BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008562
(561 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302141690|emb|CBI18893.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/566 (64%), Positives = 440/566 (77%), Gaps = 11/566 (1%)
Query: 1 MANETEDAPTNSASESHA--TSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVC 58
M +ETEDA ++ E+ A +SA +R + + ++LNDAV + AVKDLLS +C
Sbjct: 32 MHHETEDAHASNGHEAVAKVSSAAEDRRMIAGEDDMRILNDAVSKVSPHAVKDLLSLGIC 91
Query: 59 LRCIFRLFGMQVPI--CSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYC 116
+ CIFRL G++ I C SL + S+L V+ A S EP IC CLG+LQFTY
Sbjct: 92 IGCIFRLSGVRGHIFSCPSLLL-SILHPVIDSGAAHSSQESECEPVICSICLGVLQFTYF 150
Query: 117 GDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRS 176
DK+ +V+ +SA + AV+IA LVKKEGH+ D+FSLEVS+PP I ENE+ + LY+K+KY S
Sbjct: 151 DDKKMLVKKDSADELAVSIANLVKKEGHEFDNFSLEVSIPPVIAENEHVVLLYMKKKYGS 210
Query: 177 EAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLTYSRVEASIRIQNFV 235
E WF+++ +SE S KDALK +L NPLE LLDVK G STF IRLTY++ AS + QN
Sbjct: 211 ELWFQEKFLSERISAKDALKLSLCNPLEKLLDVKSSGSSTFRIRLTYAQPRASGKNQNIT 270
Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
E+ +GCKRR+ +N TV S + G+E S +ST+E K S+GLQDNE S+ +
Sbjct: 271 ERSQGCKRRRTGTENIFSTVHG-SVVDGIECSDISTSEADAGIRKPSDGLQDNENSDCFK 329
Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
FPL+KVN+PC L LC+RT IY GGRYLKYSRNVSQTRWIID+ERMGEAS+EEIIGGNIL
Sbjct: 330 FPLEKVNQPCHLAFLCYRTHIYIGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNIL 389
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLV 415
PMC GD+YKFHAAGREDI+VRMLGSGRPFL EIQN+R VPSE L+KEIE KIN+LENKLV
Sbjct: 390 PMCLGDNYKFHAAGREDINVRMLGSGRPFLVEIQNSRHVPSEALIKEIEVKINNLENKLV 449
Query: 416 RVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQK 475
RVKNLK+V S GW+LM+EGE EKQKQYAALVWI RPL+DED Q ISSLK+ +ILQ+
Sbjct: 450 RVKNLKLVDSHGWSLMQEGEEEKQKQYAALVWIDRPLKDEDMQAISSLKDK----KILQR 505
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TPIRVLHRRSPLEREKII+WMKIEKIAGSSQYFLLH+CTQAGTYIKEFVHGDLGRT+PS+
Sbjct: 506 TPIRVLHRRSPLEREKIIHWMKIEKIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSV 565
Query: 536 GSILGCRAEILQLDVTDVKMNCFLTE 561
GSILGCRAEILQLDVT+VKM+CFL E
Sbjct: 566 GSILGCRAEILQLDVTEVKMDCFLDE 591
>gi|225459802|ref|XP_002284814.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Vitis
vinifera]
Length = 578
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/584 (63%), Positives = 444/584 (76%), Gaps = 29/584 (4%)
Query: 1 MANETEDAPTNSASESHA--TSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVC 58
M +ETEDA ++ E+ A +SA +R + + ++LNDAV + AVKDLLS +C
Sbjct: 1 MHHETEDAHASNGHEAVAKVSSAAEDRRMIAGEDDMRILNDAVSKVSPHAVKDLLSLGIC 60
Query: 59 LRCIFRLFGMQVPI--CSSLSVKSLLCHVLGEQAD--LHQNI----------------SS 98
+ CIFRL G++ I C SL + S+L V+GE D H+ S
Sbjct: 61 IGCIFRLSGVRGHIFSCPSL-LLSILHPVIGEPTDSSTHRYTGIGGNEDSGAAHSSQESE 119
Query: 99 VEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPT 158
EP IC CLG+LQFTY DK+ +V+ +SA + AV+IA LVKKEGH+ D+FSLEVS+PP
Sbjct: 120 CEPVICSICLGVLQFTYFDDKKMLVKKDSADELAVSIANLVKKEGHEFDNFSLEVSIPPV 179
Query: 159 ILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFH 217
I ENE+ + LY+K+KY SE WF+++ +SE S KDALK +L NPLE LLDVK G STF
Sbjct: 180 IAENEHVVLLYMKKKYGSELWFQEKFLSERISAKDALKLSLCNPLEKLLDVKSSGSSTFR 239
Query: 218 IRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPV 277
IRLTY++ AS + QN E+ +GCKRR+ +N TV S + G+E S +ST+E
Sbjct: 240 IRLTYAQPRASGKNQNITERSQGCKRRRTGTENIFSTVHG-SVVDGIECSDISTSEADAG 298
Query: 278 DEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIID 337
K S+GLQDNE S+ +FPL+KVN+PC L LC+RT IY GGRYLKYSRNVSQTRWIID
Sbjct: 299 IRKPSDGLQDNENSDCFKFPLEKVNQPCHLAFLCYRTHIYIGGRYLKYSRNVSQTRWIID 358
Query: 338 EERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSE 397
+ERMGEAS+EEIIGGNILPMC GD+YKFHAAGREDI+VRMLGSGRPFL EIQN+R VPSE
Sbjct: 359 DERMGEASVEEIIGGNILPMCLGDNYKFHAAGREDINVRMLGSGRPFLVEIQNSRHVPSE 418
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
L+KEIE KIN+LENKLVRVKNLK+V S GW+LM+EGE EKQKQYAALVWI RPL+DED
Sbjct: 419 ALIKEIEVKINNLENKLVRVKNLKLVDSHGWSLMQEGEEEKQKQYAALVWIDRPLKDEDM 478
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
Q ISSLK+ +ILQ+TPIRVLHRRSPLEREKII+WMKIEKIAGSSQYFLLH+CTQAG
Sbjct: 479 QAISSLKDK----KILQRTPIRVLHRRSPLEREKIIHWMKIEKIAGSSQYFLLHLCTQAG 534
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE 561
TYIKEFVHGDLGRT+PS+GSILGCRAEILQLDVT+VKM+CFL E
Sbjct: 535 TYIKEFVHGDLGRTHPSVGSILGCRAEILQLDVTEVKMDCFLDE 578
>gi|255539118|ref|XP_002510624.1| conserved hypothetical protein [Ricinus communis]
gi|223551325|gb|EEF52811.1| conserved hypothetical protein [Ricinus communis]
Length = 565
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/575 (59%), Positives = 436/575 (75%), Gaps = 24/575 (4%)
Query: 1 MANETE---DAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEV 57
M++ETE D+ ++A+ + +A+ + + DED +L N+AV+ LP+ AVK LL +
Sbjct: 1 MSSETEAPLDSTLDAAAPVFSPTANAKFSIGDEDM--RLFNEAVRSLPSHAVKGLLRNGI 58
Query: 58 CLRCIFRLFGMQVPICSSLSV-KSLLCHVLGEQADLHQNI--------SSVEPNICRSCL 108
C+RCIFRL G+Q I + + +SL+ ++LGE +++ S V+ IC CL
Sbjct: 59 CMRCIFRLLGVQGHIFFTYPLSRSLMHNILGESWKDDEDMKGCSTYNESGVDQEICNVCL 118
Query: 109 GILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSL 168
GILQF + DK +V+ +A + V+IAEL+K+EGHQIDSFSLEVS+ P I ENE + L
Sbjct: 119 GILQFIHRDDKGVLVKKHNAVNLCVSIAELIKQEGHQIDSFSLEVSIAPIIQENERVIRL 178
Query: 169 YVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEAS 228
Y++RKYRSE WF++ S+S+C TK+ALKFA+ NPLE +LDVK G S+ IRLTY++ + S
Sbjct: 179 YMERKYRSELWFQE-SVSKCICTKEALKFAIANPLERMLDVKSGPSSCRIRLTYTQAKPS 237
Query: 229 IRIQNFVEKIEGCKRRKVDAKNCLDTVKDK--SAITGVENSVVSTTEVIPVDEKSSNGLQ 286
N V EGCKRRK + ++V ++ +A G +S S + I E S GL+
Sbjct: 238 GIAPNSVPGGEGCKRRKTGITDAPESVNNELINARNGCFDS--SMYKGIDSSESSFCGLE 295
Query: 287 DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASI 346
++E SE FP +KV EPC L LC+RTPIYFGGRYLK+SRNVSQTRWIID+ERMGEASI
Sbjct: 296 NHESSEC-IFPKEKVKEPCNLLFLCYRTPIYFGGRYLKFSRNVSQTRWIIDDERMGEASI 354
Query: 347 EEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESK 406
EEIIGG+I PMC+GDSYKFHAAGREDIDVRMLGSGRPFL EIQN R++PSE LV+EIE+K
Sbjct: 355 EEIIGGSIFPMCQGDSYKFHAAGREDIDVRMLGSGRPFLVEIQNPRQLPSETLVEEIETK 414
Query: 407 INSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKET 466
IN++ +KLV V++LK+V + WTLM EGEAEKQKQY ALVWISRPL+D+D Q+I+SLK+
Sbjct: 415 INNMHDKLVGVRHLKMVSNHSWTLMHEGEAEKQKQYCALVWISRPLEDQDLQSIASLKDM 474
Query: 467 VRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHG 526
QILQ+TP+RVLHRRSPLER+KII+WMKIE++ GS QYFLLH+CTQAGTYIKEFVHG
Sbjct: 475 ----QILQRTPVRVLHRRSPLERQKIIHWMKIERLTGSCQYFLLHLCTQAGTYIKEFVHG 530
Query: 527 DLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE 561
DLGRT+PSIGSILGCRAEILQLDVT+VKM+CFL E
Sbjct: 531 DLGRTHPSIGSILGCRAEILQLDVTEVKMDCFLAE 565
>gi|224085980|ref|XP_002307763.1| predicted protein [Populus trichocarpa]
gi|222857212|gb|EEE94759.1| predicted protein [Populus trichocarpa]
Length = 520
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/562 (59%), Positives = 401/562 (71%), Gaps = 43/562 (7%)
Query: 1 MANETEDAP-TNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCL 59
M++ETE A +N S + + T D + LNDAV+ LP+ AVKDLLS
Sbjct: 1 MSSETEAAQFSNGTDAVQVISPNDDHRVTPGDDERRHLNDAVRSLPSHAVKDLLSAG--- 57
Query: 60 RCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDK 119
G+ + S ++P +CR CLGILQF Y +K
Sbjct: 58 ---------------------------GDSSSSESMESELKPEVCRICLGILQFIYRDEK 90
Query: 120 ERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAW 179
E +V+ ++ + A +IAEL ++EGHQID FSLEVS+PP I ENE + LY+K+KY SE W
Sbjct: 91 EMLVKRKNGDELAASIAELTRQEGHQIDGFSLEVSIPPIIFENEQAVRLYMKKKYGSELW 150
Query: 180 FKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIE 239
F++R +SEC STKDALKFA+ NPLE +LDVK G S IRLTY+ + SI V++
Sbjct: 151 FQER-LSECISTKDALKFAIVNPLEIILDVKSGPSYVRIRLTYTETKPSIIPSKSVDRNG 209
Query: 240 GCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLK 299
G N LDTV + G +S + P +SS GL ++E SE FPL+
Sbjct: 210 G-------TNNGLDTVHVELVGNGTGCCDLSLGQGSPASGRSSTGLAEHESSECSNFPLE 262
Query: 300 KVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCR 359
+VNEPC L LC+RTPIYFGGRYLK+SRNVSQTRWIID+ERMGEASIEEIIGGNILPMC+
Sbjct: 263 RVNEPCHLVFLCYRTPIYFGGRYLKFSRNVSQTRWIIDDERMGEASIEEIIGGNILPMCQ 322
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
GDSYKFHAAGREDIDVRMLGSGRPFL E+QNAREVPSE LVKEIE+++N+L NKLV VKN
Sbjct: 323 GDSYKFHAAGREDIDVRMLGSGRPFLVEVQNAREVPSEALVKEIETRMNNLGNKLVGVKN 382
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
L +V S W LMREGEAEKQKQY+ALVWISRPL+DED Q I+S K+ QILQ+TP+R
Sbjct: 383 LSLVTSHSWDLMREGEAEKQKQYSALVWISRPLEDEDLQCIASHKD----LQILQRTPVR 438
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
VLHRRSPLER KII+WMKIE+I GSSQYFLLH+CTQAGTYIKEFVHGDLGRT+PSIGSIL
Sbjct: 439 VLHRRSPLERGKIIHWMKIEQITGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSIL 498
Query: 540 GCRAEILQLDVTDVKMNCFLTE 561
CRAEILQLDVTDVKM+CFL E
Sbjct: 499 RCRAEILQLDVTDVKMDCFLAE 520
>gi|356552044|ref|XP_003544381.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Glycine
max]
Length = 484
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 315/529 (59%), Positives = 380/529 (71%), Gaps = 53/529 (10%)
Query: 33 NEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSL-SVKSLLCHVLGEQAD 91
EK V+ LP+DAVK+LLS VC RCIFRLFG+Q P+ +S S+ SL D
Sbjct: 8 GEKEFEQMVRALPSDAVKELLSHGVCTRCIFRLFGLQGPVYASPPSLSSLF--------D 59
Query: 92 LHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSL 151
Q + +C CLGILQFTY V+N+ + + IA++VK++ +Q D+FSL
Sbjct: 60 ATQ-----QDCLCTLCLGILQFTYSN-----VQND---NLPLLIADMVKRQAYQFDTFSL 106
Query: 152 EVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC 211
EVS+PP I+++ N L Y+K KY S+ WF++ S C STKDALKF+L PL+ LL+ K
Sbjct: 107 EVSIPPIIIDDVNFLCSYMKTKYGSQPWFQENLHSGCISTKDALKFSLIYPLQNLLECKS 166
Query: 212 GISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVST 271
+ F IRLTY+ + + + + E CKRRK+ E S+V
Sbjct: 167 NMGPFRIRLTYTHTKGNDKSSDCAA--ETCKRRKIG-----------------EPSIVG- 206
Query: 272 TEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQ 331
E+S + +N+ S+ +F L+K NEPC C+RTP YFGGRYLKYSRNVSQ
Sbjct: 207 -------ERSFSSTLENDSSDCCKFLLEKANEPCHFTYSCYRTPFYFGGRYLKYSRNVSQ 259
Query: 332 TRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA 391
TRWIID+ERMGEAS+EEIIGGNIL C+GDS+KFHAAGREDIDVRMLG GRPFL E+QN
Sbjct: 260 TRWIIDDERMGEASVEEIIGGNILQACQGDSFKFHAAGREDIDVRMLGPGRPFLVEVQNG 319
Query: 392 REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRP 451
R +PSEL VK+IE IN +ENKLVRVKNLK+VGS GW LMREGEAEKQKQYAALVWISRP
Sbjct: 320 RHIPSELFVKDIEKTINKMENKLVRVKNLKLVGSDGWNLMREGEAEKQKQYAALVWISRP 379
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLH 511
L+DED Q +SSLK+ ++LQ+TPIRVLHRRSPLEREKII+WMK E IAGSSQYFLLH
Sbjct: 380 LKDEDIQCVSSLKDL----KVLQRTPIRVLHRRSPLEREKIIHWMKTETIAGSSQYFLLH 435
Query: 512 MCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLT 560
+CTQAGTYIKEFVHGDLGRT+PSIGSILGCRAEILQLDVTD+KM CFLT
Sbjct: 436 LCTQAGTYIKEFVHGDLGRTHPSIGSILGCRAEILQLDVTDIKMECFLT 484
>gi|449455705|ref|XP_004145592.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Cucumis
sativus]
Length = 497
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/564 (54%), Positives = 377/564 (66%), Gaps = 70/564 (12%)
Query: 1 MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLR 60
MANE ++ N + + A ++ + + DK + +P+ A KDLLS VC+
Sbjct: 1 MANEQDEVQANPEATALALTSVTQEAISPGDKLQ---------IPSYATKDLLSIGVCIP 51
Query: 61 CIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKE 120
CI RL G++ S S SL +LG + + + + N C CLGILQF+Y DK
Sbjct: 52 CIIRLSGIER---HSYSF-SLSAPILGSDNEAIDDAN--DRNTCCLCLGILQFSYIDDKG 105
Query: 121 RVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWF 180
++ + D AV+I+E+VKKEGHQIDSFSLEVS+P ILENE ++ LY+KRKY SE WF
Sbjct: 106 DFIKCKGVDDLAVSISEMVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWF 165
Query: 181 KDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEK-IE 239
+ + C S KDALK +T PLETLLD K S IRLTYS +AS N +++ +
Sbjct: 166 QGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQD 225
Query: 240 GCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDN--EPSETHEFP 297
G K RK+ V + E P D + N + D+ PS+ FP
Sbjct: 226 GFKMRKI----------------------VGSDE--PSDISNCNSVADDCINPSQEVVFP 261
Query: 298 LKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM 357
+ YSRNVSQTRW+I EERMGEAS+EEI+G NILP
Sbjct: 262 QET------------------------YSRNVSQTRWVIGEERMGEASVEEILGNNILPF 297
Query: 358 CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRV 417
CRGDSYKFHAAGRED+DVRMLGSGRPFL EIQNAR +PSE+++ EI+SKINS ENKL+ V
Sbjct: 298 CRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGV 357
Query: 418 KNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
+NLK+VGS+GW L++EGEAEKQKQYAALVW SRPL+D D +ISSLK+ +ILQ+TP
Sbjct: 358 RNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLLSISSLKD----LKILQRTP 413
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
IRVLHRRSPLEREKII+WMKIEK+A SSQY+LLH+CTQAGTYIKEFVHGDLGRT+PSIGS
Sbjct: 414 IRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGS 473
Query: 538 ILGCRAEILQLDVTDVKMNCFLTE 561
IL CRAEILQLDVTD+KM+C L E
Sbjct: 474 ILSCRAEILQLDVTDIKMDCHLGE 497
>gi|297850454|ref|XP_002893108.1| hypothetical protein ARALYDRAFT_889490 [Arabidopsis lyrata subsp.
lyrata]
gi|297338950|gb|EFH69367.1| hypothetical protein ARALYDRAFT_889490 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/527 (54%), Positives = 350/527 (66%), Gaps = 49/527 (9%)
Query: 31 DKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQA 90
D + + + + L + AVKDLLS VC RCIFRL ++ SV + H +
Sbjct: 24 DSKTRRVYETARSLHSGAVKDLLSLGVCERCIFRLVAVEAFDSDISSVSTSTLHSWLKSG 83
Query: 91 DLHQNIS-SVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSF 149
D S S IC CLGILQF + K+ +V+++S+ D+ I +LVK++ H+ DSF
Sbjct: 84 DGETGSSESSCSRICIVCLGILQFVFSDAKKELVKSDSSSDYVSRITDLVKQDRHEFDSF 143
Query: 150 SLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDV 209
LEVS+P TI+ENE L Y+K KY +E W + S KDALK L + L+ L
Sbjct: 144 GLEVSVPSTIMENERALLSYLKGKYSTEVWLQRDKFS----VKDALKVLLLDQLKASLGA 199
Query: 210 KCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVV 269
+ S+FHIRLTY++ AS Q E KRRK DA+N
Sbjct: 200 ESDSSSFHIRLTYTK--ASDEAQGASETTHESKRRKTDAEN------------------- 238
Query: 270 STTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNV 329
SN + +N +KV EPC C R PI+F GRY KYSRNV
Sbjct: 239 -----------GSNCISEN--------SFEKVYEPCIFSVHCNRMPIFFSGRYFKYSRNV 279
Query: 330 SQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQ 389
SQ+RWIID+ERMGEAS+EEI+GGNILP C GDSYKFHAAGREDIDVRMLGSGRPFL E+Q
Sbjct: 280 SQSRWIIDDERMGEASVEEILGGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQ 339
Query: 390 NAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWIS 449
N+R+ PSE +KE+E KIN+ E KLV VK+LK +GSQ W +MREGEAEKQKQY ALVWIS
Sbjct: 340 NSRQCPSEQSLKEVEEKINNSEKKLVGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWIS 399
Query: 450 RPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFL 509
RPL+++DF ++SSLKE +ILQKTP+RVLHRRSPL+REKII+WMKIEKI G + YFL
Sbjct: 400 RPLEEKDFNSVSSLKE----LKILQKTPVRVLHRRSPLDREKIIHWMKIEKIKGHAHYFL 455
Query: 510 LHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
LH+CTQAGTYIKEFVHGDLGRT PS+GSILGCRAEI+QLDVTDVKM
Sbjct: 456 LHLCTQAGTYIKEFVHGDLGRTTPSMGSILGCRAEIIQLDVTDVKMG 502
>gi|30686818|ref|NP_173466.2| Pseudouridine synthase family protein [Arabidopsis thaliana]
gi|332191849|gb|AEE29970.1| Pseudouridine synthase family protein [Arabidopsis thaliana]
Length = 504
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/515 (55%), Positives = 348/515 (67%), Gaps = 51/515 (9%)
Query: 44 LPTDAVKDLLSKEVCLRCIFRLFGMQV--PICSSLSVKSLLCHVLGEQADLHQNISSVEP 101
L T AVKDLLS VC RCIFRL ++ SS+S +L + + + SS
Sbjct: 37 LHTGAVKDLLSLGVCERCIFRLVSVEAFDSDISSVSTSTLRSWLKSGDDETSASESSC-S 95
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
IC CLGILQF + K+ +V+++S+ D+ I +LVK++ H+ DSF LEVS+P TI+E
Sbjct: 96 TICIVCLGILQFVFSDVKKELVKSDSSSDYVARITDLVKQDRHEFDSFGLEVSVPSTIME 155
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLT 221
NE L Y+K KY +E W + IS KDALK L + L+ L + S+FHIRLT
Sbjct: 156 NERALLSYLKGKYSTEVWLQRDKIS----VKDALKVLLLDQLKASLGAESDSSSFHIRLT 211
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
Y++ AS Q E KRRK DA+N
Sbjct: 212 YTK--ASDEAQGASETTHESKRRKTDAEN------------------------------G 239
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERM 341
SN + +N +KV EPC C R PI+F GRY KYSRNVSQ+RWIID+ERM
Sbjct: 240 SNCISEN--------SFEKVYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERM 291
Query: 342 GEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVK 401
GEAS+EEI+GGNILP C GDSYKFHAAGREDIDVRMLGSGRPFL E+QN+R++PSE +K
Sbjct: 292 GEASVEEILGGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLK 351
Query: 402 EIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTIS 461
E+E KIN E KLV VK+LK +GSQ W +MREGEAEKQKQY ALVWISRPL+++DF +IS
Sbjct: 352 EVEEKINKSEKKLVGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSIS 411
Query: 462 SLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
LKE +ILQKTP+RVLHRRSPL+REKII+WMK+EKI G S YFLLH+CTQAGTYIK
Sbjct: 412 CLKE----LKILQKTPVRVLHRRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIK 467
Query: 522 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
EFVHGDLGRT PS+GSILGCRAEI+QLDVTDVKM
Sbjct: 468 EFVHGDLGRTTPSMGSILGCRAEIIQLDVTDVKMG 502
>gi|26453124|dbj|BAC43638.1| unknown protein [Arabidopsis thaliana]
gi|29028890|gb|AAO64824.1| At1g20410 [Arabidopsis thaliana]
Length = 504
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/515 (55%), Positives = 346/515 (67%), Gaps = 51/515 (9%)
Query: 44 LPTDAVKDLLSKEVCLRCIFRLFGMQV--PICSSLSVKSLLCHVLGEQADLHQNISSVEP 101
L T AVKDLLS VC RCIFRL ++ SS+S +L + + + SS
Sbjct: 37 LHTGAVKDLLSLGVCERCIFRLVSVEAFDSDISSVSTSTLRSWLKSGDDETSASESSC-S 95
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
IC CLGILQF + K+ +V+++S+ D+ I +LVK++ H+ +SF LEVS+P TI+E
Sbjct: 96 TICIVCLGILQFVFSDVKKELVKSDSSSDYVARITDLVKQDRHEFNSFGLEVSVPSTIME 155
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLT 221
NE L Y+K KY +E W + IS KDALK L + L+ L + S+FHIRLT
Sbjct: 156 NERALLSYLKGKYSTEVWLQRDKIS----VKDALKVLLLDQLKASLGAESDSSSFHIRLT 211
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
Y++ AS Q E KRRK DA+N
Sbjct: 212 YTK--ASDEAQGASETTHESKRRKTDAEN------------------------------G 239
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERM 341
SN + +N +KV PC C R PI+F GRY KYSRNVSQ+RWIID+ERM
Sbjct: 240 SNCISEN--------SFEKVYGPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERM 291
Query: 342 GEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVK 401
GEAS+EEI+GGNILP C GDSYKFHAAGREDIDVRMLGSGRPFL E+QN+R++PSE +K
Sbjct: 292 GEASVEEILGGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLK 351
Query: 402 EIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTIS 461
E+E KIN E KLV VK+LK +GSQ W +MREGEAEKQKQY ALVWISRPL+++DF +IS
Sbjct: 352 EVEEKINKSEKKLVGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSIS 411
Query: 462 SLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
LKE +ILQKTP+RVLHRRSPL+REKII+WMK+EKI G S YFLLH+CTQAGTYIK
Sbjct: 412 CLKE----LKILQKTPVRVLHRRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIK 467
Query: 522 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
EFVHGDLGRT PS GSILGCRAEI+QLDVTDVKM
Sbjct: 468 EFVHGDLGRTTPSKGSILGCRAEIIQLDVTDVKMG 502
>gi|307136310|gb|ADN34134.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 501
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/562 (53%), Positives = 371/562 (66%), Gaps = 62/562 (11%)
Query: 1 MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLR 60
MANE ++ N + A ++ + + DK +QF P+ A KDLLS VC+
Sbjct: 1 MANEQDEVQANPEATPLALTSVTQEAISPGDK--------LQF-PSYAAKDLLSIGVCIP 51
Query: 61 CIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKE 120
CI RL G++ S SL +LG + ++ + + N C CLGILQF+Y DK
Sbjct: 52 CIIRLSGIERHNYSF----SLSAPILGSDTEAIEDDN--DRNTCCLCLGILQFSYIDDKG 105
Query: 121 RVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWF 180
++ + D AV+I+E+VKKEGHQIDSFSLEVS+P ILENE ++ LY+KRKY SE WF
Sbjct: 106 DFIKCKGVDDLAVSISEMVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWF 165
Query: 181 KDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEK-IE 239
+ + C S KDALK +T PLETLLD K S IRLTYS +AS N +++ +
Sbjct: 166 QGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNGNGNSIKRNQD 225
Query: 240 GCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLK 299
G K RK+ L+T+ D A+ E S +S V V + N PS+ FP +
Sbjct: 226 GFKMRKISNDCSLETIDDSIAVGSDEPSDISNCNVNSVADDCIN------PSQEVIFPQE 279
Query: 300 KVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCR 359
YSRNVSQTRW+I EERMGEAS+EEI+G NILP CR
Sbjct: 280 T------------------------YSRNVSQTRWVIGEERMGEASVEEILGNNILPFCR 315
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
GDSYKFHAAGR PFL EIQNAR +PSE+++ EI+SKINS E KLV V+N
Sbjct: 316 GDSYKFHAAGR------------PFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRN 363
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
LK+VGS+GW L++EGEAEKQKQYAALVW SRPL+D+DF +ISSLK+ +ILQ+TPIR
Sbjct: 364 LKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDDDFLSISSLKD----LKILQRTPIR 419
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
VLHRRSPLEREKII+WMKIEK+A SSQY+LLH+CTQAGTYIKEFVHGDLGRT+PSIGSIL
Sbjct: 420 VLHRRSPLEREKIIHWMKIEKVAKSSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSIL 479
Query: 540 GCRAEILQLDVTDVKMNCFLTE 561
CRAEILQLDVTD+KM+C L E
Sbjct: 480 SCRAEILQLDVTDIKMDCHLAE 501
>gi|414585880|tpg|DAA36451.1| TPA: hypothetical protein ZEAMMB73_773187 [Zea mays]
Length = 536
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/524 (51%), Positives = 354/524 (67%), Gaps = 17/524 (3%)
Query: 43 FLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNIS----- 97
F P AV LLS VC+RCI RL G CS + + + H E+ D ++I
Sbjct: 17 FPPLHAVHHLLSVGVCVRCILRLLGAYSSACSYACLTASVLHSFLEEHD--ESIKGGSCP 74
Query: 98 --SVEPNICRSCLGILQFTYCGDKERVVENESAC--DFAVAIAELVKKEGHQIDSFSLEV 153
S+ C CLG+L T+ D+ N + + + I++ V E +Q+D FSLE+
Sbjct: 75 CLSMNDAYCSVCLGVLLPTFHRDEGLETPNGISHIDNMSSVISQAVHGESYQVDEFSLEI 134
Query: 154 SMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKCG 212
S+PP I NE + LY+K+KY +E WFKD+ ++ + S K+AL+ + LE L++ K G
Sbjct: 135 SLPPVIAANERAVRLYMKQKYGNENWFKDKMFAQQTMSVKEALRLLIAPSLEKLMNAKHG 194
Query: 213 ISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTT 272
++F IRLTY+ +AS ++ + + E ++RK D++ D + + + + T+
Sbjct: 195 NNSFRIRLTYTHGDASQKLHSLLPN-EHSRKRKPDSRKGGDASNEAHKRNSADGNPIQTS 253
Query: 273 EVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQT 332
E KS G+QD E + P +KV +PC L C R+P Y GGRYLK SRNVSQ+
Sbjct: 254 ESDSFIYKSLEGIQDQEFCNAFQLPPEKVFKPCHLLISCLRSPTYLGGRYLKLSRNVSQS 313
Query: 333 RWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR 392
WIID+ERMGEAS+EEIIG N+ +CRGDS KFHAAGREDIDVRMLGSGRPFL E+ N R
Sbjct: 314 CWIIDDERMGEASVEEIIGENVRAICRGDSCKFHAAGREDIDVRMLGSGRPFLVEVLNVR 373
Query: 393 EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPL 452
+PSE V++IE +IN+ E K V V+NLK+V ++ WT+MREGEAEKQKQY AL+W SR L
Sbjct: 374 SIPSETEVQQIEERINNSEKKYVIVRNLKLVDNEIWTMMREGEAEKQKQYTALIWTSRDL 433
Query: 453 QDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHM 512
D+D IS +KE +I+QKTPIRVLHRRSPLER++II+WM+IEKI GSS Y+LLH+
Sbjct: 434 TDDDLHNISIMKEM----EIVQKTPIRVLHRRSPLERKRIIHWMEIEKITGSSNYYLLHL 489
Query: 513 CTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
CTQAGTYIKEFVHGDLGRT+PSIG+I+GCRAEILQLDVTDVKM+
Sbjct: 490 CTQAGTYIKEFVHGDLGRTHPSIGAIIGCRAEILQLDVTDVKMD 533
>gi|116310151|emb|CAH67165.1| H0211B05.2 [Oryza sativa Indica Group]
gi|218195372|gb|EEC77799.1| hypothetical protein OsI_16978 [Oryza sativa Indica Group]
Length = 536
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 269/525 (51%), Positives = 353/525 (67%), Gaps = 19/525 (3%)
Query: 40 AVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCH-VLGEQADLHQNIS- 97
A F P A+ LLS VC+RCIFR FG LS+ + + H L E D ++ S
Sbjct: 20 ASSFPPLHAIHHLLSVGVCVRCIFRFFGAFSYAAPCLSLTASVLHSFLEEHDDFAKSGSC 79
Query: 98 ---SVEPNICRSCLGILQFT-YCGDKERVVENESACDFAVAI-AELVKKEGHQIDSFSLE 152
S + C C G+L T Y D + + S D +I +E V++EGHQ+D FSLE
Sbjct: 80 SCLSKDEAYCSICFGVLLPTCYQDDGVEPLRSVSPIDNVTSIISEAVQREGHQVDEFSLE 139
Query: 153 VSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKC 211
+S+P I N+ + LY+K KY S WF ++ S+ + S K+AL+ L +E ++VK
Sbjct: 140 ISLPAVIAANDRAIRLYMKEKYGSANWFDEKIFSQQTMSVKEALRILLVPSVEKQMNVKH 199
Query: 212 GISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVST 271
G ++F IRLTY+ E S ++ + G ++RK ++++ K T + ++S
Sbjct: 200 GNNSFRIRLTYTHDEGSQKLLRLLPNDHG-RKRKTESRDG----SSKRGSTDDDKQILSE 254
Query: 272 TEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQ 331
++ K+ G+QD + + P +KV EPC L C R+PIY GGRYLK SRNVSQ
Sbjct: 255 SDAFI--NKTLEGIQDQDFRSLFQLPPEKVLEPCHLVISCQRSPIYIGGRYLKLSRNVSQ 312
Query: 332 TRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA 391
+ WIID+ERMGEAS+EEIIG N+ +C+GD YKFHAAGREDIDVRMLGSGRPFL E+ N
Sbjct: 313 SCWIIDDERMGEASVEEIIGENVRAICKGDGYKFHAAGREDIDVRMLGSGRPFLVEVLNV 372
Query: 392 REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRP 451
R +PS V++I KIN E K VRV+NLK+VGS+ WT+MREGEAEKQKQYAAL+W SRP
Sbjct: 373 RSIPSATEVQQIADKINDSEKKHVRVRNLKLVGSEIWTMMREGEAEKQKQYAALIWTSRP 432
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLH 511
L D+D IS +K+ +I+QKTPIRVLHRRSPLER++II+WM+IEKI+G S Y+LLH
Sbjct: 433 LTDDDLHNISLIKDM----EIVQKTPIRVLHRRSPLERKRIIHWMEIEKISGGSNYYLLH 488
Query: 512 MCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+CTQAGTYIKEFVHGDLGRT+PS+G +L CRAEILQLDVTDVKM+
Sbjct: 489 LCTQAGTYIKEFVHGDLGRTHPSVGVMLSCRAEILQLDVTDVKMD 533
>gi|222629357|gb|EEE61489.1| hypothetical protein OsJ_15774 [Oryza sativa Japonica Group]
Length = 536
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/525 (50%), Positives = 350/525 (66%), Gaps = 19/525 (3%)
Query: 40 AVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSV 99
A F P A+ LLS VC+RCIFR FG LS+ + + H E+ D S
Sbjct: 20 ASSFPPLHAIHHLLSVGVCVRCIFRFFGAFSYAAPCLSLTASVLHSFLEEHDDSAKSGSC 79
Query: 100 -----EPNICRSCLGILQFT-YCGDKERVVENESACDFAVAI-AELVKKEGHQIDSFSLE 152
+ C C G+L T Y D + + S D +I +E V++EGHQ+D FSLE
Sbjct: 80 SCLSKDEAYCSICFGVLLPTCYQDDGVEPLRSVSPIDNVTSIISEAVQREGHQVDEFSLE 139
Query: 153 VSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKC 211
+S+P I N+ + LY+K KY S WF ++ S+ + S K+AL+ L +E ++VK
Sbjct: 140 ISLPAVIAANDRAIRLYMKEKYGSANWFDEKIFSQQTMSVKEALRILLVPSVEKQMNVKH 199
Query: 212 GISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVST 271
G ++F IRLTY+ E S ++ + G ++RK ++++ K T + ++S
Sbjct: 200 GNNSFRIRLTYTHDEGSQKLLRLLPNDRG-RKRKTESRDG----SSKRGSTDDDKQILSE 254
Query: 272 TEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQ 331
++ K+ G+QD + + P +KV EPC L C R+PIY GGRYLK SRNVSQ
Sbjct: 255 SDAFI--NKNLEGIQDQDFRSLFQLPPEKVLEPCHLVISCQRSPIYIGGRYLKLSRNVSQ 312
Query: 332 TRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA 391
+ WIID+ERMGEAS+EEIIG N+ +C+GD YKFHAAGREDIDVRMLGSGRPFL E+ N
Sbjct: 313 SCWIIDDERMGEASVEEIIGENVRAICKGDGYKFHAAGREDIDVRMLGSGRPFLVEVLNV 372
Query: 392 REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRP 451
R +PS V++I KIN E K VRV+NLK+VGS+ WT+MREGEAEKQKQYAAL+W SRP
Sbjct: 373 RSIPSATEVQQIADKINDSEKKHVRVRNLKLVGSEIWTMMREGEAEKQKQYAALIWTSRP 432
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLH 511
L D+D IS +K+ +I+QKTPIRVLHRRSPLER++II+WM+IEKI+G S Y+LLH
Sbjct: 433 LTDDDLHNISLIKDM----EIVQKTPIRVLHRRSPLERKRIIHWMEIEKISGGSNYYLLH 488
Query: 512 MCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+CTQAGTYIKEFVHGDLGRT+PS+G +L CRAEILQLDVTDVKM+
Sbjct: 489 LCTQAGTYIKEFVHGDLGRTHPSVGVMLSCRAEILQLDVTDVKMD 533
>gi|297845004|ref|XP_002890383.1| hypothetical protein ARALYDRAFT_889486 [Arabidopsis lyrata subsp.
lyrata]
gi|297336225|gb|EFH66642.1| hypothetical protein ARALYDRAFT_889486 [Arabidopsis lyrata subsp.
lyrata]
Length = 500
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/527 (52%), Positives = 336/527 (63%), Gaps = 61/527 (11%)
Query: 31 DKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQA 90
D + + + + L + AVKDLLS VC RCIFRL ++ SV + H +
Sbjct: 32 DSKTRRVYETARSLHSGAVKDLLSLGVCERCIFRLVAVEAFDSDISSVSTSTLHSWLKSG 91
Query: 91 DLHQNIS-SVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSF 149
D S S IC CLGILQF + K+ +V+++S+ D+ I +LVK++ H+ DSF
Sbjct: 92 DGETGSSESSCSRICIVCLGILQFVFSDAKKELVKSDSSSDYVSRITDLVKQDRHEFDSF 151
Query: 150 SLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDV 209
LEVS+P TI+ENE L Y+K KY +E W + S KDALK L + L+ L
Sbjct: 152 GLEVSVPSTIMENERALLSYLKGKYSTEVWLQRDKFS----VKDALKVLLLDQLKASLGA 207
Query: 210 KCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVV 269
+ S+FHIRLTY++ AS Q E KRRK DA+N
Sbjct: 208 ESDSSSFHIRLTYTK--ASDEAQGASETTHESKRRKTDAEN------------------- 246
Query: 270 STTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNV 329
SN + +N +KV EPC C R PI+F GRY KYSRNV
Sbjct: 247 -----------GSNCISEN--------SFEKVYEPCIFSVHCNRMPIFFSGRYFKYSRNV 287
Query: 330 SQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQ 389
SQ+RWIID+ERMGEAS+EEIIGGNILP C GDSYKFHAAGREDIDVRMLGSGRPFL E+Q
Sbjct: 288 SQSRWIIDDERMGEASVEEIIGGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQ 347
Query: 390 NAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWIS 449
N+R++PSE +KE+E KIN E K L ++G+ L R GE KQY ALVWIS
Sbjct: 348 NSRQLPSEQSLKEVEEKINKSE------KKLSVLGNDA--LGRSGE----KQYVALVWIS 395
Query: 450 RPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFL 509
RPL+++DF +I SLKE +ILQKTP+RVLHRRSPL+REKII+WMK+EKI G S YFL
Sbjct: 396 RPLEEKDFNSIPSLKE----LKILQKTPVRVLHRRSPLDREKIIHWMKVEKIKGHSNYFL 451
Query: 510 LHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
LH+CTQAGTYIKEFVHGDLGRT PS+GSILGCRAEI+QLDVTDVKM
Sbjct: 452 LHLCTQAGTYIKEFVHGDLGRTTPSMGSILGCRAEIIQLDVTDVKMG 498
>gi|38345852|emb|CAD41060.2| OSJNBa0084K11.16 [Oryza sativa Japonica Group]
Length = 493
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 248/486 (51%), Positives = 329/486 (67%), Gaps = 17/486 (3%)
Query: 73 CSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFA 132
SS + H+L +N+S+ NIC +L D + + S D
Sbjct: 20 ASSFPPLHAIHHLLSVGFHTRRNLSTFLHNICSVTAHLL----SDDGVEPLRSVSPIDNV 75
Query: 133 VAI-AELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-S 190
+I +E V++EGHQ+D FSLE+S+P I N+ + LY+K KY S WF ++ S+ + S
Sbjct: 76 TSIISEAVQREGHQVDEFSLEISLPAVIAANDRAIRLYMKEKYGSANWFDEKIFSQQTMS 135
Query: 191 TKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKN 250
K+AL+ L +E ++VK G ++F IRLTY+ E S ++ + G ++RK ++++
Sbjct: 136 VKEALRILLVPSVEKQMNVKHGNNSFRIRLTYTHDEGSQKLLRLLPNDRG-RKRKTESRD 194
Query: 251 CLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECL 310
K T + ++S ++ K+ G+QD + + P +KV EPC L
Sbjct: 195 G----SSKRGSTDDDKQILSESDAFI--NKNLEGIQDQDFRSLFQLPPEKVLEPCHLVIS 248
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
C R+PIY GGRYLK SRNVSQ+ WIID+ERMGEAS+EEIIG N+ +C+GD YKFHAAGR
Sbjct: 249 CQRSPIYIGGRYLKLSRNVSQSCWIIDDERMGEASVEEIIGENVRAICKGDGYKFHAAGR 308
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
EDIDVRMLGSGRPFL E+ N R +PS V++I KIN E K VRV+NLK+VGS+ WT+
Sbjct: 309 EDIDVRMLGSGRPFLVEVLNVRSIPSATEVQQIADKINDSEKKHVRVRNLKLVGSEIWTM 368
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
MREGEAEKQKQYAAL+W SRPL D+D IS +K+ +I+QKTPIRVLHRRSPLER+
Sbjct: 369 MREGEAEKQKQYAALIWTSRPLTDDDLHNISLIKDM----EIVQKTPIRVLHRRSPLERK 424
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
+II+WM+I KI+G S Y+LLH+CTQAGTYIKEFVHGDLGRT+PS+G +L CRAEILQLDV
Sbjct: 425 RIIHWMEIAKISGGSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSVGVMLSCRAEILQLDV 484
Query: 551 TDVKMN 556
TDVKM+
Sbjct: 485 TDVKMD 490
>gi|297603166|ref|NP_001053554.2| Os04g0561700 [Oryza sativa Japonica Group]
gi|255675683|dbj|BAF15468.2| Os04g0561700, partial [Oryza sativa Japonica Group]
Length = 450
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/423 (55%), Positives = 307/423 (72%), Gaps = 12/423 (2%)
Query: 135 IAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKD 193
I+E V++EGHQ+D FSLE+S+P I N+ + LY+K KY S WF ++ S+ + S K+
Sbjct: 36 ISEAVQREGHQVDEFSLEISLPAVIAANDRAIRLYMKEKYGSANWFDEKIFSQQTMSVKE 95
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLD 253
AL+ L +E ++VK G ++F IRLTY+ E S ++ + G ++RK ++++
Sbjct: 96 ALRILLVPSVEKQMNVKHGNNSFRIRLTYTHDEGSQKLLRLLPNDRG-RKRKTESRDG-- 152
Query: 254 TVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFR 313
K T + ++S ++ K+ G+QD + + P +KV EPC L C R
Sbjct: 153 --SSKRGSTDDDKQILSESDAFI--NKNLEGIQDQDFRSLFQLPPEKVLEPCHLVISCQR 208
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+PIY GGRYLK SRNVSQ+ WIID+ERMGEAS+EEIIG N+ +C+GD YKFHAAGREDI
Sbjct: 209 SPIYIGGRYLKLSRNVSQSCWIIDDERMGEASVEEIIGENVRAICKGDGYKFHAAGREDI 268
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRMLGSGRPFL E+ N R +PS V++I KIN E K VRV+NLK+VGS+ WT+MRE
Sbjct: 269 DVRMLGSGRPFLVEVLNVRSIPSATEVQQIADKINDSEKKHVRVRNLKLVGSEIWTMMRE 328
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
GEAEKQKQYAAL+W SRPL D+D IS +K+ +I+QKTPIRVLHRRSPLER++II
Sbjct: 329 GEAEKQKQYAALIWTSRPLTDDDLHNISLIKDM----EIVQKTPIRVLHRRSPLERKRII 384
Query: 494 NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+WM+I KI+G S Y+LLH+CTQAGTYIKEFVHGDLGRT+PS+G +L CRAEILQLDVTDV
Sbjct: 385 HWMEIAKISGGSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSVGVMLSCRAEILQLDVTDV 444
Query: 554 KMN 556
KM+
Sbjct: 445 KMD 447
>gi|357165264|ref|XP_003580324.1| PREDICTED: LOW QUALITY PROTEIN: putative tRNA pseudouridine
synthase Pus10-like [Brachypodium distachyon]
Length = 450
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/425 (55%), Positives = 311/425 (73%), Gaps = 11/425 (2%)
Query: 135 IAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKD 193
+ + V++E +Q+D F LE+S+P + NE + L++K KY +E WFKD+ S+ + S K+
Sbjct: 35 VFQAVQRESYQLDEFFLEISLPAVVAANERAIRLHMKEKYGNENWFKDKIFSQQTMSVKE 94
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLD 253
AL+ L LE LDVK G ++F IRLTY+ +AS ++++ + + ++RK +++ D
Sbjct: 95 ALRLLLVPSLEKKLDVKHGNNSFRIRLTYTHDDASRKLKSLLPN-DRNRKRKTESREGTD 153
Query: 254 TVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFR 313
T ++ T +N ++S T+ K+ +QD E + P +KV +PC L C R
Sbjct: 154 TRRNS---TYEDNQILSETDSFI--HKTLECIQDQEFCSLFQLPPEKVFKPCHLVISCLR 208
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+PIY GGRYLK SRNVSQ+ WIID+ERMGEAS+EEIIG ++ +CRGD KFHAAGREDI
Sbjct: 209 SPIYIGGRYLKLSRNVSQSCWIIDDERMGEASVEEIIGEDVRTICRGDGCKFHAAGREDI 268
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRMLGSGRPFL E+ NAR +PS + V++I KINS E K VRV+NLK+V + W++MRE
Sbjct: 269 DVRMLGSGRPFLIEVLNARSIPSAIEVEQIAEKINSSEKKYVRVRNLKLVDREIWSMMRE 328
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
GEAEKQKQYAAL+W SR L D D Q IS + + +I+Q TPIRVLHRRSPLER++II
Sbjct: 329 GEAEKQKQYAALIWTSRSLTDVDLQKISGVNDM----EIVQNTPIRVLHRRSPLERKRII 384
Query: 494 NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+WM+IEK+ GSS Y+LLH+CTQAGTYIKEFVHGDLGRT+PSIG+ILGCRAEILQLDVTDV
Sbjct: 385 HWMEIEKVEGSSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGAILGCRAEILQLDVTDV 444
Query: 554 KMNCF 558
KM+
Sbjct: 445 KMDLL 449
>gi|242076776|ref|XP_002448324.1| hypothetical protein SORBIDRAFT_06g025270 [Sorghum bicolor]
gi|241939507|gb|EES12652.1| hypothetical protein SORBIDRAFT_06g025270 [Sorghum bicolor]
Length = 516
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 248/522 (47%), Positives = 334/522 (63%), Gaps = 40/522 (7%)
Query: 43 FLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCH-VLGEQADLHQNIS---- 97
F P AV LLS VC+RCI RL G CS S+ + + H L E D + S
Sbjct: 24 FPPLHAVHHLLSVGVCVRCILRLLGAYSSACSYASLTASVLHSFLEEHDDSMKGDSCPCL 83
Query: 98 SVEPNICRSCLGILQFTYCGDKERVVEN--ESACDFAVAIAELVKKEGHQIDSFSLEVSM 155
S+ C CLG+L + D+ N + + I+++V++EG+Q+D FSLE+S+
Sbjct: 84 SMNDAYCSVCLGVLLPAFHRDEGLETPNGISHIDNISSMISQVVQREGYQVDEFSLEISL 143
Query: 156 PPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKCGIS 214
PP I NE + LY+K+KY +E WFKD+ + + S K+AL+ + LE L + K G +
Sbjct: 144 PPVIAANERAIRLYMKQKYVNENWFKDKMFPQQTISVKEALRLLIAPSLEKLTNAKHGNN 203
Query: 215 TFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEV 274
+F IRL Y+ +AS ++ + + E ++RK D++N DT + + + ++E
Sbjct: 204 SFRIRLAYTHGDASQKLHSLLPN-EHSRKRKTDSRNGGDTSNEAHKRNSADGNNKQSSES 262
Query: 275 IPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRW 334
K+ G+QD E + P +KV +PC L C R+PI+ GGRYLK SRNVSQ+ W
Sbjct: 263 DSFIYKTLEGIQDQEFCNVFQLPPEKVFKPCHLVISCLRSPIFLGGRYLKLSRNVSQSCW 322
Query: 335 IIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREV 394
IID+ERMGEAS+E VRMLGSGRPFL E+ N R +
Sbjct: 323 IIDDERMGEASVE---------------------------VRMLGSGRPFLVEVLNVRSI 355
Query: 395 PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQD 454
PSE V++IE +IN+ E K VR++NLK+VG++ WT+MREGEAEKQKQY AL+W SR L +
Sbjct: 356 PSETEVQQIEERINNSEKKYVRIRNLKLVGNEIWTMMREGEAEKQKQYTALIWTSRDLTE 415
Query: 455 EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT 514
+D IS K+ +I+QKTPIRVLHRRSPLER++II+WM+IEK+AGSS Y+LLH+CT
Sbjct: 416 DDLHNISITKDM----EIVQKTPIRVLHRRSPLERKRIIHWMEIEKVAGSSTYYLLHLCT 471
Query: 515 QAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
QAGTYIKEFVHGDLGRT+PSIG+ILGCRAEILQLDVTDVKM+
Sbjct: 472 QAGTYIKEFVHGDLGRTHPSIGAILGCRAEILQLDVTDVKMD 513
>gi|8778607|gb|AAF79615.1|AC027665_16 F5M15.23 [Arabidopsis thaliana]
Length = 682
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 296/452 (65%), Gaps = 39/452 (8%)
Query: 111 LQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYV 170
L F + K+ +V+++S+ D+ I +LVK++ H+ DSF LEVS+P TI+ENE L Y+
Sbjct: 256 LFFVFSDVKKELVKSDSSSDYVARITDLVKQDRHEFDSFGLEVSVPSTIMENERALLSYL 315
Query: 171 KRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIR 230
K KY +E W + IS KDALK L + L+ L + S+FHIRLTY++ AS
Sbjct: 316 KGKYSTEVWLQRDKIS----VKDALKVLLLDQLKASLGAESDSSSFHIRLTYTK--ASDE 369
Query: 231 IQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEP 290
Q E KRRK DA+N + + + S V + + I + +
Sbjct: 370 AQGASETTHESKRRKTDAENGSNCISENS-FEKVYVCIFNPHIYIYIYICRTF------- 421
Query: 291 SETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEII 350
F L V EPC C R PI+F GRY KYSRNVSQ+RWIID+ERMGEAS+EEI+
Sbjct: 422 -----FVL--VYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERMGEASVEEIL 474
Query: 351 GGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSL 410
GGNILP C GDSYKFHAAGREDIDVRMLGSGRPFL E+QN+R++PSE +KE+E KIN
Sbjct: 475 GGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKS 534
Query: 411 ENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY 470
E KLV VK+LK +GSQ W +MREGEAEKQKQY ALVWISRPL+++DF +IS LKE
Sbjct: 535 EKKLVGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSISCLKEL---- 590
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMK---------IEKIAGSSQYFLLHMCTQAGTYIK 521
+ILQKTP+RVLHRRSPL+REKII+W+ +E+ A S ++ ++ QAGTYIK
Sbjct: 591 KILQKTPVRVLHRRSPLDREKIIHWLLQLLTHLIIILERWA-SFKFSIM----QAGTYIK 645
Query: 522 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
EFVHGDLGRT P + + R+ + DV V
Sbjct: 646 EFVHGDLGRTTPRMHELARVRSRYRKYDVVSV 677
>gi|414585881|tpg|DAA36452.1| TPA: hypothetical protein ZEAMMB73_773187 [Zea mays]
Length = 472
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/463 (46%), Positives = 294/463 (63%), Gaps = 17/463 (3%)
Query: 43 FLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNIS----- 97
F P AV LLS VC+RCI RL G CS + + + H E+ D ++I
Sbjct: 17 FPPLHAVHHLLSVGVCVRCILRLLGAYSSACSYACLTASVLHSFLEEHD--ESIKGGSCP 74
Query: 98 --SVEPNICRSCLGILQFTYCGDKERVVEN--ESACDFAVAIAELVKKEGHQIDSFSLEV 153
S+ C CLG+L T+ D+ N + + I++ V E +Q+D FSLE+
Sbjct: 75 CLSMNDAYCSVCLGVLLPTFHRDEGLETPNGISHIDNMSSVISQAVHGESYQVDEFSLEI 134
Query: 154 SMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKCG 212
S+PP I NE + LY+K+KY +E WFKD+ ++ + S K+AL+ + LE L++ K G
Sbjct: 135 SLPPVIAANERAVRLYMKQKYGNENWFKDKMFAQQTMSVKEALRLLIAPSLEKLMNAKHG 194
Query: 213 ISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTT 272
++F IRLTY+ +AS ++ + + E ++RK D++ D + + + + T+
Sbjct: 195 NNSFRIRLTYTHGDASQKLHSLLPN-EHSRKRKPDSRKGGDASNEAHKRNSADGNPIQTS 253
Query: 273 EVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQT 332
E KS G+QD E + P +KV +PC L C R+P Y GGRYLK SRNVSQ+
Sbjct: 254 ESDSFIYKSLEGIQDQEFCNAFQLPPEKVFKPCHLLISCLRSPTYLGGRYLKLSRNVSQS 313
Query: 333 RWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR 392
WIID+ERMGEAS+EEIIG N+ +CRGDS KFHAAGREDIDVRMLGSGRPFL E+ N R
Sbjct: 314 CWIIDDERMGEASVEEIIGENVRAICRGDSCKFHAAGREDIDVRMLGSGRPFLVEVLNVR 373
Query: 393 EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPL 452
+PSE V++IE +IN+ E K V V+NLK+V ++ WT+MREGEAEKQKQY AL+W SR L
Sbjct: 374 SIPSETEVQQIEERINNSEKKYVIVRNLKLVDNEIWTMMREGEAEKQKQYTALIWTSRDL 433
Query: 453 QDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
D+D IS +KE +I+QKTPIRVLHRRSPLER++II+W
Sbjct: 434 TDDDLHNISIMKEM----EIVQKTPIRVLHRRSPLERKRIIHW 472
>gi|168065040|ref|XP_001784464.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663989|gb|EDQ50726.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 425
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 268/425 (63%), Gaps = 15/425 (3%)
Query: 135 IAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDR-SISECSSTKD 193
I ++ +KEG+ D F LE S+P + + L LY+K+KY E+ F + + S K+
Sbjct: 11 IEQVARKEGYVFDDFCLEASVPAITVVRDRSLWLYLKKKYPKESMFAPQFETNSIVSLKE 70
Query: 194 ALKFALTNPLETLLDVKCGISTF-HIRLTYSRVEASIRIQNFVEKIEG-CKRRKVDAKNC 251
A+K+++ PLE++L K + I L Y S+ NF+ G KRR+
Sbjct: 71 AIKWSVIAPLESMLAAKFNSNALVRIALLYKH-STSLTELNFINHSGGDAKRRRRGHPAA 129
Query: 252 LDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLC 311
SV + + + + S P + + PC +C
Sbjct: 130 GLAAVAAVRTAEAGESVATVVRALAT-------MTGDTFSRHFSSPPPRASTPCDRSIMC 182
Query: 312 FRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
+R P++ + ++SRN+SQ+RW+ID+ERMGE S++E+IG I P +GDSYKFHAAGRE
Sbjct: 183 WRMPVFILSMFWQFSRNISQSRWMIDDERMGEGSVQEVIGNAIFPYYKGDSYKFHAAGRE 242
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
D+DVRMLG GRPFL EI NAR +PS + ++E +INSL+ V+V+ L+ VG + +M
Sbjct: 243 DMDVRMLGPGRPFLLEILNARNIPSSSEIAKLEGEINSLKEGWVKVRELRQVGVEACAIM 302
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
REGEAEKQK+YAA+VW+SRP+ EDF+ +SSLKE ++ QKTP+RVLHRRSPL R +
Sbjct: 303 REGEAEKQKEYAAVVWLSRPVTSEDFEALSSLKEL----ELQQKTPVRVLHRRSPLIRPR 358
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
II+WM+ E+I S YFLL +CTQAGTYIKEFVHGD GRT P++GSIL C+A+ILQLDV
Sbjct: 359 IIHWMRCEEIKDSPNYFLLFLCTQAGTYIKEFVHGDFGRTCPNVGSILNCQADILQLDVM 418
Query: 552 DVKMN 556
DVKM+
Sbjct: 419 DVKMD 423
>gi|302775462|ref|XP_002971148.1| hypothetical protein SELMODRAFT_441456 [Selaginella moellendorffii]
gi|300161130|gb|EFJ27746.1| hypothetical protein SELMODRAFT_441456 [Selaginella moellendorffii]
Length = 498
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 310/538 (57%), Gaps = 58/538 (10%)
Query: 34 EKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICS-SLSVKSLLCHVLGEQADL 92
E L +A+ LP ++DLL C C R ++ + S S+ + +G L
Sbjct: 2 EALFREALLALPQAPLRDLLRVGACSLCAMRFLSVRGRVYSQSVPASPAILAEIGNGDGL 61
Query: 93 HQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLE 152
+ SS + C C GILQ G +A+ E ++KEGH+ FSLE
Sbjct: 62 ESDRSSA--SCCTVCQGILQSAGVG---------------LAVLEAIQKEGHEFCDFSLE 104
Query: 153 VSMPPTILENENKLSLYVKRKYRSEAWFKDRSISEC-SSTKDALKFALTNPLETLL---- 207
V++P L E L Y+++++ + FK +EC S K+A+K+ +E L
Sbjct: 105 VTVPSATLVRERSLWCYLRKEHPED--FKAEDPNECIVSLKEAVKWTFGPQIEAALVKNS 162
Query: 208 -----DVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAIT 262
V S FHI L + +S IQ F+ + G D+K V+ +I
Sbjct: 163 FLGMGKVMDKNSNFHISLVFKHANSSSEIQ-FLSDLSGG-----DSKRKRGPVEAGESIA 216
Query: 263 GVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRY 322
V+ S+ S SS+ + P P +++ PC L C + I+ GRY
Sbjct: 217 AVQRSLASI---------SSDAFARHYPC-----PPPQLDTPCELVSSCRKDAIFVVGRY 262
Query: 323 LKYSRNVSQTRWIIDEERMGEASIE----EIIGGNILPMCRGDSYKFHAAGREDIDVRML 378
LKYSR++SQ+ W I E+R+G+ S++ EIIG I P + DSYKFHAAGREDIDVRML
Sbjct: 263 LKYSRSISQSPWTIQEDRIGDGSVQASACEIIGDVIFPHFKADSYKFHAAGREDIDVRML 322
Query: 379 GSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEK 438
GSGRPFL EI NAR + + ++E INS ++ V+VK LK G++ WT+MR+GEA+K
Sbjct: 323 GSGRPFLLEILNARTCSKQEELLKLEHAINSNKDGWVKVKGLKEAGNEVWTIMRQGEADK 382
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKI 498
QK+Y A+VW+SRP+ + DF T+S+ KE +I QKTP+RVLHRRSPL R +II+WM+
Sbjct: 383 QKEYTAVVWLSRPVTEADFTTLSNSKE----LEIQQKTPVRVLHRRSPLVRPRIIHWMRC 438
Query: 499 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
E + SS YFLLH+CTQAGTY+KEFVHGDLGRT P++GS+L C AEIL LDVT+VKM+
Sbjct: 439 EALHDSSCYFLLHLCTQAGTYVKEFVHGDLGRTYPNVGSLLDCDAEILCLDVTNVKMD 496
>gi|449533026|ref|XP_004173478.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like, partial
[Cucumis sativus]
Length = 301
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 182/333 (54%), Positives = 221/333 (66%), Gaps = 55/333 (16%)
Query: 168 LYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEA 227
LY+KRKY SE WF+ + C S KDALK +T PLETLLD K S IRLTYS +A
Sbjct: 1 LYLKRKYGSEQWFQGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKA 60
Query: 228 SIRIQNFVEK-IEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQ 286
S N +++ +G K RK+ V + E P D + N +
Sbjct: 61 SNSNGNSIKRNQDGFKMRKI----------------------VGSDE--PSDISNCNSVA 96
Query: 287 DN--EPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA 344
D+ PS+ FP + YSRNVSQTRW+I EERMGEA
Sbjct: 97 DDCINPSQEVVFPQET------------------------YSRNVSQTRWVIGEERMGEA 132
Query: 345 SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIE 404
S+EEI+G NILP CRGDSYKFHAAGRED+DVRMLGSGRPFL EIQNAR +PSE+++ EI+
Sbjct: 133 SVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQ 192
Query: 405 SKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLK 464
SKINS ENKL+ V+NLK+VGS+GW L++EGEAEKQKQYAALVW SRPL+D D +ISSLK
Sbjct: 193 SKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLLSISSLK 252
Query: 465 ETVRCYQILQKTPIRVLHRRSPLEREKIINWMK 497
+ +ILQ+TPIRVLHRRSPLEREKII+W++
Sbjct: 253 D----LKILQRTPIRVLHRRSPLEREKIIHWLE 281
>gi|302757029|ref|XP_002961938.1| hypothetical protein SELMODRAFT_76713 [Selaginella moellendorffii]
gi|300170597|gb|EFJ37198.1| hypothetical protein SELMODRAFT_76713 [Selaginella moellendorffii]
Length = 327
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/288 (54%), Positives = 206/288 (71%), Gaps = 6/288 (2%)
Query: 269 VSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRN 328
V E I ++S + + + + P +VN PC L C + I+ GRYLKYSR+
Sbjct: 44 VEAGESIAAVQRSLASISSDAFARHYPCPPPQVNTPCELVSSCRKDAIFVVGRYLKYSRS 103
Query: 329 VSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEI 388
+SQ+ W I E+R+G+ S EIIG I P + DSYKFHAAGREDIDVRMLGSGRPFL EI
Sbjct: 104 ISQSPWTIQEDRIGDGS--EIIGDVIFPHFKADSYKFHAAGREDIDVRMLGSGRPFLLEI 161
Query: 389 QNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWI 448
NAR + + ++E INS ++ V+VK LK G++ WT+MR+GEA+KQK+Y A+VW+
Sbjct: 162 LNARTCSKQEELLKLEHAINSNKDGWVKVKGLKEAGNEVWTVMRQGEADKQKEYTAVVWL 221
Query: 449 SRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYF 508
SRP+ + DF T+S+ KE +I QKTP+RVLHRRSPL R +II+WM+ E + SS YF
Sbjct: 222 SRPVTEADFTTLSNSKE----LEIQQKTPVRVLHRRSPLVRPRIIHWMRCEALHDSSCYF 277
Query: 509 LLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
LLH+CTQAGTY+KEFVHGDLGRT P++GS+L C AEIL LDVT+VKM+
Sbjct: 278 LLHLCTQAGTYVKEFVHGDLGRTYPNVGSLLDCDAEILCLDVTNVKMD 325
>gi|207113130|ref|NP_653310.2| putative tRNA pseudouridine synthase Pus10 [Homo sapiens]
gi|121942830|sp|Q3MIT2.1|PUS10_HUMAN RecName: Full=Putative tRNA pseudouridine synthase Pus10; AltName:
Full=Coiled-coil domain-containing protein 139; AltName:
Full=tRNA pseudouridine 55 synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|75516696|gb|AAI01681.1| Pseudouridylate synthase 10 [Homo sapiens]
gi|75516970|gb|AAI01707.1| Pseudouridylate synthase 10 [Homo sapiens]
gi|119620429|gb|EAX00024.1| hypothetical protein FLJ32312, isoform CRA_c [Homo sapiens]
Length = 529
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|158256890|dbj|BAF84418.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|158431130|pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 108 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 155
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 156 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 212
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 213 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 251
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 252 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 311
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 312 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 371
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 372 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 430
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAG
Sbjct: 431 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 484
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 485 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 523
>gi|332226588|ref|XP_003262472.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 1
[Nomascus leucogenys]
Length = 529
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/459 (35%), Positives = 251/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C ER DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFC---ER--------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|426335671|ref|XP_004029336.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Gorilla
gorilla gorilla]
Length = 531
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 249/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 109 NVCNICLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 156
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 157 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 213
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 214 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 252
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 253 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 312
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 313 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 372
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 373 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 431
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + + +F LH+ TQAG
Sbjct: 432 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMETQYV--DEHHFRLHLKTQAG 485
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 486 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 524
>gi|297667570|ref|XP_002812050.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Pongo
abelii]
Length = 529
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 249/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|114577533|ref|XP_515497.2| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 4
[Pan troglodytes]
gi|332813228|ref|XP_003309074.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Pan
troglodytes]
gi|397521670|ref|XP_003830913.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Pan
paniscus]
gi|410212110|gb|JAA03274.1| pseudouridylate synthase 10 [Pan troglodytes]
gi|410288884|gb|JAA23042.1| pseudouridylate synthase 10 [Pan troglodytes]
gi|410352613|gb|JAA42910.1| pseudouridylate synthase 10 [Pan troglodytes]
Length = 529
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 249/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|432843256|ref|XP_004065591.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Oryzias
latipes]
Length = 535
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 52/478 (10%)
Query: 87 GEQADLHQNISS--VEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGH 144
G+ AD ++ S E +C +CLGILQ CG + AV IA+ VK + +
Sbjct: 95 GDHADPSEDEKSNLGESQVCVACLGILQ-DLCGTNQ-----------AVKIADTVKAQKY 142
Query: 145 QIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLE 204
+ DS L +S+P + E+ L+VK++ R + D+ + K+A K+ + + +
Sbjct: 143 EFDSLVLSISLPAQLCVREHSCWLHVKKEVREKGLVLDKD--DVIQVKEAFKWIMQSLVA 200
Query: 205 TLLD--VKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAIT 262
L G S F + + ++ E +F+ K+ +C K+K
Sbjct: 201 KELGGVAVVGKSGFEVGVEFTHPETDSDC-HFLAKV---------CPDCFKPTKNK---- 246
Query: 263 GVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRL---ECLCFRTPIYFG 319
SV + V+ EK S+ ++P C + C ++
Sbjct: 247 ---QSVFTRMAVVKALEKISDD------KFLKQYPCPPARPACSCVPQDVQCLHVSVFIA 297
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
GRY K+ R++ QT W+ID ER E+S+EE+I IL R + F ++GRED+DVR LG
Sbjct: 298 GRYNKFCRSLPQTPWLIDGERRMESSVEELIAAPILTAFRAGGFNFSSSGREDVDVRTLG 357
Query: 380 SGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEK 438
+GRPF E+QN R S+L +KE++ IN +K +RV++L+IV + M+EGE EK
Sbjct: 358 NGRPFAMELQNPHRSRLSKLEMKELQETINKSSDK-IRVRDLQIVTREAMGRMKEGEEEK 416
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKI 498
K Y ALVW RP+Q ED I +K+ + QKTP+RVLHRR+ R+++I+ M
Sbjct: 417 TKSYTALVWTQRPIQKEDIGFIDEIKDLT----LGQKTPLRVLHRRALAVRQRVIHSMNA 472
Query: 499 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ +F L + TQAGTYIKEFVHGD GRT P++ +L +IL+LDV V ++
Sbjct: 473 RYV--DDHHFYLRLKTQAGTYIKEFVHGDFGRTKPNLCELLKTDTDILELDVESVDVD 528
