Your job contains 1 sequence.
>008562
MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLR
CIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKE
RVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWF
KDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEG
CKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKK
VNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRG
DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL
KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV
LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG
CRAEILQLDVTDVKMNCFLTE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008562
(561 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2034398 - symbol:AT1G20410 species:3702 "Arabi... 1037 6.2e-142 2
UNIPROTKB|E2R061 - symbol:PUS10 "Uncharacterized protein"... 561 1.1e-67 3
UNIPROTKB|Q3MIT2 - symbol:PUS10 "Putative tRNA pseudourid... 569 1.7e-67 3
UNIPROTKB|G3V6R8 - symbol:Pus10 "Protein Pus10" species:1... 548 2.4e-66 3
UNIPROTKB|F1MRD5 - symbol:PUS10 "Uncharacterized protein"... 553 3.9e-66 3
UNIPROTKB|F1SQM1 - symbol:PUS10 "Uncharacterized protein"... 537 7.1e-65 3
MGI|MGI:1921717 - symbol:Pus10 "pseudouridylate synthase ... 546 3.8e-64 3
UNIPROTKB|E1C8Y6 - symbol:PUS10 "Uncharacterized protein"... 526 4.8e-62 3
ZFIN|ZDB-GENE-080204-5 - symbol:pus10 "pseudouridylate sy... 536 4.8e-54 2
DICTYBASE|DDB_G0267794 - symbol:DDB_G0267794 "putative tR... 482 2.3e-50 2
FB|FBgn0031227 - symbol:CG3709 species:7227 "Drosophila m... 395 1.0e-36 1
UNIPROTKB|Q60346 - symbol:pus10 "tRNA pseudouridine synth... 334 6.4e-32 2
UNIPROTKB|Q8U1R6 - symbol:pus10 "tRNA pseudouridine synth... 275 5.9e-23 2
GENEDB_PFALCIPARUM|PF14_0023 - symbol:PF14_0023 "hypothet... 194 6.0e-21 2
UNIPROTKB|Q8IM68 - symbol:PF14_0023 "Putative uncharacter... 194 6.0e-21 2
>TAIR|locus:2034398 [details] [associations]
symbol:AT1G20410 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016570
"histone modification" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] InterPro:IPR020103 EMBL:CP002684 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K07583 OMA:ELSQTPW
IPI:IPI00520426 RefSeq:NP_173466.2 UniGene:At.45997
ProteinModelPortal:F4HSS8 PRIDE:F4HSS8 EnsemblPlants:AT1G20410.1
GeneID:838630 KEGG:ath:AT1G20410 Uniprot:F4HSS8
Length = 504
Score = 1037 (370.1 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 196/261 (75%), Positives = 223/261 (85%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
E +KV EPC C R PI+F GRY KYSRNVSQ+RWIID+ERMGEAS+EEI+GGNI
Sbjct: 245 ENSFEKVYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERMGEASVEEILGGNI 304
Query: 355 LPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKL 414
LP C GDSYKFHAAGREDIDVRMLGSGRPFL E+QN+R++PSE +KE+E KIN E KL
Sbjct: 305 LPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKSEKKL 364
Query: 415 VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQ 474
V VK+LK +GSQ W +MREGEAEKQKQY ALVWISRPL+++DF +IS LKE +ILQ
Sbjct: 365 VGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSISCLKEL----KILQ 420
Query: 475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
KTP+RVLHRRSPL+REKII+WMK+EKI G S YFLLH+CTQAGTYIKEFVHGDLGRT PS
Sbjct: 421 KTPVRVLHRRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIKEFVHGDLGRTTPS 480
Query: 535 IGSILGCRAEILQLDVTDVKM 555
+GSILGCRAEI+QLDVTDVKM
Sbjct: 481 MGSILGCRAEIIQLDVTDVKM 501
Score = 372 (136.0 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 91/223 (40%), Positives = 127/223 (56%)
Query: 39 DAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQV--PICSSLSVKSLLCHVLGEQADLHQNI 96
+ + L T AVKDLLS VC RCIFRL ++ SS+S +L + + +
Sbjct: 32 ETARSLHTGAVKDLLSLGVCERCIFRLVSVEAFDSDISSVSTSTLRSWLKSGDDETSASE 91
Query: 97 SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMP 156
SS IC CLGILQF + K+ +V+++S+ D+ I +LVK++ H+ DSF LEVS+P
Sbjct: 92 SSCS-TICIVCLGILQFVFSDVKKELVKSDSSSDYVARITDLVKQDRHEFDSFGLEVSVP 150
Query: 157 PTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTF 216
TI+ENE L Y+K KY +E W + IS KDALK L + L+ L + S+F
Sbjct: 151 STIMENERALLSYLKGKYSTEVWLQRDKIS----VKDALKVLLLDQLKASLGAESDSSSF 206
Query: 217 HIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKS 259
HIRLTY++ AS Q E KRRK DA+N + + + S
Sbjct: 207 HIRLTYTK--ASDEAQGASETTHESKRRKTDAENGSNCISENS 247
