Query 008561
Match_columns 561
No_of_seqs 320 out of 1290
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 06:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 100.0 9.1E-44 6.6E-48 355.5 17.1 255 251-552 1-273 (282)
2 d1ll2a_ c.68.1.14 (A:) Glycoge 99.9 4E-26 2.9E-30 224.8 9.8 211 253-534 7-223 (263)
3 d1o7qa_ c.68.1.9 (A:) alpha-1, 91.2 1.8 0.00013 41.5 14.6 152 362-529 114-278 (287)
4 d1lzia_ c.68.1.9 (A:) Glycosyl 89.8 3.1 0.00023 39.7 14.8 137 373-523 136-281 (283)
5 d1fo8a_ c.68.1.10 (A:) N-acety 78.2 3.1 0.00023 40.8 8.9 118 250-401 3-122 (343)
6 d1s4na_ c.68.1.16 (A:) Glycoli 22.1 3.1E+02 0.022 25.8 13.5 225 253-497 22-279 (339)
7 d1iapa_ a.91.1.1 (A:) p115RhoG 18.3 6.7 0.00049 35.2 -1.7 37 262-299 15-54 (190)
8 d1tqga_ a.24.10.3 (A:) Chemota 12.7 2.1E+02 0.015 21.4 6.5 28 146-173 4-31 (105)
9 d1xhba2 c.68.1.17 (A:95-422) P 11.8 4.4E+02 0.032 22.9 10.7 45 250-294 23-69 (328)
10 d2gyqa1 a.25.1.4 (A:1-160) Hyp 11.2 4E+02 0.029 22.0 10.4 46 177-227 43-89 (160)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=100.00 E-value=9.1e-44 Score=355.53 Aligned_cols=255 Identities=19% Similarity=0.240 Sum_probs=204.3
Q ss_pred eEEEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHH
Q 008561 251 YHYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLR 328 (561)
Q Consensus 251 iHIai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~ 328 (561)
+|||+++|+ + .+++|+|+|++.++++ .+++|||++++++.+..+.+.......++.|.++.+++-.+
T Consensus 1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~---------- 69 (282)
T d1ga8a_ 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDF---------- 69 (282)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGG----------
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHh----------
Confidence 689999994 5 5799999999999876 68999999999999988888776655677777766542111
Q ss_pred hhhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEE
Q 008561 329 QLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVN 408 (561)
Q Consensus 329 ~le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkvi 408 (561)
.. .. ...+++|.++|+||++|++||+++||||||+||||++||++||++|++++.+
T Consensus 70 ------------~~-----------~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~ 125 (282)
T d1ga8a_ 70 ------------AG-----------FP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWL 125 (282)
T ss_dssp ------------TT-----------SC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSE
T ss_pred ------------cc-----------cc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhccccccee
Confidence 10 00 1235689999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCc-cchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCC-CCCCCcCCCChhh
Q 008561 409 GAVETCFGSF-HRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNEN-RTLWKLGTLPPGL 486 (561)
Q Consensus 409 aAV~d~~~~~-~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~-~~l~DQd~LN~~l 486 (561)
|||.|+.... ..+...+ ++.++.+||||||||||+++||+.++++++.++++.+.. ..++|||+||
T Consensus 126 aa~~d~~~~~~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--- 193 (282)
T d1ga8a_ 126 GASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN--- 193 (282)
T ss_dssp EEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHH---
T ss_pred eeehhhhhhhhhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhHHH---
Confidence 9999975321 1122222 344578999999999999999999999999999877643 4678999999
Q ss_pred hccCCceeecCCccccccCCCCCC--------CC------hhhcCCcEEEEccCCCCCccccccCCCHHHHHHHhcCChh
Q 008561 487 ITFYSTTKPLDKSWHVLGLGYNPS--------IS------MEEIQNAAVVHFNGNMKPWLDIAMNQFKPLWTKYVDYDLD 552 (561)
Q Consensus 487 i~f~g~i~~Ld~~WN~~~lgy~~~--------i~------~e~i~~~~IIHy~G~~KPW~~~~~~~y~~lW~kY~~~~~~ 552 (561)
++|.|++..||.+||++..+|... .. .+...+++||||+|+.|||...+.+++.+.|++|....+.