>gi|345777354|ref|XP_538504.3| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Canis lupus
familiaris]
Length = 532
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 182/554 (32%), Positives = 279/554 (50%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVPNPPPKKIRLQ 74
Query: 88 EQAD-------LHQN----ISSVEP----------NICRSCLGILQFTYCGDKERVVENE 126
E D L QN +S++E N+C CLGILQ +C +KE
Sbjct: 75 ELEDGIDRIDNLSQNGEAKVSNIEDGHIASKNSNLNVCNVCLGILQ-EFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + VS PP + E+ SL VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREHATSLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPECFKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKSYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFHLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|16552394|dbj|BAB71300.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 249/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLLEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|395829710|ref|XP_003787989.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Otolemur
garnettii]
Length = 525
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 176/547 (32%), Positives = 277/547 (50%), Gaps = 85/547 (15%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LL+ C RC+FR G+ L + LL + L
Sbjct: 15 LLNTGTCPRCVFRFCGVDFHAPYKLPYEELLNELQKFLETEKDELILEVPNPPPKKIRLQ 74
Query: 88 EQAD-----LHQN----ISSVEP-----NICRSCLGILQFTYCGDKERVVENESACDFAV 133
E D L+QN +S + P N+C CLGILQ +C DF
Sbjct: 75 ELEDERLDSLNQNGKGSLSVIAPENSNLNVCNVCLGILQ-EFCEK-----------DFIK 122
Query: 134 AIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKD 193
+ + V+ G + + VS PP + E+ L VK++ ++ R+ + K+
Sbjct: 123 KVCQKVEASGFEFTNLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN--DIVQLKE 180
Query: 194 ALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNC 251
A K+ +T+PL E L G S F + + ++ E +E C +C
Sbjct: 181 AYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLGTLCPDC 229
Query: 252 LDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LECL 310
K+K SV + V+ K+ N +++ + + P C LE
Sbjct: 230 FKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAVCTVLEIE 278
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F ++GR
Sbjct: 279 CAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISHHLLTVFKAESFNFSSSGR 338
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
ED+DVR LG+GRPF E+ N V + +KE++ KIN NK ++V++L++V +
Sbjct: 339 EDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINKSSNK-IQVRDLQLVTREAIG 397
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLHRR R
Sbjct: 398 HMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRPLAVR 453
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
++I++M+ + + +F L++ TQAGTYIKEFVHGD GRT P+IGS++ A+IL+LD
Sbjct: 454 TRVIHFMETHYV--DAHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELD 511
Query: 550 VTDVKMN 556
V V ++
Sbjct: 512 VESVDVD 518
>gi|296223780|ref|XP_002757770.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 1
[Callithrix jacchus]
gi|296223782|ref|XP_002757771.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 2
[Callithrix jacchus]
Length = 529
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 247/459 (53%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNICLGILQ-EFCEK-----------DFVKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAKCPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKATCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W + +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTDKVIQRKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMESHYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|307105644|gb|EFN53892.1| hypothetical protein CHLNCDRAFT_136052 [Chlorella variabilis]
Length = 565
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 162/245 (66%), Gaps = 6/245 (2%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R P++ GGRYLK R + Q+ W ID +R GE S++E I +LP R DSYK +AGRED
Sbjct: 315 RRPLHVGGRYLKLRRGIPQSPWFIDGQRKGEGSVQEAIERAVLPAFRADSYKMVSAGRED 374
Query: 373 IDVRMLGSGRPFLFEIQNARE-VPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
IDVRMLGSGRPF+ EIQNAR VP+ ++ +E+ + V + L + +
Sbjct: 375 IDVRMLGSGRPFILEIQNARRAVPAPDQLQRMEAAVLEATAGGVAARGLHCASASQLAAL 434
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+EGE +KQK Y A+ W+ RPL + D ++L E+ R +ILQ+TP+RVLHRR+ LER +
Sbjct: 435 KEGEQDKQKSYMAVCWLPRPLTEAD----AALLESTRELEILQQTPVRVLHRRANLERPR 490
Query: 492 IINWMKIEKIAGS-SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
++ M ++AG + YF L + QAGTYIKEFVHGDL R+ PS+G +LGC+A+IL LDV
Sbjct: 491 TVHEMHAMRLAGQPAGYFALRLRAQAGTYIKEFVHGDLSRSRPSLGDLLGCKAQILTLDV 550
Query: 551 TDVKM 555
+ M
Sbjct: 551 LKIHM 555
>gi|402890971|ref|XP_003908739.1| PREDICTED: LOW QUALITY PROTEIN: putative tRNA pseudouridine
synthase Pus10 [Papio anubis]
Length = 529
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 177/551 (32%), Positives = 270/551 (49%), Gaps = 89/551 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKKIRLQ 74
Query: 88 EQADLHQNIS------------------SVEPNICRSCLGILQFTYCGDKERVVENESAC 129
E D N+S + N+C CLGILQ +C
Sbjct: 75 ELEDSIDNLSXNGEGRISVSQDGSIASKNSNLNVCNVCLGILQ-EFCEK----------- 122
Query: 130 DFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS 189
DF + + V+ G + S VS PP + E+ L VK++ ++ R +
Sbjct: 123 DFVKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRD--DIV 180
Query: 190 STKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVD 247
K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 QLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLAAI 229
Query: 248 AKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR- 306
+C K+K SV + V+ K+ N +++ + + P C
Sbjct: 230 CPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFLKQFPCPPNSPKAVCTV 278
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 279 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 338
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 339 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 397
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W + +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 398 EAIGHMKEGEEEKTKTYSALIWTDKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 453
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I+ M+ + + +F L + TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 454 LAVRARVIHSMETQYV--DEHHFRLRLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 511
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 512 LELDVESVDVD 522
>gi|59006617|emb|CAI46123.1| hypothetical protein [Homo sapiens]
Length = 526
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 249/457 (54%), Gaps = 46/457 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLT 221
E+ L VK++ ++ R + K+A K+ +T+PL + ++ I + +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSE-ELGVPIDGKEVSVV 210
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
++ E +E C +C K+K SV + V+ K+
Sbjct: 211 FAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM----KA 249
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
N +++ + + P C LE C ++ GRY KYSRN+ QT WIID ER
Sbjct: 250 LNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGER 309
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 KLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQE 369
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D +
Sbjct: 370 IKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEF 428
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAGTY
Sbjct: 429 LNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAGTY 482
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 483 IKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 519
>gi|109102994|ref|XP_001115343.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like isoform
1 [Macaca mulatta]
gi|109102996|ref|XP_001115357.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like isoform
2 [Macaca mulatta]
gi|355565715|gb|EHH22144.1| hypothetical protein EGK_05357 [Macaca mulatta]
Length = 529
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 177/551 (32%), Positives = 270/551 (49%), Gaps = 89/551 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKKIRLQ 74
Query: 88 EQADLHQNIS------------------SVEPNICRSCLGILQFTYCGDKERVVENESAC 129
E D N+S + N+C CLGILQ +C
Sbjct: 75 ELEDSIDNLSQNGEGRISLSQDGSIASKNSNLNVCNVCLGILQ-EFCEK----------- 122
Query: 130 DFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS 189
DF + + V+ G + S VS PP + E+ L VK++ ++ R +
Sbjct: 123 DFVKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRD--DIV 180
Query: 190 STKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVD 247
K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 QLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLAAI 229
Query: 248 AKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR- 306
+C K+K SV + V+ K+ N +++ + + P C
Sbjct: 230 CPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFLKQFPCPPNSPKAVCTV 278
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 279 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 338
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 339 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 397
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W + +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 398 EAIGHMKEGEEEKTKTYSALIWTDKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 453
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I+ M+ + + +F L + TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 454 LAVRARVIHSMETQYV--DEHHFRLRLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 511
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 512 LELDVESVDVD 522
>gi|355751338|gb|EHH55593.1| hypothetical protein EGM_04833 [Macaca fascicularis]
Length = 529
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 177/551 (32%), Positives = 270/551 (49%), Gaps = 89/551 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNKLQKFLETEKDELILEVMNPPPKKIRLQ 74
Query: 88 EQADLHQNIS------------------SVEPNICRSCLGILQFTYCGDKERVVENESAC 129
E D N+S + N+C CLGILQ +C
Sbjct: 75 ELEDSIDNLSQNGEGRISLSQDGSIASKNSNLNVCNVCLGILQ-EFCEK----------- 122
Query: 130 DFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS 189
DF + + V+ G + S VS PP + E+ L VK++ ++ R +
Sbjct: 123 DFVKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEVGKQSLSLGRD--DIV 180
Query: 190 STKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVD 247
K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 QLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLAAI 229
Query: 248 AKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR- 306
+C K+K SV + V+ K+ N +++ + + P C
Sbjct: 230 CPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFLKQFPCPPNSPKAVCTV 278
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 279 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 338
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 339 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 397
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W + +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 398 EAIGHMKEGEEEKTKTYSALIWTDKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 453
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I+ M+ + + +F L + TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 454 LAVRARVIHSMETQYV--DEHHFRLRLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 511
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 512 LELDVESVDVD 522
>gi|431912668|gb|ELK14686.1| Putative tRNA pseudouridine synthase Pus10 [Pteropus alecto]
Length = 532
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + ++ VS PP +
Sbjct: 110 NVCNVCLGILQ-GFCEK-----------DFIKKVCQKVEASGFEFNNLVFSVSFPPQLSV 157
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETL-LDVKC-GISTFHIR 219
E+ L VK++ ++ R+ + K+A K+ +T+PL T L V G S F +
Sbjct: 158 REHAAWLLVKQEMGKQSLSLGRN--DIVQLKEAYKW-ITHPLFTEELGVPIDGKSLFEVS 214
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C + +C K+K SV + V+
Sbjct: 215 VVFAHPET----------VEDCHFLRAICPDCFKPAKNKQ-------SVFTRMAVM---- 253
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 254 KALNKIKEEDFCRQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 313
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+ E+I G++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 314 ERKLESSVGELISGHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 373
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 374 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 432
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M E +F L++ TQAG
Sbjct: 433 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRTRLIHSM--ETCYMDEHHFRLYLKTQAG 486
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 487 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 525
>gi|348533371|ref|XP_003454179.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Oreochromis niloticus]
Length = 542
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 238/459 (51%), Gaps = 47/459 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ CG + AV I E VK ++ D+ L VS+P +
Sbjct: 119 VCVVCLGILQ-ELCGTTQ-----------AVKITEAVKAGNYEFDTLVLSVSLPAQLCVR 166
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLD---VKCGISTFHIR 219
E+ L+VK++ R + ++ + K+A K+ + + L V +S F +
Sbjct: 167 EHSCWLHVKKEVREKGLVLNKD--DVIQVKEAFKWIMQGMVAKELGGTAVVTKVSPFEVS 224
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E C +C K+K ++ +VV E IP
Sbjct: 225 VEFTHSETDA----------DCHFLAATCPDCFKPTKNKQSVF-TRMAVVKALEKIP--- 270
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
D + + + P K+ C E C R ++ GRY K+ R++ QT W+ID
Sbjct: 271 -------DGKFLKHYPCPPKQPTSSCSPQEVQCLRVSVFVAGRYNKFCRSLPQTPWVIDG 323
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I IL R D + F ++GRED+DVR LG+GRPF E+ N + S+
Sbjct: 324 ERRMESSVEELIAAPILSAFRADGFNFSSSGREDVDVRTLGNGRPFAMELLNPHKSRFSK 383
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+K+++ IN +K ++V++L+IV + + M+EGE EK K Y ALVW +P+Q ED
Sbjct: 384 EQMKQLQETINQSSDK-IKVRDLQIVTREAMSRMKEGEEEKTKSYTALVWTQKPIQREDI 442
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
I +K+ + QKTP+RVLHRR+ R++ I+ M + S +F L + TQAG
Sbjct: 443 SFIDDIKDLT----LDQKTPLRVLHRRALAVRQRAIHSMSTRFL--DSHHFYLRLKTQAG 496
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRTNP++ +L +IL+LDV V ++
Sbjct: 497 TYIKEFVHGDFGRTNPNLCQLLKTNTDILELDVESVDVD 535
>gi|301783577|ref|XP_002927203.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Ailuropoda melanoleuca]
Length = 532
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 179/554 (32%), Positives = 275/554 (49%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLEIEKDELVLEVPNPPPKKIRLQ 74
Query: 88 EQAD-------LHQN----ISSVEP----------NICRSCLGILQFTYCGDKERVVENE 126
E D L QN +S +E N+C CLGILQ +C +KE
Sbjct: 75 ELEDGIDGIDNLSQNGEGRVSVIEDGSIASKSSNLNVCNVCLGILQ-EFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C K+K ++ + + T++ D + N P
Sbjct: 230 RAICPDCFKPAKNKQSVFTRMAVMKALTKIKEEDFRKQFPCPPNSPKAV----------- 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKSYSALIWTNKVIQKKDIEFLNDIKD----LKIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFHLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|395507997|ref|XP_003758302.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Sarcophilus
harrisii]
Length = 529
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 161/459 (35%), Positives = 244/459 (53%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N C CLGILQ +C K F + + V+ G++ + VS PP +
Sbjct: 107 NACNICLGILQ-EFCEKK-----------FIKKVCQKVESSGYEFTNLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ + R + K+A K+ +++PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQGLSLGRD--DIVQLKEAYKW-ISHPLFSEELGVPVDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E E C +C K+K SV + V+
Sbjct: 212 VIFAHPETD----------EDCHFLSTSCPDCFKPAKNK-------QSVFTRMAVV---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ + ++D++ + P C +E C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALDKIKDDDFRKKFPCPPNLPKAFCSAVEIQCAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I +L + + +S+ F ++GRED+DVR LG+GRPF E+ N R V +
Sbjct: 311 ERKLESSVEELISSQLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAVELVNPRRVQFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN +K ++V++L++V + M+EGE EK K Y+ALVW + +Q +D
Sbjct: 371 QDIKELQQKINISSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALVWTDKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ + LK+ QI QKTP+RVLHRR R +II+ M+ I +F LH+ TQAG
Sbjct: 430 EFLDDLKD----LQINQKTPLRVLHRRPLAIRVRIIHTMETHYI--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNGTADILELDVESVDVD 522
>gi|149727553|ref|XP_001495391.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Equus
caballus]
Length = 529
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 179/551 (32%), Positives = 274/551 (49%), Gaps = 89/551 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV-------------------------- 85
LLS C RCIFR G+ L K LL +
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVPNPPLKKIRLQ 74
Query: 86 -----LGEQADLHQN----ISSVEP-------NICRSCLGILQFTYCGDKERVVENESAC 129
+ +L QN +S +E NIC CLGILQ +C +KE
Sbjct: 75 DLEDGIDGNDNLSQNGEGSVSVIEDGSVNSNLNICNVCLGILQ-EFC-EKE--------- 123
Query: 130 DFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECS 189
F + + V+ G + + VS PP + E L VK++ ++ R+ +
Sbjct: 124 -FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREYAAWLLVKQEMGKQSLSLGRN--DIV 180
Query: 190 STKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVD 247
K+A K+ +T+PL E L G S F + + ++ E +E C +
Sbjct: 181 QLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLRAI 229
Query: 248 AKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR- 306
+C K+K SV + V+ K+ N +++ + + P C
Sbjct: 230 CPDCFKPAKNKQ-------SVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAVCTV 278
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + +S+ F
Sbjct: 279 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLTTFKAESFNFS 338
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 339 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 397
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W ++ +Q +D ++ +K+ +I QKTP+RVLHRR
Sbjct: 398 EAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIDFLNDVKD----LKIDQKTPLRVLHRRP 453
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 454 LAVRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 511
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 512 LELDVESVDVD 522
>gi|426223629|ref|XP_004005977.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Ovis aries]
Length = 532
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 179/554 (32%), Positives = 273/554 (49%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLSELQKFLEAEEDELVSEIPNPPPKKIRLQ 74
Query: 88 EQADLHQNISSVEPN---------------------ICRSCLGILQFTYCGDKERVVENE 126
E D + S+ N +C CLGILQ +C +KE
Sbjct: 75 EPEDQIDGMDSLSQNGEGKLSVTEDGSSSSKNSNLNVCNVCLGILQ-DFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + L VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLKVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ +I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LKIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M E +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSM--ETCYVDEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|410954861|ref|XP_003984078.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Felis catus]
Length = 532
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 251/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C +KE F + + V+ G + + VS PP +
Sbjct: 110 NVCNVCLGILQ-EFC-EKE----------FIKKVCQKVEASGFEFTNLVFSVSFPPQLSV 157
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ + R+ + K+A K+ +T+PL E L G S F +
Sbjct: 158 REHAAWLLVKQEMGKQNLSLGRN--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 214
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C + +C K+K SV + V+
Sbjct: 215 VIFAHPET----------VEDCHFLRAICPDCFKPAKNKQ-------SVFTRMAVM---- 253
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 254 KALNKIKEEDFRKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 313
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 314 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 373
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 374 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKSYSALIWTNKAIQKKDI 432
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R +II+ M+ + +F L++ TQAG
Sbjct: 433 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRTRIIHSMETRYV--DEHHFHLYLKTQAG 486
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 487 TYIKEFVHGDFGRTKPNIGSLMNMTADILELDVESVDVD 525
>gi|149044808|gb|EDL97994.1| similar to RIKEN cDNA 4933435A13, isoform CRA_a [Rattus norvegicus]
Length = 528
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/550 (32%), Positives = 273/550 (49%), Gaps = 88/550 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLC-----------HVLGEQAD-------LH 93
LL C RCIFR G+ +P K LL ++ E D LH
Sbjct: 15 LLRSGTCPRCIFRFCGVDLPAPYKRPYKELLDDLQTFLESENRELILEGPDPPLKKIRLH 74
Query: 94 Q--------------------NISSVEPN---ICRSCLGILQFTYCGDKERVVENESACD 130
+ N+++ +P+ +C CLGILQ +C D
Sbjct: 75 EDGVDTLSANGEEGVSVTEDENMAATKPSNWRVCNVCLGILQ-GFCEK-----------D 122
Query: 131 FAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSS 190
F + + V+ G + S L VS PP + E+ L VK++ ++ R+ +
Sbjct: 123 FITEVCQKVEASGFEFTSVVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN--DVVQ 180
Query: 191 TKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDA 248
K+A K+ +T+PL E L G S F + + ++ E ++ C
Sbjct: 181 LKEAYKW-ITHPLFSEELGVPTDGKSLFEVSVVFAHPET----------LQDCHFLGEVC 229
Query: 249 KNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-L 307
+C K+K SV + V+ K+ + +++ + P C L
Sbjct: 230 PDCFKPAKNK-------QSVFTRMAVL----KALSRIKEEDFLTQFPCPPDSPKTICTVL 278
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F +
Sbjct: 279 EVECTHGAVFVAGRYNKYSRNLPQTPWIIDGERKMESSVEELISDHLLAVFKAESFNFSS 338
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
+GRED+DVR LG+GRPF E+ N V + +KE++ KIN +K ++V++L++V +
Sbjct: 339 SGREDVDVRTLGNGRPFAVELLNPHRVHFTSQEIKELQQKINKSSDK-IQVRDLQLVTRE 397
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSP 486
M+EGE EK K Y+AL+W +R +Q +D + LK+ +I QKTP+RVLHRR
Sbjct: 398 AIGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKD----LKIDQKTPLRVLHRRPL 453
Query: 487 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 546
R + I+ MK + +F LH+ TQAGTYIKEFVHGD GRT P+IGS++ A+I+
Sbjct: 454 AVRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADIV 511
Query: 547 QLDVTDVKMN 556
+LDV V ++
Sbjct: 512 ELDVESVDVD 521
>gi|281354340|gb|EFB29924.1| hypothetical protein PANDA_016963 [Ailuropoda melanoleuca]
Length = 520
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 178/548 (32%), Positives = 272/548 (49%), Gaps = 92/548 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLEIEKDELVLEVPNPPPKKIRLQ 74
Query: 88 EQAD-------LHQN----ISSVEP----------NICRSCLGILQFTYCGDKERVVENE 126
E D L QN +S +E N+C CLGILQ +C +KE
Sbjct: 75 ELEDGIDGIDNLSQNGEGRVSVIEDGSIASKSSNLNVCNVCLGILQ-EFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C K+K ++ + + T++ D + N P
Sbjct: 230 RAICPDCFKPAKNKQSVFTRMAVMKALTKIKEEDFRKQFPCPPNSPKAV----------- 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKSYSALIWTNKVIQKKDIEFLNDIKD----LKIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFHLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVT 511
Query: 543 AEILQLDV 550
A+IL+LDV
Sbjct: 512 ADILELDV 519
>gi|440911571|gb|ELR61223.1| Putative tRNA pseudouridine synthase Pus10 [Bos grunniens mutus]
Length = 532
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 178/554 (32%), Positives = 273/554 (49%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLRELQKFLEAEEDESVSEVPNPPPKKIRLQ 74
Query: 88 EQADLHQNISSVEPN---------------------ICRSCLGILQFTYCGDKERVVENE 126
E D + S+ N +C CLGILQ +C +KE
Sbjct: 75 EPEDQIDGMDSLSQNGEGKLSVTEDGSSSSKNSNLNVCNVCLGILQ-DFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + L VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFCKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLKVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LNIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|332205941|ref|NP_001193766.1| putative tRNA pseudouridine synthase Pus10 [Bos taurus]
Length = 532
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 178/554 (32%), Positives = 273/554 (49%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLRELQKFLEAEEDELVSEVPNPPPKKIRLQ 74
Query: 88 EQADLHQNISSVEPN---------------------ICRSCLGILQFTYCGDKERVVENE 126
E D + S+ N +C CLGILQ +C +KE
Sbjct: 75 EPEDQIDGMDSLSQNGEGKLSVTEDGSSSSKNSNLNVCNVCLGILQ-DFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + L VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPDCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFCKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLKVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LNIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|311252565|ref|XP_003125155.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 1
[Sus scrofa]
gi|335285431|ref|XP_003354855.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 2
[Sus scrofa]
gi|335285433|ref|XP_003354856.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 3
[Sus scrofa]
Length = 532
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 179/554 (32%), Positives = 275/554 (49%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ V L K LL + L
Sbjct: 15 LLSTGTCARCIFRFCGVDVHAPYKLPYKELLNELQKFLETENDELASEVPNPPPKKIRLQ 74
Query: 88 EQAD-------LHQN----ISSVEP----------NICRSCLGILQFTYCGDKERVVENE 126
E D L QN +S +E N+C CLGILQ +C E
Sbjct: 75 ELEDGIDGMDNLGQNGEGKLSVIEDGSMASKNSNLNVCNVCLGILQ-DFC---------E 124
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
A F + + V+ G + + VS PP + E+ L VK++ ++ R
Sbjct: 125 KA--FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRD-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPECFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLTVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N + + +KE++ +IN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTSQEIKELQQRINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ +I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LKIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R ++I+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRLIHSMETHYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|224047464|ref|XP_002196768.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Taeniopygia
guttata]
Length = 534
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 161/459 (35%), Positives = 239/459 (52%), Gaps = 49/459 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C DF + + V +Q SF VS+PP +
Sbjct: 113 VCNVCLGILQ-EFC-----------EADFVKQVCQKVNSADYQFTSFVFSVSLPPQLSVR 160
Query: 163 ENKLSLYVKRKYRSEA--WFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIR 219
E L VK++ R+ + KD + K+A K+ + L L V G S F +
Sbjct: 161 ERAAWLGVKQQMRNLGLPFAKDDIVQ----LKEAYKWIIHPQLSEELGVPADGKSLFEVS 216
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E E C +C K+K SV + VI
Sbjct: 217 VVFAHPETD----------EECHFLATACPDCFKPAKNK-------QSVFTRMAVI---- 255
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPC-RLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 256 KALERIKEEDFLKHFPCPPSSPKNLCDALEIECNNGAVFVAGRYNKYSRNLPQTPWIIDG 315
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I +++ + DS+ F ++GRED+DVR LG+GRPF E+ N R + +
Sbjct: 316 ERKLESSVEELISEHLMAKFKADSFNFSSSGREDVDVRTLGNGRPFAMELVNPRRIHFTA 375
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+K ++ IN +K ++V++L++V + M+EGE EK K Y+AL+W + +Q ED
Sbjct: 376 EEMKRLQQAINDSSDK-IQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIQREDI 434
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ +KE ++ QKTP+RVLHRR R ++I+ MK E I +F LH+ TQAG
Sbjct: 435 AFLDDIKE----LKLDQKTPLRVLHRRPLAMRCRLIHTMKSEYI--DEHHFRLHLKTQAG 488
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS+L A+IL+LDV V ++
Sbjct: 489 TYIKEFVHGDFGRTKPNIGSLLNRTADILELDVESVDVD 527
>gi|403260628|ref|XP_003922764.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 1
[Saimiri boliviensis boliviensis]
gi|403260630|ref|XP_003922765.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform 2
[Saimiri boliviensis boliviensis]
Length = 529
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS P +
Sbjct: 107 NVCNICLGILQ-EFCEK-----------DFVKKVCQKVEASGFEFTSLVFSVSFPAQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAKCPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKATCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKVIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + +F L + TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHSMESHYV--DEHHFRLRLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|351712640|gb|EHB15559.1| Putative tRNA pseudouridine synthase Pus10 [Heterocephalus glaber]
Length = 529
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 249/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C +KE F + + V+ G + + VS P I
Sbjct: 107 NVCNVCLGILQ-EFC-EKE----------FIKKVCQKVETSGFEFTNLVFSVSFPAQISV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R+ K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSMSLGRNY--VVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLGTICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFCKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN +K ++V++L++V + M+EGE EK K Y+AL+W ++ +Q ED
Sbjct: 371 EEIKELQQKINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKEDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I+ M+ + +F L++ TQAG
Sbjct: 430 EFLNGVKD----LKIDQKTPLRVLHRRPLAVRSRVIHSMETHYV--DEHHFRLYLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRTNP+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTNPNIGSLMNLTADILELDVESVDVD 522
>gi|162287357|ref|NP_001104659.1| pseudouridylate synthase 10 [Danio rerio]
gi|158253928|gb|AAI53933.1| Zgc:171472 protein [Danio rerio]
Length = 519
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/464 (33%), Positives = 243/464 (52%), Gaps = 47/464 (10%)
Query: 97 SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMP 156
+ + ++C CLG+LQ +C FA +++ VKK+ ++ +S L VS+P
Sbjct: 92 TEADADVCPVCLGVLQ-DFCSPA-----------FAKQVSDAVKKQQYEFESLVLTVSLP 139
Query: 157 PTILENENKLSLYVKRKYRSEAWF--KDRSISECSSTKDALKFALTNPLETLLDVKCGIS 214
+ E+ L+VK++ R ++ KD I KDA K+A+ + L
Sbjct: 140 AQLSVREHSCWLHVKKEVREKSMCLGKDDVIQ----LKDAFKWAVQGKIAQELGAAV--- 192
Query: 215 TFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEV 274
L S E S+ + E E C +C K+K+ S+ + V
Sbjct: 193 -----LANSPCEVSVGFIH-AETDEDCHFLANTCPDCFKPTKNKA-------SIFTRMAV 239
Query: 275 IPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTR 333
+ EK + + S + P KK N C L+ C T ++ GRY K+SR + QT
Sbjct: 240 VKALEK----ISEETFSRYYPCPPKKPNSRCSALDTTCLHTSVFIAGRYNKFSRELPQTP 295
Query: 334 WIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-R 392
W+ID ER + S+EE+I +L R D + F ++GRED+DVR LG+GRPF E+ N R
Sbjct: 296 WVIDGERRMDGSVEELIAAPLLSSFRADGFNFSSSGREDVDVRTLGNGRPFAVELLNPHR 355
Query: 393 EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPL 452
+ +K+I+ IN +K +RV++L+IV + + M+EGE EK K Y+AL+W + +
Sbjct: 356 TKFNRTEIKQIQETINQSSDK-IRVRDLQIVSREATSRMKEGEEEKTKTYSALIWTEKTI 414
Query: 453 QDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHM 512
D + ++K+ ++ QKTP+RVLHRR R+++I+ M + +F L +
Sbjct: 415 DSSDLHFLENIKD----LKVAQKTPLRVLHRRPLAVRQRLIHSM--SSVYLDKHHFTLKL 468
Query: 513 CTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TQAGTYIKEFVHGD GRT P++ ++ A+IL+LDV V ++
Sbjct: 469 RTQAGTYIKEFVHGDFGRTKPNLCDLMNTDADILELDVESVDID 512
>gi|126303822|ref|XP_001375063.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Monodelphis
domestica]
Length = 529
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/459 (34%), Positives = 240/459 (52%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N C CLGILQ +C K F + + V G++ + VS PP +
Sbjct: 107 NSCNICLGILQ-EFCEKK-----------FVKKVCQKVDSAGYEFTNLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKHGLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPVDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E E C +C K+K SV + V+
Sbjct: 212 VIFAHPETD----------EDCHFLSTSCPDCFKPAKNK-------QSVFTRMAVV---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ + +++ + + P C +E C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALDKIKEEDFRKKFPCPPNSPKTFCSAIEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I +L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISSQLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVQFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN +K ++V++L++V + M+EGE EK K Y+ALVWI + +Q +D
Sbjct: 371 QDIKELQQKINISSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALVWIDKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ + LK+ I QKTP+RVLHRR R +II+ +K I +F LH+ TQAG
Sbjct: 430 EFLDDLKD----LPINQKTPLRVLHRRPLAIRTRIIHTVKTHYI--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNGTADILELDVESVDVD 522
>gi|344255502|gb|EGW11606.1| Putative tRNA pseudouridine synthase Pus10 [Cricetulus griseus]
Length = 450
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 247/458 (53%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C +KE F + + V+ G + S L VS PP +
Sbjct: 29 VCNVCLGILQ-EFC-EKE----------FVAKVCQKVEASGFEFTSMVLSVSFPPQLSVR 76
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 77 EHAAWLLVKQEIGKQSLPLGRN--DLVQLKEAYKW-ITHPLFSEGLGIPIDGKSLFEVSV 133
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E +E C +C K+K SV + V+ K
Sbjct: 134 VFAHPET----------VEDCHFLGEVCPDCFKPAKNK-------QSVFTRMAVL----K 172
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 173 ALNKIKEEDFFKQFPCPPNSPKTVCTVLEIECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 232
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 233 RKMESSVEELISDHLLAAFKAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVRFTSQ 292
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
VKE++ KIN +K ++V++L++V + M+EGE EK K Y+AL+W S+ +Q +D
Sbjct: 293 EVKELQQKINKSSDK-IQVRDLQLVTREAIGYMKEGEEEKTKTYSALIWTSKAIQKKDIG 351
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
++ LK+ +I QKTP+RVLHRR R + I+ M+ + +F L++ TQAGT
Sbjct: 352 FLNDLKD----LKIDQKTPLRVLHRRPLAVRTRSIHSMETHYL--DEHHFRLYLKTQAGT 405
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 406 YIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 443
>gi|26325792|dbj|BAC26650.1| unnamed protein product [Mus musculus]
Length = 527
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 243/458 (53%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E E C ++C K+K SV + V+ K
Sbjct: 211 VFAHPETG----------EDCHFLGEVCRDCFKPAKNK-------QSVFTRMAVL----K 249
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
+ + +++ + P C LE C ++ GGRY KYSRN+ QT WIID E
Sbjct: 250 ALSKIKEEDFLGQFPCPPHSPKTVCTVLEVECTHGAVFVGGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 370 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 428
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 429 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 482
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 483 YIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520
>gi|354498522|ref|XP_003511364.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cricetulus
griseus]
Length = 527
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 247/458 (53%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C +KE F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFC-EKE----------FVAKVCQKVEASGFEFTSMVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEIGKQSLPLGRN--DLVQLKEAYKW-ITHPLFSEGLGIPIDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E +E C +C K+K SV + V+ K
Sbjct: 211 VFAHPET----------VEDCHFLGEVCPDCFKPAKNK-------QSVFTRMAVL----K 249
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 250 ALNKIKEEDFFKQFPCPPNSPKTVCTVLEIECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAAFKAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVRFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
VKE++ KIN +K ++V++L++V + M+EGE EK K Y+AL+W S+ +Q +D
Sbjct: 370 EVKELQQKINKSSDK-IQVRDLQLVTREAIGYMKEGEEEKTKTYSALIWTSKAIQKKDIG 428
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
++ LK+ +I QKTP+RVLHRR R + I+ M+ + +F L++ TQAGT
Sbjct: 429 FLNDLKD----LKIDQKTPLRVLHRRPLAVRTRSIHSMETHYL--DEHHFRLYLKTQAGT 482
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 483 YIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 520
>gi|148675947|gb|EDL07894.1| RIKEN cDNA 4933435A13, isoform CRA_b [Mus musculus]
Length = 552
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 131 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 178
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 179 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 235
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 236 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 285
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 286 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 334
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 335 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 394
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 395 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 453
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 454 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 507
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 508 YIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 545
>gi|296482679|tpg|DAA24794.1| TPA: pseudouridylate synthase 10 [Bos taurus]
Length = 532
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 176/554 (31%), Positives = 271/554 (48%), Gaps = 92/554 (16%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ L K LL + L
Sbjct: 15 LLSTGTCPRCIFRFCGVDFHAPYKLPYKELLRELQKFLEAEEDELVSEVPNPPPKKIRLQ 74
Query: 88 EQADLHQNISSVEPN---------------------ICRSCLGILQFTYCGDKERVVENE 126
E D + S+ N +C CLGILQ +C +KE
Sbjct: 75 EPEDQIDGMDSLSQNGEGKLSVTEDGSSSSKNSNLNVCNVCLGILQ-DFC-EKE------ 126
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
F + + V+ G + + L VS PP + E+ L VK++ ++ R+
Sbjct: 127 ----FIKKVCQKVEASGFEFTNLVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ +C + SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPDCFKPASNN-------RSVFTRMAVM----KALNKIKEEDFCKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLKVFKAESF 338
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++
Sbjct: 339 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 397
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + M+EGE EK K Y+AL+W ++ +Q +D + + +K+ I QKTP+RVLH
Sbjct: 398 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LNIDQKTPLRVLH 453
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++
Sbjct: 454 RRPLAVRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVT 511
Query: 543 AEILQLDVTDVKMN 556
A+IL+LDV V ++
Sbjct: 512 ADILELDVESVDVD 525
>gi|21312770|ref|NP_083232.1| putative tRNA pseudouridine synthase Pus10 [Mus musculus]
gi|68342034|ref|NP_082580.1| putative tRNA pseudouridine synthase Pus10 [Mus musculus]
gi|75905504|ref|NP_001028826.1| putative tRNA pseudouridine synthase Pus10 [Mus musculus]
gi|81905037|sp|Q9D3U0.1|PUS10_MOUSE RecName: Full=Putative tRNA pseudouridine synthase Pus10; AltName:
Full=Coiled-coil domain-containing protein 139; AltName:
Full=tRNA pseudouridine 55 synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|12856131|dbj|BAB30576.1| unnamed protein product [Mus musculus]
gi|19343742|gb|AAH25555.1| Pseudouridylate synthase 10 [Mus musculus]
gi|26353592|dbj|BAC40426.1| unnamed protein product [Mus musculus]
gi|148675946|gb|EDL07893.1| RIKEN cDNA 4933435A13, isoform CRA_a [Mus musculus]
Length = 527
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 211 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 260
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 261 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 370 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 428
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 429 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 482
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 483 YIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520
>gi|410917598|ref|XP_003972273.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Takifugu rubripes]
Length = 537
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 245/461 (53%), Gaps = 46/461 (9%)
Query: 100 EPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTI 159
E ++C +CLG+LQ +C D R A+ ++ VK E ++ DS L VS+PP +
Sbjct: 112 ESHVCVACLGVLQ-EFC-DVTR----------AIKVSAAVKAEQYEFDSLVLSVSLPPQL 159
Query: 160 LENENKLSLYVKRKYRSEAWFKDRSISE--CSSTKDALKFALTNPLETLLDVKCGISTFH 217
E+ L+VK++ R K S+SE K+A K+ + + L G++
Sbjct: 160 CVREHSCWLHVKKEVRE----KCMSLSEDDVIQVKEAFKWVMQGLIAKELG---GVAV-- 210
Query: 218 IRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVI-P 276
+T S E + + E C NC K+K SV + V+
Sbjct: 211 --VTKSLFEVGVEFSH-PETDSDCYFLASTCPNCFKPTKNK-------QSVFTRMAVVKA 260
Query: 277 VDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWII 336
+D+ S + PS P + + + C ++ GRY K+ R++ QT W+I
Sbjct: 261 LDKISDFAFLKHYPSP----PARPSRHCVQQDVQCLHVSLFIAGRYNKFCRSLPQTPWVI 316
Query: 337 DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVP 395
D +R E+S+EE+I IL R D + F ++GRED+DVR LG+GRPF E+ N R
Sbjct: 317 DGQRRMESSVEELIAAPILVTFRADGFNFSSSGREDVDVRTLGNGRPFAMELLNPHRSRV 376
Query: 396 SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDE 455
S++ +K+++ IN+ +K +RV++L+IV + + M+EGE EK K Y ALVW + +Q E
Sbjct: 377 SKVEMKQLQETINASSDK-IRVRDLQIVTREATSRMKEGEEEKTKSYTALVWTHKAIQRE 435
Query: 456 DFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQ 515
D + +K+ + QKTP+RVLHRR+ R+++I+ M + + +F L + TQ
Sbjct: 436 DLSFMDDIKDLT----LNQKTPLRVLHRRALAVRQRVIHSMSTRFV--DAHHFYLGLKTQ 489
Query: 516 AGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
AGTYIKEFVHGD GRT P++ +L +IL+LDV V ++
Sbjct: 490 AGTYIKEFVHGDFGRTQPNMCELLKTDTDILELDVESVDVD 530
>gi|148675948|gb|EDL07895.1| RIKEN cDNA 4933435A13, isoform CRA_c [Mus musculus]
Length = 552
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 131 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 178
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 179 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 235
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 236 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 285
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 286 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 334
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 335 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 394
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 395 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 453
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 454 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 507
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 508 YIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 545
>gi|348563532|ref|XP_003467561.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Cavia
porcellus]
Length = 529
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 248/458 (54%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C +KE F + + V+ G + + VS PP +
Sbjct: 108 VCNVCLGILQ-EFC-EKE----------FIKKVCQKVETSGFEFTNLVFSVSFPPQLSVR 155
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ RS + K+A K+ +T+PL E L G S F + +
Sbjct: 156 EHAAWLLVKQEMGKQSLSLGRS--DVVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSV 212
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E +E C +C K+K SV + V+ K
Sbjct: 213 IFAHPET----------VEDCHFLGAICPDCFKPAKNK-------QSVFTRMAVM----K 251
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
+ N +++ + + P C LE C ++ GRY K+SRN+ QT WIID E
Sbjct: 252 ALNKIKEEDFRKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKFSRNLPQTPWIIDGE 311
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + + DS+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 312 RKLESSVEELISDHLLTVFKADSFNFSSSGREDVDVRTLGNGRPFAVELVNPHRVHFTSQ 371
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ KIN +K ++V++L++V + M+EGE EK K Y+AL+W ++ +Q ED +
Sbjct: 372 EMKELQQKINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQIEDIE 430
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
++ +K+ +I QKTP+RVLHRR R ++I+ M+ + +F L + TQAGT
Sbjct: 431 FLNDIKD----LKIDQKTPLRVLHRRPLAVRTRVIHAMETHFV--DEHHFRLCLKTQAGT 484
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 485 YIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>gi|74203012|dbj|BAE26208.1| unnamed protein product [Mus musculus]
Length = 527
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/549 (31%), Positives = 263/549 (47%), Gaps = 87/549 (15%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
L S C RCIFR G+ +P K LL + L
Sbjct: 15 LFSSGTCPRCIFRFCGVDLPAPYKHPSKELLNELQKFLEPEKPELILEAPNPPLKKIRLH 74
Query: 88 EQA------DLHQNISSVEPN----------ICRSCLGILQFTYCGDKERVVENESACDF 131
E D + +S E +C CLGILQ +C F
Sbjct: 75 EDGIDNLSEDGKEGVSVTEDESMAEKPSKLRVCNVCLGILQ-EFCEK-----------GF 122
Query: 132 AVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSST 191
+ + V+ G + S L VS PP + E+ L VK++ ++ R+ +
Sbjct: 123 ITKVCQKVEASGFEFTSVVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN--DVVQL 180
Query: 192 KDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAK 249
K+A K+ +T+PL E L G S F + + ++ E + E C +
Sbjct: 181 KEAYKW-ITHPLFSEELGVPTDGKSLFEVSVVFAHPETA----------EDCHFLGEVCR 229
Query: 250 NCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LE 308
+C K+K ++ + + +++ D N P C LE
Sbjct: 230 DCFKPAKNKQSVFTRMAVLKALSKIKEEDFLGQFPCPPNSPKTV-----------CTVLE 278
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F ++
Sbjct: 279 VECTHGAVFVAGRYNKYSRNLPQTPWIIDGERKMESSVEELISDHLLAVFKAESFNFSSS 338
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
GRED+DVR LG+GRPF E+ N V + +KE++ IN +K ++V++L++V +
Sbjct: 339 GREDVDVRTLGNGRPFAVELLNPHRVHFTSQEMKELQQTINKSSDK-IQVRDLQLVTREA 397
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
M+EGE EK K Y+AL+W +R +Q +D + LK+ +I QKTP+RVLHRR
Sbjct: 398 IGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKD----LKIDQKTPLRVLHRRPLA 453
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R + I+ MK + +F LH+ TQAGTYIKEFVHGD GRT P++GS++ A+IL+
Sbjct: 454 VRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNLGSLMNVTADILE 511
Query: 548 LDVTDVKMN 556
LDV V ++
Sbjct: 512 LDVESVDVD 520
>gi|303283430|ref|XP_003061006.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457357|gb|EEH54656.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 241
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 5/243 (2%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P+Y GGRYLK++R V Q+ W+ D E +GE S++ + ++ R D K +AAGRED+
Sbjct: 1 APVYVGGRYLKWARGVPQSPWVADGETVGEGSVQTSLEAVVVRRLRADGAKLNAAGREDM 60
Query: 374 DVRMLGSGRPFLFEIQNAREV-PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
DVRMLG GRPF+ E+ N R + PS E+E ++ + + +V L + + + M
Sbjct: 61 DVRMLGGGRPFILEVHNPRRIAPSTAECAEMERELEANGDGVVTASGLHLSDHERYRAMH 120
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
EG AEK+K Y+A+ + +R L D D + +K+ V + Q TP RVLHRRS RE+
Sbjct: 121 EGSAEKEKTYSAVCYAARALTDADVAKLCGVKDLV----VRQSTPTRVLHRRSAAVRERT 176
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I M E + GS ++F L M TQAGTY+KEFVHGD GRT+P++G++LGC +ILQLDVTD
Sbjct: 177 IASMSAEAVPGSPRFFTLRMTTQAGTYVKEFVHGDFGRTSPNVGTLLGCPCDILQLDVTD 236
Query: 553 VKM 555
V M
Sbjct: 237 VDM 239
>gi|26390505|dbj|BAC25908.1| unnamed protein product [Mus musculus]
Length = 527
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 239/458 (52%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 211 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 260
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 261 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 370 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 428
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 429 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 482
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKE VHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 483 YIKELVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520
>gi|449276790|gb|EMC85189.1| Putative tRNA pseudouridine synthase Pus10 [Columba livia]
Length = 527
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 237/456 (51%), Gaps = 49/456 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C DF + V +Q SF VS+PP +
Sbjct: 112 VCNVCLGILQ-EFC-----------EADFVKKVCRKVTSADYQFTSFVFSVSLPPQLSVR 159
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTY 222
E L VK++ + + K+A K+ + +P++TLL F + + +
Sbjct: 160 ECAAWLLVKQEMGKLGL--SLAKDDIVQLKEAYKW-IIHPMKTLL----FSVLFEVSVIF 212
Query: 223 SRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSS 282
+ E E C +C K+K SV + VI EK
Sbjct: 213 AHPETE----------EECHFLATACPDCFKPAKNK-------QSVFTRMAVIKALEK-- 253
Query: 283 NGLQDNEPSETHEFPLKKVNEPC-RLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERM 341
+++ + + P C LE C ++ GRY KYSRN+ QT WIID ER
Sbjct: 254 --IKEEDFLKHFPCPPSSPKNLCVALEIQCNNGAVFVAGRYNKYSRNLPQTPWIIDGERK 311
Query: 342 GEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLV 400
E+S+EE+I +++ + DS+ F ++GRED+DVR LG+GRPF E+ N R + + +
Sbjct: 312 LESSVEELISEHLIAEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPRRIHFTAEEM 371
Query: 401 KEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTI 460
K ++ IN+ +K ++V++L++V + M+EGE EK K Y+AL+W + +Q ED +
Sbjct: 372 KGLQQTINNSSDK-IQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKAIQKEDIAFL 430
Query: 461 SSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYI 520
+KE ++ QKTP+RVLHRR R +II+ MK + I +F LH+ TQAGTYI
Sbjct: 431 DDIKE----LKLDQKTPLRVLHRRPLAVRCRIIHTMKSQYI--DEHHFRLHLKTQAGTYI 484
Query: 521 KEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
KEFVHGD GRT P+IGS+L A+IL+LDV V ++
Sbjct: 485 KEFVHGDFGRTKPNIGSLLNRTADILELDVESVDVD 520
>gi|348681913|gb|EGZ21729.1| hypothetical protein PHYSODRAFT_329641 [Phytophthora sojae]
Length = 487
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/516 (31%), Positives = 248/516 (48%), Gaps = 56/516 (10%)
Query: 44 LPTDAVKDLLSKEVCLRCIFRLFGMQ---VPICSSLSVKSLLCHVLGEQADLHQNISSVE 100
L T+ ++ VC+RC R + + CS + + + E L E
Sbjct: 12 LSTEGLQRARELGVCVRCCLRFADIDDSDIYACSEEKLVDAVHEFVKESGVL--GFEPQE 69
Query: 101 PNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTIL 160
+ C C+G+L T+ E+++ + + +L K + + +FSL + +P ++
Sbjct: 70 VSGCTCCVGVLNGTF---HEKILAD---------VQQLADKADYDVKAFSLNIKLPSVVM 117
Query: 161 ENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLL-DVKCG-ISTFHI 218
E L ++ RS+ R + KD LK L + +L + +C S F +
Sbjct: 118 LREYSLLQFL----RSDVENFPRKMP--FDMKDVLKSFLAPSISKMLKNAECANGSEFSV 171
Query: 219 RLTYSRVEASIRIQNFV---EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVI 275
+ E++ ++ +++E ++R D V ++ + +
Sbjct: 172 LIDVKHDESADEVRQIPAIKKQLENTRKRGRGPPPVFD------GFGAVSRALAALGSSM 225
Query: 276 PVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWI 335
P KS EP F R +Y GRYLK+ R +SQT W+
Sbjct: 226 PDTIKSPPARLTTEPHAVATFE---------------RDSVYMQGRYLKFQRGLSQTPWV 270
Query: 336 IDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REV 394
+D ERMGE+S+EE IG LP RG YKFH AGRED+DVRMLG+GRPF+ EI +A +
Sbjct: 271 LDGERMGESSVEECIGDIALPFFRGSGYKFHTAGREDVDVRMLGNGRPFILEILDAEKAY 330
Query: 395 PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQD 454
+ +IE +N N V + +K + ++ G K+K Y +VW L
Sbjct: 331 LDQSEYDQIEKAVNDANNGAVEIVKVKRSTKDYFAGLQTGADSKKKTYCCVVWSEGVLTP 390
Query: 455 EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT 514
E I ++++ I Q+TPIRVLHRR+ + R KII+ K E + + Y LL + T
Sbjct: 391 ELVAKIDAIQDLT----IQQQTPIRVLHRRTLMTRPKIIHAAKCEVL--NKHYMLLRLTT 444
Query: 515 QAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
AGTY+KEFVHGD GRTNP++ SILGC A+I+QLDV
Sbjct: 445 SAGTYVKEFVHGDRGRTNPNVASILGCDADIIQLDV 480
>gi|149640876|ref|XP_001510623.1| PREDICTED: putative tRNA pseudouridine synthase Pus10
[Ornithorhynchus anatinus]
Length = 529
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 239/457 (52%), Gaps = 47/457 (10%)
Query: 104 CRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENE 163
C CLG+LQ +C DF + + V G+Q + VS PP + E
Sbjct: 109 CNVCLGVLQ-EFCEK-----------DFIKKVCQKVDSSGYQFANLVFSVSFPPQLSVRE 156
Query: 164 NKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLT 221
+ L VK++ + +R K+A K+ +T+PL E L G S F + +
Sbjct: 157 HAAWLLVKQEMGKQGLLLERD--GVIQLKEAYKW-ITHPLFSEELGVPVDGKSPFEVCVI 213
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
++ E E C +C K+K SV + V+ EK
Sbjct: 214 FAHPETD----------EDCHFLVTVCPDCFKPTKNK-------QSVFTRMAVVKALEK- 255
