Query 008561
Match_columns 561
No_of_seqs 320 out of 1290
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02523 galacturonosyltransfe 100.0 2E-141 4E-146 1139.3 47.5 551 4-560 5-558 (559)
2 PLN02829 Probable galacturonos 100.0 2E-122 3E-127 1000.5 38.2 458 82-561 181-639 (639)
3 PLN02910 polygalacturonate 4-a 100.0 9E-122 2E-126 993.0 37.7 461 81-560 194-656 (657)
4 PLN02742 Probable galacturonos 100.0 3E-120 6E-125 974.6 43.3 462 81-560 71-534 (534)
5 PLN02769 Probable galacturonos 100.0 3E-111 7E-116 917.9 37.0 448 82-560 179-629 (629)
6 PLN02659 Probable galacturonos 100.0 6E-110 1E-114 893.2 32.4 404 145-561 114-533 (534)
7 PLN02718 Probable galacturonos 100.0 6E-109 1E-113 896.3 37.9 437 82-561 163-603 (603)
8 PLN02870 Probable galacturonos 100.0 2E-109 4E-114 889.3 30.9 393 169-561 123-532 (533)
9 PLN02867 Probable galacturonos 100.0 8E-107 2E-111 871.8 34.8 406 155-560 114-534 (535)
10 cd06429 GT8_like_1 GT8_like_1 100.0 5.5E-57 1.2E-61 456.1 23.1 255 251-548 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 9.6E-45 2.1E-49 379.5 20.6 256 248-550 23-289 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 1.5E-42 3.3E-47 355.0 19.8 258 252-556 4-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 2.1E-40 4.5E-45 331.3 19.6 236 251-532 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 8.3E-40 1.8E-44 326.1 16.8 236 251-532 1-247 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 5.2E-38 1.1E-42 326.3 18.8 253 250-548 2-262 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 1.2E-36 2.7E-41 297.4 13.1 244 252-534 1-249 (250)
17 cd06432 GT8_HUGT1_C_like The C 100.0 1.8E-33 3.9E-38 283.5 17.3 230 252-527 2-240 (248)
18 cd06430 GT8_like_2 GT8_like_2 100.0 7E-33 1.5E-37 285.3 20.2 250 251-550 1-276 (304)
19 cd02537 GT8_Glycogenin Glycoge 99.9 6.8E-26 1.5E-30 226.7 16.9 213 259-547 11-237 (240)
20 PLN00176 galactinol synthase 99.9 9.1E-25 2E-29 228.1 19.3 238 255-549 29-293 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.8 8.1E-19 1.8E-23 179.7 8.7 141 361-535 76-242 (278)
22 KOG1879 UDP-glucose:glycoprote 99.4 2.1E-12 4.5E-17 149.5 11.2 258 247-551 1178-1447(1470)
23 COG5597 Alpha-N-acetylglucosam 98.1 8.2E-07 1.8E-11 91.5 0.5 155 365-537 155-342 (368)
24 PF03407 Nucleotid_trans: Nucl 96.0 0.023 5E-07 55.5 7.9 144 362-527 48-202 (212)
25 PLN03182 xyloglucan 6-xylosylt 90.9 1.1 2.5E-05 48.8 9.2 164 359-544 179-375 (429)
26 PF11051 Mannosyl_trans3: Mann 86.5 2.6 5.6E-05 43.5 8.0 32 371-402 83-114 (271)
27 PF05637 Glyco_transf_34: gala 83.5 0.79 1.7E-05 46.6 2.6 146 377-526 75-231 (239)
28 cd02515 Glyco_transf_6 Glycosy 72.7 43 0.00092 35.1 11.2 118 375-504 120-247 (271)
29 PF03071 GNT-I: GNT-I family; 70.7 15 0.00032 40.9 7.9 114 253-400 98-213 (434)
30 PLN03181 glycosyltransferase; 70.6 16 0.00036 40.3 8.0 35 359-394 180-214 (453)
31 KOG1950 Glycosyl transferase, 67.7 7.7 0.00017 41.8 4.9 148 376-533 122-288 (369)
32 KOG1928 Alpha-1,4-N-acetylgluc 66.9 3 6.5E-05 45.3 1.6 33 364-400 227-259 (409)
33 cd02514 GT13_GLCNAC-TI GT13_GL 64.8 36 0.00077 36.6 9.2 112 253-399 4-118 (334)
34 cd00761 Glyco_tranf_GTA_type G 45.2 1.9E+02 0.0041 24.4 9.8 43 256-300 5-47 (156)
35 PF10157 DUF2365: Uncharacteri 45.1 1.4E+02 0.003 28.6 8.6 45 148-192 96-147 (149)
36 KOG2264 Exostosin EXT1L [Signa 40.5 2.3E+02 0.0049 32.9 10.6 40 155-200 111-150 (907)
37 PF04488 Gly_transf_sug: Glyco 39.3 15 0.00033 32.0 1.1 36 360-399 61-97 (103)
38 TIGR02977 phageshock_pspA phag 38.2 2.1E+02 0.0046 28.6 9.3 57 143-199 22-80 (219)
39 KOG0994 Extracellular matrix g 34.1 4.1E+02 0.0089 33.5 11.8 22 141-162 1505-1526(1758)
40 PF04799 Fzo_mitofusin: fzo-li 31.1 2E+02 0.0044 28.2 7.5 45 149-196 118-162 (171)
41 cd07637 BAR_ACAP3 The Bin/Amph 30.5 5.6E+02 0.012 25.6 11.0 32 76-107 12-43 (200)
42 PF03314 DUF273: Protein of un 30.0 38 0.00082 34.3 2.4 24 371-394 34-57 (222)
43 PRK10132 hypothetical protein; 29.5 2.7E+02 0.0059 25.2 7.6 40 162-201 49-89 (108)
44 PRK04654 sec-independent trans 29.5 2.4E+02 0.0051 28.7 7.8 49 144-192 20-68 (214)
45 PF05478 Prominin: Prominin; 28.7 1E+03 0.022 28.6 14.4 79 143-225 221-303 (806)
46 PRK09039 hypothetical protein; 28.6 4.7E+02 0.01 28.1 10.6 9 10-18 13-21 (343)
47 PRK11166 chemotaxis regulator 28.2 6.5E+02 0.014 25.6 12.1 54 143-196 101-165 (214)
48 PF04740 LXG: LXG domain of WX 28.1 5.5E+02 0.012 24.7 13.3 75 82-172 48-124 (204)
49 PF04380 BMFP: Membrane fusoge 26.3 2.8E+02 0.0061 23.5 6.7 26 172-197 50-76 (79)
50 COG1344 FlgL Flagellin and rel 26.2 3.7E+02 0.008 28.9 9.3 86 98-203 44-130 (360)
51 cd07606 BAR_SFC_plant The Bin/ 25.4 6E+02 0.013 25.4 9.9 118 76-199 11-150 (202)
52 PRK15383 type III secretion sy 25.4 38 0.00082 35.1 1.5 23 380-402 220-242 (335)
53 PRK15382 non-LEE encoded effec 25.3 38 0.00083 35.0 1.5 39 364-402 181-234 (326)
54 PRK15384 type III secretion sy 25.2 37 0.0008 35.1 1.3 40 363-402 185-239 (336)
55 cd06423 CESA_like CESA_like is 24.9 4.5E+02 0.0098 22.6 9.3 33 261-295 10-42 (180)
56 PRK01919 tatB sec-independent 24.1 3.5E+02 0.0075 26.6 7.6 53 143-195 19-71 (169)
57 cd07603 BAR_ACAPs The Bin/Amph 23.9 5.3E+02 0.011 25.6 9.2 30 76-105 12-41 (200)
58 PF04012 PspA_IM30: PspA/IM30 23.7 4.2E+02 0.0091 26.1 8.6 72 115-198 5-78 (221)
59 PF08535 KorB: KorB domain; I 23.7 3.9E+02 0.0085 22.8 7.3 46 127-172 26-71 (93)
60 COG4585 Signal transduction hi 23.4 1.7E+02 0.0038 30.9 6.1 81 150-235 212-295 (365)
61 KOG4797 Transcriptional regula 23.1 2.9E+02 0.0062 25.3 6.3 47 174-223 63-109 (123)
62 PRK10698 phage shock protein P 22.2 5.7E+02 0.012 25.8 9.2 73 115-199 6-80 (222)
63 PF00535 Glycos_transf_2: Glyc 22.2 5.2E+02 0.011 22.3 10.5 36 258-295 8-43 (169)
64 PF06103 DUF948: Bacterial pro 22.0 3.3E+02 0.0071 23.1 6.5 45 149-193 35-80 (90)
65 PF05276 SH3BP5: SH3 domain-bi 21.8 8.9E+02 0.019 24.9 14.7 27 80-107 46-72 (239)
66 PF12329 TMF_DNA_bd: TATA elem 21.5 4.8E+02 0.01 21.8 7.1 45 156-200 7-55 (74)
67 PF05064 Nsp1_C: Nsp1-like C-t 21.5 21 0.00045 32.4 -1.1 26 102-127 23-48 (116)
68 COG0836 {ManC} Mannose-1-phosp 21.3 46 0.00099 35.7 1.2 24 435-458 186-209 (333)
69 KOG2391 Vacuolar sorting prote 21.0 4.5E+02 0.0098 28.6 8.4 31 176-206 244-274 (365)
70 cd04190 Chitin_synth_C C-termi 20.0 1.7E+02 0.0037 29.0 4.9 23 378-400 73-96 (244)
No 1
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=1.6e-141 Score=1139.31 Aligned_cols=551 Identities=82% Similarity=1.292 Sum_probs=517.0
Q ss_pred ccCCCCC---CCcccchhhhhhhhhhhhhhhhhhhhhccchhccccCCccccccCCCCCcccCCcccceeeeecCCCCcc
Q 008561 4 HRTARTG---APVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKP 80 (561)
Q Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (561)
+||+||| +++|++++ .|+++|++... +|+++.++++++ ++++++++...+..|.+|++||+|||||||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (559)
T PLN02523 5 HRGGRGGGGPGGLRSFFS--YRILASAIFLF-LFLATTSVLLNT---SPHPPHHDHLLPSSGNAYGQRTFLALKSDPLKT 78 (559)
T ss_pred hhcccCCCCCcccccchh--HHHHHHHHHHH-HHHHHHHHHHcC---CCCCcccccccccccccccccccccccCCcchh
Confidence 4666664 45787766 67777776544 445555666665 556667888888888889999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHH
Q 008561 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (561)
Q Consensus 81 ~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (561)
|+|.|+||+.||++|+.||+++||||++|.|+|+|.|.+|++|+++|++||+++.++++++.++++++++||++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (559)
T PLN02523 79 RLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERV 158 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCCC
Q 008561 161 KLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (561)
Q Consensus 161 ~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~ 240 (561)
|.|+++|++||+.|||+++++|||+|++++|||++++|+|++|++||||+|+|||||||+||||+|||++++++++.+++
T Consensus 159 k~~~~~~~~a~~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~ 238 (559)
T PLN02523 159 KVARQMIAESKESFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKP 238 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887665667
Q ss_pred CCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccccc
Q 008561 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (561)
Q Consensus 241 ~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~ 320 (561)
++++++||+++|||++||||+|++|+|+|++.|+++|++++||||||++++++|++||.++++++++|+|++|++|+|++
T Consensus 239 ~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln 318 (559)
T PLN02523 239 PPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLN 318 (559)
T ss_pred cchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 321 ~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
.+|+||++|++++.++.+||+++..+...+..++++++|+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus 319 ~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 319 SSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred cccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 99999999999999999999976655555567899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcC
Q 008561 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLG 480 (561)
Q Consensus 401 lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd 480 (561)
+||+|+++|||+||...++++.++++|++|.++.+||++.||||+|||||||++||++++|++++.|++.+.+..+||||
T Consensus 399 iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~Dqd 478 (559)
T PLN02523 399 IDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLG 478 (559)
T ss_pred CcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhcccccccccc
Confidence 99999999999999766788888999999999989999999999999999999999999999999898887788999999
Q ss_pred CCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhccCC
Q 008561 481 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFG 560 (561)
Q Consensus 481 ~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn~~ 560 (561)
+|||+|++|+|+|++||++||++++||++.++.+.+++|+||||+|++|||++.++++|+++|++|++++++||++|||+
T Consensus 479 aLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn~~ 558 (559)
T PLN02523 479 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACNFG 558 (559)
T ss_pred ccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999997
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=1.6e-122 Score=1000.51 Aligned_cols=458 Identities=51% Similarity=0.932 Sum_probs=427.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHH
Q 008561 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (561)
Q Consensus 82 ~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (561)
.|+++|+++||+++||||+.||+.-+ +...+| +|.++++|. +++|++. +.| .+|+++++++|+
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~--~~~l~~---el~~~i~e~------~r~l~~a--~~d----~~lp~~~~~~~~ 243 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKA--NPHFTR---ELRLRIKEV------QRVLGDA--SKD----SDLPKNANEKLK 243 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhhc--cCC----CCCChhHHHHHH
Confidence 89999999999999999998887643 234444 777777776 6777777 335 345678999999
Q ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCCC
Q 008561 162 LTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (561)
Q Consensus 162 ~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~ 240 (561)
+|+++|++||++ |||+++++|||+|++++|||+++||+|++|++||||+|+|||||||+||||+|||++++++++ .+
T Consensus 244 ~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~--~p 321 (639)
T PLN02829 244 AMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQ--FP 321 (639)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhcc--CC
Confidence 999999999996 999999999999999999999999999999999999999999999999999999999988775 56
Q ss_pred CCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccccc
Q 008561 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (561)
Q Consensus 241 ~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~ 320 (561)
++++++||+++|||+|||||+|++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+|++
T Consensus 322 ~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln 401 (639)
T PLN02829 322 NQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLN 401 (639)
T ss_pred ChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 321 ~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
.+|+||++|+++..++.|||+++..+ ..+++++++|+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus 402 ~~~~pvl~ql~~~~~~~~yf~~~~~~---~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 402 SSYSPVLKQLGSQSMIDYYFRAHRAN---SDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred ccccHHHHHhhhhhhhhhhhhccccC---cccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 99999999999999999999874432 235889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcC
Q 008561 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLG 480 (561)
Q Consensus 401 lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd 480 (561)
+||+|+++|||+||...++++..+++|++|.+..+|+++.||||+|||||||++||++++|+++++|++.+.+..+||||
T Consensus 479 iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlg 558 (639)
T PLN02829 479 IDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLG 558 (639)
T ss_pred CCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCcccccc
Confidence 99999999999999887888999999999998889999999999999999999999999999999999888888899999
Q ss_pred CCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhccCC
Q 008561 481 TLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACNFG 560 (561)
Q Consensus 481 ~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn~~ 560 (561)
+|||+|++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||++.++++|+++|.+|++++++||++|||+
T Consensus 559 aLPp~Ll~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~ 638 (639)
T PLN02829 559 TLPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNIN 638 (639)
T ss_pred CCChHHHHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999997
Q ss_pred C
Q 008561 561 A 561 (561)
Q Consensus 561 ~ 561 (561)
.