>UNIPROTKB|E2R061 [details] [associations]
symbol:PUS10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR020103
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00390000007529 KO:K07583 CTD:150962 OMA:VFTRMAV
EMBL:AAEX03007551 RefSeq:XP_538504.3 Ensembl:ENSCAFT00000004788
GeneID:481383 KEGG:cfa:481383 NextBio:20856199 Uniprot:E2R061
Length = 532
Score = 561 (202.5 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 125/323 (38%), Positives = 193/323 (59%)
Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
E +E C + C K+K SV + V+ K+ N +++ + +
Sbjct: 221 ETVEDCHFLRAICPECFKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFRKQFP 269
Query: 296 FPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++
Sbjct: 270 CPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHL 329
Query: 355 LPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENK 413
L + + +S+ F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK
Sbjct: 330 LAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK 389
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I
Sbjct: 390 -IQVRDLQLVTREAIGHMKEGEEEKTKSYSALIWTNKAIQKKDIEFLNDIKDL----KID 444
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
QKTP+RVLHRR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P
Sbjct: 445 QKTPLRVLHRRPLAVRTRIIHSMETRYV--DEHHFHLYLKTQAGTYIKEFVHGDFGRTKP 502
Query: 534 SIGSILGCRAEILQLDVTDVKMN 556
+IGS++ A+IL+LDV V ++
Sbjct: 503 NIGSLMNVTADILELDVESVDVD 525
Score = 102 (41.0 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 45/169 (26%), Positives = 77/169 (45%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C +KE F + + V+ G + + VS PP +
Sbjct: 110 NVCNVCLGILQ-EFC-EKE----------FIKKVCQKVEASGFEFTNLVFSVSFPPQLSV 157
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL-ETLLDVKC-GISTFHIR 219
E+ SL VK++ ++ R+ + K+A K+ +T+PL L V G S F +
Sbjct: 158 REHATSLLVKQEMGKQSLSLGRN--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 214
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSV 268
+ ++ E ++ +F+ I C AKN +V + A+ N +
Sbjct: 215 VVFAHPE-TVEDCHFLRAI--CPECFKPAKN-KQSVFTRMAVMKALNKI 259
Score = 55 (24.4 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLL 82
LLS C RCIFR G+ L K LL
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELL 45
>UNIPROTKB|Q3MIT2 [details] [associations]
symbol:PUS10 "Putative tRNA pseudouridine synthase Pus10"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR020103 EMBL:CH471053
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG1258 KO:K07583 EMBL:AK056874
EMBL:AL832208 EMBL:BC101680 EMBL:BC101706 IPI:IPI00065521
RefSeq:NP_653310.2 UniGene:Hs.368348 PDB:2V9K PDBsum:2V9K
ProteinModelPortal:Q3MIT2 SMR:Q3MIT2 STRING:Q3MIT2
PhosphoSite:Q3MIT2 DMDM:121942830 PaxDb:Q3MIT2 PRIDE:Q3MIT2
Ensembl:ENST00000316752 Ensembl:ENST00000407787 GeneID:150962
KEGG:hsa:150962 UCSC:uc002sao.3 CTD:150962 GeneCards:GC02M061167
HGNC:HGNC:26505 MIM:612787 neXtProt:NX_Q3MIT2 PharmGKB:PA162400393
HOGENOM:HOG000030855 HOVERGEN:HBG056180 InParanoid:Q3MIT2
OMA:VFTRMAV OrthoDB:EOG4CNQQR PhylomeDB:Q3MIT2 BRENDA:5.4.99.12
EvolutionaryTrace:Q3MIT2 GenomeRNAi:150962 NextBio:86567
ArrayExpress:Q3MIT2 Bgee:Q3MIT2 CleanEx:HS_PUS10
Genevestigator:Q3MIT2 Uniprot:Q3MIT2
Length = 529
Score = 569 (205.4 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 125/323 (38%), Positives = 195/323 (60%)
Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
E +E C +C K+K SV + V+ K+ N +++ + +
Sbjct: 218 ETVEDCHFLAAICPDCFKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFLKQFP 266
Query: 296 FPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++
Sbjct: 267 CPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHL 326
Query: 355 LPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENK 413
L + + +S+ F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK
Sbjct: 327 LAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK 386
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I
Sbjct: 387 -IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKDL----KID 441
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAGTYIKEFVHGD GRT P
Sbjct: 442 QKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKP 499
Query: 534 SIGSILGCRAEILQLDVTDVKMN 556
+IGS++ A+IL+LDV V ++
Sbjct: 500 NIGSLMNVTADILELDVESVDVD 522