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
+++ + + P C LE C + ++ GRY KYSRN+ QT WIID ER
Sbjct: 256 ---IKEKDFRKWFPCPPSLPKAVCTALEIQCAHSAVFVAGRYNKYSRNLPQTPWIIDGER 312
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
E+S+EE+I +++ M + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 313 KLESSVEELISDHLVTMFKAESFNFSSSGREDVDVRTLGNGRPFAIELLNPHRVHFTSQE 372
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
++E++ INS +K ++V++L++V + M+EGE EK K Y+ALVW R +Q +D +
Sbjct: 373 MRELQQTINSASDK-IKVRDLQLVTREAIAHMKEGEEEKTKTYSALVWTDRVIQKKDIEF 431
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ K+ +I QKTP+RVLHRR R ++I+ M+ + I +F L + TQAGTY
Sbjct: 432 LDDTKD----LKIDQKTPLRVLHRRPLAVRTRLIHTMETQYI--DEHHFRLRLKTQAGTY 485
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKEFVHGD GRT P+IG ++ A+IL+LDV V ++
Sbjct: 486 IKEFVHGDFGRTTPNIGFLMNGTADILELDVESVDVD 522
>gi|313661356|ref|NP_001186378.1| putative tRNA pseudouridine synthase Pus10 [Gallus gallus]
Length = 538
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 240/465 (51%), Gaps = 51/465 (10%)
Query: 97 SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMP 156
S+VE +C CLGILQ +C DF + E V Q SF VS+P
Sbjct: 113 SAVE--VCNVCLGILQ-EFC-----------EIDFVKKMCEKVNSSDFQFTSFVFSVSLP 158
Query: 157 PTILENENKLSLYVKRKYRSEAWFKDRSIS--ECSSTKDALKFALTNPLETLLDVKC-GI 213
P + E+ L VK+ E D S++ + K+A K+ + L L V G
Sbjct: 159 PQLSVREHAAWLLVKQ----EMGKLDLSLAKDDIVQLKEAYKWIIHPQLSEELGVPTDGK 214
Query: 214 STFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTE 273
S F + + ++ E E C+ +C K+K SV +
Sbjct: 215 SLFEVSVVFAHPETD----------EECRFLATVCPDCFKPAKNK-------QSVFTRMA 257
Query: 274 VIPVDEKSSNGLQDNEPSETHEFPLKKVNEPC-RLECLCFRTPIYFGGRYLKYSRNVSQT 332
VI EK +++ + + P C LE C ++ GRY KYSRN+ QT
Sbjct: 258 VIKALEK----IKEEDFLKHFPCPPSSPKNLCVALEIQCNNGAVFVAGRYNKYSRNLPQT 313
Query: 333 RWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR 392
WIID ER E+S+EE+I +++ + DS+ F ++GRED+DVR LG+GRPF E+ N
Sbjct: 314 PWIIDGERKLESSVEELISEHLMAEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPH 373
Query: 393 EVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRP 451
+ + +K + IN+ +K ++V++L++V + M+EGE EK K Y+AL+W +
Sbjct: 374 RIHFTAEEMKGFQQTINNSSDK-IQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKT 432
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLH 511
+Q E + +KE ++ QKTP+RVLHRR R +II+ MK + I +F LH
Sbjct: 433 IQKEHIAFLDDIKE----LKLDQKTPLRVLHRRPLALRCRIIHTMKSQYI--DEHHFRLH 486
Query: 512 MCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ TQAGTYIKEFVHGD GRT P+IGS+L +IL+LDV V ++
Sbjct: 487 LKTQAGTYIKEFVHGDFGRTKPNIGSLLNRTTDILELDVESVDID 531
>gi|326914737|ref|XP_003203679.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Meleagris gallopavo]
Length = 533
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 234/455 (51%), Gaps = 45/455 (9%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
++C CLGILQ +C DF + E V +Q SF L VS+PP +
Sbjct: 111 DVCNVCLGILQ-EFC-----------EIDFVKKMCEKVNSSDYQFTSFVLSVSLPPQLSV 158
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRL 220
E+ L VK++ + + K+A K+ + L L V G S F + +
Sbjct: 159 REHAAWLLVKQEMGKLGL--SLAKDDIVQLKEAYKWIIHPQLSEELSVPTDGKSLFEVSV 216
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
+ E E C +C K+K SV + VI EK
Sbjct: 217 VFGHPETD----------EECCFLATVCPDCFKPAKNK-------QSVFTRMAVIKALEK 259
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPC-RLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
+++ + + P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 260 ----IKEEDFLKHFPCPPSPPKNLCVALEIQCNNGAVFVAGRYNKYSRNLPQTPWIIDGE 315
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I +++ + DS+ F ++GRED+DVR LG+GRPF E+ N + +
Sbjct: 316 RKLESSVEELISEHLMAEFKADSFNFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTAE 375
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+K ++ IN+ +K ++V++L++V + M+EGE EK K Y+AL+W + +Q E
Sbjct: 376 EMKGLQQTINNSSDK-IQVRDLQLVTREAIGRMKEGEEEKTKTYSALIWTDKTIQKEHIA 434
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ ++KE ++ QKTP+RVLHRR R +II+ MK E I +F LH+ TQAGT
Sbjct: 435 FLDNIKE----LKLDQKTPLRVLHRRPLALRCRIIHTMKSEYI--DEHHFRLHLKTQAGT 488
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
Y+KEFVHGD GRT P+IGS+L +IL+LDV V
Sbjct: 489 YVKEFVHGDFGRTKPNIGSLLNRTTDILELDVESV 523
>gi|119620427|gb|EAX00022.1| hypothetical protein FLJ32312, isoform CRA_a [Homo sapiens]
Length = 326
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 171/251 (68%), Gaps = 8/251 (3%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 76 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 135
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 136 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 194
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 195 EAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 250
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I++M+ + + +F LH+ TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 251 LAVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 308
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 309 LELDVESVDVD 319
>gi|119620432|gb|EAX00027.1| hypothetical protein FLJ32312, isoform CRA_f [Homo sapiens]
Length = 283
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 171/251 (68%), Gaps = 8/251 (3%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 33 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 92
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 93 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 151
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 152 EAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 207
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I++M+ + + +F LH+ TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 208 LAVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 265
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 266 LELDVESVDVD 276
>gi|301106881|ref|XP_002902523.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262098397|gb|EEY56449.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 481
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 160/502 (31%), Positives = 239/502 (47%), Gaps = 60/502 (11%)
Query: 57 VCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPN---ICRSCLGILQF 113
VC RC R G++ + + + L D + VEP C C+G+L
Sbjct: 25 VCDRCCLRFAGVEDSDVYAYTEEKLA----DAMNDFIKESGVVEPKEVVGCTCCVGVLNG 80
Query: 114 TYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRK 173
+ E+++ + + +L ++ + + +FSL + +P +L E L ++
Sbjct: 81 AF---HEKILAD---------VQQLAEEADYDVKAFSLNIKLPSVVLLREYALLKFL--- 125
Query: 174 YRSEAWFKDRSISECSSTKDALKFALTNPLETLL-DVKCGI-STFHIRLTYSRVEASIRI 231
RS R I KD LK L + +L + +C S F + + E++ +
Sbjct: 126 -RSNVDNFPRKIP--FDMKDVLKSLLAPTISRMLKNAECATKSEFAVLVDIKHDESADEV 182
Query: 232 QNFV---EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDN 288
+ ++++G ++R D G + ++ +P KS
Sbjct: 183 RQIPAIKKQLDGTRKRGRGPPPVFDGF-------GAVSRALAALTSMPESIKSPPSRLTT 235
Query: 289 EPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEE 348
P F R +Y GRYLK+ R +SQT W++D RMGE+S+EE
Sbjct: 236 APEAAASFE---------------RDSVYMQGRYLKFQRGLSQTPWVLDGVRMGESSVEE 280
Query: 349 IIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKIN 408
IG LP RG SYKFH AGRED+DVRMLG+GRPF+ EI A SE +I+ N
Sbjct: 281 CIGDVALPFFRGSSYKFHTAGREDVDVRMLGNGRPFILEILGA--YLSEDEYDQIQKAAN 338
Query: 409 SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR 468
N V + +K + ++ G K+K Y +VW L E I S+++
Sbjct: 339 DANNGAVEIVQVKSSTKDYFAALQAGADSKKKTYCCVVWSEGELTPEAIAKIDSIQDLT- 397
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
I Q+TP+RVLHRR+ + R KII+ K E + + Y LL + T AGTY+KEFVH D
Sbjct: 398 ---IQQQTPVRVLHRRTLMTRPKIIHAAKCEVL--NKHYMLLRLTTSAGTYVKEFVHSDR 452
Query: 529 GRTNPSIGSILGCRAEILQLDV 550
GRTNP+I SILGC A+I+QLDV
Sbjct: 453 GRTNPNIASILGCDADIIQLDV 474
>gi|326428390|gb|EGD73960.1| hypothetical protein PTSG_05654 [Salpingoeca sp. ATCC 50818]
Length = 622
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 164/261 (62%), Gaps = 9/261 (3%)
Query: 297 PLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILP 356
PL V P + PI+ GGRY K R VSQT W I R G+ S++E++ G +
Sbjct: 341 PLPAVATPT-VTVKYTHAPIFIGGRYNKLVRGVSQTPWFIGSGRRGDTSVQELVTGELEA 399
Query: 357 MCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSEL--LVKEIESKINSLENKL 414
+ + D KF +AGRED DVRMLG+GRPF+ E N R + + ++ + ++ +N +E
Sbjct: 400 LVKTDEVKFSSAGREDCDVRMLGTGRPFVLEFVNPRRIAALTADVLAQHQADVNGMEGSK 459
Query: 415 VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQ 474
VRV++L++V L+ EG+ +K+K YA +W PL + TI+S ++ + + Q
Sbjct: 460 VRVRDLRLVDKSDVALLHEGQEKKKKTYACPIWTETPLTQQQMDTINSTQDLL----LHQ 515
Query: 475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
KTP+RV HRR+ + RE++++ M I+ + ++LL +CTQ+GTYIKEFVHGDLGRT P+
Sbjct: 516 KTPMRVCHRRTLMTRERLVHRMHIQPL--KPHFYLLELCTQSGTYIKEFVHGDLGRTTPN 573
Query: 535 IGSILGCRAEILQLDVTDVKM 555
+ SILGC +IL LDV DV +
Sbjct: 574 MRSILGCNVDILSLDVVDVDL 594
>gi|327286192|ref|XP_003227815.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Anolis
carolinensis]
Length = 523
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 246/469 (52%), Gaps = 47/469 (10%)
Query: 92 LHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSL 151
+ ++ +V N+C CLGILQ C DF + + +Q SF
Sbjct: 91 MDNDVGAVAENVCTICLGILQ-ELC-----------EVDFVKMVCHKINSSEYQFSSFVF 138
Query: 152 EVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDV 209
VS PP + E+ L VK + + + ++ + K+A K+ +T+PL E L
Sbjct: 139 SVSFPPQLSVREHAAWLLVKEEIEKQDFVVEKE--DLVQLKEAYKW-ITHPLFLEELGVP 195
Query: 210 KCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVV 269
G S F + + ++ + + GC + AKN + SV
Sbjct: 196 ADGKSLFEVCVVFAHPDTDKDCRFLASACPGCFK---PAKN--------------KQSVF 238
Query: 270 STTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRN 328
+ VI K+ + + + + + P PC ++ C I+ GRY KYSR
Sbjct: 239 TRMAVI----KALDLISEEDFQKNFRCPPSLSMAPCTAVDIQCTNGAIFVAGRYNKYSRM 294
Query: 329 VSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEI 388
+ QT WIID ER E+S+EE+I +++ + + DS+ F ++GRED+DVR LG+GRPF E+
Sbjct: 295 LPQTPWIIDGERKMESSVEELISEHLMAVFKADSFNFSSSGREDVDVRTLGNGRPFAIEL 354
Query: 389 QNAREVPSELL-VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVW 447
N R V + +K ++ IN +K ++V++L++V + M+EGE EK K Y+AL+W
Sbjct: 355 VNPRRVRLDATEMKALQQTINDSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIW 413
Query: 448 ISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQY 507
+ ++ ED + ++KE ++ QKTP+RVLHRR R ++I+ M+ E I +
Sbjct: 414 TEKAIRSEDIAFLDNMKE----LKLDQKTPLRVLHRRPLAVRVRLIHTMRPEYI--DEHH 467
Query: 508 FLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
F LH+ TQAGTY+KEFVHGD GRT P++ S+L A+IL+LDV V ++
Sbjct: 468 FRLHLKTQAGTYVKEFVHGDFGRTKPNLSSLLETTADILELDVESVDVD 516
>gi|320163303|gb|EFW40202.1| pseudouridylate synthase 10 [Capsaspora owczarzaki ATCC 30864]
Length = 636
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 163/264 (61%), Gaps = 13/264 (4%)
Query: 297 PLKKVNEPCRLECLCF-RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
P + V +P L F R PI+ GGRY KYSR VSQ+ +I+ EER G+ S+ E+I +L
Sbjct: 375 PPRPVAQPAILGHSKFTRDPIFIGGRYNKYSRVVSQSPYIVGEERKGDTSVHELIAAPML 434
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNARE---VPSELLVKEIESKINSLEN 412
C K ++GRED+DVRMLG GRPF+ EI +AR P +L +++ +N
Sbjct: 435 AYCGASEIKLSSSGREDMDVRMLGRGRPFVLEIADARRSSLTPDKL--AYLQALVNDAAG 492
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V +++L + + EGE +K+K Y A++W+SRP+ ED ++ +E V +
Sbjct: 493 GRVHIRDLIVAQRADIPALNEGEDDKKKLYGAVIWVSRPITAEDIAALTRPEEMV----V 548
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP+RV+HRR+ R + + WM+ +I + Y LL + TQAGTYIKEF HGD GRT
Sbjct: 549 QQMTPLRVMHRRAICTRPRSVYWMRAHQI--NEHYLLLCLSTQAGTYIKEFAHGDFGRTA 606
Query: 533 PSIGSILG-CRAEILQLDVTDVKM 555
PSIGS+LG C A+I+QLDV D+ M
Sbjct: 607 PSIGSLLGNCEADIVQLDVLDIDM 630
>gi|147859191|emb|CAN83944.1| hypothetical protein VITISV_013561 [Vitis vinifera]
Length = 872
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 176/272 (64%), Gaps = 23/272 (8%)
Query: 50 KDLLSKEVCLRCIFRLFGMQVPI--CSSLSVKSLLCHVLGEQAD--LHQNI--------- 96
+D+L ++C+ CIFRL G++ I C SL + S+L V+GE D H+
Sbjct: 519 EDILGLQICIGCIFRLSGVRGHIFSCPSL-LLSILHXVIGEPTDSSTHRYTGIGGNEDSG 577
Query: 97 -------SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSF 149
S EP IC CLG+LQFTY DK+ +V+ +SA + AV+IA LVKKEGH+ D+F
Sbjct: 578 AAHSSQESECEPVICSICLGVLQFTYFDDKKMLVKKDSADELAVSIANLVKKEGHEFDNF 637
Query: 150 SLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDV 209
SLEVS+PP I ENE+ + LY+K+KY SE WF+++ +SE S KDALK +L NPLE LLDV
Sbjct: 638 SLEVSIPPVIAENEHVVLLYMKKKYGSELWFQEKFLSERISAKDALKLSLCNPLEKLLDV 697
Query: 210 K-CGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSV 268
K G STF IRLTY++ AS + QN E+ +GCKRR+ +N TV S + G+E S
Sbjct: 698 KSSGSSTFRIRLTYAQPRASGKNQNITERSQGCKRRRTGTENIFSTVHG-SVVDGIECSD 756
Query: 269 VSTTEVIPVDEKSSNGLQDNEPSETHEFPLKK 300
+ST+E K S+GLQDNE S+ +FPL+K
Sbjct: 757 ISTSEADAGIRKPSDGLQDNENSDCFKFPLEK 788
>gi|148675949|gb|EDL07896.1| RIKEN cDNA 4933435A13, isoform CRA_d [Mus musculus]
Length = 559
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 239/489 (48%), Gaps = 77/489 (15%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 211 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 260
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 261 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP---- 395
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 396 -------------------SELLVKEIESKINSLENKL---------VRVKNLKIVGSQG 427
+EL + ES I L L ++V++L++V +
Sbjct: 370 EMKELQQVRAARLRQACVCAELRLSGTESVIVFLSPILQTINKSSDKIQVRDLQLVTREA 429
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
M+EGE EK K Y+AL+W +R +Q +D + LK+ +I QKTP+RVLHRR
Sbjct: 430 IGHMKEGEEEKTKTYSALIWTNRAIQKKDIGFLDDLKD----LKIDQKTPLRVLHRRPLA 485
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R + I+ MK + +F LH+ TQAGTYIKEFVHGD GRT P++GS++ A+IL+
Sbjct: 486 VRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNLGSLMNVTADILE 543
Query: 548 LDVTDVKMN 556
LDV V ++
Sbjct: 544 LDVESVDVD 552
>gi|380796887|gb|AFE70319.1| putative tRNA pseudouridine synthase Pus10, partial [Macaca
mulatta]
Length = 314
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 168/251 (66%), Gaps = 8/251 (3%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F
Sbjct: 64 LEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFS 123
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGS 425
++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V
Sbjct: 124 SSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTR 182
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ M+EGE EK K Y+AL+W + +Q +D + ++ +K+ +I QKTP+RVLHRR
Sbjct: 183 EAIGHMKEGEEEKTKTYSALIWTDKAIQKKDIEFLNDIKD----LKIDQKTPLRVLHRRP 238
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R ++I+ M+ + + +F L + TQAGTYIKEFVHGD GRT P+IGS++ A+I
Sbjct: 239 LAVRARVIHSMETQYV--DEHHFRLRLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADI 296
Query: 546 LQLDVTDVKMN 556
L+LDV V ++
Sbjct: 297 LELDVESVDVD 307
>gi|340382569|ref|XP_003389791.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Amphimedon queenslandica]
Length = 475
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 244/458 (53%), Gaps = 54/458 (11%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGH-QIDSFSLEVSMPPTILE 161
+C+ C G+L + D + + +K E + + SF L +S+P ++L
Sbjct: 65 VCQYCTGLLY------------DSVQSDIVSKVVDELKGEDYVGLTSFQLCISLPQSLLL 112
Query: 162 NE--NKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-STFHI 218
++ +L L K S A+ KD+LKF L L L + I S F I
Sbjct: 113 HQKLTELKLCSKLPQYSNAF------------KDSLKFKLAKELSLRLGLSSEIDSPFKI 160
Query: 219 RLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVD 278
L ++ ++ F+++ GC + + ++ +S IT + V
Sbjct: 161 SLLFTHLQTEEAYVPFLKE-RGCTK--------VTKLRKQSKITYTHDIV---------- 201
Query: 279 EKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
KS +GL D E + L ++ + + P++ GGRY KYSR + Q+ W+ID
Sbjct: 202 NKSVDGLNDKELDKYFPDSLPHLSTLTSVTVQLYHKPVFIGGRYNKYSRTLPQSPWVIDG 261
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSEL 398
+ E+SI+E++ G + R D+ KF ++GREDIDVRMLG+GRPF+ E+ N R + E
Sbjct: 262 VKKSESSIQEMLTGETERIFRPDTIKFSSSGREDIDVRMLGTGRPFMLELVNPRLLEYEE 321
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+E++ INS ++ + V+ LK+V + ++++ GE EK+K Y++L+W S+ + +D
Sbjct: 322 EQQELQEAINSSTDE-ISVRELKMVDKKTSSILKTGEEEKEKLYSSLIWTSQSITPQDLV 380
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
++ V I QKTPIRVLHRRS R+++I +K + I S +F L + TQAGT
Sbjct: 381 FLNE----VSNLTISQKTPIRVLHRRSLATRQRLIYSLKAKWI--DSHHFQLDLSTQAGT 434
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGDLGRT P++ ++ R +I+ LDV ++K+
Sbjct: 435 YIKEFVHGDLGRTTPNLCGMMEGRVDIIALDVMEIKLK 472
>gi|358414423|ref|XP_003582829.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Bos taurus]
Length = 404
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 211/369 (57%), Gaps = 33/369 (8%)
Query: 192 KDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAK 249
K+A K+ +T+PL E L G S F + + ++ E +E C +
Sbjct: 58 KEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFLRAICP 106
Query: 250 NCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LE 308
+C K+K SV + V+ K+ N +++ + + P C LE
Sbjct: 107 DCFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFCKQFPCPPNSPKAVCTVLE 155
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F ++
Sbjct: 156 IECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLKVFKAESFNFSSS 215
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
GRED+DVR LG+GRPF E+ N V + +KE++ KIN+ NK ++V++L++V +
Sbjct: 216 GREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQLVTREA 274
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
M+EGE EK K Y+AL+W ++ +Q +D + + +K+ I QKTP+RVLHRR
Sbjct: 275 IGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKD----LNIDQKTPLRVLHRRPLA 330
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++ A+IL+
Sbjct: 331 VRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVTADILE 388
Query: 548 LDVTDVKMN 556
LDV V ++
Sbjct: 389 LDVESVDVD 397
>gi|148232252|ref|NP_001085415.1| putative tRNA pseudouridine synthase Pus10 [Xenopus laevis]
gi|82184788|sp|Q6ING2.1|PUS10_XENLA RecName: Full=Putative tRNA pseudouridine synthase Pus10; AltName:
Full=Coiled-coil domain-containing protein 139; AltName:
Full=tRNA pseudouridine 55 synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|48735236|gb|AAH72319.1| MGC83083 protein [Xenopus laevis]
Length = 515
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 238/457 (52%), Gaps = 46/457 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
IC CLGILQ +C E E V I V +++ F L +S+P +
Sbjct: 95 ICPLCLGILQ-QFC-------EPEFIEKVFVKINSAV----YELKDFVLSISLPAQLSVR 142
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLT 221
E+ L K++ D++ + K+A K+ + L L ++ S F + +
Sbjct: 143 EHSAWLQAKQEMGKHGHSLDKT--DIVQLKEAYKWIIHPLLSDQLGIQADSKSLFEVAVV 200
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
++ E C ++C K+K SV + V+ EK
Sbjct: 201 FTHPETD----------GDCHFLATVCRDCFKPTKNK-------QSVFTRMAVVKALEK- 242
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRL-ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
+++ + FP C + + C +P++ GRY KYSRN+ QT WIID ER
Sbjct: 243 ---IKEEDFRVQFPFPPSSPETTCEVVDIQCNHSPVFVAGRYNKYSRNLPQTPWIIDGER 299
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
E+S+EE+I +++ R S+ F ++GRED+DVR LG GRPF E+ N +V +
Sbjct: 300 KIESSVEELITDHLVAAFRSSSFNFSSSGREDVDVRTLGKGRPFAIELLNPHKVQFTGQE 359
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+K ++ KIN+ + ++V++L+IV + M+EGE EK K Y AL+WI + +++ED Q
Sbjct: 360 IKALQQKINTSDK--IKVRDLQIVSREAVAHMKEGEEEKTKCYCALIWIEKMVRNEDLQL 417
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ L+E I QKTP+RVLHRR R + I+ M+ E + +F L++ TQAGTY
Sbjct: 418 LDGLEELT----IAQKTPLRVLHRRPLASRSRTIHTMRTEYV--DEHHFRLYLKTQAGTY 471
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKEFVHGD GRT P++GSI+ A+IL+LDV V ++
Sbjct: 472 IKEFVHGDFGRTKPNVGSIMETNADILELDVESVDVD 508
>gi|167382415|ref|XP_001736092.1| coiled-coil domain-containing protein [Entamoeba dispar SAW760]
gi|165901530|gb|EDR27608.1| coiled-coil domain-containing protein, putative [Entamoeba dispar
SAW760]
Length = 490
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 230/431 (53%), Gaps = 63/431 (14%)
Query: 135 IAELVKKEGHQID-SFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKD 193
I E +K+ GH + +F + S P I E L Y+ R + S+ + R KD
Sbjct: 78 IHEALKESGHIYEGTFYINTSFPQAIFVREIALCRYITRTFPSKNYSPFR-------LKD 130
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQN--FVEKIEGCKRRKVDAKNC 251
L+F L N ++ D KC + + ++LT +R +E G KR++
Sbjct: 131 TLRFILMNKIK---DWKCELES-PLKLTIEFTHQQLREDGDKLIEISVGKKRKR------ 180
Query: 252 LDTVKDKSAITGVEN---SVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLE 308
++T+ A+ +EN V + IP P++ +P +
Sbjct: 181 METLTSTIAMNVIENIPLKVFEESFTIP--------------------PIRNEEDPGKYR 220
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
+ R IY GGRY KYSR +SQ++W+I + M E SI + IG + D Y A+
Sbjct: 221 FIFERDYIYIGGRYRKYSRQLSQSQWVIQGKEMHEHSITKEIGEVLKKYFECDEYFMIAS 280
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREV--PSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
GRED+DVRMLG+GRPF+FE+ N R+V P EL +I+ +IN ++ ++V +L+ + +
Sbjct: 281 GREDVDVRMLGNGRPFVFELHNPRKVSLPIELYA-QIQEEIN--KSPAIQVMHLQAIEVK 337
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKE-TVRCYQILQKTPIRVLHRRS 485
++++GE EK+K+Y AL+W S+KE ++ I QKTPIRVLHRRS
Sbjct: 338 DIDIIKKGEREKRKRYLALIW------------AESMKELKIKDLLIQQKTPIRVLHRRS 385
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
L RE++I + + I + LL + TQAGTYIKEFVHGDLGRT P+I +LGC A+I
Sbjct: 386 LLTRERMIYSLDLHPI--DEHFGLLELETQAGTYIKEFVHGDLGRTKPNIIELLGCNADI 443
Query: 546 LQLDVTDVKMN 556
L LDV +V ++
Sbjct: 444 LSLDVIEVLLD 454
>gi|325187223|emb|CCA21762.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 366
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 156/243 (64%), Gaps = 9/243 (3%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R P+Y GRYLK+ R VSQT WI+D ER+ E S+EE I ++LP+ RG YKFH+AGRED
Sbjct: 128 RDPVYIQGRYLKHKRGVSQTCWILDGERLAERSVEECIANSVLPLFRGSGYKFHSAGRED 187
Query: 373 IDVRMLGSGRPFLFEIQNAREVP--SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
+DVRMLG+GRPF+ EI NA +E + ++E IN +V V+++++ + +
Sbjct: 188 VDVRMLGNGRPFILEITNAESTSLNNEQCI-QLEKAINKTNEGIVEVRDIQLTSKEHFAC 246
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
++ G K+K Y ++W + E +I+ L + +I QKTP+RVLHRR+ + R
Sbjct: 247 LQNGADSKRKTYCCVIWSKAEITLEKVNSITKLSD----LKIDQKTPVRVLHRRTLMNRP 302
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
KII+ + E I + Y ++ + T AGTY+KEF+HGD GRT P++ S LG +ILQLDV
Sbjct: 303 KIIHQINCEII--NKHYMIVRLTTSAGTYVKEFIHGDRGRTQPNLSSFLGSDTDILQLDV 360
Query: 551 TDV 553
++
Sbjct: 361 ENL 363
>gi|346466073|gb|AEO32881.1| hypothetical protein [Amblyomma maculatum]
Length = 518
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 220/433 (50%), Gaps = 36/433 (8%)
Query: 133 VAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTK 192
+ I E VK G F+ +S+P T+ + + +Y+K K+ E ++K S + S K
Sbjct: 107 LQIVEAVKDSGCIFSKFTFLLSLPVTLDLRHHAMVIYLKDKF--EEFYKGSSNIDFVSAK 164
Query: 193 DALKFALTNPLETLLDVK-CGISTFHIRLTY----SRVEASIRIQNFVEKIEGCKRRKVD 247
+ K+ + V+ S F + +T + E ++ F E ++RK
Sbjct: 165 EVWKYIIGPMFADHFGVEFSATSGFQVSVTLPSPNAEEECGFLLKKFPESFPNRQQRKHQ 224
Query: 248 AKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRL 307
++ A+ + N P D + G R+
Sbjct: 225 SREIFTRAAVLDALRKISNDDFKKLCTCPPDRPAKIG--------------------SRV 264
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E C P+Y GRY KYSR +SQT WI++ +R+ E+S++E+I + + F +
Sbjct: 265 EVSCVHMPVYLAGRYCKYSRLLSQTPWILNGKRIMESSVQELITDVVTKHIPNEKIMFSS 324
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELL-VKEIESKINSLENKLVRVKNLKIVGSQ 426
+GRED+DVRMLG GRPF+ EI ++ + ++ IE +IN+ K + V +L+++
Sbjct: 325 SGREDVDVRMLGRGRPFVLEIFKTKKTHFTVADMEAIEQEINA-NTKDISVSDLQVISKD 383
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSP 486
++++GE K+K Y AL SRP+ +D ++ LK+ + QKTPIRVLHRR+
Sbjct: 384 MTQVLKDGEESKRKTYRALCCASRPITVDDVALVAGLKDVT----LKQKTPIRVLHRRNL 439
Query: 487 LEREKIINWMKIEKIA---GSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
ERE+ + M +E + F L++ TQAGTYIKEFVHGD GRT PS+GS L A
Sbjct: 440 AERERTVYEMSLEPVVVAEDGEHRFYLNITTQAGTYIKEFVHGDFGRTTPSLGSYLNMDA 499
Query: 544 EILQLDVTDVKMN 556
+IL+LDV ++ ++
Sbjct: 500 DILELDVEEIDLD 512
>gi|67481183|ref|XP_655941.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56473108|gb|EAL50554.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
gi|449705780|gb|EMD45758.1| coiledcoil domain containing protein [Entamoeba histolytica KU27]
Length = 490
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 63/431 (14%)
Query: 135 IAELVKKEGHQID-SFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKD 193
I E +K+ GH + +F + S P I E L Y+ R + S+ + R KD
Sbjct: 78 IHEALKESGHIYEGTFYINTSFPQAIFVREMALCRYITRTFPSKNYSPFR-------LKD 130
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQN--FVEKIEGCKRRKVDAKNC 251
L+F L ++ D KC + + ++LT +R +E G KR++
Sbjct: 131 TLRFILMTKIK---DWKCELES-PLKLTIEFTHQQLREDGDKLIEISVGKKRKR------ 180
Query: 252 LDTVKDKSAITGVENSVVSTTE---VIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLE 308
++T+ A+ +EN + E IP P + +P +
Sbjct: 181 METLTSTIAMNIIENIPLKIFEESFTIP--------------------PTRNEEDPGTYK 220
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
+ R IY GGRY KYSR +SQ++WII + M E SI + IG + D Y A+
Sbjct: 221 FIFERDYIYVGGRYRKYSRQLSQSQWIIQGKEMHEHSITKEIGEVLKKYFECDEYFMIAS 280
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREV--PSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
GRED+DVRMLG+GRPF+FE+ N R+V P EL +I+ +IN ++ ++V +L+ + ++
Sbjct: 281 GREDVDVRMLGNGRPFVFELHNPRKVTLPIELYA-QIQEEIN--KSPAIQVMHLQPIEAK 337
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKE-TVRCYQILQKTPIRVLHRRS 485
++++GE EK+K+Y AL+W S+KE ++ I QKTPIRVLHRRS
Sbjct: 338 DVDIIKKGEREKRKRYLALIW------------AESMKELKIKDLLIQQKTPIRVLHRRS 385
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
L RE++I +++ I G + LL + TQAGTYIKEFVHGDLGRT P+I +LGC A+I
Sbjct: 386 LLTRERMIYSLELHPIDG--HFGLLELETQAGTYIKEFVHGDLGRTTPNIIELLGCNADI 443
Query: 546 LQLDVTDVKMN 556
L LDV +V ++
Sbjct: 444 LSLDVVEVLLD 454
>gi|407042913|gb|EKE41616.1| hypothetical protein ENU1_049860 [Entamoeba nuttalli P19]
Length = 490
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 232/431 (53%), Gaps = 63/431 (14%)
Query: 135 IAELVKKEGHQID-SFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKD 193
I E +K+ GH + +F + S P I E L Y+ R + S+ + R KD
Sbjct: 78 IHEALKESGHIYEGTFYINTSFPQAIFVREMALCRYITRTFPSKNYSPFR-------LKD 130
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQN--FVEKIEGCKRRKVDAKNC 251
L+F L + ++ D KC + + ++LT +R +E G KR++
Sbjct: 131 TLRFILMSKIK---DWKCELES-PLKLTIEFTHQQLREDGDKLIEISVGKKRKR------ 180
Query: 252 LDTVKDKSAITGVEN---SVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLE 308
++T+ A+ +EN + + IP P + +P +
Sbjct: 181 METLTSTIAMNIIENIPLKIFEESFTIP--------------------PTRNEEDPGTYK 220
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
+ R IY GGRY KYSR +SQ++W+I + M E SI + IG + D Y A+
Sbjct: 221 FIFERDYIYVGGRYRKYSRQLSQSQWVIQGKEMHEHSITKEIGEVLKKYFECDEYFMIAS 280
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREV--PSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
GRED+DVRMLG+GRPF+FE+ N R+V P EL +I+ +IN ++ ++V +L+ + ++
Sbjct: 281 GREDVDVRMLGNGRPFVFELHNPRKVTLPIELYA-QIQEEIN--KSPAIQVMHLQPIETK 337
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKE-TVRCYQILQKTPIRVLHRRS 485
++++GE EK+K+Y AL+W S+KE ++ I QKTPIRVLHRRS
Sbjct: 338 DVDIIKKGEREKRKRYLALIW------------AESMKELKIKDLLIQQKTPIRVLHRRS 385
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
L RE++I +++ I G + LL + TQAGTYIKEFVHGDLGRT P+I +LGC A+I
Sbjct: 386 LLTRERMIYSLELHPIDG--HFGLLELETQAGTYIKEFVHGDLGRTTPNIIELLGCNADI 443
Query: 546 LQLDVTDVKMN 556
L LDV +V ++
Sbjct: 444 LSLDVVEVLLD 454
>gi|330802692|ref|XP_003289348.1| hypothetical protein DICPUDRAFT_98330 [Dictyostelium purpureum]
gi|325080552|gb|EGC34102.1| hypothetical protein DICPUDRAFT_98330 [Dictyostelium purpureum]
Length = 627
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 233/461 (50%), Gaps = 45/461 (9%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
IC CLGILQ T D F + +K G+Q +SL +S+P + L
Sbjct: 199 ICVCCLGILQDTNNKDL-----------FLEEFVDKMKNCGYQFRDYSLALSLPTSTLVR 247
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-----STFH 217
++ + Y++ Y + K + K+ +K+ L ++ +C S F
Sbjct: 248 DHAIFFYLRENYPTIYPNKTNFYEKVVEVKEGVKWVLG----PIIGRRCNFQFKPSSDFR 303
Query: 218 IRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPV 277
+ Y E S F+ ++G R+K + T ++KS+ ++V + I +
Sbjct: 304 ANMNYIH-EESKDDHLFLFDVQGKSRKK----QRVSTKRNKSSSQDSTSTVTEILDHISM 358
Query: 278 DEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIID 337
+ +NG P K V+ R + P+Y G+Y KY R++ Q+ W D
Sbjct: 359 KDFIANG----------NVPPKAVSTKYRYQLTFEHAPVYLSGKYNKYVRDLPQSPWQFD 408
Query: 338 EERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREV-PS 396
+ + S+EE+I ++ + + D F ++GRED+DVRMLG+GRPF E+ N ++ +
Sbjct: 409 DNVNIKLSVEELITKDLKELFKCDQVTFSSSGREDVDVRMLGNGRPFFIELVNPHKIFFN 468
Query: 397 ELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDED 456
+ +++E IN N ++V NL+I+ + ++++ KQK Y +VW S+PLQ D
Sbjct: 469 KPDFEKLEESINV--NTSIKVSNLQIITKKETNIIKDSGGTKQKDYRCIVWCSKPLQPSD 526
Query: 457 FQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT-Q 515
++S I Q+TP+RVLHRRS + R+K + +K I S +F L + Q
Sbjct: 527 LDILNSKTNIA----ISQQTPVRVLHRRSLMVRDKKVEKLKATYI--SPHFFTLDIINAQ 580
Query: 516 AGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
AGTYIKEFVHGDLGRT P+IG GC +ILQLDV +V ++
Sbjct: 581 AGTYIKEFVHGDLGRTTPNIGLFFGCDTDILQLDVLNVDLD 621
>gi|66827915|ref|XP_647312.1| hypothetical protein DDB_G0267794 [Dictyostelium discoideum AX4]
gi|60475415|gb|EAL73350.1| hypothetical protein DDB_G0267794 [Dictyostelium discoideum AX4]
Length = 640
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 184/553 (33%), Positives = 277/553 (50%), Gaps = 86/553 (15%)
Query: 44 LPTDAVKDLLSKEVCLRCIFRLFGM-QVPICS-SLSVKSLLCHVL---GEQADLHQN--- 95
+PT + L S +VC RCIFR + ++ I SL+ S L L +Q DL++N
Sbjct: 128 IPT--IVQLNSIKVCPRCIFRFLNIKELSIYQESLNTLSHLIQFLMFNQKQKDLNENKQK 185
Query: 96 -------------ISSVEPN--------ICRSCLGILQFTYCGDKERVVENESACDFAVA 134
+ +PN +C CLGILQ T +KE ++ +F V
Sbjct: 186 QQQQQQGGGEVENLKKYDPNMNERWNNFVCCCCLGILQDT--NNKELFLD-----EFIVK 238
Query: 135 IAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRS--EAWFKDRSISECSSTK 192
+ K G++ ++SL +SMP + L E + Y+ + + A KD+S+ E K
Sbjct: 239 M----KNSGYEFQNYSLALSMPTSTLIREQSIWYYLVDSFPNVYSADKKDKSMVEI---K 291
Query: 193 DALKFALTNPLETLLDVKCGIST-FHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNC 251
+ +K+ L + L + S+ F + Y E Q F+ ++ KR K
Sbjct: 292 EGVKWVLGPIISRQLFFQFKPSSDFRGNMQYIHEETKDDHQ-FLLSLQSTKRGGKRQKQS 350
Query: 252 LDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSET-HEFPLKKVNEPCRLECL 310
+K SA + NSV E +G+ P +T + + L +EP
Sbjct: 351 TKRIKVASADSS--NSVNELLSNTTKKEFELHGVVPPTPPKTKYSYELSFKHEP------ 402
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
++ G+Y K+ R++SQT W D+ +S++++I +I + DS F +GR
Sbjct: 403 -----VFLAGKYNKFVRDLSQTPWEYDD-----SSVQDLICKDIQETFKADSILFTTSGR 452
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVPSELLVK-----EIESKINSLENKLVRVKNLKIVGS 425
EDIDVRMLG GRPF EI N P + K ++ES IN K ++V NL+++
Sbjct: 453 EDIDVRMLGDGRPFYIEIVN----PHRIFFKNQDFEKLESSIND-STKKIKVSNLQLITK 507
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ T++++ KQK Y +W SR LQ D T+++LK+ Q+ Q TPIRVLHRRS
Sbjct: 508 KETTIIKDSGGTKQKNYRCFIWTSRILQPSDLDTLNNLKDI----QLHQNTPIRVLHRRS 563
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMC-TQAGTYIKEFVHGDLGRTNPSIGSILG-CRA 543
+ R K I+ K+ S +F+L + QAGTYIKEFVHGDLGRT P+IG +LG C A
Sbjct: 564 LMIRNKKIS--KLHATFISPHFFMLDIIDAQAGTYIKEFVHGDLGRTLPNIGLLLGNCEA 621
Query: 544 EILQLDVTDVKMN 556
+ILQLDV +V +N
Sbjct: 622 DILQLDVLNVDLN 634
>gi|442762285|gb|JAA73301.1| Putative pseudouridylate synthase, partial [Ixodes ricinus]
Length = 379
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 163/254 (64%), Gaps = 8/254 (3%)
Query: 304 PCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
P E C P+Y GRY KYSR +SQT WI++++R+ E S++E+I ++
Sbjct: 127 PLETEVTCVHMPVYLAGRYCKYSRLLSQTPWILNDKRIMETSVQELITEAVIRRIPNSRI 186
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEI-QNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
F ++GRED+DVRMLG GRPF+ EI + R ++ ++ IE +IN K ++V +L++
Sbjct: 187 VFSSSGREDVDVRMLGKGRPFILEIFEPKRATFTKSEMESIEKEINE-ATKDIKVNDLQV 245
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
+ ++++GE K+K+Y AL SRPL ED T+S +K+ V + QKTPIRVLH
Sbjct: 246 ISKSDTQVLKDGEESKRKRYTALCCASRPLTAEDSATVSKIKDLV----LKQKTPIRVLH 301
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ ERE+++ M +E + G+ F+L M TQAGTY+KEFVHGD GRT PS+G L
Sbjct: 302 RRNLAERERVVYDMSLEPLEGNK--FVLKMTTQAGTYVKEFVHGDFGRTVPSLGDYLNAE 359
Query: 543 AEILQLDVTDVKMN 556
+I++LDV ++ ++
Sbjct: 360 VDIVELDVEEIDLD 373
>gi|390334365|ref|XP_787517.3| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Strongylocentrotus purpuratus]
Length = 391
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 158/246 (64%), Gaps = 8/246 (3%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
C P++ GRY K+SR++SQT WI++ ER E+S+EE I I R Y+F ++GR
Sbjct: 143 CLHEPVFLAGRYTKHSRHLSQTPWILEGERKTESSVEEHICQPIQETLRAVDYRFASSGR 202
Query: 371 EDIDVRMLGSGRPFLFEIQNARE-VPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
ED+DVR LG GRPF+ E+ N R+ V KE++ +IN + V V++L+IVG
Sbjct: 203 EDVDVRTLGKGRPFVVEVLNPRKNVVCTEACKELQEEINRRTSD-VGVRDLQIVGRDATM 261
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
++EGE EK K Y ALV ++ P+ ED Q +++ +E V + QKTPIRVLHRR R
Sbjct: 262 KLKEGETEKSKSYMALVRVASPVSQEDLQLLNTDQEVV----LKQKTPIRVLHRRPLATR 317
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
E+ + M E++ + F L +CTQAGTYIKEFVHGDLGRT P++G+IL A+I LD
Sbjct: 318 ERSVYSMSTERVDDLN--FKLFLCTQAGTYIKEFVHGDLGRTQPNVGTILKTDADITMLD 375
Query: 550 VTDVKM 555
VT V +
Sbjct: 376 VTAVHV 381
>gi|212723320|ref|NP_001131786.1| uncharacterized protein LOC100193157 [Zea mays]
gi|194692528|gb|ACF80348.1| unknown [Zea mays]
Length = 126
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 112/127 (88%), Gaps = 4/127 (3%)
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
+MREGEAEKQKQY AL+W SR L D+D IS +KE +I+QKTPIRVLHRRSPLER
Sbjct: 1 MMREGEAEKQKQYTALIWTSRDLTDDDLHNISIMKEM----EIVQKTPIRVLHRRSPLER 56
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
++II+WM+IEKI GSS Y+LLH+CTQAGTYIKEFVHGDLGRT+PSIG+I+GCRAEILQLD
Sbjct: 57 KRIIHWMEIEKITGSSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGAIIGCRAEILQLD 116
Query: 550 VTDVKMN 556
VTDVKM+
Sbjct: 117 VTDVKMD 123
>gi|47209739|emb|CAF93724.1| unnamed protein product [Tetraodon nigroviridis]
Length = 575
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 178/297 (59%), Gaps = 16/297 (5%)
Query: 264 VENSVVSTTEVI-PVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECL-CFRTPIYFGGR 321
+ SV + V+ +D+ S L + PS P V+ C L+ + C T ++ GR
Sbjct: 284 LSQSVFTRMAVVKALDKISDLALLKHYPS-----PPAPVSSRCVLQDVQCLHTSLFIAGR 338
Query: 322 YLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSG 381
Y K+SRN+ QT W+I ER E+S+EE+I IL R D + F ++GRED+DVR LG+G
Sbjct: 339 YNKFSRNLPQTPWLIGGERRMESSVEELIAAPILATFRTDGFNFSSSGREDVDVRTLGTG 398
Query: 382 RPFLFEIQNA-REVPSELLVKEI-ESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQ 439
RPF E+ N R S ++++ E IN+ +K +RV++L++V + + M+EGE EK
Sbjct: 399 RPFAVELLNPHRSRVSRAEMRQLQEQTINASSDK-IRVRDLQMVTREATSRMKEGEEEKT 457
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIE 499
K Y ALVW + LQ ED I +K+ + QKTP+RVLHRR+ R+++++ M
Sbjct: 458 KSYTALVWTHKALQREDLSFIDDIKDLT----LNQKTPLRVLHRRALAVRQRLVHSMSAR 513
Query: 500 KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ +F L + TQAGTYIKEFVHGD GRT P++ +LG +IL+LDV V ++
Sbjct: 514 FV--DPHHFYLGLKTQAGTYIKEFVHGDFGRTKPNMCELLGTHTDILELDVESVDVD 568
>gi|255078626|ref|XP_002502893.1| predicted protein [Micromonas sp. RCC299]
gi|226518159|gb|ACO64151.1| predicted protein [Micromonas sp. RCC299]
Length = 615
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 152/252 (60%), Gaps = 9/252 (3%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEE--RMGEASIEEIIGGNILPMCRGDSYKFHA 367
L +R P+Y GGRYLK +R Q WI E +GE S++ + + R D K +A
Sbjct: 345 LTWRQPVYVGGRYLKRARGTPQAPWIDSETGVTIGEGSVQTSLDAVVSRAFRADGSKLNA 404
Query: 368 AGREDIDVRMLGSGRPFLFEIQNARE---VPSELLVKEIESKINSLENKLVRVKNLKIVG 424
AGREDIDVRMLG GRPF+ E+ N R + +E+ + + + V ++ +
Sbjct: 405 AGREDIDVRMLGGGRPFILEVHNPRRPNAAATAEARAAMEAALEAADGGAVAAVDVHVTD 464
Query: 425 SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+ + M E EK+K+Y A+ W +PL ED +S +K+ QI Q TP+RVLHRR
Sbjct: 465 AAAYRAMHEASEEKEKEYTAVCWAEKPLTLEDELMLSGIKD----LQIQQSTPVRVLHRR 520
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
+ + R + I + E++ ++++F L + TQAGTY+KEFVHGD GRT P++G +LGC A+
Sbjct: 521 TSMTRPRTIVSCRCERVPNAARFFTLRLKTQAGTYVKEFVHGDFGRTRPNVGEMLGCAAD 580
Query: 545 ILQLDVTDVKMN 556
I+QLDVTDV M+
Sbjct: 581 IIQLDVTDVVMD 592
>gi|328874308|gb|EGG22674.1| hypothetical protein DFA_04804 [Dictyostelium fasciculatum]
Length = 657
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/491 (29%), Positives = 244/491 (49%), Gaps = 79/491 (16%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
IC +CLG+LQ N F I + + K ++ +SL++++P ++
Sbjct: 199 ICSTCLGMLQ------------NLMDPTFQKDILDNIAKCPYEFHDYSLQLTLPISVTIR 246
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTN----PLETLLDVKCGISTFHI 218
E + Y+K++Y D+S + ++ L L L + +D+K I
Sbjct: 247 EYSVWYYLKQRYN------DKSYNSYTTGPAPLASVLLKDYLPKLFSKVDIKEAIKWILG 300
Query: 219 RLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVD 278
L R + IE ++++ + N KSA + V + I +
Sbjct: 301 PLIVKRFNFKFQPNT----IEKRQKQRYNNNNNKYNKNKKSAAEDSQQQVQDILDEISMK 356
Query: 279 EKSSNG-LQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWI-- 335
+ S+G + N P +++ + + +Y GRY KYSR++SQT +
Sbjct: 357 DYCSSGEVPPNTPKTFYQYNISYA-----------QASVYISGRYNKYSRSLSQTNMLPI 405
Query: 336 -------------IDEERMGE--------------ASIEEIIGGNILPMCRGDSYKFHAA 368
+ ++M E S++E+ I+ M DS +
Sbjct: 406 EYKKQLEQNPTTTVTNDKMDEPLITINNDDRQRLTGSVDELFNKKIMEMFACDSTNLVGS 465
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREV---PSELLVKEIESKINSLENKLVRVKNLKIVGS 425
GREDIDVRMLG GRPF E+ NAR++ P + L ++++ IN+ E+ +R+ +L+ +
Sbjct: 466 GREDIDVRMLGQGRPFFIELINARKIKYTPKDFL--DLQNAINN-EHSEIRLTDLQFITK 522
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ TL+ EG K+K Y +VW + L +ED + +S+LK+ ++ Q TP+RV+HRR+
Sbjct: 523 KQTTLLNEGGTTKKKIYRCVVWTDKELGEEDLKVLSTLKDI----ELKQNTPVRVMHRRT 578
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
+ER+K+I+ ++ E + F L + QAGTYIKEFVHGDLGRT P++GSIL C A+I
Sbjct: 579 LMERKKMIDKLEYEYVC--PHIFTLDVWAQAGTYIKEFVHGDLGRTTPNVGSILNCEADI 636
Query: 546 LQLDVTDVKMN 556
LQLDV +V+++
Sbjct: 637 LQLDVLNVELD 647
>gi|391344298|ref|XP_003746438.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Metaseiulus occidentalis]
Length = 517
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 148/507 (29%), Positives = 239/507 (47%), Gaps = 51/507 (10%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQ-NISSVEPNICRSCLGI 110
LL+ ++C C+ R G + + + C + E H+ V+ C SCLGI
Sbjct: 13 LLNHDLCSMCVLRYLGEKQ--------QEVYCKLFEEWQHPHEPQRKRVQRTTCPSCLGI 64
Query: 111 LQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYV 170
L D + E AVA++ D F L +S+P L + + L +
Sbjct: 65 L------DPGFIFETFETVADAVALSSCT------FDDFLLSISVPAVTLIRQRLVYLQL 112
Query: 171 KRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVK-CGISTFHIRLTYSRVEASI 229
K K+ E F + S++ + KD +K+ + + E V+ C ++F + +I
Sbjct: 113 KSKF--EYNFSEDSLA---TVKDCVKYVIGSLFEDEFKVQFCPAASFQV---------NI 158
Query: 230 RIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNE 289
++ + E K+ AK K K E ST + +++S D +
Sbjct: 159 VLKGEFREAEHQAIVKLSAKP-----KKKYKRNQKEEQEFSTKAITAFLQETS----DED 209
Query: 290 PSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEI 349
+FP + + P C IYF GRY K+SR +SQT WIID R + S+EE+
Sbjct: 210 FIREFKFPPESTSSPDAATATCGHNQIYFAGRYCKFSRELSQTPWIIDGARRMKDSVEEL 269
Query: 350 IGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINS 409
I + R F ++GRED+DVRMLG GRPFL E+ + + + + +
Sbjct: 270 ITNVVKRFVRCGRITFSSSGREDVDVRMLGEGRPFLLEVWSPKRIEWSAEECAEIEEEIN 329
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
+ V +++ + ++ GE K+K Y A ++ DF ++S+ V
Sbjct: 330 SSTSDISVNRFQLINREQIKDLKTGEENKRKFYCAYCVTAKDTSTVDFSKLTSIDNVV-- 387
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q TP+RVLHRR+ + RE+ I+ +E + +F L +CTQAGTY+KEFVHGD+G
Sbjct: 388 --LKQNTPMRVLHRRTAMVRERTIHSASVE--IQDANHFKLTVCTQAGTYVKEFVHGDMG 443
Query: 530 RTNPSIGSILGCRAEILQLDVTDVKMN 556
RT P++ +IL + +I LDVT V ++
Sbjct: 444 RTLPNVRTILAEQVDIEALDVTHVDLD 470
>gi|198413576|ref|XP_002122785.1| PREDICTED: similar to coiled-coil domain containing 139 [Ciona
intestinalis]
Length = 515
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 160/254 (62%), Gaps = 7/254 (2%)
Query: 304 PCRLECL-CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS 362
PC L+ + F TP++ GRY KYSR + QT WI+D +R E+S++E+I G++ D
Sbjct: 255 PCTLDQIGLFHTPVFVAGRYNKYSRTLPQTPWILDGKRKLESSVQELISGSVELKFGADR 314
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAR-EVPSELLVKEIESKINSLENKLVRVKNLK 421
F ++GRED+DVRMLG GRPF+ E+ + R S +K++++KINS LVRV++L+
Sbjct: 315 SNFSSSGREDVDVRMLGRGRPFILELIDPRISTCSTDEMKDLQTKINS-STDLVRVRDLQ 373
Query: 422 IVGSQGWTLMREGEAEKQKQYAAL-VWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
IV +++GE EK K Y+AL ++ P Q E + + L++ + Q TPIRV
Sbjct: 374 IVEKSDCKTLKQGEEEKTKSYSALCCFLDTPGQ-ETIEKLELLRQK-NGVIVYQNTPIRV 431
Query: 481 LHRRSPLEREKIINWMKIEKIAGS-SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
LHRR R + I+ M +++ S + F L +CTQAGTY+KEFVHGD GRT+PS+ ++
Sbjct: 432 LHRRPLASRPRCIHTMVADRLTDSEPRLFKLRLCTQAGTYVKEFVHGDFGRTSPSLRDLV 491
Query: 540 GCRAEILQLDVTDV 553
G +IL LDV V
Sbjct: 492 GAEVDILCLDVDSV 505
>gi|443703685|gb|ELU01120.1| hypothetical protein CAPTEDRAFT_94284, partial [Capitella teleta]
Length = 278
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 155/242 (64%), Gaps = 8/242 (3%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
C +F GRY KYSR +SQT W I+ R E+SIEE I + + + +F ++GR
Sbjct: 41 CLHESTFFAGRYNKYSRVLSQTPWFIEGVRKSESSIEEYISIPLKEIVKSTETRFSSSGR 100
Query: 371 EDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
ED+DV+MLG G PF+ E+ N R + ++ ++ ++ KINS ++ + V++L+ + +
Sbjct: 101 EDVDVKMLGRGLPFIIEVINPHRVIFNKEHMRILQQKINSSTDE-ISVRDLQEITREDTA 159
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
L++EGE EK K Y+AL W + E F I+++K+ V + QKTPIRVLHRR R
Sbjct: 160 LLKEGETEKVKHYSALCWCKDKINAESFTAINAMKDIV----LKQKTPIRVLHRRPYACR 215
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
E++++ + E I + LL + TQAGTYIKEFVHGDLGRT PS+ S+LG + +IL+L+
Sbjct: 216 ERMVHSIAAEVI--DDHFCLLKLVTQAGTYIKEFVHGDLGRTVPSMCSLLGTQCDILELN 273
Query: 550 VT 551
VT
Sbjct: 274 VT 275
>gi|452820854|gb|EME27891.1| hypothetical protein Gasu_45550 [Galdieria sulphuraria]
Length = 432
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 157/247 (63%), Gaps = 8/247 (3%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PIY GRY+K SR +SQ+ WI+D R+ SIEE + +L +F A GRED+
Sbjct: 187 APIYLQGRYIKLSRRLSQSPWIVDNIRLAPDSIEECVYEYLLHQLGARECRFTAGGREDV 246
Query: 374 DVRMLGSGRPFLFEIQNAR----EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
DVRMLGSGRPF+ E+ A+ V +E +++ E ++ N V+++ K+ + G+
Sbjct: 247 DVRMLGSGRPFIIELLEAKCTRSYVSNETFLRDWERQVFLRSNGQVQLQETKVSDAFGYA 306
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
++E E K+K Y +V+IS+ ++DE ++ ++ I Q TP+RVLHRRS +R
Sbjct: 307 SLKESEMTKRKTYRCIVYISKSVKDE--TGVAEYLGSLIPLTIEQYTPLRVLHRRSLAKR 364
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
+++I+ ++++ + +S + +L + T AGTY+KEFVHGDLGRT P +GS+LGC +ILQLD
Sbjct: 365 KRVIHEIRLKLL--NSHFAILDLVTDAGTYVKEFVHGDLGRTTPYLGSLLGCETDILQLD 422
Query: 550 VTDVKMN 556
V V ++
Sbjct: 423 VLHVHIS 429
>gi|291230480|ref|XP_002735188.1| PREDICTED: coiled-coil domain containing 139-like [Saccoglossus
kowalevskii]
Length = 462
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 229/463 (49%), Gaps = 81/463 (17%)
Query: 101 PNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTIL 160
P C SCLGILQ C D + F I +++ +Q ++ +S+P +L
Sbjct: 67 PFTCSSCLGILQI--CSDDK----------FLNEITGHIEEADYQFRNYVFAISLPLQLL 114
Query: 161 ENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCG-ISTFHIR 219
E+ + L++K K+ +K ++ +S K+ LK+ + L +L V + F I
Sbjct: 115 VREHSILLHLKDKF--SGLYKVKTTESIASIKEILKWVFSPMLADVLHVNYTFLGPFEIA 172
Query: 220 LTYSRVEASIRIQNFVEK-----IEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEV 274
L+++ E + + FV++ + KRRK+ S + + VST
Sbjct: 173 LSFTHPETASECELFVDRKEFIALHAKKRRKL------------SDVRHITKPSVST--- 217
Query: 275 IPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRW 334
+ + L D E +KK R++ F GRY KYSR +SQT W
Sbjct: 218 ------ALSKLGDEE--------MKK-----RVDVHLLMNYCVFSGRYNKYSRLLSQTPW 258
Query: 335 IIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-RE 393
I++ ER E+S+EE+I I + + D GRPF+ E N R
Sbjct: 259 ILEGERKTESSVEELICEKIKDVLQAD-------------------GRPFVVEYLNPHRS 299
Query: 394 VPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQ 453
+ + ++ +++ IN K + V++L+IV + ++EGE K K Y+AL+WI + +
Sbjct: 300 LLPQRVLTQLQKDIND-STKDIAVRDLQIVDKEEIGKLKEGELSKTKSYSALIWIDKKIT 358
Query: 454 DEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMC 513
ED + ++K+ ++ QKTPIRVLHRR R + ++ M E I Q+F L +C
Sbjct: 359 PEDISFLQNIKD----LKLEQKTPIRVLHRRPLAVRVRSVHTMSAEFI--DEQHFRLKLC 412
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TQAGTYIKEFVHGD GRT PS+G+++ +IL+LDV V ++
Sbjct: 413 TQAGTYIKEFVHGDFGRTQPSLGTLMKANTDILELDVESVNVD 455
>gi|242005765|ref|XP_002423732.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506923|gb|EEB10994.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 508
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 162/540 (30%), Positives = 248/540 (45%), Gaps = 63/540 (11%)
Query: 38 NDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQ-ADLHQNI 96
ND ++ + ++DL +C CI R + S V + +L Q D I
Sbjct: 5 NDMIKVI----IEDLAKNNLCNYCILRYLNEKNS-NSYNDVDGRIKKLLNAQDEDYLPEI 59
Query: 97 SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMP 156
+ N C +CLG+LQ + ++ V N V + G+ D + +S+P
Sbjct: 60 KKTKLNPCSACLGLLQLSDSSEQLNTVINS------------VIESGYDCDDVTFALSLP 107
Query: 157 PTILENENKLSLYVKRKYRS--EAWFKDRSISE---CSSTKDALKFALTNPLETLL--DV 209
+ L + L++ K++ E + I + S K+ K+ + + ++ +
Sbjct: 108 ISFLIRSRSIWLHLINKFKEFFENKYYPHEIKQEYLVVSIKEVWKWLSSQKIAKMIGKNA 167
Query: 210 KCGI-STFH--IRLTYS--RVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGV 264
G+ FH I + Y +E + + F E+ + K + T K+ + +
Sbjct: 168 NNGVDGNFHVNIHINYDDDNLETASLFKMFPEEFQYRNHHKRKFHGEILTRKNVEKML-L 226
Query: 265 ENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLK 324
E + S + PV K+ N F V C IY GRY K
Sbjct: 227 ETDLKSFDNIYPVPPKTPNTF----------FQFSTVQ--------CMHDSIYVAGRYNK 268
Query: 325 YSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPF 384
SRN+SQT W+I+ ER E+S+EEII I + KF ++GRED+DVR LG+GRPF
Sbjct: 269 LSRNLSQTPWMINGERRMESSVEEIIEKPISNYIKNSGTKFSSSGREDVDVRTLGNGRPF 328
Query: 385 LFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYA 443
+ EI N R+V + + EIE +IN N V V++L+IV + ++ GE K K Y
Sbjct: 329 VVEILNPRKVKIDQQYMLEIEKEINKSTND-VFVRDLQIVQKKDLHHIKAGEETKTKTYT 387
Query: 444 ALVWISRPLQD------EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMK 497
I D E +S +K+ V I Q+TPIRVLHRR R + + W+K
Sbjct: 388 CFCLIKLDNNDEIPEIKEKLNNLSQIKDLV----INQRTPIRVLHRRPLAVRPRTVYWLK 443
Query: 498 --IEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
+I + +F L + AGTYIKEFVHGD GRT P++ IL +IL LDV +V +
Sbjct: 444 ADFHEIKNNHLFFKLSLKVGAGTYIKEFVHGDFGRTTPNLSEILEKETDILALDVEEVAL 503
>gi|313220161|emb|CBY31022.1| unnamed protein product [Oikopleura dioica]
Length = 505
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 152/245 (62%), Gaps = 9/245 (3%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER-MGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
+P+Y GRY KYSR + QT W++D +R E S+EEII + +AGRED
Sbjct: 252 SPVYIAGRYQKYSRTLPQTPWLVDGKRHYSETSVEEIIAAPFVEATGAQRGVLTSAGRED 311
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
+DVR LG+GRPF+ E+ R++ + K + +K+N EN+ +++ ++ I+ G +
Sbjct: 312 VDVRTLGNGRPFIIELLKPRKLLATESAKILAAKVN--ENQDLKITDVCIIEKSGCKTLL 369
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
EGE +K+K+Y A + R + ED + +S + E V + QKTPIRVLHRR+ R +
Sbjct: 370 EGEVDKKKEYRAYCYSERKITSEDLKKLS-MSEVV----LKQKTPIRVLHRRNNDTRPRS 424
Query: 493 INWMKIEKIAGSSQ-YFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
I+ + ++ G S+ +F + + TQAGTYIKEFVHGD GRT P++ I GC +I+ LDVT
Sbjct: 425 IHKAEGKRWEGRSENWFYIDLLTQAGTYIKEFVHGDFGRTKPNVTEIFGCECDIVGLDVT 484
Query: 552 DVKMN 556
+V ++
Sbjct: 485 NVHLD 489
>gi|145356605|ref|XP_001422518.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582761|gb|ABP00835.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 276
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 306 RLECL--CFRTPIYFGGRYLKYSRNVSQTRWIIDE--ERMGEASIEEIIGGNILPMCRGD 361
R+ C+ F P++ GG Y+K R V Q++WI E R+G S+ E I +L +
Sbjct: 12 RVRCVLEAFHAPVHVGGWYVKLDRGVPQSQWISRETGARIGRGSVVEAIERVVLKGLGSN 71
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAR-EVPSELLVKEIESKINSLEN-KLVRVKN 419
KF+++GRED+DVRML GRPF ++ + + + S V +E +IN+ + VRV+
Sbjct: 72 GAKFNSSGREDMDVRMLSDGRPFALQVHDPKTPLASAENVAAMEREINAQSDITGVRVRG 131
Query: 420 LKIVGSQGWTL--MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
L + + M E EK+K Y A+V +SR ED + I+S V + Q TP
Sbjct: 132 LCFTTKENYHAVGMSSEEHEKEKSYVAIVRVSREATPEDHEKIASTSRLV----VQQSTP 187
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
RV HRR+ L R + I M E I GS F+L + TQAGTY+KEFVHGD GRT PS+G
Sbjct: 188 TRVAHRRADLVRPRTIVSMSSEPIPGSPDSFILRLRTQAGTYVKEFVHGDAGRTAPSLGD 247
Query: 538 ILGCRAEILQLDV 550
+LGCRAEI+QLDV
Sbjct: 248 LLGCRAEIIQLDV 260
>gi|380015748|ref|XP_003691858.1| PREDICTED: LOW QUALITY PROTEIN: putative tRNA pseudouridine
synthase Pus10-like [Apis florea]
Length = 503
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 256/529 (48%), Gaps = 66/529 (12%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGIL 111
L + CLRC FR G + C +K HV + + +IS + +C +CLGIL
Sbjct: 15 LYQQNCCLRCCFRFIGWRTLNCFEDPIK-FAKHVRYIETE---DISFNDEILCMACLGIL 70
Query: 112 QFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVK 171
Q +E+V++ I ++K+ + +F+ +++P I E L +
Sbjct: 71 QNKI---QEQVIK---------KIQVEIEKQNYDSGTFTCALTIPICISLRERFLRIQCA 118
Query: 172 RKYR-SEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIST-----FHIRLTYS-- 223
+ SE D I + S KD K+ +T +E + + ++T + LTY
Sbjct: 119 TQLNLSENTLLDLKI-KLQSVKDVWKWIMTPKIEQAIKKQMDLTTPSPFLIEVILTYKSN 177
Query: 224 --RVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
E ++I N + +RK D D K I + +
Sbjct: 178 EKECETLLKIYNESSNMGNKWKRKCD-----DNRFSKKNIETIMTKIT------------ 220
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRLE-CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
D E S+ + + N +E +C + I+ GGRY K SR +SQT W I+ E+
Sbjct: 221 -----DKEFSQHFKALSFETNTGIFIENIMCSHSSIFIGGRYNKLSRELSQTPWFINGEK 275
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
+ S+++I+ I + + S KF ++GRED+DVR + SGRPF E+ N R +E L
Sbjct: 276 KMQTSVQDILCNPIADIMKAQSIKFLSSGREDVDVRNIYSGRPFAVELINPRLTKITEEL 335
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+ ++ SKIN ++ V NLK++ ++EGE K K Y AL I R ++ +
Sbjct: 336 LSDLISKINLSSQQVQIVSNLKVLSKFDLKKLKEGENVKTKFYRALC-ICRN-ASKNMLS 393
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIAG-------SSQY 507
+ L ++ +I+QKTP+RVLHRR RE++I WMK +++ ++ +
Sbjct: 394 LEKL-NNLKYLKIIQKTPMRVLHRRPLSPRERLIYEMRARWMKPQELKNLNISSEDANIF 452
Query: 508 FLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
F+L + TQAGTY+KEFVHGD GRT PS+ IL +I+ LDVT + +N
Sbjct: 453 FILDIKTQAGTYVKEFVHGDFGRTKPSLCDILNVEIDIVALDVTGINLN 501
>gi|328787090|ref|XP_394978.3| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Apis
mellifera]
Length = 503
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 253/531 (47%), Gaps = 70/531 (13%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGIL 111
L + CLRC FR G + C +K HV + ++IS + +C +CLGIL
Sbjct: 15 LYQQNCCLRCCFRFIGWRTLNCFEDPIK-FAKHVRYIET---KDISFNDEILCMACLGIL 70
Query: 112 QFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVK 171
Q N+ I +KK+ + +F+ +++P I E L +
Sbjct: 71 Q------------NKIQEQVITKIQAEIKKQNYDSGTFTCALTIPICISLRERFLRIQCA 118
Query: 172 RKYR-SEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIST-----FHIRLTYS-- 223
+ SE D + + + KD K+ +T +E + + + T I LTY
Sbjct: 119 TQLNLSENTLLDLKV-KLQNVKDVWKWIMTPKIEQAIKKQVDLITPSPFLIEIILTYKSN 177
Query: 224 --RVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
E ++I N + + +RK D +K + +E + T
Sbjct: 178 EKECETLLKIYNELSNMGNKSKRKYD--------DNKFSKKNIETIMTKIT--------- 220
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRLE-CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
D E S+ + + N +E +C + I+ GGRY K SR +SQT W I+ E+