T Consensus 639 p 639 (639)
T PLN02829 639 P 639 (639)
T ss_pred C
Confidence 3
No 3
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=9.3e-122 Score=993.03 Aligned_cols=461 Identities=51% Similarity=0.919 Sum_probs=430.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHH
Q 008561 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (561)
Q Consensus 81 ~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (561)
-.|+++|+++||+++||||..||+.-+ +...+| +|+++++|. +++|++. +.| .+|++.+.++|
T Consensus 194 ~~d~~vk~lkDQl~~AkaY~~iak~~~--~~~l~~---eL~~~i~e~------~r~ls~a--~~d----~dlp~~~~~k~ 256 (657)
T PLN02910 194 NSDSILKLMRDQIIMAKAYANIAKSNN--VTNLYV---SLMKQFREN------KRAIGEA--TSD----AELHSSALDQA 256 (657)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhhc--ccc----cccCchHHHHH
Confidence 369999999999999999988887644 234444 777777776 6777776 444 56788899999
Q ss_pred HHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCC
Q 008561 161 KLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGK 239 (561)
Q Consensus 161 ~~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~ 239 (561)
++|+++|++||+ .|||+++++|||+||+++||++++||+|++|++||||+|+|||||||+||||+|||++++++++ .
T Consensus 257 ~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~--~ 334 (657)
T PLN02910 257 KAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKD--Y 334 (657)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhcc--C
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999988776 5
Q ss_pred CCCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccc
Q 008561 240 PTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFL 319 (561)
Q Consensus 240 ~~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l 319 (561)
+++++++||+++|||+|||||+|++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+|+
T Consensus 335 p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wl 414 (657)
T PLN02910 335 VNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWL 414 (657)
T ss_pred CChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHhhhhhhhhhhhhhcc-cccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhh
Q 008561 320 NSSYVPVLRQLESANLQRFYFENK-LENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (561)
Q Consensus 320 ~~~~~Pvl~~le~~~~~~~~F~~~-~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseL 398 (561)
+.+|+||++|+++..++.|||+.. ......+..++++++|+|+|+++|+|||||++||+++||||||+||||++||++|
T Consensus 415 n~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseL 494 (657)
T PLN02910 415 NSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 494 (657)
T ss_pred cccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHH
Confidence 999999999999999999999853 2222233468999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCC
Q 008561 399 WKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWK 478 (561)
Q Consensus 399 w~lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~D 478 (561)
|++||+|+++|||+||...++++..+++|++|.++++|+++.||||+|||||||++||++++|+.++.|++.+.+..+||
T Consensus 495 w~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~d 574 (657)
T PLN02910 495 WSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWK 574 (657)
T ss_pred HhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccc
Confidence 99999999999999999888899999999999998999999999999999999999999999999999999888899999
Q ss_pred cCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhcc
Q 008561 479 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACN 558 (561)
Q Consensus 479 Qd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn 558 (561)
||+|||+|++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||++.++++|+++|.+|++++++||++||
T Consensus 575 qgsLPpgLLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cn 654 (657)
T PLN02910 575 LGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCN 654 (657)
T ss_pred cCCCChHHHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCC
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred CC
Q 008561 559 FG 560 (561)
Q Consensus 559 ~~ 560 (561)
|+
T Consensus 655 i~ 656 (657)
T PLN02910 655 IS 656 (657)
T ss_pred CC
Confidence 97
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=2.6e-120 Score=974.64 Aligned_cols=462 Identities=48% Similarity=0.899 Sum_probs=424.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHH
Q 008561 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (561)
Q Consensus 81 ~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (561)
-.|+++||++||+++||||+.||+.-+ +...+| +|+++++|. +++|++. +.|.+.+ .+++++++|
T Consensus 71 ~~~~~~~~l~dql~~Ak~y~~ia~~~~--~~~l~~---el~~~i~e~------~~~l~~a--~~d~~~~--~~~~~~~~~ 135 (534)
T PLN02742 71 SATSFSRQLADQITLAKAYVVIAKEHN--NLQLAW---ELSAQIRNC------QLLLSKA--ATRGEPI--TVEEAEPII 135 (534)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHHHh--hcccccC--CchhHHHHH
Confidence 569999999999999999999888733 233333 555555555 5555555 2322111 036788999
Q ss_pred HHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCC-CC
Q 008561 161 KLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYND-EG 238 (561)
Q Consensus 161 ~~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~-~~ 238 (561)
++|+++|++||+ .|||+++++|||+|++++|||+++||+|++|++||||+|+|||||||+||||+|||+++++++. ++
T Consensus 136 ~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~ 215 (534)
T PLN02742 136 RDLAALIYQAQDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEE 215 (534)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhcccc
Confidence 999999999999 6999999999999999999999999999999999999999999999999999999999988754 45
Q ss_pred CCCCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccc
Q 008561 239 KPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKF 318 (561)
Q Consensus 239 ~~~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~ 318 (561)
++++++++||+++|||+|||||+|++|||||++.|+++|+++|||||||+.++.+|+.||.+|++++++|+|+++++|+|
T Consensus 216 ~~~~~~l~d~~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~w 295 (534)
T PLN02742 216 KRNSPRLVDNNLYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSW 295 (534)
T ss_pred ccccccccCCCcceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhh
Q 008561 319 LNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (561)
Q Consensus 319 l~~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseL 398 (561)
++.+|+||++|++++.++.+||++...+ ..++.++++|+|+|+++|+||+||++||+++||||||+|+||++||++|
T Consensus 296 l~~~~~pvl~ql~~~~~~~~yf~~~~~~---~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL 372 (534)
T PLN02742 296 LNASYVPVLKQLQDSDTQSYYFSGSQDD---GKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPL 372 (534)
T ss_pred cccccchHHHHhhhhhhhhhhccccccc---ccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHH
Confidence 9999999999999999999999976422 2356788999999999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCC
Q 008561 399 WKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWK 478 (561)
Q Consensus 399 w~lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~D 478 (561)
|++||+|+++|||+||...+++|..++||++|.++.+|+++.||||+|||||||++||++++|+.++.|++.+.+..+||
T Consensus 373 ~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d 452 (534)
T PLN02742 373 FSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWK 452 (534)
T ss_pred hcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhcccccccc
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999888889999
Q ss_pred cCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhcc
Q 008561 479 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACN 558 (561)
Q Consensus 479 Qd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn 558 (561)
||+|||+|++|+|++++||++||+.++||++.++.+.+++|+||||+|++|||.+.++++|+++|++|++++++||++||
T Consensus 453 ~gaLpp~LLaF~g~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cn 532 (534)
T PLN02742 453 LGTLPPGLLTFYGLTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCN 532 (534)
T ss_pred ccccchHHHHHcCcceecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCC
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred CC
Q 008561 559 FG 560 (561)
Q Consensus 559 ~~ 560 (561)
||
T Consensus 533 i~ 534 (534)
T PLN02742 533 FH 534 (534)
T ss_pred CC
Confidence 96
No 5
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=3e-111 Score=917.90 Aligned_cols=448 Identities=35% Similarity=0.589 Sum_probs=402.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHH
Q 008561 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (561)
Q Consensus 82 ~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (561)
.|+++||++||+++||||++..++++- +.+.+| +|+++++|. +++|++. +.| .+|++.+.++++
T Consensus 179 ~d~~~~~l~Dql~~Ak~y~~~iak~~~-~~~l~~---el~~~i~e~------~~~l~~~--~~d----~dlp~~~~~~~~ 242 (629)
T PLN02769 179 KDSIVKRLKDQLFVARAYYPSIAKLPG-QEKLTR---ELKQNIQEH------ERVLSES--ITD----ADLPPFIQKKLE 242 (629)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCC-cHHHHH---HHHHHHHHH------HHHHhhc--ccc----ccCChhHHHHHH
Confidence 799999999999999999855555442 334444 888888887 7888887 445 456777888999
Q ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCCC
Q 008561 162 LTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (561)
Q Consensus 162 ~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~ 240 (561)
+|+++|++||++ |||.++++|||+|++++|||+++++||++|++||||+|+|||||||+||||+|||++++++++ .+
T Consensus 243 ~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~--~~ 320 (629)
T PLN02769 243 KMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDME--DS 320 (629)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhcc--CC
Confidence 999999999995 999999999999999999999999999999999999999999999999999999999988876 56
Q ss_pred CCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccccc
Q 008561 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (561)
Q Consensus 241 ~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~ 320 (561)
++++++||+++|||+|||||+|++|||||++.|+++|+++|||||||++++.+|++||.+|++++|+|||+++|+|+|.+
T Consensus 321 ~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~ 400 (629)
T PLN02769 321 NSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKD 400 (629)
T ss_pred chhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeecc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred ccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 321 ~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
. .+|+++|++......++|.+.. ....++++|+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus 401 ~-~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 401 L-DKFALKQLSLPEEFRVSFRSVD------NPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred c-chHHHHhhccchhhhhhhccCC------CCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 4 5899999988776666666432 12345678999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHc-C-CCCCCC
Q 008561 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN-E-NRTLWK 478 (561)
Q Consensus 401 lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~-~-~~~l~D 478 (561)
+||+|+++|||+||...+.++..+++ ..+|+++.||||+|||||||++||++++++++++|++.+ . +...|+
T Consensus 474 iDL~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~ 547 (629)
T PLN02769 474 LDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLR 547 (629)
T ss_pred CCCCCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhccccccc
Confidence 99999999999999754444444332 346889999999999999999999999999999998664 3 457899
Q ss_pred cCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhcc
Q 008561 479 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQACN 558 (561)
Q Consensus 479 Qd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn 558 (561)
+++||+++++|+|++++||++||++++||++.++.+.+++|+||||+|++|||++.++++|+++||+|++++++||++||
T Consensus 548 ~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cn 627 (629)
T PLN02769 548 AAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECN 627 (629)
T ss_pred ccCcCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCC
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred CC
Q 008561 559 FG 560 (561)
Q Consensus 559 ~~ 560 (561)
|+
T Consensus 628 i~ 629 (629)
T PLN02769 628 VN 629 (629)
T ss_pred CC
Confidence 96
No 6
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=5.8e-110 Score=893.22 Aligned_cols=404 Identities=44% Similarity=0.793 Sum_probs=373.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhh
Q 008561 145 DESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLM 224 (561)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~ 224 (561)
-|+++++|+.+|+.. +|||.++++|||+|++++||+++++|+|+.++.||||+|+|||+|||+||||
T Consensus 114 ~~~~~~~~~~~~~~~-------------~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt 180 (534)
T PLN02659 114 IPQTLEEFMDEVKNS-------------RSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLA 180 (534)
T ss_pred cchHHHHHHHHHHhc-------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhH
Confidence 467888888877764 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCCC-CCCCCCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccC
Q 008561 225 EERIAHPEKYND-EGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDY 303 (561)
Q Consensus 225 ~e~~~~~~~~~~-~~~~~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~ 303 (561)
+|||++++++++ +++++.|+++||+++|||++||||+|++|||||++.|+++|+++|||||||++|+.+|++||.+|++
T Consensus 181 ~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~ 260 (534)
T PLN02659 181 NEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPL 260 (534)
T ss_pred HHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCC
Confidence 999999988877 4456678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecccccccccchhHHHhhhhhhhhhhhhhccc--------ccccccccccccCCCCCcchhhhHHHhhhhh
Q 008561 304 NGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKL--------ENATKDTTNMKFRNPKYLSILNHLRFYLPEM 375 (561)
Q Consensus 304 ~~a~I~V~~i~df~~l~~~~~Pvl~~le~~~~~~~~F~~~~--------~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeL 375 (561)
++|+|||+++|+|+||+++|+||++|++++....+||+... .+++..+.++++++|+|+|+++|+||+||++
T Consensus 261 ~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeL 340 (534)
T PLN02659 261 SPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPEL 340 (534)
T ss_pred ccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888997321 1222334578889999999999999999999
Q ss_pred cccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccC--c---cchhcccCCCchhhhccCCCCCCccccceEEE
Q 008561 376 YPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGS--F---HRYAQYMNFSHPLIKAKFNPKACAWAYGMNFF 450 (561)
Q Consensus 376 lP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~--~---~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLi 450 (561)
||+++||||||+||||++||++||++||+|+++|||+||... + +++..+++|++|.+..+|+++.||||+|||||
T Consensus 341 LP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLI 420 (534)
T PLN02659 341 FPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIF 420 (534)
T ss_pred hhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEe
Confidence 999999999999999999999999999999999999999642 2 56777889999999889999999999999999
Q ss_pred ecHHHHHhhHHHHHHHHHHHc--CCCCCCCcCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCC
Q 008561 451 DLDAWRREKCTEEYHYWQNLN--ENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNM 528 (561)
Q Consensus 451 NL~kWR~~nitek~~~~l~~~--~~~~l~DQd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~ 528 (561)
||++||++++++++++|++.+ .+..+||||+|||++++|+|++++||++||++++||+.....+.+++|+||||+|++
T Consensus 421 NLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~ 500 (534)
T PLN02659 421 DLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRA 500 (534)
T ss_pred eHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCCC
Confidence 999999999999999999776 456889999999999999999999999999999999877666778999999999999
Q ss_pred CCccccccCCCHHHHHHHhcCChhhHhhccCCC
Q 008561 529 KPWLDIAMNQFKPLWTKYVDYDLDFIQACNFGA 561 (561)
Q Consensus 529 KPW~~~~~~~y~~lW~kY~~~~~~~l~~cn~~~ 561 (561)
|||+++++++|+++|.+|++++++||++|||++
T Consensus 501 KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~~ 533 (534)
T PLN02659 501 KPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIRA 533 (534)
T ss_pred CccccccCCcchhHHHHHhccCCHHHHhcCCCC
Confidence 999999999999999999999999999999973
No 7
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=6.4e-109 Score=896.35 Aligned_cols=437 Identities=43% Similarity=0.768 Sum_probs=402.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHH
Q 008561 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (561)
Q Consensus 82 ~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (561)
.|+++||++||+++||||+.+|+.-+ +...+| +|.++++++ +++|++. +.|.+ +++++.++++
T Consensus 163 ~d~~v~~~~dql~~ak~y~~~a~~~~--~~~~~~---el~~~i~e~------~~~l~~~--~~d~~----lp~~~~~~~~ 225 (603)
T PLN02718 163 TDEKVKEIRDKIIQAKAYLNLAPPGS--NSQLVK---ELRLRTKEL------ERAVGDA--TKDKD----LSKSALQRMK 225 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhcc--cCCCC----CCHhHHHHHH
Confidence 79999999999999999998887643 344445 777777777 7777777 55533 5677888999
Q ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCCCCCC
Q 008561 162 LTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (561)
Q Consensus 162 ~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~ 240 (561)
+|++++++||+ .|||.++++|||+|++++||++++||+|++|++||||+|+|||+|||+||||+|||++++++++ .+
T Consensus 226 ~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~--~~ 303 (603)
T PLN02718 226 SMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQ--LP 303 (603)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhcc--CC
Confidence 99999999999 5999999999999999999999999999999999999999999999999999999999987776 56
Q ss_pred CCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEeccccccc
Q 008561 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (561)
Q Consensus 241 ~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~ 320 (561)
++++++||+++|||+++||+++++|+|+|++.|+.+|++++||||||++++++|+.||.+++.++++|+|+++++|.|++
T Consensus 304 ~~~~l~d~~~~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp 383 (603)
T PLN02718 304 NQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLP 383 (603)
T ss_pred ChhhccCCcceeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhcccc
Confidence 78899999999999999999999999999999998889999999999999999999999999889999999999999999
Q ss_pred ccchhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 321 ~~~~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
.+|++++++++. .+|+|+|+++|+||+||++||+++||||||+||||++||++||+
T Consensus 384 ~~~~~~lk~l~s------------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 384 ADYNSLLMKQNS------------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred ccchhhhhhccc------------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 888888765432 34689999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEecCcc---CccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCC
Q 008561 401 IDMDGKVNGAVETCFG---SFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 477 (561)
Q Consensus 401 lDL~gkviaAV~d~~~---~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~ 477 (561)
+||+|+++|||+||.. .++++..+++|++|.+.++|+++.||||+|||||||++||++++++++++|++.+.+..+|
T Consensus 440 iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~ 519 (603)
T PLN02718 440 LDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLW 519 (603)
T ss_pred CCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCcccc
Confidence 9999999999999975 3456667889999988889999999999999999999999999999999999888777899
Q ss_pred CcCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhHhhc
Q 008561 478 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFIQAC 557 (561)
Q Consensus 478 DQd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l~~c 557 (561)
|||+|||++++|+|++++||++||++++||++.++.+.+++|+||||+|++|||++.+++.|+++|.+|++++++||++|
T Consensus 520 dqdaLpp~LlvF~gri~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~C 599 (603)
T PLN02718 520 KAGSLPIGWLTFYNQTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQC 599 (603)
T ss_pred CcccccHHHHHhcCceeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhc
Confidence 99999999999999999999999999999988777778999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008561 558 NFGA 561 (561)
Q Consensus 558 n~~~ 561 (561)
||+.
