Query 008561
Match_columns 561
No_of_seqs 320 out of 1290
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 5.5E-47 1.9E-51 384.5 16.1 256 250-554 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.3E-42 1.5E-46 353.0 16.4 249 251-547 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 7E-27 2.4E-31 243.2 14.1 227 249-550 3-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 4.6E-25 1.6E-29 222.9 12.0 208 254-535 9-225 (263)
5 1fo8_A Alpha-1,3-mannosyl-glyc 45.8 86 0.003 32.2 9.8 40 361-400 80-121 (343)
6 1o7q_A N-acetyllactosaminide a 43.6 72 0.0025 32.3 8.5 124 372-504 132-262 (289)
7 1kmi_Z CHEZ, chemotaxis protei 30.5 2.9E+02 0.0099 26.4 10.2 54 142-195 100-164 (214)
8 3ioh_A Histo-blood group ABO s 26.3 2.6E+02 0.0089 28.4 9.2 123 373-504 142-271 (298)
9 3v1a_A Computational design, M 25.2 1.1E+02 0.0039 22.8 4.7 37 89-125 6-44 (48)
10 2l3l_A Tubulin-specific chaper 24.0 1.8E+02 0.006 25.2 6.6 42 153-194 60-107 (111)
11 3v47_C Flagellin; innate immun 21.6 1.5E+02 0.0051 31.6 6.8 85 99-203 6-91 (425)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=5.5e-47 Score=384.48 Aligned_cols=256 Identities=16% Similarity=0.188 Sum_probs=193.6
Q ss_pred eeEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHH
Q 008561 250 LYHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (561)
Q Consensus 250 ~iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl 327 (561)
.+|||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+..+.+..+....+.+|+++.+++ +++
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~-------- 74 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLF-------- 74 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHH--------
Confidence 4899999995 5 5799999999999986 68999999999999888877776666677888776643 111
Q ss_pred HhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcc-cCCeEEEeecCeeEecCchhhhccCCCCC
Q 008561 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYP-KLHRILFLDDDIVVQRDLTGLWKIDMDGK 406 (561)
Q Consensus 328 ~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP-~ldKVLYLD~DvIV~~DLseLw~lDL~gk 406 (561)
.+ ++..+++|..+|+||++|+++| +++||||||+|+||++||++||++|++|+
T Consensus 75 -------------~~-------------~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~ 128 (276)
T 3tzt_A 75 -------------SF-------------AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDY 128 (276)
T ss_dssp -----------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTS
T ss_pred -------------hc-------------CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCC
Confidence 10 0112457899999999999999 59999999999999999999999999999
Q ss_pred EEEEEecCccC-ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCCh
Q 008561 407 VNGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPP 484 (561)
Q Consensus 407 viaAV~d~~~~-~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~ 484 (561)
++|||+||... +.+.... .++++..||||||||||||++||+.++++++.+|++.+.. ..+.|||+||
T Consensus 129 ~~aav~d~~~~~~~~~~~~---------~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN- 198 (276)
T 3tzt_A 129 ILAAASHTGKTDMANNVNR---------IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN- 198 (276)
T ss_dssp SEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH-
T ss_pred eEEEEEecccchHHHHHHH---------hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHH-
Confidence 99999999753 1111111 1344446999999999999999999999999999987653 3567999999
Q ss_pred hhhccCCceeecCC-ccccccCCCCC--------CCC-hhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChhhH
Q 008561 485 GLITFYSTTKPLDK-SWHVLGLGYNP--------SIS-MEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLDFI 554 (561)
Q Consensus 485 ~li~f~g~i~~Ld~-~WN~~~lgy~~--------~i~-~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~~l 554 (561)
++|.|+|++||. +||++.. +.. ..+ .+..++|+||||+|+.|||...+.++|+++||+|.+...++|
T Consensus 199 --~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 199 --AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp --HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred --HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 699999999998 9999873 210 111 124678999999999999999999999999999999988876
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=4.3e-42 Score=352.96 Aligned_cols=249 Identities=20% Similarity=0.258 Sum_probs=194.7
Q ss_pred eEEEEEcCC-c-chhHHHHHHH-HHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHH
Q 008561 251 YHYAIFSDN-V-LAASVVVNSA-VKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (561)
Q Consensus 251 iHIai~sDN-v-laasVvI~Si-l~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl 327 (561)
+|||+++|+ + .+++|+++|+ +.|++ .+++|||++++++.+..+.+..+....+.+|+++.+++- .