Sbjct: 221 -----DKEFSQHFKALSFETNNSILIENIMCSHSSIFIGGRYNKLSRELSQTPWFINGEK 275
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
+ S+++I+ I + + S KF ++GRED+DVR + SGRPF E+ N R +E L
Sbjct: 276 KMQTSVQDILCNPIADVTKAQSIKFLSSGREDVDVRNIYSGRPFAVELINPRLTKITEKL 335
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDE--DF 457
+ ++ +KIN ++ V NLK++ ++EGE K K Y AL I R
Sbjct: 336 LSDLINKINLSSQQVQIVSNLKVLSRFDLKKLKEGENVKTKFYRALC-ICRNASKNVLSL 394
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIAG-------SS 505
+ +++LK +I+QKTP+RVLHRR RE++I W+K +++ ++
Sbjct: 395 EKLNNLKH----LKIIQKTPMRVLHRRPLSPRERLIYEMRARWVKPQELKNLNISSEDAN 450
Query: 506 QYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+F+L + TQAGTY+KEFVHGD GRT PS+ IL +I+ LDVT + +N
Sbjct: 451 IFFILDIKTQAGTYVKEFVHGDFGRTKPSLCDILNVEIDIVALDVTGINLN 501
>gi|313228662|emb|CBY07454.1| unnamed protein product [Oikopleura dioica]
Length = 507
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 152/246 (61%), Gaps = 9/246 (3%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEER-MGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
+P+Y GRY KYSR + QT W++D +R E S+EEII + +AGRE
Sbjct: 253 HSPVYIAGRYQKYSRTLPQTPWLVDGKRHYSETSVEEIIAAPFVEATGAQRGVLTSAGRE 312
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
D+DVR LG+GRPF+ E+ R++ + K + +K+N EN+ +++ ++ I+ G +
Sbjct: 313 DVDVRTLGNGRPFIIELLKPRKLLATESAKILAAKVN--ENQDLKITDVCIIEKSGCKTL 370
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
EGE +K+K+Y A + R + ED + +S + E V + QKTPIRVLHRR+ R +
Sbjct: 371 LEGEVDKKKEYRAYCYSERKITSEDLKKLS-MSEVV----LKQKTPIRVLHRRNNDIRPR 425
Query: 492 IINWMKIEKIAGSSQ-YFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
I+ + ++ G S+ +F + + TQAGTYIKEFVHGD GRT P++ I GC +I+ LDV
Sbjct: 426 SIHKAEGKRWEGRSENWFYIDLLTQAGTYIKEFVHGDFGRTKPNVTEIFGCECDIVGLDV 485
Query: 551 TDVKMN 556
T+V ++
Sbjct: 486 TNVHLD 491
>gi|300176782|emb|CBK25351.2| unnamed protein product [Blastocystis hominis]
Length = 437
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 18/253 (7%)
Query: 312 FRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
+R PIY G YLK R +SQT WI+D ER E S+EE I + + YKFH+AGRE
Sbjct: 186 YRKPIYVTGNYLKLQRGLSQTPWIVDGERKTEGSVEEFILEAFRRVYKAVGYKFHSAGRE 245
Query: 372 DIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
D+DVRML GRPF+ E+++A+ SE + ++ IN+ K +++ +L+ + G+
Sbjct: 246 DVDVRMLFEGRPFVVEMEDAKRCDLSEQEYRNLQDSINN-NTKSIQIIDLRPCSAAGFEE 304
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
M+ K K Y A+++ P+ E + + + + I Q+TP+RVLHRRS L R+
Sbjct: 305 MKNAAEGKHKLYVAVIYTEDPITAEQLKKLDEIHDL----PIKQRTPVRVLHRRSLLTRD 360
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE------ 544
K++ MK + +S +F+L + GTYIKEFVHGDLGRT P+IG IL E
Sbjct: 361 KVVYGMKTTFV--NSHHFILEIEASGGTYIKEFVHGDLGRTRPNIGEILVGEREGSEGKN 418
Query: 545 ----ILQLDVTDV 553
ILQLDV V
Sbjct: 419 IDCDILQLDVKAV 431
>gi|189234068|ref|XP_970341.2| PREDICTED: similar to pseudouridylate synthase 10 [Tribolium
castaneum]
gi|270014433|gb|EFA10881.1| hypothetical protein TcasGA2_TC001704 [Tribolium castaneum]
Length = 474
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 153/247 (61%), Gaps = 16/247 (6%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
I+ GRY KYSRN+ QT W DE ++ +S++EI+ ++ + + S F ++GRED DV
Sbjct: 228 IFIAGRYCKYSRNLFQTPWANDEVQVINSSVQEILFKSLESVFKCSSLVFSSSGREDFDV 287
Query: 376 RMLGSGRPFLFEIQNAR--EVPSE---LLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
RMLG GRPF +I + + +P E L+ K+IE E L+ V++L+ + +
Sbjct: 288 RMLGRGRPFFVKICDPKVTTIPFEQFRLIEKQIE------ETNLIEVRDLQFISRKLLNN 341
Query: 431 MREGEAEKQKQYAALVWISRPLQ-DEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
++EGE KQK Y AL + +P + E + I+++K ++LQKTP+RV HRRS R
Sbjct: 342 IKEGEQFKQKTYRALCVVDKPEKIGEYIEKINNMKRV----KLLQKTPLRVYHRRSADVR 397
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
EK I M+ + G+S F L + TQAGTY+KEFVHGDLGRT PS+ I+G +I+ LD
Sbjct: 398 EKEIYNMEARPVTGASSLFELDVLTQAGTYVKEFVHGDLGRTRPSLREIMGGYVDIIALD 457
Query: 550 VTDVKMN 556
V D+ ++
Sbjct: 458 VLDIHLD 464
>gi|308811220|ref|XP_003082918.1| Predicted pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116054796|emb|CAL56873.1| Predicted pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 531
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 156/258 (60%), Gaps = 15/258 (5%)
Query: 306 RLECL--CFRTPIYFGGRYLKYSRNVSQTRWIIDE--ERMGEASIEEIIGGNILPMCRGD 361
R C+ F P++ GG Y+K R V Q+ W++ E +R+G S+ E I +L
Sbjct: 262 RARCIVEAFHEPVHVGGWYVKLDRGVPQSPWVMRETGKRVGRGSVVEAIESVVLDKFASR 321
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINS-LENKLVRVKN 419
KF+++GRED+DVRML GRPF ++ + R S + E+E IN+ + VRV+
Sbjct: 322 GAKFNSSGREDMDVRMLSEGRPFASQVHDPKRPTVSADEIAEMERTINAKCDQTGVRVRG 381
Query: 420 LKIVGSQGWTLMREG--EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
L + + + + + E+EK+K Y A+ ISR + ED +TI+++ V + Q TP
Sbjct: 382 LCLTTKEHYHAVGQHSEESEKEKSYVAICRISRRVTAEDHKTIAAVSNLV----VQQSTP 437
Query: 478 IRVLHRRSP--LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
RV+HRR+ +RE I++ M E I G+ +L + TQAGTYIKEFVHGD GRT PS+
Sbjct: 438 TRVVHRRTEHWCDREPIVH-MSSEPIPGAPDALILRLRTQAGTYIKEFVHGDGGRTKPSL 496
Query: 536 GSILGCRAEILQLDVTDV 553
G +LGC+A+ILQLDVT+V
Sbjct: 497 GDLLGCKAQILQLDVTEV 514
>gi|193704610|ref|XP_001943738.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Acyrthosiphon pisum]
Length = 467
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+Y GRY K+SR +SQT WI+D+ER E+S+EEII I D +KF A+GREDIDV
Sbjct: 222 VYIAGRYNKWSRTLSQTPWIVDQERRLESSVEEIISDPIKKRALADEFKFSASGREDIDV 281
Query: 376 RMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
RMLG GRPF E+ N ++ S +++EIE++IN+ + V V +L+ V + ++ G
Sbjct: 282 RMLGRGRPFAIELVNPKQTKFSYEVLREIENEINT--DPQVTVTHLQNVVREQLKELKSG 339
Query: 435 EAEKQKQYAALVWISRPLQD-EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
E K K Y AL ++ L D E + L +ILQ TPIRVLHRR+ + R + I
Sbjct: 340 EEFKIKVYKALCYVEGELPDLEKLNNCAPL-------EILQYTPIRVLHRRANMVRPRTI 392
Query: 494 NWMKIEK----IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL-GCRAEILQL 548
+ MK I +F + + TQAGTY+KEFVHGD GRTNP + ++ +IL L
Sbjct: 393 HSMKAVATKVGIDNGCSFFNVILSTQAGTYVKEFVHGDFGRTNPCLRTVFENDTVDILAL 452
Query: 549 DVTDVKMN 556
DV D++++
Sbjct: 453 DVLDIEID 460
>gi|156359836|ref|XP_001624970.1| predicted protein [Nematostella vectensis]
gi|156211779|gb|EDO32870.1| predicted protein [Nematostella vectensis]
Length = 252
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 153/249 (61%), Gaps = 18/249 (7%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
+ +C + GGRY KYSR + QT W+ID ER+ E+SI +I CR F +
Sbjct: 14 QIVCSHGSLLIGGRYNKYSRCLPQTPWLIDGERLKESSITLLITD-----CR-----FSS 63
Query: 368 AGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
+GREDIDVRMLG+GRPF+ E N R + E + +++ +INS K + V L+++
Sbjct: 64 SGREDIDVRMLGTGRPFVLEFVNPHRTLLDEDFLSDMQKQINS-STKEIAVSGLQVITKG 122
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSP 486
++++++GE +K K Y+AL+W + + ++ +K+ +I QKTP+RVLHRR
Sbjct: 123 EYSILKDGETKKTKCYSALIWTKELVPQTELDKLADIKD----LRIEQKTPLRVLHRRPL 178
Query: 487 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 546
R + ++ M ++I +F L + T AGTY+KEFVHGD GRT P++G++LG ++IL
Sbjct: 179 AVRVREVHTMSAQRI--DDHHFKLFLKTMAGTYVKEFVHGDFGRTKPNLGTLLGVESDIL 236
Query: 547 QLDVTDVKM 555
+LDV V +
Sbjct: 237 ELDVESVDV 245
>gi|449664085|ref|XP_002155895.2| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Hydra
magnipapillata]
Length = 304
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 164/275 (59%), Gaps = 8/275 (2%)
Query: 283 NGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMG 342
+ L+++E S+ FP V C + I+ GRY KYSR +SQT WII+ ER
Sbjct: 24 SNLKESEISKYISFPPLSVRSLCTFSVNTCQESIFIAGRYNKYSRELSQTPWIIEGERKT 83
Query: 343 EASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSEL-LVK 401
E+S++++I G + + KF ++GRED+DV MLG GRPF E+ N + E +V+
Sbjct: 84 ESSVQDLICGKMQEAVQASDNKFISSGREDVDVLMLGKGRPFAVELINPKVSGLERNIVQ 143
Query: 402 EIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTIS 461
E++ IN L+ V++L+++ ++EGE EK+K Y A +W P+ E ++
Sbjct: 144 ELQDAINK-STDLISVRDLQVMHRGAIQKLKEGEEEKKKLYRARIWCPLPISAEKIDSVC 202
Query: 462 SLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
LK V ++QKTPIRVLHRR + RE+ I + ++ ++ L + TQAGTY+K
Sbjct: 203 ILKNIV----LMQKTPIRVLHRRPLITRERTIYETNLTRV--DEFHYDLFITTQAGTYVK 256
Query: 522 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
EFVHGD GRTNPS+ ++L +IL+LDV +V+ +
Sbjct: 257 EFVHGDFGRTNPSLRTLLNADVDILELDVQNVEFD 291
>gi|342185807|emb|CCC95292.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 606
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 160/304 (52%), Gaps = 60/304 (19%)
Query: 301 VNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRG 360
++EP L C+ + I G Y K RN+SQ+ W + R+G S++E+I ILP
Sbjct: 301 LHEPAALSCVLKHSNIMLIGNYRKVRRNLSQSPWFANGNRVGSFSLQEVIANPILPFFFP 360
Query: 361 DS-------------------------------------------------YKFHAAGRE 371
+ YKFH+AGRE
Sbjct: 361 EGVTSVPYEEPFKETAPHGVKRPKQEKSQHPGPQKDNPHRTASEEVFGYGRYKFHSAGRE 420
Query: 372 DIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
D+DVRMLG+GRPF+ E I +RE + + +E +N E V + +L++ +
Sbjct: 421 DVDVRMLGTGRPFVLELISPSRECVTAQDLLLLEEAVNKSEGGSVEISDLRVTDANVLLR 480
Query: 431 MREGEAEKQKQYAALVW----ISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSP 486
+ K K+Y ++W I++P +DE F+ ++ TVR QI Q+TP+RVLHRRS
Sbjct: 481 LAHHSQSKVKKYRCVIWCSRAITKPEEDEHFKRVN----TVRDLQIHQRTPVRVLHRRSL 536
Query: 487 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 546
ER+++++ +++ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +G +L R +IL
Sbjct: 537 HERDRVVHSIQLTPL--NAHWFLMDLETQAGTYVKEFVHGDMGRTVPHLGQLLNGRTDIL 594
Query: 547 QLDV 550
QLDV
Sbjct: 595 QLDV 598
>gi|145489940|ref|XP_001430971.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398073|emb|CAK63573.1| unnamed protein product [Paramecium tetraurelia]
Length = 571
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/470 (28%), Positives = 240/470 (51%), Gaps = 49/470 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMP----- 156
N C C GILQ C + ++ +A+ + E+++K+ +Q ++F L+V P
Sbjct: 104 NKCVICQGILQ---CLEDQKF--------YAMLVDEILQKQ-YQYEAFKLQVKTPVGQQI 151
Query: 157 -PTILENENKLSLYVKRKYRSEAWFKDRSISECS-STKDALKFALTNPLETLLDVKCGIS 214
++ NE + +++ +++ S S + K +K+ + NPL L V I+
Sbjct: 152 RQILIVNE-----CISEIGQNDPFYEYISTSNVAIDIKACVKWIMCNPLSESLKVPSDIN 206
Query: 215 T--FHIRLTYSRVEASIR----IQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSV 268
F I L + + ++ ++ +++I+ K ++ K + D T EN +
Sbjct: 207 DDRFQISLNFESIGDDVKQFEQFKDIIQEIDDQKWQEKMIKKL--KMNDPQLKTETENRL 264
Query: 269 VS-----TTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYL 323
+ + +P + + + ++ +F + VN P +LE I+ G Y+
Sbjct: 265 LQKKNQQSQTFLPT-QNNLEKISKLNNAQLSQFKIINVNYPVKLEVTTSYQNIFIQGNYI 323
Query: 324 KYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRP 383
K R +SQT W I R+ E S+E+++ + + S KFH+ GREDIDVRMLG+GRP
Sbjct: 324 KLGRYISQTPWYIGGNRIYEDSVEDLVSAEACKIFKSSSVKFHSGGREDIDVRMLGNGRP 383
Query: 384 FLFEIQNAR---EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQK 440
F E+ + + ++ ++ +IESKINS +V+V L + + ++ E K K
Sbjct: 384 FAIELVDPHLGLQNQTQEILNQIESKINS--QNVVKVTPLTFTDTNIFGELKNSEINKVK 441
Query: 441 QYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEK 500
Y +V + + Q + +K+ V I QKTPIRVLHRR+ + R+KII+ + I++
Sbjct: 442 AYCCVVECKNIINGDLVQQANQIKDLV----IKQKTPIRVLHRRTQMVRDKIIHSLLIKQ 497
Query: 501 IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
I + ++ +++ + AGTYIKEF+H DL RT P++ S+L +I QLDV
Sbjct: 498 I--NEKWLQVYVLSSAGTYIKEFIHSDLDRTVPNLCSLLQNECDIYQLDV 545
>gi|290973019|ref|XP_002669247.1| predicted protein [Naegleria gruberi]
gi|284082792|gb|EFC36503.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 149/261 (57%), Gaps = 24/261 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWII---DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
IY G Y K R + Q+ W++ E+ S++ IGG + + DSYKF ++GRED
Sbjct: 275 IYISGYYRKLERGLPQSPWVMRGSKEDEQNTRSVDTYIGGPFMEYTKADSYKFDSSGRED 334
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSEL-LVKEIESKINSLENKLVRVKNLKI-VGSQGWTL 430
+VRMLG+GRPF+F I N R L VKEIE+ IN N + V +++ +
Sbjct: 335 KNVRMLGNGRPFVFAIHNPRRSHFTLEQVKEIENTINQRANGSIEVHTIQVHFNNLVCQK 394
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY-------QILQKTPIRVLHR 483
M+EG EK+K Y +VW L + T SLKE V Y I QKTP+RVLHR
Sbjct: 395 MKEGAEEKRKNYRCVVWCEAALTSD---TDPSLKEKVTNYLESIKDLDIGQKTPLRVLHR 451
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG--- 540
R+ R+KII+ +K + +S +L +CT AGTY+KEF+HGD GRT PS G++L
Sbjct: 452 RALHTRKKIIHSIKCTEFI-NSHAMVLDLCTSAGTYVKEFIHGDFGRTEPSFGTLLAKLF 510
Query: 541 -----CRAEILQLDVTDVKMN 556
++ILQLDV +++++
Sbjct: 511 ERSLPFDSQILQLDVMEIEIS 531
>gi|383847211|ref|XP_003699248.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like
[Megachile rotundata]
Length = 503
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 149/529 (28%), Positives = 251/529 (47%), Gaps = 66/529 (12%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGIL 111
L + CLRC FR G ++P C VK + D+ N + + +C +CLGIL
Sbjct: 15 LQQRNCCLRCCFRFLGWRMPDCFQDPVKF---AKRSKYIDIEDNFT--DDALCVACLGIL 69
Query: 112 QFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVK 171
Q +E V++ I + V+K+ + ++F + +P I E L +
Sbjct: 70 QN---KTQELVIQ---------KIQDEVQKQNYDSETFMCALKIPVCISIRERLLHIQCA 117
Query: 172 RKYR-SEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIST---FHIRLTYSRVEA 227
+ + SE + + + + KD K+ + +E + + ++T F I + +
Sbjct: 118 TELKLSEDTLLNLKV-KLQNIKDVWKWVMIPKIENAIKKQADLTTPSAFFIEIFLAYKNN 176
Query: 228 SIRIQNFVEKIEGCK----RRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSN 283
+ + G K +RK + C D ++ + +E + + T+ + + +
Sbjct: 177 ETECGSLLNMSRGLKPTTSKRK---RECND---NRFSRKCIETLMTNITDKVFAEYFKTV 230
Query: 284 GLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGE 343
+ + E LC + I+ GG+Y K SR +SQT W I+ E+
Sbjct: 231 SFETTDSIEVENI-------------LCSHSSIFIGGKYNKLSRKLSQTPWFINGEKKMP 277
Query: 344 ASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKE 402
S+++II ++ + KF ++GRED+DVR + GRPF E+ N R +E L+
Sbjct: 278 TSVQDIICNPMIEAVKPQCIKFLSSGREDVDVRNIHGGRPFAIELINPRMTKITENLLST 337
Query: 403 IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISS 462
+ +++N ++ NLKI+ + ++EGE K K Y AL I R D T+ S
Sbjct: 338 LVTQVNEASRQVQITSNLKILSTPDLKKLKEGENVKTKCYRALC-ICR---DASKNTV-S 392
Query: 463 LKE--TVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIAG--------SSQY 507
L+E ++ +I QKTPIRVLHRR R ++I W K E++ +++
Sbjct: 393 LEELNNLKRVKITQKTPIRVLHRRPLCPRVRLIYEMRARWAKPEELTNLLDTANEDVNKF 452
Query: 508 FLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
F+L + TQAGTY+KEFVHGD RT PS+ IL C +I+ LDVT + ++
Sbjct: 453 FVLDIKTQAGTYVKEFVHGDFKRTTPSLCDILNCEVDIVALDVTGINLD 501
>gi|403336698|gb|EJY67542.1| Putative tRNA pseudouridine synthase Pus10 [Oxytricha trifallax]
Length = 498
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 161/522 (30%), Positives = 254/522 (48%), Gaps = 74/522 (14%)
Query: 57 VCLRCIFRLF---GMQVPICSSLSVKSLLCHVLGEQADLHQNI--SSVEPNICRSCLGIL 111
VC RCIF LF +Q+ + + L +N+ ++ N C CLG+
Sbjct: 3 VCYRCIFMLFREYTLQIYRLEDFNA-------FRTEVGLPENLICKNIPLNKCTICLGVN 55
Query: 112 QFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVK 171
QF D +EN + LVK++G + F + S+ +I+ NK+ +
Sbjct: 56 QFC---DNPSNLEN---------VITLVKQQGFEFQDFKITFSI--SIIAYINKIIAICE 101
Query: 172 RKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-STFHIRLTY-SRVEASI 229
+ ++ FK+ K+ ++ + LDV + TF + + + +R +I
Sbjct: 102 AEQKNALDFKE-----------IYKWIMSPKIARRLDVPANLEGTFLVNVNFCNRDVTAI 150
Query: 230 RIQNF-VEKIEGCKRRKVDA-------------KNCLDTVKD--KSAITGVENSVVSTTE 273
QN V IE ++ D KN KD +SA T + +
Sbjct: 151 NDQNSEVSIIETLQQDLTDLGISQVKNQYGAKWKNKKQQEKDDLRSAKTQM-----GAEQ 205
Query: 274 VIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTR 333
+I + K+ L E + ++ ++ C + + GRY+K+SR VSQT
Sbjct: 206 IIQLLSKTPISLL-KELKIVKNLLNQNIDLMNLIQVECSQESMLLFGRYIKHSREVSQTP 264
Query: 334 WIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR- 392
W+I + + ++++ I N++ + + HAAGREDIDVRMLG GRPF+ E N +
Sbjct: 265 WLIGDREI--KNLQDEISVNLMDVFGSKTVYLHAAGREDIDVRMLGIGRPFVCEFINPKF 322
Query: 393 EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPL 452
+ + V E++ + S +V + KIV + + +++ E K K Y +VW+ R +
Sbjct: 323 SISVKDRVPEMQGLVTS---DVVFCHDFKIVDKKFFDDLKDIENSKAKAYCCVVWLQRRI 379
Query: 453 QDEDFQT-ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLH 511
++ + ++SL + +I Q TPIRVLHRRS + R+K I + E I + YF+LH
Sbjct: 380 TKKELEKRLNSLVDI----EIKQITPIRVLHRRSLMVRDKQIYKVHAEYI--NQHYFVLH 433
Query: 512 MCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+ AGTYIKEFVHGDLGRT PSIGSIL A+ILQLDVT V
Sbjct: 434 VLASAGTYIKEFVHGDLGRTTPSIGSILESEADILQLDVTQV 475
>gi|440293881|gb|ELP86928.1| coiled-coil domain containing protein, putative, partial [Entamoeba
invadens IP1]
Length = 435
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 201/402 (50%), Gaps = 63/402 (15%)
Query: 143 GHQIDS-FSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTN 201
GH+ + +S+ S P + E L Y+ RK+ S+ + R KD LKF LT
Sbjct: 88 GHEYEGKYSISTSFPQAVFLREQALVRYITRKFPSKNYQPFR-------IKDTLKFILTA 140
Query: 202 PL-----ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVK 256
L E +K + H +L R E S + +E K RK L
Sbjct: 141 QLPEWKYEIEAPLKLCVEFSHKQL---RDEDS-------KLLESVKLRKRRKDEVLTAAT 190
Query: 257 DKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPI 316
+ A+ + IP PS P++ N R+ R I
Sbjct: 191 AQQALERMSPEEYEKHFPIP-------------PS-----PMEGDNGNYRI--FFERDYI 230
Query: 317 YFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVR 376
Y GRY KYSR +SQ++WII+ + + SI IG + + D Y A+GRED+DVR
Sbjct: 231 YVAGRYRKYSRQLSQSQWIINGTLIHDHSISGEIGEVMKKYFKCDKYFLMASGREDVDVR 290
Query: 377 MLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
MLG+GRPF+ E+ N R+V SE +++ +IN ++ V+V +L++V ++ +++ GE
Sbjct: 291 MLGNGRPFVMELHNPRKVALSEEEYIQMQKEIN--QSPAVQVMHLQLVSNKDTEIIKNGE 348
Query: 436 AEKQKQYAALVWIS--RPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
K+K+Y A +W +PL+ ++ I QKTPIRVLHRRS L R++ I
Sbjct: 349 RSKRKKYLAFIWAEQMKPLKMDNL-------------VIHQKTPIRVLHRRSLLTRDRTI 395
Query: 494 NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
+K+ I + LL + T+AGTYIKEFVHGDLGRTNP+I
Sbjct: 396 YTLKLNPI--DDHFGLLELETEAGTYIKEFVHGDLGRTNPNI 435
>gi|355714589|gb|AES05052.1| pseudouridylate synthase 10 [Mustela putorius furo]
Length = 194
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 135/199 (67%), Gaps = 8/199 (4%)
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLE 411
++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V + +KE++ KIN+
Sbjct: 3 HLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSS 62
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ 471
NK ++V++L++V + M+EGE EK K Y+AL+W + +Q +D + ++ +KE +
Sbjct: 63 NK-IQVRDLQLVTREAIGHMKEGEEEKTKSYSALIWTNNTIQKKDIEFLNDIKE----LK 117
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I QKTP+RVLHRR R +II+ M+ + +F L++ TQAGTYIKEFVHGD GRT
Sbjct: 118 IDQKTPLRVLHRRPLAVRTRIIHSMESHYV--DDHHFRLYLKTQAGTYIKEFVHGDFGRT 175
Query: 532 NPSIGSILGCRAEILQLDV 550
P+IGS++ A+IL+LDV
Sbjct: 176 KPNIGSLMNVTADILELDV 194
>gi|299116903|emb|CBN75013.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 591
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 157/305 (51%), Gaps = 31/305 (10%)
Query: 265 ENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLK 324
E S + PV + PS+ P E E R PI+F GRY K
Sbjct: 294 EGSPAAIPAEAPVVRAAGPPPPSATPSDASTHPTSAGAE-ALCEVAIRRKPIHFWGRYTK 352
Query: 325 YSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPF 384
SR+V QT W G S++E + H AGRED+DVRMLG GRPF
Sbjct: 353 LSRSVPQTPWF-----KGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPF 407
Query: 385 LFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR---EGEAE---- 437
E+ V S V EI +++ SL + + +K G G + R G E
Sbjct: 408 CLEL-----VDSLRSVDEIAARLPSLADAVNTAGGVKNAGG-GVAVSRLQVSGPGELPSD 461
Query: 438 -------KQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQK-TPIRVLHRRSPLER 489
K+K Y +VW+SRP+ E+ + +L E ++Q+ TPIRVLHRR+ L+R
Sbjct: 462 VQAVGEGKRKHYRCVVWVSRPVGKEEL--VKALCEDAPEELVVQQATPIRVLHRRTLLDR 519
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
+ I M+ E I + +F L + T AGTYIKEFVHGDLGRT PSIGS+L CRA+ILQLD
Sbjct: 520 PRSIFGMRAEWI--NEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLD 577
Query: 550 VTDVK 554
VT+V+
Sbjct: 578 VTNVE 582
>gi|145511103|ref|XP_001441479.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408729|emb|CAK74082.1| unnamed protein product [Paramecium tetraurelia]
Length = 571
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 155/263 (58%), Gaps = 11/263 (4%)
Query: 291 SETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEII 350
++ + + VN P +LE I+ G Y+K R +SQT WIID ++ E SIE+++
Sbjct: 291 AQISSYKIVNVNYPVKLEVSTSYQNIFIKGNYIKLGRYISQTPWIIDGNKIYEDSIEDLV 350
Query: 351 GGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNARE---VPSELLVKEIESKI 407
+ + S KFH+ GREDIDVRMLG+GRPF E+ + + ++ ++ +IESKI
Sbjct: 351 SAEACKIFKPSSVKFHSGGREDIDVRMLGNGRPFAIELVDPHQGVLNQTQEILSQIESKI 410
Query: 408 NSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETV 467
NS +V+V L + + ++ E K K Y +V + + + + +K+ V
Sbjct: 411 NS--QNVVKVTPLTYTDTNIFGDLKNSETNKVKAYCCVVECKNAVNADLLEQANQIKDLV 468
Query: 468 RCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGD 527
I QKTPIRVLHRR+ + R+KII+ + I+KI + ++ L+++ + AGTYIKEF+H D
Sbjct: 469 ----IKQKTPIRVLHRRTQMVRDKIIHSLLIKKI--NEKWLLVYVLSSAGTYIKEFIHSD 522
Query: 528 LGRTNPSIGSILGCRAEILQLDV 550
L RT P++ S+L +I QLDV
Sbjct: 523 LDRTVPNLCSLLQNECDIYQLDV 545
>gi|170057736|ref|XP_001864614.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167877076|gb|EDS40459.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 491
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 225/461 (48%), Gaps = 43/461 (9%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C +CLG+ + V N S DF + + F+ +S+P I+
Sbjct: 59 NLCVACLGLFEPARLDALLEQVRNSS--DF----------KAYDCQFFNSSISLP--IVL 104
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIS--TFHIR 219
+ +LSL++ R A + S + + KDALK L LE +L + + ++
Sbjct: 105 HLRQLSLWLALLERFPARYDRNSPAPDVAVKDALKAMLNRKLEDVLGKPFSVHGVSVNVF 164
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
Y EA + + V K E RK + K+C ++A E TT +
Sbjct: 165 FEYGGEEAELGVLKQV-KPEVFVNRKAN-KHCRKEFITRNAF---ERHFTPTTVCWELFR 219
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDE 338
K P +E +LE + F P ++ GRY K SR +SQT WI+D
Sbjct: 220 KHV------------AVPPAVQDEGLKLEKISFSGPTVFLAGRYNKISRELSQTPWILDG 267
Query: 339 ERMGEASIEEIIGGNILPM--CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVP 395
+R E S++EI+ + P S F ++GRED+DVR LG GRPF+ EI A ++
Sbjct: 268 KRKMENSVQEIMAKVVAPYFGVADQSLIFSSSGREDVDVRCLGEGRPFVLEIPYAFKDYL 327
Query: 396 SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDE 455
E +E+E I++ +KL+ +K+L++V +++GE +K+K Y AL I P+
Sbjct: 328 KESAAEEMEQAIDA--SKLISIKDLQMVERDELVHIKQGEEDKRKFYRALCVIDEPVTA- 384
Query: 456 DFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQ 515
T+++L + I Q TP+RVLHRR L R + I +K + + ++ + TQ
Sbjct: 385 --TTLAALN-IAEPFTIEQWTPLRVLHRRPLLARPRTIYSVKAFASQANERAIVVDVVTQ 441
Query: 516 AGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
AGTYIKE VHGD GRT PS SI+G +I LDV + ++
Sbjct: 442 AGTYIKELVHGDFGRTKPSFTSIIGRAIDIHALDVMAIDLD 482
>gi|332017858|gb|EGI58518.1| Putative tRNA pseudouridine synthase Pus10 [Acromyrmex echinatior]
Length = 504
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/529 (27%), Positives = 247/529 (46%), Gaps = 68/529 (12%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLH----QNISSVEPNICRSC 107
L S+ CLRC FR G + C C A L ++ +S+E C +C
Sbjct: 16 LKSQGCCLRCCFRFIGYRTSEC--------YCKPSEFAAQLSYTDIKDDASMEETTCIAC 67
Query: 108 LGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLS 167
LG+LQ +++ + IAE VK++ + +F+ +++P ++ E+ L
Sbjct: 68 LGVLQ------------DKAQKNVITKIAEKVKEKDYDCITFTCALTVPVSVKLREHILY 115
Query: 168 LYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI---STFHIRLTYSR 224
Y+ ++ ++ + KD K + LE + S F I +
Sbjct: 116 AYMSKEMDIHKSILSTFKTKLHNVKDIWKSFIIPQLEQATGKHADLLTPSPFLIEVLLMY 175
Query: 225 VEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNG 284
+ + + + + +G ++ + C D +K + V+ ++ T DE+
Sbjct: 176 ADDEMIFKELINEHKGGNNKRQKKRKCND---NKFSRKNVDTLLIQMT-----DEQF--- 224
Query: 285 LQDNEPSETHEFPLKKVNEPCRL---ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERM 341
F + ++ + + LC + I+ GGRY K SR +SQT W+++ E+
Sbjct: 225 --------MRHFTISQIIPKTFVYVDDVLCSHSSIFIGGRYNKLSRKLSQTPWLVNGEKK 276
Query: 342 GEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR--EVPSELL 399
E S+++++ I M + +S KF ++GRED+DVR + GRPF E+ N R + +ELL
Sbjct: 277 VETSVQDLLCNPIAEMVKAESIKFLSSGREDVDVRNIYGGRPFAIELLNPRMTNITNELL 336
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+ + S IN ++ NLK++ ++EGE K K Y AL + R +
Sbjct: 337 MC-LTSSINQSTKQVQITSNLKVLSRFDLKKLKEGENVKTKFYRALC-VCRDVSG-GLPP 393
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIA--------GSSQ 506
+ L E + +I+Q+TP+RVLHRR R +II W K ++ +
Sbjct: 394 LEHLNE-LENVKIIQRTPLRVLHRRPLSPRTRIIYKMRARWAKSHELKELLSTAAESTDT 452
Query: 507 YFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
+F+L + TQAGTY+KEFVHGD GRT PS+ L +I+ LDVT + +
Sbjct: 453 FFVLDVETQAGTYVKEFVHGDFGRTKPSLCDFLNNEVDIVALDVTGINL 501
>gi|350406808|ref|XP_003487891.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Bombus
impatiens]
Length = 501
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 152/523 (29%), Positives = 239/523 (45%), Gaps = 67/523 (12%)
Query: 58 CLRCIFRLFGMQVPICSSLSVKSL--LCHVLGEQADLHQNISSVEPNICRSCLGILQFTY 115
CLRC FR G + C +K ++ E + ++ C +CLGILQ
Sbjct: 20 CLRCCFRFVGWRTLDCYEDPIKYAKDAGYIKAEDISFNDDVP------CITCLGILQ--- 70
Query: 116 CGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLY-VKRKY 174
N++ I V K+ + +F +++P I E L + R
Sbjct: 71 ---------NKTQEQVIGKIQVEVDKQNYDSGTFICALTIPVCISVRERFLHIQCATRLN 121
Query: 175 RSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIST-----FHIRLTYSRVEASI 229
SE D I + S KD K+ + LE + + T I LTY E
Sbjct: 122 LSEDALLDFKI-KLQSVKDVWKWIMIPKLELAIKKQVDSMTPSPFLIEIILTYKFNEKEC 180
Query: 230 RIQNFVEKIE--GCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQD 287
++I G KR++ +N ++ +T + + E + S D
Sbjct: 181 ETLLLCKEINNTGNKRKRKYNENRFSRKSIETLMTKIIDK-----EFFQYFKAVSFDTSD 235
Query: 288 NEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIE 347
N E +C + I+ GGRY K SR +SQT W I+ E+ + S++
Sbjct: 236 NINVEN---------------IICSHSSIFIGGRYNKLSRELSQTPWFINGEKKMQTSVQ 280
Query: 348 EIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESK 406
+I+ I + + S KF ++GRED+DVR + SGRPF E+ N R +E L+ + +K
Sbjct: 281 DILCNPIAEVTKAQSIKFLSSGREDVDVRNIYSGRPFAVELINPRMTKITEDLLSNLVNK 340
Query: 407 INSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDE-DFQTISSLKE 465
IN ++ NLK++ ++EGE K K Y AL ++ + +++LK
Sbjct: 341 INQSSKQVQITSNLKVLSKYDLKRLKEGENVKTKFYRALCVCRNSSKNVLSLEKLNNLKR 400
Query: 466 TVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIA-------GSSQYFLLHMC 513
+I+QKTP+RVLHRR RE++I W++ +++ +S +F+L +
Sbjct: 401 V----KIIQKTPVRVLHRRPLSPRERLIYEMRARWVEPQELKKLDITTEDASMFFVLDIK 456
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TQAGTY+KEFVHGD GRT PS+ IL +I+ LDVT + +N
Sbjct: 457 TQAGTYVKEFVHGDFGRTKPSLCDILNVEIDIVALDVTGINLN 499
>gi|157125968|ref|XP_001654471.1| hypothetical protein AaeL_AAEL010362 [Aedes aegypti]
gi|108873445|gb|EAT37670.1| AAEL010362-PA [Aedes aegypti]
Length = 496
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/462 (30%), Positives = 230/462 (49%), Gaps = 45/462 (9%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C +CLGI + +S D + +E + ++ F+ + +P I+
Sbjct: 66 NVCVACLGIFESDLM---------QSLLDQVGSSSEFKR---YECQGFTSSIFLP--IVF 111
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIS--TFHIR 219
+ +LSL++ + F+ + S KDA K L LE L ++ ++
Sbjct: 112 HLRQLSLWIALMEKFPGRFEQDLPAPDVSVKDAFKMVLNRKLEEALGKPFSVNGVAINVL 171
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
Y++ + IR+ V K E RK + K+C ++A +N S+ +
Sbjct: 172 FKYAKDDEEIRLLAKV-KPEVFVNRKAN-KHCRKEFITRNAFE--KNFTPSSLSL----- 222
Query: 280 KSSNGLQDNEPSETH-EFPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIID 337
E H P ++ LE + F P ++ GRY K SR +SQT W+I+
Sbjct: 223 ---------EQYRKHISVPPAIQDDGIVLEKITFTGPTVFLAGRYCKISRELSQTPWVIE 273
Query: 338 EERMGEASIEEIIGGNILPM--CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REV 394
+R E S++EI+ + P DS F ++GRED+DVR LG GRPF+ EI A R+
Sbjct: 274 GKRKMENSVQEIMTAVVAPYFEVPEDSLIFSSSGREDVDVRCLGEGRPFVLEIPGAFRDF 333
Query: 395 PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQD 454
E E+ES I+ ++K + VK+L++V + T ++ GE K+K Y AL + RP+
Sbjct: 334 LEESAAAEMESAID--KSKQISVKDLQLVDREELTHIKHGEESKRKFYRALCVLDRPVSL 391
Query: 455 EDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT 514
E + ++ ++E + I Q TP+RVLHRR L R + I+ +K + + ++ + T
Sbjct: 392 EVLKALN-IEEP---FVIEQWTPLRVLHRRPLLPRPRTIHSVKAFACRNNERAIVVDVVT 447
Query: 515 QAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
QAGTYIKE VHGD GRT PS SI+G +I LDV + ++
Sbjct: 448 QAGTYIKELVHGDFGRTKPSFKSIIGQPIDIHALDVMAIDLD 489
>gi|340721264|ref|XP_003399044.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Bombus
terrestris]
Length = 501
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 149/523 (28%), Positives = 239/523 (45%), Gaps = 67/523 (12%)
Query: 58 CLRCIFRLFGMQVPICSSLSVKSL--LCHVLGEQADLHQNISSVEPNICRSCLGILQFTY 115
CLRC FR G + C +K ++ E + I C +CLGILQ
Sbjct: 20 CLRCCFRFVGWRTLDCYEDPIKYAKDAGYIKAEDTSFNDEIP------CITCLGILQ--- 70
Query: 116 CGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYR 175
N++ I V K+ + +F +++P I E L + +
Sbjct: 71 ---------NKTQEQVIGKIQVEVDKQNYDSGTFICALTIPVCISVRERFLHIQCATQLN 121
Query: 176 -SEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIST-----FHIRLTYSRVEASI 229
SE D + + S KD K+ +T LE + + T I LTY E
Sbjct: 122 LSEDALLDFKV-KLQSVKDVWKWIMTPKLELAIKKQVDSMTPSPFLIEIILTYKFNEKEC 180
Query: 230 RIQNFVEKIE--GCKRRKVDAKNCLDTVKDKSAITGV-ENSVVSTTEVIPVDEKSSNGLQ 286
+ G KR++ +N ++ +T + + + + D S ++
Sbjct: 181 ETLLLCKGTNNTGNKRKRKYNENRFSRKSIETLMTKIIDKEFFQYFKAVSFDTSDSINVE 240
Query: 287 DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASI 346
+ +C + I+ GGRY K SR +SQT W I+ E+ + S+
Sbjct: 241 N---------------------IICSHSSIFIGGRYNKLSRELSQTPWFINGEKKMQTSV 279
Query: 347 EEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIES 405
++I+ I + + S KF ++GRED+DVR + SGRPF E+ N R +E L+ + +
Sbjct: 280 QDILCNPIAEVTKAQSIKFLSSGREDVDVRNIYSGRPFAVELVNPRMTKITEELLSNLVN 339
Query: 406 KINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKE 465
KIN ++ NLK++ ++EGE K K Y AL + R ++ ++ L +
Sbjct: 340 KINQSSKQVQITSNLKVLSKYDLKRLKEGENIKTKFYRALC-VCRN-ASKNVLSLEKLND 397
Query: 466 TVRCYQILQKTPIRVLHRRSPLEREKII-----NWMKIEKIA-------GSSQYFLLHMC 513
R +I+QKTP+RVLHRR RE++I W++ +++ +S +F+L +
Sbjct: 398 LKRV-KIIQKTPVRVLHRRPLSPRERLIYEMRARWVEPQELKKLDINTEDASMFFVLDIK 456
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TQAGTY+KEFVHGD GRT PS+ IL +I+ LDVT + +N
Sbjct: 457 TQAGTYVKEFVHGDFGRTKPSLCDILNVEIDIVALDVTGINLN 499
>gi|340058848|emb|CCC53218.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 613
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 165/337 (48%), Gaps = 61/337 (18%)
Query: 274 VIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTR 333
V P +++ D + +T +F L + + C T I G Y K R +SQ+
Sbjct: 280 VYPYLKQTGCYTGDTDARQTRQFLLSDL---AAVSCALQHTNIMLIGNYRKMRRGLSQSP 336
Query: 334 WIIDEERMGEASIEEIIGGNILPMCRGDS------------------------------- 362
W +E R+G S++EII ILP D
Sbjct: 337 WFTNEGRVGTYSLQEIIANPILPFFFPDGVTSVNPTVTQSGAAEHSAKLPRHEASDAQAS 396
Query: 363 ----------------------YKFHAAGREDIDVRMLGSGRPFLFE-IQNAREVPSELL 399
YKFH+AGRED+DVRMLG GRPF+ E I +RE SE
Sbjct: 397 LADASSNDPLQLAAKEVFGHGRYKFHSAGREDVDVRMLGCGRPFVLEVIGPSRERVSEAD 456
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+ E +NS + V + +L++ S + K K+Y +VW SR + + + Q
Sbjct: 457 LANFEQAVNSSDGGSVEISHLRVASSDVLLRLARHSESKVKKYRCVVWCSRAITNPE-QD 515
Query: 460 ISSLKETVRC-YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ + C I Q+TPIRVLHRRS R+++I+ +K++ + ++ +F++ + TQAGT
Sbjct: 516 VHIMATNSVCDLTIEQRTPIRVLHRRSLHARKRVIHSLKLKPL--NAHWFVMDLETQAGT 573
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
Y+KEFVHGD+GRT P +G +L R +I+QLDV D+ +
Sbjct: 574 YVKEFVHGDMGRTVPHLGQLLNARTDIVQLDVLDMAI 610
>gi|357613883|gb|EHJ68766.1| hypothetical protein KGM_00616 [Danaus plexippus]
Length = 385
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 152/272 (55%), Gaps = 26/272 (9%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM-------CR 359
+ +C PIY GRY+K SRN+ Q+ W++D +R+ +S++EII G I C
Sbjct: 112 VSVICTHAPIYVCGRYVKLSRNLPQSPWVLDGKRVLPSSVQEIIFGPIAKFYNFSDVDCE 171
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVK 418
G KF AAGRED+DVR LG GRPF EI + RE+ SE L + + S E V VK
Sbjct: 172 G-RLKFIAAGREDVDVRCLGDGRPFAIEITDPKRELTSEELNEACDMISTSEE---VVVK 227
Query: 419 NLKIVGSQGWTLMREGEAEKQKQYAAL-VWISRPLQDE------------DFQTISSLKE 465
L + + L+++GE K K Y AL + ++ D+ D Q I+ KE
Sbjct: 228 KLVPINREDLALLKKGEETKSKTYEALCIKLTHSKHDDCPPDSPITVTPTDLQLINDYKE 287
Query: 466 TVRC-YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524
+ I QKTP+RVLHRR L R++ I M + Q F L + T AGTY+KE+V
Sbjct: 288 SDDVTMTISQKTPLRVLHRRPLLVRKREILEMSAVPVPEHPQLFRLFVRTSAGTYVKEWV 347
Query: 525 HGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
HG+LGR+ PS+G ++G R ++L LDVT V +
Sbjct: 348 HGELGRSTPSLGDVMGSRVDLLALDVTAVHLQ 379
>gi|384485547|gb|EIE77727.1| hypothetical protein RO3G_02431 [Rhizopus delemar RA 99-880]
Length = 490
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 153/252 (60%), Gaps = 16/252 (6%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P Y GGRYLK+SR SQT W + ++ E S+ + + R D KF +AGRED
Sbjct: 222 APTYIGGRYLKFSREYSQTPWSVRGAKLAENSVSDCFEL-VKKYHRADDAKFGSAGREDA 280
Query: 374 DVRMLGSGRPFLFEIQNAREVP--SELLVKEIESKINS--LENKLVRVKNLKIVGSQGWT 429
+VRMLG+GRPF E+ N R +P S+ K++E +IN L V+V++L V +
Sbjct: 281 NVRMLGTGRPFFLELVNPR-IPRLSDEEYKKLEDEINQSPLHKDAVQVRHLTYVEPKHLR 339
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTI--SSLKETVRCYQILQKTPIRVLHRRSPL 487
+++EGE +K K+Y ALVW+S PL DE + I +S KE C I QKTPIRV RR+ +
Sbjct: 340 IIKEGEEKKTKKYRALVWLSEPLTDELVKHINEASSKE---C-PIQQKTPIRVFQRRAAI 395
Query: 488 EREKIINWMKIEKIAGS---SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR-A 543
R K I I +++ + + + M QAGTYIKEFVHGDLGRT P++ +I G A
Sbjct: 396 IRPKTIYSANIARLSDKPEEAHFGVFEMHAQAGTYIKEFVHGDLGRTKPNLATIAGIHSA 455
Query: 544 EILQLDVTDVKM 555
++L+LDV DV +
Sbjct: 456 DLLELDVMDVDL 467
>gi|195433096|ref|XP_002064551.1| GK23763 [Drosophila willistoni]
gi|194160636|gb|EDW75537.1| GK23763 [Drosophila willistoni]
Length = 497
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 152/258 (58%), Gaps = 10/258 (3%)
Query: 303 EPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGD 361
EP +LE + PI GRY K SR +S T W+++ +R E SIEEII NI +
Sbjct: 235 EPLQLESITLTGPIVCVAGRYRKLSRELSHTPWVLNGQRQMEDSIEEIIIRNISQHFTEE 294
Query: 362 --SYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVK 418
+ F ++GRED+DVR LG+GRPF+ EI NA R S+ + E+E ++ NK V ++
Sbjct: 295 QGNITFMSSGREDVDVRCLGNGRPFVLEIPNALRLSLSKQVAYEMEQSVDK-SNK-VSIR 352
Query: 419 NLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPI 478
+L++V T ++ GE +K+K Y AL + P+ E + + + + I QKTPI
Sbjct: 353 DLQVVPRDQITYIKTGEEQKKKHYRALCALKEPVTLEILEKL----QISEPFDIQQKTPI 408
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RVLHRR R + I ++ + + ++ + TQAGTY+KE VHG+ GRTNPSI SI
Sbjct: 409 RVLHRRPLHTRPRTIYSLRARVQRDNLKSLVIDIVTQAGTYVKELVHGEFGRTNPSISSI 468
Query: 539 LGCRAEILQLDVTDVKMN 556
+G +IL LDV ++++
Sbjct: 469 IGKPIDILALDVESIELD 486
>gi|312079444|ref|XP_003142176.1| hypothetical protein LOAG_06592 [Loa loa]
gi|307762660|gb|EFO21894.1| hypothetical protein LOAG_06592 [Loa loa]
Length = 465
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 155/274 (56%), Gaps = 24/274 (8%)
Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE--ERMGEASIEEIIGGN 353
+ + + PC R+P++ GRY K+SRN+SQ+ W ++ S+ E
Sbjct: 197 YKMASPSTPCYYTVSFERSPLFIAGRYCKFSRNMSQSPWSASTNIRKITGHSVSEKFEAP 256
Query: 354 ILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPS------ELLVKEIESKI 407
+ D +F A+GREDIDVRMLG+GRPF+ ++ N + + S + +K +E I
Sbjct: 257 FIKETGCDVARFVASGREDIDVRMLGNGRPFVLQLINPKRIFSFQRHNLKTTLKRMEDSI 316
Query: 408 N-SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKET 466
N SL+ K+V LK + S +L++ G+ E++K Y + +R + D +LKE
Sbjct: 317 NKSLDVKVV--PGLKQITSDQASLIKNGQDERRKLYTGYCYSTRKIDD------FALKEL 368
Query: 467 VR--CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524
+++QKTP+RVL RR LER ++I ++ K+ +FL+ M TQAGTY+KEFV
Sbjct: 369 YHKAPIEVIQKTPVRVLKRRPLLERRRMIFFIAALKL--DDYHFLVRMETQAGTYVKEFV 426
Query: 525 HGDLGRTNPSIGSILGC---RAEILQLDVTDVKM 555
HGD GRT PS+ +LG + +IL+LDV V M
Sbjct: 427 HGDFGRTRPSLADLLGVECGKVDILELDVEGVDM 460
>gi|146079761|ref|XP_001463855.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134067943|emb|CAM66226.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 720
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 151/311 (48%), Gaps = 59/311 (18%)
Query: 305 CRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIE----------------- 347
R+ C T IY G Y K RN+SQ+ W ++ +R+G S++
Sbjct: 409 ARVSCRLHHTNIYLMGSYRKMMRNMSQSPWFLNGQRIGSFSLQEVIANPLLPFFFPDMPA 468
Query: 348 -----------------EIIGGNILPMCRG----------------------DSYKFHAA 368
E+ L + RG + YKFH+A
Sbjct: 469 LPPETAESPALPARDEGELTSAAPLAVERGAHATRWQAVTPSVASSNLVFGYNRYKFHSA 528
Query: 369 GREDIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
GRED+DVRMLG GRPF+ E + RE +E ++ +E+ I S V V+ L+ +
Sbjct: 529 GREDVDVRMLGEGRPFVLEFVSPIRERFTEEDLRRLEASICSSHEGSVEVRQLRRTDADI 588
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
+ K KQY ++W SR + D +R I QKTP+RVLHRRS
Sbjct: 589 TVRLARHSESKVKQYRCVIWSSRAIDDVATDPHVRTIHAMRDLPIQQKTPLRVLHRRSLH 648
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R ++I+ M++ + ++ +FLL + TQAGTY+KEFVHGD+GRT P +G +L R +I+Q
Sbjct: 649 RRPRLIHSMRLTPL--NTHWFLLDLETQAGTYVKEFVHGDMGRTTPHLGMLLNARTDIIQ 706
Query: 548 LDVTDVKMNCF 558
LDV + ++ F
Sbjct: 707 LDVVGMAIHDF 717
>gi|194766425|ref|XP_001965325.1| GF24546 [Drosophila ananassae]
gi|190617935|gb|EDV33459.1| GF24546 [Drosophila ananassae]
Length = 493
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGN 353
+ P V EP L+ + + P+ GRY K +R +S T W+++ +R+ E SIEEII N
Sbjct: 229 QIPSPIVEEPLELKNIELQGPLVCVAGRYRKVNREISHTPWVLNGQRVMEDSIEEIIIRN 288
Query: 354 ILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSL 410
I P + + F ++GRED+DVR LG GRPF EI N+ R S+ ++E ++
Sbjct: 289 IGPHFTEKPEKIIFMSSGREDVDVRCLGKGRPFCLEIPNSIRSSLSQEQAYKMEQAVD-- 346
Query: 411 ENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY 470
E+ V + NL++V + + ++ GE +K+K Y AL + P+ E + + + +
Sbjct: 347 ESGKVSIVNLQVVAREELSHIKTGEEQKKKFYRALCALKEPVTVEILENL----QISESF 402
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGR 530
I QKTPIRVLHRR R + I +K G+ Q ++ + TQAGTYIKE VHG+ GR
Sbjct: 403 DIQQKTPIRVLHRRPLHTRPRTIYSVKARVQRGNPQALIVDIVTQAGTYIKELVHGEFGR 462
Query: 531 TNPSIGSILGCRAEILQLDVTDVKM 555
T PS+ SI+G +I LDV + +
Sbjct: 463 TTPSLSSIIGQAMDIQALDVVGIDL 487
>gi|393909567|gb|EJD75499.1| hypothetical protein, variant [Loa loa]
Length = 380
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 152/266 (57%), Gaps = 24/266 (9%)
Query: 304 PCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE--ERMGEASIEEIIGGNILPMCRGD 361
PC R+P++ GRY K+SRN+SQ+ W ++ S+ E + D
Sbjct: 120 PCYYTVSFERSPLFIAGRYCKFSRNMSQSPWSASTNIRKITGHSVSEKFEAPFIKETGCD 179
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPS------ELLVKEIESKIN-SLENKL 414
+F A+GREDIDVRMLG+GRPF+ ++ N + + S + +K +E IN SL+ K+
Sbjct: 180 VARFVASGREDIDVRMLGNGRPFVLQLINPKRIFSFQRHNLKTTLKRMEDSINKSLDVKV 239
Query: 415 VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR--CYQI 472
V LK + S +L++ G+ E++K Y + +R + D +LKE ++
Sbjct: 240 V--PGLKQITSDQASLIKNGQDERRKLYTGYCYSTRKIDD------FALKELYHKAPIEV 291
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
+QKTP+RVL RR LER ++I ++ K+ +FL+ M TQAGTY+KEFVHGD GRT
Sbjct: 292 IQKTPVRVLKRRPLLERRRMIFFIAALKL--DDYHFLVRMETQAGTYVKEFVHGDFGRTR 349
Query: 533 PSIGSILGC---RAEILQLDVTDVKM 555
PS+ +LG + +IL+LDV V M
Sbjct: 350 PSLADLLGVECGKVDILELDVEGVDM 375
>gi|428184101|gb|EKX52957.1| hypothetical protein GUITHDRAFT_101409 [Guillardia theta CCMP2712]
Length = 513
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 147/533 (27%), Positives = 238/533 (44%), Gaps = 82/533 (15%)
Query: 44 LPTDAVKDL-----LSKEVCLRCIFRLFGMQVPICSSLS---VKSLLCHVLGEQADLHQN 95
LP DA K L ++ + C RC+ + ++ P+ +LS + S + L E+ +
Sbjct: 42 LPDDAKKLLSCMLSMTVKCCARCMLGMVKVRDPLIYALSQEEIASSIADSLDEEGR-DRC 100
Query: 96 ISSVEPNICRS-----CLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDS-- 148
++ CR C+G+LQ + + + E + G+ +DS
Sbjct: 101 MAETSALACRKGDCCVCMGLLQ-------------SDQGEISSQVKEALTTAGYDVDSPC 147
Query: 149 -FSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLL 207
F L +S P +I + Y K S + K+ + ++ +L
Sbjct: 148 TFMLSLSAPSSIFIRQ--YLYYYKALEGSGGALGVSCEQKWIELKEVYRLTYGRRIQQVL 205
Query: 208 DVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENS 267
I RV+ ++ ++ E+ G K ++ K+ T++++ + +
Sbjct: 206 SWT--IDQSSTDSCAGRVKVTMEYRH--EESAGMKEVLLEGKSVKRTMRERRERGQRKGN 261
Query: 268 VVSTTEVIPVDEKSSNGLQDNEPS---ETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLK 324
+V +I V N L P+ +P +++ L R +Y GG Y K
Sbjct: 262 LVEIENIIAVH----NVLHGMTPAALLSKFSWPPAAISKEPELTVKVERESVYIGGCYCK 317
Query: 325 YSRNVSQTRWIIDEERMGEA--SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGR 382
YSR VSQ+ W E GE S++ +I I P+ + + KF +GRED+D GR
Sbjct: 318 YSRKVSQSPW---NEAHGELQDSVQTLILKEIAPLYQPEETKFMGSGREDVD------GR 368
Query: 383 PFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQY 442
P F + +E+ V NL+ VG ++ K+K Y
Sbjct: 369 PVDFNFEKIQEL----------------------VSNLRPVGRDYVDSIKSSGETKRKTY 406
Query: 443 AALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIA 502
ALVW S PL ++ ++E + Q TPIRVLHRRS ER++ + M E++
Sbjct: 407 RALVWTSAPLPPSKLDVLNQMQELA----VFQNTPIRVLHRRSLAERKRTVYRMSAERV- 461
Query: 503 GSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
+ ++FLL + T+AGTYIKEFVHGDLGRT PS+G +L C A+ILQLDV V++
Sbjct: 462 -NDRFFLLDLETEAGTYIKEFVHGDLGRTRPSVGGLLCCEADILQLDVVGVEL 513
>gi|398011670|ref|XP_003859030.1| hypothetical protein, conserved [Leishmania donovani]
gi|322497242|emb|CBZ32317.1| hypothetical protein, conserved [Leishmania donovani]
Length = 720
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 150/309 (48%), Gaps = 59/309 (19%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIE------------------- 347
+ C T IY G Y K RN+SQ+ W ++ +R+G S++
Sbjct: 411 VSCRLHHTNIYLMGSYRKMMRNMSQSPWFLNGQRIGSFSLQEVIANPLLPFFFPDMPALP 470
Query: 348 ---------------EIIGGNILPMCRG----------------------DSYKFHAAGR 370
E+ L + RG + YKFH+AGR
Sbjct: 471 PETAESPALPARDEGELTSAAPLAVERGAHATRWQAVTPSVASSNLVFGYNRYKFHSAGR 530
Query: 371 EDIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
ED+DVRMLG GRPF+ E + RE +E ++ +E+ I S V V+ L+ +
Sbjct: 531 EDVDVRMLGEGRPFVLEFVSPIRERFTEEDLRRLEASICSSHEGSVEVRQLRRTDADITV 590
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
+ K KQY ++W SR + D +R I QKTP+RVLHRRS R
Sbjct: 591 RLARHSESKVKQYRCVIWSSRAIDDVATDPHVRTIHAMRDLPIQQKTPLRVLHRRSLHRR 650
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
++I+ M++ + ++ +FLL + TQAGTY+KEFVHGD+GRT P +G +L R +I+QLD
Sbjct: 651 PRLIHSMRLTPL--NTHWFLLDLETQAGTYVKEFVHGDMGRTTPHLGMLLNARTDIIQLD 708
Query: 550 VTDVKMNCF 558
V + ++ F
Sbjct: 709 VVGIAIHDF 717
>gi|170583125|ref|XP_001896442.1| hypothetical protein Bm1_24910 [Brugia malayi]
gi|158596369|gb|EDP34726.1| hypothetical protein Bm1_24910 [Brugia malayi]
Length = 465
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 150/255 (58%), Gaps = 20/255 (7%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWI--IDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
R+P++ GRY K+SRN+SQ+ W D +++ S+ E +G + D +F A+GR
Sbjct: 214 RSPLFIAGRYCKFSRNMSQSPWSASTDMKKIIGHSVSEKVGAPFVTETGCDVARFIASGR 273
Query: 371 EDIDVRMLGSGRPFLFEIQNAREV-PSE-----LLVKEIESKINSLENKLVRV-KNLKIV 423
EDIDVRMLG+GRPF+ E+ N + + P + +K +E IN +N V+V LK +
Sbjct: 274 EDIDVRMLGNGRPFVLELINPKRIFPFQRNNLKTTLKRLEDSIN--KNLDVKVLPGLKQI 331
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
S +L++ G+ E++K Y +R L D + K + +++QKTP+RVL R
Sbjct: 332 TSDQASLIKNGQDERRKLYTGYCCSTRKLDDLALXKLHH-KAPI---EVIQKTPVRVLKR 387
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC-- 541
R LER ++I ++ K+ +FL+ M TQAGTY+KEFVHGD GRT PS+ +LG
Sbjct: 388 RPLLERRRMIFFIAALKL--DDYHFLIRMETQAGTYVKEFVHGDFGRTRPSLADLLGVEC 445
Query: 542 -RAEILQLDVTDVKM 555
+IL+LDV V M
Sbjct: 446 GEVDILELDVEGVDM 460
>gi|307198829|gb|EFN79605.1| Putative tRNA pseudouridine synthase Pus10 [Harpegnathos saltator]
Length = 304
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 150/263 (57%), Gaps = 19/263 (7%)
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
LC + I+ GGRY K SR +SQT W ++ E+ E S+++++ +I + +S KF ++
Sbjct: 44 VLCSHSSIFIGGRYNKLSRELSQTPWFVNGEKKVETSVQDLLCNSIAETVKAESIKFLSS 103
Query: 369 GREDIDVRMLGSGRPFLFEIQNAR--EVPSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
GRED+DVR + +GRPF E+ N R + ELL+ + + IN ++ LK++
Sbjct: 104 GREDVDVRNIYNGRPFAVELLNPRMTNITDELLM-YLANNINQSTKQVQITSGLKVLSRF 162
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSP 486
++EGE K K Y AL + R D + + SL + ++ +I+QKTPIRVLHRR
Sbjct: 163 DLQKLKEGEHVKTKFYRALC-VCRSASD-NLPQVESLNK-LKNIKIVQKTPIRVLHRRPL 219
Query: 487 LEREKIINWM-----------KIEKIAGSS--QYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
R + + M K+ + A S ++F+L + TQAGTY+KEFVHGD GRT P
Sbjct: 220 TPRTRFVYKMRARWAEPQELTKLLRTASESADKFFVLDVKTQAGTYVKEFVHGDYGRTKP 279
Query: 534 SIGSILGCRAEILQLDVTDVKMN 556
S+ L +I+ LDVT + +N
Sbjct: 280 SLCDFLNAEVDIVALDVTGINLN 302
>gi|307188137|gb|EFN72969.1| Putative tRNA pseudouridine synthase Pus10 [Camponotus floridanus]
Length = 501
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 152/525 (28%), Positives = 240/525 (45%), Gaps = 63/525 (12%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGIL 111
L S+ CLRC R G + C K V D ISS E C CLG+L
Sbjct: 16 LKSQGCCLRCCLRFIGYRTSECYC---KPFEFAVRMNCFDTKDYISSKETP-CIVCLGVL 71
Query: 112 QFTYCGDK--ERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLY 169
Q DK E V++ + E V K+G+ +F+ +++P ++ E+ L +
Sbjct: 72 Q-----DKTQEEVIK---------KVIEEVNKKGYDCTTFTCALTVPVSVKLREHILYAH 117
Query: 170 VKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCG---ISTFHIRLTYSRVE 226
+ ++ D + + KD K + LE + KC S F I + +
Sbjct: 118 ISKELDIHKSVVDVLKTRLQNIKDIWKLFMIPKLEQAMK-KCADLLTSPFLIEVFLTYTN 176
Query: 227 ASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQ 286
+ + + K + ++ K +T K+ +E ++ TT
Sbjct: 177 DEVIFKELMNKHKEGNNKQNKRKYNDNTFSRKN----IETLLLETT-------------- 218
Query: 287 DNEPSETHEFPLKKVNEPCRLE-CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
D + + P + +E LC I+ GG Y K+SR +SQT W I+ E+ + S
Sbjct: 219 DEQLLQHFTIPQLVIKMFVSVENILCSHNSIFIGGCYNKFSRKLSQTPWFINGEKKVDTS 278
Query: 346 IEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR--EVPSELLVKEI 403
+++++ I + +S KF ++GRED+DVR + SGRPF E+ N R + +ELL + +
Sbjct: 279 VQDLLCNLIAETVKAESIKFLSSGREDVDVRNIYSGRPFAVELLNPRMTNITNELL-RHL 337
Query: 404 ESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
IN ++ LK++ ++EGE K K Y AL +T++ L
Sbjct: 338 VVNINQSTKQVQITSGLKVLSKLDLKKLKEGENVKTKFYRALCVCKSANSLSQLETLNEL 397
Query: 464 KETVRCYQILQKTPIRVLHRR--SPLER---EKIINWMKIEKIA--------GSSQYFLL 510
K +I+QKTPIRVLHRR SP R E + W K ++ + ++F+L
Sbjct: 398 KNI----KIIQKTPIRVLHRRPLSPRTRTIYEMRVRWAKPHELKKLLQVSAESTDKFFIL 453
Query: 511 HMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
+ TQAGTY+KEFVHGD GRT PS+ L +I+ LDVT + +
Sbjct: 454 DVKTQAGTYVKEFVHGDFGRTKPSLCDFLNTEVDIVALDVTGINL 498
>gi|384252562|gb|EIE26038.1| hypothetical protein COCSUDRAFT_12682, partial [Coccomyxa
subellipsoidea C-169]
Length = 219
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNARE-VPSEL 398
R G SI+E + +LP R D KF +AGRED++VRMLGSGRPF+ EI NAR +P+
Sbjct: 3 RKGRTSIQEEVERVVLPHLRCDGSKFISAGREDMNVRMLGSGRPFVLEIANARAAMPALE 62
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+++ +N V V+ L+ V ++ GE EKQK Y A W+ P+ +
Sbjct: 63 CFEQMADSLNQ-SGVGVEVRKLQPVDKDSLRAVQAGEQEKQKSYLATCWLPCPVTPAILE 121
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
I+S + V + Q+TP RV HRR+ L REK I M E + G +L + TQAGT
Sbjct: 122 NINSSENLV----LQQRTPTRVEHRRAMLVREKTIYSMSAEPVEGDPHSLVLRLRTQAGT 177
Query: 519 YIKEFVHGDLGRTNPSIGSILGCR--AEILQLDVTDVKM 555
YIKEFVH D GRT P++ S++GC A+IL LDV +V M
Sbjct: 178 YIKEFVHSDDGRTTPNLASLVGCEESAKILDLDVLEVHM 216
>gi|308480609|ref|XP_003102511.1| hypothetical protein CRE_04020 [Caenorhabditis remanei]
gi|308261243|gb|EFP05196.1| hypothetical protein CRE_04020 [Caenorhabditis remanei]
Length = 484
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA--SIEEIIGGNILPMCRGDSYKFHAAGR 370
R P+Y GRY KYSR + Q+ W D++ E S+ E + + KF +GR
Sbjct: 223 RDPVYVAGRYCKYSRCLPQSPWSEDKDAPREPGNSVSEKVCDILKKHFGASDSKFVTSGR 282
Query: 371 EDIDVRMLGSGRPFLFEIQNAR-EVPSELL-----VKEIESKINSLENKLVRVKNLKIVG 424
EDIDVRMLG+GRPF+ E++N R P L +K IE INS K +++ +L V
Sbjct: 283 EDIDVRMLGTGRPFVVELRNCRITAPVRGLNYLETLKSIEESINS--QKDIKINSLTRVA 340
Query: 425 SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+ GE +K+KQY A + P+ DE F T S I+QKTP+RV+ RR
Sbjct: 341 RDVAEKLSVGEEDKRKQYCAYCYSILPISDEQFSTARSKIPLT----IVQKTPVRVMKRR 396
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC--- 541
+ L+RE+ I M K+ +F + + TQAGTYIKEFVHGD GRT PS+ +LG
Sbjct: 397 ALLDRERTIFSMDFLKL--DDHHFEVRLETQAGTYIKEFVHGDFGRTRPSLAELLGVEHG 454
Query: 542 RAEILQLDVTDVKM 555
+IL+LDV V +
Sbjct: 455 EVDILELDVEKVDL 468
>gi|402585916|gb|EJW79855.1| hypothetical protein WUBG_09236 [Wuchereria bancrofti]
Length = 267
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 149/263 (56%), Gaps = 20/263 (7%)
Query: 305 CRLECLCFRTPIYFGGRYLKYSRNVSQTRWI--IDEERMGEASIEEIIGGNILPMCRGDS 362
CR R+P++ GRY K+SRN+SQ+ W D +++ S+ E IG + D
Sbjct: 8 CRYTISFERSPLFIAGRYCKFSRNMSQSPWSASTDMKKIIGHSVSEKIGAPFVKETGCDV 67
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPS------ELLVKEIESKINSLENKLVR 416
+F A+GREDIDVRMLG+GRPF+ E+ N + + S + ++ +E IN +N V+
Sbjct: 68 ARFIASGREDIDVRMLGNGRPFVLELINPKRIFSFQRHNLKTTLRRLEDSIN--KNLDVK 125
Query: 417 V-KNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQK 475
V LK + S +L++ G+ E++K Y +R + D + L +++QK
Sbjct: 126 VLSGLKQITSDQASLIKNGQDERRKLYTGYCCSTRKV---DHLALEKLHHKAPI-EVIQK 181
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVL RR LER ++I I + +FL+ M TQAGTY+KEFVHGD GRT PS+
Sbjct: 182 TPVRVLKRRPLLERRRMI--FSIAALKLDDYHFLIRMETQAGTYVKEFVHGDFGRTRPSL 239
Query: 536 GSILGC---RAEILQLDVTDVKM 555
+LG +IL+LDV V M
Sbjct: 240 ADLLGVECGEVDILELDVEGVDM 262
>gi|341892269|gb|EGT48204.1| hypothetical protein CAEBREN_25939 [Caenorhabditis brenneri]
Length = 468
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 146/271 (53%), Gaps = 17/271 (6%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWI--IDEERMGEASIEEIIGG 352
+F K C R P+Y GRY KYSR + Q+ W DE R S+ E +
Sbjct: 189 KFIFKSPTRKCTFRLNFERDPVYIAGRYCKYSRCLPQSPWSEEKDEPREPGNSVSEKVCD 248
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+ +F +GREDIDVRMLG+GRPF+ E++N R S +K E+ + SLE+
Sbjct: 249 ILKKNFGASDSRFVTSGREDIDVRMLGTGRPFVVELRNCRTTASVRGLKYQET-LKSLED 307
Query: 413 KLVRVKNLKI-----VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETV 467
+ R K++K+ V + G+ +K+KQY A + P+ +E F S
Sbjct: 308 TINRQKDIKVNFLTRVSRDVAEKLSVGQEDKRKQYCAYCYSILPISEEQFAAARSKIP-- 365
Query: 468 RCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGD 527
+I+QKTP+RVL RRS L+RE+ I + K+ +F + + TQAGTYIKEFVHGD
Sbjct: 366 --LKIVQKTPVRVLKRRSLLDRERTIYTLDFLKL--DDHHFEVRLETQAGTYIKEFVHGD 421
Query: 528 LGRTNPSIGSILGC---RAEILQLDVTDVKM 555
GRT PS+ +LG +IL+LDV V +
Sbjct: 422 FGRTRPSLAELLGVEHGEVDILELDVEQVDL 452
>gi|194853242|ref|XP_001968130.1| GG24674 [Drosophila erecta]
gi|190659997|gb|EDV57189.1| GG24674 [Drosophila erecta]
Length = 501
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 151/266 (56%), Gaps = 10/266 (3%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGN 353
+ P E RL + + P+ GRY K SR +S T WI++ +R+ E SIEEII +
Sbjct: 229 QIPCPNAEESIRLTSIELQGPLVCVAGRYRKLSRELSHTPWILNGKRLMEDSIEEIIIRH 288
Query: 354 ILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSL 410
+ P + F ++GRED+DVR LG GRPF+ EI NA R S+ +E +++
Sbjct: 289 VGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAIRSCLSKDKAFAMERAVDA- 347
Query: 411 ENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY 470
+ +V + NL++V + T ++ GE +K+K Y AL + P+ + + + + +
Sbjct: 348 -SGMVSIHNLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQL----QISASF 402
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGR 530
I QKTPIRVLHRR R + I + + G+ + ++ + TQAGTYIKE VHG+ GR
Sbjct: 403 DIQQKTPIRVLHRRPLHTRPRTIYSVNAKVQRGNPKALIIDIVTQAGTYIKELVHGEFGR 462
Query: 531 TNPSIGSILGCRAEILQLDVTDVKMN 556
T+PS+ SI+G +I LDV + ++
Sbjct: 463 TSPSLSSIIGKPIDIQALDVVGIDLD 488
>gi|118792840|ref|XP_320532.3| AGAP012003-PA [Anopheles gambiae str. PEST]
gi|116117092|gb|EAA00441.4| AGAP012003-PA [Anopheles gambiae str. PEST]
Length = 505
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 150/252 (59%), Gaps = 12/252 (4%)