T Consensus 194 ~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~~~ 273 (282)
T d1ga8a_ 194 GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTT 273 (282)
T ss_dssp HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTCSC
T ss_pred HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhhhc
Confidence 689999999999999986432110 00 1235789999999999999999989999999999887654
No 2
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=99.92 E-value=4e-26 Score=224.76 Aligned_cols=211 Identities=14% Similarity=0.062 Sum_probs=141.3
Q ss_pred EEEEcC-Cc-chhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHhh
Q 008561 253 YAIFSD-NV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (561)
Q Consensus 253 Iai~sD-Nv-laasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~l 330 (561)
+.+++| ++ .++.|++.|+.++++. .++ +.+++++++.+..+.+..... +++.++..+.-+ +
T Consensus 7 vt~~t~d~Yl~~a~vl~~SL~~~~~~-~~~-vvl~~~~i~~~~~~~L~~~~~------~~~~v~~i~~~~----~----- 69 (263)
T d1ll2a_ 7 VTLTTNDAYAKGALVLGSSLKQHRTS-RRL-AVLTTPQVSDTMRKALEIVFD------EVITVDILDSGD----S----- 69 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEE-EEEECTTSCHHHHHHHHHHCS------EEEECCTTSTTS----T-----
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHCCC-CCE-EEEECCCCCHHHHHHHHHhCC------cceeEEeecCcc----h-----
Confidence 456666 55 5799999999998764 233 334578899888877766531 233332111100 0
Q ss_pred hhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEE
Q 008561 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGA 410 (561)
Q Consensus 331 e~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaA 410 (561)
+ ..... ...++..+|+||++++ +++++||||||+|+||++||++||+.|. ++|
T Consensus 70 ---------~------------~~~~~-~~~~~~~ty~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~~~~----~~a 122 (263)
T d1ll2a_ 70 ---------A------------HLTLM-KRPELGVTLTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFEREE----LSA 122 (263)
T ss_dssp ---------T------------HHHHH-HCGGGHHHHHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGGSCS----SEE
T ss_pred ---------h------------hhhhh-ccccchhhhHHHHHhh-hcccceEEEeCCCEEEecCHHHHhcCCc----cce
Confidence 0 00000 1235679999999999 4679999999999999999999999873 466
Q ss_pred EecCccCccchhcccCCCchhhhccCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHHcCCCCCCCcCCCChhh--hc
Q 008561 411 VETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGL--IT 488 (561)
Q Consensus 411 V~d~~~~~~~~~~~lnfs~p~i~~~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~DQd~LN~~l--i~ 488 (561)
|.+... ..|||+||||+|+++||.+++.+.+.+ .......||+.+|..+ ..
T Consensus 123 ~~~~~~-----------------------~~~~nsGv~l~~p~~~~~~~i~~~~~~----~~~~~~~dq~~ln~~~~~~~ 175 (263)
T d1ll2a_ 123 APDPGW-----------------------PDCFNSGVFVYQPSVETYNQLLHVASE----QGSFDGGDQGLLNTFFNSWA 175 (263)
T ss_dssp EECSSS-----------------------TTSEEEEEEEECCCHHHHHHHHHHHHH----TCCTTSSHHHHHHHHTTTTT
T ss_pred eccCCC-----------------------cccccCCcEEECccHHHHHHHHHHHHh----hCCCChhhhhHHHHHHHhhh
Confidence 665431 248899999999999999998776644 3334445777666422 34
Q ss_pred cCCceeecCCccccccCCC-CCCC-ChhhcCCcEEEEccCCCCCcccc
Q 008561 489 FYSTTKPLDKSWHVLGLGY-NPSI-SMEEIQNAAVVHFNGNMKPWLDI 534 (561)
Q Consensus 489 f~g~i~~Ld~~WN~~~lgy-~~~i-~~e~i~~~~IIHy~G~~KPW~~~ 534 (561)
+.+.+..|+..||+...+. .... .....++|+||||+|..|||...