T Consensus 600 n~~~ 603 (603)
T PLN02718 600 NIHE 603 (603)
T ss_pred CCCC
Confidence 9974
No 8
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=1.8e-109 Score=889.30 Aligned_cols=393 Identities=44% Similarity=0.840 Sum_probs=363.1
Q ss_pred HHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCcccCCC-CCCCCCCCCC
Q 008561 169 EAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYND-EGKPTPAEFE 246 (561)
Q Consensus 169 ~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~-~~~~~~~~l~ 246 (561)
+||+ .|||.++++|||+|++++|||++++|+|++|++||||+|+|||||||+||||+|||++++++++ +++++.|+++
T Consensus 123 ~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~ 202 (533)
T PLN02870 123 DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLS 202 (533)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCccccccccc
Confidence 4454 7999999999999999999999999999999999999999999999999999999999988777 3456678999
Q ss_pred CCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhH
Q 008561 247 DPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPV 326 (561)
Q Consensus 247 d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pv 326 (561)
||+++|||++||||+|++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+||+++|+||
T Consensus 203 dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pv 282 (533)
T PLN02870 203 DNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPV 282 (533)
T ss_pred CCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhc-cccc-------ccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhh
Q 008561 327 LRQLESANLQRFYFEN-KLEN-------ATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (561)
Q Consensus 327 l~~le~~~~~~~~F~~-~~~~-------~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseL 398 (561)
++|+|++.++++||.+ .... +....+++++++|+|+|+++|+||+||++||+++||||||+||||++||++|
T Consensus 283 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseL 362 (533)
T PLN02870 283 LEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPL 362 (533)
T ss_pred HHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHH
Confidence 9999999886666653 2211 1112357899999999999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEEecCccC-----ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHc--
Q 008561 399 WKIDMDGKVNGAVETCFGS-----FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN-- 471 (561)
Q Consensus 399 w~lDL~gkviaAV~d~~~~-----~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~-- 471 (561)
|++||+|+++|||+||... .+++..|+||++|.+..+|+++.||||+|||||||++||++++++++++|++.+
T Consensus 363 w~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~ 442 (533)
T PLN02870 363 WDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLK 442 (533)
T ss_pred hhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhh
Confidence 9999999999999999642 356778999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCcCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCCh
Q 008561 472 ENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDL 551 (561)
Q Consensus 472 ~~~~l~DQd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~ 551 (561)
.+..+||||+|||++++|+|++++||++||++++||++....+.+++|+||||+|++|||++.+.++|+.+|.+|+++++
T Consensus 443 ~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~ 522 (533)
T PLN02870 443 SNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSN 522 (533)
T ss_pred cCceecccccccHhHHHhcCceEECChHHhcCCCCCcccccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCc
Confidence 34688999999999999999999999999999999987766778899999999999999999999999999999999999
Q ss_pred hhHhhccCCC
Q 008561 552 DFIQACNFGA 561 (561)
Q Consensus 552 ~~l~~cn~~~ 561 (561)
+||++|||+.
T Consensus 523 ~fl~~Cni~~ 532 (533)
T PLN02870 523 DFIRNCHILE 532 (533)
T ss_pred hHhhhcCCCC
Confidence 9999999973
No 9
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=8.3e-107 Score=871.82 Aligned_cols=406 Identities=38% Similarity=0.718 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhhhHHHhcCccc
Q 008561 155 EVKERIKLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEK 233 (561)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~ 233 (561)
.++++.+.|++++.++|. +|||.++++|||+|++++||+++++|+|++|++||||+|+|||||||+||||+|||+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~ 193 (535)
T PLN02867 114 GTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSLHCLCLKLAEEYAVNAMA 193 (535)
T ss_pred chhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchh
Confidence 355677788888888887 7999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-CCCCCCCCCCCCceeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEE
Q 008561 234 YND-EGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKA 312 (561)
Q Consensus 234 ~~~-~~~~~~~~l~d~~~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~ 312 (561)
+++ ++++..|+++||+++|||++||||+|++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||++
T Consensus 194 ~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM~~WF~~n~~~~a~v~V~~ 273 (535)
T PLN02867 194 RSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEVKG 273 (535)
T ss_pred hccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEe
Confidence 777 3445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhHHHhhhhhhhh-hhhhhccccc----ccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeec
Q 008561 313 VEDYKFLNSSYVPVLRQLESANLQ-RFYFENKLEN----ATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDD 387 (561)
Q Consensus 313 i~df~~l~~~~~Pvl~~le~~~~~-~~~F~~~~~~----~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~ 387 (561)
+|+|+|++.+|+||++++|++.+. .+||++.... .....+++++++|+|+|+++|+||+||++||+++||||||+
T Consensus 274 ~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlRflIPeLLP~LdKVLYLD~ 353 (535)
T PLN02867 274 LHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFPDLNKIVFLDD 353 (535)
T ss_pred ehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHHHHHHHHhhccCeEEEecC
Confidence 999999999999999999988765 2333332110 01123478889999999999999999999999999999999
Q ss_pred CeeEecCchhhhccCCCCCEEEEEecCcc--C---ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHH
Q 008561 388 DIVVQRDLTGLWKIDMDGKVNGAVETCFG--S---FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTE 462 (561)
Q Consensus 388 DvIV~~DLseLw~lDL~gkviaAV~d~~~--~---~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nite 462 (561)
||||++||++||++||+|+++|||.|..+ . .+++..++||++|.+..+|+++.||||+|||||||++||++++++
T Consensus 354 DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYFNSGVmLINL~~WRe~nITe 433 (535)
T PLN02867 354 DVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKAWRRTNITE 433 (535)
T ss_pred CEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcceecceeeeeHHHHHHhcHHH
Confidence 99999999999999999999999987432 1 245677999999998889999999999999999999999999999
Q ss_pred HHHHHHHHcCC--CCCCCcCCCChhhhccCCceeecCCccccccCCCCCCC-ChhhcCCcEEEEccCCCCCccccccCCC
Q 008561 463 EYHYWQNLNEN--RTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSI-SMEEIQNAAVVHFNGNMKPWLDIAMNQF 539 (561)
Q Consensus 463 k~~~~l~~~~~--~~l~DQd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i-~~e~i~~~~IIHy~G~~KPW~~~~~~~y 539 (561)
++++|++.+.+ ..+||||+||++|++|+|+|++||++||+.++||+... ..+.+++|+||||+|++|||+++++++|
T Consensus 434 k~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~paIIHYnG~~KPW~e~~~~~y 513 (535)
T PLN02867 434 AYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESAAVLHFSGPAKPWLEIGFPEV 513 (535)
T ss_pred HHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCcEEEEECCCCCcccccCCCch
Confidence 99999987643 57899999999999999999999999999999987543 3355789999999999999999999999
Q ss_pred HHHHHHHhcCChhhHhhccCC
Q 008561 540 KPLWTKYVDYDLDFIQACNFG 560 (561)
Q Consensus 540 ~~lW~kY~~~~~~~l~~cn~~ 560 (561)
+++|.+|++++++|+|+|||.
T Consensus 514 R~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 514 RSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred hHHHHHhcCccchHHHhcccC
Confidence 999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=5.5e-57 Score=456.12 Aligned_cols=255 Identities=55% Similarity=0.970 Sum_probs=227.3
Q ss_pred eEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhh
Q 008561 251 YHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (561)
Q Consensus 251 iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~l 330 (561)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++.+.|++|+.+++.++++|+|+.++++.+.+....++++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999888776667777877
Q ss_pred hhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEE
Q 008561 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGA 410 (561)
Q Consensus 331 e~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaA 410 (561)
++.. ...++++++++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++||
T Consensus 81 ~~~~---------------~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aa 145 (257)
T cd06429 81 ESEA---------------DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGA 145 (257)
T ss_pred hccc---------------cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEE
Confidence 6542 1245677889999999999999999999999999999999999999999999999999999
Q ss_pred EecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC--CCCCCcCCCChhhhc
Q 008561 411 VETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN--RTLWKLGTLPPGLIT 488 (561)
Q Consensus 411 V~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~--~~l~DQd~LN~~li~ 488 (561)
|+| |||||||||||++||++++++++.+|++.+.+ ..++||+.+++++++
T Consensus 146 v~d----------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~ 197 (257)
T cd06429 146 VET----------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIV 197 (257)
T ss_pred Ehh----------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHH
Confidence 987 57899999999999999999999999976643 255665555555589
Q ss_pred cCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhc
Q 008561 489 FYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVD 548 (561)
Q Consensus 489 f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~ 548 (561)
|+|+++.||++||++++|++.....+.+++|+||||+|+.|||+..+.++|+++||+|++
T Consensus 198 ~~~~~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 198 FYGLTSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred ccCeeEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 999999999999999888876544456789999999999999999998999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.6e-45 Score=379.48 Aligned_cols=256 Identities=19% Similarity=0.260 Sum_probs=197.5
Q ss_pred CceeEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchh
Q 008561 248 PKLYHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVP 325 (561)
Q Consensus 248 ~~~iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~P 325 (561)
+..+|||+++|+ + .+++|+|+|++.|+++ ..++|||++++++.+.++.+..+....+..|+++.++. +++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~~------ 94 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ERL------ 94 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HHH------
Confidence 467999999995 5 5899999999999876 57999999999999999988777666677787776642 111
Q ss_pred HHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhccCCC
Q 008561 326 VLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKIDMD 404 (561)
Q Consensus 326 vl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~lDL~ 404 (561)
.+ ++...++|.++|+||+||++|| +++||||||+|+||++||++||++|++
T Consensus 95 ---------------~~-------------~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~ 146 (334)
T PRK15171 95 ---------------KS-------------LPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFA 146 (334)
T ss_pred ---------------hC-------------CcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCC
Confidence 00 1123468999999999999999 599999999999999999999999999
Q ss_pred CCEEEEE-ecCccCc-cchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHc---CCCCCCCc
Q 008561 405 GKVNGAV-ETCFGSF-HRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN---ENRTLWKL 479 (561)
Q Consensus 405 gkviaAV-~d~~~~~-~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~---~~~~l~DQ 479 (561)
|..+||| .|+...+ ......++. | .+ ..+|||||||||||++||++++++++.++++.+ ....+.||
T Consensus 147 ~~~~aav~~d~~~~~~~~~~~~l~~--~----~~--~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQ 218 (334)
T PRK15171 147 ENEIAAVVAEGDAEWWSKRAQSLQT--P----GL--ASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQ 218 (334)
T ss_pred CCeEEEEEeccchhHHHHHHHhcCC--c----cc--cccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecCh
Confidence 6666665 4543211 111112221 1 11 246999999999999999999999999998653 23456799
Q ss_pred CCCChhhhccCCceeecCCccccccC-CCCC--CCChhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCC
Q 008561 480 GTLPPGLITFYSTTKPLDKSWHVLGL-GYNP--SISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYD 550 (561)
Q Consensus 480 d~LN~~li~f~g~i~~Ld~~WN~~~l-gy~~--~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~ 550 (561)
|+|| ++|.|+|+.||.+||++.. .+.. .......++|+||||+|+.|||...+.++++++||+|...+
T Consensus 219 DiLN---~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~s 289 (334)
T PRK15171 219 DVLN---ILLAGKVKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEAS 289 (334)
T ss_pred hHHH---HHHcCCeEECCHhhCCccchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcC
Confidence 9999 6999999999999998742 1110 01111235899999999999999988899999999998864
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.5e-42 Score=354.98 Aligned_cols=258 Identities=20% Similarity=0.316 Sum_probs=193.6
Q ss_pred EEEEEcCCc-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhh
Q 008561 252 HYAIFSDNV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (561)
Q Consensus 252 HIai~sDNv-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~l 330 (561)
-||++.+|+ .+++|+|+|++.|+. ..++|||++|+++.+.++.+.......+++|.++.++++.-
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~------------ 69 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKS------------ 69 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhh------------
Confidence 466777785 679999999999985 45999999999999999999877666688888887753110
Q ss_pred hhhhhhhhhhhcccccccccccccccCCCCCcc-hhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhcc--CCCC-
Q 008561 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLS-ILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKI--DMDG- 405 (561)
Q Consensus 331 e~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S-~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~l--DL~g- 405 (561)
.+. ..++ .++| ..+|+||+||++|| +++||||||+|+||++||++||++ |+.|
T Consensus 70 --------~~~-------------~~~~-~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~ 127 (280)
T cd06431 70 --------RVS-------------WIPN-KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQ 127 (280)
T ss_pred --------hhc-------------cCcc-cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCC
Confidence 000 0011 2344 44889999999999 599999999999999999999998 7765
Q ss_pred CEEEEEecCccCccchhccc-CCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHc----CCCCCCCcC
Q 008561 406 KVNGAVETCFGSFHRYAQYM-NFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN----ENRTLWKLG 480 (561)
Q Consensus 406 kviaAV~d~~~~~~~~~~~l-nfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~----~~~~l~DQd 480 (561)
+++|||++...- |.... ....| +.....|||||||||||++||++++++++..+.++. .+..+.|||
T Consensus 128 ~~~a~v~~~~~~---~~~~~~~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQD 199 (280)
T cd06431 128 QVLGLVENQSDW---YLGNLWKNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQD 199 (280)
T ss_pred cEEEEeccchhh---hhhhhhhccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHH
Confidence 577777765321 11110 00000 111235999999999999999999999987665432 345678999
Q ss_pred CCChhhhccCCc---eeecCCccccccCCCC-CCCChhhcCCcEEEEccCCCCCcccccc-CCCHHHHHHHhcCChhhHh
Q 008561 481 TLPPGLITFYST---TKPLDKSWHVLGLGYN-PSISMEEIQNAAVVHFNGNMKPWLDIAM-NQFKPLWTKYVDYDLDFIQ 555 (561)
Q Consensus 481 ~LN~~li~f~g~---i~~Ld~~WN~~~lgy~-~~i~~e~i~~~~IIHy~G~~KPW~~~~~-~~y~~lW~kY~~~~~~~l~ 555 (561)
+|| ++|.++ ++.||.+||++..... ......+.++|+||||+|+.|||...+. ++|+++|.+|.+++.+.|+
T Consensus 200 iLN---~v~~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (280)
T cd06431 200 IFN---AVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLR 276 (280)
T ss_pred HHH---HHHcCCcceeEECCCccccccCccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhh
Confidence 999 589999 8999999999853211 0000122468999999999999998775 8999999999999999887
Q ss_pred h
Q 008561 556 A 556 (561)
Q Consensus 556 ~ 556 (561)
+
T Consensus 277 ~ 277 (280)
T cd06431 277 R 277 (280)
T ss_pred h
Confidence 5
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=2.1e-40 Score=331.29 Aligned_cols=236 Identities=21% Similarity=0.267 Sum_probs=181.8
Q ss_pred eEEEEE-cC-Cc-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHH
Q 008561 251 YHYAIF-SD-NV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (561)
Q Consensus 251 iHIai~-sD-Nv-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl 327 (561)
|||++. +| |+ .+++|+++|+++|++. .++|||++++++.+..+.+..+....+..++++.++.-.+..