Query: 310 LCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM--CRGDSYKFH 366
L F P I+ GRY K+SR +SQT W+ID +R S++E IG ++ P + F
Sbjct: 254 LSFTGPTIFLAGRYNKFSRELSQTPWMIDGKRKMAGSVQETIGASVAPHFGVSDEQLIFS 313
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAR--EVPSELLVKEIESKINSLENKLVRVKNLKIVG 424
++GRED+DVR LG GRPF+ EI +A+ ++P ++ ++ +E ++ + ++ V ++++++V
Sbjct: 314 SSGREDVDVRCLGEGRPFVLEIVDAKTDQLPEDVAIR-MEQEVGT--SQTVAIRDIQLVK 370
Query: 425 SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+ +R GE +K+K Y AL + P+ +E + + + V + Q TP+RVLHRR
Sbjct: 371 REDLVHIRHGEEDKRKFYRALCVTAEPVTEEMVRKLRIDEPFV----MQQVTPLRVLHRR 426
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
+ L R + + +K ++ ++ + +QAGTYIKE VH D GRT PS SI+G +
Sbjct: 427 TLLARPRTVYSVKAFACRENAHAMVVDIVSQAGTYIKELVHSDFGRTGPSFRSIIGAEID 486
Query: 545 ILQLDVTDVKMN 556
I LDV + ++
Sbjct: 487 IHALDVMAIDLD 498
>gi|19920442|ref|NP_608500.1| CG3709 [Drosophila melanogaster]
gi|74870264|sp|Q9VPK7.2|PUS10_DROME RecName: Full=Putative tRNA pseudouridine synthase Pus10; AltName:
Full=Coiled-coil domain-containing protein 139 homolog;
AltName: Full=tRNA pseudouridine 55 synthase;
Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate
synthase; AltName: Full=tRNA-uridine isomerase
gi|10727419|gb|AAF51539.2| CG3709 [Drosophila melanogaster]
gi|17862228|gb|AAL39591.1| LD16038p [Drosophila melanogaster]
gi|220943126|gb|ACL84106.1| CG3709-PA [synthetic construct]
Length = 500
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 20/277 (7%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE- 402
IEEII ++ P + F ++GRED+DVR LG GRPF+ EI NA+ L K+
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAKR---SCLTKDE 337
Query: 403 ---IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+E +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 338 AFAMERAVDA--SGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQ 395
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ + + I QKTPIRVLHRR R + I + + G+ + ++ + TQAGTY
Sbjct: 396 L----QISASFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGTY 451
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKE VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 452 IKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>gi|195575461|ref|XP_002077596.1| GD22981 [Drosophila simulans]
gi|194189605|gb|EDX03181.1| GD22981 [Drosophila simulans]
Length = 500
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 155/277 (55%), Gaps = 20/277 (7%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE- 402
IEEII ++ P + F ++GRED+DVR LG GRPF+ EI NAR L K+
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNARRT---CLTKDE 337
Query: 403 ---IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+E +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 338 AFAMERAVDA--SGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALHEPVSVKILEQ 395
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ + + I QKTPIRVLHRR R + I +K + + ++ + TQAGTY
Sbjct: 396 L----QISASFNIQQKTPIRVLHRRPLHTRPRTIYSVKARVHRENPKALIIDIVTQAGTY 451
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKE VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 452 IKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>gi|71665670|ref|XP_819802.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70885120|gb|EAN97951.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 627
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 15/200 (7%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI---QNAREVPSELLVKEIESKINSLENKLVRVKN 419
YKFH+AGRED+DVRMLGSGRPF+ EI R P +L V E +N E V + +
Sbjct: 419 YKFHSAGREDVDVRMLGSGRPFVLEIISPSRQRVTPHDLAV--FEEAVNKSEKGSVEISD 476
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQK 475
L++ + + K K+Y +VW SR P D+ FQ ++++K+ I Q+
Sbjct: 477 LRVTDADITVRLARHSQSKVKKYRCVVWCSRAIVDPEHDDYFQAVNAVKDL----DIEQR 532
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVLHRRS R ++I+ +++ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +
Sbjct: 533 TPVRVLHRRSMQVRPRMIHSIRLMPL--NAHWFLMDLETQAGTYVKEFVHGDMGRTKPHL 590
Query: 536 GSILGCRAEILQLDVTDVKM 555
G++L R +I+QLDV ++M
Sbjct: 591 GALLNGRTDIIQLDVLGMEM 610
>gi|407859846|gb|EKG07195.1| hypothetical protein TCSYLVIO_001678 [Trypanosoma cruzi]
Length = 613
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 15/200 (7%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI---QNAREVPSELLVKEIESKINSLENKLVRVKN 419
YKFH+AGRED+DVRMLGSGRPF+ EI R P +L V E +N E V + +
Sbjct: 419 YKFHSAGREDVDVRMLGSGRPFVLEIISPSRQRVTPHDLAV--FEEAVNKSEKGSVEISD 476
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQK 475
L++ + + K K+Y +VW SR P D+ FQ ++++K+ I Q+
Sbjct: 477 LRVTDADITVRLARHSQSKVKKYRCVVWCSRAIVDPEHDDYFQAVNAVKDL----DIEQR 532
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVLHRRS R ++I+ +++ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +
Sbjct: 533 TPVRVLHRRSMQVRPRMIHSIRLMPL--NAHWFLMDLETQAGTYVKEFVHGDMGRTKPHL 590
Query: 536 GSILGCRAEILQLDVTDVKM 555
G++L R +I+QLDV ++M
Sbjct: 591 GALLNGRTDIIQLDVLGMEM 610
>gi|71656102|ref|XP_816603.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70881743|gb|EAN94752.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 613
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 15/200 (7%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI---QNAREVPSELLVKEIESKINSLENKLVRVKN 419
YKFH+AGRED+DVRMLGSGRPF+ EI R P +L V E +N E V + +
Sbjct: 419 YKFHSAGREDVDVRMLGSGRPFVLEIISPSRQRVTPQDLAV--FEEAVNKSEKGSVEISD 476
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQK 475
L++ + + K K+Y +VW SR P D+ FQ ++++K+ I Q+
Sbjct: 477 LRVTDADITVRLARHSQSKVKKYRCVVWCSRAIVDPEHDDYFQAVNAVKDL----DIEQR 532
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVLHRRS R ++I+ +++ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +
Sbjct: 533 TPVRVLHRRSMQVRPRMIHSIRLMPL--NAHWFLMDLETQAGTYVKEFVHGDMGRTKPHL 590
Query: 536 GSILGCRAEILQLDVTDVKM 555
G++L R +I+QLDV ++M
Sbjct: 591 GALLNGRTDIIQLDVLGMEM 610
>gi|407425004|gb|EKF39252.1| hypothetical protein MOQ_000524 [Trypanosoma cruzi marinkellei]
Length = 613
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 125/200 (62%), Gaps = 15/200 (7%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI---QNAREVPSELLVKEIESKINSLENKLVRVKN 419
YKFH+AGRED+DVRMLGSGRPF+ EI R P +L V E +N E V + +
Sbjct: 419 YKFHSAGREDVDVRMLGSGRPFVLEIISPSRQRVTPQDLAV--FEEAVNKSEKGSVEISD 476
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQK 475
L++ + + K K+Y +VW SR P D+ FQ ++++K+ I Q+
Sbjct: 477 LRVTDADITVRLARHSQSKVKKYRCVVWCSRAIVDPDHDDYFQAVNAVKDL----DIEQR 532
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVLHRRS R ++I+ +++ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +
Sbjct: 533 TPLRVLHRRSMQVRPRMIHSIRLMPL--NAHWFLMDLETQAGTYVKEFVHGDMGRTKPHL 590
Query: 536 GSILGCRAEILQLDVTDVKM 555
G++L R +I+QLDV + M
Sbjct: 591 GALLNGRTDIIQLDVLGMAM 610
>gi|71755653|ref|XP_828741.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834127|gb|EAN79629.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 604
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 123/193 (63%), Gaps = 11/193 (5%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
YKFH+AGRED+DVRMLGSGRPF+ E I +RE S + +E+ +N+ E V + L+
Sbjct: 410 YKFHSAGREDVDVRMLGSGRPFVLEVISPSRERASPEDLASLEAVVNTSEEGSVEISELR 469
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQKTP 477
I + M K K+Y +VW SR P +D FQ +++ + V + Q+TP
Sbjct: 470 ITDAGILLRMAHHSQSKVKRYRCVVWCSRSIPEPEKDRHFQATNAVCDLV----VEQRTP 525
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
+RVLHRRS R ++I+ +I+ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +G
Sbjct: 526 VRVLHRRSLQSRNRVIH--RIQLVPLNAHWFLMDLETQAGTYVKEFVHGDMGRTVPHLGQ 583
Query: 538 ILGCRAEILQLDV 550
+L R +I+QLDV
Sbjct: 584 LLNGRTDIIQLDV 596
>gi|195998321|ref|XP_002109029.1| hypothetical protein TRIADDRAFT_52642 [Trichoplax adhaerens]
gi|190589805|gb|EDV29827.1| hypothetical protein TRIADDRAFT_52642 [Trichoplax adhaerens]
Length = 471
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 133/236 (56%), Gaps = 46/236 (19%)
Query: 321 RYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGS 380
RY KY R +SQT WIID R G+ S++E+I I+ D KF ++GREDIDVRMLG
Sbjct: 267 RYNKYDRTISQTPWIIDGIRKGDTSVQELICDPIIAKVNADGCKFSSSGREDIDVRMLGK 326
Query: 381 GRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQK 440
GRPF+ EI N R S + K ++++++N+ + +Q W
Sbjct: 327 GRPFIAEILNPR---SPFMTKM----------EVLQLQNVGCIKTQRW------------ 361
Query: 441 QYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEK 500
R QDE+ Q ++ I QKTP+RVLHRR+ R ++I MK E
Sbjct: 362 ---------RRKQDENLQELT----------IEQKTPLRVLHRRTLAVRCRMIWSMKTEY 402
Query: 501 IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ + +F L++ TQAGTYIKEFVHGDLGRT P++ ++L +IL+LDV V ++
Sbjct: 403 L--DAHHFKLYLTTQAGTYIKEFVHGDLGRTKPNLCTLLNMGVDILELDVESVDLD 456
>gi|195350015|ref|XP_002041537.1| GM16693 [Drosophila sechellia]
gi|194123310|gb|EDW45353.1| GM16693 [Drosophila sechellia]
Length = 500
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 154/277 (55%), Gaps = 20/277 (7%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE- 402
IEEII ++ P + F ++GRED+DVR LG GRPF+ EI NAR L K+
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNARRT---CLTKDE 337
Query: 403 ---IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+E +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 338 AFAMERAVDA--SGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALHEPVSVKILEQ 395
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ + + I QKTPIRVLHRR R + I + + + ++ + TQAGTY
Sbjct: 396 L----QISASFNIQQKTPIRVLHRRPLHTRPRTIYSVNARVHRENPKALIIDIVTQAGTY 451
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKE VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 452 IKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>gi|312377644|gb|EFR24427.1| hypothetical protein AND_10993 [Anopheles darlingi]
Length = 515
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 143/245 (58%), Gaps = 11/245 (4%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM--CRGDSYKFHAAGREDI 373
I+ GRY K+SR +SQT WII+ +R+ E S++E + I P F ++GRED+
Sbjct: 271 IFVAGRYNKWSRTLSQTPWIIEGKRLMEGSVQETLEAAIAPHFGVPEGQLIFSSSGREDV 330
Query: 374 DVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
DVR LG GRPF+ EI NA ++P + V +E + + + V +++L++V +
Sbjct: 331 DVRCLGEGRPFVLEIPNALTDQLPEQDAVA-MEQAVET--SGTVSIRDLQLVKRPDLVHI 387
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
R E+EK+K Y AL + P+ +E + + + ET+ Q+ TP+RVLHRR L+R +
Sbjct: 388 RGNESEKRKFYRALCVTTEPVNEEMIRRLR-VNETIELQQV---TPLRVLHRRPLLKRSR 443
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
+ ++ + ++ + TQAGTYIKEFVHGD GRT PSI ++G +I LDV
Sbjct: 444 HVYRLQAWACRDNPNAMVIELETQAGTYIKEFVHGDFGRTKPSIRDMIGVEVDIHALDVM 503
Query: 552 DVKMN 556
+ ++
Sbjct: 504 AIDLD 508
>gi|261334646|emb|CBH17640.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 604
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 122/193 (63%), Gaps = 11/193 (5%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
YKFH+AGRED+DVRMLGSGRPF+ E I +RE S + +E+ +N+ E V + L+
Sbjct: 410 YKFHSAGREDVDVRMLGSGRPFVLEVISPSRERASPEDLASLEAVVNTSEEGSVEISELR 469
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISR----PLQDEDFQTISSLKETVRCYQILQKTP 477
I + M K K+Y +VW SR P +D FQ +++ + V + Q+TP
Sbjct: 470 ITDAGILLRMAHHSQSKVKRYRCVVWCSRSIPEPEKDRHFQATNAVCDLV----VEQRTP 525
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
+RVLHRRS R ++I+ I+ + ++ +FL+ + TQAGTY+KEFVHGD+GRT P +G
Sbjct: 526 VRVLHRRSLQSRNRVIH--HIQLVPLNAHWFLMDLETQAGTYVKEFVHGDMGRTVPHLGQ 583
Query: 538 ILGCRAEILQLDV 550
+L R +I+QLDV
Sbjct: 584 LLNGRTDIIQLDV 596
>gi|195035267|ref|XP_001989099.1| GH10231 [Drosophila grimshawi]
gi|193905099|gb|EDW03966.1| GH10231 [Drosophila grimshawi]
Length = 498
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 220/466 (47%), Gaps = 58/466 (12%)
Query: 102 NICRSCLGILQFTYCGDKER-VVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTIL 160
+IC CLG+ + D +R V++ DFA + D L +SMP T+
Sbjct: 67 SICSICLGL----FSEDLQRQVIQGILDSDFA----------KYDSDGIVLAISMPMTLQ 112
Query: 161 ENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGIS------ 214
+ + ++RK F S+++ ++ +K A+ L ++ K G
Sbjct: 113 LRQLSMWFALQRK------FGRSSVADHNAPDVPIKEAVKLILHPIVCAKLGREYDANGL 166
Query: 215 TFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEV 274
+I L +S E + V K+ R AKN + V +
Sbjct: 167 MINIELRHSSEE------DVVAKLSELNRAAFPAKN---------------HRRVEISRG 205
Query: 275 IPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTR 333
+ + + ++ + + P V +P +L+ + PI GRY K SR +S T
Sbjct: 206 LLEKQYQPSRIKGDLFEQYLPIPPPAVMDPLQLQSIELLGPIVCVAGRYRKLSRELSHTP 265
Query: 334 WIIDEERMGEASIEEIIGGNILPMCRGDSYK--FHAAGREDIDVRMLGSGRPFLFEIQNA 391
W++ +R+ E SIEEII ++ K F ++GRED+DVR LG GRPF+ EI NA
Sbjct: 266 WVLHGQRIMEDSIEEIIVRHVAAYFTETPEKITFMSSGREDVDVRCLGKGRPFVLEIPNA 325
Query: 392 REVPSELLVKEIESKINSLE-NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISR 450
R S + ++ + +++ V + NL++V + T ++ GE +K+K Y AL +
Sbjct: 326 RR--SSMTRQQALAMEQAVDCTGKVSIHNLQVVPREELTHIKTGEEQKRKYYRALCVLQE 383
Query: 451 PLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLL 510
P+ + Q + + + I QKTPIRVLHRR R + I ++ + + ++
Sbjct: 384 PVTLDILQKL----QISDSFDIQQKTPIRVLHRRPLHTRPRTIFSVEARVQRENRRLLII 439
Query: 511 HMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ +QAGTYIKE VHG+ GRT PSI SI+G +I+ LDV + ++
Sbjct: 440 DVVSQAGTYIKELVHGEFGRTTPSISSIIGKPIDIVALDVVGIDLD 485
>gi|119719271|ref|YP_919766.1| pseudouridylate synthase [Thermofilum pendens Hrk 5]
gi|332319823|sp|A1RX33.1|PUS10_THEPD RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|119524391|gb|ABL77763.1| pseudouridylate synthase [Thermofilum pendens Hrk 5]
Length = 444
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 8/241 (3%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMG-EASIEEIIGGNILPMCRGDSYKFHAAGRED 372
P++ GRY KY+R + Q W +ER+ SIEE+I L + + KFHAAGRED
Sbjct: 206 APVFVYGRYRKYARGLPQNPWPQPDERIKFNTSIEELIVKPALELFEAEKAKFHAAGRED 265
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
IDVR LG+GRPF+ EI+ R+ +L V + KINS L+ V +L + ++
Sbjct: 266 IDVRTLGTGRPFVLEIKKPRKRNIDLKV--LAEKINSGAGGLIEVLDLAYTDRKTIKKLK 323
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ +K Y A V +P+ DE IS + I Q+TP RVLHRR R+KI
Sbjct: 324 SLASIAKKAYVARVKFEKPVDDEKLAEISKVFSNA---VINQRTPTRVLHRRVDKLRKKI 380
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ ++ KI+ F L TQ G Y+KEF+HGD GRT PSI LG ++LDV
Sbjct: 381 VYRLEARKISQDEVEFYLE--TQGGFYVKEFIHGDNGRTTPSIAEFLGNNVLSIELDVVS 438
Query: 553 V 553
+
Sbjct: 439 I 439
>gi|412985669|emb|CCO19115.1| predicted protein [Bathycoccus prasinos]
Length = 634
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 148/257 (57%), Gaps = 15/257 (5%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA--SIEEIIGGNILPMCRGDSYKFHAAGRE 371
+P+Y GRY K++R+V Q+ W + A S+++ + I+ D KF+++GRE
Sbjct: 379 SPVYVAGRYAKFARDVPQSPWSNCPVKWARATESVQDALEDAIVKSAHADGAKFNSSGRE 438
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSEL---LVKEIESKIN--SLENKLVRVKNLKIVGSQ 426
D+DVRMLG GRPF+ E+ N + SEL LV+ E+ +N S V+ NL++V +
Sbjct: 439 DLDVRMLGDGRPFVLEVHNPKASVSELRENLVR-AETLMNQSSFLKTDVKAFNLRVVPKE 497
Query: 427 GW--TLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+ +R EK+K Y+ + P+ + TI + ++ ++ Q+TPIRV HRR
Sbjct: 498 TYKNVGLRLDSNEKEKSYSCVCICDPPVPMD--STICDVVSAMKDVELKQQTPIRVSHRR 555
Query: 485 SPLEREKIINWMKIEKIAGS-SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL--GC 541
S L R + + +K+ + G+ + + + +AGTYIKEF HGD GRTNPS+G +L G
Sbjct: 556 SDLVRPRTLREIKVTVVPGTRGRCVYVDLRAEAGTYIKEFCHGDKGRTNPSLGDLLGNGT 615
Query: 542 RAEILQLDVTDVKMNCF 558
+ +I+QLDVT V F
Sbjct: 616 KCDIIQLDVTKVDAVGF 632
>gi|157865628|ref|XP_001681521.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68124818|emb|CAJ02623.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 720
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 13/235 (5%)
Query: 323 LKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGR 382
L R TRW + +++ + G N YKFH+AGRED+DVRMLG GR
Sbjct: 493 LAVERGAHATRWQAVTPSVASSTL--VFGYN--------RYKFHSAGREDVDVRMLGEGR 542
Query: 383 PFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQ 441
PF+ E + RE +E ++ +E+ I S V V+ L+ + + K K+
Sbjct: 543 PFVLEFVSPIRERFTEDDLRRLEASICSSYEGSVEVRQLRRTDADITVRLARHSESKVKR 602
Query: 442 YAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKI 501
Y ++W SR + D +R I QKTP+RVLHRRS R ++I+ M++ +
Sbjct: 603 YRCVIWSSRAIDDVATDPRVRTIHAMRDLPIQQKTPLRVLHRRSLHRRPRLIHSMRLTPL 662
Query: 502 AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
++ +FLL + TQAGTY+KEFVHGD+GRT P +G +L R +I+QLDV + M+
Sbjct: 663 --NTHWFLLDLETQAGTYVKEFVHGDMGRTTPHLGMLLNARTDIIQLDVVGMAMH 715
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM 357
+ C T IY G Y K RN+SQ+ W ++ +R+G S++E+I +LP
Sbjct: 411 VSCRLHHTNIYLMGSYRKMMRNMSQSPWFLNGQRIGSFSLQEVIANPVLPF 461
>gi|268532958|ref|XP_002631607.1| Hypothetical protein CBG20788 [Caenorhabditis briggsae]
gi|268532964|ref|XP_002631610.1| Hypothetical protein CBG20791 [Caenorhabditis briggsae]
Length = 468
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA--SIEEIIGGNILPMCRGDSYKFHAAGR 370
R P++ GRY KYSR + Q+ W D++ E S+ E + + +F +GR
Sbjct: 207 RDPVFVAGRYCKYSRCLPQSPWSEDKDAPREPGNSVSEKVCDVLKKQFGASDSRFVTSGR 266
Query: 371 EDIDVRMLGSGRPFLFEIQNAR-EVPSELL-----VKEIESKINSLENKLVRVKNLKIVG 424
EDIDVRMLG+GRPF+ E++N R +P L +K +E IN+ K +++ +L V
Sbjct: 267 EDIDVRMLGNGRPFVVELRNCRITLPVRGLNYLETLKSVEETINA--QKDIKINSLTRVP 324
Query: 425 SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+ + GE +K+KQY A + P+ DE F S I+QKTP+RV+ RR
Sbjct: 325 RELAEKLCVGEEDKRKQYCAYCYSILPISDEQFAAARSKIPLT----IVQKTPVRVMKRR 380
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC--- 541
+ L+RE+ I M K+ +F + + TQAGTYIKEFVHGD GRT PS+ +L
Sbjct: 381 ALLDRERTIFSMDFLKL--DDHHFEVRLETQAGTYIKEFVHGDFGRTRPSLAELLHVENG 438
Query: 542 RAEILQLDVTDVKM 555
+IL+LDV V +
Sbjct: 439 EVDILELDVEKVDL 452
>gi|47210549|emb|CAF90688.1| unnamed protein product [Tetraodon nigroviridis]
Length = 585
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 8/203 (3%)
Query: 297 PLKKVNEPCRLECL-CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
P V+ C L+ + C T ++ GRY K+SRN+ QT W+I ER E+S+EE+I IL
Sbjct: 350 PPAPVSSRCVLQDVQCLHTSLFIAGRYNKFSRNLPQTPWLIGGERRMESSVEELIAAPIL 409
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEI-ESKINSLENK 413
R D + F ++GRED+DVR LG+GRPF E+ N R S ++++ E INS +K
Sbjct: 410 ATFRTDGFNFSSSGREDVDVRTLGTGRPFAVELLNPHRSRVSRAEMRQLQEQTINSSSDK 469
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
+RV++L++V + + M+EGE EK K Y ALVW + LQ ED I +K+ +
Sbjct: 470 -IRVRDLQMVTREATSRMKEGEEEKTKSYTALVWTHKALQREDLSFIDDIKDLT----LN 524
Query: 474 QKTPIRVLHRRSPLEREKIINWM 496
QKTP+RVLHRR+ R+++++ M
Sbjct: 525 QKTPLRVLHRRALAVRQRLVHSM 547
>gi|401417065|ref|XP_003873026.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489253|emb|CBZ24509.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 721
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 13/231 (5%)
Query: 327 RNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLF 386
R TRW + +++ + G N YKFH+AGRED+DVRMLG GRPF+
Sbjct: 498 RGAHTTRWQAVAPSVASSTL--VFGYN--------RYKFHSAGREDVDVRMLGEGRPFVL 547
Query: 387 EIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAAL 445
E+ + RE +E ++ +E+ I S V V+ L+ + + K K+Y +
Sbjct: 548 ELVSPIRERFTEDDLRRLEACICSSYEGSVEVRQLRRTDADITVRLARHSESKVKRYRCV 607
Query: 446 VWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSS 505
+W +R + D +R I QKTP+RVLHRRS R ++I+ M++ + ++
Sbjct: 608 IWSTRAIDDVATDPHVRTIHAMRDLPIQQKTPLRVLHRRSLHRRPRLIHSMRLTPL--NT 665
Query: 506 QYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+FLL + TQAGTY+KEFVHGD+GRT P +G +L R +I+QLDV + M+
Sbjct: 666 HWFLLDLETQAGTYVKEFVHGDMGRTTPHLGMLLKARTDIIQLDVVGMAMH 716
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGD 361
+ C T IY G Y K RN+SQ+ W ++ +R+G S++E+I +LP D
Sbjct: 412 VSCQLHHTNIYLMGSYRKMMRNMSQSPWFLNGQRIGSFSLQEVIANPLLPFFFPD 466
>gi|154333416|ref|XP_001562965.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059974|emb|CAM41930.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 721
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%)
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFE-IQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
YKFH+AGRED+DVRMLG GRPF+ E I RE +E ++ +E+ I++ + V L+
Sbjct: 524 YKFHSAGREDVDVRMLGEGRPFVLELISPIRERFTEDDLRCLEALISASYEGSIEVSQLR 583
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + K KQY ++W SR + D ++ I QKTP+RVL
Sbjct: 584 HTDADITVRLARHSESKVKQYRCVIWSSRAINDAAADPHVRAIHAMKDLSIQQKTPLRVL 643
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRRS R ++I+ M++ + + +FLL + TQAGTY+KEFVHGD+GRT P +G +L
Sbjct: 644 HRRSLHWRPRLIHSMRLTPL--NPHWFLLDLETQAGTYVKEFVHGDMGRTTPHLGMLLNA 701
Query: 542 RAEILQLDVTDVKMN 556
R +I+QLDV + M+
Sbjct: 702 RTDIIQLDVVGMAMH 716
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGD 361
IY GRY K RN+SQ+ W + +R+G S++E+I +LP D
Sbjct: 421 IYLMGRYRKMMRNMSQSPWFLHGQRIGSFSLQEVIANPVLPFFFPD 466
>gi|328768421|gb|EGF78467.1| hypothetical protein BATDEDRAFT_90402 [Batrachochytrium
dendrobatidis JAM81]
Length = 566
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 221/474 (46%), Gaps = 56/474 (11%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C +CLG+LQ Y + + L K +FS+ MPP +
Sbjct: 121 VCPACLGLLQIDYSSLATQAYQKY-----------LNKPYIRNEMTFSVSNRMPPQLSIR 169
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLET---LLDVKCGISTFHIR 219
+ +SL + ++ ++ SST K + P+E + C +
Sbjct: 170 QRSISLMI-----------EKMLASISSTTSDEKIDIPTPIEVKEIFKSLICASFSQESG 218
Query: 220 LTYSRVEASIRIQNFVEKIEGCK-----RRKVDAKNCLDTVKDKSAITGVENSVVSTTEV 274
+ Y VE+ + +Q +E + AK + T K K + S+ +
Sbjct: 219 MVYD-VESKLSLQLHLEHPATATDFMFLTKIPHAKFNVKTTKRKGVMIYAGASIEKIAKA 277
Query: 275 IPVDEKSSNGLQDNEPSETHE-FPLKKVNEPCRLECLCF-RTPIYFGGRYLKYSRNVSQT 332
+ L E HE PL V++ + L F + IY GRY K R +S +
Sbjct: 278 V--------ALAKYEDFYAHEQIPLSAVDQLPSISNLDFNHSQIYIAGRYCKLQRGISNS 329
Query: 333 RWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA- 391
WII +R+ E S+EE++G +I +KF +AGRED DV MLG+GRPF +E+ N
Sbjct: 330 PWIIGGKRLTEHSVEELVGSHIDLFFGVSEHKFSSAGREDGDVLMLGTGRPFYYELINPY 389
Query: 392 REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRP 451
R V +E + ++ KIN +V V++++IV + ++M++ + K K Y+ +V S+P
Sbjct: 390 RCVATESELATLQRKINDSNKDMVSVRDVQIVTRESTSIMKDSASSKSKSYSCVVEFSKP 449
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGS------- 504
+ I+ + + QK P RV RR+ L R K+I ++ I S
Sbjct: 450 VSMFILDEIAKRTDIA----VAQKNPTRV-PRRADLLRHKMIETIEFVPIEMSLMEDDSE 504
Query: 505 -SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR-AEILQLDVTDVKMN 556
+ ++M T AGTY+KEFVHGD GRT P + S++G A++++LDV ++ ++
Sbjct: 505 GVKTVRVNMKTSAGTYVKEFVHGDNGRTEPCLASLVGVESAKVIELDVLEIHLS 558
>gi|195147346|ref|XP_002014641.1| GL19289 [Drosophila persimilis]
gi|194106594|gb|EDW28637.1| GL19289 [Drosophila persimilis]
Length = 498
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 16/268 (5%)
Query: 296 FPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P V+E L+ + + P+ GRY K SR +S T W++ R E SIEEII ++
Sbjct: 229 IPPPAVDESLSLKSVDLQGPMVCVAGRYRKLSRELSHTPWLLQGVRQMEDSIEEIIIRSV 288
Query: 355 LPMCRGDSYK--FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE----IESKIN 408
P K F ++GRED+DVR LG GRPF+ EI N+R L +E +E ++
Sbjct: 289 GPHFTETVPKITFMSSGREDVDVRCLGKGRPFVLEIPNSRR---STLTREQALAMEQAVD 345
Query: 409 SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR 468
+ + V + NL++V + ++ GE +K+K Y AL + P E Q + +
Sbjct: 346 T--SGKVSILNLQVVPREQAMNIKTGEEQKRKYYRALCALKEPATLEMLQKL----QISE 399
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
+ I QKTPIRVLHRR R + I +K + ++ + TQAGTYIKE VHG+
Sbjct: 400 SFDIQQKTPIRVLHRRPLHTRPRTIYSVKARLQRDNPLVLVIDIVTQAGTYIKELVHGEF 459
Query: 529 GRTNPSIGSILGCRAEILQLDVTDVKMN 556
GRT PS SI+G +I LDV + ++
Sbjct: 460 GRTTPSFSSIIGKPIDIQALDVVGIDLD 487
>gi|17537241|ref|NP_496819.1| Protein Y48C3A.20 [Caenorhabditis elegans]
gi|6425342|emb|CAB60423.1| Protein Y48C3A.20 [Caenorhabditis elegans]
Length = 487
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 141/270 (52%), Gaps = 15/270 (5%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA--SIEEIIGG 352
++ K C + R P+Y GRY KYSR + Q+ W D++ E S+ E +
Sbjct: 190 KYIFKSPTRKCTFQLQFERDPVYIAGRYCKYSRCLPQSPWSEDKDAPREPGNSVSEKVCD 249
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE- 411
+ +F +GREDIDVRMLG+GRPF+ E++N R +K +E+ E
Sbjct: 250 LLKKQFGASDSRFVTSGREDIDVRMLGTGRPFVVELRNCRTTAPVRGIKYLETLKTVQEA 309
Query: 412 ---NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR 468
K V+V +L V + GE +K+KQY A + P+ D F S
Sbjct: 310 INVQKDVKVVSLTRVPRDVSEKLCVGEEDKRKQYCAYCYSILPISDSQFTAAQSKIP--- 366
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
+I+QKTP+RV+ RR+ L+RE+ I M K+ +F + + TQAGTYIKEFVHGD
Sbjct: 367 -LKIVQKTPVRVMKRRALLDRERWIYSMNFLKL--DDHHFEVRLETQAGTYIKEFVHGDF 423
Query: 529 GRTNPSIGSILGC---RAEILQLDVTDVKM 555
GRT PS+ +L +IL+LDV V +
Sbjct: 424 GRTRPSLAELLDVEHGEVDILELDVEKVDL 453
>gi|198473869|ref|XP_001356481.2| GA17631 [Drosophila pseudoobscura pseudoobscura]
gi|198138143|gb|EAL33545.2| GA17631 [Drosophila pseudoobscura pseudoobscura]
Length = 498
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 143/268 (53%), Gaps = 16/268 (5%)
Query: 296 FPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P V+E L+ + + P+ GRY K SR +S T W++ R E SIEEII ++
Sbjct: 229 IPPPAVDESLSLKSVDLQGPMVCVAGRYRKLSRELSHTPWLLQGVRQMEDSIEEIIIRSV 288
Query: 355 LPMCRGDSYK--FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE----IESKIN 408
P K F ++GRED+DVR LG GRPF+ EI N+R L +E +E ++
Sbjct: 289 GPHFTETVPKITFMSSGREDVDVRCLGKGRPFVLEIPNSRR---STLTREQALAMEQAVD 345
Query: 409 SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR 468
+ + V + NL++V + ++ GE +K+K Y AL + P E + + +
Sbjct: 346 T--SGKVSILNLQVVPREQAMNIKTGEEQKRKYYRALCALKEPATLEMLKKL----QISE 399
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
+ I QKTPIRVLHRR R + I +K + ++ + TQAGTYIKE VHG+
Sbjct: 400 SFDIQQKTPIRVLHRRPLHTRPRTIYSVKARLQRDNPLVLVIDIVTQAGTYIKELVHGEF 459
Query: 529 GRTNPSIGSILGCRAEILQLDVTDVKMN 556
GRT PS SI+G +I LDV + ++
Sbjct: 460 GRTTPSFSSIIGKPIDIQALDVVGIDLD 487
>gi|294953631|ref|XP_002787860.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902884|gb|EER19656.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 566
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 142/261 (54%), Gaps = 28/261 (10%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE----ERMGEASIEEIIGGNILPMCR--G 360
LE + R IY GRY K+SR +SQT W++ + E S EI + P+C G
Sbjct: 283 LEAVISRDSIYLFGRYRKFSRKISQTPWLVHDGSKPRSRCETSASEIA---LKPICEALG 339
Query: 361 DSY---KFHAAGREDIDVRMLGSGRPFLFEIQNARE---VPSELLVKE-IESKINSLENK 413
+ F +AGRED+DVRMLG+GRPF EI +A +P + + + +K ++ E
Sbjct: 340 ADWTRCSFCSAGREDVDVRMLGNGRPFAVEIPDAHRNLLLPHHKVSWDALAAKTDAFEVM 399
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
+ + ++ GW+ R K Y +VW P+ E ++++KE +I
Sbjct: 400 FIHPADKHVMEWLGWSSERH-----TKLYVCMVWSEDPVTAEVVARVNAMKEV----EIQ 450
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
Q+TP+RV+HRR+ R K+++ + E + + Y + + AG YIKEFVHGD GRT P
Sbjct: 451 QRTPLRVMHRRANAMRRKMMHSITCEMV--NPHYLKVSLACSAGMYIKEFVHGDFGRTRP 508
Query: 534 SIGSILGCR-AEILQLDVTDV 553
S+ +LG + +ILQLDV D+
Sbjct: 509 SMADLLGSKHCDILQLDVGDL 529
>gi|195114430|ref|XP_002001770.1| GI15158 [Drosophila mojavensis]
gi|193912345|gb|EDW11212.1| GI15158 [Drosophila mojavensis]
Length = 497
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 296 FPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P V EP +L+ + PI GRY K SR +S T W++ +R+ E SIEEII +
Sbjct: 226 IPPAAVEEPLQLQSIDLMGPIVCVAGRYRKLSRELSHTPWVLQGKRIMEESIEEIIAKQV 285
Query: 355 LP-----MCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKIN 408
P +C+ F ++GRED+DVR LG GRPF+ EI +A R S +++E ++
Sbjct: 286 APHFTDTVCK---VTFMSSGREDVDVRCLGKGRPFVLEIMDAKRSSLSRQQARQMEVAVD 342
Query: 409 SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLK--ET 466
+ K V + NL++V + T ++ GE +K+K Y AL + P+ T+ LK +
Sbjct: 343 -MSGK-VSIHNLQVVPREQLTHIKTGEEQKRKYYRALCVLDEPV------TVDILKKLQI 394
Query: 467 VRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHG 526
+ I QKTPIRVLHRR R + I +K + + ++ + +QAGTYIKE VHG
Sbjct: 395 SESFIIQQKTPIRVLHRRPLHTRPRSIYSVKACVSRENRRLLIIDVVSQAGTYIKELVHG 454
Query: 527 DLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ GRT PSI SI+G +IL LDV + ++
Sbjct: 455 EFGRTTPSISSIIGKPIDILALDVVGIDLD 484
>gi|324510224|gb|ADY44278.1| tRNA pseudouridine synthase Pus10 [Ascaris suum]
Length = 428
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 172/326 (52%), Gaps = 40/326 (12%)
Query: 242 KRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKV 301
K+R+ A +D++ +K+ + + + K+ N + S T E
Sbjct: 121 KKRRFAADVPIDSIYNKARVAAILTKL-----------KAENTISYKMSSPTRE------ 163
Query: 302 NEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWI--IDEERMGEASIEEIIGGNILPMCR 359
C + R PI+ RY K+SRN+ Q+ W +D ++ S+ E I + + +
Sbjct: 164 ---CTFSVVFEREPIFIASRYCKFSRNLPQSPWTASVDIPKVRGNSVCEKIASPFIRVAK 220
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR-EVP--SELL---VKEIESKINSLENK 413
DS +F A+GREDIDVRMLGSGRPF ++ N P E L +K+I +INS +
Sbjct: 221 CDSTRFIASGREDIDVRMLGSGRPFALQLINPHLTAPFRGEQLGESLKKIAEEINSQCD- 279
Query: 414 LVRV-KNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
+R+ L+ + + ++ + EK+K Y A + ++ L ++ +SS K + +I
Sbjct: 280 -IRLGAPLRRISMKETESLKVRQDEKRKSYTAYCYSTQSLDEKLLDELSS-KAPI---EI 334
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
QKTP+RVL RR L+R++ I ++ K+ +FL+ + TQAGTY+KEFVHGD GRT
Sbjct: 335 SQKTPVRVLKRRPLLDRKRTIFALQALKL--DEFHFLIRLETQAGTYVKEFVHGDFGRTR 392
Query: 533 PSIGSILGC---RAEILQLDVTDVKM 555
PS+ +L +IL LDV +V M
Sbjct: 393 PSLADLLKVEHGEVDILDLDVDNVDM 418
>gi|256078572|ref|XP_002575569.1| hypothetical protein [Schistosoma mansoni]
gi|353232340|emb|CCD79695.1| hypothetical protein Smp_145050 [Schistosoma mansoni]
Length = 977
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 153/315 (48%), Gaps = 73/315 (23%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK-FHAAGREDI 373
P+Y GRY+K SR + Q+ WII +R ++S+EE+I ILP ++ F +GRED+
Sbjct: 652 PLYLAGRYVKLSRRLPQSPWIIGSQRKLDSSVEELITQPILPRFGANAQSCFITSGREDV 711
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVK--------------------EIESKINSLENK 413
DVR LG GRPF E+ N +PS+++ + ++ S INS
Sbjct: 712 DVRCLGLGRPFAIELSNYELLPSQIIQRWSVNNKLAVECNEDEPLDLLKLASFINSTTQG 771
Query: 414 LVRVKNLKIVGSQGWT-LMREGEAEKQKQYAALVW-----ISRPLQDEDFQTISSLKETV 467
V +++L++V S+ T ++ GE K K Y A+ W I+ L + Q + L +T
Sbjct: 772 RVFIRDLQLVSSKSATAALKLGEMHKAKCYRAVCWCPQGGINTELLMKMLQYTTLLNQTN 831
Query: 468 ----------------------RCY----QILQKTPIRVLHRRSPLEREKII-------- 493
+ Y I Q TPIRVLHRR L R++ I
Sbjct: 832 ENIDHVNTIHWPPNKINSMKYGKIYFGPLDIHQLTPIRVLHRRPLLNRKRTIYNLCFMSY 891
Query: 494 ------------NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
++ K+ + F+L + +AGTY+KE VHGDLGR NPS+ SI G
Sbjct: 892 VETIGVNIFEFDDFKSWSKLYPEDELFILEIRCEAGTYVKELVHGDLGRCNPSLASIFGR 951
Query: 542 RAEILQLDVTDVKMN 556
+ +IL LDV V+++
Sbjct: 952 QLDILALDVIGVELD 966
>gi|195386422|ref|XP_002051903.1| GJ17254 [Drosophila virilis]
gi|194148360|gb|EDW64058.1| GJ17254 [Drosophila virilis]
Length = 497
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 10/265 (3%)
Query: 296 FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
P V + +L+ + P I GRY K SR +S T W++ +R+ E SIEEII ++
Sbjct: 228 IPPTAVEDALQLQAIELTGPLICVAGRYRKLSRELSHTPWVLHGKRIMEESIEEIIVRHV 287
Query: 355 LPMCRG--DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLE 411
P + F ++GRED+DVR LG GRPF+ EI NAR + ++E ++
Sbjct: 288 GPHFSETLEKITFMSSGREDVDVRCLGKGRPFVLEIANARRSSMTRQQAHQMEQAVDRTG 347
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ 471
V + NL++V + T ++ GE +K+K Y AL + +P+ + Q + + +
Sbjct: 348 K--VSIHNLQVVPREQLTHIKTGEEQKRKYYRALCVLEQPVTLDILQKL----QISASFD 401
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I QKTPIRVLHRR R + I +K + + ++ + +QAGTYIKE VHG+ GRT
Sbjct: 402 IQQKTPIRVLHRRPLHTRPRTIFSVKTRVFRDNPRLLIIDVVSQAGTYIKELVHGEFGRT 461
Query: 532 NPSIGSILGCRAEILQLDVTDVKMN 556
PSI SI+G +IL LDV + ++
Sbjct: 462 TPSISSIIGKPIDILALDVVGIDLD 486
>gi|195470178|ref|XP_002087385.1| GE16383 [Drosophila yakuba]
gi|194173486|gb|EDW87097.1| GE16383 [Drosophila yakuba]
Length = 500
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 150/266 (56%), Gaps = 10/266 (3%)
Query: 295 EFPLKKVNEPCRLECLCFRTPIY-FGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGN 353
+ P V E +L + + P+ GRY K SR +S T WI++ +R+ E SIEEII +
Sbjct: 229 QIPCSNVEESIKLISIDLQGPVVCVAGRYRKLSRELSHTPWILNGKRLMEESIEEIIIRD 288
Query: 354 ILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSL 410
+ P + F ++GRED+DVR LG GRPF+ EI NA R S+ +E +++
Sbjct: 289 VGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAIRSCLSKDEAFAMERAVDA- 347
Query: 411 ENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY 470
+ +V + NL++V + T ++ GE +K+K Y AL + P+ + + + + +
Sbjct: 348 -SGMVSIHNLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQL----QISTSF 402
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGR 530
I QKTPIRVLHRR R + I + G+ + ++ + TQAGTYIKE VHG+ GR
Sbjct: 403 DIQQKTPIRVLHRRPLHTRPRTIYSVNARVQRGNPKALIIDIVTQAGTYIKELVHGEFGR 462
Query: 531 TNPSIGSILGCRAEILQLDVTDVKMN 556
T PS+ SI+G +I LDV + ++
Sbjct: 463 TTPSLSSIIGKPIDIQALDVVGIDLD 488
>gi|408380980|ref|ZP_11178530.1| pseudouridylate synthase [Methanobacterium formicicum DSM 3637]
gi|407816245|gb|EKF86807.1| pseudouridylate synthase [Methanobacterium formicicum DSM 3637]
Length = 406
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 136/254 (53%), Gaps = 22/254 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QTRW + R M S+EE++ +L G
Sbjct: 163 NPLFIEGRYRKLIRGIPQTRWPCRKCRGKGCKKCDFTGKMYPESVEELMAETVLKATEGQ 222
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDVRMLG GRPF+ EI+ + EL ++E+ SKIN V V +LK
Sbjct: 223 ESKFHGAGREDIDVRMLGRGRPFVLEIKEPK--IRELNLEELTSKINEYCQGKVEVLDLK 280
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+V + ++ E K Y ALV + + +E ++SL I Q+TPIRV
Sbjct: 281 MVSKDRRSGIKASSTETYKIYRALVELDQETDEEKLNALNSLN------IIKQRTPIRVS 334
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R + + +++ K+ SS L+ C + G YIKE + GD RT PS+ S+LG
Sbjct: 335 HRRADKIRTREVKEIQV-KMLDSSHLELVVNC-EGGLYIKELISGDEDRTQPSVTSLLGI 392
Query: 542 RAEILQLDVTDVKM 555
A+ ++LDV +V +
Sbjct: 393 NAKCVELDVLEVNI 406
>gi|294950747|ref|XP_002786753.1| hypothetical protein Pmar_PMAR008878 [Perkinsus marinus ATCC 50983]
gi|239901107|gb|EER18549.1| hypothetical protein Pmar_PMAR008878 [Perkinsus marinus ATCC 50983]
Length = 576
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 28/261 (10%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE----ERMGEASIEEIIGGNILPMCR--G 360
LE + R IY GRY K+SR +SQT W++ + E S EI + P+C G
Sbjct: 295 LEAVISRDSIYLFGRYRKFSRKISQTPWLVHDGSKPRSRCETSASEIA---LKPICEALG 351
Query: 361 DSY---KFHAAGREDIDVRMLGSGRPFLFEIQNARE---VPSELLVKE-IESKINSLENK 413
+ F +AGRED+DVRMLG+GRPF EI A +P + + + +K ++ E
Sbjct: 352 ADWTRCSFCSAGREDVDVRMLGNGRPFAVEIPEAHRNLLLPHHKVSWDALAAKTDAFEVM 411
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
+ + ++ GW+ R K Y +VW P+ E ++++KE +I
Sbjct: 412 FIHPADKHVMEWLGWSSERH-----TKLYVCMVWSEDPVTAEVVARVNAMKEV----EIQ 462
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
Q+TP+RV+HRR+ R K+++ + E + + Y + + AG YIKEFVHGD GRT P
Sbjct: 463 QRTPLRVMHRRANAMRRKMMHSITCEMV--NPHYLKVSLACSAGMYIKEFVHGDFGRTRP 520
Query: 534 SIGSILGCR-AEILQLDVTDV 553
S+ +L + +ILQLDV D+
Sbjct: 521 SMADLLSSKHCDILQLDVGDL 541
>gi|84490319|ref|YP_448551.1| pseudouridylate synthase [Methanosphaera stadtmanae DSM 3091]
gi|121696469|sp|Q2NE45.1|PUS10_METST RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|84373638|gb|ABC57908.1| predicted pseudouridylate synthase [Methanosphaera stadtmanae DSM
3091]
Length = 407
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 22/253 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE---------ERMGEA---SIEEIIGGNILPMCRGDS 362
PI+ G+Y K R + QT+W + G+ ++E++I ILPM G++
Sbjct: 163 PIFIEGKYRKLVRGIPQTKWPCTHCKGKGCEACDYTGQQYKDTVEDLISREILPMTNGNT 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
KFH +GREDIDVRMLG GRPF+ E+++ ++ +K + +NS + + + +LK
Sbjct: 223 TKFHGSGREDIDVRMLGEGRPFVIEVKHP--FKRKIDLKFLRVLVNSHSDGKIEINDLKY 280
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + ++ E K Y+A+ + +D I LK I Q+TPIRV H
Sbjct: 281 VTKERKASIKNSSVESYKIYSAIAEFENGVTSKDIYNIEKLK------TIDQRTPIRVEH 334
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ L R + I +++E+I S + L+ C Q G YIKE + GD RT PS+ SI +
Sbjct: 335 RRADLIRTREIKNIEVERI-NSKKLHLIIKC-QGGLYIKELISGDNNRTKPSVSSITNNQ 392
Query: 543 AEILQLDVTDVKM 555
AE QLDV V +
Sbjct: 393 AECTQLDVLKVHI 405
>gi|159112451|ref|XP_001706454.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
gi|157434551|gb|EDO78780.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
Length = 576
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 156/588 (26%), Positives = 254/588 (43%), Gaps = 120/588 (20%)
Query: 37 LNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVL----GEQADL 92
++ A Q + +D + ++ + C CI R V + +S+ C L E D+
Sbjct: 25 VDPATQEITSDLIAYMIKRGFCPWCILR-----VSLWDDISLCGFSCEALRRGLSEVFDV 79
Query: 93 HQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLE 152
H ++ + C SCLGIL YC + F + ++ G + ++ L
Sbjct: 80 HFP-EGIDLSDCPSCLGIL--PYCSQES----------FKNDLVHRIQNSGFESPNYILN 126
Query: 153 VSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCG 212
+ P ++ + +L V Y + + + ++ +D L L P++ +L G
Sbjct: 127 IRTPSCLIVRD---ALLVHELYGCASC--ESQVLPINAGEDTLTELLPIPIKRILKYMLG 181
Query: 213 -----------ISTFHIRLTYSRVEASIRIQNF----VEKIEGCKRRKVDAKNCLDTVKD 257
+ H+R VE S+ E++ +R++ +A D
Sbjct: 182 PYCTPRLGMPVATNAHLRCVI-HVETSLPPPEIPASAYEQMSASRRKEHNALRRRGKDAD 240
Query: 258 KSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSE---THEFPLK----KVNEPCRLECL 310
+ + G+ + ++ GL ++E E + + PL+ K+ LEC
Sbjct: 241 E-MLQGLLSDIIG------------KGLHNHELIEKLASTKIPLRYQNIKITVTTVLEC- 286
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRW-------------IIDEERMGE----------ASIE 347
IY GRYLK+ R +SQT + + E+ G+ S+
Sbjct: 287 ---DSIYIAGRYLKHQRYISQTGYEGKAIQESSLVTPVRKEDNEGDDWEPHGFHPKISVS 343
Query: 348 EIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKI 407
++ + D FHAAGREDIDVRM G GRPF+ E+ N++ S + + +I
Sbjct: 344 SLLIPFFIAHGSSDDAIFHAAGREDIDVRMKGDGRPFIVELINSKNGLSRDWIS-LARRI 402
Query: 408 NSLEN--KLVRVKNLKIV-----GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTI 460
N+ N K + + +V G + + G EK+K Y A+ W +PL
Sbjct: 403 NTDPNVSKFIHIHGDTLVAFEKNGRELLDKLASGSNEKRKSYRAVCWTEKPLP------- 455
Query: 461 SSLKETVRCYQ---ILQKTPIRVLHRRSPLEREKIINWMK-IEKIAGSSQYFLLHMCTQA 516
S+ +ET R Q I Q TPIRVLHRR+ ++R K++ +K I K+ S YF++ + QA
Sbjct: 456 SNAEETCRTIQNLSIEQATPIRVLHRRTAMKRTKLVYSLKLIRKL--SDHYFVIDIFAQA 513
Query: 517 GTYIKEFVHGDLGRTNPSIGSIL---------GCRAEILQLDVTDVKM 555
GTYIKEF + D GRT PS+ +L EILQLDV V M
Sbjct: 514 GTYIKEFCNSDFGRTRPSLSELLFGECIHGEKQPEVEILQLDVLTVDM 561
>gi|219117181|ref|XP_002179385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409276|gb|EEC49208.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 571
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 147/298 (49%), Gaps = 66/298 (22%)
Query: 312 FRTPIYFGGRYLKYSRNVSQTRWIIDEE----RMGEASIEEII-------GGNI------ 354
+R P Y G Y K R+VSQT + + +E ++G S+EE I G I
Sbjct: 283 WRRPFYLRGLYTKLRRDVSQTPFFVVDEGKRRKLGVTSVEEQIVPVVSRYSGGISCHNKD 342
Query: 355 --LP------MCRGDSYKFHAAGREDIDVRML-------------GSGRPFLFEIQNARE 393
LP MC KFHA+GRED+DVRML SGRPF+ E+ +A
Sbjct: 343 PSLPENVVFGMC-----KFHASGREDMDVRMLLPEANASDTSNRLASGRPFVCEVIDALR 397
Query: 394 VPSELLVKEIESKINSL--------------ENKLVRV-KNLKIVGSQGWTLMREGEAEK 438
+PS + I +N N + + ++ + + ++ +K
Sbjct: 398 LPSVTDLLRIVDNVNKTTSVNENMTLPRCYGRNDMTSISRDFSFAPASSFKNLQAETEDK 457
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETVRCY--QILQKTPIRVLHRRSPLEREKIINWM 496
K Y L W + PL ED LK+ + + Q+ Q+TPIRVLHRRS + R + +
Sbjct: 458 VKFYGCLCWSATPLPKED----EDLKKLLGTFPLQLKQRTPIRVLHRRSNMIRVRHVLSA 513
Query: 497 KIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ +I YF LH+ T AGTY+KEFVHGDLGRT PS+ ++L C+ +IL+LD ++
Sbjct: 514 QAHRI--DDHYFRLHISTDAGTYVKEFVHGDLGRTVPSVSALLKCKTDILELDCEGIQ 569
>gi|308163066|gb|EFO65429.1| Pseudouridylate synthase, putative [Giardia lamblia P15]
Length = 576
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 156/582 (26%), Positives = 250/582 (42%), Gaps = 108/582 (18%)
Query: 37 LNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNI 96
++ A Q + +D + ++ + C CI R V + +S+ C L + L +
Sbjct: 25 VDAATQEITSDLIAYMIKRGFCPWCILR-----VSLWDDISLCGFSCEAL--RKGLSEVF 77
Query: 97 S-----SVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSL 151
S ++P+ C SCLGIL YC + F + ++ G + ++ L
Sbjct: 78 SVRFPEGIDPSECPSCLGIL--LYCSQES----------FKNDLVHRIRNSGFESPNYIL 125
Query: 152 EVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC 211
+ P ++ + +L V Y + + ++ +D LK L P++ +L
Sbjct: 126 NIRAPSCLIVRD---ALLVHELYGCANC--ESQVLPTNADEDTLKELLPIPVKRILKYML 180
Query: 212 G-----------ISTFHIRLTYSRVEASIRIQNF----VEKIEGCKRRKVDAKNCLDTVK 256
G + H+R VE S+ E++ +R++ +A
Sbjct: 181 GPYCMPRLGMPVATNAHLRCVI-HVETSLSPPEIPASAYEQMSASRRKEHNALRRRGKDA 239
Query: 257 DKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLK----KVNEPCRLECLCF 312
D+ + G+ + ++ D++ N + + T + PL+ K+ LEC
Sbjct: 240 DE-MLQGLLSDII--------DKELHNHALIEKLANT-KIPLRYQHVKITVTTALEC--- 286
Query: 313 RTPIYFGGRYLKYSRNVSQTRW---IIDEERM-------------GEA-------SIEEI 349
IY GRYLK+ R +SQT + I E+ GEA SI +
Sbjct: 287 -DSIYIAGRYLKHQRYISQTGYENKAIQEKSPIAPTQKEDKESDDGEAHGFHPKISISSL 345
Query: 350 IGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSE---LLVKEIESK 406
+ + D FHAAGREDIDVRM G GRPF+ E+ N++ S L ++I +
Sbjct: 346 LVPFFIAYGSSDDAIFHAAGREDIDVRMKGDGRPFIVELINSKNGLSRDWASLARDINAD 405
Query: 407 INSLENKLVRVKNLKIVGSQGWTL---MREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
+ + + L G L + G EK+K Y A+ W +PL L
Sbjct: 406 PHVSQFIHIHGDTLVAFEKNGRELIDKLASGSNEKRKSYRAVCWTEKPLP----SNTEEL 461
Query: 464 KETVRCYQILQKTPIRVLHRRSPLEREKIINWMK-IEKIAGSSQYFLLHMCTQAGTYIKE 522
V+ I Q TPIRVLHRR+ ++R K+I+ +K + K+ S YF++ + QAGTYIKE
Sbjct: 462 CRAVQNLSIEQATPIRVLHRRTAMKRTKLIHGLKFVRKL--SDHYFVIDIFAQAGTYIKE 519
Query: 523 FVHGDLGRTNPSIGSIL---------GCRAEILQLDVTDVKM 555
F + D GRT PS+ +L EILQLDV V M
Sbjct: 520 FCNSDFGRTRPSLSELLFGEYIHGEKQPEVEILQLDVLTVDM 561
>gi|346467741|gb|AEO33715.1| hypothetical protein [Amblyomma maculatum]
Length = 462
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 167/353 (47%), Gaps = 33/353 (9%)
Query: 135 IAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDA 194
I E VK G F+ +S+P T+ + + +Y+K K+ E ++K S + S K+
Sbjct: 137 IVEAVKDSGCIFSKFTFLLSLPVTLDLRHHAMVIYLKDKF--EEFYKGSSNIDFVSAKEV 194
Query: 195 LKFALTNPLETLLDVK-CGISTFHIRLTY----SRVEASIRIQNFVEKIEGCKRRKVDAK 249
K+ + V+ S F + +T + E ++ F E ++RK ++
Sbjct: 195 WKYIIGPMFADHFGVEFSATSGFQVSVTLPSPNAEEECGFLLKKFPESFPNRQQRKHQSR 254
Query: 250 NCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLEC 309
A+ + N P D + G R+E
Sbjct: 255 EIFTRAAVLDALRKISNDDFKKLCTCPPDRPAKIG--------------------SRVEV 294
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAG 369
C P+Y GRY KYSR +SQT WI++ +R+ E+S++E+I + + F ++G
Sbjct: 295 SCVHMPVYLAGRYCKYSRLLSQTPWILNGKRIMESSVQELITDVVTKHIPNEKIMFSSSG 354
Query: 370 REDIDVRMLGSGRPFLFEIQNAREVPSELL-VKEIESKINSLENKLVRVKNLKIVGSQGW 428
RED+DVRMLG GRPF+ EI ++ + ++ IE +IN+ K + V +L+++
Sbjct: 355 REDVDVRMLGRGRPFVLEIFKTKKAHFTVADMEAIEQEINA-NTKDISVSDLQVISKDMT 413
Query: 429 TLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
++++GE K+K Y AL SRP+ +D ++ LK+ + QKTPIRVL
Sbjct: 414 QVLKDGEESKRKTYRALCCASRPITVDDVALVAGLKDVT----LKQKTPIRVL 462
>gi|410722281|ref|ZP_11361587.1| TIGR01213 family protein [Methanobacterium sp. Maddingley MBC34]
gi|410597316|gb|EKQ51943.1| TIGR01213 family protein [Methanobacterium sp. Maddingley MBC34]
Length = 406
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 22/254 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QTRW R M S+EE++ +L +G
Sbjct: 163 NPLFIEGRYRKLIRGIPQTRWPCRRCRGKGCEKCDYTGKMYLESVEELMAEKVLKATKGV 222
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDVRMLG GRPF+ EI+ + +L ++E+ S+IN V V +LK
Sbjct: 223 ESKFHGAGREDIDVRMLGRGRPFVLEIKEPK--VRDLNLEELTSQINQHCQGKVEVLDLK 280
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+V + ++ E K Y ALV + + +E +++LK I Q+TPIRV
Sbjct: 281 MVNKDRRSGIKASSTETYKIYRALVELDQDTDEEKLNILNTLK------VIQQRTPIRVS 334
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R + + +++ K+ S+ ++ C + G YIKE + GD RT PS+ S+LG
Sbjct: 335 HRRADKIRTREVKEIQV-KLLDSNHLEMVVNC-EGGLYIKELISGDEDRTQPSVTSLLGI 392
Query: 542 RAEILQLDVTDVKM 555
A+ ++LDV +V +
Sbjct: 393 TAKCVELDVLEVNI 406
>gi|268323737|emb|CBH37325.1| conserved hypothetical protein [uncultured archaeon]
Length = 415
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 138/252 (54%), Gaps = 23/252 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDSY 363
++ GRY K+ R + QT+W+ E R M S+EE+IGG+IL G
Sbjct: 175 VFIYGRYRKFKRGIPQTKWLCRECRGKGCERCDFTGKMYAESVEELIGGSILEEFGGVVT 234
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GREDID RMLGSGRPF+ EI+ R EL +K +E+K+N V V + V
Sbjct: 235 VLHGSGREDIDARMLGSGRPFVMEIKEPR--LRELDLKRLENKVNDENKDKVEVLEFQYV 292
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
+ ++ A+ K Y A+V + + +ED + S+L + I Q+TP+RV+HR
Sbjct: 293 KREAVAKIK--NAKVDKTYRAVVSLKTGVLEEDLR--SALDNLIGAV-IEQRTPLRVVHR 347
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ + ++ S + ++ + G YIKE + GD GRT PS+ ++LG A
Sbjct: 348 RADLVRKRKVYDARLV----SFEVPIVEIKCDGGLYIKELISGDNGRTIPSLSALLGTEA 403
Query: 544 EILQLDVTDVKM 555
E+ +LDV DV +
Sbjct: 404 EVKELDVVDVAI 415
>gi|392353322|ref|XP_003751462.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like, partial
[Rattus norvegicus]
Length = 176
Score = 138 bits (348), Expect = 8e-30, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 8/176 (4%)
Query: 382 RPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQK 440
RPF E+ N V + +KE++ KIN +K ++V++L++V + M+EGE EK K
Sbjct: 1 RPFAVELLNPHRVHFTSQEIKELQQKINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTK 59
Query: 441 QYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEK 500
Y+AL+W +R +Q +D + LK+ +I QKTP+RVLHRR R + I+ MK
Sbjct: 60 TYSALIWTNRAIQKKDIGFLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHY 115
Query: 501 IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
+ +F LH+ TQAGTYIKEFVHGD GRT P+IGS++ A+I++LDV V ++
Sbjct: 116 L--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADIVELDVESVDVD 169
>gi|288559421|ref|YP_003422907.1| pseudouridylate synthase [Methanobrevibacter ruminantium M1]
gi|288542131|gb|ADC46015.1| pseudouridylate synthase [Methanobrevibacter ruminantium M1]
Length = 422
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 22/252 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIID-------EE-----RMGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + QT+W EE + S+EE++ +L G
Sbjct: 178 NPIFIEGRYRKLIRTIPQTKWPCRKCKGKGCEECNFTGKQYPESVEELLSEVVLKHTNGY 237
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDVRMLG+GRPF+ EI+ + ++ +K+IE ++ NLK
Sbjct: 238 EAKFHGAGREDIDVRMLGTGRPFVLEIKEPK--IRKIDLKKIEEEVAISAKGKTEYLNLK 295
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++E + K Y ALV +++ED + + +L + I Q+TPIRV
Sbjct: 296 FTERRRKAEIKESSPDTYKVYRALVKCEDYIKEEDLEKLQTL------HIIQQRTPIRVS 349
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R+K + +K E I S+ F + + T+ G YIKE + D GR+NPS+ +LG
Sbjct: 350 HRRADKIRQKEVKEIKAEFI--DSKTFEMIIKTEGGLYIKELISSDEGRSNPSVSEVLGT 407
Query: 542 RAEILQLDVTDV 553
+A +LDV +V
Sbjct: 408 QAICAELDVIEV 419
>gi|383620735|ref|ZP_09947141.1| putative pseudouridylate synthase [Halobiforma lacisalsi AJ5]
gi|448698326|ref|ZP_21698965.1| pseudouridylate synthase [Halobiforma lacisalsi AJ5]
gi|445780945|gb|EMA31815.1| pseudouridylate synthase [Halobiforma lacisalsi AJ5]
Length = 461
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 131/263 (49%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+ +
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYDTSVEQTVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ E + E+E+KIN +
Sbjct: 238 HVVAAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPHERDPD--PAELEAKINEAAD 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCYQ 471
V V+ L++ + + R E + K Y A V S P+ ++ F + I+ L T
Sbjct: 296 GSVEVEGLRLATYE--MVERVKEHDASKHYRADVEFSEPVDEKRFDEAIAELDGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q+TP RV HRR+ L RE+ + ++ E + + LH + G Y+KEFV GD GRT
Sbjct: 350 LAQETPQRVDHRRAALTRERTVYDLEGELRSSTEAEVRLH--GEGGLYVKEFVSGDDGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ LG AE+ LDVT V+
Sbjct: 408 EPSLAGTLGVDAEVTALDVTGVE 430
>gi|257076448|ref|ZP_05570809.1| hypothetical protein Faci_05260 [Ferroplasma acidarmanus fer1]
Length = 380
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y G Y K R++ QTRWI SIE +IG +L G +YK H +GRED+D
Sbjct: 154 PLYIYGTYKKERRDIPQTRWI----NGSGDSIESLIGEKLLKFTGGKNYKLHGSGREDVD 209
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
V MLG+GR F+ E+ +KE ++N+ N + + NL+ G + ++
Sbjct: 210 VMMLGNGREFIMEVDEPE--IRNFSIKEFMEEVNNSGNG-ISISNLEFTGKKRVKEIK-- 264
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
EA K Y A+V + P+ + T+ T R + I Q+TP RV+ RS L R+K I
Sbjct: 265 EATYDKIYRAVVECNTPINE---NTLLMAVNTFRNFTISQRTPTRVIGNRSDLIRKKEIK 321
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
++ IE I ++ + +Q+GTYIKE ++GD GRT PS+ S+ G ++ LDV ++
Sbjct: 322 YINIEDIHDKEA--VVKIRSQSGTYIKELINGDGGRTTPSLSSVYGYELKVKCLDVLKIE 379
>gi|397779470|ref|YP_006543943.1| hypothetical protein BN140_0304 [Methanoculleus bourgensis MS2]
gi|396937972|emb|CCJ35227.1| putative protein MJ0041 [Methanoculleus bourgensis MS2]
Length = 411
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 25/254 (9%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG------------EASIEEIIGGNILPMCRGDS 362
P++F GRYLKY R + QT W R S+EE+IG ++ ++
Sbjct: 163 PVFFSGRYLKYERGIPQTHWDCRSCRGAGCERCNFTGKQYADSVEELIGRPVIETFGAEN 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKIN-SLENKLVRVKNLK 421
H AGREDID RMLGSGRPF+ E++ R+ +L +E++IN S E ++ +
Sbjct: 223 AVLHGAGREDIDARMLGSGRPFVMEVEAPRKRLVDLAA--LEAEINRSAEGRVA----VH 276
Query: 422 IVGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ G +++ +++K K+Y LV I P+ ++F+T + + I Q+TP RV
Sbjct: 277 LTGWADRKMVQSLKSDKAHKKYRILVEIDGPVTSDEFRTA---LDQLNGVTIRQRTPTRV 333
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ RE+ + + I+ + + + +AG YIKE V GD GRT PS+ ILG
Sbjct: 334 SHRRADKVRERQV--IDIQCTGTQDDRYWVEVVGEAGLYIKELVSGDGGRTRPSLAQILG 391
Query: 541 CRAEILQLDVTDVK 554
A ++ LDV V+
Sbjct: 392 RTASVVSLDVVQVR 405
>gi|358255526|dbj|GAA57219.1| putative tRNA pseudouridine synthase Pus10 [Clonorchis sinensis]
Length = 667
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 154/316 (48%), Gaps = 74/316 (23%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL-PMCRGDSYKFHAAGREDI 373
P+ GRY+K R + QT WII +R +S+EE+I + R + F ++GRED+
Sbjct: 336 PVVIAGRYVKLDRYLPQTPWIIGTKRKLSSSVEELIADTVGEQFGRNTNITFSSSGREDV 395
Query: 374 DVRMLGSGRPFLFEIQN---------------------AREVPSELLVKEIESKINSLEN 412
DVR LG GRPF+ +I+N E S + + + + +NS
Sbjct: 396 DVRCLGLGRPFILQIENYDTSLKKVIENFSKFSAKSHTPLENDSSVDLLLMATLVNSRTG 455
Query: 413 KLVRVKNLKIVG-SQGWTLMREGEAEKQKQYAALVWI-SRPLQDEDFQTIS--------- 461
+ V++L++V + ++ GE EK K Y A+ W + L + Q+++
Sbjct: 456 GRLFVRDLQVVNPTDAARAIKHGELEKSKCYRAVCWCGAGGLTTDLVQSLARQCRQLNSD 515
Query: 462 SL--KETVRCYQ-------------------ILQKTPIRVLHRRSPLEREKIINWMKIE- 499
SL + T+ Y I Q TPIRVLHRR+ LER + ++ +++
Sbjct: 516 SLPPESTLHTYSWPPAAFEGPIGYLDYGPITICQPTPIRVLHRRAALERMRDVHLLRLAD 575
Query: 500 -----KIAG---------SSQY-----FLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
K+A SS Y F+L + AGTY+KEFVHGDLGR+ PS+ S+LG
Sbjct: 576 YRALMKVAAPEYADYEQWSSLYPAEELFVLELRCDAGTYVKEFVHGDLGRSRPSLASLLG 635
Query: 541 CRAEILQLDVTDVKMN 556
+IL LDV V++N
Sbjct: 636 RPVDILTLDVVAVELN 651
>gi|52550130|gb|AAU83979.1| conserved hypothetical protein [uncultured archaeon GZfos35B7]
Length = 415
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 23/252 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDSY 363
++ GRY K+ R + QT+W+ +M S+EE+IGG+IL G +
Sbjct: 175 VFIYGRYRKFKRGIPQTKWLCRVCRGKGCERCDFTGKMYAESVEELIGGSILEEFGGVAT 234
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GREDID RMLGSGRPF+ EI+ R EL +K +E+K+N V V L+ V
Sbjct: 235 VLHGSGREDIDARMLGSGRPFVMEIKEPR--LRELDLKWLENKVNEENKDKVEVLELQYV 292
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
+ ++ A+ K Y A+V + + +ED + S+L + I Q+TP+RV+HR
Sbjct: 293 KREAVAKIK--NAKVDKTYRAVVSLKTDVLEEDLR--SALDNLIGAV-IEQRTPLRVVHR 347
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ + ++ S + ++ G YIKE + GD GRT PS+ +LG A
Sbjct: 348 RADLVRKRKVYDARVI----SFEVPIVEFKCDGGLYIKELISGDNGRTIPSLSELLGTEA 403
Query: 544 EILQLDVTDVKM 555
++ +LDV DV +
Sbjct: 404 KVKELDVVDVAI 415
>gi|333988487|ref|YP_004521094.1| hypothetical protein MSWAN_2287 [Methanobacterium sp. SWAN-1]
gi|333826631|gb|AEG19293.1| Conserved hypothetical protein CHP01213 [Methanobacterium sp.