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~--------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-D--------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-G---------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-H---------
Confidence 699999995 5 5799999999 88875 569999999999998887777665555667776655420 0
Q ss_pred HhhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCE
Q 008561 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKV 407 (561)
Q Consensus 328 ~~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkv 407 (561)
|.+ .. .+.+++|..+|+||++|++||+++||||||+|+||++||++||++|++|++
T Consensus 69 ------------~~~-----------~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~ 124 (311)
T 1g9r_A 69 ------------FAG-----------FP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNW 124 (311)
T ss_dssp ------------GTT-----------SC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCS
T ss_pred ------------Hhc-----------Cc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcE
Confidence 100 00 013568899999999999999999999999999999999999999999999
Q ss_pred EEEEecCccC-ccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChh
Q 008561 408 NGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPG 485 (561)
Q Consensus 408 iaAV~d~~~~-~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~ 485 (561)
+|||+||... ...+...+ ++.+..|||||||||||+++||+.++++++.+|++.+.. ..+.|||+||
T Consensus 125 ~aav~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN-- 193 (311)
T 1g9r_A 125 LGASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN-- 193 (311)
T ss_dssp EEEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHH--
T ss_pred EEEEeccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHH--
Confidence 9999998642 11122222 233467899999999999999999999999999877654 3556999999
Q ss_pred hhccCCceeecCCccccccCCCC---C---CC--C------hhhcCCcEEEEccCCCCCccccccCCCHHHHHHHh
Q 008561 486 LITFYSTTKPLDKSWHVLGLGYN---P---SI--S------MEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYV 547 (561)
Q Consensus 486 li~f~g~i~~Ld~~WN~~~lgy~---~---~i--~------~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~ 547 (561)
++|.++|+.||.+||++..++. . .. . .+..++++||||+|+.|||...+.++..++|..+.
T Consensus 194 -~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 194 -GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp -HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred -HHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 6899999999999999863211 0 00 0 11235789999999999999998888888777766
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=7e-27 Score=243.17 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=157.2
Q ss_pred ceeEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhH
Q 008561 249 KLYHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPV 326 (561)
Q Consensus 249 ~~iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pv 326 (561)
+..+|++++|. + .++.|++.|+..|+++ .+++| +++++++.+..+.+.... . .|+.++. +.... +
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~---l~~~~-~- 69 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDI---LDSGD-S- 69 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCT---TSTTS-T-
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEee---cCCcc-h-
Confidence 34678888874 5 5799999999999876 56666 778899988777766542 1 2333321 11000 0
Q ss_pred HHhhhhhhhhhhhhhcccccccccccccc-cCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCC
Q 008561 327 LRQLESANLQRFYFENKLENATKDTTNMK-FRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDG 405 (561)
Q Consensus 327 l~~le~~~~~~~~F~~~~~~~~~~~~~l~-~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~g 405 (561)
. ++. ..++ ....+|+||++|++ ++++||||||+|+||.+||++||+++
T Consensus 70 ------~-------------------~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~--- 118 (333)
T 1ll2_A 70 ------A-------------------HLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE--- 118 (333)
T ss_dssp ------T-------------------HHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC---
T ss_pred ------h-------------------hccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC---
Confidence 0 000 0111 23589999999996 78999999999999999999999987
Q ss_pred CEEEEEecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChh
Q 008561 406 KVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPG 485 (561)
Q Consensus 406 kviaAV~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~ 485 (561)
.+|||+|.+ | .+||||||||||++. +..+++.++++.+......|||+||
T Consensus 119 -~~aAv~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~~~~~DQ~~LN-- 168 (333)
T 1ll2_A 119 -ELSAAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQGSFDGGDQGLLN-- 168 (333)
T ss_dssp -SSEEEECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTCCTTSSHHHHHH--
T ss_pred -ceeEEecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcCCCCCCCHHHHH--
Confidence 477887742 1 258999999999863 3445666666655556678999999
Q ss_pred hhccCCce-----eecCCccccccCC-CCCCCC-hhhcCCcEEEEccCCCCCccccccC-----------------CCHH
Q 008561 486 LITFYSTT-----KPLDKSWHVLGLG-YNPSIS-MEEIQNAAVVHFNGNMKPWLDIAMN-----------------QFKP 541 (561)
Q Consensus 486 li~f~g~i-----~~Ld~~WN~~~lg-y~~~i~-~e~i~~~~IIHy~G~~KPW~~~~~~-----------------~y~~ 541 (561)
.+|.+.+ +.||.+||++... |...-. ....++++||||+|..|||...+.+ ++.+
T Consensus 169 -~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (333)
T 1ll2_A 169 -TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLN 247 (333)
T ss_dssp -HHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHH
T ss_pred -HHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHH
Confidence 4776543 7999999998642 211000 1235789999999999999876443 3456
Q ss_pred HHHHHhcCC
Q 008561 542 LWTKYVDYD 550 (561)
Q Consensus 542 lW~kY~~~~ 550 (561)
.||.+++..