Score = 95 (38.5 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 41/162 (25%), Positives = 68/162 (41%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C E+ DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFC---EK--------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL-ETLLDVKC-GISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL L V G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAI 261
+ ++ E +E C +C K+K ++
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNKQSV 243
Score = 52 (23.4 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLL 82
LL+ C RCIFR G+ L K LL
Sbjct: 15 LLNTGTCPRCIFRFCGVDFHAPYKLPYKELL 45
>UNIPROTKB|G3V6R8 [details] [associations]
symbol:Pus10 "Protein Pus10" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR020103 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00390000007529 OMA:VFTRMAV EMBL:CH473996
UniGene:Rn.163256 Ensembl:ENSRNOT00000008115 Uniprot:G3V6R8
Length = 528
Score = 548 (198.0 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
Identities = 113/251 (45%), Positives = 165/251 (65%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 278 LEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGERKMESSVEELISDHLLAVFKAESFNFS 337
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN +K ++V++L++V
Sbjct: 338 SSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQEIKELQQKINKSSDK-IQVRDLQLVTR 396
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W +R +Q +D + LK+ +I QKTP+RVLHRR
Sbjct: 397 EAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKDL----KIDQKTPLRVLHRRP 452
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R + I+ MK + +F LH+ TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 453 LAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 510
Query: 546 LQLDVTDVKMN 556
++LDV V ++
Sbjct: 511 VELDVESVDVD 521
Score = 101 (40.6 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
Identities = 38/138 (27%), Positives = 67/138 (48%)
Query: 94 QNISSVEPN---ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFS 150
+N+++ +P+ +C CLGILQ +C E+ DF + + V+ G + S
Sbjct: 95 ENMAATKPSNWRVCNVCLGILQ-GFC---EK--------DFITEVCQKVEASGFEFTSVV 142
Query: 151 LEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLD 208
L VS PP + E+ L VK++ ++ R+ + K+A K+ +T+PL E L
Sbjct: 143 LSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGV 199
Query: 209 VKCGISTFHIRLTYSRVE 226
G S F + + ++ E
Sbjct: 200 PTDGKSLFEVSVVFAHPE 217
Score = 56 (24.8 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLL 82
LL C RCIFR G+ +P K LL
Sbjct: 15 LLRSGTCPRCIFRFCGVDLPAPYKRPYKELL 45
>UNIPROTKB|F1MRD5 [details] [associations]
symbol:PUS10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR020103 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00390000007529 OMA:VFTRMAV EMBL:DAAA02031010
EMBL:DAAA02031011 EMBL:DAAA02031012 EMBL:DAAA02031013
EMBL:DAAA02031014 EMBL:DAAA02031015 EMBL:DAAA02031016
EMBL:DAAA02031017 IPI:IPI01018596 Ensembl:ENSBTAT00000012785
Uniprot:F1MRD5
Length = 533
Score = 553 (199.7 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 116/279 (41%), Positives = 177/279 (63%)
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 255 KALNKIKEEDFCKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 314
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 315 ERKLESSVEELISDHLLKVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 374
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 375 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDI 433
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ + +K+ I QKTP+RVLHRR R +II+ M+ + +F L++ TQAG
Sbjct: 434 EFLDDIKDL----NIDQKTPLRVLHRRPLAVRTRIIHSMETRYV--DEHHFRLYLKTQAG 487
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 488 TYIKEFVHGDFGRTKPNIGSLMDVTADILELDVESVDVD 526
Score = 95 (38.5 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C +KE F + + V+ G + + L VS PP +
Sbjct: 110 NVCNVCLGILQ-DFC-EKE----------FIKKVCQKVEASGFEFTNLVLSVSFPPQLSV 157
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL-ETLLDVKC-GISTFHIR 219
E+ L VK++ ++ R+ + K+A K+ +T+PL L V G S F +
Sbjct: 158 REHAAWLLVKQEMGKQSLSLGRN--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 214
Query: 220 LTYSRVE 226
+ ++ E
Sbjct: 215 VVFAHPE 221
Score = 55 (24.4 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLL 82
LLS C RCIFR G+ L K LL