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~~KPW~~~ 223 (263)
T d1ll2a_ 176 TTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYT 223 (263)
T ss_dssp TSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSC
T ss_pred ccCcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCCCCCCCCC
Confidence 5667777888888765321 1000 01245789999999999999865
No 3
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=91.23 E-value=1.8 Score=41.54 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=83.6
Q ss_pred cchhhhHHHh------hhhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCCC-chhhhc
Q 008561 362 LSILNHLRFY------LPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFS-HPLIKA 434 (561)
Q Consensus 362 ~S~~~y~Rl~------iPeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnfs-~p~i~~ 434 (561)
|+..+..|+- .-+++.++|-++|+|+|+++++.+.+= .+ |..+|...-+.-... .....|. +|.-..
T Consensus 114 Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~vg~E---~L-~~lv~~lHp~~y~~~--~~~fpyErrp~S~A 187 (287)
T d1o7qa_ 114 WQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKAD--PNDFTYERRKESAA 187 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSC--GGGSCCCCCTTSTT
T ss_pred CchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecccccc---cc-CCccceecccccCCC--CCCCCCcCCCCccc
Confidence 4445555543 455667899999999999999988651 22 445555444332100 0011111 121111
Q ss_pred --cCCCCCCccccceEEEecHHHHHhhHHHHHHHHHHH---cCCCCCC-CcCCCChhhhccCCceeecCCccccccCCCC
Q 008561 435 --KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNL---NENRTLW-KLGTLPPGLITFYSTTKPLDKSWHVLGLGYN 508 (561)
Q Consensus 435 --~f~~~~~yfNSGVmLiNL~kWR~~nitek~~~~l~~---~~~~~l~-DQd~LN~~li~f~g~i~~Ld~~WN~~~lgy~ 508 (561)
..+.+.-|+.+|+.==-..+.- ++++.+.+.+.. +.-...| |..-||-.++ ....++.|++.|.+... +.
T Consensus 188 yIp~~egd~Yy~G~~~GG~~~~vl--~m~~~~~~~i~~D~~n~IiA~WHDESHLNkyf~-~~kp~~~LsPeY~~~~~-~~ 263 (287)
T d1o7qa_ 188 YIPFGEGDFYYHAAIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDESHLNKYFL-LNKPTKILSPEYCWDYH-IG 263 (287)
T ss_dssp CCCTTCCSCCEEEEEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHH-HSCCSEEECGGGSBCGG-GC
T ss_pred cccCCCCceEEEeeecCCCHHHHH--HHHHHHHHhccCcccCCcceecccHHHHhhHHH-hCCCCcccChhhcCCcc-cC
Confidence 1234566888877644333332 245666665422 3333455 8888997543 33469999999887531 11
Q ss_pred CCCChhhcCCcEEEEccCCCC
Q 008561 509 PSISMEEIQNAAVVHFNGNMK 529 (561)
Q Consensus 509 ~~i~~e~i~~~~IIHy~G~~K 529 (561)
.-.+++|||+....|
T Consensus 264 ------~~~~~kiv~l~~~~k 278 (287)
T d1o7qa_ 264 ------LPADIKLVKMSWQTK 278 (287)
T ss_dssp ------CCTTCCSCSEEECCC
T ss_pred ------CCCCceEEEEeccCc
Confidence 113567888875433
No 4
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.77 E-value=3.1 Score=39.71 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=78.8
Q ss_pred hhhcccCCeEEEeecCeeEecCchhhhccCCCCCEEEEEecCccCccchhcccCC-Cchhhhc--cCCCCCCccccceEE
Q 008561 373 PEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNF-SHPLIKA--KFNPKACAWAYGMNF 449 (561)