T Consensus 248 ~WW~~~~~~ 256 (333)
T 1ll2_A 248 VWWDIFTTS 256 (333)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 788877633
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=4.6e-25 Score=222.87 Aligned_cols=208 Identities=18% Similarity=0.182 Sum_probs=144.8
Q ss_pred EEEcC-Cc-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhhh
Q 008561 254 AIFSD-NV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLE 331 (561)
Q Consensus 254 ai~sD-Nv-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~le 331 (561)
.+++| ++ .++.|++.|+..+++. .++++ +++++++.+..+.+.... . +|+.++. ++.. .+. .+
T Consensus 9 Tl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~~----~--~vi~V~~---l~~~-~~~--~~- 73 (263)
T 3u2u_A 9 TLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETVF----D--EVIMVDV---LDSG-DSA--HL- 73 (263)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHS----S--EEEECCC---CCCC-CHH--HH-
T ss_pred EEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHcC----C--eEEEeee---cCCc-chh--hh-
Confidence 34556 45 5799999999998875 45554 678889988777665542 2 2333321 1100 000 00
Q ss_pred hhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEE
Q 008561 332 SANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAV 411 (561)
Q Consensus 332 ~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV 411 (561)
. .+.+|. + ..+|.|++++++.+ ++||||||+|++|.+||++||++| .+|||
T Consensus 74 ---------~-------------~~~rp~-~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~ 124 (263)
T 3u2u_A 74 ---------T-------------LMKRPE-L-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAA 124 (263)
T ss_dssp ---------H-------------HTTCTT-G-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEE
T ss_pred ---------h-------------hhcCcc-h-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEe
Confidence 0 001222 2 36899999999875 899999999999999999999987 47788
Q ss_pred ecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChhhhccCC
Q 008561 412 ETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYS 491 (561)
Q Consensus 412 ~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~li~f~g 491 (561)
+|.+ + ..||||||||||++. ++.+++.++++........|||+|| .+|.+
T Consensus 125 ~d~~-----------~------------~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~~~~~DQd~LN---~~f~~ 174 (263)
T 3u2u_A 125 PDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHLASEQGSFDGGDQGILN---TFFSS 174 (263)
T ss_dssp ECTT-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHHCCTTSSHHHHHH---HHTTT
T ss_pred ccCC-----------C------------CccccCeEEEEcccH----HHHHHHHHHHHhcCCCCcccHHHHH---HHhcc
Confidence 7742 1 148999999999863 5667777776665566778999999 57877
Q ss_pred -----ceeecCCccccccC-CCCCCCC-hhhcCCcEEEEccCCCCCccccc
Q 008561 492 -----TTKPLDKSWHVLGL-GYNPSIS-MEEIQNAAVVHFNGNMKPWLDIA 535 (561)
Q Consensus 492 -----~i~~Ld~~WN~~~l-gy~~~i~-~e~i~~~~IIHy~G~~KPW~~~~ 535 (561)
.++.||.+||++.. .|..... .+..++++||||+|..|||...+