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELL 45
>UNIPROTKB|F1SQM1 [details] [associations]
symbol:PUS10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR020103 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00390000007529 OMA:VFTRMAV EMBL:CU694829
Ensembl:ENSSSCT00000009182 Uniprot:F1SQM1
Length = 536
Score = 537 (194.1 bits), Expect = 7.1e-65, Sum P(3) = 7.1e-65
Identities = 122/327 (37%), Positives = 192/327 (58%)
Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
E +E C + C K+K SV + V+ K+ N +++ + +
Sbjct: 221 ETVEDCHFLRAICPECFKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFRKQFP 269
Query: 296 FPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++
Sbjct: 270 CPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHL 329
Query: 355 LPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENK 413
L + + +S+ F ++GRED+DVR LG+GRPF E+ N + + +KE++ +IN+ NK
Sbjct: 330 LTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTSQEIKELQQRINNSSNK 389
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ +I
Sbjct: 390 -IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKDL----KID 444
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT----YIKEFVHGDLG 529
QKTP+RVLHRR R ++I+ M+ + +F L++ TQAGT YIKEFVHGD G
Sbjct: 445 QKTPLRVLHRRPLAVRTRLIHSMETHYV--DEHHFRLYLKTQAGTTNPSYIKEFVHGDFG 502
Query: 530 RTNPSIGSILGCRAEILQLDVTDVKMN 556
RT P+IGS++ A+IL+LDV V ++
Sbjct: 503 RTKPNIGSLMDVTADILELDVESVDVD 529
Score = 91 (37.1 bits), Expect = 7.1e-65, Sum P(3) = 7.1e-65
Identities = 44/169 (26%), Positives = 74/169 (43%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C E A F + + V+ G + + VS PP +
Sbjct: 110 NVCNVCLGILQ-DFC---------EKA--FIKKVCQKVEASGFEFTNLVFSVSFPPQLSV 157
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL-ETLLDVKC-GISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL L V G S F +
Sbjct: 158 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 214
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSV 268
+ ++ E ++ +F+ I C AKN +V + A+ N +
Sbjct: 215 VVFAHPE-TVEDCHFLRAI--CPECFKPAKN-KQSVFTRMAVMKALNKI 259
Score = 63 (27.2 bits), Expect = 7.1e-65, Sum P(3) = 7.1e-65
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPN 102
LLS C RCIFR G+ V L K LL + + ++S PN
Sbjct: 15 LLSTGTCARCIFRFCGVDVHAPYKLPYKELLNELQKFLETENDELASEVPN 65
>MGI|MGI:1921717 [details] [associations]
symbol:Pus10 "pseudouridylate synthase 10" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR020103 MGI:MGI:1921717 GO:GO:0003723
GO:GO:0008033 EMBL:AL672049 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 UniGene:Mm.29536 eggNOG:COG1258
GeneTree:ENSGT00390000007529 KO:K07583 CTD:150962
HOGENOM:HOG000030855 HOVERGEN:HBG056180 OMA:VFTRMAV
OrthoDB:EOG4CNQQR EMBL:AK017063 EMBL:AK012737 EMBL:AK028368
EMBL:AK029866 EMBL:AK088562 EMBL:AK145055 EMBL:AL805916
EMBL:BX255874 EMBL:BC025555 IPI:IPI00458792 RefSeq:NP_001028826.1
RefSeq:NP_082580.1 RefSeq:NP_083232.1 ProteinModelPortal:Q9D3U0
SMR:Q9D3U0 STRING:Q9D3U0 PhosphoSite:Q9D3U0 PaxDb:Q9D3U0
PRIDE:Q9D3U0 Ensembl:ENSMUST00000020520 Ensembl:ENSMUST00000058163
Ensembl:ENSMUST00000109525 GeneID:74467 KEGG:mmu:74467
UCSC:uc007ifk.1 InParanoid:Q9D3U0 ChiTaRS:PUS10 NextBio:340846
Bgee:Q9D3U0 CleanEx:MM_PUS10 Genevestigator:Q9D3U0 Uniprot:Q9D3U0
Length = 527
Score = 546 (197.3 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 118/267 (44%), Positives = 170/267 (63%)
Query: 295 EFPLKKVNEP---CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEII 350
+FP N P C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I
Sbjct: 262 QFPCPP-NSPKTVCTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGERKMESSVEELI 320
Query: 351 GGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINS 409
++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V + +KE++ IN
Sbjct: 321 SDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQEMKELQQTINK 380
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
+K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D + LK+
Sbjct: 381 SSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKDL--- 436
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGTYIKEFVHGD G
Sbjct: 437 -KIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKEFVHGDFG 493
Query: 530 RTNPSIGSILGCRAEILQLDVTDVKMN 556
RT P++GS++ A+IL+LDV V ++