Q Consensus 373 PeLlP~ldKVLYLD~DvIV~~DLseLw~lDL~gkviaAV~d~~~~~~~~~~~lnf-s~p~i~~--~f~~~~~yfNSGVmL 449 (561)
-+++.++|-++|+|+|+++.+.+.+= .+ |..+|...-|.-...+ ....| .+|.=.. ..+.+.-|+.+|+.=
T Consensus 136 ~~~~~e~DyLf~~DaDm~f~~~vg~E---~L-~~lvgv~HP~~y~~~~--~~~~yErrp~S~AyIp~~egd~Yy~G~~~G 209 (283)
T d1lzia_ 136 RRFLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFYGSSR--EAFTYERRPQSQAYIPKDEGDFYYLGGFFG 209 (283)
T ss_dssp HHHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEBCTTTTTCCG--GGSCCCCCTTSTTCCCTTCCSCCBCTTEEE
T ss_pred HHhhhcCCEEEEeecceEEecccccE---Ee-cCeeeEecccccCCCC--CCCCcccCcceeeeccCCCCCeEEEeeeeC
Confidence 45566799999999999999999762 23 5667766555421001 00111 1111011 133455688888765
Q ss_pred EecHHHHHhhHHHHHHHHHHH---cCCCCCC-CcCCCChhhhccCCceeecCCcccccc--CCCCCCCChhhcCCcEEEE
Q 008561 450 FDLDAWRREKCTEEYHYWQNL---NENRTLW-KLGTLPPGLITFYSTTKPLDKSWHVLG--LGYNPSISMEEIQNAAVVH 523 (561)
Q Consensus 450 iNL~kWR~~nitek~~~~l~~---~~~~~l~-DQd~LN~~li~f~g~i~~Ld~~WN~~~--lgy~~~i~~e~i~~~~IIH 523 (561)
=-.....+ +++.+.+.+.. ++-...| |..-||-.++. +..++.|+++|++-. .|+. ..++.++++|
T Consensus 210 G~~~~vl~--m~~~~~~~i~~D~~n~IiA~WHDEShlNkyf~~-nkp~kvLsPeY~~~e~~~~~p-----~~ik~~r~~~ 281 (283)
T d1lzia_ 210 GSVQEVQR--LTRACHQAMMVDQANGIEAVWHDESHLNKYLLR-HKPTKVLSPEYLWDQQLLGWP-----AVLRKLRFTA 281 (283)
T ss_dssp EEHHHHHH--HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH-SCCSEEECGGGSBCHHHHCCC-----TTCSCCCEEE
T ss_pred CCHHHHHH--HHHHHHHHHHHHhcCCceeeecchhHhhhHHHH-CCCCceeChhhcCCccccCCC-----cccceeeEec
Confidence 44444333 55666666532 3333556 88889975542 345999999998743 2332 3355666665
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=78.22 E-value=3.1 Score=40.79 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=71.3
Q ss_pred eeEEEEEcCCcchhHHHHHHHHHhCCCCCcEEEEEEecCCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHh
Q 008561 250 LYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQ 329 (561)
Q Consensus 250 ~iHIai~sDNvlaasVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~ 329 (561)
++.|++++=|-.++.-+|.|++++.+..+..-++|..|+-..+..+...... ..+. .+.+-++......|.
T Consensus 3 viPVlv~a~NRP~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~----~~v~--~I~~~~~~~~~~~~~--- 73 (343)
T d1fo8a_ 3 VIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYG----SAVT--HIRQPDLSNIAVQPD--- 73 (343)
T ss_dssp CCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTG----GGSE--EEECSCCCCCCCCTT---
T ss_pred cccEEEEEcCHHHHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHH----HHHH--HhcCCccccceecch---
Confidence 3456655555447788999999987665677789999998776554433211 1111 111111111000000
Q ss_pred hhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhhccc--CCeEEEeecCeeEecCchhhhcc
Q 008561 330 LESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK--LHRILFLDDDIVVQRDLTGLWKI 401 (561)
Q Consensus 330 le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeLlP~--ldKVLYLD~DvIV~~DLseLw~l 401 (561)
..+ ...+..+..+++.-|-.+|.. ++++|.|.+|+++-.|.=+.++.