SWAN-1]
Length = 415
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 22/254 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QT+W + +M + S+EE++ + + +G
Sbjct: 172 NPLFIEGRYRKLLRGIPQTKWPCTKCKGKGCERCNFTGKMYQESVEELVSPDAVKATQGS 231
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
S KFH AGREDIDVRMLG+GRPF+ EI+ + ++ ++E+E +N V + N+K
Sbjct: 232 SSKFHGAGREDIDVRMLGNGRPFVLEIKEPK--LRDIDLEELEENVNKHAEGKVEILNMK 289
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
VG + + ++ + K Y A+ + ++DE ++++S+K I Q+TPIRV
Sbjct: 290 FVGKERRSQIKTSSTDTYKVYRAIAELEDEVEDEVLRSLNSIK------IIKQRTPIRVS 343
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R + + M+ +K+ + ++ + G YIKE + D RT PS+ +LG
Sbjct: 344 HRRADKIRTREVRNMEFKKLDAKTLELVIE--CEGGLYIKELISSDESRTKPSVSEVLGT 401
Query: 542 RAEILQLDVTDVKM 555
A+ ++LDV +V +
Sbjct: 402 PAKCVKLDVLEVNI 415
>gi|88604253|ref|YP_504431.1| pseudouridylate synthase [Methanospirillum hungatei JF-1]
gi|88189715|gb|ABD42712.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
Length = 415
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 126/256 (49%), Gaps = 29/256 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII------------DEERMGEASIEEIIGGNILPMCRGDS 362
P++ GRY KY R + QT W + S+EE+IG +LP+ + +
Sbjct: 162 PLFLYGRYFKYERGIPQTHWACRACKGAGCEACDGTGKQYRDSVEELIGAPLLPIFKAER 221
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H AGREDID M+GSGRPF+ EI N R ++ K +E IN V V +++
Sbjct: 222 VFLHGAGREDIDAIMVGSGRPFILEIVNPRIRDAD--PKALEDAINKYNEGRVGVTDIR- 278
Query: 423 VGSQGWTLMREGEAEK----QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPI 478
W+ E E K K+Y LV I + D Q S + + I Q+TP
Sbjct: 279 -----WSARSEVETLKSHKGHKKYRILVDIDGSVPDTALQ---SAVQQLSGALIRQRTPT 330
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ RE+ + + I + F+L + +AG YIKE + GD GRT PS+ +
Sbjct: 331 RVAHRRADKVRERGV--LDIRYTGKEGKDFVLEVTGEAGLYIKELISGDQGRTTPSLTEV 388
Query: 539 LGCRAEILQLDVTDVK 554
L A ++QLDV V+
Sbjct: 389 LNTPARVVQLDVIHVE 404
>gi|48477462|ref|YP_023168.1| pseudouridylate synthase [Picrophilus torridus DSM 9790]
gi|74568060|sp|Q6L227.1|PUS10_PICTO RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|48430110|gb|AAT42975.1| hypothetical conserved protein [Picrophilus torridus DSM 9790]
Length = 377
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 18/239 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y G Y+K SR++SQTRWI + GE SIE IIG + M ++Y H +GRED+D
Sbjct: 153 PVYIYGVYIKKSRDISQTRWI---HKTGE-SIESIIGNELRSMTGCENYYLHGSGREDVD 208
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
V MLG+GR F+ E + +L E++ ++N+ + ++ + NL S T+ R
Sbjct: 209 VMMLGNGREFVIEAAMPKRRYIDLY--ELQLRVNA--SGILFIYNLSY--SSKATVRRIK 262
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
+K Y A V + L + + S + I Q+TP+RV++ RS L R K IN
Sbjct: 263 SELHEKLYIAEV--TGDLNKDIKKACSKFNNLI----IEQRTPLRVINHRSDLVRRKKIN 316
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
++ I I LL +C +AGTYIKE V+GD GRT PS+ S+ G + ++ LDV +
Sbjct: 317 YINIISIMNGRA--LLKICAEAGTYIKELVNGDNGRTVPSLSSVYGSQLQVSSLDVVKI 373
>gi|440492452|gb|ELQ75017.1| putative pseudouridylate synthase [Trachipleistophora hominis]
Length = 322
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 137/264 (51%), Gaps = 34/264 (12%)
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
C ++ G Y+K RNVSQT E + + I N DS F AA
Sbjct: 62 CKVVNHSLFIYGIYIKKCRNVSQTPMPNVENAVSD------IFQNFEKFYAADSSNFVAA 115
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL-KIVGSQG 427
GRED+DV + SGRPF E++N P + L I I EN V +KNL ++ G+
Sbjct: 116 GREDVDVINI-SGRPFFVELKN----PKKNLFTPI--PIAYRENDFVLLKNLLRVKGTLI 168
Query: 428 WTLMREGEAEKQKQYAALVWISRP----------------LQDEDFQTISSLKETV-RCY 470
++ +GE E +K Y A+V+ S+P + E+ L+E V +
Sbjct: 169 KKIILDGEREHKKVYNAVVFCSKPKDPTNIFNFEHDDGYEAETENVLQAKELEELVNKKL 228
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGR 530
I+QKTP+RVLHRR+ + R K I KIEK QY L + + AGTYIKEF+ GD GR
Sbjct: 229 SIMQKTPLRVLHRRTNIIRPKEITITKIEKF---QQYLQLTIQSSAGTYIKEFITGDFGR 285
Query: 531 TNPSIGSILGCRAEILQLDVTDVK 554
T PS+ S+L C + L+LDV +V+
Sbjct: 286 TVPSLASLLRCWCDCLELDVLEVE 309
>gi|256810524|ref|YP_003127893.1| putative pseudouridylate synthase [Methanocaldococcus fervens AG86]
gi|256793724|gb|ACV24393.1| THUMP domain protein [Methanocaldococcus fervens AG86]
Length = 441
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 132/253 (52%), Gaps = 25/253 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRG 360
P++ GRY K R + QTRW + R G+ S+EEII L +G
Sbjct: 189 NPLFIKGRYRKLIRGIPQTRWPCRKCR-GKGCELCNYTGKKYPISVEEIIAKPFLEATKG 247
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDVRMLG GRPF+ EI+ + ++ + +I +IN ++ V V NL
Sbjct: 248 KDAKFHGAGREDIDVRMLGDGRPFVLEIKEPK--IRKIDLDKIAEEIN--KDGRVEVLNL 303
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ + + + +K Y ALV S + D+D + L++ + I QKTP RV
Sbjct: 304 EFGVRKDKVIFK--NTPHRKTYRALVECSEKITDDDLKL---LEKELENRTIYQKTPRRV 358
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
LHRR+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 359 LHRRADLERIRKVYKVKTNKV--DDNHFEMIIYCDGGLYIKELISGDDGRTNPSVSSILN 416
Query: 541 CRAEILQLDVTDV 553
+LDV +
Sbjct: 417 KNCICKELDVLKI 429
>gi|429965460|gb|ELA47457.1| TIGR01213 family protein [Vavraia culicis 'floridensis']
Length = 322
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 142/265 (53%), Gaps = 34/265 (12%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
+C ++ G Y+K RNVSQT + + I + + DS+ F A
Sbjct: 61 DCKVVNYSLFIYGVYIKKCRNVSQTPMPNVNNAVSD------IFHDFVQFYAADSFNFVA 114
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL-KIVGSQ 426
AGRED+DV + SGRPF E++N R+ L V + EN V +KNL ++ G
Sbjct: 115 AGREDVDVINV-SGRPFFVELKNPRQ---HLFVP---IPVVYWENDFVLLKNLLRVKGKP 167
Query: 427 GWTLMREGEAEKQKQYAALVWISRPL-------------QDEDFQTI---SSLKETV-RC 469
++ +GE E +K+Y+A+V+ S+P D D + + S L++ V +
Sbjct: 168 IKKIILDGEREHKKRYSAIVFCSKPSDPTNLFNFEGEGDHDTDAENLLHSSDLEQLVNKK 227
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
++QKTP+RVLHRR+ + R K I +I KI QY + + + AG YIKEF+ GD G
Sbjct: 228 LLVMQKTPLRVLHRRANMNRPKEI---EITKIKKYQQYLRVTILSSAGAYIKEFITGDFG 284
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ S+LGC + ++L+V +V+
Sbjct: 285 RTTPSLASLLGCWCDCVELNVLEVE 309
>gi|148643421|ref|YP_001273934.1| putative pseudouridylate synthase [Methanobrevibacter smithii ATCC
35061]
gi|148552438|gb|ABQ87566.1| predicted pseudouridylate synthase [Methanobrevibacter smithii ATCC
35061]
Length = 401
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 24/253 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE-------------ERMGEASIEEIIGGNILPMCRG 360
P++ G+Y K R + QT+W + ++ GE S+EE++ IL G
Sbjct: 157 NPLFIEGKYNKLVRGIPQTKWPCGKCKGKGCEECNFTGKQYGE-SVEELLSEPILEATNG 215
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDV MLGSGRPF+ EI+ + ++ + +E KIN + NL
Sbjct: 216 WQAKFHGAGREDIDVLMLGSGRPFVLEIKEPK--IRKINLDALEEKINKMTEGKTSYHNL 273
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
K ++ ++ K Y ALV +P + ++++L E I Q+TP+RV
Sbjct: 274 KFCERNRKAEIKVSSSDAYKIYKALVKCDKPYDRDKLASLNNLDE------IHQQTPLRV 327
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
LHRR+ R K ++ + E I ++ F + + T+ G YIKE + GD RT P++G +LG
Sbjct: 328 LHRRADKVRIKHVHNVSCEIIDDTT--FEMTVKTEGGLYIKELISGDEDRTKPNVGEVLG 385
Query: 541 CRAEILQLDVTDV 553
++ QLDV +V
Sbjct: 386 VKSICEQLDVVEV 398
>gi|222445663|ref|ZP_03608178.1| hypothetical protein METSMIALI_01304 [Methanobrevibacter smithii
DSM 2375]
gi|222435228|gb|EEE42393.1| TIGR01213 family protein [Methanobrevibacter smithii DSM 2375]
Length = 404
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 130/252 (51%), Gaps = 22/252 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
P++ G+Y K R + QT+W + + S+EE++ IL G
Sbjct: 160 NPLFIEGKYNKLVRGIPQTKWPCGKCKGKGCEECNFTGKQYRESVEELLSEPILEATNGW 219
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDV MLGSGRPF+ EI+ + ++ + +E KIN + NLK
Sbjct: 220 QAKFHGAGREDIDVLMLGSGRPFVLEIKEPK--IRKINLDALEEKINKMTEGKTSYHNLK 277
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
++ ++ K Y ALV +P + ++++L E I Q+TP+RVL
Sbjct: 278 FCERNRKAEIKVSSSDAYKIYKALVKCDKPYDKDKLASLNNLDE------IHQQTPLRVL 331
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R K ++ + E I ++ F + + T+ G YIKE + GD RT P++G +LG
Sbjct: 332 HRRADKVRIKHVHNVSCEIIDDTT--FEMTVKTEGGLYIKELISGDEDRTKPNVGEVLGV 389
Query: 542 RAEILQLDVTDV 553
++ QLDV +V
Sbjct: 390 KSICEQLDVVEV 401
>gi|261349789|ref|ZP_05975206.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
gi|288860573|gb|EFC92871.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
Length = 404
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 130/252 (51%), Gaps = 22/252 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
P++ G+Y K R + QT+W + + S+EE++ IL G
Sbjct: 160 NPLFIEGKYNKLVRGIPQTKWPCGKCKGKGCEECNFTGKQYRESVEELLSEPILEATNGW 219
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDV MLGSGRPF+ EI+ + ++ + +E KIN + NLK
Sbjct: 220 QAKFHGAGREDIDVLMLGSGRPFVLEIKEPK--IRKINLDALEEKINKMTEGKTSYHNLK 277
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
++ ++ K Y ALV +P + ++++L E I Q+TP+RVL
Sbjct: 278 FCERNRKAEIKVSSSDAYKIYKALVKCDKPYDKDKLASLNNLDE------IHQQTPLRVL 331
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R K ++ + E I ++ F + + T+ G YIKE + GD RT P++G +LG
Sbjct: 332 HRRADKVRIKHVHNVSCEIIDDTT--FEMTVKTEGGLYIKELISGDEDRTKPNVGEVLGV 389
Query: 542 RAEILQLDVTDV 553
++ QLDV +V
Sbjct: 390 KSICEQLDVVEV 401
>gi|253748228|gb|EET02488.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC
50581]
Length = 577
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 142/280 (50%), Gaps = 46/280 (16%)
Query: 316 IYFGGRYLKYSRNVSQTRW----------IIDEERMGEASIE--EIIGGN--------IL 355
IY GRYLK+ R +SQT + I ++ G+ E E+ G + ++
Sbjct: 289 IYIAGRYLKHQRYISQTGYEAKAIRESSLITPAQKDGDNEGEDWEVYGFHPKISVSSLLI 348
Query: 356 PMC----RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINS-- 409
P D+ FHAAGREDIDVRM G+GRPF+ E+ N++ S V + +IN+
Sbjct: 349 PFFIAHGNSDNAVFHAAGREDIDVRMKGNGRPFIIELINSKNGLSRDWVS-LAKRINTDX 407
Query: 410 LENKLVRVKNLKIV-----GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLK 464
++ + + +V G + + G EK+K Y A+ W PL + S++
Sbjct: 408 YVSQFIHIHEDTLVAFEKNGRELIDKLASGSNEKRKNYRAVCWTETPLPTNAEEICCSIQ 467
Query: 465 ETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524
I Q TPIRVLHRR+ L+R K+I +K+ + S+ YF++ + QAGTYIKEF
Sbjct: 468 NL----SIEQMTPIRVLHRRTALKRTKLIYELKLVRHL-SAHYFVIDIFAQAGTYIKEFC 522
Query: 525 HGDLGRTNPSIGSILGCRA---------EILQLDVTDVKM 555
+ D GRT PS+ + + EILQLDV V M
Sbjct: 523 NSDFGRTRPSLSELFFGESSYGEKQPEMEILQLDVLAVDM 562
>gi|15679322|ref|NP_276439.1| pseudouridylate synthase [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2622428|gb|AAB85800.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 406
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 132/252 (52%), Gaps = 23/252 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QTRW + R M S+EE+I G IL +G
Sbjct: 158 NPLFLEGRYRKLVRGIPQTRWPCRKCRGRGCERCNYTGKMYPTSVEELIAGPILEASQGR 217
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
+FH +GRED+DVRMLG+GRPF+ EI+ R L + +E ++N +V V+ L+
Sbjct: 218 DARFHGSGREDVDVRMLGTGRPFVLEIREPR--VRNLDPESLEEEVNRRAQGMVEVEGLR 275
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ +++ + K Y ALV + + DED + + SL I Q+TP+RV
Sbjct: 276 FSTRKRKVELKDSSQSRYKVYRALVELDGDVTDEDLERLGSLD------IIKQRTPVRVS 329
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ RE+ + + + G + L + + G YIKE + GD GRT PS+ S+LG
Sbjct: 330 HRRADRVRERRVLEISWNLLDGCLE---LIIKGEGGLYIKELISGDSGRTEPSVSSVLGV 386
Query: 542 RAEILQLDVTDV 553
A + LDV +V
Sbjct: 387 PARCVALDVLEV 398
>gi|312137226|ref|YP_004004563.1| thump domain-containing protein [Methanothermus fervidus DSM 2088]
gi|311224945|gb|ADP77801.1| THUMP domain protein [Methanothermus fervidus DSM 2088]
Length = 401
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 127/252 (50%), Gaps = 24/252 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGD 361
P+Y GRY K R + QT+W + +M E S+EEII G ++ +
Sbjct: 160 NPLYLEGRYRKLVRGIPQTKWPCKHCRGKGCPKCNFKGKMYEESVEEIIAGPLIEATKAR 219
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDVRMLG GRPF+ E++ R +L + +I +IN V V LK
Sbjct: 220 ESKFHGAGREDIDVRMLGKGRPFVIELKEPRR--RKLDLDKIVDEINKSAEGKVEVLFLK 277
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
++ + K Y A+ I +++ED + I + + Q+TP+RV
Sbjct: 278 YTNRSRIVELK--SIKSYKVYRAIAEIEGKIKEEDLKKIEP------SFIVKQRTPLRVS 329
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ ++ +I I+ L + + G YIKE + GD GRT PSI +LG
Sbjct: 330 HRRA--DKVRIRKVYDIKPKILDENTIELKIKAEGGLYIKELISGDEGRTKPSITEMLGK 387
Query: 542 RAEILQLDVTDV 553
+A+ ++LDV D+
Sbjct: 388 QAKCIKLDVIDI 399
>gi|20095082|ref|NP_614929.1| pseudouridylate synthase [Methanopyrus kandleri AV19]
gi|74558834|sp|Q8TUV7.1|PUS10_METKA RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|19888364|gb|AAM02859.1| Predicted pseudouridylate synthase [Methanopyrus kandleri AV19]
Length = 436
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 133/251 (52%), Gaps = 21/251 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDS 362
PIY GRYLK R + QT+W R + S+EE+IG + +S
Sbjct: 185 PIYVRGRYLKLRRGIPQTKWPCPRCRGAGCPNCDFTGKLYTESVEELIGMVLKDAFLAES 244
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
+KFHAAGREDIDVRMLG+GRPF+ E+ + +L KEIE +IN V+V L+
Sbjct: 245 HKFHAAGREDIDVRMLGNGRPFVMELLYPKRRNVDL--KEIEGEINRKVGDDVQVVGLEY 302
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPL-QDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ +++ +K+Y A V +P+ +D+ + + L+ +V I Q+TP RVL
Sbjct: 303 GDPEDVGKVKDLSERSRKRYRAWVKFGKPVPEDKLREVLKGLERSV----IEQRTPRRVL 358
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R K ++ K+ + G ++ G Y+KE + GD GRT PS+ ++
Sbjct: 359 HRRADKVRRKRVHEAKLIEYDGDRA--VIEFLCDPGLYVKELISGDAGRTRPSLAELVEV 416
Query: 542 RAEILQLDVTD 552
AE +LDV +
Sbjct: 417 EAECERLDVIE 427
>gi|452207581|ref|YP_007487703.1| tRNA pseudouridine synthase Pus10 [Natronomonas moolapensis 8.8.11]
gi|452083681|emb|CCQ36995.1| tRNA pseudouridine synthase Pus10 [Natronomonas moolapensis 8.8.11]
Length = 422
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R + GRY K R++ QT W E+ E S+EE++ L RG FH AGRED
Sbjct: 162 RNSVSIYGRYRKLKRDIPQTEW----EKFDE-SVEELVAPPFLSAFRGTVAVFHGAGRED 216
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
+D MLGSGRPF+ EI+ R ++L E+ + +N + V ++ L V + R
Sbjct: 217 VDALMLGSGRPFVLEIKQPRRRDADL--TELRTAVNEGTDGTVEIEGLTRVTHD--MIER 272
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ K Y A + P+ DF+ ++L E + I Q+TP RV HRR+ L RE+
Sbjct: 273 VKGHDGSKTYRATIDFVEPVATADFE--AALDE-LEGATIEQRTPNRVDHRRADLVRERT 329
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ + +E + + + G YIKE V GD GRT PS+ +LG A + LDV D
Sbjct: 330 V--LDVEGSLTDEYTATVEVHGEGGLYIKELVSGDDGRTEPSLARLLGVGATVAALDVLD 387
Query: 553 VK 554
V+
Sbjct: 388 VE 389
>gi|336477205|ref|YP_004616346.1| THUMP domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335930586|gb|AEH61127.1| THUMP domain protein [Methanosalsum zhilinae DSM 4017]
Length = 415
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 21/252 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE---------ERMGE---ASIEEIIGGNILPMCRGDSY 363
+Y GRY K R + QTRW + E G+ S++E+I +++ R
Sbjct: 173 LYIYGRYRKLIRGIPQTRWPCRKCRGRGCESCEFTGKQYPVSVDELIREHVIEATRCAET 232
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
KFH AGREDID MLG+GRPF+ E + V E ++ +E+KIN + V+ LK
Sbjct: 233 KFHGAGREDIDALMLGNGRPFVVEAVDP--VFRETDLRLLENKINEKSGGKIEVEGLKFA 290
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
+ ++ +A+K Y V P+ +++ I ++ E + I Q+TP+RV+HR
Sbjct: 291 SKEVIESLKSSKADKV--YNLKVTFKEPVSEKNL--IYAV-EHLAGSDIKQQTPLRVVHR 345
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ + RE+ ++ M++E+I + Y ++ + G Y+KE + D GRT PS+ ILG +A
Sbjct: 346 RADIVRERHVHEMELEEI--NEDYAIIRVHCAGGLYVKELISSDDGRTVPSLSGILGVQA 403
Query: 544 EILQLDVTDVKM 555
E+ +LDV DVK+
Sbjct: 404 EVAELDVVDVKI 415
>gi|296109751|ref|YP_003616700.1| THUMP domain protein [methanocaldococcus infernus ME]
gi|295434565|gb|ADG13736.1| THUMP domain protein [Methanocaldococcus infernus ME]
Length = 421
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 133/252 (52%), Gaps = 23/252 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QTRW+ + S+EEIIG IL +G
Sbjct: 171 NPLFIKGRYRKLVRGIPQTRWLCGFCKGKGCVYCNFTGKKYLVSVEEIIGEPILKATKGK 230
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
Y+FH AGREDIDVRMLG+GRPF+ EI+ R + +K++E +IN ++ V V NL+
Sbjct: 231 DYRFHGAGREDIDVRMLGNGRPFVIEIKEPR--IRNINLKKLEEEIN--KDGRVEVLNLE 286
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ +++ +K Y ALV+ + +E+ + + + +I Q+TP RVL
Sbjct: 287 FCRRKDKVIIK--NVPHKKTYRALVYCEDEVSEEELKKLEEELKN---REIYQRTPKRVL 341
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + K+E +F L + G YIKE + GD GRT PS+ SIL
Sbjct: 342 HRRADLVRVRKV--YKVEANKVDRNHFELIIYCDGGLYIKELISGDEGRTKPSVSSILNK 399
Query: 542 RAEILQLDVTDV 553
+ +LDV V
Sbjct: 400 QCICKELDVIKV 411
>gi|448282225|ref|ZP_21473514.1| pseudouridylate synthase [Natrialba magadii ATCC 43099]
gi|445576859|gb|ELY31307.1| pseudouridylate synthase [Natrialba magadii ATCC 43099]
Length = 451
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 132/262 (50%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 179 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 238
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ RE + V +ES+IN
Sbjct: 239 HVVEAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPRERTPD--VAALESEINEAAE 296
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K Y A V S P++++DF+T +L+E +R +
Sbjct: 297 GAVEVEGLRLATYEMVERVKEHDA--SKHYRADVEFSDPVEEDDFET--ALEE-LRGTTV 351
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + E + +H + G YIKE + D GRT
Sbjct: 352 EQDTPQRVDHRRAALTRERTVYDTEGELREPTQAEVRIH--GEGGLYIKELISSDEGRTV 409
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L A + LDVT V+
Sbjct: 410 PSLAGLLETDAVVTALDVTGVE 431
>gi|289582355|ref|YP_003480821.1| hypothetical protein Nmag_2703 [Natrialba magadii ATCC 43099]
gi|289531908|gb|ADD06259.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
Length = 453
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 132/262 (50%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 181 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 240
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ RE + V +ES+IN
Sbjct: 241 HVVEAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPRERTPD--VAALESEINEAAE 298
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K Y A V S P++++DF+T +L+E +R +
Sbjct: 299 GAVEVEGLRLATYEMVERVKEHDA--SKHYRADVEFSDPVEEDDFET--ALEE-LRGTTV 353
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + E + +H + G YIKE + D GRT
Sbjct: 354 EQDTPQRVDHRRAALTRERTVYDTEGELREPTQAEVRIH--GEGGLYIKELISSDEGRTV 411
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L A + LDVT V+
Sbjct: 412 PSLAGLLETDAVVTALDVTGVE 433
>gi|156937136|ref|YP_001434932.1| pseudouridylate synthase [Ignicoccus hospitalis KIN4/I]
gi|156566120|gb|ABU81525.1| pseudouridylate synthase-like protein [Ignicoccus hospitalis
KIN4/I]
Length = 427
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 126/243 (51%), Gaps = 24/243 (9%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P++ G Y K +RNVSQ+ W S+E + + P G HA+GRED+D
Sbjct: 194 PVFIYGIYKKKARNVSQSEWKYP------YSVERAVRKALSPF--GGEVVLHASGREDVD 245
Query: 375 VRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
VR LG+GRPF+ E++ R +P E + E++LV ++ + V ++
Sbjct: 246 VRALGTGRPFVAEVKRPKRRRLPVEG---------SEYEDELVWLRFERYVNRDWVQRVK 296
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
E++K+K Y ALV++ + + D + + E V I Q+TP RVLHRR+ + RE+
Sbjct: 297 GDESKKEKVYLALVYVPEGVDEGDLRALEEFFEDV---TIKQRTPKRVLHRRADVVRERK 353
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ W+K K+ S F + Q G YIKE V GD GRT PS S LG A LDV
Sbjct: 354 VYWVKARKLNDKS--FEALIKAQGGLYIKELVSGDEGRTEPSFSSFLGKEATCASLDVVW 411
Query: 553 VKM 555
V +
Sbjct: 412 VSL 414
>gi|435850910|ref|YP_007312496.1| TIGR01213 family protein [Methanomethylovorans hollandica DSM
15978]
gi|433661540|gb|AGB48966.1| TIGR01213 family protein [Methanomethylovorans hollandica DSM
15978]
Length = 430
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 23/253 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRGDS 362
+Y GRY K R + QTRW R G+ S++E+I +++ +
Sbjct: 188 LYIQGRYNKLVRGIPQTRWPCRNCR-GKGCEICSFTGKQYPESVDELIKKDVIDAACAED 246
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID MLG+GRPF+ E + + + +KE++ INS + V V L+I
Sbjct: 247 TAFHGAGREDIDALMLGNGRPFVVEAISPK--VRTIALKELQEAINSHASGKVEVHGLQI 304
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + ++ A+K Y V + P+ E+ IS+L E++ +I Q+TP RV H
Sbjct: 305 VPKEMVEKLKSAHADKV--YNLKVTFTDPVSKEEL--ISAL-ESLSGAEIHQRTPQRVSH 359
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ L R++ ++ IE + + + +L + + G Y+KE V GD GRT PS+ ILG +
Sbjct: 360 RRADLTRKRYVH--VIELLGLEADHAMLRVRCEGGLYVKELVSGDEGRTLPSLTGILGKQ 417
Query: 543 AEILQLDVTDVKM 555
A++++LDV DV +
Sbjct: 418 AKVMELDVVDVDI 430
>gi|374855514|dbj|BAL58370.1| hypothetical conserved protein [uncultured candidate division OP1
bacterium]
Length = 438
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 134/252 (53%), Gaps = 21/252 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDS 362
P++ GRY K+ R + QT+W + R + S+EE+I +L RG
Sbjct: 166 PLFIYGRYKKFVRTIPQTKWPCRQCRGRGCPECNFTGKTYQESVEELISPPLLRETRGTG 225
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID MLG+GRPF+ EI+ + L +++++ +IN V V L+
Sbjct: 226 TAFHGAGREDIDALMLGTGRPFVIEIKEPKV--RTLDLEKLQREINQSAAGKVEVSELQF 283
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V +G + R E +K Y A V + P++ E FQ +LK + I Q+TP RV+H
Sbjct: 284 V--KGSVVERLKTIEAEKVYEARVRFAEPIKLEQFQ--KALKH-LNGATIEQRTPTRVVH 338
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ L R + + + E ++ + +H + G YIKE V GD GRT PS+ +L
Sbjct: 339 RRADLVRTRRVLEITGELLSPTEASIRVH--CEGGLYIKELVSGDGGRTRPSLSELLSTP 396
Query: 543 AEILQLDVTDVK 554
AE+ +L+V +V+
Sbjct: 397 AEVTELNVLEVR 408
>gi|304315443|ref|YP_003850590.1| pseudouridylate synthase [Methanothermobacter marburgensis str.
Marburg]
gi|332319811|sp|D9PYH9.1|PUS10_METTM RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|302588902|gb|ADL59277.1| predicted pseudouridylate synthase [Methanothermobacter
marburgensis str. Marburg]
Length = 402
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 31/256 (12%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + QT+W R M S+EE+I +L G
Sbjct: 158 NPIFIEGRYRKLVRGIPQTKWPCRSCRGRGCSRCDYTGKMYPTSVEELISEPVLEATGGS 217
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQN-AREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH +GRED+DVRMLG+GRPF+ EI+ A P ++ +E +IN +V V +L
Sbjct: 218 DSKFHGSGREDVDVRMLGTGRPFVLEIKEPAIRTPD---LRALEDEINRRARGMVEVADL 274
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ ++E +K K Y A+V + + DED + L I Q+TP+RV
Sbjct: 275 RFSSRNRKVELKESSRKKYKVYRAIVELEGAVSDEDLVKLEKLD------LIRQRTPLRV 328
Query: 481 LHRRSPLEREKI---INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
HRR+ RE+ I+W +++ + L + + G YIKE + GD GRT PS+ S
Sbjct: 329 SHRRADRIRERRVLEISWKRLD------DHLELIIKAEGGLYIKELISGDSGRTEPSVSS 382
Query: 538 ILGCRAEILQLDVTDV 553
ILG A LDV +V
Sbjct: 383 ILGVPARCASLDVLEV 398
>gi|432328302|ref|YP_007246446.1| TIGR01213 family protein [Aciduliprofundum sp. MAR08-339]
gi|432135011|gb|AGB04280.1| TIGR01213 family protein [Aciduliprofundum sp. MAR08-339]
Length = 382
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
PI GRY K R + QT+W + S+EEII I+ + G + H GREDID
Sbjct: 159 PILIYGRYRKLVRGIPQTKWPSGKYM---ESVEEIIAAPIMKITGGSGHALHGMGREDID 215
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
RMLG+GRPF+ EI+ R +L ++I+ +INS + V V +L+ + +
Sbjct: 216 ARMLGNGRPFIVEIKAPRRRRVDL--QKIQEEINS--SGKVEVMDLRFATKD--EIQKIK 269
Query: 435 EAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
AE +K+Y V I +ED + +SSL +I Q+TP RV HRR+ +R +I
Sbjct: 270 SAEPRKRYR--VGIRVDADEEDIRRALSSL-----VGKISQRTPTRVKHRRA--DRVRIR 320
Query: 494 NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+I+ + +++ + Q+GTYIKE +HGD GRT PS+ L R E+L LDV ++
Sbjct: 321 EVYEIKLVERKKDTWVVEVLAQSGTYIKELMHGDGGRTTPSLAEKLDKRVEVLWLDVIEI 380
>gi|66475764|ref|XP_627698.1| MJ0041-family pseudouridylate synthase; Zn finger +thump + Psusyn
[Cryptosporidium parvum Iowa II]
gi|32398932|emb|CAD98397.1| conserved hypothetical protein [Cryptosporidium parvum]
gi|46229127|gb|EAK89976.1| MJ0041-family pseudouridylate synthase; Zn finger +thump + Psusyn
[Cryptosporidium parvum Iowa II]
Length = 539
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 82/315 (26%)
Query: 316 IYFGGRYLKYSRNVSQTRWII---DEERMG-EASIEEIIGGNILPMCRGDSYKFHAAGRE 371
+Y GRY+K+SR +SQ++W D+ ++ + SIEEI+ ++ + + + F ++GRE
Sbjct: 229 VYLLGRYIKFSRRISQSKWGFSDGDKNKITVDTSIEEILINSLKELINFEKFTFSSSGRE 288
Query: 372 DIDVRMLG---------------------------------------SGRPFLFEI---- 388
D+DVRMLG +GRPF EI
Sbjct: 289 DVDVRMLGNYANTLFDRDLNLNEDRNYDQSRNNCLSTEVKIKQSITPAGRPFAIEIGNIL 348
Query: 389 -----------------QNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
+N++ E ++ ++ I N + + L S M
Sbjct: 349 THHYLFYPKNIQVMDLKENSKYFSRENFIQLLKDTIIQKSNSRIEISALNFSDSYSVQKM 408
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTIS-SLKETVRCYQILQKTPIRVLHRRSPLERE 490
+ ++QK Y + +IS P+ ++ IS LK + + Q+TP+RVLHRR + R+
Sbjct: 409 NKEVNDRQKSYRCICYISTPIYIHEYHEISEKLKFPI---TLNQRTPVRVLHRRPNINRD 465
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL------GCRAE 544
+ I + I I + YF+L + QAGTYIKEFV+GDLGRT+PS+G ++ C E
Sbjct: 466 RKIYDLMISPI--NDNYFILDLLAQAGTYIKEFVNGDLGRTSPSLGDLIQESLPGKCNNE 523
Query: 545 ------ILQLDVTDV 553
I+QLDV ++
Sbjct: 524 EKLNVIIVQLDVLNI 538
>gi|147919491|ref|YP_686769.1| putative pseudouridylate synthase [Methanocella arvoryzae MRE50]
gi|110622165|emb|CAJ37443.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 440
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 141/274 (51%), Gaps = 29/274 (10%)
Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGE 343
F L +E +L+ ++ GRY KY R++ QTRW E +M
Sbjct: 169 FTLHLADETVKLQV----QSLFIYGRYNKYVRDIPQTRWPCRECGGKGCERCKNTGKMYT 224
Query: 344 ASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEI 403
S+EE+I ++ + H AGREDID M+G GRPF+ E+ + +L +
Sbjct: 225 NSVEELISHKVIEAFKAHDGVLHGAGREDIDAIMVGDGRPFVMEVMDPHVRHVDLAA--L 282
Query: 404 ESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
+ +IN+ V+V +L VG ++ + K V+ + + +ED +I +L
Sbjct: 283 KEQINAYAEPKVKVSDLVYVGKNAVEEVKSLKVNK-------VYRLKVIYNEDI-SIETL 334
Query: 464 KETVRCY---QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYI 520
K ++ +ILQ+TP RV HRR+ LER + + + + ++ +YF++ + + G Y+
Sbjct: 335 KSSIAALSNSEILQRTPERVAHRRADLERIRHVYGIDLVELNAEEKYFVITVRCEGGLYV 394
Query: 521 KEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
KE V GD GRT PS+ ++LG ++ +LDVT V+
Sbjct: 395 KELVSGDNGRTRPSLSALLGIPVKVQELDVTKVE 428
>gi|16082288|ref|NP_394751.1| pseudouridylate synthase [Thermoplasma acidophilum DSM 1728]
gi|74543374|sp|Q9HIN9.1|PUS10_THEAC RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|10640640|emb|CAC12418.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 389
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 19/241 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
IY G+Y K+ R++ QTRWI R ++E +IG G +Y H +GRED+DV
Sbjct: 160 IYIYGKYRKFRRDMPQTRWI---HRPNGDTVESVIGSVFTRYAGGTNYYLHGSGREDVDV 216
Query: 376 RMLGSGRPFLFEIQNAREVPSEL--LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
RMLG+GR F+ E++N R EL +VKEI + K V + ++K + E
Sbjct: 217 RMLGNGREFVLEVENPRYREFELDPVVKEINTS-----GKGVEIFDVKFSSHDA---VSE 268
Query: 434 GEAEKQKQ-YAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ EK ++ Y ALV RP+ DE + + T + I Q+TP+RV RRS L R +
Sbjct: 269 VKLEKHRKVYDALVVSDRPI-DESRLLEACINLTGK--NIYQRTPLRVAQRRSDLVRTRR 325
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I+ + + ++ + L+ +AGTYIKE V+GD GRT PS+ + G + +LDV
Sbjct: 326 IDQVDLVGVSANEAEILI--SAEAGTYIKELVNGDGGRTRPSLSEMYGSPLNVKELDVIK 383
Query: 553 V 553
+
Sbjct: 384 I 384
>gi|429191024|ref|YP_007176702.1| hypothetical protein Natgr_1022 [Natronobacterium gregoryi SP2]
gi|448327410|ref|ZP_21516738.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|429135242|gb|AFZ72253.1| TIGR01213 family protein [Natronobacterium gregoryi SP2]
gi|445608508|gb|ELY62347.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
Length = 449
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 32/262 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+ +
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYETSVEQAVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + E+E +IN + +
Sbjct: 238 HVVEAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVK--RPQTRDPDPAELEREINEVAD 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + + R E + KQY A V + P+ ++ F+ + E + +
Sbjct: 296 G-VEVEGLRLASYE--MVERVKEHDASKQYRADVELDDPIDEDAFE---AAIEELDGATL 349
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q+TP RV HRR+ L RE+ + ++ E + + LH + G Y+KEFV D GRT
Sbjct: 350 AQETPERVDHRRASLTRERTVYDLEGELRSPTEAEVRLH--GEGGLYVKEFVSSDDGRTK 407
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +LG AE+ LDVT V+
Sbjct: 408 PSLAGVLGTEAEVTALDVTGVE 429
>gi|254167283|ref|ZP_04874135.1| conserved hypothetical protein TIGR01213 [Aciduliprofundum boonei
T469]
gi|197623546|gb|EDY36109.1| conserved hypothetical protein TIGR01213 [Aciduliprofundum boonei
T469]
Length = 383
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 17/239 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+ GRY K R + QT+W + + S+EEII I+ + +G+ + H GREDID
Sbjct: 159 PLLIYGRYRKLVRGIPQTKWPSGKYK---ESVEEIIAKPIMEVTKGEGHALHGMGREDID 215
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
MLG+GRPF+ EI+ + ++ + EI KIN L K V V +L+ + ++
Sbjct: 216 ALMLGNGRPFIIEIKMPKR--RKINLDEIAKKIN-LSGK-VEVLDLRFASKKEIVQIKSS 271
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
E +K+ + V D + + S +++ +I Q+TPIRV HRR+ R K +
Sbjct: 272 EPKKRYRVGIKV-------DASAEELKSALDSL-IGKISQRTPIRVKHRRADKVRIKEVY 323
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+K+ I + +++ + Q+GTYIKE +HGD GRT+PS+ LG + E+L LDV ++
Sbjct: 324 EVKL--IGKDDEAWVVEVLAQSGTYIKELMHGDNGRTSPSLAEKLGKKVEVLWLDVIEI 380
>gi|333910537|ref|YP_004484270.1| hypothetical protein [Methanotorris igneus Kol 5]
gi|333751126|gb|AEF96205.1| Conserved hypothetical protein CHP01213 [Methanotorris igneus Kol
5]
Length = 437
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 131/252 (51%), Gaps = 23/252 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QT W + S+EEII + +G
Sbjct: 191 NPLFIKGRYRKLVRGIPQTHWHCRFCRGKGCEKCNFTGKRYPTSVEEIIAEPFMKATKGT 250
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
+ KFH AGREDIDVRMLG+GRPF+ EI+ + ++ + +I ++N ++ +V V NL+
Sbjct: 251 NEKFHGAGREDIDVRMLGNGRPFVLEIKEPK--IRKIDLNKIAEEVN--KSGMVEVLNLE 306
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
G++ + + E K K Y ALV + DED I + ET I Q+TP RVL
Sbjct: 307 -YGNRKDVVFFKNEPHK-KTYRALVECEEKITDED---IEKVIETCENLTIYQRTPKRVL 361
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + + KI +F + + G YIKE + GD GRT+PSI IL
Sbjct: 362 HRRADLTRIRKVYKVWAHKI--DDNHFEMKIFCDGGLYIKELISGDDGRTSPSISEILNK 419
Query: 542 RAEILQLDVTDV 553
+ +LDV +V
Sbjct: 420 KCICKELDVLEV 431
>gi|67599032|ref|XP_666258.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657217|gb|EAL36027.1| hypothetical protein Chro.60411 [Cryptosporidium hominis]
Length = 539
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 82/315 (26%)
Query: 316 IYFGGRYLKYSRNVSQTRWII---DEERMG-EASIEEIIGGNILPMCRGDSYKFHAAGRE 371
+Y GRY+K+SR +SQ++W D+ ++ + SIEEI+ ++ + + F ++GRE
Sbjct: 229 VYLLGRYIKFSRRISQSKWGFSDGDKNKITVDTSIEEILINSLKELINFGKFTFSSSGRE 288
Query: 372 DIDVRMLG---------------------------------------SGRPFLFEI---- 388
D+DVRMLG +GRPF EI
Sbjct: 289 DVDVRMLGKYANTLFDRDLNLNEDQNYDQSRNNYLSTEVKIKQSITPTGRPFAIEIGNIL 348
Query: 389 -----------------QNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
+N++ E ++ ++ I N + + L S M
Sbjct: 349 SHHYLFYPKNIQVMDLKENSKYFSRENFIQLLKDTIIQKSNSRIEISALNFSDSYSVQKM 408
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISS-LKETVRCYQILQKTPIRVLHRRSPLERE 490
+ ++QK Y + +IS P+ ++ IS LK + + Q+TP+RVLHRR + R+
Sbjct: 409 NKEVNDRQKSYRCICYISTPIYIHEYHEISDKLKFPI---NLNQRTPVRVLHRRPNINRD 465
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL------GCRAE 544
+ I + I I + YF+L + QAGTYIKEFV+GDLGRT+PS+G ++ C E
Sbjct: 466 RKIYDLMISPI--NENYFILDLLAQAGTYIKEFVNGDLGRTSPSLGDLIQESLPGKCNNE 523
Query: 545 ------ILQLDVTDV 553
I+QLDV ++
Sbjct: 524 EKLNVIIVQLDVLNI 538
>gi|282163392|ref|YP_003355777.1| hypothetical protein MCP_0722 [Methanocella paludicola SANAE]
gi|282155706|dbj|BAI60794.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 458
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 134/257 (52%), Gaps = 25/257 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE----ERMGEA--------------SIEEIIGGNILPM 357
++ GRY KY R++ QTRW E + GEA S+EE I ++
Sbjct: 187 LFIYGRYNKYVRDIPQTRWPCRECGGKGKKGEAECEHCKGTGKMYPTSVEEQINHEVIDE 246
Query: 358 CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRV 417
+ H AGREDID RMLG GRPF+ E+ N R +L + +IN+ ++ V V
Sbjct: 247 FKAGDAILHGAGREDIDGRMLGDGRPFVMEVINPRVRWVDL--DALRERINAYASEKVAV 304
Query: 418 KNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
L V ++ + +K + + D +T+ S T+ ILQ+TP
Sbjct: 305 SGLHYVDKDSVEQVKSIKPDKTYRLKVIY-----NDDISIETLKSSLATLSNSTILQRTP 359
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
+RV HRR+ LER++ ++ + + ++ + +YF + + + G Y+KE V GD GRT+PS+ +
Sbjct: 360 VRVSHRRADLERKRKVHSITLGELNEADKYFTITVRCEGGLYVKELVSGDNGRTSPSLSA 419
Query: 538 ILGCRAEILQLDVTDVK 554
+L +A + +LDV +V+
Sbjct: 420 LLNRQARVTELDVMNVE 436
>gi|328908821|gb|AEB61078.1| putative tRNA pseudouridine synthase pus10-like protein [Equus
caballus]
Length = 152
Score = 127 bits (319), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
Query: 406 KINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKE 465
KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D ++ +K+
Sbjct: 2 KINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIDFLNDVKD 60
Query: 466 TVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVH 525
+I QKTP+RVLHRR R +II+ M+ + +F L++ TQAGTYIKEFVH
Sbjct: 61 ----LKIDQKTPLRVLHRRPLAVRTRIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVH 114
Query: 526 GDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
GD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 115 GDFGRTKPNIGSLMNVTADILELDVESVDVD 145
>gi|21228637|ref|NP_634559.1| pseudouridylate synthase [Methanosarcina mazei Go1]
gi|20907136|gb|AAM32231.1| Conserved hypothetical protein [Methanosarcina mazei Go1]
Length = 431
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 20/252 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------ERMG------EASIEEIIGGNILPMCRGDSY 363
+Y GRYLK R + QTRW + E+ G S++E+I G ++
Sbjct: 188 VYIYGRYLKKVRGIPQTRWPCRKCRGKGCEKCGFTGKQYPESVDELIKGPVVEAFEAVDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH +GREDID MLGSGRPF+ E ++ + ++L + + +KIN V V++L+ V
Sbjct: 248 AFHGSGREDIDALMLGSGRPFVVEAKSPVKRSADL--EALAAKINENAAGKVEVRDLRFV 305
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ +A+ K Y V P+ +E + S E++ +I Q+TP RV+HR
Sbjct: 306 EKGMIETLKSSKAD--KTYKLKVTFKEPVSEEKLK---SCLESLNGTEIAQQTPKRVVHR 360
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ + + ++ ++ C + G Y+KE + GD GRTNPS+ +LG A
Sbjct: 361 RADLIRKRYVHSITLNELTDDGYAYITVNC-EGGLYVKELISGDEGRTNPSLTGLLGIPA 419
Query: 544 EILQLDVTDVKM 555
+ LDV +V++
Sbjct: 420 LVEDLDVVNVEI 431
>gi|452211049|ref|YP_007491163.1| tRNA pseudouridine 55 synthase Archaea [Methanosarcina mazei Tuc01]
gi|452100951|gb|AGF97891.1| tRNA pseudouridine 55 synthase Archaea [Methanosarcina mazei Tuc01]
Length = 376
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 20/252 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------ERMG------EASIEEIIGGNILPMCRGDSY 363
+Y GRYLK R + QTRW + E+ G S++E+I G ++
Sbjct: 133 VYIYGRYLKKVRGIPQTRWPCRKCRGKGCEKCGFTGKQYPESVDELIKGPVVEAFEAVDT 192
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH +GREDID MLGSGRPF+ E ++ + ++L + + +KIN V V++L+ V
Sbjct: 193 AFHGSGREDIDALMLGSGRPFVVEAKSPVKRSADL--EALAAKINENAAGKVEVRDLRFV 250
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ +A+ K Y V P+ +E + S E++ +I Q+TP RV+HR
Sbjct: 251 EKGMIETLKSSKAD--KTYKLKVTFKEPVSEEKLK---SCLESLNGTEIAQQTPKRVVHR 305
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ + + ++ ++ C + G Y+KE + GD GRTNPS+ +LG A
Sbjct: 306 RADLIRKRYVHSITLNELTDDGYAYITVNC-EGGLYVKELISGDEGRTNPSLTGLLGIPA 364
Query: 544 EILQLDVTDVKM 555
+ LDV +V++
Sbjct: 365 LVEDLDVVNVEI 376
>gi|261403654|ref|YP_003247878.1| putative pseudouridylate synthase [Methanocaldococcus vulcanius M7]
gi|261370647|gb|ACX73396.1| THUMP domain protein [Methanocaldococcus vulcanius M7]
Length = 443
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 128/254 (50%), Gaps = 27/254 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER---------MGE---ASIEEIIGGNILPMCRGD 361
P++ GRY K R + QTRW+ + R G+ S+EEII L G
Sbjct: 193 NPLFIKGRYRKLVRGIPQTRWLCRKCRGKGCEICNYTGKKYPTSVEEIIAKPFLEATGGI 252
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKN 419
KFH AGREDIDVRMLG GRPF+ EI+ R++ E + KEI ++ V V N
Sbjct: 253 DEKFHGAGREDIDVRMLGDGRPFVLEIKEPKIRKIDLEKIAKEIN------KDGRVEVLN 306
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
L+ + + +K Y ALV S + DE+ + + E Y QKTP R
Sbjct: 307 LEFGVRKDKVFFK--NTPHRKTYWALVECSEKISDEELKLLEKELENRTIY---QKTPKR 361
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
VLHRR+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 362 VLHRRADLERIRKVYKVKTSKV--DDTHFEMIIYCDGGLYIKELISGDDGRTNPSVSSIL 419
Query: 540 GCRAEILQLDVTDV 553
+LDV +
Sbjct: 420 NKNCICKELDVLKI 433
>gi|20090306|ref|NP_616381.1| putative pseudouridylate synthase [Methanosarcina acetivorans C2A]
gi|19915306|gb|AAM04861.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 431
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 134/252 (53%), Gaps = 20/252 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------ERMG------EASIEEIIGGNILPMCRGDSY 363
+Y GRYLK R + QTRW + E G + S++E+I G ++
Sbjct: 188 VYVYGRYLKKVRGIPQTRWPCRKCKGKGCESCGFTGKQYQESVDELIKGPVVEAFEAIDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH +GREDID MLGSGRPF+ E + ++L + + ++IN V VK+L V
Sbjct: 248 AFHGSGREDIDALMLGSGRPFVVEAKAPVRRSTDL--EALAARINESAAGKVEVKDLHFV 305
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ +A+ K Y V P+ +E + S E++ +I Q+TP RV+HR
Sbjct: 306 EKGMIETLKSSKAD--KTYKLKVTFKEPVSEEKLK---SCLESLSGKEIAQQTPKRVVHR 360
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ + ++++ ++ C + G Y+KE + GD GRTNPS+ +LG +A
Sbjct: 361 RADLVRKRYVHSITLDELKDDENAYITVNC-EGGLYVKELISGDEGRTNPSLTGLLGYQA 419
Query: 544 EILQLDVTDVKM 555
+ LDV +V++
Sbjct: 420 LVEDLDVVNVEI 431
>gi|284161823|ref|YP_003400446.1| pseudouridylate synthase-like protein [Archaeoglobus profundus DSM
5631]
gi|284011820|gb|ADB57773.1| pseudouridylate synthase-like protein [Archaeoglobus profundus DSM
5631]
Length = 364
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 22/253 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWII-----------DEERMGEASIEEIIGGNILPMCRGDS 362
P+Y GRY K R +SQTRWI + S+EE+I I G
Sbjct: 119 APLYIYGRYKKRVRGLSQTRWICRFCNGKGCEVCNWTGKRYLSVEELITEPIREFVGGKH 178
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H AGRED+D RMLG+GRPF+ EIQ+ + +L KE+E +N V V +LK
Sbjct: 179 AILHGAGREDVDARMLGNGRPFIVEIQDPKRRKIDL--KELEKIVNEFCRGKVVVSDLKF 236
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRVL 481
++ ++ A K Y A V + + E+ + + LKE I Q+TP+RVL
Sbjct: 237 AKAKDVEFIK--SAGFVKVYRAKVVFEKEVSREELEKAVEKLKEQ----PIHQRTPLRVL 290
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + E I + ++ + ++G YIKE V GD GRT PS+ +LG
Sbjct: 291 HRRADLVRVRRV--YDAEIILHRGKVAVIKIVAESGLYIKELVSGDQGRTKPSLSELLGV 348
Query: 542 RAEILQLDVTDVK 554
+ +LDV +V+
Sbjct: 349 NCWVEKLDVIEVR 361
>gi|15668211|ref|NP_247004.1| putative pseudouridylate synthase [Methanocaldococcus jannaschii
DSM 2661]
gi|2495757|sp|Q60346.1|PUS10_METJA RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|1498801|gb|AAB98022.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 454
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRG 360
P++ GRY K R + QTRW + R G+ S+EEII L +G
Sbjct: 205 NPLFIKGRYRKLVRGIPQTRWPCRKCR-GKGCELCNYTGKKYPISVEEIIAKPFLEATKG 263
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDVRMLG GRPF+ EI+ + ++ + +I +IN ++ V V NL
Sbjct: 264 VDAKFHGAGREDIDVRMLGDGRPFVLEIKEPK--IRKIDLNKIAEEIN--KDGRVEVLNL 319
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ + + + +K Y ALV S + DE+ + + E Y QKTP RV
Sbjct: 320 EFGVRKDKVIFK--NTPHRKTYRALVECSDKITDEELKLLEKELENRTIY---QKTPKRV 374
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
LHRR+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 375 LHRRADLERIRKVYKVKTSKV--DDNHFEMIIYCDGGLYIKELISGDDGRTNPSVSSILN 432
Query: 541 CRAEILQLDVTDVKMNCFL 559
+LDV + N L
Sbjct: 433 KNCICKELDVLKIHDNNLL 451
>gi|448713208|ref|ZP_21701907.1| pseudouridylate synthase [Halobiforma nitratireducens JCM 10879]
gi|445789544|gb|EMA40224.1| pseudouridylate synthase [Halobiforma nitratireducens JCM 10879]
Length = 450
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 38/265 (14%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+ +
Sbjct: 180 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQTVRP 239
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSL 410
+++ GD FH AGRED+D RML GRPF+ E++ RE E L +EI + + +
Sbjct: 240 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPTIREPDVEALEREINATADGV 299
Query: 411 ENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRC 469
E + +R+ ++V R E + KQY A V + P+ ++DF+T ++ L T
Sbjct: 300 EVEGLRLATYEMV-------ERVKEHDASKQYRADVEFTDPIDEDDFETALAELSGTT-- 350
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q+TP RV HRR+ L RE+ + + + + ++ +H + G Y+KE + D G
Sbjct: 351 --VEQETPQRVDHRRANLTRERTVYEIDGDLESPTAAEVRIH--GEGGLYVKELISSDDG 406
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +L AE+ LDVT V+
Sbjct: 407 RTEPSLAGLLETGAEVTALDVTAVE 431
>gi|7509998|pir||T31596 hypothetical protein Y48C3A.n - Caenorhabditis elegans
Length = 513
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 13/199 (6%)
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE----NKLVRVKN 419
+F +GREDIDVRMLG+GRPF+ E++N R +K +E+ E K V+V +
Sbjct: 287 RFVTSGREDIDVRMLGTGRPFVVELRNCRTTAPVRGIKYLETLKTVQEAINVQKDVKVVS 346
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
L V + GE +K+KQY A + P+ D F S +I+QKTP+R
Sbjct: 347 LTRVPRDVSEKLCVGEEDKRKQYCAYCYSILPISDSQFTAAQSKIPL----KIVQKTPVR 402
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
V+ RR+ L+RE+ I M K+ +F + + TQAGTYIKEFVHGD GRT PS+ +L
Sbjct: 403 VMKRRALLDRERWIYSMNFLKL--DDHHFEVRLETQAGTYIKEFVHGDFGRTRPSLAELL 460
Query: 540 GC---RAEILQLDVTDVKM 555
+IL+LDV V +
Sbjct: 461 DVEHGEVDILELDVEKVDL 479
>gi|325957953|ref|YP_004289419.1| hypothetical protein Metbo_0195 [Methanobacterium sp. AL-21]
gi|325329385|gb|ADZ08447.1| Conserved hypothetical protein CHP01213 [Methanobacterium sp.