Sbjct: 494 RTKPNLGSLMNVTADILELDVESVDVD 520
Score = 89 (36.4 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 35/128 (27%), Positives = 59/128 (46%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C E+ F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFC---EK--------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEAS 228
++ E +
Sbjct: 211 VFAHPETA 218
Score = 49 (22.3 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLL 82
L S C RCI R G+ +P K LL
Sbjct: 15 LFSSGTCPRCILRFCGVDLPAPYKHPSKELL 45
>UNIPROTKB|E1C8Y6 [details] [associations]
symbol:PUS10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR020103 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00390000007529 KO:K07583 CTD:150962 OMA:VFTRMAV
EMBL:AADN02046886 EMBL:AADN02046885 IPI:IPI00588190
RefSeq:NP_001186378.1 UniGene:Gga.26573 Ensembl:ENSGALT00000012717
GeneID:421198 KEGG:gga:421198 NextBio:20824003 Uniprot:E1C8Y6
Length = 538
Score = 526 (190.2 bits), Expect = 4.8e-62, Sum P(3) = 4.8e-62
Identities = 125/322 (38%), Positives = 185/322 (57%)
Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
E E C+ +C K+K ++ +V+ E I K + L+ + P
Sbjct: 227 ETDEECRFLATVCPDCFKPAKNKQSVF-TRMAVIKALEKI----KEEDFLK-HFPCP--- 277
Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
P N LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I +++
Sbjct: 278 -PSSPKNLCVALEIQCNNGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISEHLM 336
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKL 414
+ DS+ F ++GRED+DVR LG+GRPF E+ N + + +K + IN+ +K
Sbjct: 337 AEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTAEEMKGFQQTINNSSDK- 395
Query: 415 VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQ 474
++V++L++V + M+EGE EK K Y+AL+W + +Q E + +KE ++ Q
Sbjct: 396 IQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKTIQKEHIAFLDDIKEL----KLDQ 451
Query: 475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
KTP+RVLHRR R +II+ MK + I +F LH+ TQAGTYIKEFVHGD GRT P+
Sbjct: 452 KTPLRVLHRRPLALRCRIIHTMKSQYI--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPN 509
Query: 535 IGSILGCRAEILQLDVTDVKMN 556
IGS+L +IL+LDV V ++
Sbjct: 510 IGSLLNRTTDILELDVESVDID 531
Score = 93 (37.8 bits), Expect = 4.8e-62, Sum P(3) = 4.8e-62
Identities = 50/195 (25%), Positives = 80/195 (41%)
Query: 88 EQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQID 147
E +D+ +N S+VE +C CLGILQ +C DF + E V Q
Sbjct: 106 ENSDV-EN-SAVE--VCNVCLGILQ-EFC-----------EIDFVKKMCEKVNSSDFQFT 149
Query: 148 SFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS--ECSSTKDALKFALTNPLET 205
SF VS+PP + E+ L VK+ E D S++ + K+A K+ + L
Sbjct: 150 SFVFSVSLPPQLSVREHAAWLLVKQ----EMGKLDLSLAKDDIVQLKEAYKWIIHPQLSE 205
Query: 206 LLDVKC-GISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGV 264
L V G S F + + ++ E E C+ +C K+K ++
Sbjct: 206 ELGVPTDGKSLFEVSVVFAHPETD----------EECRFLATVCPDCFKPAKNKQSVF-T 254
Query: 265 ENSVVSTTEVIPVDE 279
+V+ E I ++
Sbjct: 255 RMAVIKALEKIKEED 269
Score = 45 (20.9 bits), Expect = 4.8e-62, Sum P(3) = 4.8e-62
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 49 VKDLLSKEVCLRCIFR 64
V+ LLS C RCIFR
Sbjct: 12 VQLLLSAGTCPRCIFR 27
>ZFIN|ZDB-GENE-080204-5 [details] [associations]
symbol:pus10 "pseudouridylate synthase 10"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR020103
ZFIN:ZDB-GENE-080204-5 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00390000007529 EMBL:CU929072
IPI:IPI00877489 Ensembl:ENSDART00000114689 ArrayExpress:F1QV54
Bgee:F1QV54 Uniprot:F1QV54
Length = 519
Score = 536 (193.7 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 123/339 (36%), Positives = 187/339 (55%)
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
L S E S+ + E E C +C K+K+ S+ + V+ E
Sbjct: 193 LANSPCEVSVGFIH-AETDEDCHFLANTCPDCFKPTKNKA-------SIFTRMAVVKALE 244
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K S + S + P KK N C L+ C T ++ GRY K+SR + QT W+ID
Sbjct: 245 KIS----EETFSRYYPCPPKKPNSRCSALDTTCLHTSVFIAGRYNKFSRELPQTPWVIDG 300
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER + S+EE+I +L R D + F ++GRED+DVR LG+GRPF E+ N +
Sbjct: 301 ERRMDGSVEELIAAPLLSSFRADGFNFSSSGREDVDVRTLGNGRPFAVELLNPHRAKFNR 360
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+K+I+ IN +K +RV++L+IV + + M+EGE EK K Y+AL+W + + D
Sbjct: 361 TEIKQIQETINQSSDK-IRVRDLQIVSREATSRMKEGEEEKTKTYSALIWTEKTIDSSDL 419