T Consensus 74 -----------------------~~k--~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~ 122 (343)
T d1fo8a_ 74 -----------------------HRK--FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp -----------------------CGG--GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred -----------------------hhc--ccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHH
Confidence 000 012345566788888999985 69999999999999998766653
No 6
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.07 E-value=3.1e+02 Score=25.78 Aligned_cols=225 Identities=10% Similarity=0.136 Sum_probs=116.0
Q ss_pred EEEEcCC-c-chhHHHHHHHHHhCCCCCcEEEEEEec-CCChHHHHHHHhhccCCCceEEEEEecccccccccchhHHHh
Q 008561 253 YAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTD-KMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQ 329 (561)
Q Consensus 253 Iai~sDN-v-laasVvI~Sil~Ns~~p~~l~FHIvtD-~~~~~~m~~wf~l~~~~~a~I~V~~i~df~~l~~~~~Pvl~~ 329 (561)
+|+.+-| - -.+.-+|.|+=.+=..--++-.-++.| ..+.+-+...-...+ ..+++..|..-.|--.+....-+
T Consensus 22 ~v~L~RN~el~~~l~si~~~e~rFN~ky~YPwvflnd~~fteeFk~~i~~~~s---g~~~F~~i~~e~w~~P~~Id~~~- 97 (339)
T d1s4na_ 22 YVTLVRNKELKGLLSSIKYVENKINKKFPYPWVFLNDEPFTEEFKEAVTKAVS---SEVKFGILPKEHWSYPEWINQTK- 97 (339)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHTTTTSCCCEEEEESSCCCHHHHHHHHHHCS---SCEEEEECCGGGSSCCTTSCHHH-
T ss_pred EEEEeehHHHHHHHHHHHHHHHHccccCCCCEEEecCCCCCHHHHHHHHHhcC---CceEEEEcCHHHcCCCCCcCHHH-
Confidence 3334445 3 357778888877443322333334455 456665666555543 45777777654552222221100
Q ss_pred hhhhhhhhhhhhcccccccccccccccCCCCCcchhhhHHHhhhhh-----cccCCeEEEeecCeeEecCch-hhhc-cC
Q 008561 330 LESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEM-----YPKLHRILFLDDDIVVQRDLT-GLWK-ID 402 (561)
Q Consensus 330 le~~~~~~~~F~~~~~~~~~~~~~l~~~~p~y~S~~~y~Rl~iPeL-----lP~ldKVLYLD~DvIV~~DLs-eLw~-lD 402 (561)
.. ..+ .. ...++.+ ..-.|.-...||+...+ +.+++-+.=+|.|+.+..||. ++|. +.
T Consensus 98 ~~--~~~-----~~------~~~~v~y--g~s~sYrhMCRF~sg~f~~~p~L~~YdYywRvdpD~~f~cdI~yD~F~~M~ 162 (339)
T d1s4na_ 98 AA--EIR-----AD------AATKYIY--GGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDINYDVFKWMQ 162 (339)
T ss_dssp HH--HHH-----HH------HTTTSTT--TTCHHHHHHHHHHHHTGGGSGGGTTCSEEEECCTTCEECSCCCSCHHHHHH
T ss_pred HH--HHH-----Hh------hhccCcc--ccccchhHHHHHhhcccccchhhhccceEEEeCCCcEEecCCCCCHHHHHh
Confidence 00 000 00 0011112 12357777889887655 446999999999999999997 5665 34
Q ss_pred CCCCEEEEEe---cCccC----cc---ch----hcccCCC--chhhhc--cCCCCCCccccceEEEecHHHHHhhHHHHH
Q 008561 403 MDGKVNGAVE---TCFGS----FH---RY----AQYMNFS--HPLIKA--KFNPKACAWAYGMNFFDLDAWRREKCTEEY 464 (561)
Q Consensus 403 L~gkviaAV~---d~~~~----~~---~~----~~~lnfs--~p~i~~--~f~~~~~yfNSGVmLiNL~kWR~~nitek~ 464 (561)
-+|+..|.+. +.... +. .+ ..++.-. .+.+.. +-.-+.|.|=+..-+-||+-||...+ +.+
T Consensus 163 ~n~k~YGf~~~~~e~~~t~~tLw~~~~~f~~~~~~~~~~~n~~~~l~~~~~~~yn~c~fwsNFeI~~l~ffrs~~y-~~~ 241 (339)
T d1s4na_ 163 ENEKVYGFTVSIHEYEVTIPTLWQTSMDFIKKNPEYLDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWRSPAY-REY 241 (339)
T ss_dssp HTTCCEEESCEEECCGGGCTTHHHHHHHHHHHCGGGSCTTCCHHHHCSSTTSSCCCEEECTTSEEEEHHHHTSHHH-HHH
T ss_pred hcCCeEEEEEeecccHHHHhhHHHHHHHHHHhCccccCchhhhhhccCCCCCcccccccccCeeEeechHhcCHHH-HHH