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~------- 71 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD------- 71 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-------
Confidence 467665 55 45 5899999999999986 699999999999999888887766567778777663211100
Q ss_pred HhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCE
Q 008561 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKV 407 (561)
Q Consensus 328 ~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkv 407 (561)
+ . ...++++..+|+||++|+++|+++||||||+|+||++||++||++|++|++
T Consensus 72 ------------~--------------~-~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~ 124 (246)
T cd00505 72 ------------S--------------E-HLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQE 124 (246)
T ss_pred ------------h--------------h-hhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCe
Confidence 0 0 002567889999999999999999999999999999999999999999999
Q ss_pred EEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHH-cCCCCCCCcCCCChhh
Q 008561 408 NGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNL-NENRTLWKLGTLPPGL 486 (561)
Q Consensus 408 iaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~-~~~~~l~DQd~LN~~l 486 (561)
+|||+||..... ...... ..+...+.+|||||||||||++||++++.+++.++... .......|||+||
T Consensus 125 ~aav~d~~~~~~--~~~~~~-----~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--- 194 (246)
T cd00505 125 LAAAPDPGDRRE--GKYYRQ-----KRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLN--- 194 (246)
T ss_pred EEEccCchhhhc--cchhhc-----ccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHH---
Confidence 999999864211 000000 11223456899999999999999988888877765433 3445678999999
Q ss_pred hccCCc---eeecCCccccccCCCCCC--CChhhcCCcEEEEccCCCCCcc
Q 008561 487 ITFYST---TKPLDKSWHVLGLGYNPS--ISMEEIQNAAVVHFNGNMKPWL 532 (561)
Q Consensus 487 i~f~g~---i~~Ld~~WN~~~lgy~~~--i~~e~i~~~~IIHy~G~~KPW~ 532 (561)
.+|.++ ++.||.+||++..++... ...+..++|+||||+|+.|||.
T Consensus 195 ~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 195 TFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred HHHhcCCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 588998 999999999997654332 1234578999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=8.3e-40 Score=326.13 Aligned_cols=236 Identities=19% Similarity=0.278 Sum_probs=187.5
Q ss_pred eEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHH
Q 008561 251 YHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLR 328 (561)
Q Consensus 251 iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~ 328 (561)
+|||+++|. + .+++|++.|+++|+++ +.++|||++++++.+.++.+.......+..|+++.++.-.
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~----------- 68 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDD----------- 68 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHH-----------
Confidence 689999995 5 5799999999999986 5799999999999988888777655456777776653200
Q ss_pred hhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEE
Q 008561 329 QLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVN 408 (561)
Q Consensus 329 ~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkvi 408 (561)
+.. .. ...++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++
T Consensus 69 -----------~~~-----------~~-~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~ 125 (248)
T cd04194 69 -----------FKF-----------FP-ATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLL 125 (248)
T ss_pred -----------Hhc-----------CC-cccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEE
Confidence 000 00 0134678999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChhhh
Q 008561 409 GAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPGLI 487 (561)
Q Consensus 409 aAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~li 487 (561)
|||+||......... . ........+||||||||+|+++||+.++++++.++++.+.. ..+.|||+|| .
T Consensus 126 aa~~d~~~~~~~~~~-~-------~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN---~ 194 (248)
T cd04194 126 AAVRDPFIEQEKKRK-R-------RLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILN---A 194 (248)
T ss_pred EEEecccHHHHHHHH-h-------hcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHH---H
Confidence 999998753211110 0 11233567899999999999999999999999999877654 4567999999 6
Q ss_pred ccCCceeecCCccccccCCCCCCC--------ChhhcCCcEEEEccCCCCCcc
Q 008561 488 TFYSTTKPLDKSWHVLGLGYNPSI--------SMEEIQNAAVVHFNGNMKPWL 532 (561)
Q Consensus 488 ~f~g~i~~Ld~~WN~~~lgy~~~i--------~~e~i~~~~IIHy~G~~KPW~ 532 (561)
+|.++++.||.+||++...+.... .....++++||||+|+.|||.
T Consensus 195 ~~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 195 VLKDKILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred HHhCCeEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 999999999999999875443211 123568999999999999996
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.2e-38 Score=326.26 Aligned_cols=253 Identities=19% Similarity=0.290 Sum_probs=196.7
Q ss_pred eeEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHH
Q 008561 250 LYHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (561)
Q Consensus 250 ~iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl 327 (561)
.++||+++|+ + .+++|+|.|++.|++. ..+.|||++|+++.+.++++-++..+.+..+.+.-++.-+
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~---------- 70 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEP---------- 70 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechh----------
Confidence 4789999995 5 5899999999999996 4699999999999999999998887777666554442100
Q ss_pred HhhhhhhhhhhhhhcccccccccccccccC-CCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCC
Q 008561 328 RQLESANLQRFYFENKLENATKDTTNMKFR-NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGK 406 (561)
Q Consensus 328 ~~le~~~~~~~~F~~~~~~~~~~~~~l~~~-~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gk 406 (561)
|.. ++ ..+.+|.++|+||++|++||+++|+||||+|+||+|||++||.+|++|+
T Consensus 71 ------------~~~-------------~~~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~ 125 (325)
T COG1442 71 ------------FLD-------------YPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEY 125 (325)
T ss_pred ------------hhc-------------ccccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcc
Confidence 000 01 2356899999999999999999999999999999999999999999999
Q ss_pred EEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcC-CCCCCCcCCCChh
Q 008561 407 VNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNE-NRTLWKLGTLPPG 485 (561)
Q Consensus 407 viaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~-~~~l~DQd~LN~~ 485 (561)
++|||.|+.... ..+.. .-.........|||+|||++|+++||++++++++.++++..+ +....|||+||
T Consensus 126 ~~aaV~D~~~~~--~~~~~-----~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN-- 196 (325)
T COG1442 126 YLAAVRDVFSHY--MKEGA-----LRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPDQDILN-- 196 (325)
T ss_pred eEEEEeehhhhh--hhhhh-----hHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCccccHHH--
Confidence 999999986421 11000 001112235679999999999999999999999999985544 45677999999
Q ss_pred hhccCCceeecCCccccccCC-CCCCC--ChhhcCCcEEEEccCCCCCccccccCCCH-HHHHHHhc
Q 008561 486 LITFYSTTKPLDKSWHVLGLG-YNPSI--SMEEIQNAAVVHFNGNMKPWLDIAMNQFK-PLWTKYVD 548 (561)
Q Consensus 486 li~f~g~i~~Ld~~WN~~~lg-y~~~i--~~e~i~~~~IIHy~G~~KPW~~~~~~~y~-~lW~kY~~ 548 (561)
++|+|++.+||.+||++... +.... ....-.+|.|+||+|+.|||...+.+.++ .+|.....
T Consensus 197 -~i~~~~~~~L~~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~ 262 (325)
T COG1442 197 -MIFEDRVLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILA 262 (325)
T ss_pred -HHHHhhhhccCcccceeehhhhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHh
Confidence 79999999999999999532 11110 12234678999999999999999866553 66666554
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=1.2e-36 Score=297.36 Aligned_cols=244 Identities=25% Similarity=0.393 Sum_probs=168.1
Q ss_pred EEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHh
Q 008561 252 HYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQ 329 (561)
Q Consensus 252 HIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~ 329 (561)
||++++|. + .+++|+++|+++|++++..++|||++++++.+..+.+............+...+. . .
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--------~--- 68 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDI-S--------M--- 68 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSG-G--------H---
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchH-H--------h---
Confidence 79999995 4 5899999999999998788999999999999988887665432221111111100 0 0
Q ss_pred hhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEE
Q 008561 330 LESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNG 409 (561)
Q Consensus 330 le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkvia 409 (561)
++ .+. .......+++..+|+||++|++||+++||||||+|+||.+||++||+++++|+.+|
T Consensus 69 ~~-------~~~------------~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~ 129 (250)
T PF01501_consen 69 LE-------EFQ------------FNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLA 129 (250)
T ss_dssp HH---------T------------TS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEE
T ss_pred hh-------hhh------------hcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhcc
Confidence 00 000 01122356899999999999999999999999999999999999999999999999
Q ss_pred EEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChhhhc
Q 008561 410 AVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPGLIT 488 (561)
Q Consensus 410 AV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~li~ 488 (561)
|++++... .. .....+..........+|||+||||+|+++||++++.+++..+++.+.. ..+.||++|| ++
T Consensus 130 a~~~~~~~--~~---~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln---~~ 201 (250)
T PF01501_consen 130 AVEDESFD--NF---PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILN---IV 201 (250)
T ss_dssp EEE----H--HH---HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHH---HH
T ss_pred ccccchhh--hh---hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHh---hh
Confidence 99993211 11 0000011111233568999999999999999999999999999876544 4667999999 68
Q ss_pred cCCceeecCCccccccCCCCCC--CChhhcCCcEEEEccCCCCCcccc
Q 008561 489 FYSTTKPLDKSWHVLGLGYNPS--ISMEEIQNAAVVHFNGNMKPWLDI 534 (561)
Q Consensus 489 f~g~i~~Ld~~WN~~~lgy~~~--i~~e~i~~~~IIHy~G~~KPW~~~ 534 (561)
|.++++.||.+||++..++... ......++++||||+|..|||..+
T Consensus 202 ~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 202 FYGNIKPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp HTTGEEEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ccceeEEECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 9999999999999997554100 112345899999999999999875
No 17
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=1.8e-33 Score=283.47 Aligned_cols=230 Identities=15% Similarity=0.180 Sum_probs=166.4
Q ss_pred EEEE-EcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHH
Q 008561 252 HYAI-FSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLR 328 (561)
Q Consensus 252 HIai-~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~ 328 (561)
||.. .+|+ + .+++|++.|+++|+. ..++|||++++++.+..+.+-++....+++++++.++.-.|+.