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++K+ ++ QKTP+RVLHRR R+++I+ M + +F L + TQAG
Sbjct: 420 HFLENIKDL----KVAQKTPLRVLHRRPLAVRQRLIHSMS--SVYLDKHHFTLKLRTQAG 473
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P++ ++ A+IL+LDV V ++
Sbjct: 474 TYIKEFVHGDFGRTKPNLCDLMNTDADILELDVESVDID 512
Score = 40 (19.1 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 49 VKDLLSKEVCLRCIFR 64
V+ LL C+RC+ R
Sbjct: 12 VRKLLCAGCCVRCVLR 27
>DICTYBASE|DDB_G0267794 [details] [associations]
symbol:DDB_G0267794 "putative tRNA pseudouridine
synthase" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR020103 dictyBase:DDB_G0267794 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG1258 KO:K07583 RefSeq:XP_647312.1
ProteinModelPortal:Q55G71 STRING:Q55G71 EnsemblProtists:DDB0189550
GeneID:8616123 KEGG:ddi:DDB_G0267794 InParanoid:Q55G71 OMA:VCPRCIF
Uniprot:Q55G71
Length = 640
Score = 482 (174.7 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 122/309 (39%), Positives = 177/309 (57%)
Query: 258 KSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETH-EFPLKKVNEPCRLEC-----LC 311
+S G + ST + SSN + + + T EF L V P + L
Sbjct: 338 QSTKRGGKRQKQSTKRIKVASADSSNSVNELLSNTTKKEFELHGVVPPTPPKTKYSYELS 397
Query: 312 FR-TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
F+ P++ G+Y K+ R++SQT W D+ +S++++I +I + DS F +GR
Sbjct: 398 FKHEPVFLAGKYNKFVRDLSQTPWEYDD-----SSVQDLICKDIQETFKADSILFTTSGR 452
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVPSELL-VKEIESKINSLENKLVRVKNLKIVGSQGWT 429
EDIDVRMLG GRPF EI N + + +++ES IN K ++V NL+++ + T
Sbjct: 453 EDIDVRMLGDGRPFYIEIVNPHRIFFKNQDFEKLESSIND-STKKIKVSNLQLITKKETT 511
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
++++ KQK Y +W SR LQ D T+++LK+ Q+ Q TPIRVLHRRS + R
Sbjct: 512 IIKDSGGTKQKNYRCFIWTSRILQPSDLDTLNNLKDI----QLHQNTPIRVLHRRSLMIR 567
Query: 490 EKIINWMKIEKIAGSSQYFLLHMC-TQAGTYIKEFVHGDLGRTNPSIGSILG-CRAEILQ 547
K I+ K+ S +F+L + QAGTYIKEFVHGDLGRT P+IG +LG C A+ILQ
Sbjct: 568 NKKIS--KLHATFISPHFFMLDIIDAQAGTYIKEFVHGDLGRTLPNIGLLLGNCEADILQ 625
Query: 548 LDVTDVKMN 556
LDV +V +N
Sbjct: 626 LDVLNVDLN 634
Score = 131 (51.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 86/357 (24%), Positives = 151/357 (42%)
Query: 94 QNISSVEPN--------ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQ 145
+N+ +PN +C CLGILQ T +KE ++ +F V + K G++
Sbjct: 197 ENLKKYDPNMNERWNNFVCCCCLGILQDT--NNKELFLD-----EFIVKM----KNSGYE 245
Query: 146 IDSFSLEVSMPPTILENENKLSLYVKRKYRS--EAWFKDRSISECSSTKDALKFALTNPL 203
++SL +SMP + L E + Y+ + + A KD+S+ E K+ +K+ L P+
Sbjct: 246 FQNYSLALSMPTSTLIREQSIWYYLVDSFPNVYSADKKDKSMVEI---KEGVKWVL-GPI 301
Query: 204 ---ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSA 260
+ K S F + Y E Q F+ ++ KR K +K SA
Sbjct: 302 ISRQLFFQFKPS-SDFRGNMQYIHEETKDDHQ-FLLSLQSTKRGGKRQKQSTKRIKVASA 359
Query: 261 ITGVENSVVSTTEVIPVDEKSSNGLQDNEPSET-HEFPLKKVNEPCRLECLCFRTPIYFG 319
+ NSV E +G+ P +T + + L +EP ++
Sbjct: 360 DSS--NSVNELLSNTTKKEFELHGVVPPTPPKTKYSYELSFKHEP-----------VFLA 406
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEA---SIEEII-GGNILPMCRG--D-SYKFHAAGRED 372
G+Y K+ R++SQT W D+ + + I+E +IL G D + GR
Sbjct: 407 GKYNKFVRDLSQTPWEYDDSSVQDLICKDIQETFKADSILFTTSGREDIDVRMLGDGRP- 465
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
+ ++ R F F+ Q+ ++ S + + K+++L+ L+ K I+ G T
Sbjct: 466 FYIEIVNPHRIF-FKNQDFEKLESSINDSTKKIKVSNLQ--LITKKETTIIKDSGGT 519
Score = 59 (25.8 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 30 EDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGM-QVPICS-SLSVKSLLCHVL- 86
E +L +A +PT + L S +VC RCIFR + ++ I SL+ S L L
Sbjct: 116 ESMESRLFKNA--HIPT--IVQLNSIKVCPRCIFRFLNIKELSIYQESLNTLSHLIQFLM 171
Query: 87 --GEQADLHQN 95
+Q DL++N
Sbjct: 172 FNQKQKDLNEN 182
>FB|FBgn0031227 [details] [associations]
symbol:CG3709 species:7227 "Drosophila melanogaster"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR020103 EMBL:AE014134
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AY069446 RefSeq:NP_608500.1 UniGene:Dm.2125
ProteinModelPortal:Q9VPK7 SMR:Q9VPK7 STRING:Q9VPK7 PaxDb:Q9VPK7
EnsemblMetazoa:FBtr0078147 GeneID:33178 KEGG:dme:Dmel_CG3709
UCSC:CG3709-RA FlyBase:FBgn0031227 eggNOG:COG1258
GeneTree:ENSGT00390000007529 InParanoid:Q9VPK7 KO:K07583
OMA:ELSQTPW OrthoDB:EOG46DJJ7 PhylomeDB:Q9VPK7 GenomeRNAi:33178