Confidence 4566666442 22211 11 11 1111100 000111 00124577778999999999998775 556
Q ss_pred HHHHHHcCC---CCCCCcCCCChh--hhccCCceeecC
Q 008561 465 HYWQNLNEN---RTLWKLGTLPPG--LITFYSTTKPLD 497 (561)
Q Consensus 465 ~~~l~~~~~---~~l~DQd~LN~~--li~f~g~i~~Ld 497 (561)
.+++...++ .+--|..+...+ |.+-..+|+..+
T Consensus 242 f~~LD~~GGfyyeRWGDapVhsla~~lfl~k~~ih~F~ 279 (339)
T d1s4na_ 242 FDTLDHQGGFFYERWGDAPVHSIAAALFLPKDKIHYFS 279 (339)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHHHHHHSCGGGEEECT
T ss_pred HHHHHHcCCEEEeccccHHHHHHHHHHcCCHHHceecc
Confidence 666655433 232366653332 223345666553
No 7
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.28 E-value=6.7 Score=35.23 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhCCCCCcEEEEEEec---CCChHHHHHHHh
Q 008561 262 AASVVVNSAVKNSKEPWKHVFHVVTD---KMNLGAMQVMFK 299 (561)
Q Consensus 262 aasVvI~Sil~Ns~~p~~l~FHIvtD---~~~~~~m~~wf~ 299 (561)
+++|-|+=++.|+ +|..+.||++|| ..+..++++|+-
T Consensus 15 HLaVFL~yv~sq~-DPspLLfyL~td~yk~~~~Kd~rk~~~ 54 (190)
T d1iapa_ 15 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 54 (190)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 5899999999995 889999999998 456789999973
No 8
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.70 E-value=2.1e+02 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008561 146 ESILRQFEKEVKERIKLTRQIIAEAKES 173 (561)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (561)
++.+..|..|+.+.+..++..+.+....
T Consensus 4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~ 31 (105)
T d1tqga_ 4 MEYLGVFVDETKEYLQNLNDTLLELEKN 31 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455666666666666666666655543
No 9
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.80 E-value=4.4e+02 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=29.1
Q ss_pred eeEEEEEcCC-cch-hHHHHHHHHHhCCCCCcEEEEEEecCCChHHH
Q 008561 250 LYHYAIFSDN-VLA-ASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAM 294 (561)
Q Consensus 250 ~iHIai~sDN-vla-asVvI~Sil~Ns~~p~~l~FHIvtD~~~~~~m 294 (561)
.+-|++.+=| ... +.-+|.|++..+......-+-||.|+.+.+..
T Consensus 23 ~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~ 69 (328)
T d1xhba2 23 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFL 69 (328)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGG
T ss_pred CEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhH
Confidence 4677777777 444 56689999998753222456666666665543
No 10
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=11.16 E-value=4e+02 Score=22.05 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCcccchhhhh-hhHHH
Q 008561 177 QLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMR-LMEER 227 (561)
Q Consensus 177 ~~~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~r-L~~e~ 227 (561)
......|...+..+++|+... ...+..+.. =|.+.+|..|+ |..|-
T Consensus 43 peLk~~l~~H~~eT~~qi~rL---e~i~~~lg~--~p~~~~c~am~gli~e~ 89 (160)
T d2gyqa1 43 RDLSQGLTSHLEETQKQIERL---DQVFKKLGQ--KPSGVNCPAIDGLIKEA 89 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHTC--CSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHcCC--CCCCCccHHHHHHHHHH
Confidence 556677888888888887744 334455543 28999999999 66665
Done!