T Consensus 2 ni~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~-------- 71 (248)
T cd06432 2 NIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH-------- 71 (248)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh--------
Confidence 4444 4444 4 579999999999985 5799999999999998888877776668888887763111110
Q ss_pred hhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhccCCCCCE
Q 008561 329 QLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKIDMDGKV 407 (561)
Q Consensus 329 ~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~lDL~gkv 407 (561)
. ..... ....+|.|++++++|| +++||||||+|+||.+||++||++||+|++
T Consensus 72 -------------~-------------~~~~~-~~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~ 124 (248)
T cd06432 72 -------------K-------------QTEKQ-RIIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAP 124 (248)
T ss_pred -------------c-------------ccccc-hhHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCe
Confidence 0 00001 1346789999999999 599999999999999999999999999999
Q ss_pred EEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHH---HcCC-CCCCCcCCCC
Q 008561 408 NGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQN---LNEN-RTLWKLGTLP 483 (561)
Q Consensus 408 iaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~---~~~~-~~l~DQd~LN 483 (561)
+|||+||.... +......+.....+..+ .+..|||||||||||++||++++++++.++++ .+.. ..++|||+||
T Consensus 125 ~Aav~d~~~~~-~~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN 202 (248)
T cd06432 125 YGYTPFCDSRK-EMDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPN 202 (248)
T ss_pred EEEeeccccch-hcccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhH
Confidence 99999986421 10000000000001122 24569999999999999999999997776653 3322 4667999999
Q ss_pred hhhhccCCc-eeecCCccccccCCCCCCCChhhcCCcEEEEccCC
Q 008561 484 PGLITFYST-TKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGN 527 (561)
Q Consensus 484 ~~li~f~g~-i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~ 527 (561)
.++.+. +++||.+||++.. + ...+..+.|.+|||+.+
T Consensus 203 ---~v~~~~~i~~Lp~~w~~~~~-~---~~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 203 ---NMQHQVPIFSLPQEWLWCET-W---CSDESKKKAKTIDLCNN 240 (248)
T ss_pred ---HHhccCCeEECChHHHHHHH-H---hcccccCccceeecccC
Confidence 477775 9999999999742 1 12345678999999874
No 18
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=7e-33 Score=285.26 Aligned_cols=250 Identities=15% Similarity=0.263 Sum_probs=170.7
Q ss_pred eEEEE-EcC-CcchhHHHHHHHHHhCCCCCcEEEEEEecC-CChHHHHHHHhhccCCCceE--EEEEecccccccccchh
Q 008561 251 YHYAI-FSD-NVLAASVVVNSAVKNSKEPWKHVFHVVTDK-MNLGAMQVMFKLKDYNGAHI--EVKAVEDYKFLNSSYVP 325 (561)
Q Consensus 251 iHIai-~sD-NvlaasVvI~Sil~Ns~~p~~l~FHIvtD~-~~~~~m~~wf~l~~~~~a~I--~V~~i~df~~l~~~~~P 325 (561)
+|+|+ +++ +.-.+-|+|+|++.|+. ..++|||++|+ ...+..+++.+........+ .++.+ . .|
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I---~------~P 69 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPI---T------FP 69 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEE---e------cC
Confidence 35554 344 45568999999999985 56999999998 44444333333322222333 33222 1 01
Q ss_pred HHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhcc--CC
Q 008561 326 VLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKI--DM 403 (561)
Q Consensus 326 vl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~l--DL 403 (561)
. . . .-.+ ++.+++.+|+||++|++||++|||||||+|+||.+||++||++ |+
T Consensus 70 ~----------------~------~--~~~w--s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df 123 (304)
T cd06430 70 S----------------G------N--AAEW--KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKF 123 (304)
T ss_pred c----------------c------c--hhhh--hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhc
Confidence 0 0 0 0011 1345679999999999999999999999999999999999999 99
Q ss_pred CCC-EEEEEecCccC-ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHH-----------hhHHHHHHHHHHH
Q 008561 404 DGK-VNGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRR-----------EKCTEEYHYWQNL 470 (561)
Q Consensus 404 ~gk-viaAV~d~~~~-~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~-----------~nitek~~~~l~~ 470 (561)
+|+ ++|++++.... ...+.... .+| + .+..|||||||+|||++||+ .++++++.+++++
T Consensus 124 ~~~~~aA~v~e~~~~~~~~~~~~~--~~~-----~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (304)
T cd06430 124 NSTQLAAMAPEHEEPNIGWYNRFA--RHP-----Y-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKK 195 (304)
T ss_pred CCCeEEEEEecccccchhhhhhhc--ccC-----c-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHh
Confidence 986 55556553211 01111000 111 1 12347999999999999999 7889999999877
Q ss_pred cCC-CCCCCcCCCChhhhccCCc---eeecCCccccccCC--CCCCCChhhcCCcEEEEccCCCCCccccccCCCHHHHH
Q 008561 471 NEN-RTLWKLGTLPPGLITFYST---TKPLDKSWHVLGLG--YNPSISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWT 544 (561)
Q Consensus 471 ~~~-~~l~DQd~LN~~li~f~g~---i~~Ld~~WN~~~lg--y~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~ 544 (561)
+.. ..+.|||+|| ++|.++ ++.||.+||++... |..+....+.+.++|||++++.| .....+.++.++.
T Consensus 196 ~~~~l~~~DQDiLN---~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~ 270 (304)
T cd06430 196 YKLKITWGDQDLIN---IIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYE 270 (304)
T ss_pred cccCCCCCCHHHHH---HHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHH
Confidence 644 5678999999 588887 99999999987632 22223233457899999998776 4444566888888
Q ss_pred HHhcCC
Q 008561 545 KYVDYD 550 (561)
Q Consensus 545 kY~~~~ 550 (561)
-..+++
T Consensus 271 ~~~~~~ 276 (304)
T cd06430 271 AIREYT 276 (304)
T ss_pred HHHhcc
Confidence 888777
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.94 E-value=6.8e-26 Score=226.71 Aligned_cols=213 Identities=17% Similarity=0.099 Sum_probs=149.2
Q ss_pred Cc-chhHHHHHHHHHhCCCCCcEEEEE-EecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhhhhhhhh
Q 008561 259 NV-LAASVVVNSAVKNSKEPWKHVFHV-VTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQ 336 (561)
Q Consensus 259 Nv-laasVvI~Sil~Ns~~p~~l~FHI-vtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~le~~~~~ 336 (561)
++ .+++|++.|+++|+++ +.+|| ++++++.+.++.+.... .+++.++.++.-. ..
T Consensus 11 ~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~--------------~~ 67 (240)
T cd02537 11 DYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPD--------------SA 67 (240)
T ss_pred hHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcc--------------hh
Confidence 55 5799999999999875 34444 45679988887776542 2333333211100 00
Q ss_pred hhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCcc
Q 008561 337 RFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFG 416 (561)
Q Consensus 337 ~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~ 416 (561)
. .....++..+|.||+++++. +++||||||+|+||.+||++||++ +..++|+.|+..
T Consensus 68 ----------------~---~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~ 124 (240)
T cd02537 68 ----------------N---LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW 124 (240)
T ss_pred ----------------h---hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc
Confidence 0 00123566789999999975 599999999999999999999987 667888877531
Q ss_pred CccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChhhhccCCc--ee
Q 008561 417 SFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYST--TK 494 (561)
Q Consensus 417 ~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~li~f~g~--i~ 494 (561)
..|||||||++|++. ++.+.+.+++.........|||+|| .+|.++ +.
T Consensus 125 -----------------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~~~~~DQdiLN---~~~~~~~~~~ 174 (240)
T cd02537 125 -----------------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPSFDGGDQGLLN---SYFSDRGIWK 174 (240)
T ss_pred -----------------------cccccceEEEEcCCH----HHHHHHHHHHhccCCCCCCCHHHHH---HHHcCCCCEe
Confidence 248999999999964 4556666666554445667999999 589999 99
Q ss_pred ecCCccccccCCCCCCCC-hhhcCCcEEEEccCCCCCccccccC---------CCHHHHHHHh
Q 008561 495 PLDKSWHVLGLGYNPSIS-MEEIQNAAVVHFNGNMKPWLDIAMN---------QFKPLWTKYV 547 (561)
Q Consensus 495 ~Ld~~WN~~~lgy~~~i~-~e~i~~~~IIHy~G~~KPW~~~~~~---------~y~~lW~kY~ 547 (561)
.||.+||++...+..... ....++|+||||+|+.|||...+.. .....||+..
T Consensus 175 ~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~ 237 (240)
T cd02537 175 RLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIY 237 (240)
T ss_pred ECCcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHH
Confidence 999999998643321111 1234689999999999999876543 2356676654
No 20
>PLN00176 galactinol synthase
Probab=99.93 E-value=9.1e-25 Score=228.10 Aligned_cols=238 Identities=18% Similarity=0.281 Sum_probs=153.0
Q ss_pred EEcC-Cc-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhhhh
Q 008561 255 IFSD-NV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLES 332 (561)
Q Consensus 255 i~sD-Nv-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~le~ 332 (561)
+++| ++ .++.|+.+|+.++... .++ +.+||++++.+..+.+... ++ .|+.|+.+ . |. +.
T Consensus 29 L~~n~~Y~~Ga~vL~~SLr~~~s~-~~l-VvlVt~dVp~e~r~~L~~~----g~--~V~~V~~i---~----~~----~~ 89 (333)
T PLN00176 29 LAGNGDYVKGVVGLAKGLRKVKSA-YPL-VVAVLPDVPEEHRRILVSQ----GC--IVREIEPV---Y----PP----EN 89 (333)
T ss_pred EecCcchHHHHHHHHHHHHHhCCC-CCE-EEEECCCCCHHHHHHHHHc----CC--EEEEeccc---C----Cc----cc
Confidence 3444 55 5899999999877432 233 3345688988765554432 22 23333321 0 10 00
Q ss_pred hhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEe
Q 008561 333 ANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVE 412 (561)
Q Consensus 333 ~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~ 412 (561)
.-.+..+. -..+|.||.++++. +++||||||+|+||.++|++||+++ .| .+|||.
T Consensus 90 --------------------~~~~~~~~--~~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~-~~-~~aAV~ 144 (333)
T PLN00176 90 --------------------QTQFAMAY--YVINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP-DG-YFYAVM 144 (333)
T ss_pred --------------------ccccccch--hhhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC-Cc-ceEEEe
Confidence 00111111 13467799999977 5899999999999999999999884 33 589999
Q ss_pred cCccCcc--chhc-----------ccCCCchhhhccCC-CCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCC
Q 008561 413 TCFGSFH--RYAQ-----------YMNFSHPLIKAKFN-PKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWK 478 (561)
Q Consensus 413 d~~~~~~--~~~~-----------~lnfs~p~i~~~f~-~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~D 478 (561)
||.++.. .+.. .++| |. ..+ +...||||||||||++.|+.+++.+ +++.+....+.|
T Consensus 145 dc~~~~~~~~~p~~~~~~c~~~~~~~~w--p~---~~g~~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~~~~f~D 215 (333)
T PLN00176 145 DCFCEKTWSHTPQYKIGYCQQCPDKVTW--PA---ELGPPPPLYFNAGMFVFEPSLSTYEDLLE----TLKITPPTPFAE 215 (333)
T ss_pred cccccccccccccccccccccchhhccc--hh---hccCCCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcCCCCCCC
Confidence 9975411 1110 1111 10 011 2467999999999999999877654 444444556789
Q ss_pred cCCCChhhhccCCceeecCCccccccCC-CCCCCChhhcCCcEEEEccC-CCCCccccccCC---------CHHHHHHHh
Q 008561 479 LGTLPPGLITFYSTTKPLDKSWHVLGLG-YNPSISMEEIQNAAVVHFNG-NMKPWLDIAMNQ---------FKPLWTKYV 547 (561)
Q Consensus 479 Qd~LN~~li~f~g~i~~Ld~~WN~~~lg-y~~~i~~e~i~~~~IIHy~G-~~KPW~~~~~~~---------y~~lW~kY~ 547 (561)
||+|| +.|.++|++||.+||++... +... .....++++||||+| ..|||...+.+. +.+.||..+
T Consensus 216 QD~LN---~~F~~~~~~Lp~~YN~~~~~~~~~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~ 291 (333)
T PLN00176 216 QDFLN---MFFRDIYKPIPPVYNLVLAMLWRHP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIY 291 (333)
T ss_pred HHHHH---HHHcCcEEECCchhcCchhhhhhCh-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHh
Confidence 99999 79999999999999998521 1110 011246899999997 589998765321 345787765
Q ss_pred cC
Q 008561 548 DY 549 (561)
Q Consensus 548 ~~ 549 (561)
+.
T Consensus 292 ~~ 293 (333)
T PLN00176 292 ND 293 (333)
T ss_pred cc
Confidence 53
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.76 E-value=8.1e-19 Score=179.72 Aligned_cols=141 Identities=13% Similarity=0.212 Sum_probs=109.1
Q ss_pred CcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCC
Q 008561 361 YLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKA 440 (561)
Q Consensus 361 y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~ 440 (561)
.++. +|.||.++++ ++++||||||+|+||.++|++||+++.. ..+||+.. .
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap~~-~------------------------- 126 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAPRA-Y------------------------- 126 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcc-cceeeecC-c-------------------------
Confidence 3444 5999999999 5799999999999999999999998833 33454321 0
Q ss_pred CccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChhhhccCCc-------eeecCCc-cccccCCCCC---
Q 008561 441 CAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYST-------TKPLDKS-WHVLGLGYNP--- 509 (561)
Q Consensus 441 ~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~li~f~g~-------i~~Ld~~-WN~~~lgy~~--- 509 (561)
.||||||||||+++|+.+++++++.+....+ ...+|||+|| .+|.|. +..||.+ ||++..-+..
T Consensus 127 ~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~--~~~~DQdiLN---~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~ 201 (278)
T cd06914 127 WKFASHLMVIKPSKEAFKELMTEILPAYLNK--KNEYDMDLIN---EEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLH 201 (278)
T ss_pred ceecceeEEEeCCHHHHHHHHHHHHHhcccC--CCCCChHHHH---HHHhCCccccCcceEEcCccccccCChhhcccCH
Confidence 1789999999999999999999988765332 2568999999 689999 9999997 9988532111
Q ss_pred -----C-------CCh-hhcCCcEEEEccCC--CCCccccc
Q 008561 510 -----S-------ISM-EEIQNAAVVHFNGN--MKPWLDIA 535 (561)
Q Consensus 510 -----~-------i~~-e~i~~~~IIHy~G~--~KPW~~~~ 535 (561)
+ .+. +.++++++|||++. .|||....