AL-21]
Length = 407
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 128/259 (49%), Gaps = 32/259 (12%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
PI+ +Y K R++ QT+W + +M ++EE+I ++ +G
Sbjct: 164 NPIFIESKYRKLVRDIPQTKWPCNRCKGRGCEKCNFTGKMYPVTVEELISDVMIKAAKGT 223
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGREDIDVRMLGSGR F+ EI + EL ++ ++ ++N+ V + +K
Sbjct: 224 GAKFHGAGREDIDVRMLGSGRTFVLEILEPK--IRELDLETLQEEVNNYAESKVEISEMK 281
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
V +++ + K Y ALV + + ++ SL I Q+TPIRV
Sbjct: 282 YVPRNRKAEIKQSSTDTYKVYKALVEVDDEIDPTALDSLKSLD------IINQRTPIRVS 335
Query: 482 HRRSPLEREKII-----NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIG 536
HRR+ R + I NW++ + F + + + G YIKE + GD R+ PS+
Sbjct: 336 HRRADKIRTRKIRKLDYNWLE-------PKIFEITLECEGGLYIKELISGDENRSKPSVA 388
Query: 537 SILGCRAEILQLDVTDVKM 555
+LG A +QLDV +V +
Sbjct: 389 EVLGTNARCVQLDVLEVNI 407
>gi|432330523|ref|YP_007248666.1| TIGR01213 family protein [Methanoregula formicicum SMSP]
gi|432137232|gb|AGB02159.1| TIGR01213 family protein [Methanoregula formicicum SMSP]
Length = 410
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEA------------SIEEIIGGNILPMCRGDSY 363
++F GRY K+ R + QT W + S+EE+IG ++ M ++
Sbjct: 163 VFFYGRYQKFERGIPQTHWDCRACKGAGCEKCNFTGAQYLDSVEELIGRPVIEMFNAENA 222
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H AGREDID RM+G+GRPF+ E+ + R+ +L E+E INS + V +
Sbjct: 223 ILHGAGREDIDARMVGTGRPFILEVVSPRKRSIDL--AELEKTINSTAGGRISVAIRRWA 280
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ +A K+Y LV + + ++F E V Y Q+TP RV HR
Sbjct: 281 DRAEVETLKSNKA--HKKYRILVEVDGEIAADEFAKAVKTLEGVTIY---QRTPERVAHR 335
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ RE+ + + IE + F++ + +AG YIKE V GD GRT PS+ IL A
Sbjct: 336 RADKVRERTV--LGIECVGEQDGKFIVEVLGEAGLYIKELVSGDSGRTRPSLAEILKRSA 393
Query: 544 EILQLDVTDVK 554
+ LDVT V+
Sbjct: 394 RVTSLDVTQVE 404
>gi|448355150|ref|ZP_21543903.1| pseudouridylate synthase [Natrialba hulunbeirensis JCM 10989]
gi|445635915|gb|ELY89080.1| pseudouridylate synthase [Natrialba hulunbeirensis JCM 10989]
Length = 451
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 179 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 238
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ RE + V +ES+IN
Sbjct: 239 HVVEAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPRERTPD--VAALESEINEAAA 296
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + + R E + K Y A V P+++ DF+ ++L+E +R +
Sbjct: 297 GAVEVEGLRLATYE--MVERVKEHDASKHYRADVEFGEPVEEGDFE--AALEE-LRGTTV 351
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q+TP RV HRR+ L RE+ + + E + +H + G YIKE + D GRT
Sbjct: 352 EQETPQRVDHRRAALTRERTVYDAEGELREPTQAEVRIH--GEGGLYIKELISSDEGRTV 409
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L A + LDVT V+
Sbjct: 410 PSLAGLLETDAVVTALDVTGVE 431
>gi|448299118|ref|ZP_21489131.1| pseudouridylate synthase [Natronorubrum tibetense GA33]
gi|445588652|gb|ELY42894.1| pseudouridylate synthase [Natronorubrum tibetense GA33]
Length = 457
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 37/265 (13%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE--------ERMGE--------------ASIEEIIGG 352
P + GRY K R++ QT W E GE S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLADTGEEPCDYCGGSGYLYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQ--NAREVPSELLVKEI-ESKINS 409
+++ GD FH AGRED+D RML GRPF+ E++ + REV E L +EI E+ S
Sbjct: 238 HVVEAMDGDEGTFHGAGREDVDARMLEDGRPFVLEVKRPSTREVDVESLEREINEAAAGS 297
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
+E +R+ +V R E + KQY A V + P+++ DF+ ++L+E
Sbjct: 298 VEVDGLRLATYDMV-------ERVKEHDASKQYRADVEFADPVEEGDFE--AALEELTGA 348
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q TP RV HRR+ L RE+ + M E + + +H + G Y+KE V D G
Sbjct: 349 -TVEQDTPQRVDHRRAALTRERTVYEMDGELLEPTQAEVRIH--GEGGLYVKELVSSDDG 405
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +L AE+ LDV V+
Sbjct: 406 RTVPSLAGVLETDAEVTALDVLSVE 430
>gi|254166754|ref|ZP_04873608.1| conserved hypothetical protein TIGR01213 [Aciduliprofundum boonei
T469]
gi|289596320|ref|YP_003483016.1| THUMP domain protein [Aciduliprofundum boonei T469]
gi|197624364|gb|EDY36925.1| conserved hypothetical protein TIGR01213 [Aciduliprofundum boonei
T469]
gi|289534107|gb|ADD08454.1| THUMP domain protein [Aciduliprofundum boonei T469]
Length = 383
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 17/239 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+ GRY K R + QT+W + + S+EEII I+ + +G+ + H GREDID
Sbjct: 159 PLLIYGRYRKLVRGIPQTKWPSGKYK---ESVEEIIAKPIMEVTKGEGHALHGMGREDID 215
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
MLG+GRPF+ EI+ + ++ + EI KIN L K V V +L+ + ++
Sbjct: 216 ALMLGNGRPFIIEIKMPKR--RKINLDEIAKKIN-LSGK-VEVLDLRFASKKEIVQIKSS 271
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
E +K+ + V D + + S +++ +I Q+TP RV HRR+ R K +
Sbjct: 272 EPKKRYRVGIKV-------DASAEELKSALDSL-IGKISQRTPTRVKHRRADKVRIKEVY 323
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+K+ I ++ +++ + Q+GTYIKE +HGD GRT+PS+ LG + E+L LDV ++
Sbjct: 324 EVKL--IGKDNEAWVVEVLAQSGTYIKELMHGDNGRTSPSLAEKLGKKLEVLWLDVIEI 380
>gi|289192414|ref|YP_003458355.1| THUMP domain protein [Methanocaldococcus sp. FS406-22]
gi|288938864|gb|ADC69619.1| THUMP domain protein [Methanocaldococcus sp. FS406-22]
Length = 441
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 131/256 (51%), Gaps = 25/256 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRG 360
P++ GRY K R + QTRW + R G+ S+EEII L +G
Sbjct: 189 NPLFIKGRYRKLVRGIPQTRWPCRKCR-GKGCELCNYTGKKYPISVEEIIAKPFLEATKG 247
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDVRMLG GRPF+ EI+ + ++ + +I ++N ++ V V NL
Sbjct: 248 VDAKFHGAGREDIDVRMLGDGRPFVLEIKEPK--IRKIDLNKIAEEVN--KDGRVEVLNL 303
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ + + + +K Y ALV S + DE+ + + E Y QKTP RV
Sbjct: 304 EFGVRKDKVIFK--NTPHRKTYRALVECSDKITDEELKLLEKELENRTIY---QKTPKRV 358
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
LHRR+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 359 LHRRADLERIRKVYKVKTSKV--DDNHFEMIIYCDGGLYIKELISGDDGRTNPSVSSILN 416
Query: 541 CRAEILQLDVTDVKMN 556
+LDV + N
Sbjct: 417 KNCICKELDVLKIHDN 432
>gi|123509566|ref|XP_001329887.1| MGC83083 protein [Trichomonas vaginalis G3]
gi|121912937|gb|EAY17752.1| MGC83083 protein, putative [Trichomonas vaginalis G3]
Length = 395
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 304 PCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
P ++C ++ GRY K SR VS +R+ + S+E + + +
Sbjct: 147 PTDIQCKLKWPDLFITGRYFKKSRRVSNSRFF---KGNSITSVETELIKEFSKYVKCSQF 203
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
F ++GRED DVRM+GSGRPF ++++ + E +N+L K + +N
Sbjct: 204 TFASSGREDADVRMIGSGRPFALKMKDPVPPHPPKDIDEYVESVNALIPKDIECENCVAA 263
Query: 424 GSQGWTLMREG-EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
+ L + E + K+Y ++V +RP+ DE+ Q I L+ V + Q+TP+RV
Sbjct: 264 ANCHVVLQQPSMEPKHMKRYRSVVTFTRPVSDEELQRIEGLENIV----LHQRTPLRVAQ 319
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG-- 540
++ +RE+ I + ++I S ++ LL + T GTYIKEFV+ D GRT PS+G +L
Sbjct: 320 KKEIQDRERTIMKLGYQRI--SPRFILLDLETSKGTYIKEFVNSDFGRTVPSLGQLLNPD 377
Query: 541 --CRAEILQLDVTDV 553
+ ++LQLDV V
Sbjct: 378 DPPQCQLLQLDVVYV 392
>gi|73670677|ref|YP_306692.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
gi|72397839|gb|AAZ72112.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 431
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 20/252 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSY 363
+Y GRY K R + QTRW + + + S++E+I G ++ +
Sbjct: 188 VYILGRYRKLIRGIPQTRWPCRKCKGKGCESCNFTGKQYQESVDELIKGPVVEAFQAVDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH +GREDID MLGSGRPF+ E ++ + ++L +E+ IN V V+
Sbjct: 248 AFHGSGREDIDALMLGSGRPFVVEAKSPVKRSTDL--EELMRNINEKAAGKVEVREFSFT 305
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
G ++ +A+ K Y V P+ +E + SSL E + +I Q+TP RV+HR
Sbjct: 306 GKDMIETLKSSKAD--KTYKLKVTFKEPVSEEKLK--SSL-EALNGIEISQQTPRRVVHR 360
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ +K++++ ++ C + G Y+KE V GD GRTNP++ +LG A
Sbjct: 361 RADLVRKRHVHSIKLDELTDEGYAYITVNC-EGGLYVKELVSGDEGRTNPNLSGLLGIPA 419
Query: 544 EILQLDVTDVKM 555
+ LDV +V +
Sbjct: 420 LVEDLDVVNVDI 431
>gi|260836297|ref|XP_002613142.1| hypothetical protein BRAFLDRAFT_210435 [Branchiostoma floridae]
gi|229298527|gb|EEN69151.1| hypothetical protein BRAFLDRAFT_210435 [Branchiostoma floridae]
Length = 315
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 123/226 (54%), Gaps = 21/226 (9%)
Query: 297 PLKKVNEPCRL-ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
P +KV+ CR E C+ ++ GRY KYSR +SQT W++D ER GE S+ E+I I
Sbjct: 108 PPEKVDTMCRCQELTCYHEAVFVAGRYNKYSRTLSQTPWVVDGERRGETSVSELICTRIK 167
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEI--QNAREVPSELLVKEIESKINSLENK 413
M Y+F +AGRED+DVR LG GRPFL E+ + +VP + + K ++ +INS
Sbjct: 168 AMFMAQEYRFSSAGREDVDVRTLGRGRPFLVELIQPHISDVPPDKM-KLLQQEINSGTTD 226
Query: 414 LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
+ +++L++V S T+ + Q A W P ++ + ++T
Sbjct: 227 IA-IRDLQVVSST--TVDQCLVGCSQIFMIAECWFVPPREESGKLKVGETEKT------- 276
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+V+HRR R+++I+ M E I SQ+F LH+ TQAGTY
Sbjct: 277 -----KVIHRRPLASRDRVIHNMSGEYI--DSQHFRLHLKTQAGTY 315
>gi|116754299|ref|YP_843417.1| putative pseudouridylate synthase [Methanosaeta thermophila PT]
gi|121694004|sp|A0B7V3.1|PUS10_METTP RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|116665750|gb|ABK14777.1| THUMP domain protein [Methanosaeta thermophila PT]
Length = 452
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 22/251 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII------------DEERMGEASIEEIIGGNILPMCRGDS 362
P+Y GRY K R QTRW + RM + S++E+I G I+ +
Sbjct: 200 PLYIYGRYRKLQRGFPQTRWPCRVCGGRGCERCGNTGRMYQESVDELIRGPIVEAADAED 259
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID RMLGSGRPF+ E+ R +L + + +IN + V V +L
Sbjct: 260 TVFHGAGREDIDARMLGSGRPFVVEVVRPRR--RDLDLNALRDEINRRCSGKVEVSDLIF 317
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V +++ E K Y AL+ S P+++E + S+L + + Q+TP RV H
Sbjct: 318 VDKSMVEMVKNERFE--KTYEALIEFSVPVEEEKLK--SALSRLIGFVE--QRTPTRVSH 371
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ R + ++ ++E+ +G + + +G Y+KE + GD GRT PS+ +L
Sbjct: 372 RRADKVRRRAVHSAELEEFSGRTARITVR--CDSGLYVKELISGDAGRTRPSLAELLESD 429
Query: 543 AEILQLDVTDV 553
A +++LDV DV
Sbjct: 430 ARVVELDVIDV 440
>gi|76801838|ref|YP_326846.1| pseudouridylate synthase [Natronomonas pharaonis DSM 2160]
gi|76557703|emb|CAI49286.1| tRNA pseudouridine synthase [Natronomonas pharaonis DSM 2160]
Length = 412
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 18/252 (7%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R + GRY K R++ QT W +R E S+ E+I L RG FH AGRED
Sbjct: 162 RNSLAIYGRYRKLERDIPQTEW----DRYDE-SVAELISPPFLSAFRGTEAVFHGAGRED 216
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
+D MLG+GRPF+ EI+ R ++L + + + + + V ++NL V + + R
Sbjct: 217 VDALMLGTGRPFVLEIKQPRRRQADL--EALREEAHDHADGKVEIENLTAVTYE--MVER 272
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
E + K Y A V + + DF+ ++ L T I Q+TP RV HRR+ L RE+
Sbjct: 273 VKEHDGDKTYRATVEFGAAVDESDFEAALAELDGTT----IEQRTPHRVDHRRADLVRER 328
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
+ + E A + +H + G YIKE + GD GRT PS+ +LG A + LDV
Sbjct: 329 TVLDIDGELEADHAATVEVH--GEGGLYIKELMSGDEGRTEPSLAGLLGVGATVTALDVL 386
Query: 552 DVKM--NCFLTE 561
V+ FLT+
Sbjct: 387 AVEGVDEPFLTD 398
>gi|410671974|ref|YP_006924345.1| hypothetical protein Mpsy_2776 [Methanolobus psychrophilus R15]
gi|409171102|gb|AFV24977.1| hypothetical protein Mpsy_2776 [Methanolobus psychrophilus R15]
Length = 430
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 23/253 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSY 363
IY GRY K R + QTRW + S++E+I IL +
Sbjct: 188 IYIQGRYRKLVRGIPQTRWPCRNCGGRGCEKCSFTGKQYPESVDELIREEILKVTGASDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID M G+GRPF+ E+ N+ P V ++E++IN+ V V+ L++
Sbjct: 248 TFHGAGREDIDALMGGTGRPFVVEVLNS---PIRSFDVAKLENRINAFAQGKVEVQGLQM 304
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + ++ +A+ K Y V P+ E IS++ V +I Q+TP RV H
Sbjct: 305 VQKEVIEALKASKAD--KVYNLKVTFKEPVSKE--MLISAIDSLVGA-EISQRTPQRVSH 359
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ L R++ ++ M++ ++ + +Y ++ + G Y+KE V GD GRT PS+ +LG +
Sbjct: 360 RRADLVRKRNVHDMQLTEL--TDEYAIMQVHCGGGLYVKELVSGDEGRTQPSLTGLLGIQ 417
Query: 543 AEILQLDVTDVKM 555
A + +LDV V +
Sbjct: 418 ARVTELDVIKVDI 430
>gi|448327674|ref|ZP_21516996.1| pseudouridylate synthase [Natrinema versiforme JCM 10478]
gi|445617303|gb|ELY70901.1| pseudouridylate synthase [Natrinema versiforme JCM 10478]
Length = 459
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + +E++IN+ +
Sbjct: 238 HVVEAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRVRDPDPAA--LEAEINAAAD 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQ 471
V V+ L++ + + R E + K Y A V + P+ + DF+ ++ L+ T
Sbjct: 296 GSVEVEGLRLATYE--MVERVKEHDASKHYRADVEFADPVDEADFEAALAELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 350 VDQYTPERVDHRRAGLTRERTVYGIDGDLRSSAKAEVRLH--GEGGLYVKELISSDDGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETDAEVTALDVTGVE 430
>gi|449532034|ref|XP_004172989.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Cucumis
sativus]
Length = 66
Score = 123 bits (308), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/66 (84%), Positives = 62/66 (93%)
Query: 496 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
MKIEK+A SSQY+LLH+CTQAGTYIKEFVHGDLGRT+PSIGSIL CRAEILQLDVTD+KM
Sbjct: 1 MKIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKM 60
Query: 556 NCFLTE 561
+C L E
Sbjct: 61 DCHLGE 66
>gi|397775766|ref|YP_006543312.1| pseudouridylate synthase-like protein [Natrinema sp. J7-2]
gi|397684859|gb|AFO59236.1| pseudouridylate synthase-like protein [Natrinema sp. J7-2]
Length = 449
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGSQLSDDGEEPCDYCGGSGYMYETSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + + +E++IN
Sbjct: 238 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRFRDPD--PEALEAEINEAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQ 471
V V+ L++ + ++E +A K Y A V + P+ ++ F+T ++ L+ T
Sbjct: 296 GAVEVEGLRLATYEMVERVKEHDA--SKHYRADVEFAEPVDEDAFETALAELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 350 VDQYTPERVDHRRAGLTRERTVYGIDGDLRSPTEAEVRLH--GEGGLYVKELISSDNGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETDAEVTALDVTGVE 430
>gi|448366039|ref|ZP_21554293.1| pseudouridylate synthase [Natrialba aegyptia DSM 13077]
gi|445654648|gb|ELZ07499.1| pseudouridylate synthase [Natrialba aegyptia DSM 13077]
Length = 456
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 124/262 (47%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+ +
Sbjct: 183 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYETSVEQTVRP 242
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML +GRPF+ E++ R + +E +IN
Sbjct: 243 HVVDAMDGDEGTFHGAGREDVDARMLEAGRPFVLEVKRPRNRDPDPAA--LEREINEAAA 300
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V L++ + + R E + K Y A V S P+ + F+ +L E +R +
Sbjct: 301 GSVEVAGLRLATYE--MVERVKEHDASKHYRADVEFSEPIDETAFE--DALAE-LRGTTV 355
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + + + +H + G Y+KE V D GRT
Sbjct: 356 EQDTPQRVDHRRAALTRERTVYDIDGDLSEPTRAEVRIH--GEGGLYVKELVSSDDGRTE 413
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +LG AE+ LDVT V+
Sbjct: 414 PSLAGLLGTDAEVTALDVTGVE 435
>gi|344291788|ref|XP_003417612.1| PREDICTED: putative tRNA pseudouridine synthase Pus10 [Loxodonta
africana]
Length = 586
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 164/333 (49%), Gaps = 41/333 (12%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLG+LQ +C +KE F + V+ G + + VS PP +
Sbjct: 107 NVCNVCLGVLQ-EFC-EKE----------FIKKVCRKVETSGFEFTNLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRN--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E + C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------LADCHFLGAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFRKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
+KE++ KIN+ +K ++V++L++V ++L
Sbjct: 371 QEIKELQQKINNSSDK-IQVRDLQLVTRCAFSL 402
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 463 LKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKE 522
LK+ +I QKTP+RVLHRR R ++++ M+ + + +F LH+ TQAGTYIKE
Sbjct: 488 LKKASVDLKIDQKTPLRVLHRRPLAVRTRVVHTMETDYV--DEHHFRLHLKTQAGTYIKE 545
Query: 523 FVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
FVHGD GRT P+IGS+L A+IL+LDV V ++
Sbjct: 546 FVHGDFGRTKPNIGSLLDVTADILELDVESVDVD 579
>gi|336254998|ref|YP_004598105.1| hypothetical protein Halxa_3617 [Halopiger xanaduensis SH-6]
gi|335338987|gb|AEH38226.1| Conserved hypothetical protein CHP01213 [Halopiger xanaduensis
SH-6]
Length = 451
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGETGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G+ FH AGRED+D RML GRPF+ E++ + + E+E +IN+ +
Sbjct: 238 HVVEAMDGEEGTFHGAGREDVDARMLDEGRPFVLEVKRPKTRDPD--PAELEREINAAAD 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K Y A V + P+ ++ F ++L+E + +
Sbjct: 296 GSVEVEGLRLATYEMVERVKEHDA--SKHYRADVEFAEPVDEDTFD--AALQE-LAGTTV 350
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + ++ + + + LH + G Y+KE + D GRT
Sbjct: 351 QQDTPQRVDHRRASLTRERTVLDIEGDLLEPTEAEVRLH--GEGGLYVKELISSDDGRTE 408
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ ++G AE+ LDVT V+
Sbjct: 409 PSLAGLVGTDAEVTALDVTGVE 430
>gi|390937783|ref|YP_006401521.1| THUMP domain-containing protein [Desulfurococcus fermentans DSM
16532]
gi|390190890|gb|AFL65946.1| THUMP domain-containing protein [Desulfurococcus fermentans DSM
16532]
Length = 442
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 15/239 (6%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PI Y K R +S W + R SI++ I +I + K HAAGRED+
Sbjct: 210 PILLKAIYFKRGRRISHVPWFTSNGSRKYPESIQDFIRDSIASLFDARDIKIHAAGREDV 269
Query: 374 DVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
D RMLGSGRP + E++ R V +LL L+++ ++V + + +
Sbjct: 270 DARMLGSGRPLVIEVKEPGFRNVDLDLLN-------YILDDQFIKVSVIGAATRRDIESI 322
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+EG +++K Y V +P+ + D + +SS + + Q+TP+R+L R+ +RE+
Sbjct: 323 KEGSRKRRKIYRVTVLTEKPVSEGDLEKLSSF---FKERSVKQRTPMRILRRKK--DRER 377
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
I +IE I+ SS+ F + G Y+KE VH D GRT P ILG A L+LDV
Sbjct: 378 IKRVHRIEVISVSSRVFEALIYCDGGLYVKELVHCDNGRTTPCFSEILGTPAYPLELDV 436
>gi|448350815|ref|ZP_21539626.1| pseudouridylate synthase [Natrialba taiwanensis DSM 12281]
gi|445635687|gb|ELY88854.1| pseudouridylate synthase [Natrialba taiwanensis DSM 12281]
Length = 456
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 123/262 (46%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+ +
Sbjct: 183 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYETSVEQTVRP 242
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML +GRPF+ E++ R + +E +IN
Sbjct: 243 HVVDAMDGDEGTFHGAGREDVDARMLEAGRPFVLEVKRPRNRDPDPAA--LEREINEAAA 300
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V L++ + + R E + K Y A V S P+ + F+ +L E +R +
Sbjct: 301 GSVEVAGLRLATYE--MVERVKEHDASKHYRADVEFSEPIDETAFE--DALAE-LRGTTV 355
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + + +H + G Y+KE V D GRT
Sbjct: 356 EQDTPQRVDHRRAALTRERTVYDTDGDLSEPTRAEVRIH--GEGGLYVKELVSSDDGRTE 413
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +LG AE+ LDVT V+
Sbjct: 414 PSLAGLLGTDAEVTALDVTGVE 435
>gi|448342958|ref|ZP_21531900.1| pseudouridylate synthase [Natrinema gari JCM 14663]
gi|445624018|gb|ELY77407.1| pseudouridylate synthase [Natrinema gari JCM 14663]
Length = 449
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGSQLSDDGEEPCDYCGGSGYMYETSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
++ GD FH AGRED+D RML GRPF+ E++ R + + +E++IN
Sbjct: 238 YVVDAMNGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRFRDPD--PEALEAEINEAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQ 471
V V+ L++ + + R E + K Y A V + P+ ++ F+T ++ L+ T
Sbjct: 296 GAVEVEGLRLATYE--MVERVKEHDASKHYRADVEFAEPVDEDAFETALAELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 350 VDQYTPERVDHRRAGLTRERTVYGIDGDLRSPTEAEVRLH--GEGGLYVKELISSDNGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETDAEVTALDVTGVE 430
>gi|395646261|ref|ZP_10434121.1| Conserved hypothetical protein CHP01213 [Methanofollis liminatans
DSM 4140]
gi|395443001|gb|EJG07758.1| Conserved hypothetical protein CHP01213 [Methanofollis liminatans
DSM 4140]
Length = 410
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 130/257 (50%), Gaps = 31/257 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDS 362
P+YF GRY+KY R + QT W +M S+EE+IGG + + +
Sbjct: 162 PVYFKGRYMKYERGIPQTHWDCRVCHGKGCERCNYTGKMYADSVEELIGGPAIEIFDAKN 221
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H +GREDID RMLG+GRPF+ E+ + + ++ + +E IN+ + V VK
Sbjct: 222 AVLHGSGREDIDARMLGTGRPFVMEMMHP--LRRDIDLARLEEAINASADGRVGVK---- 275
Query: 423 VGSQGWTLMREGEAEK----QKQYAALVWISRPLQ-DEDFQTISSLKETVRCYQILQKTP 477
GW+ E E K K+Y LV + + DE ++SL V I Q+TP
Sbjct: 276 --ITGWSSHAEVETLKSNKAHKKYRILVEVDGTISLDELKSALASLNGVV----IHQRTP 329
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
RV HRR+ RE+ + + I+ F++ + +AG YIKE V GD GRT PS+
Sbjct: 330 QRVAHRRADRIRERRV--IDIQSPGMQDGKFVIDVVGEAGLYIKELVSGDNGRTKPSLAE 387
Query: 538 ILGCRAEILQLDVTDVK 554
ILG A + LDV V+
Sbjct: 388 ILGKDAHVTSLDVVLVE 404
>gi|448360108|ref|ZP_21548751.1| pseudouridylate synthase [Natrialba chahannaoensis JCM 10990]
gi|445640485|gb|ELY93573.1| pseudouridylate synthase [Natrialba chahannaoensis JCM 10990]
Length = 451
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 179 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEACDYCDGSGYMYDTSVEQVVRP 238
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ RE + V +ES+IN
Sbjct: 239 HVVDAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPRERTPD--VATLESEINEAAE 296
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ ++E +A K Y A V +++++F+ ++L+E +R +
Sbjct: 297 GAVEVEGLRLASYDMVERIKEHDA--SKHYRADVEFGDSVEEDEFE--AALEE-LRGTTV 351
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + E + +H + G YIKE + D GRT
Sbjct: 352 EQDTPQRVDHRRAALTRERTVYDAEGELREPTQAEVRIH--GEGGLYIKELISSDEGRTV 409
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L A + LDVT V+
Sbjct: 410 PSLAGLLETDAVVTALDVTGVE 431
>gi|435846201|ref|YP_007308451.1| TIGR01213 family protein [Natronococcus occultus SP4]
gi|433672469|gb|AGB36661.1| TIGR01213 family protein [Natronococcus occultus SP4]
Length = 451
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLE 411
+++ G+ FH AGRED+D RML GRPF+ E++ R P E+E+ IN
Sbjct: 238 HVVAAMDGEEGTFHGAGREDVDARMLEEGRPFVLEVKRPKRRDPDP---AELEATINDAA 294
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ 471
+ V V+ L++ + ++E +A K+Y A V + P+ ++ F+T +L+E +
Sbjct: 295 DGAVAVEGLRLATYEMVERVKEHDA--SKRYRADVEFADPVAEDAFET--ALEE-LSGTT 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + LH + G Y+KE + D GRT
Sbjct: 350 VEQYTPQRVDHRRAGLTRERTVYEIDGDLREPTRAEVRLH--GEGGLYVKELISSDEGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +LG A++ LDVT V+
Sbjct: 408 EPSLAGLLGTDADVTALDVTGVE 430
>gi|126179905|ref|YP_001047870.1| pseudouridylate synthase [Methanoculleus marisnigri JR1]
gi|125862699|gb|ABN57888.1| THUMP domain protein [Methanoculleus marisnigri JR1]
Length = 412
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 29/242 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG------------EASIEEIIGGNILPMCRGDS 362
P++F GRYLKY R + QT W R S+EE+IG + +
Sbjct: 163 PVFFVGRYLKYERGIPQTHWDCRACRGAGCEKCNFTGKQYADSVEELIGRPAIEAFNAAN 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H AGREDID RMLGSGRPF+ EI+ R+ +L +E++IN V V
Sbjct: 223 AVLHGAGREDIDARMLGSGRPFVLEIEEPRKRSVDLAA--LEAEINREAAGRVEVH---- 276
Query: 423 VGSQGWT---LMREGEAEK-QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPI 478
+GW +++ +++K K+Y LV I + ++F+ + + ++ I Q+TP
Sbjct: 277 --LEGWADRKMVQSLKSDKAHKKYRILVEIDGSVTPDEFR---AALDQLKGVTIRQRTPN 331
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ RE+ + + IE + + + +AG YIKE V GD GRT PS+ I
Sbjct: 332 RVAHRRADKVRERQV--LDIECTGSVDGRYWVEVVGEAGLYIKELVSGDNGRTQPSLAQI 389
Query: 539 LG 540
LG
Sbjct: 390 LG 391
>gi|218884720|ref|YP_002429102.1| putative pseudouridylate synthase [Desulfurococcus kamchatkensis
1221n]
gi|218766336|gb|ACL11735.1| predicted pseudouridylate synthase [Desulfurococcus kamchatkensis
1221n]
Length = 447
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 15/239 (6%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PI Y K R +S W + R SI++ I +I + K HAAGRED+
Sbjct: 212 PILLKAIYFKRGRRISHVPWFTSNGSRKYPESIQDFIRDSIARLFDARDIKIHAAGREDV 271
Query: 374 DVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
D RMLGSGRP + E++ R V +LL L+++ ++V + + +
Sbjct: 272 DARMLGSGRPLVIEVKEPGFRNVDLDLLN-------YILDDQFIKVSVIGAATRRDIESI 324
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+EG +++K Y V +P+ + D + +SS + + Q+TP R+L R+ +RE+
Sbjct: 325 KEGSRKRRKIYRVAVLTEKPVSEGDLEKLSSF---FKERSVKQRTPTRILRRKK--DRER 379
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
I +IE I+ SS+ F + G Y+KE VH D GRT P ILG A L+LDV
Sbjct: 380 IKRVYRIEVISISSRVFEALIYCDGGLYVKELVHCDNGRTTPCFSEILGTPAYPLELDV 438
>gi|124486382|ref|YP_001030998.1| putative pseudouridylate synthase [Methanocorpusculum labreanum Z]
gi|124363923|gb|ABN07731.1| pseudouridylate synthase-like protein [Methanocorpusculum labreanum
Z]
Length = 411
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 126/255 (49%), Gaps = 31/255 (12%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSY 363
+YF GRYLKY R + QT W + S+EE+I + D
Sbjct: 162 LYFYGRYLKYERGIPQTHWDCRACKGKGCEICNFTGKQYPTSVEELIAEAPKRIFESDCG 221
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H AGREDID M+G+GRPF+ E+QN ++ +L KE+E+ IN+ N V V
Sbjct: 222 VLHGAGREDIDAVMIGTGRPFVMEMQNPKKRSFDL--KELENAINASANPRVGVV----- 274
Query: 424 GSQGWTLMREGEAEK----QKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPI 478
+ W+ + E K K Y LV I + E Q +S LK I Q+TP
Sbjct: 275 -LESWSDKKTVEMLKSNKGHKTYRILVSIDDRISLETVQNAVSKLKGA----WIDQRTPE 329
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ L R++ + + I + + + L + + G YIKE V GD GRT PS+ I
Sbjct: 330 RVSHRRADLVRKRQV--IDIGVLGEENGLYRLEVLGEGGLYIKELVSGDGGRTTPSLAEI 387
Query: 539 LGCRAEILQLDVTDV 553
L A++++LDV V
Sbjct: 388 LAVPAKVVELDVVQV 402
>gi|433592394|ref|YP_007281890.1| TIGR01213 family protein [Natrinema pellirubrum DSM 15624]
gi|448333740|ref|ZP_21522929.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
gi|433307174|gb|AGB32986.1| TIGR01213 family protein [Natrinema pellirubrum DSM 15624]
gi|445621619|gb|ELY75090.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
Length = 457
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 127/266 (47%), Gaps = 39/266 (14%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR---EVPSELLVKEIESKINS 409
+++ GD FH AGRED+D RML GRPF+ E++ R P+EL E++IN
Sbjct: 238 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRVRDPDPAEL-----EAEIND 292
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVR 468
V V L++ + + R E + K+Y A V + P+ + F+T + L+ T
Sbjct: 293 AAEGSVEVDGLRLATHE--MVERVKEHDASKRYRADVEFAEPVDGDAFETALDELEGTT- 349
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
+ Q TP RV HRR+ L RE+ + I+ S + + + G Y+KE + D
Sbjct: 350 ---VDQYTPERVDHRRAGLTRERTV--YDIDGDLRSPTEVEVRLHGEGGLYVKELISSDG 404
Query: 529 GRTNPSIGSILGCRAEILQLDVTDVK 554
GRT PS+ +L AE+ LDVT V+
Sbjct: 405 GRTEPSLAGLLETDAEVTALDVTGVE 430
>gi|294495702|ref|YP_003542195.1| THUMP domain protein [Methanohalophilus mahii DSM 5219]
gi|292666701|gb|ADE36550.1| THUMP domain protein [Methanohalophilus mahii DSM 5219]
Length = 430
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 124/252 (49%), Gaps = 21/252 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWII------------DEERMGEASIEEIIGGNILPMCRGDSY 363
+Y GRY K R + QTRW D + S++E++ ++ D
Sbjct: 188 VYVEGRYRKLVRGIPQTRWPCRKCKGKGCPSCDDTGKQYPESVDELVSEPVIEAFDSDDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
KFH AGREDID MLG+GRPF+ E N L ++E +IN+ + + V+ LK
Sbjct: 248 KFHGAGREDIDALMLGAGRPFVIEALNPGRRDYNL--SDLEEQINNKADGKIEVEGLKFA 305
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ A+ K Y V + P+ ++ I S E + I Q+TP RV HR
Sbjct: 306 DKARIQTLKNSTAD--KVYKLKVTFNAPVTED---AIRSALEVFKGNLIEQRTPQRVSHR 360
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ IE + + ++ + + G Y+KE + D GRT PS+ +LG A
Sbjct: 361 RADLVRKRQVH--SIELLEYHQDHAIIRVDCEGGLYVKELISSDEGRTTPSLTGLLGIDA 418
Query: 544 EILQLDVTDVKM 555
+ LDV DVK+
Sbjct: 419 MVEDLDVVDVKI 430
>gi|448394693|ref|ZP_21568365.1| pseudouridylate synthase [Haloterrigena salina JCM 13891]
gi|445662154|gb|ELZ14927.1| pseudouridylate synthase [Haloterrigena salina JCM 13891]
Length = 457
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 128/258 (49%), Gaps = 31/258 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGTQLSDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + K +E +IN+
Sbjct: 238 HVVDAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVK--RPKIRDPDPKTLEREINAAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K+Y A V + P+ + DF+ ++L+E + +
Sbjct: 296 GSVEVEGLRLATYEMVERVKEHDA--SKRYRADVEFAEPVDEADFE--AALEE-LTGTTV 350
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + E + + LH + G Y+KE + D GRT
Sbjct: 351 QQDTPQRVDHRRADLTRERTVYDIDGELASPTEAEVRLH--GEGGLYVKELISSDDGRTE 408
Query: 533 PSIGSILGCRAEILQLDV 550
PS+ +L AE+ LDV
Sbjct: 409 PSLAGLLETDAEVTALDV 426
>gi|448384515|ref|ZP_21563353.1| pseudouridylate synthase [Haloterrigena thermotolerans DSM 11522]
gi|445658581|gb|ELZ11399.1| pseudouridylate synthase [Haloterrigena thermotolerans DSM 11522]
Length = 457
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + E+E++IN +
Sbjct: 238 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVK--RPAVRDPDPAELEAEINEAAD 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQ 471
V V L++ + + R E + K Y A V + + ++ F+T ++ L+ T
Sbjct: 296 GAVEVAGLRLATYE--MVERVKEHDASKHYRADVEFAESVDEDAFETALAELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 350 VEQYTPERVDHRRAGLTRERTVYAIDGDLRSPTEAEVRLH--GEGGLYVKELISSDGGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETDAEVTALDVTGVE 430
>gi|327400290|ref|YP_004341129.1| hypothetical protein Arcve_0381 [Archaeoglobus veneficus SNP6]
gi|327315798|gb|AEA46414.1| Conserved hypothetical protein CHP01213 [Archaeoglobus veneficus
SNP6]
Length = 372
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 29/281 (10%)
Query: 287 DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE-------- 338
D EP T + ++K++ R+ L Y GRY K RN+ QTRW+
Sbjct: 105 DREPDVTIIYNIEKMDYETRIASL------YIYGRYKKRVRNIPQTRWLCSACDGKGCEV 158
Query: 339 ----ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREV 394
+ S+EE+I M G H AGRED+D RMLG+GRPF+ EIQN ++
Sbjct: 159 CGFTGKRYPTSVEELIAEPCRRMAEGSYAVLHGAGREDVDARMLGNGRPFIVEIQNPKKR 218
Query: 395 PSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQD 454
+L +++E IN V V +K ++ ++ A+ +K Y A+V R +
Sbjct: 219 HIDL--EKLEEIINREARGKVAVCCMKFAKARDVAFIK--NAKFRKVYRAIVEFDREVSR 274
Query: 455 EDFQ-TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMC 513
E+ + + L V I Q TP RV HRR+ L R++ +K+ G+ ++ +
Sbjct: 275 EELEDALKVLSNRV----IEQYTPKRVEHRRANLLRKRRTYGIKLLLHRGNKA--VIEIE 328
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
++G YIKE V GD GRT PS+ +L A++++LDV V+
Sbjct: 329 AESGLYIKELVSGDEGRTRPSLSEVLNNYAKVVKLDVIRVE 369
>gi|11498752|ref|NP_069981.1| hypothetical protein AF1152 [Archaeoglobus fulgidus DSM 4304]
gi|74513032|sp|O29113.1|PUS10_ARCFU RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|2649435|gb|AAB90092.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 357
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 136/253 (53%), Gaps = 28/253 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDS 362
P++ GRYLK RN+SQTRW+ + +S+EE+I + + +
Sbjct: 118 PVFIYGRYLKRVRNISQTRWLCGYCNGEGCEVCNFTGKKYVSSVEELIAMPAVRLFKARD 177
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
K H AGRED+D RMLG+GRPF+ E+ R+ +L KE+E INS K V V++L+
Sbjct: 178 AKLHGAGREDVDARMLGTGRPFVLEVIEPRKRFVDL--KELEEAINS--QKWVAVRDLEY 233
Query: 423 VGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDF-QTISSLKETVRCYQILQKTPIRV 480
++ +RE + E+ +K Y A V ++ E + + SLK +R Q+TP+RV
Sbjct: 234 TDAEK---VREVKTERHRKTYRAKVVFEEKVERERLIEALESLKGEIR-----QRTPMRV 285
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ R + + ++ I + + ++ +AG YIKE V GD GRT PS+ +G
Sbjct: 286 SHRRADRVRVRRLYDARL--IHHTGRVAVVEFEAEAGLYIKELVSGDNGRTRPSLAEKVG 343
Query: 541 CRAEILQLDVTDV 553
A + +LDV V
Sbjct: 344 VNARVDRLDVIAV 356
>gi|13541142|ref|NP_110830.1| pseudouridylate synthase [Thermoplasma volcanium GSS1]
gi|14324528|dbj|BAB59455.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 388
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 27/245 (11%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
++ G+Y KY R++ QTRWI ++ G+ SIE IIG L + G +Y H +GRED+DV
Sbjct: 160 LFIYGKYRKYRRDMPQTRWI--HKKDGD-SIESIIGEAALRIAGGKNYYLHGSGREDVDV 216
Query: 376 RMLGSGRPFLFEIQN--AREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
RMLG+GR F+ E++ R +L + + + +E + +L V + T+
Sbjct: 217 RMLGNGREFVIEVEAPIMRTFDLSILSETVNRSMKGVE-----IFDLSFVDRK--TVKEI 269
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ-----ILQKTPIRVLHRRSPLE 488
E + K Y ++ E I LK C + I Q+TP+RV RRS L
Sbjct: 270 KEEKHSKVYDCII--------EGDTDIDKLKLEEACTEMNGKNIYQRTPLRVAQRRSDLI 321
Query: 489 REKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
R + I M++ + G ++ +AGTYIKE + GD GRTNPS+ S G + + +L
Sbjct: 322 RTRKIERMELVAVEGKEAEIVVQ--AEAGTYIKELISGDSGRTNPSLSSKYGSQLNVKEL 379
Query: 549 DVTDV 553
DV +
Sbjct: 380 DVIKI 384
>gi|170291203|ref|YP_001738019.1| pseudouridylate synthase [Candidatus Korarchaeum cryptofilum OPF8]
gi|332319810|sp|B1L7A7.1|PUS10_KORCO RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|170175283|gb|ACB08336.1| Predicted pseudouridylate synthase [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 373
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 27/298 (9%)
Query: 269 VSTTEVIPVDEKSSNGLQ-DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSR 327
V+ T ++ V S GL+ EP F ++ + +LE P++ GRY K R
Sbjct: 87 VTLTRLLDVAISSLTGLKVSQEPDAILIFDFERGD--VKLEL----APVFIFGRYRKLQR 140
Query: 328 NVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+SQ+R E ++ + S+E I+G + + Y H AGRED+D
Sbjct: 141 GISQSRRKCPECGGRGCEACGWKGKIPQGSVEGIVGEVMREFFSAEDYVLHGAGREDVDA 200
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLG GRPF+ E+ + + ++L +E+ES+IN L+ VKNL+ + +++E
Sbjct: 201 RMLGEGRPFVMELLSPKRRSADL--REVESEINRRAAGLIEVKNLEFSRREKIRILKERS 258
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
+K Y ALV + +++ + + + L+ V I Q+TP RVL RR+ + R K +
Sbjct: 259 PNVKKLYRALVEVEGGVEEGELELLKGLEGAV----IRQRTPKRVLWRRADITRLKRVYE 314
Query: 496 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+ +I + F L + G Y+KE + GD GRT+PS+ ILG ++ +LDV +V
Sbjct: 315 VNFRRI--DDKKFELFVLCDGGLYVKELISGDDGRTSPSVTEILGKKSFCSELDVLEV 370
>gi|209877669|ref|XP_002140276.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555882|gb|EEA05927.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 492
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 140/292 (47%), Gaps = 58/292 (19%)
Query: 315 PIYFGGRYLKYSRNVSQTRW-------IIDEERMG--------EASIEEIIGGNILPMCR 359
PIY GRY K SR +SQ+ W + D + + SIE+I+ ++ +
Sbjct: 202 PIYISGRYKKLSRRISQSIWHYNSSSNVNDSQNDNLCGPPFPIKTSIEDILNYSLNKLIS 261
Query: 360 GDSYKFHAAGREDIDVRMLG---SGRPFLFEIQNAREVPSELLVKEIESKINS---LENK 413
F A+GRED+DVRMLG GRPF EI + IN L N+
Sbjct: 262 YKKCTFSASGREDVDVRMLGVSNGGRPFALEISGISSKHHLFYSNIVNPSINDNIQLRNE 321
Query: 414 LVR--VKNLKI----------VGSQGWTLMREGE---AEKQKQYAALVWISRPLQDEDFQ 458
+ + N+K+ V +L++E +EK K Y+ + + + L ++++
Sbjct: 322 FIAELISNVKLLSGGHVLISQVSFSNTSLIKEMNLQVSEKLKAYSCICYTTYNLTPQNYK 381
Query: 459 TISSLKETVRCY----QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCT 514
L+ Y I Q+TPIRVLHRR +R + I + I++I +S F L + T
Sbjct: 382 ---ELRNQFFLYTLPISIKQRTPIRVLHRRKNTDRIRNIFNINIKEINENS--FKLDLIT 436
Query: 515 QAGTYIKEFVHGDLGRTNPSIGSIL-----------GCRAE--ILQLDVTDV 553
+AG YIKEFVHGD GRT P++G I+ R + ILQLDV DV
Sbjct: 437 EAGMYIKEFVHGDFGRTVPNLGDIIQKVINNDSKGGNVRIDVCILQLDVLDV 488
>gi|284164031|ref|YP_003402310.1| pseudouridylate synthase [Haloterrigena turkmenica DSM 5511]
gi|284013686|gb|ADB59637.1| pseudouridylate synthase-like protein [Haloterrigena turkmenica DSM
5511]
Length = 457
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGTQLSDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + +++E +IN
Sbjct: 238 HVVEAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVK--RPKIRDPDPEKLEREINDAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K+Y A V + P+ + DF+ ++L+E + +
Sbjct: 296 GSVEVEGLRLATYEMVERVKEHDA--SKRYRADVEFANPVDEADFE--AALEE-LSGTNV 350
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + E + + LH + G Y+KE + D GRT
Sbjct: 351 QQDTPQRVDHRRADLTRERTVYDIDGELRSPTEAEVRLH--GEGGLYVKELISSDDGRTE 408
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDV V+
Sbjct: 409 PSLAGLLETDAEVTALDVFGVE 430
>gi|297619970|ref|YP_003708075.1| THUMP domain-containing protein [Methanococcus voltae A3]
gi|332319840|sp|D7DQH5.1|PUS10_METV3 RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|297378947|gb|ADI37102.1| THUMP domain protein [Methanococcus voltae A3]
Length = 519
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 120/241 (49%), Gaps = 23/241 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + Q+ W R S+EEII ++ + +G
Sbjct: 264 NPIFIKGRYRKTKRGIPQSHWDCRSCRGKGCEKCNFTGKQYPTSVEEIIAEPVMNIAKGS 323
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
HAAGREDIDV+MLG GRPF+ E++ + +LL +I +IN +E V V +L+
Sbjct: 324 GEALHAAGREDIDVKMLGKGRPFVIEVKEPKVRKMDLL--KIMDEINKIEG--VEVSDLE 379
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWI-SRPLQDEDFQT--ISSLKETVRCYQILQKTPI 478
G + + E K Y ALV I L++ DF+ I L E + +I Q+TP
Sbjct: 380 -YGVKNDVRFFKNEPH-TKTYCALVSIVDEELENHDFENDKIVELSEKLENLRIDQRTPH 437
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ L R + I E I S F L + G YIKE + GD GRT PSI I
Sbjct: 438 RVSHRRADLVRVRNIYKAWCEPIDEKS--FKLTVYCDGGLYIKELISGDEGRTKPSISEI 495
Query: 539 L 539
L
Sbjct: 496 L 496
>gi|374636845|ref|ZP_09708390.1| THUMP domain-containing protein [Methanotorris formicicus Mc-S-70]
gi|373557667|gb|EHP84062.1| THUMP domain-containing protein [Methanotorris formicicus Mc-S-70]
Length = 434
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 23/252 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGD 361
P++ GRY K R + QT W + S+EEII + + +G
Sbjct: 189 NPLFIKGRYRKLVRGIPQTHWHCRFCRGKGCEKCNFTGKRYPTSVEEIIAEPFMKVTKGT 248
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGREDIDVRMLG+GRPF+ EI+ + ++ + ++ ++N ++ V + NL+
Sbjct: 249 KEVFHGAGREDIDVRMLGNGRPFVLEIKEPK--IRKIDLNKVAEEVN--KSGTVEILNLE 304
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
G + + + E K K Y ALV + ED + + + E + I QKTP RVL
Sbjct: 305 -YGERKDVVFFKNEPHK-KTYRALVECEEKITSEDIEKVINTCENL---TIHQKTPKRVL 359
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + + KI +F + + G YIKE + GD GRT+PSI IL
Sbjct: 360 HRRADLTRIRKVYKVWAHKI--DDNHFEMKIFCDGGLYIKELISGDDGRTSPSISEILNK 417
Query: 542 RAEILQLDVTDV 553
+ +LDV ++
Sbjct: 418 KCICKELDVLEI 429
>gi|448376202|ref|ZP_21559486.1| pseudouridylate synthase [Halovivax asiaticus JCM 14624]
gi|445658220|gb|ELZ11043.1| pseudouridylate synthase [Halovivax asiaticus JCM 14624]
Length = 504
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 131/282 (46%), Gaps = 53/282 (18%)
Query: 315 PIYFGGRYLKYSRNVSQTRW-----------IIDEER-----------MGEASIEEIIGG 352
P + GRY K R++ QT W + D+ + + SIEE +
Sbjct: 180 PAFVYGRYRKIERDIPQTEWPCRECGGSGIQLADDGEEPCDYCGGSGYLYDTSIEETVRP 239
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G FH AGRED+D RMLG+GRPF+ E+++ + V+ +E++IN
Sbjct: 240 HVVAAMDGREGTFHGAGREDVDARMLGTGRPFVLEVKHPHHRTPD--VEALEAEINEAAA 297
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQ----DEDFQTISSLKETVR 468
V V+ L++ T+ R E + K+Y A V P+ DE F ++
Sbjct: 298 GAVEVEGLRLATHD--TVERVKEHDASKRYRAAVQFDEPVSATSLDEAFAELAGTT---- 351
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIE-----KIAGSSQYFLL-----------HM 512
+ Q TP RV HRR+ L RE+ + + E ++A S + LL +
Sbjct: 352 ---VEQYTPQRVDHRRAELTRERTVYAIDGEPGIADEMADSVETELLEPEDVDTTATIEV 408
Query: 513 CTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
G YIKE + GD GRT PS+ +L AE++ LDV V+
Sbjct: 409 HGAGGLYIKELISGDDGRTEPSVAGLLDTGAEVMALDVLAVE 450
>gi|389860813|ref|YP_006363053.1| pseudouridylate synthase [Thermogladius cellulolyticus 1633]
gi|388525717|gb|AFK50915.1| putative pseudouridylate synthase [Thermogladius cellulolyticus
1633]
Length = 437
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P+Y G Y+K RN+S T WI D R SI+E + + + + D+ HAAGRED+
Sbjct: 200 PVYLRGYYVKTGRNISHTPWITSDGARKYPLSIQEFVDSRLRDLFKADAVLIHAAGREDV 259
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINS-LENKLVRVKNLKIVGSQGWTLMR 432
D RM+G+GRP + E+ R L S++NS LE V V+ + +++
Sbjct: 260 DARMVGTGRPLVVEVVRPRRRKVGL------SELNSLLEGGAVTVRLEGYAQPRDKRVVK 313
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTI-SSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
E +K K Y LV + + + + + S +E V + Q+TP RVL R+ + R +
Sbjct: 314 ENLGKKAKVYKVLVLLGGEVNGDKLRQLEDSFQERV----VTQRTPTRVLRRKKDIARRR 369
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
+ +K+ + G L++ ++G Y+KE VH D GRT+P +LG +A L+LDV
Sbjct: 370 KVYSVKVASVMGRLVEVLIY--CESGLYVKELVHCDNGRTDPCFAGVLGVQALPLELDV 426
>gi|448397462|ref|ZP_21569495.1| pseudouridylate synthase [Haloterrigena limicola JCM 13563]
gi|445672561|gb|ELZ25132.1| pseudouridylate synthase [Haloterrigena limicola JCM 13563]
Length = 459
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G+ FH AGRED+D RML GRPF+ E++ R + V+ +E +IN
Sbjct: 238 HVVAAMDGEEGTFHGAGREDVDARMLEDGRPFVLEVKRPRVRDPD--VEALEREINDAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQ 471
V V+ L++ + ++E +A K Y A V P++ + F ++ L+ T
Sbjct: 296 GSVEVEGLRLATYEMVERVKEHDA--SKHYRADVAFGEPVEADAFDAALAELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + LH + G Y+KE + D GRT
Sbjct: 350 VDQYTPERVDHRRAGLTRERTVYEIDGDLYEPTEAEVRLH--GEGGLYVKELISSDNGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETDAEVTALDVTGVE 430
>gi|297526050|ref|YP_003668074.1| THUMP domain-containing protein [Staphylothermus hellenicus DSM
12710]
gi|297254966|gb|ADI31175.1| THUMP domain protein [Staphylothermus hellenicus DSM 12710]
Length = 437
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 31/247 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG----EASIEEIIGGNILPMCRGDSYKFHAAGR 370
PI F GRY K RN+S T W+ + G S+EE + + + HA+GR
Sbjct: 205 PILFEGRYWKRGRNISHTIWL---SKTGIKEYPYSLEEFFNDRLREIFESERIVLHASGR 261
Query: 371 EDIDVRMLGSGRPFLFEIQNAR------EVPSELLVKE-IESKINSLENKLVRVKNLKIV 423
ED+D RMLG+GRP + E++N R ++ +ELL IE++I ++ +++ LK
Sbjct: 262 EDVDARMLGTGRPMVIEVKNPRFRYVDMDLINELLRSTLIEAEITGYSSR-AKIEYLKGE 320
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
GS+ K+K Y LV+ + P+ + + L+E R I Q+TP R+L R
Sbjct: 321 GSK-----------KRKAYKILVYTAEPITSDKLRM---LEEEYRNRVIHQRTPKRILRR 366
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
+ R + + +K K+ + + + C G Y+KE VHGD GRT PS +LG +A
Sbjct: 367 KKDTLRIRRVYEVKT-KLLHNKLFEAIVYC-DGGLYVKELVHGDDGRTTPSFSDVLGVQA 424
Query: 544 EILQLDV 550
L+LDV
Sbjct: 425 YPLELDV 431
>gi|330508530|ref|YP_004384958.1| hypothetical protein MCON_2750 [Methanosaeta concilii GP6]
gi|328929338|gb|AEB69140.1| conserved hypothetical protein TIGR01213 [Methanosaeta concilii
GP6]
Length = 451
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 22/250 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSY 363
++ GRY K R + QTRW E RM + S++E+I ++ D
Sbjct: 197 LFLRGRYRKLVRGIPQTRWPCRECRGRGCPRCNGTGRMYQESVDELIRPAVIRAAEADDT 256
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH AGREDID RMLGSGRPF+ E R +L ++ IN V V L +
Sbjct: 257 VFHGAGREDIDARMLGSGRPFIVEAVRPRIRTIDL--AGLQENINRHAEGKVEVIELIVA 314
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
S + R EA K Y+ALV + + +E + S LK V Q+ Q+TP RV HR
Sbjct: 315 DSA--MVERLKEATFLKTYSALVRLGAEVAEEKLK--SGLKRVV--GQVDQRTPTRVSHR 368
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ R + + + ++ G+ +++ +G YIKE + GD GRT P++ IL A
Sbjct: 369 RADKLRVRKVYSADLIEVVGN--LARINIKGDSGLYIKELISGDGGRTQPNLAEILRVDA 426
Query: 544 EILQLDVTDV 553
+ +LDV DV
Sbjct: 427 VVEELDVIDV 436
>gi|375083681|ref|ZP_09730699.1| putative pseudouridylate synthase [Thermococcus litoralis DSM 5473]
gi|374741681|gb|EHR78101.1| putative pseudouridylate synthase [Thermococcus litoralis DSM 5473]
Length = 390
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 29/245 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y GRY K R + QT R + S+ II +G FH AGRED+D
Sbjct: 165 PLYIYGRYRKLVRGIPQTPL-----RGFKESVASIICKPFSKATKGKCI-FHGAGREDVD 218
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
VRMLG+GRPF+ E++ R + + + IE +IN + V V L+ + +
Sbjct: 219 VRMLGNGRPFVVEVK--RPIKRHIDLGRIEEEINK--SGKVEVLGLRFITKE-------- 266
Query: 435 EAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLE 488
EAEK +K+Y ALV++ + E+ + + E I Q+TP RVL RR+ L
Sbjct: 267 EAEKVLTSNHKKEYEALVYVEEGISREEVEKVVKALEGA---TIHQRTPRRVLGRRADLV 323
Query: 489 REKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
R + ++ + E + ++F L + T G YIKE + GD GRT PS+ ILG +A +L
Sbjct: 324 RVRKVHEAEGELL--DERHFKLRLITDGGLYIKELISGDKGRTTPSVSEILGKKAWCEKL 381
Query: 549 DVTDV 553
DV ++
Sbjct: 382 DVLNI 386
>gi|448320194|ref|ZP_21509682.1| pseudouridylate synthase [Natronococcus amylolyticus DSM 10524]
gi|445606600|gb|ELY60504.1| pseudouridylate synthase [Natronococcus amylolyticus DSM 10524]
Length = 458
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G+ FH AGRED+D RML GRPF+ E++ R E ++E +IN
Sbjct: 238 HVVEAMDGEEGTFHGAGREDVDARMLEEGRPFVLEVKRPR--FREPDPADLEREINDAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V+ L++ + ++E +A K+Y A V S + ++ F+T +L+E + +
Sbjct: 296 GAVEVEGLRLATYEMVERVKEHDA--SKRYRADVEFSSAIDEDAFET--ALEE-LSGTTV 350
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + + + ++ LH G Y+KE + D GRT
Sbjct: 351 EQYTPQRVDHRRAGLTRERTVYEIDGDLESPTNAEVRLHGA--GGLYVKELISSDEGRTE 408
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 409 PSLAGLLETEAEVTALDVTGVE 430
>gi|374629549|ref|ZP_09701934.1| Conserved hypothetical protein CHP01213 [Methanoplanus limicola DSM
2279]
gi|373907662|gb|EHQ35766.1| Conserved hypothetical protein CHP01213 [Methanoplanus limicola DSM
2279]
Length = 415
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 21/253 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
P+Y GRY K R + QTRW E R M + S+EE+IG ++ + +
Sbjct: 162 NPVYIYGRYRKNIRGIPQTRWHCRECRGSGCERCGFTGKMYQDSVEELIGRPLIELFEAE 221
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
H +GREDID M+G+GRPF+ EI R ++ +++ES I V
Sbjct: 222 DAILHGSGREDIDALMIGTGRPFVIEIVKPR--LRDISFEDMESAIGDYAKGSVEAVFDH 279
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++ G+A K+Y+ LV + ED + S ++ I Q+TP RV
Sbjct: 280 VSDRHEVETLKSGKA--HKKYSILVEVDGDFSSED---VKSALNCLKGATIDQRTPDRVS 334
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R++ + + IE + F + + AG YIKE + GD GRT P++ LG
Sbjct: 335 HRRADLVRKRKV--IDIECLGVEDGKFRIEVLGDAGLYIKELISGDEGRTEPNLSLNLGA 392
Query: 542 RAEILQLDVTDVK 554
A++ LDV V+
Sbjct: 393 DAKVTALDVIMVE 405
>gi|448363468|ref|ZP_21552068.1| pseudouridylate synthase [Natrialba asiatica DSM 12278]
gi|445646281|gb|ELY99270.1| pseudouridylate synthase [Natrialba asiatica DSM 12278]
Length = 456
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 122/262 (46%), Gaps = 31/262 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E + E S+E+ +
Sbjct: 183 PAFVYGRYRKLERDIPQTEWPCRECGGSGIQLGDGGEEPCDYCGGSGYLYETSVEQTVRP 242
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + +E +IN
Sbjct: 243 HVVDAMDGDEGTFHGAGREDVDARMLEEGRPFVLEVKRPRNRDPDPAA--LEREINEAAA 300
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQI 472
V V L++ + + R E + K+Y A V S P+ + F+ +L E +R +
Sbjct: 301 GSVEVAGLRLATYE--MVERVKEHDASKRYRADVEFSEPIDETAFE--DALAE-LRGTTV 355
Query: 473 LQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532
Q TP RV HRR+ L RE+ + + + +H + G Y+KE V D GRT
Sbjct: 356 EQDTPQRVDHRRAALTRERTVYDTDGDLSDPTRAEVRIH--GEGGLYVKELVSSDDGRTE 413
Query: 533 PSIGSILGCRAEILQLDVTDVK 554
PS+ +LG AE+ LDV V+
Sbjct: 414 PSLAGLLGTDAEVTALDVIGVE 435
>gi|219851210|ref|YP_002465642.1| pseudouridylate synthase [Methanosphaerula palustris E1-9c]
gi|219545469|gb|ACL15919.1| THUMP domain protein [Methanosphaerula palustris E1-9c]
Length = 409
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 29/256 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDS 362
PI+ GRY K+ R + QT W + S+EE++G ++ + +
Sbjct: 160 PIFIYGRYQKFERGIPQTHWDCRACHGSGCEACNFTGKQYADSVEELVGRPVMVLLKATG 219
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H AGREDID RM+G+GRPF+ E+ + ++L KE+E +N+ V V+ +
Sbjct: 220 AVLHGAGREDIDARMIGTGRPFILEVDTPQIRSADL--KELELAVNTAAAGRVAVEFDR- 276
Query: 423 VGSQGWTLMREGEAEK----QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPI 478
W L E E K K+Y LV + L +++ + + V I Q+TP
Sbjct: 277 -----WALRTEVETLKSNKAHKKYRILVEVEGDLSEDELNLALNRLQGV---TIHQRTPR 328
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ RE+ + ++I + + + + +AG YIKE + GD GRT PS+ I
Sbjct: 329 RVAHRRADKIRERDV--LEIRCLGIEEGRYSIEVLGEAGLYIKELISGDDGRTRPSLTEI 386
Query: 539 LGCRAEILQLDVTDVK 554
LG A++ LDV V+
Sbjct: 387 LGRPAQVTSLDVVLVE 402
>gi|149044809|gb|EDL97995.1| similar to RIKEN cDNA 4933435A13, isoform CRA_b [Rattus norvegicus]
Length = 393
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 168/387 (43%), Gaps = 80/387 (20%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLC-----------HVLGEQAD-------LH 93
LL C RCIFR G+ +P K LL ++ E D LH
Sbjct: 15 LLRSGTCPRCIFRFCGVDLPAPYKRPYKELLDDLQTFLESENRELILEGPDPPLKKIRLH 74
Query: 94 Q--------------------NISSVEPN---ICRSCLGILQFTYCGDKERVVENESACD 130
+ N+++ +P+ +C CLGILQ +C D
Sbjct: 75 EDGVDTLSANGEEGVSVTEDENMAATKPSNWRVCNVCLGILQ-GFCEK-----------D 122
Query: 131 FAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSS 190
F + + V+ G + S L VS PP + E+ L VK++ ++ R+ +
Sbjct: 123 FITEVCQKVEASGFEFTSVVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRN--DVVQ 180
Query: 191 TKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDA 248
K+A K+ +T+PL E L G S F + + ++ E ++ C
Sbjct: 181 LKEAYKW-ITHPLFSEELGVPTDGKSLFEVSVVFAHPET----------LQDCHFLGEVC 229
Query: 249 KNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-L 307
+C K+K SV + V+ K+ + +++ + P C L
Sbjct: 230 PDCFKPAKNK-------QSVFTRMAVL----KALSRIKEEDFLTQFPCPPDSPKTICTVL 278
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L + + +S+ F +
Sbjct: 279 EVECTHGAVFVAGRYNKYSRNLPQTPWIIDGERKMESSVEELISDHLLAVFKAESFNFSS 338
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREV 394
+GRED+DVR LG+GRPF E+ N V
Sbjct: 339 SGREDVDVRTLGNGRPFAVELLNPHRV 365
>gi|385806156|ref|YP_005842554.1| putative pseudouridine synthase PsuX [Fervidicoccus fontis Kam940]
gi|383796019|gb|AFH43102.1| putative pseudouridine synthase PsuX [Fervidicoccus fontis Kam940]
Length = 422
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 25/245 (10%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P++ GRY+K RN+SQ W D+++ + S++ ++ ++L G HA+GRED+D
Sbjct: 195 PLFIKGRYIKAGRNISQVEWF-DDDKKQQLSVKGML--SVLSEFYGGEVLLHASGREDVD 251
Query: 375 VRMLGSGRPFLFEIQN--AREVPSEL---LVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
VRMLG GRP + EI++ R VP LV + I LE K R K+++ +
Sbjct: 252 VRMLGWGRPMVVEIKDPRTRRVPLSYISWLVNKNPYGIFILEEKGKR-KDVREI------ 304
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTI-SSLKETVRCYQILQKTPIRVLHRRSPLE 488
+E +++K+K Y +V PL ++D TI LK V I Q+TP RVL RR +
Sbjct: 305 --KELDSKKRKIYRIVVAGDVPLNEKDADTIVRELKGKV----IEQRTPTRVLVRRKDVA 358
Query: 489 REKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
R K + + + +G + + T G YIKE + GD GRT P+ ILG + ++L
Sbjct: 359 RRKKVYDISLHAFSG---VLIGLIETDGGLYIKELISGDNGRTKPNFSEILGKSVQCIEL 415
Query: 549 DVTDV 553
DV V
Sbjct: 416 DVVKV 420
>gi|18977511|ref|NP_578868.1| pseudouridylate synthase [Pyrococcus furiosus DSM 3638]
gi|397651642|ref|YP_006492223.1| pseudouridylate synthase [Pyrococcus furiosus COM1]
gi|74536148|sp|Q8U1R6.1|PUS10_PYRFU RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|18893218|gb|AAL81263.1| hypothetical protein PF1139 [Pyrococcus furiosus DSM 3638]
gi|393189233|gb|AFN03931.1| pseudouridylate synthase [Pyrococcus furiosus COM1]
Length = 388
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 130/253 (51%), Gaps = 43/253 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA------ 367
PIY GRY K R + QT +E SI II CR FH
Sbjct: 158 NPIYVAGRYRKLIRGIPQTPAPGFKE-----SIATII-------CRAFKKHFHGKCIFKG 205
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRPF+ EI+ R+ L K+IE +IN ++ V V NL+ + +
Sbjct: 206 AGREDVDVRMLGNGRPFVVEIKRPRKRKVNL--KDIEEEIN--QSGKVEVLNLRFITPE- 260
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRV 480
EAE+ +K Y A+V++ + E+ + + SLK +I Q+TP RV
Sbjct: 261 -------EAERILTTRHRKVYEAIVYVKDGITKEEVEKVVKSLKNA----EIKQRTPRRV 309
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
L+ R+ L R + + +K E I ++F L + T G YIKE + GD GRT PS+ ILG
Sbjct: 310 LNSRADLVRVRKVYDVKGELI--DDKHFKLRLVTDGGLYIKELISGDRGRTTPSVSEILG 367
Query: 541 CRAEILQLDVTDV 553
A LDV +V
Sbjct: 368 KEAWCEILDVLEV 380
>gi|336121942|ref|YP_004576717.1| hypothetical protein Metok_0969 [Methanothermococcus okinawensis
IH1]
gi|334856463|gb|AEH06939.1| Conserved hypothetical protein CHP01213 [Methanothermococcus
okinawensis IH1]
Length = 475
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 25/253 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + QT W + S+EEII + + +G
Sbjct: 227 NPIFIKGRYKKLERGIPQTHWPCRNCKGKGCEKCNYTGKQYPTSVEEIIAEPFMKVFKGA 286
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGREDIDVRMLG+GRPF+ +I+ + ++L K+ NK +V+ L
Sbjct: 287 DEAFHGAGREDIDVRMLGNGRPFVLQIKEPKIRKADL------EKLKEEVNKSGKVEILD 340
Query: 422 I-VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ G + + + E K K Y A+V + D++ IS L + I Q+TPIRV
Sbjct: 341 LDYGVRKDVVFFKNEPHK-KTYLAVVECEEEISDDE---ISELVNKLENLTINQRTPIRV 396
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ L R + + ++I ++ F L + G YIKE + GD GRT+PS+ +L
Sbjct: 397 SHRRADLVRVRKVYKADAKRI--DAKTFELTLYCDGGLYIKELISGDEGRTSPSVSELLN 454
Query: 541 CRAEILQLDVTDV 553
+ LDV +V
Sbjct: 455 KKCICKMLDVLNV 467
>gi|349603998|gb|AEP99669.1| Putative tRNA pseudouridine synthase Pus10-like protein, partial
[Equus caballus]
Length = 127
Score = 116 bits (290), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/126 (46%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
M+EGE EK K Y+AL+W ++ +Q +D + V+ +I QKTP+RVLHRR R
Sbjct: 1 MKEGEEEKTKTYSALIWTNKAIQKKDI----DFQNDVKDLKIDQKTPLRVLHRRPLAVRT 56
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
+II+ M+ + +F L++ TQAGTYIKEFVHGD GRT P+IGS++ A+IL+LDV
Sbjct: 57 RIIHSMETRYV--DEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDV 114
Query: 551 TDVKMN 556
V ++
Sbjct: 115 ESVDVD 120
>gi|298675517|ref|YP_003727267.1| THUMP domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298288505|gb|ADI74471.1| THUMP domain protein [Methanohalobium evestigatum Z-7303]
Length = 430
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 23/253 (9%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE---------ERMGEA---SIEEIIGGNILPMCRGDSY 363
+Y GRY K R + QTRW E G+ S++E+I ++ +
Sbjct: 188 VYIYGRYRKLVRGIPQTRWPCRSCRGKGCQACEYTGKQYNESVDELISEQVINTLQCIDT 247
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
KFH +GREDID MLG GRPF+ I++ R +K++E IN N V + +L+ V
Sbjct: 248 KFHGSGREDIDALMLGDGRPFV--IESVRPKYRHFDIKKLEKDINEYTNGKVEITDLQTV 305
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQILQKTPIRVLH 482
++ A+ K Y V P+ +E ++ I++LK I Q+TP RV H
Sbjct: 306 SRDVIESLKSSNAD--KVYKLKVTFKEPVSEEKLKSAINNLKGV----DIEQRTPQRVSH 359
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR L R++ ++ +++ ++A + ++ + + G Y+KE + GD RT P++ I+G +
Sbjct: 360 RRGDLVRKRRVHDIELSELA--DNHAVITVNCEGGLYVKELISGDNRRTEPNLSDIIGTQ 417
Query: 543 AEILQLDVTDVKM 555
A++ +LDV V +
Sbjct: 418 ADVTELDVIKVNL 430
>gi|320100243|ref|YP_004175835.1| THUMP domain-containing protein [Desulfurococcus mucosus DSM 2162]
gi|319752595|gb|ADV64353.1| THUMP domain-containing protein [Desulfurococcus mucosus DSM 2162]
Length = 444
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P+ YLK R +S W + R S+++ + +I + K HAAGRED+
Sbjct: 209 PVLLKAVYLKKGRRISHVPWFTSNGARKYPESLQDFVRDSIASLFEAVDVKIHAAGREDV 268
Query: 374 DVRMLGSGRPFLFEIQNAREVPSEL-LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
D RMLG+GRP + EI R ++ L+ +I L+++ ++V + ++
Sbjct: 269 DARMLGTGRPVIIEILEPRFRSVDIGLLNQI------LDDQFIKVSVTGPASRRDIEAIK 322
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
EG ++K Y V +P+ +D + +S R + Q+TP+R+L R+ +RE+I
Sbjct: 323 EGSRRRKKIYRVSVLTGKPVTMKDLEELSGF---FRNRVVKQRTPLRILGRKK--DRERI 377
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+E +A + + F + G Y+KE VH D GRT P +LG A L+LDV
Sbjct: 378 RRVYSVEAVAVTPRVFEALIHCDGGLYVKELVHCDNGRTTPCFSEVLGSTAYPLELDVIH 437
Query: 553 VKMN 556
V+ N
Sbjct: 438 VEDN 441
>gi|91772911|ref|YP_565603.1| pseudouridylate synthase [Methanococcoides burtonii DSM 6242]
gi|91711926|gb|ABE51853.1| THUMP-domain containing protein [Methanococcoides burtonii DSM
6242]
Length = 428
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEER---------MGEA---SIEEIIGGNILPMCRGDSY 363
IY GRY K R + QTRW R G+ S++E+I ++ +
Sbjct: 186 IYILGRYRKMVRTIPQTRWPCRTCRGRGCETCNFTGKQYPESVDELIKDPVVEALKSKDT 245
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
KFH AGREDID RMLGSGRPF+ E +L ++E +IN + V+ L
Sbjct: 246 KFHGAGREDIDARMLGSGRPFVVEAVEPMLRTCDL--AKVEKEINERAGGKIEVEGLTFT 303
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
++ +A+ K Y V + ++ + S++ E + QI Q+TP RV HR
Sbjct: 304 PKATVETLKTVKAD--KVYKLKVTFKEQIPEDKLR--STINELI-GVQIQQRTPQRVSHR 358
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R++ ++ MK+ ++ + Y +L + + G Y+KE + D GRT PS+ +LG +A
Sbjct: 359 RADLVRKRTVHDMKLNEL--TDDYAMLEVHCEGGLYVKELISSDEGRTIPSLTGLLGSQA 416
Query: 544 EILQLDVTDVKM 555
+ +LDV V +
Sbjct: 417 FVTELDVVGVDI 428
>gi|126465674|ref|YP_001040783.1| pseudouridylate synthase [Staphylothermus marinus F1]
gi|126014497|gb|ABN69875.1| conserved hypothetical protein [Staphylothermus marinus F1]
Length = 425
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 31/247 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG----EASIEEIIGGNILPMCRGDSYKFHAAGR 370
PI F GRY K RN+S T W+ + G S+EE + + + HA+GR
Sbjct: 193 PILFEGRYWKRGRNISHTIWL---SKTGIKEYPYSLEEFFNDRLREIFESERIVLHASGR 249