NextBio:782289 Bgee:Q9VPK7 Uniprot:Q9VPK7
Length = 500
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 104/275 (37%), Positives = 158/275 (57%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMCRGDSYK--FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEI 403
IEEII ++ P K F ++GRED+DVR LG GRPF+ EI NA+ S L E
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAKR--SCLTKDEA 338
Query: 404 ESKINSLE-NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISS 462
+ +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 339 FAMERAVDASGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVS---VKILEQ 395
Query: 463 LKETVRCYQILQKTPIRVLHRRSPLE-REKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
L+ + + I QKTPIRVLHRR PL R + I + + G+ + ++ + TQAGTYIK
Sbjct: 396 LQISAS-FNIQQKTPIRVLHRR-PLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGTYIK 453
Query: 522 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
E VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 454 ELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>UNIPROTKB|Q60346 [details] [associations]
symbol:pus10 "tRNA pseudouridine synthase Pus10"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IDA] HAMAP:MF_01893
InterPro:IPR004114 InterPro:IPR005912 InterPro:IPR020103
Pfam:PF02926 PROSITE:PS51165 GO:GO:0000049 EMBL:L77117
GenomeReviews:L77117_GR GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG1258 KO:K07583 PIR:A64305 RefSeq:NP_247004.1
ProteinModelPortal:Q60346 GeneID:1450879 KEGG:mja:MJ_0041
OMA:PQTRWPC ProtClustDB:PRK14554 TIGRFAMs:TIGR01213 Uniprot:Q60346
Length = 454
Score = 334 (122.6 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 100/285 (35%), Positives = 141/285 (49%)
Query: 287 DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER------ 340
D P + + + +N P E P++ GRY K R + QTRW + R
Sbjct: 179 DKAPDKEYPDIVVHIN-PYTEEIYLQINPLFIKGRYRKLVRGIPQTRWPCRKCRGKGCEL 237
Query: 341 ---MGEA---SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREV 394
G+ S+EEII L +G KFH AGREDIDVRMLG GRPF+ EI+ +
Sbjct: 238 CNYTGKKYPISVEEIIAKPFLEATKGVDAKFHGAGREDIDVRMLGDGRPFVLEIKEPKIR 297
Query: 395 PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQD 454
+L +I +IN ++ V V NL+ + + + +K Y ALV S + D
Sbjct: 298 KIDL--NKIAEEIN--KDGRVEVLNLEFGVRKDKVIFKN--TPHRKTYRALVECSDKITD 351
Query: 455 EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT 514
E+ + + E YQ KTP RVLHRR+ LER + + +K K+ + + ++ C
Sbjct: 352 EELKLLEKELENRTIYQ---KTPKRVLHRRADLERIRKVYKVKTSKV-DDNHFEMIIYC- 406
Query: 515 QAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFL 559
G YIKE + GD GRTNPS+ SIL +LDV + N L
Sbjct: 407 DGGLYIKELISGDDGRTNPSVSSILNKNCICKELDVLKIHDNNLL 451
Score = 41 (19.5 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 29 DEDKNEKLLNDAVQFL 44
++ K EKLLN A++ L
Sbjct: 114 NKQKMEKLLNKAIELL 129
>UNIPROTKB|Q8U1R6 [details] [associations]
symbol:pus10 "tRNA pseudouridine synthase Pus10"
species:186497 "Pyrococcus furiosus DSM 3638" [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IDA] HAMAP:MF_01893
InterPro:IPR004114 InterPro:IPR005912 InterPro:IPR020103
Pfam:PF02926 PROSITE:PS51165 SMART:SM00981 GO:GO:0000049
EMBL:AE009950 GenomeReviews:AE009950_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG1258 KO:K07583 OMA:PQTRWPC
ProtClustDB:PRK14554 TIGRFAMs:TIGR01213 RefSeq:NP_578868.1
ProteinModelPortal:Q8U1R6 PRIDE:Q8U1R6
EnsemblBacteria:EBPYRT00000005621 GeneID:1469008 KEGG:pfu:PF1139
HOGENOM:HOG000227928 BioCyc:MetaCyc:MONOMER-16703 Uniprot:Q8U1R6
Length = 388
Score = 275 (101.9 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 73/190 (38%), Positives = 109/190 (57%)
Query: 365 FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVG 424
F AGRED+DVRMLG+GRPF+ EI+ R+ ++ +K+IE +IN ++ V V NL+ +
Sbjct: 203 FKGAGREDVDVRMLGNGRPFVVEIKRPRK--RKVNLKDIEEEIN--QSGKVEVLNLRFIT 258
Query: 425 SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRVLHR 483
+ R +K Y A+V++ + E+ + + SLK +I Q+TP RVL+
Sbjct: 259 PE--EAERILTTRHRKVYEAIVYVKDGITKEEVEKVVKSLKNA----EIKQRTPRRVLNS 312
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R + + +K E I ++F L + T G YIKE + GD GRT PS+ ILG A
Sbjct: 313 RADLVRVRKVYDVKGELI--DDKHFKLRLVTDGGLYIKELISGDRGRTTPSVSEILGKEA 370
Query: 544 EILQLDVTDV 553
LDV +V
Sbjct: 371 WCEILDVLEV 380