T Consensus 202 ~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~ 242 (278)
T cd06914 202 KSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNN 242 (278)
T ss_pred HHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence 0 011 34578999999986 69998764
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.1e-12 Score=149.52 Aligned_cols=258 Identities=18% Similarity=0.255 Sum_probs=182.6
Q ss_pred CCceeEEEEEcCCc---chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccc
Q 008561 247 DPKLYHYAIFSDNV---LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSY 323 (561)
Q Consensus 247 d~~~iHIai~sDNv---laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~ 323 (561)
|.+.|+|.-..... .-+-.+|.|+++|++.| +.|.++-+-++..-.+.+=.++..++-.+++.. |+|=
T Consensus 1178 ~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~---YkWP---- 1248 (1470)
T KOG1879|consen 1178 DKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ---YKWP---- 1248 (1470)
T ss_pred ccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEE---ecCc----
Confidence 34478887554432 24789999999999987 999999998887655555555555665555543 4551
Q ss_pred hhHHHhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhccC
Q 008561 324 VPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKID 402 (561)
Q Consensus 324 ~Pvl~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~lD 402 (561)
.+|+|..+.. | -+..|--||+--||| +++||||+|+|-||+.||.||.++|
T Consensus 1249 -rWLhqQ~EKQ----------------------R-----iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfd 1300 (1470)
T KOG1879|consen 1249 -RWLHQQTEKQ----------------------R-----IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFD 1300 (1470)
T ss_pred -hhhhhhhhhh----------------------h-----hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcc
Confidence 2444332211 1 235566688899999 6999999999999999999999999
Q ss_pred CCCCEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHH-HHHHcCCC-CC--CC
Q 008561 403 MDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHY-WQNLNENR-TL--WK 478 (561)
Q Consensus 403 L~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~-~l~~~~~~-~l--~D 478 (561)
++|.+.|-++-|..+ .....|..|+...+++.. .+..|..|...|+||+++|+-.-.+++.- |+....|. .+ .|
T Consensus 1301 l~GaPygYtPfCdsR-~EMDGyRFWK~GYW~~hL-~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLD 1378 (1470)
T KOG1879|consen 1301 LGGAPYGYTPFCDSR-REMDGYRFWKQGYWKKHL-RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLD 1378 (1470)
T ss_pred cCCCccccCcccccc-ccccchhHHhhhHHHHHh-ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhcc
Confidence 999999999999753 233444445544444433 34779999999999999999888888753 44433332 23 39
Q ss_pred cCCCChhhhccCCceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCcccc----ccCCCHHHHHHHhcCCh
Q 008561 479 LGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDI----AMNQFKPLWTKYVDYDL 551 (561)
Q Consensus 479 Qd~LN~~li~f~g~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~----~~~~y~~lW~kY~~~~~ 551 (561)
||.=|. +...-.|+.||..|-++. .+++.+..+++++|--|.+ ||-.. +..+....|..|..--.
T Consensus 1379 QDLPNn--m~hqVpIkSLPqeWLWCE----TWC~d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dyD~Ei~ 1447 (1470)
T KOG1879|consen 1379 QDLPNN--MQHQVPIKSLPQEWLWCE----TWCDDESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDYDAEIR 1447 (1470)
T ss_pred cccccc--ceeecccccCCcchhhhh----hhcCchhhhhchhhhhhcC--ccccchhhHHHhhhcCCCcccchHHH
Confidence 998764 567788999999997664 3445566788999999975 77544 23456677877755433
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=8.2e-07 Score=91.48 Aligned_cols=155 Identities=16% Similarity=0.231 Sum_probs=85.9
Q ss_pred hhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccC---ccchhc------------------
Q 008561 365 LNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGS---FHRYAQ------------------ 423 (561)
Q Consensus 365 ~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~---~~~~~~------------------ 423 (561)
.++.++.+-+.. ++|||+|||+|.||.+++++||+.. -+-.+|.+|.... ||+...
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~ 231 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRA 231 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHh
Confidence 455666665655 5899999999999999999999865 2334454443221 222222
Q ss_pred -----ccCCC--chh-hhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChhhhcc--CC--
Q 008561 424 -----YMNFS--HPL-IKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITF--YS-- 491 (561)
Q Consensus 424 -----~lnfs--~p~-i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~li~f--~g-- 491 (561)
++++. ++. +...+.+-..+||+|.||++..+.--..+..-. +=+...+..+-.|..+| +.+ .|
T Consensus 232 ~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~a--lPklydda~mmeqslln---laYn~~g~F 306 (368)
T COG5597 232 ALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFA--LPKLYDDADMMEQSLLN---LAYNYEGFF 306 (368)
T ss_pred hhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHh--hHHhhhhhhHHHHHHHH---HHHhhhccC
Confidence 22221 111 111222235689999999999874433321111 11222222333466666 232 23
Q ss_pred ceeecCCccccccCCCCCCCChhhcCCcEEEEccCCCCCccccccC
Q 008561 492 TTKPLDKSWHVLGLGYNPSISMEEIQNAAVVHFNGNMKPWLDIAMN 537 (561)
Q Consensus 492 ~i~~Ld~~WN~~~lgy~~~i~~e~i~~~~IIHy~G~~KPW~~~~~~ 537 (561)
.|..++.+|| ||. .+.+++.-.+-+|+ |||...+..
T Consensus 307 Pwerld~~yN----G~w--a~~ndlPylka~Hg----K~W~y~g~~ 342 (368)
T COG5597 307 PWERLDPRYN----GYW--ADANDLPYLKAWHG----KPWFYTGEQ 342 (368)
T ss_pred chhhcCcccc----ccc--ccccccchHHHhhc----CcCCCCccc
Confidence 5677777777 442 12233333455666 999988753
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=96.00 E-value=0.023 Score=55.53 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=79.7
Q ss_pred cchhhhHHHh-hhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCCCchhhhccCCCCC
Q 008561 362 LSILNHLRFY-LPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKA 440 (561)
Q Consensus 362 ~S~~~y~Rl~-iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~ 440 (561)
+..+...|.- +-+++..=--|+|+|+|++..+|..++++ -.+.-+.+..|+..... .....
T Consensus 48 ~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~--~~~~Di~~~~d~~~~~~----------------~~~~~ 109 (212)
T PF03407_consen 48 FQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFE--NPDADILFSSDGWDGTN----------------SDRNG 109 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhc--cCCCceEEecCCCcccc----------------hhhcC
Confidence 3445556644 45666542459999999999999999992 13333444445542100 00112
Q ss_pred CccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChhhhcc-----CCceeecCCccccccCCCCCC-CCh
Q 008561 441 CAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPGLITF-----YSTTKPLDKSWHVLGLGYNPS-ISM 513 (561)
Q Consensus 441 ~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~li~f-----~g~i~~Ld~~WN~~~lgy~~~-i~~ 513 (561)
..+|+|++.+--.. ....-+.+|.+.... ...+||.++|-.+..- .-++..||..--..+.+|-.. ...
T Consensus 110 ~~~n~G~~~~r~t~----~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~ 185 (212)
T PF03407_consen 110 NLVNTGFYYFRPTP----RTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDW 185 (212)
T ss_pred CccccceEEEecCH----HHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchh
Confidence 23589999986543 222334556543222 3457999999654332 224677776544333333211 111
Q ss_pred hh---cCCcEEEEccCC
Q 008561 514 EE---IQNAAVVHFNGN 527 (561)
Q Consensus 514 e~---i~~~~IIHy~G~ 527 (561)
.. ...|.++|.++.
T Consensus 186 ~~~~~~~~p~~vH~n~~ 202 (212)
T PF03407_consen 186 AWVPTKNKPYIVHANCC 202 (212)
T ss_pred hhhccccccceEEEcCC
Confidence 11 247999999863
No 25
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=90.88 E-value=1.1 Score=48.82 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=84.8
Q ss_pred CCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCC--EEEEEecCccCccchhcccCCCchhhhccC
Q 008561 359 PKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGK--VNGAVETCFGSFHRYAQYMNFSHPLIKAKF 436 (561)
Q Consensus 359 p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gk--viaAV~d~~~~~~~~~~~lnfs~p~i~~~f 436 (561)
|.+|+...++|=.+- -+|+.+-+.|||+|.||..-- +++.+..+ .+-.+ |.+...+ ..
T Consensus 179 p~~WaKlpaLR~aM~-~~PeaEWiWWLDsDALImNms---felPlery~~~NlVi-------hg~~~~l---------~~ 238 (429)
T PLN03182 179 AGFWAKLPLLRKLML-AHPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVI-------HGWDELV---------YD 238 (429)
T ss_pred CcchhHHHHHHHHHH-HCCCceEEEEecCCceeecCC---CCCCHhHcCCcCeee-------ccchhhh---------ee
Confidence 456777777765443 268999999999999998631 12233211 01111 1111111 01
Q ss_pred CCCCCccccceEEEecHHHHHhhHHHH----------HHHH---HH-HcCCCCC---CCcCCCChhhhccC---Cceeec
Q 008561 437 NPKACAWAYGMNFFDLDAWRREKCTEE----------YHYW---QN-LNENRTL---WKLGTLPPGLITFY---STTKPL 496 (561)
Q Consensus 437 ~~~~~yfNSGVmLiNL~kWR~~nitek----------~~~~---l~-~~~~~~l---~DQd~LN~~li~f~---g~i~~L 496 (561)
..+-.+.|+|+++|-.-.|--.-+ +. ..+| +. .-.++.. -||.+|-..|+.-. +.-..|
T Consensus 239 ~kdW~GLNtGsFLIRNcqWSldlL-DaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~l 317 (429)
T PLN03182 239 QKSWIGLNTGSFLIRNCQWSLDLL-DAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYL 317 (429)
T ss_pred ccccCccceeeEEEEcCHHHHHHH-HHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEE
Confidence 133457899999998777765432 11 1111 11 1123333 37888865443332 222456
Q ss_pred CCccccccCC------CCCC-----CChhhcCCcEEEEccCCCCCccccccCCCHHHHH
Q 008561 497 DKSWHVLGLG------YNPS-----ISMEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWT 544 (561)
Q Consensus 497 d~~WN~~~lg------y~~~-----i~~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~ 544 (561)
...|-+.|.- |+.. .....-+-|.|.||+| .||-...+..+-..-|.
T Consensus 318 e~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~G-ckpC~~~~~y~~~~C~~ 375 (429)
T PLN03182 318 ENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVG-CKPCGGYGDYPVERCLK 375 (429)
T ss_pred eecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeecc-ceecCCCCCcCHHHHHH
Confidence 6666665420 1100 0011234589999999 79986554333334443
No 26
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=86.51 E-value=2.6 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=27.3
Q ss_pred hhhhhcccCCeEEEeecCeeEecCchhhhccC
Q 008561 371 YLPEMYPKLHRILFLDDDIVVQRDLTGLWKID 402 (561)
Q Consensus 371 ~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lD 402 (561)
.+.-++...+.||+||+|.|...|++.||+.+
T Consensus 83 ~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 83 WLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 34556767899999999999999999999853
No 27
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=83.47 E-value=0.79 Score=46.56 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=12.6
Q ss_pred ccCCeEEEeecCeeEecCchhhhccCCCCCEEE--EEecCccC-ccchhcccCCCchh-hhccCCCCCCccccceEEEec
Q 008561 377 PKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNG--AVETCFGS-FHRYAQYMNFSHPL-IKAKFNPKACAWAYGMNFFDL 452 (561)
Q Consensus 377 P~ldKVLYLD~DvIV~~DLseLw~lDL~gkvia--AV~d~~~~-~~~~~~~lnfs~p~-i~~~f~~~~~yfNSGVmLiNL 452 (561)
|+.+-|+|||+|.+|..-=-+|-+.=|+...+- ...+.... ...+.+..+...+. +.-....+..+.|+|++++--
T Consensus 75 P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFliRn 154 (239)
T PF05637_consen 75 PEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFLIRN 154 (239)
T ss_dssp TT-SEEEEE-TTEEE-----------------------------------------------------------------
T ss_pred CCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 889999999999999865444432211111100 00000000 00010000000110 000122466789999999977
Q ss_pred HHHHHhhHHHHHHHHHHHcCCC---CCCCcCCCChhhh---ccCCceeecCCccccccCCCCCC-CChhhcCCcEEEEcc
Q 008561 453 DAWRREKCTEEYHYWQNLNENR---TLWKLGTLPPGLI---TFYSTTKPLDKSWHVLGLGYNPS-ISMEEIQNAAVVHFN 525 (561)
Q Consensus 453 ~kWR~~nitek~~~~l~~~~~~---~l~DQd~LN~~li---~f~g~i~~Ld~~WN~~~lgy~~~-i~~e~i~~~~IIHy~ 525 (561)
..|-+. +.+.+.+......+. ...+|++|--.+. .+.+++..+|.+|=- .|... .....-+..-|+||.
T Consensus 155 s~ws~~-fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~n---sy~~~~~~~~~~~GDfvvhfa 230 (239)
T PF05637_consen 155 SPWSRD-FLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFN---SYPEDECNYQYKEGDFVVHFA 230 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccc
Confidence 777664 223332222111222 2347888863221 233455556654411 12111 001223456799999
Q ss_pred C
Q 008561 526 G 526 (561)
Q Consensus 526 G 526 (561)
|
T Consensus 231 G 231 (239)
T PF05637_consen 231 G 231 (239)
T ss_dssp -
T ss_pred c
Confidence 8
No 28
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=72.65 E-value=43 Score=35.06 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=64.3
Q ss_pred hcccCCeEEEeecCeeEecCch-hhhccCCCCCEEEEEecCccC--cc--chhcccCCCchhhhccCCCCCCccccceEE
Q 008561 375 MYPKLHRILFLDDDIVVQRDLT-GLWKIDMDGKVNGAVETCFGS--FH--RYAQYMNFSHPLIKAKFNPKACAWAYGMNF 449 (561)
Q Consensus 375 LlP~ldKVLYLD~DvIV~~DLs-eLw~lDL~gkviaAV~d~~~~--~~--~~~~~lnfs~p~i~~~f~~~~~yfNSGVmL 449 (561)
++.++|-+.++|+|+++++++. |.. |..+|...-..-. .. .|...- -|...| .++.+.-|+.+|++=
T Consensus 120 ~~~e~DYlF~~dvd~~F~~~ig~E~L-----g~lva~lHp~~y~~~~~~fpYERrp-~S~AyI--p~~eGdfYy~Ga~~G 191 (271)
T cd02515 120 IGHEVDYLFCMDVDMVFQGPFGVETL-----GDSVAQLHPWWYGKPRKQFPYERRP-SSAAYI--PEGEGDFYYHGAVFG 191 (271)
T ss_pred hcccCCEEEEeeCCceEeecCCHHHh-----hhhheecChhhhcCCCCCCCCcCCC-Cccccc--cCCCCCeEEeeeecC
Confidence 4557999999999999999986 322 2344443322100 00 111000 011111 244566777777763
Q ss_pred EecHHHHHhhHHHHHHHHHHH---cCCCCCC-CcCCCChhhhccCCc-eeecCCcccccc
Q 008561 450 FDLDAWRREKCTEEYHYWQNL---NENRTLW-KLGTLPPGLITFYST-TKPLDKSWHVLG 504 (561)
Q Consensus 450 iNL~kWR~~nitek~~~~l~~---~~~~~l~-DQd~LN~~li~f~g~-i~~Ld~~WN~~~ 504 (561)
=-.++.. ++++.|..-+.. ++-...| |..-||-.+ +.++ ++.|++.|.+..