T Consensus 175 w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~ 225 (263)
T 3u2u_A 175 WATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTY 225 (263)
T ss_dssp TTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEE
T ss_pred ccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCC
Confidence 78999999999852 2221000 12357899999999999998754
No 5
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=45.79 E-value=86 Score=32.17 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=30.7
Q ss_pred CcchhhhHHHhhhhhcc--cCCeEEEeecCeeEecCchhhhc
Q 008561 361 YLSILNHLRFYLPEMYP--KLHRILFLDDDIVVQRDLTGLWK 400 (561)
Q Consensus 361 y~S~~~y~Rl~iPeLlP--~ldKVLYLD~DvIV~~DLseLw~ 400 (561)
|..+..+++--+-.+|. ..++||+||+|+++-.|.=+.++
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 34456677777777777 68999999999999999754443
No 6
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=43.61 E-value=72 Score=32.26 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=74.8
Q ss_pred hhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCC-Cchhhhc--cCCCCCCccccceE
Q 008561 372 LPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNF-SHPLIKA--KFNPKACAWAYGMN 448 (561)
Q Consensus 372 iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnf-s~p~i~~--~f~~~~~yfNSGVm 448 (561)
..+++.++|-+.++|+|+++++++..= .| |..+|...-..-. +-.....+ .+|.=.. .++.+..|+.+|++
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~--~~~~~fpYERrp~S~AyIp~~eGdfYY~Ga~f 205 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYK--ADPNDFTYERRKESAAYIPFGEGDFYYHAAIF 205 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTT--SCGGGSCCCCCTTSTTCCCTTCCSCCEEEEEE
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhC--CCCCCCCCCCCcCceeeecCCCCCEEEEceee
Confidence 355677899999999999999998541 12 4566666543211 00000001 1121011 35678899999988
Q ss_pred EEecHHHHHhhHHHHHHHHHH---HcCCCCCC-CcCCCChhhhccCCceeecCCcccccc
Q 008561 449 FFDLDAWRREKCTEEYHYWQN---LNENRTLW-KLGTLPPGLITFYSTTKPLDKSWHVLG 504 (561)
Q Consensus 449 LiNL~kWR~~nitek~~~~l~---~~~~~~l~-DQd~LN~~li~f~g~i~~Ld~~WN~~~ 504 (561)
==-..+-. ++++.|++-+. .++-...| |..-||-.+ .....++.|++.|+...
T Consensus 206 GGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd~ 262 (289)
T 1o7q_A 206 GGTPTQVL--NITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWDY 262 (289)
T ss_dssp EECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBCG
T ss_pred CCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCCc
Confidence 55444433 36777766542 23333455 788899743 34566788999998764
No 7
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=30.54 E-value=2.9e+02 Score=26.41 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=33.4
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHH----------HHHHHhhcch-HHHHHHHHHHHHHHHHHHH
Q 008561 142 LTIDESILRQFEKEVKERIKLTRQI----------IAEAKESFDN-QLKIQKLKDTIFAVNEQLT 195 (561)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~d~-~~~~~kl~~~~~~~ee~~~ 195 (561)
++++++.++++..+.+..+...... |.-|.+.-|- .-+|+|.-.++..+|+++.