Score = 197 (74.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 66/188 (35%), Positives = 98/188 (52%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
PIY GRY K R + QT +E SI II G F AGRED+D
Sbjct: 159 PIYVAGRYRKLIRGIPQTPAPGFKE-----SIATIICRAFKKHFHGKCI-FKGAGREDVD 212
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
VRMLG+GRPF+ EI+ R+ ++ +K+IE +IN ++ V V NL+ + + R
Sbjct: 213 VRMLGNGRPFVVEIKRPRK--RKVNLKDIEEEIN--QSGKVEVLNLRFITPE--EAERIL 266
Query: 435 EAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
+K Y A+V++ + E+ + + SLK +I Q+TP RVL+ R+ L R + +
Sbjct: 267 TTRHRKVYEAIVYVKDGITKEEVEKVVKSLKNA----EIKQRTPRRVLNSRADLVRVRKV 322
Query: 494 NWMKIEKI 501
+K E I
Sbjct: 323 YDVKGELI 330
Score = 41 (19.5 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 47 DAVKDLLSK-EVCLRCIFRLFG 67
+ +++L + ++C C+ RLFG
Sbjct: 4 EKAREILEEHQLCNHCLGRLFG 25
>GENEDB_PFALCIPARUM|PF14_0023 [details] [associations]
symbol:PF14_0023 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR020103 GO:GO:0003723
EMBL:AE014187 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
RefSeq:XP_001348196.1 ProteinModelPortal:Q8IM68
EnsemblProtists:PF14_0023:mRNA GeneID:811587 KEGG:pfa:PF14_0023
EuPathDB:PlasmoDB:PF3D7_1402100 HOGENOM:HOG000281398
ProtClustDB:CLSZ2432776 Uniprot:Q8IM68
Length = 879
Score = 194 (73.4 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 51/129 (39%), Positives = 76/129 (58%)
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTI----SSLKETVRCY--QILQKTPIRVLHR 483
LM+ GE E++K+Y +++ S + + Q I S+ + Y +I+QKTPIRVLHR
Sbjct: 748 LMKYGE-ERKKEYKCIIYHSSKMNKDTIQKINDQISNHEPQTLTYVLKIIQKTPIRVLHR 806
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG--C 541
RS + RE+ I +I+ I + LL++ ++G YIKEFV+GD GRT P++ G
Sbjct: 807 RSLINRERKI--FQIKLIYLHKHFSLLYLLAESGLYIKEFVNGDKGRTIPNLKQFFGDDT 864
Query: 542 RAEILQLDV 550
IL LDV
Sbjct: 865 YVNILNLDV 873
Score = 137 (53.3 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 36/125 (28%), Positives = 64/125 (51%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
G Y KY++ +SQT+W+I+ SIEE I + + F +GRED D RM+
Sbjct: 426 GYYNKYNKEISQTKWLINNISNSVLSIEECISNIFNNIFSFSTATFIGSGREDKDARMMN 485
Query: 380 SGRPFLFEIQNARE--VPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAE 437
GRPF++ +++ + + L + +K N ++N N+ + L++E +
Sbjct: 486 IGRPFVYVLKDTKFSFLNFFLFFSNLSNKQNGIKN--YNTINVNTIQEYNQFLLQE---K 540
Query: 438 KQKQY 442
K+K+Y
Sbjct: 541 KKKKY 545
>UNIPROTKB|Q8IM68 [details] [associations]
symbol:PF14_0023 "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR020103 GO:GO:0003723
EMBL:AE014187 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
RefSeq:XP_001348196.1 ProteinModelPortal:Q8IM68
EnsemblProtists:PF14_0023:mRNA GeneID:811587 KEGG:pfa:PF14_0023
EuPathDB:PlasmoDB:PF3D7_1402100 HOGENOM:HOG000281398
ProtClustDB:CLSZ2432776 Uniprot:Q8IM68
Length = 879
Score = 194 (73.4 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 51/129 (39%), Positives = 76/129 (58%)
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTI----SSLKETVRCY--QILQKTPIRVLHR 483
LM+ GE E++K+Y +++ S + + Q I S+ + Y +I+QKTPIRVLHR
Sbjct: 748 LMKYGE-ERKKEYKCIIYHSSKMNKDTIQKINDQISNHEPQTLTYVLKIIQKTPIRVLHR 806
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG--C 541
RS + RE+ I +I+ I + LL++ ++G YIKEFV+GD GRT P++ G
Sbjct: 807 RSLINRERKI--FQIKLIYLHKHFSLLYLLAESGLYIKEFVNGDKGRTIPNLKQFFGDDT 864
Query: 542 RAEILQLDV 550
IL LDV
Sbjct: 865 YVNILNLDV 873
Score = 137 (53.3 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 36/125 (28%), Positives = 64/125 (51%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
G Y KY++ +SQT+W+I+ SIEE I + + F +GRED D RM+
Sbjct: 426 GYYNKYNKEISQTKWLINNISNSVLSIEECISNIFNNIFSFSTATFIGSGREDKDARMMN 485
Query: 380 SGRPFLFEIQNARE--VPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAE 437
GRPF++ +++ + + L + +K N ++N N+ + L++E +
Sbjct: 486 IGRPFVYVLKDTKFSFLNFFLFFSNLSNKQNGIKN--YNTINVNTIQEYNQFLLQE---K 540
Query: 438 KQKQY 442
K+K+Y
Sbjct: 541 KKKKY 545
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 561 561 0.00099 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 616 (65 KB)
Total size of DFA: 315 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.33u 0.19s 50.52t Elapsed: 00:00:02
Total cpu time: 50.34u 0.19s 50.53t Elapsed: 00:00:02
Start: Fri May 10 02:13:05 2013 End: Fri May 10 02:13:07 2013