T Consensus 192 G~~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDESHLNkYf--~~~Kp~KiLSPeY~w~e 247 (271)
T cd02515 192 GSVEEVY--RLTRACHEGILADKANGIEARWHDESHLNKYF--LLHKPTKVLSPEYLWDD 247 (271)
T ss_pred ccHHHHH--HHHHHHHHHHHHHHhCCceEEeecHhHhHHHH--hhCCCCeecChhhcCCc
Confidence 2222222 255666655422 2222345 888999743 3444 999999998764
No 29
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=70.66 E-value=15 Score=40.89 Aligned_cols=114 Identities=16% Similarity=0.285 Sum_probs=64.3
Q ss_pred EEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhhhh
Q 008561 253 YAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLES 332 (561)
Q Consensus 253 Iai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~le~ 332 (561)
++++++..-++.-+|.|++++....+.+.+.|--|+.+.+..+..... . -.++ .++..+ +.|+. ..
T Consensus 98 lV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y---~-~~v~--~i~~~~-----~~~i~--~~- 163 (434)
T PF03071_consen 98 LVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSY---G-DQVT--YIQHPD-----FSPIT--IP- 163 (434)
T ss_dssp EEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGG---G-GGSE--EEE-S-------S--------
T ss_pred EEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHh---h-hhhe--eeecCC-----cCCce--eC-
Confidence 445666678899999999998765567777777788776655543322 1 1111 111110 11110 00
Q ss_pred hhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhccc--CCeEEEeecCeeEecCchhhhc
Q 008561 333 ANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK--LHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 333 ~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~--ldKVLYLD~DvIV~~DLseLw~ 400 (561)
. ...++ ..|..++.|+|.-+-.+|.. +++||.|.+|+.|--|.=+-|+
T Consensus 164 -----------------~-~~~~~--~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 164 -----------------P-KEKKF--KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp -----------------T-T-GGG--HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred -----------------c-ccccc--cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 0 00011 13567889999999999973 8999999999999999866655
No 30
>PLN03181 glycosyltransferase; Provisional
Probab=70.55 E-value=16 Score=40.28 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecC
Q 008561 359 PKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRD 394 (561)
Q Consensus 359 p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~D 394 (561)
|..|+..-..|=.+- -+|+.+-+.|||.|.||...
T Consensus 180 p~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 180 NSYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred chhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 345666666663332 28899999999999999865
No 31
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=67.66 E-value=7.7 Score=41.80 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=73.7
Q ss_pred cccCCeEEEeecCeeEecCchhhhccCCC-C--CEEEEEecCccCccchhc-ccCCCch--h---hhccCCC--CCCccc
Q 008561 376 YPKLHRILFLDDDIVVQRDLTGLWKIDMD-G--KVNGAVETCFGSFHRYAQ-YMNFSHP--L---IKAKFNP--KACAWA 444 (561)
Q Consensus 376 lP~ldKVLYLD~DvIV~~DLseLw~lDL~-g--kviaAV~d~~~~~~~~~~-~lnfs~p--~---i~~~f~~--~~~yfN 444 (561)
|.+.++++|+|.|+.+..++...+++-.. + +......+.....-.+.. .....++ . ....+.. ..+.||
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~~n 201 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNELNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLIFN 201 (369)
T ss_pred eeccCceEEEecchhhccCccccccccchhcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccceec
Confidence 45689999999999999999998876432 1 111111111110000100 1111111 0 0112222 345599
Q ss_pred cceEEEecHHHHHhhHHHHHHHHHHH---cCCCCCCCcCCCChhhhccCCceeecCCccccccC-CC-CC-CCChh--hc
Q 008561 445 YGMNFFDLDAWRREKCTEEYHYWQNL---NENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGL-GY-NP-SISME--EI 516 (561)
Q Consensus 445 SGVmLiNL~kWR~~nitek~~~~l~~---~~~~~l~DQd~LN~~li~f~g~i~~Ld~~WN~~~l-gy-~~-~i~~e--~i 516 (561)
+|++++-... ..+..+... -......+||.+| ..|...-.+.++..|..-- .+ .+ ..... ..
T Consensus 202 ~~~~v~~ps~-------~~~~~~~~~~~~~~~~~~~~q~~l~---~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~ 271 (369)
T KOG1950|consen 202 SGLLVFEPSL-------CNYKDLMEFSEEFESYNGADQGFLH---LIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASS 271 (369)
T ss_pred cCccccCCCc-------cchhhHHHhhcccCCCCCccchhhH---HHhhcccCCCcccccccccccccCccccchhhccc
Confidence 9999985432 222223322 2233456999999 3443333377777776532 22 11 11111 11
Q ss_pred CCcEEEEccCCCCCccc
Q 008561 517 QNAAVVHFNGNMKPWLD 533 (561)
Q Consensus 517 ~~~~IIHy~G~~KPW~~ 533 (561)
..-..+||.|..|||..
T Consensus 272 ~~~~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 272 VLRYALHYLGANKPELC 288 (369)
T ss_pred ccchhhhccccCCCCcc
Confidence 22345699997677753
No 32
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=66.86 E-value=3 Score=45.28 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=23.6
Q ss_pred hhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhc
Q 008561 364 ILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 364 ~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
..+..|+.+=- +|+ =||||+||||.+++++|=+
T Consensus 227 lSdl~RLA~Ly---KYG-GvYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 227 LSDLSRLALLY---KYG-GVYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHH---HhC-CEEeeccEEEecccccccc
Confidence 35566766422 233 2899999999999999864
No 33
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=64.81 E-value=36 Score=36.61 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=66.0
Q ss_pred EEE-EcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhhh
Q 008561 253 YAI-FSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLE 331 (561)
Q Consensus 253 Iai-~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~le 331 (561)
|++ +++..-++.-+|.|++++.+.-+...++|..|+-..+..+..... . .. |..+.+ .+ .
T Consensus 4 Vlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~---~-~~--i~~i~~---~~--~-------- 64 (334)
T cd02514 4 VLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF---G-DG--VTHIQH---PP--I-------- 64 (334)
T ss_pred EEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh---c-cc--cEEEEc---cc--c--------
Confidence 444 444456899999999998533356889999999876544333221 1 01 111111 00 0
Q ss_pred hhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhccc--CCeEEEeecCeeEecCchhhh
Q 008561 332 SANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK--LHRILFLDDDIVVQRDLTGLW 399 (561)
Q Consensus 332 ~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~--ldKVLYLD~DvIV~~DLseLw 399 (561)
.+.+. +. ..++ ..|..+..+++.-+-.+|.. .++||+||+|+++--|.=+.+
T Consensus 65 -------~~~~~------~~-~~~~--~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 65 -------SIKNV------NP-PHKF--QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred -------ccccc------Cc-cccc--chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 00000 00 0011 13567778888888888864 899999999999999954433
No 34
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=45.18 E-value=1.9e+02 Score=24.40 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=29.9
Q ss_pred EcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhh
Q 008561 256 FSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKL 300 (561)
Q Consensus 256 ~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l 300 (561)
+.+....+.-++.|+..... ....+.|++++.+.+..+.+...
T Consensus 5 ~~~~~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~ 47 (156)
T cd00761 5 AYNEEPYLERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILEEY 47 (156)
T ss_pred ecCcHHHHHHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHHHH
Confidence 33344456788999988775 34778899998887766655544
No 35
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=45.06 E-value=1.4e+02 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------cchHHHHHHHHHHHHHHHH
Q 008561 148 ILRQFEKEVKERIKLTRQIIAEAKES-------FDNQLKIQKLKDTIFAVNE 192 (561)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~~~~kl~~~~~~~ee 192 (561)
++..+-.++...||.|.++|+++-+. |.-+..++.+|..|+.+|.
T Consensus 96 sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 96 SVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667888999999999988764 4444555555555555553
No 36
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.52 E-value=2.3e+02 Score=32.91 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008561 155 EVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQ 200 (561)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~~~ 200 (561)
++..+|+..++.|.++|.- ...|+--|.+++.+.+.++.+
T Consensus 111 ~~n~kiEelk~~i~~~q~e------L~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 111 EINTKIEELKRLIPQKQLE------LSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHH------HHHHHhHHHHHHHHHHHHHhh
Confidence 4556777777777766642 447777777777776655544
No 37
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=39.28 E-value=15 Score=32.01 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=28.1
Q ss_pred CCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCc-hhhh
Q 008561 360 KYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDL-TGLW 399 (561)
Q Consensus 360 ~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DL-seLw 399 (561)
.+.....++|+.+--.... ||+|.|+++.+++ +.+-
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 3455788999987666655 8999999999999 6553
No 38
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.17 E-value=2.1e+02 Score=28.58 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=38.2
Q ss_pred cCchh-HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 008561 143 TIDES-ILRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKK 199 (561)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee~~~~~~~ 199 (561)
.-||. +++++..+|++.+..+++.++++... ---......+...+...|+++..+-.
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677 78999999999999999998877642 11223344555555566666555444
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.15 E-value=4.1e+02 Score=33.53 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=15.6
Q ss_pred cCcCchhHHHHHHHHHHHHHHH
Q 008561 141 SLTIDESILRQFEKEVKERIKL 162 (561)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (561)
..+++|+.+.+|..++++++..
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVAS 1526 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 3588888888887777665543
No 40
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.11 E-value=2e+02 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 008561 149 LRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTK 196 (561)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~ 196 (561)
+++..+++++.|++++.-|.+-.. .+...+.||.-...+|.++..
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~---~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEE---IQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655542222 234555666666666666653
No 41
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.50 E-value=5.6e+02 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 008561 76 DPLKPRLDQIRKQADDHRALAMAYASYARKLK 107 (561)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~~ 107 (561)
+-+.+|++-+.|+-+.-+--.+||...-|.+.
T Consensus 12 ~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~ 43 (200)
T cd07637 12 VEIEAKLDKLVKLCSGMIEAGKAYATTNKLFV 43 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999766654
No 42
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=30.03 E-value=38 Score=34.32 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.5
Q ss_pred hhhhhcccCCeEEEeecCeeEecC
Q 008561 371 YLPEMYPKLHRILFLDDDIVVQRD 394 (561)
Q Consensus 371 ~iPeLlP~ldKVLYLD~DvIV~~D 394 (561)
.+..+||+++-||+||+||.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 357788999999999999998754
No 43
>PRK10132 hypothetical protein; Provisional
Probab=29.54 E-value=2.7e+02 Score=25.16 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008561 162 LTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQG 201 (561)
Q Consensus 162 ~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~ 201 (561)
+++..+..+++ .-|......+.|+....+++-++.+--++
T Consensus 49 r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~s 89 (108)
T PRK10132 49 KAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCS 89 (108)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45556666665 34444455677888888888887654443
No 44
>PRK04654 sec-independent translocase; Provisional
Probab=29.53 E-value=2.4e+02 Score=28.67 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 008561 144 IDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNE 192 (561)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee 192 (561)
++|+=++++.+.+-.-+++++..+..+|+-.+.......||..++..++
T Consensus 20 ~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~ 68 (214)
T PRK04654 20 LGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQA 68 (214)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555556666666666666666666666543333333344444444333
No 45
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.68 E-value=1e+03 Score=28.63 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=42.0
Q ss_pred cCchhHHHHHHHHHHHH---HHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccch
Q 008561 143 TIDESILRQFEKEVKER---IKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHC 218 (561)
Q Consensus 143 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hc 218 (561)
.+..+.-.++...+-+. +.+|.+.+..+++. -.-+....+|+.....++..++.+|++=...-+=. =+-+ .|
T Consensus 221 ~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~-C~~~---~C 296 (806)
T PF05478_consen 221 LLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDL-CTNR---EC 296 (806)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCh---hh
Confidence 34433334444333333 33333355555543 33345566888888888888887777654432221 2222 78
Q ss_pred hhhhhhH
Q 008561 219 LAMRLME 225 (561)
Q Consensus 219 l~~rL~~ 225 (561)
..++-..
T Consensus 297 ~~i~~~~ 303 (806)
T PF05478_consen 297 NSILSSL 303 (806)
T ss_pred HHHHHhc
Confidence 8875443
No 46
>PRK09039 hypothetical protein; Validated
Probab=28.64 E-value=4.7e+02 Score=28.13 Aligned_cols=9 Identities=11% Similarity=-0.208 Sum_probs=5.4
Q ss_pred CCCcccchh
Q 008561 10 GAPVTGRFT 18 (561)
Q Consensus 10 ~~~~~~~~~ 18 (561)
+.-.-||+-
T Consensus 13 ~~~wpg~vd 21 (343)
T PRK09039 13 VDYWPGFVD 21 (343)
T ss_pred CCCCchHHH
Confidence 444677776
No 47
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=28.16 E-value=6.5e+02 Score=25.57 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=34.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH-------H---HHHHHhhcc-hHHHHHHHHHHHHHHHHHHHH
Q 008561 143 TIDESILRQFEKEVKERIKLTRQ-------I---IAEAKESFD-NQLKIQKLKDTIFAVNEQLTK 196 (561)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~d-~~~~~~kl~~~~~~~ee~~~~ 196 (561)
+++++-+++|..++...+..... - |.-|++..| +.-+|+|+-.++..+|+++-.
T Consensus 101 ~~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ 165 (214)
T PRK11166 101 PIELADARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLM 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHH
Confidence 56666677766655554444332 2 233444455 345899999999999999863
No 48
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.15 E-value=5.5e+02 Score=24.75 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=43.6
Q ss_pred HHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHH-HHHHHHHHH
Q 008561 82 LDQIRKQADD-HRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILR-QFEKEVKER 159 (561)
Q Consensus 82 ~~~~~~~~~d-~~~~~~a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (561)
.|++.....+ |+-++..+......+...+ +.++.|.. .+=+++.+-++++.+. |+.+.++..
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~---------------~vd~~~~a~i~e~~L~~el~~~l~~~ 111 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQS---------------EVDSSSNAIIDEDFLESELKKKLNQL 111 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH---------------HHcccccccccHHHHHHHHHHHHHHH
Confidence 4677777777 7777777777666666544 44443332 1212234567777776 766655555
Q ss_pred HHHHHHHHHHHHh
Q 008561 160 IKLTRQIIAEAKE 172 (561)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (561)
...++.+......
T Consensus 112 ~~~~~~~~~~~~~ 124 (204)
T PF04740_consen 112 KEQIEDLQDEINS 124 (204)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555544443
No 49
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.32 E-value=2.8e+02 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.1
Q ss_pred hhcchH-HHHHHHHHHHHHHHHHHHHH
Q 008561 172 ESFDNQ-LKIQKLKDTIFAVNEQLTKA 197 (561)
Q Consensus 172 ~~~d~~-~~~~kl~~~~~~~ee~~~~~ 197 (561)
+-||.+ .+..++|+-|.++|.++...
