfs_A 284 GVIPSNE--GRGYVIRRIL 300 (465)
T ss_dssp TCCCCSB--HHHHHHHHHH
T ss_pred ccccCCC--CcchHHHHHH
Confidence 9887431 2234455554
No 204
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.10 E-value=6 Score=28.68 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=37.0
Q ss_pred ccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhhhHHHHHHHhhhhhcchhHHHhccCCC
Q 008560 49 DFSDFPAAASNTLCLDHVHSVSHTLIEAASVAQKCQGVSLTEGKLKTQSDIDSVLAKLDRHVRDGDVLIKSGVLQ 123 (561)
Q Consensus 49 ~~~~~p~~~~~p~~~~~~~~~~~~l~~~~~~v~~c~~~~y~~g~l~~~sd~~~i~~~l~~~~~~cp~l~t~~~l~ 123 (561)
.+......+.|||+++.+.+ ....| |+.| =..-|.+|+. ...+|| +-..++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~----------~~~~C-gH~f---------c~~Ci~~~~~-~~~~CP--~Cr~~~~ 59 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD----------LILPC-AHSF---------CQKCIDKWSD-RHRNCP--ICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS----------EEETT-TEEE---------CHHHHHHSSC-CCSSCH--HHHHCTT
T ss_pred hhhcCCCCCCCeeCCcCccC----------cccCC-CCcc---------cHHHHHHHHH-CcCcCC--CcCCccc
Confidence 33445567999999998874 13345 5667 6789999997 588999 6555554
Done!