T Consensus 100 ~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~ 164 (214)
T 1kmi_Z 100 DPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLL 164 (214)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777765555544444222 2333333452 3578888889999999876
No 8
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=26.27 E-value=2.6e+02 Score=28.36 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=69.4
Q ss_pred hhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCC-Cchhhhc--cCCCCCCccccceEE
Q 008561 373 PEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNF-SHPLIKA--KFNPKACAWAYGMNF 449 (561)
Q Consensus 373 PeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnf-s~p~i~~--~f~~~~~yfNSGVmL 449 (561)
..++-++|-+.++|+|+++++++..= .| |..+|...-..- ..-...+.+ .+|.=.. .++.+..|+.+|++=
T Consensus 142 ~~~~~EvDyLfc~dvd~~F~~~vG~E---~L-g~lva~lHp~~y--~~~~~~FpYERrp~S~AyIp~~eGdfYY~ga~fG 215 (298)
T 3ioh_A 142 RRFLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFY--GSSREAFTYERRPQSQAYIPKDEGDFYYGGAFFG 215 (298)
T ss_dssp HTHHHHCSEEEEEESSEEECSCBCGG---GC-SSEEEEBCTTTT--TSCGGGSCCCCCTTSTTCCCTTCCSCCBCTTEEE
T ss_pred HHHhhcCCEEEEecCCCeeccCccHH---Hh-HhhHhhcChhhh--cCCcccCcccCCccccccccCCCCCeEEeeeecC
Confidence 34666899999999999999987531 01 334555433210 000001111 1121011 245677888888874
Q ss_pred EecHHHHHhhHHHHHHHHH---HHcCCCCCC-CcCCCChhhhccCCceeecCCcccccc
Q 008561 450 FDLDAWRREKCTEEYHYWQ---NLNENRTLW-KLGTLPPGLITFYSTTKPLDKSWHVLG 504 (561)
Q Consensus 450 iNL~kWR~~nitek~~~~l---~~~~~~~l~-DQd~LN~~li~f~g~i~~Ld~~WN~~~ 504 (561)
=-..+-. ++++.|++-+ ..++-...| |..-||-.+ ..+..++.|++.|++..
T Consensus 216 Gt~~~vl--~Lt~~C~~~i~~D~~n~IeA~WhDESHLNKYf-l~hKPtKvLSPEY~Wd~ 271 (298)
T 3ioh_A 216 GSVQEVQ--RLTRACHQAMMVDQANGIEAVWHDESHLNKYL-LRHKPTKVLSPEYLWDQ 271 (298)
T ss_dssp EEHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBCH
T ss_pred CcHHHHH--HHHHHHHHHHHHHHhCCceEeccchhhhhhhh-hhcCCCceeCHHHcCCc
Confidence 3333322 3667776654 223334556 788899743 34566899999997653
No 9
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=25.21 E-value=1.1e+02 Score=22.81 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHhhhhhh
Q 008561 89 ADDHRALAMAYASYARKLK--LENSKLVRIFADLSRNYT 125 (561)
Q Consensus 89 ~~d~~~~~~a~~~~~~~~~--~~~~~~~r~~~~~~~~~~ 125 (561)
|.+|+++.+.|...||+-. -|.+.+.||..+|.+++.
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998721 244555555555555444
No 10
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=23.98 E-value=1.8e+02 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcch---HHHHHHHHHHHHHHHHHH
Q 008561 153 EKEVKERIKLTRQIIAEAKE---SFDN---QLKIQKLKDTIFAVNEQL 194 (561)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~---~~d~---~~~~~kl~~~~~~~ee~~ 194 (561)
..++...|..|...+..|-. .||. +..++.|++.+..+..++
T Consensus 60 ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 60 LEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577799999999999887 3994 566667776665555443
No 11
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=21.64 E-value=1.5e+02 Score=31.58 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhcchhhhhhcccCcCcCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchH
Q 008561 99 YASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKE-SFDNQ 177 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 177 (561)
..+|+-+|. +|+|...+..+|+++-++-.. +.+--..++.+.+.+|+.+..+|.. .+...
T Consensus 6 GlAIa~~lr----sqi~gl~Qa~rN~~dgiS~lq---------------tAEgAL~~i~~iLqRmRELaVQAaNgT~s~~ 66 (425)
T 3v47_C 6 PQAIANRFT----SNIKGLTQASRNANDGISIAQ---------------TTEGALNEINNNLQRVRELSVQATNGTNSDS 66 (425)
T ss_dssp ----------------------CHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 556677776 778888888888886654111 2233456788899999999998886 35433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008561 178 LKIQKLKDTIFAVNEQLTKAKKQGAF 203 (561)
Q Consensus 178 ~~~~kl~~~~~~~ee~~~~~~~~~~~ 203 (561)
. -..+.+-+..+-+|+...-.+..|
T Consensus 67 D-R~aIq~Ei~qL~~eI~~Ian~T~f 91 (425)
T 3v47_C 67 D-LKSIQDEIQQRLEEIDRVSNQTQF 91 (425)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhCCc
Confidence 2 224444555555665544333333
Done!