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348875 58899999999999998754
No 50
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=26.20 E-value=3.7e+02 Score=28.88 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cch
Q 008561 98 AYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKES-FDN 176 (561)
Q Consensus 98 a~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ 176 (561)
|+..++-+|. +|++...+..+|++.-++...+ ..--+.++.+.+++|+.++.+|..- ++.
T Consensus 44 a~~~is~~l~----~~~~~L~q~~~n~~~g~s~lqt---------------ae~aL~~~~~~lqrirelavqaan~t~s~ 104 (360)
T COG1344 44 AGLAIALRLR----SQIRGLSQAKDNAQDGISKLQT---------------AEGALSEISKILQRIKELAVQAANGTLSD 104 (360)
T ss_pred HHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 5667777777 5666666777777755442222 2334667888999999999998863 443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008561 177 QLKIQKLKDTIFAVNEQLTKAKKQGAF 203 (561)
Q Consensus 177 ~~~~~kl~~~~~~~ee~~~~~~~~~~~ 203 (561)
... .++..-+..+-|++...-.+..|
T Consensus 105 ~dr-~~iq~Ei~~l~~el~~iantt~f 130 (360)
T COG1344 105 ADR-AAIQKEIEQLLDELDNIANTTSF 130 (360)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhcccC
Confidence 332 24555566677776644333333
No 51
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.45 E-value=6e+02 Score=25.39 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=56.9
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH--------HH-----HHHHHhhhhhhhhhcchhhhhhcccCcC
Q 008561 76 DPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSK--------LV-----RIFADLSRNYTDLITKPTYQALMQSDSL 142 (561)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~~~~~~~--------~~-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (561)
+.+++|++-+.|..+--+.=.+.|+..-+.+.-.+.. .+ -.+..++.-|+++.+ +..+|.+...
T Consensus 11 ~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~---~~~~L~~q~~ 87 (202)
T cd07606 11 DELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGS---YKEVLRSQVE 87 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3467788888887776555455554433332211111 11 134455555555533 3444444421
Q ss_pred cCchhHHHHHHHHHHH---HHHHHHHHHHHHHhhcchHH-HHHHH----H-HHHHHHHHHHHHHHH
Q 008561 143 TIDESILRQFEKEVKE---RIKLTRQIIAEAKESFDNQL-KIQKL----K-DTIFAVNEQLTKAKK 199 (561)
Q Consensus 143 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~-~~~kl----~-~~~~~~ee~~~~~~~ 199 (561)
. .....|.+.+++ .+|+.+.-..++.+.||.+. +-..| | ..+...|+++...|+
T Consensus 88 ~---~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~ 150 (202)
T cd07606 88 H---MLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRS 150 (202)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 1 122333333333 34455555666666677642 21122 1 355666777665554
No 52
>PRK15383 type III secretion system protein; Provisional
Probab=25.42 E-value=38 Score=35.06 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.7
Q ss_pred CeEEEeecCeeEecCchhhhccC
Q 008561 380 HRILFLDDDIVVQRDLTGLWKID 402 (561)
Q Consensus 380 dKVLYLD~DvIV~~DLseLw~lD 402 (561)
+-+||||+|||+.+-|--|+--|
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~PD 242 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYLPD 242 (335)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 34999999999999999988644
No 53
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=25.33 E-value=38 Score=35.02 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=28.2
Q ss_pred hhhhHHHh----hhhhcccC-----------CeEEEeecCeeEecCchhhhccC
Q 008561 364 ILNHLRFY----LPEMYPKL-----------HRILFLDDDIVVQRDLTGLWKID 402 (561)
Q Consensus 364 ~~~y~Rl~----iPeLlP~l-----------dKVLYLD~DvIV~~DLseLw~lD 402 (561)
.+.++|=+ -.++|-+. +-+||||+|||+.+-|--|+--|
T Consensus 181 wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PD 234 (326)
T PRK15382 181 WFDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPD 234 (326)
T ss_pred ehHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCC
Confidence 35566622 36666543 34999999999999999988644
No 54
>PRK15384 type III secretion system protein; Provisional
Probab=25.20 E-value=37 Score=35.14 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=28.5
Q ss_pred chhhhHHHh----hhhhcccC-----------CeEEEeecCeeEecCchhhhccC
Q 008561 363 SILNHLRFY----LPEMYPKL-----------HRILFLDDDIVVQRDLTGLWKID 402 (561)
Q Consensus 363 S~~~y~Rl~----iPeLlP~l-----------dKVLYLD~DvIV~~DLseLw~lD 402 (561)
..+.++|=+ -.++|-+. +-+||||+|||+.+-|--|+--|
T Consensus 185 ~wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PD 239 (336)
T PRK15384 185 GWFDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPD 239 (336)
T ss_pred chhHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCC
Confidence 345666622 35666543 34899999999999999988644
No 55
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=24.88 E-value=4.5e+02 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHH
Q 008561 261 LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQ 295 (561)
Q Consensus 261 laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~ 295 (561)
-.+.-++.|++..+. ....+.|+.|+.+.....
T Consensus 10 ~~l~~~l~sl~~q~~--~~~~iivvdd~s~d~t~~ 42 (180)
T cd06423 10 AVIERTIESLLALDY--PKLEVIVVDDGSTDDTLE 42 (180)
T ss_pred HHHHHHHHHHHhCCC--CceEEEEEeCCCccchHH
Confidence 456778899998765 357888888877755443
No 56
>PRK01919 tatB sec-independent translocase; Provisional
Probab=24.09 E-value=3.5e+02 Score=26.57 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=37.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Q 008561 143 TIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLT 195 (561)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~ 195 (561)
-++|+-++++.+.+-.-+++++.++..+|+-.+-..-...|+.+...+|+.++
T Consensus 19 V~GPekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e~dElrk~~~~~e~~~~ 71 (169)
T PRK01919 19 VIGPERLPRVARTAGALFGRAQRYINDVKAEVSREIELDELRKMKTDFESAAR 71 (169)
T ss_pred eeCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46778788888888888999999999888765555444566666555554433
No 57
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.92 E-value=5.3e+02 Score=25.64 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=20.5
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHh
Q 008561 76 DPLKPRLDQIRKQADDHRALAMAYASYARK 105 (561)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~ 105 (561)
+.+..|++-+.|.-+--+...++|+..-+.
T Consensus 12 ~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~ 41 (200)
T cd07603 12 SELETRLEKLLKLCNGMVDSGKTYVNANSL 41 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888877777777777664443
No 58
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.67 E-value=4.2e+02 Score=26.12 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHhhhhhhhhhcchhhhhhcccCcCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHH
Q 008561 115 RIFADLSRNYTDLITKPTYQALMQSDSLTIDE-SILRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNE 192 (561)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee 192 (561)
|.+..+..++.+++.+. -|| ..+.|...+|++.+..++..++.+... ---......+...+...++
T Consensus 5 Rl~~~~~a~~~~~ld~~------------EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 5 RLKTLVKANINELLDKA------------EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHhh------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666776665522 233 355888888888888888888776653 1222333444445555555
Q ss_pred HHHHHH
Q 008561 193 QLTKAK 198 (561)
Q Consensus 193 ~~~~~~ 198 (561)
++..+-
T Consensus 73 ~A~~Al 78 (221)
T PF04012_consen 73 QAELAL 78 (221)
T ss_pred HHHHHH
Confidence 554443
No 59
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=23.66 E-value=3.9e+02 Score=22.80 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=23.1
Q ss_pred hhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008561 127 LITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKE 172 (561)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (561)
|+.-|..=+-+.+++...+..++..|.+-.+..-..++.++..+++
T Consensus 26 Ll~lP~~i~~~v~~g~~~~~~a~~~L~~~~~~~~~~~~~~v~~~~~ 71 (93)
T PF08535_consen 26 LLDLPEEIKELVRSGRISDIRALYELRKLAEKNPEEVEALVAKAKE 71 (93)
T ss_dssp GGS--HHHHHHHHTTS---HHHHHHHHHHHHH-HHHHHHHH-HSTT
T ss_pred HHcCCHHHHHHHHcCCCchHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 4444444344444544445666677777777777777777744443
No 60
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=23.39 E-value=1.7e+02 Score=30.91 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHh--hccCCcccchhhhhhhHH
Q 008561 150 RQFEKEVKERIKLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIA--AKSIPKSLHCLAMRLMEE 226 (561)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la--~~~~Pk~~hcl~~rL~~e 226 (561)
.+..+-+++.+.++|+++..=+. ..+.......++..+...+++.... ...... ...+|+...=-.+|...|
T Consensus 212 ~~i~~~~~e~l~evR~~v~~Lrp~~l~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~e~~l~rivQE 286 (365)
T COG4585 212 KEIEKLLREALQEVRALVRDLRPVELEGLGLVEALRALLADFEERTGIT-----VDLSLGSELERLPPEAEDALFRIVQE 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhcchHHHHHHHHHHHHHhhcCeE-----EEEecCcccccCChhHHHHHHHHHHH
Confidence 44444455555555555554443 2344444445555554444443211 000000 112567777777888888
Q ss_pred HhcCcccCC
Q 008561 227 RIAHPEKYN 235 (561)
Q Consensus 227 ~~~~~~~~~ 235 (561)
-.+|.-.|.
T Consensus 287 altN~~rHa 295 (365)
T COG4585 287 ALTNAIRHA 295 (365)
T ss_pred HHHHHHhcc
Confidence 888766555
No 61
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.14 E-value=2.9e+02 Score=25.30 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhhh
Q 008561 174 FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRL 223 (561)
Q Consensus 174 ~d~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rL 223 (561)
|-...-..-||..|..+||+.....+....|..+++ |..|--+...|
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s---pe~L~ql~~~~ 109 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSLLKTLAS---PEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---HHHHHHHHHhc
Confidence 555555778999999999999999999999999887 55554443333
No 62
>PRK10698 phage shock protein PspA; Provisional
Probab=22.24 E-value=5.7e+02 Score=25.76 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHhhhhhhhhhcchhhhhhcccCcCcCchh-HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHH
Q 008561 115 RIFADLSRNYTDLITKPTYQALMQSDSLTIDES-ILRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNE 192 (561)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee 192 (561)
|...-+..|+.+++. ..-||. +++++..+|++.+..+++.++++... --.......+...+...|+
T Consensus 6 Rl~~ii~a~in~~ld------------kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 6 RFADIVNANINALLE------------KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHhHHHHHHH------------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666654 244677 78999999999999998888766542 1112223334444444455
Q ss_pred HHHHHHH
Q 008561 193 QLTKAKK 199 (561)
Q Consensus 193 ~~~~~~~ 199 (561)
++..+-.
T Consensus 74 kA~~Al~ 80 (222)
T PRK10698 74 KAELALR 80 (222)
T ss_pred HHHHHHH
Confidence 5444433
No 63
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=22.19 E-value=5.2e+02 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=23.5
Q ss_pred CCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHH
Q 008561 258 DNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQ 295 (561)
Q Consensus 258 DNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~ 295 (561)
+..-.+.-++.|+..... ....+.|+.|+.+.+..+
T Consensus 8 n~~~~l~~~l~sl~~q~~--~~~eiivvdd~s~d~~~~ 43 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTD--PDFEIIVVDDGSTDETEE 43 (169)
T ss_dssp S-TTTHHHHHHHHHHHSG--CEEEEEEEECS-SSSHHH
T ss_pred CCHHHHHHHHHHHhhccC--CCEEEEEecccccccccc
Confidence 334557788999998843 457888888877554433
No 64
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.03 E-value=3.3e+02 Score=23.08 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Q 008561 149 LRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQ 193 (561)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~ee~ 193 (561)
..++.+++.+..+.+..++.++++. -|.+.+.+++..+..+.++=
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777888888877774 56666667777666665543
No 65
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.76 E-value=8.9e+02 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 008561 80 PRLDQIRKQADDHRALAMAYASYARKLK 107 (561)
Q Consensus 80 ~~~~~~~~~~~d~~~~~~a~~~~~~~~~ 107 (561)
.+++.+.++|..++.=++-|+. |++..
T Consensus 46 ~kL~~~~kkLg~~I~karPYye-a~~~a 72 (239)
T PF05276_consen 46 KKLNELAKKLGSCIEKARPYYE-ARRKA 72 (239)
T ss_pred HHHHHHHHHHHHHHHHhchHHH-HHHHH
Confidence 5899999999999999999999 65543
No 66
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.50 E-value=4.8e+02 Score=21.84 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008561 156 VKERIKLTRQIIAEAKE----SFDNQLKIQKLKDTIFAVNEQLTKAKKQ 200 (561)
Q Consensus 156 ~~~~~~~~~~~~~~~~~----~~d~~~~~~kl~~~~~~~ee~~~~~~~~ 200 (561)
++++=..+.++...... -.--.+.++|||+.+..+|.++...+++
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444443332 1334567889999999999998766543
No 67
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.45 E-value=21 Score=32.42 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHHHHHHHHhhhhhhhh
Q 008561 102 YARKLKLENSKLVRIFADLSRNYTDL 127 (561)
Q Consensus 102 ~~~~~~~~~~~~~r~~~~~~~~~~~~ 127 (561)
+..+...|+++|+|.|...|..+.+-
T Consensus 23 iin~W~~eLe~q~k~F~~qA~~V~~w 48 (116)
T PF05064_consen 23 IINKWNKELEEQEKEFNEQATQVNAW 48 (116)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999988888755
No 68
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.35 E-value=46 Score=35.75 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=18.4
Q ss_pred cCCCCCCccccceEEEecHHHHHh
Q 008561 435 KFNPKACAWAYGMNFFDLDAWRRE 458 (561)
Q Consensus 435 ~f~~~~~yfNSGVmLiNL~kWR~~ 458 (561)
.+..+.+||||||.+|....+.++
T Consensus 186 yv~sG~y~WNSGmF~Fra~~~l~e 209 (333)
T COG0836 186 YVESGEYLWNSGMFLFRASVFLEE 209 (333)
T ss_pred HHHcCceEeeccceEEEHHHHHHH
Confidence 445667899999999987766553
No 69
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=4.5e+02 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 008561 176 NQLKIQKLKDTIFAVNEQLTKAKKQGAFSSL 206 (561)
Q Consensus 176 ~~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~ 206 (561)
-+.-.+||++|++.+|+|+....++...|..
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455779999999999999988888877643
No 70
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.05 E-value=1.7e+02 Score=29.03 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.4
Q ss_pred cCCeEEEeecCeeEecC-chhhhc
Q 008561 378 KLHRILFLDDDIVVQRD-LTGLWK 400 (561)
Q Consensus 378 ~ldKVLYLD~DvIV~~D-LseLw~ 400 (561)
..+-|+++|+|+++..| |..++.
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHH
Confidence 46899999999999988 566765
Done!