Query: 371 EDIDVRMLGSGRPFLFEIQNAR------EVPSELLVKE-IESKINSLENKLVRVKNLKIV 423
ED+D RMLG+GRP + E++N R ++ +ELL IE++I ++ +++ LK
Sbjct: 250 EDVDARMLGTGRPMVIEVKNPRFRYVDMDLINELLRSTLIEAEITGYSSR-AKIEYLKGE 308
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
GS+ K+K Y LV+ + P+ + L+E R I Q+TP R+L R
Sbjct: 309 GSK-----------KRKAYKILVYTAEPIT---IDKLRMLEEEYRNRVIHQRTPKRILRR 354
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
+ R + + +K + + + F + G Y+KE VHGD GRT PS ILG +A
Sbjct: 355 KKDTLRIRRVYEIKTKML--HDKLFEAIVYCDGGLYVKELVHGDDGRTTPSFTDILGVQA 412
Query: 544 EILQLDV 550
L+LDV
Sbjct: 413 YPLELDV 419
>gi|14521053|ref|NP_126528.1| pseudouridylate synthase [Pyrococcus abyssi GE5]
gi|5458270|emb|CAB49759.1| Hypothetical protein, containing THUMP domain [Pyrococcus abyssi
GE5]
gi|380741616|tpe|CCE70250.1| TPA: RNA-binding protein, containing THUMP domain [Pyrococcus
abyssi GE5]
Length = 393
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 29/246 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PIY GRY K R + QT +E S+ II I F AGRED+
Sbjct: 157 NPIYIAGRYRKLVRGIPQTPAPGFDE-----SVATIIC-RIFKRYFNGKCIFKGAGREDV 210
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVR LG GRPF+ EI+N R+ +L K IE +INS ++ V V L+ + S+
Sbjct: 211 DVRTLGRGRPFVVEIKNPRKRNVDL--KIIEEEINS--SRKVEVLELRFINSE------- 259
Query: 434 GEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
EAEK +K Y ALV++ + E+ ++ + +++R I Q+TP RVL+ RS L
Sbjct: 260 -EAEKILTTRHRKLYEALVYVREGITREE---VTKVVKSLRGATIRQRTPRRVLNSRSDL 315
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R + + + E + +F L + T G YIKE + GD GRT PS+ ILG A
Sbjct: 316 VRIRKVYDAEGEYL--DEHHFKLKLLTDGGLYIKELISGDRGRTKPSVSEILGKEAWCEL 373
Query: 548 LDVTDV 553
LDV DV
Sbjct: 374 LDVLDV 379
>gi|448339614|ref|ZP_21528632.1| pseudouridylate synthase [Natrinema pallidum DSM 3751]
gi|445619603|gb|ELY73130.1| pseudouridylate synthase [Natrinema pallidum DSM 3751]
Length = 604
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 333 PAFVYGRYRKLERDIPQTEWPCRECGGSGSQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 392
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + + +E +IN
Sbjct: 393 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRFRDPD--PEALEREINDAAE 450
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQ 471
V V L++ + + R E + K Y A V + + F+T + L+ T
Sbjct: 451 GAVEVDGLRLATYE--MVERVKEHDASKHYRAAVEFGNAVDEAAFETALDELEGTT---- 504
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 505 VEQYTPERVDHRRAGLTRERTVYGIDGDLRSPTEAEVRLH--GEGGLYVKELISSDNGRT 562
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 563 EPSLAGLLETEAEVTALDVTGVE 585
>gi|332159279|ref|YP_004424558.1| hypothetical protein PNA2_1639 [Pyrococcus sp. NA2]
gi|331034742|gb|AEC52554.1| hypothetical protein PNA2_1639 [Pyrococcus sp. NA2]
Length = 391
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 127/249 (51%), Gaps = 35/249 (14%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PIY GRY K R + QT +E SI II + +G F AGRED+
Sbjct: 158 NPIYIAGRYRKLVRGIPQTPAPGFKE-----SIASIICRSFKRHFQGKCV-FKGAGREDV 211
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRMLG GRPF+ EI++ R L K +E +INS + + V NL+ +G
Sbjct: 212 DVRMLGRGRPFVVEIKSPRRRNVNL--KLLEDEINS--SGKIEVLNLRFIGPD------- 260
Query: 434 GEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
EAEK +K Y ALV++ + E+ + + + ++ +I Q+TP RVL+ R+
Sbjct: 261 -EAEKILTTRHKKIYEALVYVKDGITREEVEKVV---KALKNAEIRQRTPRRVLNSRA-- 314
Query: 488 EREKIINWMKIEKIAG---SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
I+ K+ +++G +F L + T G YIKE + GD GRT PS+ ILG A
Sbjct: 315 ---DIVRIRKVYEVSGELVDENHFKLRLLTDGGLYIKELISGDNGRTKPSVSEILGKEAW 371
Query: 545 ILQLDVTDV 553
LDV DV
Sbjct: 372 CELLDVLDV 380
>gi|448538342|ref|ZP_21622848.1| pseudouridylate synthase [Halorubrum hochstenium ATCC 700873]
gi|445701424|gb|ELZ53406.1| pseudouridylate synthase [Halorubrum hochstenium ATCC 700873]
Length = 429
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 25/253 (9%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKMERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ EI+ R + +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVVEIEEPRR--RRVDTDRLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V D D ++ + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAGKRYRAQVSFD---ADVDPDALADTVAELEGATVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E G + + + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASMTRERDVYEATAEPEDGDPRRATVEIRGEGGLYIKELISGDEGRTEPSLAGLLGV 402
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 403 GAEVTALDVLAVE 415
>gi|448344671|ref|ZP_21533576.1| pseudouridylate synthase [Natrinema altunense JCM 12890]
gi|445637578|gb|ELY90727.1| pseudouridylate synthase [Natrinema altunense JCM 12890]
Length = 449
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 33/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGSQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ GD FH AGRED+D RML GRPF+ E++ R + + +E +IN
Sbjct: 238 HVVDAMDGDEGTFHGAGREDVDARMLEGGRPFVLEVKRPRFRDPD--PEALEREINDAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT-ISSLKETVRCYQ 471
V V+ L++ + + R E + K+Y A V + + F+T + L+ T
Sbjct: 296 GAVEVEGLRLATYE--MVERVKEHDASKRYRADVEFGDAVDEAAFETALDELEGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + LH + G Y+KE + D GRT
Sbjct: 350 VDQYTPERVDHRRAGLTRERTVYGIDGDLRSPTEAEVRLH--GEGGLYVKELISSDNGRT 407
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 408 EPSLAGLLETEAEVTALDVTGVE 430
>gi|449328805|gb|AGE95081.1| hypothetical protein ECU08_1530 [Encephalitozoon cuniculi]
Length = 310
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
+E + +P+Y G Y+K RN++QT + S+ + I D F
Sbjct: 66 VEIVVQNSPMYIYGEYIKMDRNMTQTPLTVGGRLKCNRSVSDF-KIQIKEFFSADDVVFI 124
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNARE-VPSELLVKEIESKINSLENKLVRVKNLKIVGS 425
AGRED DVRM+ GRPFL ++N R + E L + ++ +KNL +V
Sbjct: 125 PAGREDFDVRMV-EGRPFLLTVKNPRRNLGFERLRLTLYGGLD--------IKNLCVVRK 175
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ ++ +GE + K Y+A + RPL + + Y++ Q+TP+RVLHRR+
Sbjct: 176 ECKDMIFKGEGQSSKIYSAFLCCRRPLILQ------------KNYEVRQRTPLRVLHRRA 223
Query: 486 PLEREKIINWMKIEKI-AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
L R K + + EK+ A Y+ + + AGTYIKEFVHGDLGRT PS+ S +
Sbjct: 224 NLTRIKEVCILGHEKMEADGWIYYRVVLEASAGTYIKEFVHGDLGRTTPSLSSKENY-CD 282
Query: 545 ILQLDVTDVK 554
+L+LDV VK
Sbjct: 283 LLELDVLRVK 292
>gi|224005168|ref|XP_002296235.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209586267|gb|ACI64952.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1274
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 145/347 (41%), Gaps = 98/347 (28%)
Query: 305 CRLECLCFRTPIYFGGRYLKYSRNVSQTRWII--------DEERM---GEASIEEIIGGN 353
C + +R P + G Y K R+VSQT + + D+ +M G +S+EE I
Sbjct: 930 CSVFTTVWRRPFHIHGMYTKSRRDVSQTPFYVPGLPKSTSDKSKMIRKGTSSVEEEICSP 989
Query: 354 ILPMCRGDSY-------------------KFHAAGREDIDVRMLG--------------- 379
+ C G S+ KFHA+GRED+DVRML
Sbjct: 990 LSLSCGGISHRNNATQNEAKGNDVMFGLCKFHASGREDMDVRMLLPPPSIASYSAKSNIV 1049
Query: 380 -SGRPFLFEIQNAREVPSELLVKEIESKIN------------------------------ 408
+GRPF+ E+ +A +P++ + IN
Sbjct: 1050 ITGRPFVCEVFDAHRLPTQSDLDRAVHAINGTVDEGTEDGIYTKSEVESNEKGWPETAVD 1109
Query: 409 ---SLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDED--------- 456
S V V LK V S ++ ++ K K YA +V S P+ +D
Sbjct: 1110 RNRSYGENPVSVSPLKYVPSSAFSGLQSETENKMKYYACVVHSSIPITSDDELVEKLGCL 1169
Query: 457 -FQTISSLKETVRC-------YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYF 508
+ + E C +I Q TP+RVLHRRS R + + + +I +F
Sbjct: 1170 RWNHEDDVDEKSGCDYNCNYPLEIHQSTPLRVLHRRSSDVRVRHVISLSACRI--DDHWF 1227
Query: 509 LLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
L + T AGTY+KEFVHGD GR+ PS+ S++G R +I +LD + M
Sbjct: 1228 RLRLSTSAGTYVKEFVHGDCGRSYPSVASMIGGRVDITELDCEGIAM 1274
>gi|19173478|ref|NP_597281.1| similarity to HYPOTHETICAL PROTEIN Y041_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19171067|emb|CAD26457.1| similarity to HYPOTHETICAL PROTEIN Y041_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 310
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 307 LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFH 366
+E + +P+Y G Y+K RN++QT + S+ + I D F
Sbjct: 66 VEIVVQNSPMYIYGEYIKMDRNMTQTPLTVGGRLKCNRSVSDF-KIQIKEFFSADDVVFI 124
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNARE-VPSELLVKEIESKINSLENKLVRVKNLKIVGS 425
AGRED DVRM+ GRPFL ++N R + E L + ++ +KNL +V
Sbjct: 125 PAGREDFDVRMV-EGRPFLLTVKNPRRNLGFERLRLTLYGGLD--------IKNLCVVRK 175
Query: 426 QGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
+ ++ +GE + K Y+A + RPL + + Y++ Q+TP+RVLHRR+
Sbjct: 176 ECKDMIFKGEGQSSKIYSAFLCCRRPLVLQ------------KNYKVRQRTPLRVLHRRA 223
Query: 486 PLEREKIINWMKIEKI-AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
L R K + + EK+ A Y+ + + AGTYIKEFVHGDLGRT PS+ S +
Sbjct: 224 NLTRIKEVCILGHEKMEADGWIYYRVVLEASAGTYIKEFVHGDLGRTAPSLSSKENY-CD 282
Query: 545 ILQLDVTDVK 554
+L+LDV VK
Sbjct: 283 LLELDVLRVK 292
>gi|448566778|ref|ZP_21637033.1| pseudouridylate synthase [Haloferax prahovense DSM 18310]
gi|445713367|gb|ELZ65144.1| pseudouridylate synthase [Haloferax prahovense DSM 18310]
Length = 427
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + ++ + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVMDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RSIDVEQLEGDINAMAEGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + DED Q ++L E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTDEDLQ--AALDELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + +++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDARHATVEVHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|315427554|dbj|BAJ49154.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 439
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMC 358
F P++ GRYLK+SR + Q+ W + R+ S+ E++G +
Sbjct: 190 AFPNPVFISGRYLKHSRELPQSPWHCKKCWGRGCQECGYTGRLYPTSVAELVGEPAKTLY 249
Query: 359 RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVK 418
+ YKFHAAGRED+D + G GRPF+ E++ R + + +++ IN+ LV
Sbjct: 250 QAADYKFHAAGREDVDALVEGEGRPFILELKRPRR--RNIPLDQVQQHINTNTQGLV--- 304
Query: 419 NLKIVGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDFQ--TISSLKETVRCYQILQK 475
V + +T R+ K AA ++ + + D D + L+ R + Q
Sbjct: 305 ---TVYLEAYTTRRQVRQIKLSASTAAKTYLLKAVYDADLNPDKVKELETRFRNTVVEQL 361
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVL RR+ R K + ++ E + S+ L + Q G Y+KE V GD GRT PS
Sbjct: 362 TPLRVLRRRAEKLRRKTVYSVEAELV--DSRTALFRINCQGGLYVKELVTGDGGRTKPSF 419
Query: 536 GSILGCRAEILQLDVTDVK 554
+LG ++L V V+
Sbjct: 420 ADVLGLVPIAMELTVLKVE 438
>gi|448318841|ref|ZP_21508352.1| pseudouridylate synthase [Natronococcus jeotgali DSM 18795]
gi|445597680|gb|ELY51753.1| pseudouridylate synthase [Natronococcus jeotgali DSM 18795]
Length = 460
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 31/263 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGEDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G++ FH AGRED+D RML GRPF+ E++ + + +E +IN
Sbjct: 238 HVVAAMDGEAGTFHGAGREDVDARMLEDGRPFVLEVKRPKRRDPDPAA--LEREINDAAE 295
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQ 471
V V L++ + ++E +A K+Y A V + P+ + D + ++ L T
Sbjct: 296 GAVEVDGLRLATYEMVERVKEHDA--SKRYRADVAFADPVGEADLEAALAELSGTT---- 349
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
+ Q TP RV HRR+ L RE+ + + + + + + G Y+KE + D GRT
Sbjct: 350 VEQYTPQRVDHRRAGLTRERTVYEIDGDLDPEDPSRGEIRLHGEGGLYVKELISSDEGRT 409
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +L AE+ LDVT V+
Sbjct: 410 EPSLAGLLETDAEVTALDVTGVE 432
>gi|315425556|dbj|BAJ47217.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484392|dbj|BAJ50046.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 439
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMC 358
F P++ GRYLK+SR + Q+ W + R+ S+ E++G +
Sbjct: 190 AFPNPVFISGRYLKHSRELPQSPWHCKKCWGRGCQECGYTGRLYPTSVAELVGEPAKTLY 249
Query: 359 RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVK 418
+ YKFHAAGRED+D + G GRPF+ E++ R + + +++ IN+ LV
Sbjct: 250 QAADYKFHAAGREDVDALVEGEGRPFILELKRPRR--RNIPLDQVQQHINTNTQGLV--- 304
Query: 419 NLKIVGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDFQ--TISSLKETVRCYQILQK 475
V + +T R+ K AA ++ + + D D + L+ R + Q
Sbjct: 305 ---TVYLEAYTTRRQVRQIKLAASTAAKTYLLKAVYDADLNPDKVKELETRFRNTVVEQL 361
Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
TP+RVL RR+ R K + ++ E + S+ L + Q G Y+KE V GD GRT PS
Sbjct: 362 TPLRVLRRRAEKLRRKTVYSVEAELV--DSRTALFRINCQGGLYVKELVTGDGGRTKPSF 419
Query: 536 GSILGCRAEILQLDVTDVK 554
+LG ++L V V+
Sbjct: 420 ADVLGLVPIAMELTVLKVE 438
>gi|433637102|ref|YP_007282862.1| TIGR01213 family protein [Halovivax ruber XH-70]
gi|433288906|gb|AGB14729.1| TIGR01213 family protein [Halovivax ruber XH-70]
Length = 493
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 51/281 (18%)
Query: 315 PIYFGGRYLKYSRNVSQTRW-----------IIDEER-----------MGEASIEEIIGG 352
P + GRY K R++ QT W + D+ + + SIEE +
Sbjct: 180 PAFVYGRYRKIERDIPQTEWPCRECGGSGTQLTDDGEEPCDYCGGSGYLYDTSIEETVRP 239
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+++ G FH AGRED+D RMLG+GRPF+ E+++ + V+ +E++IN
Sbjct: 240 HVVAAMDGREGTFHGAGREDVDARMLGTGRPFVLEVKHPHHRTPD--VEALEAEINEAAA 297
Query: 413 KLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKET---VRC 469
V V+ L++ + R E + K+Y A V P+ + +SL E +
Sbjct: 298 GAVEVEGLRLATHD--MVERVKEHDASKRYRAAVQFDEPV------SATSLDEAFAELEG 349
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMK-----IEKIAGSSQYFLL-----------HMC 513
+ Q TP RV HRR+ L RE+ + + E +A S + LL +
Sbjct: 350 TTVEQYTPQRVDHRRAELTRERTVYAIDGEPGITETMADSVETELLEPEDVDTTATIEVH 409
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
G YIKE + GD GRT PS+ +L AE+ LDV V+
Sbjct: 410 GAGGLYIKELISGDDGRTEPSVAGLLDTGAEVAALDVLAVE 450
>gi|154151415|ref|YP_001405033.1| pseudouridylate synthase [Methanoregula boonei 6A8]
gi|153999967|gb|ABS56390.1| conserved hypothetical protein [Methanoregula boonei 6A8]
Length = 410
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 33/257 (12%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEA--------------SIEEIIGGNILPMCRGD 361
++F GRY K+ R + QT W + G A S+EE+IG ++ + +
Sbjct: 163 LFFYGRYQKFERGIPQTHW--NCRACGGAGCEKCNYTGKQYADSVEELIGRPVIELFDAE 220
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
+ H AGREDID R +G+GRPF+ EI R+ +L +E++IN V V +
Sbjct: 221 NAVLHGAGREDIDARCVGTGRPFILEIVAPRKRSVDLAA--VEAEINRSAEGRVSVALSR 278
Query: 422 IVGSQGWTLMREGEAEK----QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
W+ E E K K+Y LV + + E +++ T++ I Q+TP
Sbjct: 279 ------WSDRSEVETLKSSKAHKKYRILVEVDGQVPAE---LLANALNTLKGVTIQQRTP 329
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
RV HRR+ RE+ + + IE + F+L + +AG YIKE + GD GRT PS+
Sbjct: 330 ERVAHRRADKIRERKV--LDIEYVGEQDGKFILEVLGEAGLYIKELISGDQGRTIPSLAE 387
Query: 538 ILGCRAEILQLDVTDVK 554
IL A + LDV V+
Sbjct: 388 ILQRPARVTSLDVVQVE 404
>gi|435853663|ref|YP_007314982.1| TIGR01213 family protein [Halobacteroides halobius DSM 5150]
gi|433670074|gb|AGB40889.1| TIGR01213 family protein [Halobacteroides halobius DSM 5150]
Length = 390
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
G+Y KYSR + QT W ++ SI+EI + ++ KFH AGRED DVR G
Sbjct: 173 GKYNKYSRELFQTEWSYLKD-----SIQEITEVPFIQYTEAEASKFHGAGREDADVRCFG 227
Query: 380 SGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQ 439
R F+ E+ N ++ L +++ ++N + K V V NLKI + ++E +K
Sbjct: 228 K-REFVLELVNPKKRKVNLT--QLQKQLNQSQAK-VEVFNLKITDREKIKELKEKRVDKT 283
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIE 499
Y ALV + + E+ T+ + T+ QKTP RV R L R++ I KIE
Sbjct: 284 --YRALVTLDQKTTQEELVTLEQIIGTIE-----QKTPQRVKKSRGNLVRKREI--YKIE 334
Query: 500 KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+ + F L + +AG YIKE + D GRT PS+ ILGC+A+ +LDV D+
Sbjct: 335 PELITKRKFELIIKAEAGAYIKELISSDEGRTTPSVAEILGCQAKCTKLDVIDI 388
>gi|448304709|ref|ZP_21494645.1| pseudouridylate synthase [Natronorubrum sulfidifaciens JCM 14089]
gi|445590090|gb|ELY44311.1| pseudouridylate synthase [Natronorubrum sulfidifaciens JCM 14089]
Length = 459
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 37/265 (13%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M E S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYETSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQ--NAREV-PSELLVKEIESKINS 409
+++ G+ FH AGRED+D ML GRPF+ E+ N R+ P+EL E +IN+
Sbjct: 238 HVVEAMDGEEGTFHGAGREDVDALMLEGGRPFVLEVTRPNVRDPDPAEL-----EREINA 292
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
V V+ L++ + ++E +A KQY A V + P+++ DF+ + E +
Sbjct: 293 AAAGAVEVEGLRLATYEMVERVKEHDA--SKQYRADVEFADPIEEADFEAV---LEKLTG 347
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q TP RV HRR+ L RE+ + + E + + +H + G YIKE + D G
Sbjct: 348 TTVDQDTPQRVDHRRASLTRERTVYDIDGELLEPTRAEVRVH--GEGGLYIKELISSDEG 405
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +L AE+ LDV V+
Sbjct: 406 RTVPSLAGLLETDAEVTALDVLGVE 430
>gi|354610230|ref|ZP_09028186.1| Conserved hypothetical protein CHP01213 [Halobacterium sp. DL1]
gi|353195050|gb|EHB60552.1| Conserved hypothetical protein CHP01213 [Halobacterium sp. DL1]
Length = 426
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 126/253 (49%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRW----------IIDE-----ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R + QT+W ++D + G S+E++ ++ G
Sbjct: 170 GRYRKLERGIPQTKWPCSDCNGTGTLVDSPCPHCDATGFLYPESVEQLTAPPVVEAMDGG 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGREDID MLG+GRPF+ E+Q ++ + + +E IN V V+ ++
Sbjct: 230 EASFHGAGREDIDALMLGTGRPFVVEVQRPQDRHPD--AEALEEAINEYAEGKVEVEGVR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + +K+Y A V P+ ++DF+ ++L E + I Q+TP RV
Sbjct: 288 LAAYD--MVERVKELDAKKRYRAQVEFDAPVSEDDFE--AALAE-LDGATIEQETPQRVS 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + + E+ + ++ + + G YIKE V D GRT PS+ +LG
Sbjct: 343 HRRAELVRTREVYDIDGEQT--DDTHAIVEIEGEGGLYIKELVSSDDGRTVPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 EATVTALDVVAVE 413
>gi|12849680|dbj|BAB28439.1| unnamed protein product [Mus musculus]
Length = 371
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 135/296 (45%), Gaps = 41/296 (13%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K SV + V+ K
Sbjct: 211 VFAHSETA----------EDCHFLGEVCRDCFKPAKNK-------QSVFTRMAVLKALSK 253
Query: 281 -SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
G P P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 254 IKEEGFLGQFPC-----PPNLPKTVCTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDG 308
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREV 394
ER E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V
Sbjct: 309 ERKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRV 364
>gi|448308425|ref|ZP_21498302.1| pseudouridylate synthase [Natronorubrum bangense JCM 10635]
gi|445593713|gb|ELY47882.1| pseudouridylate synthase [Natronorubrum bangense JCM 10635]
Length = 459
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 37/265 (13%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGG 352
P + GRY K R++ QT W E M + S+E+++
Sbjct: 178 PAFVYGRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRP 237
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQ--NAREV-PSELLVKEIESKINS 409
+++ +G+ FH AGRED+D ML GRPF+ E+ N R+ P+EL E +IN+
Sbjct: 238 HVVDAMQGEEGTFHGAGREDVDALMLEEGRPFVLEVTRPNVRDPDPAEL-----EREINA 292
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
V V+ L++ + ++E +A KQY A V + P+++ DF+ + E +
Sbjct: 293 AAAGAVEVEGLRLATYEMVERVKEHDA--SKQYRADVEFADPIEEADFEAV---LEKLTG 347
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q TP RV HRR+ L RE+ + + E + + +H + G YIKE + D G
Sbjct: 348 TTVDQDTPQRVDHRRASLTRERTVYDIDGELLEPTRAEVRVH--GEGGLYIKELISSDEG 405
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +L AE+ LDV V+
Sbjct: 406 RTVPSLAGLLETDAEVTALDVLGVE 430
>gi|448432321|ref|ZP_21585457.1| pseudouridylate synthase [Halorubrum tebenquichense DSM 14210]
gi|445687205|gb|ELZ39497.1| pseudouridylate synthase [Halorubrum tebenquichense DSM 14210]
Length = 429
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 116/253 (45%), Gaps = 25/253 (9%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ EI+ R + +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEIEEPRR--RRVDTDRLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V D D ++ + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAGKRYRAQVSFD---ADVDPDALADAVAELEGATVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E G + + + + G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASMTRERDVYEATAEPDDGDPRRATVEIRGEGGLYIKELISSDEGRTEPSLAGLLGV 402
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 403 GAEVTALDVLTVE 415
>gi|150401676|ref|YP_001325442.1| pseudouridylate synthase [Methanococcus aeolicus Nankai-3]
gi|150014379|gb|ABR56830.1| THUMP domain protein [Methanococcus aeolicus Nankai-3]
Length = 481
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 22/250 (8%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDSY 363
I+ GRY K R + Q+ W R S+EEII + +G
Sbjct: 233 IFIKGRYNKLIRGIPQSHWHCRSCRGKGCEKCDWTGKQYPTSVEEIIAEPFMKAFKGKEE 292
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
FH AGREDIDVRMLG+GRPF+ +I+ + ++L K + ++N ++ V + NL+
Sbjct: 293 AFHGAGREDIDVRMLGNGRPFVLQIKEPKIRKADL--KPLMEEVN--KSGKVEIHNLE-Y 347
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
G + + + EA + K Y A V + +++ I L E ++ I Q+TP RV HR
Sbjct: 348 GVRKDIIFFKNEAHR-KTYLAHVECEDEITEDE---IKQLVEQMQNLTINQRTPQRVSHR 403
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
R+ L R + + + + KI S ++ L C G YIKE +HGD GRT PS+ +L +
Sbjct: 404 RADLIRVRNVYAVSLNKIINSKEFELKIYC-DGGLYIKELIHGDEGRTIPSVSELLNKKC 462
Query: 544 EILQLDVTDV 553
LDV DV
Sbjct: 463 ICKFLDVWDV 472
>gi|288931842|ref|YP_003435902.1| hypothetical protein Ferp_1476 [Ferroglobus placidus DSM 10642]
gi|288894090|gb|ADC65627.1| conserved hypothetical protein [Ferroglobus placidus DSM 10642]
Length = 363
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 24/249 (9%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID--EERMGEA---------SIEEIIGGNILPMCRGDSY 363
P+Y GRY K R ++QTRW+ + R EA S+E+II L + G++
Sbjct: 121 PVYIFGRYKKRVRYLAQTRWLCSFCKGRGCEACNFTGKKYLSVEDIIITPALEVFEGENA 180
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GRED+D RMLG+GRPF+ E+ ++ +L KE+E KIN + +K++
Sbjct: 181 FLHGSGREDVDARMLGNGRPFVLEVVKPKKRKVDL--KELERKINEGSGAV----EVKLL 234
Query: 424 G-SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
G + + R A +K+Y ALV + + + + +TV I Q+TP RV H
Sbjct: 235 GYATHKDVERIKSASYKKRYRALVVFEKEVDERTLKDALEKLKTV----IHQRTPKRVEH 290
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ R K + K+ G+ ++ + + G YIKE V GD GRT PS+ ++G
Sbjct: 291 RRADKVRVKRVYDTKLLLHRGNKA--VIEIEAEGGLYIKELVSGDEGRTKPSLAELIGVN 348
Query: 543 AEILQLDVT 551
+ +LDV
Sbjct: 349 CYVDKLDVV 357
>gi|448593309|ref|ZP_21652307.1| pseudouridylate synthase [Haloferax elongans ATCC BAA-1513]
gi|445730217|gb|ELZ81807.1| pseudouridylate synthase [Haloferax elongans ATCC BAA-1513]
Length = 427
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECDGSGYQGKEPCDYCGGSGYLYEHSVEGFVAPVAMDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ E+ R + V+ +E +N++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEVMEPRR--RNIDVERLEGDVNAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + DED Q ++L E I Q TP RV
Sbjct: 288 LAAYD--MVERVKKLDASKEYRAAVEFDDDVTDEDLQ--AALDELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E + + + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRQVYDATGE--LEDAHHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 DAVVTALDVIAVE 413
>gi|409729989|ref|ZP_11271600.1| pseudouridylate synthase [Halococcus hamelinensis 100A6]
gi|448722294|ref|ZP_21704832.1| pseudouridylate synthase [Halococcus hamelinensis 100A6]
gi|445790005|gb|EMA40678.1| pseudouridylate synthase [Halococcus hamelinensis 100A6]
Length = 438
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 121/265 (45%), Gaps = 36/265 (13%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK---------- 364
P + GRY K R++ QT W E G + G C G Y
Sbjct: 167 PAFVYGRYRKLERDIPQTEWPCRECGGGGTQMAADGGTEPCEHCGGSGYLYDESVEQLTA 226
Query: 365 -------------FHAAGREDIDVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINS 409
FH AGRED+D MLG+GRPF+ E+++ R V +E L E++IN
Sbjct: 227 PVVREAMDGSESLFHGAGREDVDAVMLGTGRPFVIEVKHPQHRAVDTEAL----ETEINE 282
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
+ V+ L+ + + R E + K Y+ V + P+++ D + + + +R
Sbjct: 283 FADGKAEVEGLRRATHE--MVERVKELDANKTYSMTVEFADPVEESDLE---AALDDLRG 337
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
+ Q TP RV HRR+ L RE+ + + E + + + G Y+KE + GD G
Sbjct: 338 ATVEQYTPQRVDHRRAALTREREV--YETEGALDDPYHATVEVKGAGGLYVKELMSGDDG 395
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +LG +E+ LDV V+
Sbjct: 396 RTEPSLAGLLGIESEVTALDVIAVE 420
>gi|448610386|ref|ZP_21661132.1| pseudouridylate synthase [Haloferax mucosum ATCC BAA-1512]
gi|445745010|gb|ELZ96480.1| pseudouridylate synthase [Haloferax mucosum ATCC BAA-1512]
Length = 427
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E + E S+E + ++ + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECDGSGYQGKEPCDYCGGSGYLYEDSVEGFVAPVVMDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RNVDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + KQY A V + DE Q ++L E + + Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKQYRAAVEFDADVTDEALQ--AALDE-LTGVTVEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E +++ + + + G YIKE + GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHVYDATGE--LEDARHGTVEIHGEGGLYIKELISGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|322372192|ref|ZP_08046733.1| putative pseudouridylate synthase [Haladaptatus paucihalophilus
DX253]
gi|320548201|gb|EFW89874.1| putative pseudouridylate synthase [Haladaptatus paucihalophilus
DX253]
Length = 431
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 121/266 (45%), Gaps = 38/266 (14%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE---------ERMGEA--------------SIEEIIG 351
P + GRY K R++ QT+W E E GE S+E++
Sbjct: 164 PAFVFGRYRKLERDIPQTKWPCRECGGSGKQLAEGGGEEPCDYCGGSGFLYDESVEQLTT 223
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE 411
+L G FH AGRED+D MLG+GRPF E++ R + E+E +IN
Sbjct: 224 PPVLDAMEGTEAIFHGAGREDVDALMLGTGRPFAIEVKKPRRRNPD--TDELEREINEFA 281
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVR--- 468
+ V+ L++ + R E + K Y A V P+ T S+L E +
Sbjct: 282 DGKAEVEGLRLATHD--MVERVKELDASKTYRAQVEFDDPV------TESALAEAMAELD 333
Query: 469 CYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDL 528
+ Q TP RV HRR+ L R + + I+ ++ + + Q G YIKE V GD
Sbjct: 334 GATVEQFTPNRVDHRRASLTRVREV--YDIDGHLDDERHGEVEIHGQGGLYIKELVSGDE 391
Query: 529 GRTNPSIGSILGCRAEILQLDVTDVK 554
GRT PS+ +LG AE+ LDV V+
Sbjct: 392 GRTEPSLAGLLGVGAEVTALDVVAVE 417
>gi|296241778|ref|YP_003649265.1| pseudouridylate synthase [Thermosphaera aggregans DSM 11486]
gi|332319822|sp|D5TZL3.1|PUS10_THEAM RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|296094362|gb|ADG90313.1| pseudouridylate synthase [Thermosphaera aggregans DSM 11486]
Length = 441
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 15/240 (6%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEE-RMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
TP+ G Y K RN+S W+ + R SI+E + + + K HAAGRED
Sbjct: 209 TPVLLKGVYNKRGRNISHVPWLAKQGGRKYPLSIQEYLESRLADPFKAKKVKIHAAGRED 268
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVK--EIESKINSLENKLVRVKNLKIVGSQGWTL 430
+D R LG GRP + EI E LV+ +IE + + LV V+ K + L
Sbjct: 269 VDARTLGPGRPLVIEI-------VEPLVRSYDIEDVNKLIRSDLVEVRVHKPASRRDIEL 321
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
+++ EK+K Y LV S P+ + + + + I Q+TPIR+L R+ + R
Sbjct: 322 LKQTSREKRKVYRLLVVSSTPISEAQLNELEAYFNDI---AIQQRTPIRILTRKKDVLRV 378
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
+ + ++ + ++ +S L++ C G Y+KE VH D GRTNP SIL + ++LDV
Sbjct: 379 RKVYEVRTKPVSSTSFEALVY-C-DGGLYVKELVHCDQGRTNPCFASILNTELKPVELDV 436
>gi|389847512|ref|YP_006349751.1| hypothetical protein HFX_2072 [Haloferax mediterranei ATCC 33500]
gi|448617290|ref|ZP_21665945.1| pseudouridylate synthase [Haloferax mediterranei ATCC 33500]
gi|388244818|gb|AFK19764.1| hypothetical protein HFX_2072 [Haloferax mediterranei ATCC 33500]
gi|445748639|gb|EMA00086.1| pseudouridylate synthase [Haloferax mediterranei ATCC 33500]
Length = 427
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E + E S+E + ++ + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVMDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + +++E IN++ + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RNVDAEQLEGDINAMAEGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + KQY A V + +ED Q ++L E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKQYRAAVEFDDDVTNEDLQ--AALDELTGA-TIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + ++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASLTRTRHV--YDATGDLEDERHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|383320659|ref|YP_005381500.1| hypothetical protein Mtc_2247 [Methanocella conradii HZ254]
gi|379322029|gb|AFD00982.1| TIGR01213 family protein [Methanocella conradii HZ254]
Length = 458
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 27/258 (10%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPM 357
++ GRY KY R++ QTRW E +M S+EE I +
Sbjct: 187 LFIYGRYNKYVRDIPQTRWPCRECGGKGVKGEAICQHCGGTGKMYPTSVEEQISHEVKLA 246
Query: 358 CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRV 417
+ H AGREDID RMLG GRPF+ E+ + R +L + +E +IN+ + V V
Sbjct: 247 FNAEDGVLHGAGREDIDARMLGEGRPFIMEVVSPRTRWVDL--ESLEQRINAYASGRVSV 304
Query: 418 KNLKIVGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKT 476
L V + +RE ++ K K Y V + L +T+ S + I Q+T
Sbjct: 305 SGLHYVDK---SAVREIKSIKPDKTYRLKVIYNDALS---IETLKSSLAILSGAAICQRT 358
Query: 477 PIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIG 536
P RVLHRR+ LER + + + +E++ + +YF++ + + G Y+KE V GD GRT+PS+
Sbjct: 359 PERVLHRRADLERRRRVYDITLEELNEAEKYFIITVRCEGGLYVKELVSGDKGRTSPSLS 418
Query: 537 SILGCRAEILQLDVTDVK 554
++LG + +LDV V+
Sbjct: 419 ALLGRECRVAELDVISVE 436
>gi|14590810|ref|NP_142882.1| pseudouridylate synthase [Pyrococcus horikoshii OT3]
gi|3257376|dbj|BAA30059.1| 407aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 407
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 124/244 (50%), Gaps = 25/244 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PIY GRY K R + QT EE SI II RG F AGRED+
Sbjct: 174 NPIYVAGRYRKLVRGIPQTPAPGFEE-----SIATIICRVFKKNFRGKCI-FKGAGREDV 227
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVR LG GRPF+ EI+ R+ +L K IE +INS + V V LK + + E
Sbjct: 228 DVRTLGRGRPFVVEIKKPRKRKVDL--KLIEEEINS--SGKVEVLELKFITPE------E 277
Query: 434 GE----AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLER 489
E A +K Y ALV++ + E+ + + ++++ +I Q+TP RVL+ R+ + R
Sbjct: 278 SEKILTARHKKIYEALVYVKDGVSAEEVEKVV---KSLKGSEIKQRTPRRVLNSRADIVR 334
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
+ + + E I +F L + T G YIKE + GD GRT PS+ ILG A LD
Sbjct: 335 VRRVYNVSGEYI--DEHHFKLKLVTDGGLYIKELISGDKGRTKPSVSEILGKEAWCEILD 392
Query: 550 VTDV 553
V DV
Sbjct: 393 VLDV 396
>gi|385804568|ref|YP_005840968.1| tRNA pseudouridine synthase [Haloquadratum walsbyi C23]
gi|339730060|emb|CCC41371.1| tRNA pseudouridine synthase [Haloquadratum walsbyi C23]
Length = 445
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 27/252 (10%)
Query: 320 GRYLKYSRNVSQTRW------------IIDEERMG------EASIEEIIGGNILPMCRGD 361
GRY K +R + QT W I E G + S+EE+ + + G
Sbjct: 172 GRYRKLTRGIPQTEWPCSACDGSGYQGSIACETCGGSGYLYDDSVEELTAPVVCDVMDGT 231
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D M+G+GRPF+ E+ R + + +E IN+ + V V+NL+
Sbjct: 232 DSTFHGAGREDVDALMIGTGRPFVIEVFEPRR--RNIDIDRLEGDINAFADGAVEVENLR 289
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E E K+Y A V P+ DF T + I Q TP RV
Sbjct: 290 LANYE--MVERVKEIEASKRYRAAVVFDAPINVTDFDTALTTLTDT---TIEQYTPNRVD 344
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + ++ + + + G Y+KE + GD GRT PS+ +L
Sbjct: 345 HRRAAITRTRTV--YDVDGTLDDPTHATVEIHGAGGLYVKELISGDDGRTEPSLAGLLDT 402
Query: 542 RAEILQLDVTDV 553
A + LDV V
Sbjct: 403 GATVTDLDVLGV 414
>gi|15790852|ref|NP_280676.1| pseudouridylate synthase [Halobacterium sp. NRC-1]
gi|169236598|ref|YP_001689798.1| pseudouridylate synthase [Halobacterium salinarum R1]
gi|10581415|gb|AAG20156.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727664|emb|CAP14452.1| tRNA pseudouridine synthase [Halobacterium salinarum R1]
Length = 425
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 120/253 (47%), Gaps = 29/253 (11%)
Query: 320 GRYLKYSRNVSQTRW----------IIDE-----ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R + QT+W ++D + G S+E++ ++ G
Sbjct: 169 GRYRKLERGIPQTKWPCSDCNGSGTLVDSPCPHCDGTGFLYPESVEQLTAPPVVDAMGGT 228
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGREDID MLG+GRPF+ E+ ++ + + IN + V+ +
Sbjct: 229 EASFHGAGREDIDALMLGTGRPFVIEVAEPQDRHPD--ADALADAINDFADGKAEVEGVA 286
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRV 480
+ G + + R E + +K+Y A V P+ D+D + I L I Q+TP RV
Sbjct: 287 VAGYE--MVERVKELDARKRYRADVEFDAPVGDDDLRDAIDELDGAT----IEQETPNRV 340
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ L RE+ + + ++ + + + + G YIKE V D GRTNPS+ +LG
Sbjct: 341 DHRRAHLVRERDVYDITADRE--DDTHATVEIEGEGGLYIKELVSSDDGRTNPSLAGLLG 398
Query: 541 CRAEILQLDVTDV 553
A + LDV V
Sbjct: 399 VGAVVTALDVVAV 411
>gi|300710296|ref|YP_003736110.1| hypothetical protein HacjB3_04635 [Halalkalicoccus jeotgali B3]
gi|448294622|ref|ZP_21484701.1| pseudouridylate synthase [Halalkalicoccus jeotgali B3]
gi|299123979|gb|ADJ14318.1| hypothetical protein HacjB3_04635 [Halalkalicoccus jeotgali B3]
gi|445586299|gb|ELY40581.1| pseudouridylate synthase [Halalkalicoccus jeotgali B3]
Length = 442
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 116/263 (44%), Gaps = 32/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE-----------------ERMG------EASIEEIIG 351
P + GRY K R++ QT W E E G + S+E
Sbjct: 173 PAFVYGRYRKLERDIPQTEWPCRECGGSGKQLAPDGGEEPCEYCGGSGYLYDDSVEGFTA 232
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE 411
++ G+ FH AGRED+D RML SGRPF+ E+++ RE +L +E +IN
Sbjct: 233 PAVVAAMDGEEGVFHGAGREDVDARMLESGRPFVLEVKHPRERTPDL--PSLEREINEAA 290
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ 471
V V+ L + + + R E K Y V + P+ E F+ + +
Sbjct: 291 EGAVEVEGLDLATHE--MVERVKGLEASKTYRMDVEFAGPVDPEAFE---GALDALDGAT 345
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I Q TP RV HRR+ L R + + + E + +H G Y+KE V GD GRT
Sbjct: 346 IEQDTPQRVAHRRADLTRVREVYEISGELLDPEHAELTVHGA--GGLYVKELVSGDEGRT 403
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS ++G + LDV DV+
Sbjct: 404 EPSFAGLVGVEGVVTALDVIDVR 426
>gi|448577304|ref|ZP_21642934.1| pseudouridylate synthase [Haloferax larsenii JCM 13917]
gi|445727949|gb|ELZ79558.1| pseudouridylate synthase [Haloferax larsenii JCM 13917]
Length = 427
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECDGSGYQGKEPCDYCGGSGYLYEHSVEGFVAPVAMDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+ +E +N++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RNIDVERLEGDVNAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + ED Q ++L+E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTAEDLQ--AALEELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + E +++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASLTRTRQVYDATGE--LEDARHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 DAVVTALDVIAVE 413
>gi|335436881|ref|ZP_08559670.1| putative pseudouridylate synthase [Halorhabdus tiamatea SARL4B]
gi|334897146|gb|EGM35283.1| putative pseudouridylate synthase [Halorhabdus tiamatea SARL4B]
Length = 447
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 44/268 (16%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W ++ + G + S+EE+ + G
Sbjct: 168 GRYRKIKRDIPQTEWPCNDCNATGTVDGDPCDGCDGTGYRYDESVEELTAPVVREAMDGS 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RMLG+GRPF+ E++ R ++ V++++ IN + V V+ L
Sbjct: 228 RAVFHGAGREDVDARMLGTGRPFVIEVKEPR--TRDVDVEDLQDDINDFADGKVEVEELA 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K Y V P+ DF + E++ I Q+TP RV
Sbjct: 286 LATHD--MVERVKEHDASKTYRMTVAFDEPVDAADFH---AALESLEGETIEQRTPNRVA 340
Query: 482 HRRSPLEREKII-----------NWMKI------EKIAG--SSQYFLLHMCTQAGTYIKE 522
HRR + R + + + M + + AG ++++ + + + G Y+KE
Sbjct: 341 HRRGDIVRTRTVYDIDGALDPDGDGMDVPVGERADDNAGPATARHATIEVHGEGGLYVKE 400
Query: 523 FVHGDLGRTNPSIGSILGCRAEILQLDV 550
V GD GRT PS+ +L AE+ LDV
Sbjct: 401 LVSGDEGRTEPSLAGLLDVPAEVTALDV 428
>gi|321463058|gb|EFX74077.1| hypothetical protein DAPPUDRAFT_324687 [Daphnia pulex]
Length = 415
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 8/173 (4%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
C T I+ GRY K+SR + QT W+I+ E+ + SI+E+I ++ P + S KF ++GR
Sbjct: 243 CSHTSIHIAGRYQKFSRKLCQTPWLIEGEKHMDTSIQELICKHLEPFFKTQSVKFSSSGR 302
Query: 371 EDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
ED+DVR LG GRPF E+ + R + +++ + +++ IN +++++L++V + +
Sbjct: 303 EDVDVRTLGLGRPFAIELLDPHRTLFTQVEITQVQIIINK-STDAIQIRDLQLVTKEQLS 361
Query: 430 LMREGEAEKQKQYAALVWI--SRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+++EGE EK K Y AL L ED I+ E V ++QKTP+RV
Sbjct: 362 VLKEGEEEKSKIYRALCVTLDGSTLTAEDLDRINGTTELV----LMQKTPLRV 410
>gi|355571043|ref|ZP_09042313.1| Conserved hypothetical protein CHP01213 [Methanolinea tarda NOBI-1]
gi|354826325|gb|EHF10541.1| Conserved hypothetical protein CHP01213 [Methanolinea tarda NOBI-1]
Length = 409
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 130/255 (50%), Gaps = 23/255 (9%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE------ERMG------EASIEEIIGGNILPMCRGDS 362
P++F GRY K R + QT W E+ G S+EEIIG + + ++
Sbjct: 161 PVFFCGRYCKLERGLPQTHWDCRACRGAGCEKCGFTGKQYPDSVEEIIGIPAIRLFSAEN 220
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
H AGREDID M+GSGRPF+ E+ R +L +++E +IN V V +
Sbjct: 221 AILHGAGREDIDALMVGSGRPFVMEVVAPRIRSVDL--RDLEDEINREAGGKVTVSIERW 278
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPL-QDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ +++ A+ K+Y LV I QDE I +LK ++ Q+TP+RV
Sbjct: 279 GKREDVEIIKS--AKGYKKYRILVEIEGSYTQDELQSAIRALKGA----KVNQRTPLRVA 332
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ RE+ + + I + + +L + +AG YIKE V GD GRT PS+ ILG
Sbjct: 333 HRRADRVRERRV--IDIRALGEENGRVILEITGEAGLYIKELVSGDQGRTQPSLSGILGR 390
Query: 542 RAEILQLDVTDVKMN 556
A + QLDV V+ N
Sbjct: 391 PARVCQLDVVYVQGN 405
>gi|307353995|ref|YP_003895046.1| hypothetical protein Mpet_1856 [Methanoplanus petrolearius DSM
11571]
gi|307157228|gb|ADN36608.1| conserved hypothetical protein [Methanoplanus petrolearius DSM
11571]
Length = 419
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 118/250 (47%), Gaps = 27/250 (10%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDS 362
P+Y GRY KY R + QTRW +M S+EE+IG + + +
Sbjct: 163 PLYIYGRYCKYERGIPQTRWHCRVCRGKGCERCNFTGKMYADSVEELIGRPAIEVFKSKD 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI--QNAREVPSELLVKEIESKINSLENKLVRVKNL 420
H AGREDID RMLG+GRPF+ EI R E E+E IN V V
Sbjct: 223 AVLHGAGREDIDARMLGTGRPFVIEIVEPTIRSFDPE----ELEKTINESAGGRVSVTID 278
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQ-DEDFQTISSLKETVRCYQILQKTPIR 479
I + ++ G+A K+Y+ LV + DE ++SL+ + I Q+TP R
Sbjct: 279 HISDRKEVETLKSGKA--HKKYSILVEVEGEFSADEVKSALNSLRGAI----INQRTPER 332
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
V HRR+ R++ + I F + + AG YIKE + GD GRT+PS+ I+
Sbjct: 333 VSHRRADKVRKR--QCIDISCTGVEDGSFRIEVLGDAGLYIKELISGDEGRTSPSLSEII 390
Query: 540 GCRAEILQLD 549
A + LD
Sbjct: 391 NRPARVKSLD 400
>gi|257387672|ref|YP_003177445.1| THUMP domain-containing protein [Halomicrobium mukohataei DSM
12286]
gi|257169979|gb|ACV47738.1| THUMP domain protein [Halomicrobium mukohataei DSM 12286]
Length = 438
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------ERMGE------------ASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W +E +R E S+E++ +L G+
Sbjct: 180 GRYRKLERDIPQTKWPCNECGATGLKRGAECSGCDGTGYRYPESVEQLSAPVVLDAMDGE 239
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLGSGRPF+ EI+ R ++ +E++IN + V V+ L+
Sbjct: 240 EAVFHGAGREDVDALMLGSGRPFVIEIKEPRR--RDVDADALEAEINDFADGKVEVEGLR 297
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ R E E K Y V P+++ T+ + I Q+TP RV
Sbjct: 298 RATHD--MVARVKEHEASKTYRMDVAFDEPIEE---VTLDDAFAAIDGATIEQRTPQRVD 352
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + + E + +H G Y+KE + GD GRT P++ +G
Sbjct: 353 HRRADITRTRDVYDISGELDDARNADIEVHGA--GGLYVKELISGDEGRTQPNLADEVGT 410
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 411 GAVVTALDVLDVE 423
>gi|448311344|ref|ZP_21501108.1| pseudouridylate synthase [Natronolimnobius innermongolicus JCM
12255]
gi|445605172|gb|ELY59103.1| pseudouridylate synthase [Natronolimnobius innermongolicus JCM
12255]
Length = 457
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 31/256 (12%)
Query: 320 GRYLKYSRNVSQTRWIIDE----------------------ERMGEASIEEIIGGNILPM 357
GRY K R++ QT W E M + S+E+++ +++
Sbjct: 183 GRYRKLERDIPQTEWPCRECGGSGVQLGDDGEEPCDYCGGSGYMYDTSVEQVVRPHVVDA 242
Query: 358 CRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRV 417
G+ FH AGRED+D RML GRPF+ E+ R + V +E +IN+ V V
Sbjct: 243 MDGEEGTFHGAGREDVDARMLEGGRPFVLEVD--RPTIRDPDVATLEREINAAAEGAVEV 300
Query: 418 KNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTP 477
+ L++ + ++E +A K+Y A V + + + +F+ +L+E + + Q TP
Sbjct: 301 EGLRLATYEMVERVKEHDA--SKEYRADVEFADAVDETEFE--DALEE-LSGTTVQQDTP 355
Query: 478 IRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
RV HRR+ L RE+ + E + +H + G YIKE + D GRT PS+
Sbjct: 356 QRVDHRRADLTRERTVYDADGELRGPTEAEVRIH--GEGGLYIKELISSDEGRTEPSLAG 413
Query: 538 ILGCRAEILQLDVTDV 553
+L AE+ LDV V
Sbjct: 414 VLETDAEVTALDVLGV 429
>gi|313125353|ref|YP_004035617.1| hypothetical protein Hbor_05770 [Halogeometricum borinquense DSM
11551]
gi|448287051|ref|ZP_21478267.1| pseudouridylate synthase [Halogeometricum borinquense DSM 11551]
gi|312291718|gb|ADQ66178.1| conserved hypothetical protein TIGR01213 [Halogeometricum
borinquense DSM 11551]
gi|445572797|gb|ELY27327.1| pseudouridylate synthase [Halogeometricum borinquense DSM 11551]
Length = 427
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 27/252 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W ++ M + S+E + ++ + G
Sbjct: 170 GRYRKLERDIPQTEWPCNKCHGSGYLGKQPCDKCDGTGYMYQDSVEGLSAPVVMDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D M+G+GRPF+ E+ R + V+ +E IN+ + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMVGTGRPFVIEVMEPRR--RNVDVERLEGDINAFAEGKIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++ + R E K+Y A V + + + ++ E + I Q TP RV
Sbjct: 288 L--AEYDMVERVKELNASKRYRAEVEFGDDVSETE---LTDALEELDGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + + + ++ + + G YIKE V GD GRTNPS+ ILG
Sbjct: 343 HRRAALTRTREV--FEATGEWENERHATVEIHGAGGLYIKELVSGDDGRTNPSLAGILGV 400
Query: 542 RAEILQLDVTDV 553
AE+ LDVT V
Sbjct: 401 DAEVTALDVTGV 412
>gi|167042539|gb|ABZ07263.1| hypothetical protein ALOHA_HF4000ANIW133F6ctg1g13 [uncultured
marine microorganism HF4000_ANIW133F6]
Length = 477
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 30/270 (11%)
Query: 307 LECLCFRT-----PIYFGGRYLKYSRNVSQTRWIIDEERMGEA---------------SI 346
++CL R P++ GRY K R + QTRW R G A S+
Sbjct: 218 IDCLTLRVNVDIRPVFIYGRYRKLGRGIPQTRWPCRACR-GRATGCEACEETGLQYPDSV 276
Query: 347 EEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESK 406
+++IG D FH GREDIDVR LG GRPF+ EI+ R +L ++I
Sbjct: 277 QDLIGETFRDALSADDTSFHGMGREDIDVRCLGRGRPFVLEIKRPRIRRVDL--EKIMHA 334
Query: 407 INSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKET 466
+N+ + + + +L+ + ++E AE K Y + P ++ Q I+++ +
Sbjct: 335 VNTSAAEKIEISDLRWTNRSEVSRIKETRAE--KSYTIRFTLENPPDEK--QIIAAIN-S 389
Query: 467 VRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHG 526
+ + Q+TP RV HRR+ +R + + + I++I + + +AGTY+KE VH
Sbjct: 390 LSGVTLEQQTPKRVSHRRADKKRRRKV--VSIDRIEIFDKEIQFSVRCEAGTYVKELVHS 447
Query: 527 DLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
D GRT PSI S+L ++L LDV D+ +
Sbjct: 448 DEGRTVPSIASVLEQDCQVLWLDVEDIHAD 477
>gi|448607692|ref|ZP_21659645.1| pseudouridylate synthase [Haloferax sulfurifontis ATCC BAA-897]
gi|445737629|gb|ELZ89161.1| pseudouridylate synthase [Haloferax sulfurifontis ATCC BAA-897]
Length = 427
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RSIDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + DE+ ++L E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTDEELG--AALDELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E +++ + + + G YIKE + GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHVYDATGE--LEDARHATVEIHGEGGLYIKELISGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|167043077|gb|ABZ07788.1| hypothetical protein ALOHA_HF4000ANIW141C7ctg1g22 [uncultured
marine microorganism HF4000_ANIW141C7]
Length = 534
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 30/270 (11%)
Query: 307 LECLCFRT-----PIYFGGRYLKYSRNVSQTRWIIDEERMGEA---------------SI 346
++CL R P++ GRY K R + QTRW R G A S+
Sbjct: 275 IDCLTLRVNVDIRPVFIYGRYRKLGRGIPQTRWPCRACR-GRATGCEACEETGLQYPDSV 333
Query: 347 EEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESK 406
+++IG D FH GREDIDVR LG GRPF+ EI+ R +L ++I
Sbjct: 334 QDLIGETFRDALSADDTSFHGMGREDIDVRCLGRGRPFVLEIKRPRIRRVDL--EKIMHA 391
Query: 407 INSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKET 466
+N+ + + + +L+ + ++E AE K Y + P ++ Q I+++ +
Sbjct: 392 VNTSAAEKIEISDLRWTNRSEVSRIKETRAE--KSYTIRFTLENPPDEK--QIIAAIN-S 446
Query: 467 VRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHG 526
+ + Q+TP RV HRR+ +R + + + I++I + + +AGTY+KE VH
Sbjct: 447 LSGVTLEQQTPKRVSHRRADKKRRRKV--VSIDRIEIFDKEIQFSVRCEAGTYVKELVHS 504
Query: 527 DLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
D GRT PSI S+L ++L LDV D+ +
Sbjct: 505 DEGRTVPSIASVLEQDCQVLWLDVEDIHAD 534
>gi|118431102|ref|NP_147317.2| pseudouridylate synthase [Aeropyrum pernix K1]
gi|121727617|sp|Q9YEN2.2|PUS10_AERPE RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|116062427|dbj|BAA79514.2| putative pseudouridine synthase PsuX [Aeropyrum pernix K1]
Length = 437
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+ + RY K +RN+SQ W E S+E+ + +L + G+ HAAGRED+D
Sbjct: 199 LLYKARYWKLARNISQAYWPTPEGPR-YFSVEQALW-PVLKLTGGERLVVHAAGREDVDA 256
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLGSGRP + E+++ R + ++E+E+ N+ LVR + L +E
Sbjct: 257 RMLGSGRPMIVEVKSPRR--RRIPLEELEAAANAGGKGLVRFRFETAAKRAEVALYKEET 314
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
A +K Y ALV + + + D + L+ + I+Q+TP RVLHRR + R + +
Sbjct: 315 ARVRKVYRALVAVEGGVSEVD---VEGLRRALEGAVIMQRTPSRVLHRRPDILRRRRLYS 371
Query: 496 MKIEKIAGSSQYFLLHMC---TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ + G+ L C + G YIKE V GD GRT PS +LG A ++LDV
Sbjct: 372 LDCSPLEGAP----LMECILEAEGGLYIKELVSGDGGRTRPSFAEVLGREAVCIELDVVW 427
Query: 553 VK 554
V+
Sbjct: 428 VE 429
>gi|281205302|gb|EFA79494.1| hypothetical protein PPL_07545 [Polysphondylium pallidum PN500]
Length = 360
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 87/151 (57%), Gaps = 23/151 (15%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA--------SIEEIIGGNILPMCRGDSYK 364
PI+ GRY KY+RN+SQT W + G A S++ I I +C+ D+
Sbjct: 164 HAPIFIAGRYNKYARNLSQTPWTL----KGAAATPDSEIDSVDLFISQPIKDLCKADATN 219
Query: 365 FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVK-----EIESKINSLENKLVRVKN 419
F A+GREDIDVRMLG GRPF EI N P + +K EIE+KIN EN+ +RV
Sbjct: 220 FVASGREDIDVRMLGEGRPFFLEITN----PHRIFMKYNDFREIENKIN--ENQDIRVSR 273
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISR 450
L+++ + +++++GE KQK Y VW ++
Sbjct: 274 LQVITKKQTSILKDGETSKQKIYRCTVWTAK 304
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 510 LHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
++ AGTYIKEFVHGDLGRT P++GS+L A+ILQLDV D+ ++
Sbjct: 306 FNIWASAGTYIKEFVHGDLGRTTPNLGSLLNTEADILQLDVLDIDLD 352
>gi|305663446|ref|YP_003859734.1| pseudouridylate synthase [Ignisphaera aggregans DSM 17230]
gi|332319845|sp|E0SNQ8.1|PUS10_IGNAA RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|304378015|gb|ADM27854.1| pseudouridylate synthase [Ignisphaera aggregans DSM 17230]
Length = 430
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 10/231 (4%)
Query: 320 GRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRML 378
GRY K R +SQ W+ + + SIEEI ++ GD H AGRED+DVR L
Sbjct: 201 GRYWKLGRMISQNIWLTKNGVKKYPLSIEEI-AKMLVKDGFGDDVVLHIAGREDVDVRTL 259
Query: 379 GSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEK 438
GSGRPF+ EI+ R+ + +K+IE+++NS+ L N+ V + +++G
Sbjct: 260 GSGRPFVLEIKRPRK--RNIDIKDIENRLNSISRWLKFELNM-FVDRDFVSRVKKGCRTS 316
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKI 498
K Y A+V R + ED I L+E R I Q+TP RVL R+ + R + + +K
Sbjct: 317 YKIYRAIVVADRDIGIED---IKRLEEFFRDRIIEQRTPTRVLRRKKDVLRRRKVFEIKT 373
Query: 499 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
I S + F + + G Y+KE + GD GRT PS S+L L LD
Sbjct: 374 RVI--SPRVFEALIKCEGGLYVKELISGDNGRTVPSFSSVLNANTLCLTLD 422
>gi|337283890|ref|YP_004623364.1| RNA-binding protein [Pyrococcus yayanosii CH1]
gi|334899824|gb|AEH24092.1| RNA-binding protein [Pyrococcus yayanosii CH1]
Length = 404
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 123/252 (48%), Gaps = 41/252 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCR------GDSYKFHA 367
PIY GRY K R + QT + R ASI +CR G F
Sbjct: 165 NPIYVYGRYRKLVRGIPQT--PLPGFRDSVASI----------ICRAFSRAFGGKCVFKG 212
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG GRPF+ EI+ + + L ++I I + + V V +K VG +
Sbjct: 213 AGREDVDVRMLGRGRPFIVEIKRPKRRKANL--EKIAEDIAA--SGKVEVLEMKFVGPK- 267
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
EAEK +K Y AL+++ + E+ + + ET+R +I Q+TP RVL
Sbjct: 268 -------EAEKVLTERHRKLYEALIFVREGVMPEEVRKVV---ETLRGAEIRQRTPRRVL 317
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
+ RS R + + E I +F L + T G YIKE + GD GRT PS+ ILG
Sbjct: 318 NSRSDTVRVRRVYEAWGEPI--DETHFRLRLLTDGGLYIKELISGDGGRTRPSVAEILGK 375
Query: 542 RAEILQLDVTDV 553
A LDV DV
Sbjct: 376 DAWCELLDVLDV 387
>gi|448730925|ref|ZP_21713228.1| pseudouridylate synthase [Halococcus saccharolyticus DSM 5350]
gi|445792519|gb|EMA43120.1| pseudouridylate synthase [Halococcus saccharolyticus DSM 5350]
Length = 465
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 122/271 (45%), Gaps = 39/271 (14%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG-----------------------EASIEEIIG 351
P + GRY K R++ QT W E G + S+EE+
Sbjct: 166 PAFVYGRYRKLDRDIPQTEWPCRECGGGGTQLAADGGTEPCDYCGGSGYLYDESVEELTA 225
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE 411
+ G FH AGRED+D RMLG+GRPF+ E++ + + ++E+ IN
Sbjct: 226 PVVEDAMDGADAVFHGAGREDVDARMLGTGRPFVIEVKEPHQ--RAIDTADLEAAINDFA 283
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCY 470
+ V V+ L+ + + R E + K Y+ V + P+ + +F +++L
Sbjct: 284 DDTVEVEGLRRATHE--MVERVKEHDAHKTYSMAVEFTDPVTESEFTDALAALDGAT--- 338
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIE-------KIAGSSQYFLLHMCTQAGTYIKEF 523
I Q TP RV HRR+ RE+ + + E +++ + + + G Y+KE
Sbjct: 339 -IDQHTPERVDHRRASRTRERTVYEIDGELEPDRTGDDEDGARHATVELRGEGGLYVKEL 397
Query: 524 VHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
V GD RT PS+ +LG A + LDV V+
Sbjct: 398 VSGDDDRTEPSLAGLLGIDATVTALDVLAVE 428
>gi|134046608|ref|YP_001098093.1| putative pseudouridylate synthase [Methanococcus maripaludis C5]
gi|132664233|gb|ABO35879.1| THUMP domain protein [Methanococcus maripaludis C5]
Length = 470
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 27/254 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRW--------------IIDEERMGEASIEEIIGGNILPMCR 359
P++ GRY K R + Q+ W ++ M S+EEII + + +
Sbjct: 221 NPVFIKGRYKKLVRGIPQSHWHCRACRGKGCEKCNFTGKQYM--TSVEEIIAEPFMEVMK 278
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
G S H AGREDIDVRMLG+GRPF+ EI+ + ++ ++E+ SK+N E++ V + N
Sbjct: 279 GSSEALHGAGREDIDVRMLGNGRPFVIEIKEPK--VRKVNLEELASKVN--ESETVEIIN 334
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
++ G + + E K K Y A V + +E+ ++ L + I Q+TP R
Sbjct: 335 VE-YGVKKDVHFFKNEPHK-KTYLAHVECEEKVSNEE---VAELVNELEDLTIDQRTPDR 389
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
V HRR+ L R + + I + F L + G YIKE + GD GRT PS+ +L
Sbjct: 390 VSHRRADLVRVRKVYKAWPHMIDDYN--FELKIFCDGGLYIKELISGDEGRTTPSVSELL 447
Query: 540 GCRAEILQLDVTDV 553
+ LDV DV
Sbjct: 448 NNKCICKFLDVLDV 461
>gi|448620243|ref|ZP_21667591.1| pseudouridylate synthase [Haloferax denitrificans ATCC 35960]
gi|445757031|gb|EMA08387.1| pseudouridylate synthase [Haloferax denitrificans ATCC 35960]
Length = 427
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTIDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + D + Q ++L E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTDGELQ--AALDELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + +++ + + + G YIKE + GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDARHATVEIHGEGGLYIKELISGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|323454095|gb|EGB09965.1| hypothetical protein AURANDRAFT_23737 [Aureococcus anophagefferens]
Length = 181
Score = 109 bits (272), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 7/117 (5%)
Query: 438 KQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMK 497
K K YA +VW +R L D T R + + QKTP+RV+H RS REK ++ +
Sbjct: 66 KTKTYACVVWCARDLTARDVATCDR-----RDFDVAQKTPVRVMHSRSLAVREKRVHELS 120
Query: 498 IEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ ++ G ++ +L + T AG YIKEFVHGDLGRT PS+ S+LG RA+ILQLDV DV+
Sbjct: 121 LRRLNG--RFAVLTIVTSAGMYIKEFVHGDLGRTEPSLASMLGARADILQLDVLDVE 175
>gi|150399851|ref|YP_001323618.1| putative pseudouridylate synthase [Methanococcus vannielii SB]
gi|150012554|gb|ABR55006.1| THUMP domain protein [Methanococcus vannielii SB]
Length = 474
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 27/254 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + Q+ W + + S+EEII + + +G
Sbjct: 225 NPIFIKGRYKKLVRGIPQSHWHCRTCKGRGCEKCNFTGKQYQTSVEEIIAEPFMEIMKGS 284
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
S H AGREDIDVRMLG+GRPF+ EI+ + L K++ K+NS +K+V + +L+
Sbjct: 285 SEALHGAGREDIDVRMLGNGRPFVIEIKEPKVRTVNL--KKMSEKVNS--SKMVEITDLE 340
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
G++ + E K+ A + + ++E + L+ V I Q+TP RV
Sbjct: 341 -YGNKKDVHFFKNEPHKKTYLAKVECDEKVSKEEVLNLVQKLENLV----IDQRTPDRVA 395
Query: 482 HRRSPLEREKII--NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
HRR+ L R + + W I F L + G YIKE + D GRT+PS+ +L
Sbjct: 396 HRRADLVRVRKVYKAWPHI----LDDYNFELKIFCDGGLYIKELISSDEGRTSPSVSELL 451
Query: 540 GCRAEILQLDVTDV 553
+ LDV DV
Sbjct: 452 DKKCICKFLDVLDV 465
>gi|448584727|ref|ZP_21647470.1| pseudouridylate synthase [Haloferax gibbonsii ATCC 33959]
gi|445727581|gb|ELZ79191.1| pseudouridylate synthase [Haloferax gibbonsii ATCC 33959]
Length = 427
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTIDVEQLEGDINAMAEGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + DE+ ++L E I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTDEELG--AALDELTGA-TIEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + +++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDARHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|352681833|ref|YP_004892357.1| putative pseudouridylate synthase [Thermoproteus tenax Kra 1]
gi|350274632|emb|CCC81277.1| Predicted pseudouridylate synthase [Thermoproteus tenax Kra 1]
Length = 410
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 26/250 (10%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E + P+ Y+K SR+VSQ + + + +IEEII ++ G + HA
Sbjct: 184 EVKVVQNPLLLYTSYIKLSRSVSQGKLVPGARK----TIEEIID-HVRERFGGTALVLHA 238
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRP + E++ R +L S + + E L +K
Sbjct: 239 AGREDVDVRMLGNGRPAIIEVKKPRRYSGDL------SGLRAAELILAPLK------PAT 286
Query: 428 WTLMREGEAEKQ---KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+RE +A+ + K Y AL +PL D + + L+ V ++Q+TP R+ R
Sbjct: 287 RNDVRELKAKSKTNIKVYRALALSDKPLTAGDLEKLKELEGVV----VVQRTPRRI-KRL 341
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
SP + + + + + ++ + L C Q G Y+KEF++GD GRT PS+ LG + +
Sbjct: 342 SPRAKRRRMVYNVVGRLITNRVLELFVRC-QGGLYVKEFINGDEGRTTPSVAEALGAKLD 400
Query: 545 ILQLDVTDVK 554
+++LDV +V+
Sbjct: 401 VVELDVLEVE 410
>gi|448634382|ref|ZP_21674780.1| pseudouridylate synthase [Haloarcula vallismortis ATCC 29715]
gi|445749355|gb|EMA00800.1| pseudouridylate synthase [Haloarcula vallismortis ATCC 29715]
Length = 425
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCDGSGYRYDESVEQLSAPVAREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN+ + V V +L+
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVAADELEADINAFADGKVEVTDLQ 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E + K Y V P++ + Q +L E + I Q+TP RV
Sbjct: 286 LATHK--MVERVKELDASKTYRMDVEFGAPVEADALQ--DALAE-LDGATIQQETPQRVT 340
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 341 HRRADITRTRTV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGLLDT 398
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 399 DAVVTALDVIDVQ 411
>gi|110668981|ref|YP_658792.1| pseudouridylate synthase [Haloquadratum walsbyi DSM 16790]
gi|109626728|emb|CAJ53195.1| tRNA pseudouridine synthase [Haloquadratum walsbyi DSM 16790]
Length = 445
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 114/252 (45%), Gaps = 27/252 (10%)
Query: 320 GRYLKYSRNVSQTRW------------IIDEERMG------EASIEEIIGGNILPMCRGD 361
GRY K +R + QT W I E G + S+EE+ + + G
Sbjct: 172 GRYRKLTRGIPQTEWPCSACDGSGYQGSIACETCGGSGYLYDDSVEELTAPVVCDVMDGT 231
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D M+G+GRPF+ E+ R + + +E IN+ + V V+NL+
Sbjct: 232 DSTFHGAGREDVDALMIGTGRPFVIEVFEPRR--RNIDINRLEGDINAFADGAVEVENLR 289
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E E K+Y A V P+ +F T + I Q TP RV
Sbjct: 290 LANYE--MVERVKEIEASKRYRAAVAFDAPINVTNFDTALTTLTDT---TIEQYTPNRVD 344
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + + + + + G Y+KE + GD GRT PS+ +L
Sbjct: 345 HRRAAITRTRTV--YDADGTLDDPTHATVEIHGAGGLYVKELISGDDGRTEPSLAGLLDT 402
Query: 542 RAEILQLDVTDV 553
A + LDV V
Sbjct: 403 GATVTDLDVLGV 414
>gi|448668245|ref|ZP_21686376.1| pseudouridylate synthase [Haloarcula amylolytica JCM 13557]
gi|445768327|gb|EMA19412.1| pseudouridylate synthase [Haloarcula amylolytica JCM 13557]
Length = 425
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------ERMG------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCGGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN+ + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMAPRK--RDVDADELEADINAFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRV 480
+ + + R E + K Y V P+ + Q ++ L T I Q+TP RV
Sbjct: 286 LATHE--MVERVKELDASKTYRMDVEFGAPVDADALQDALAELDGTT----IQQETPQRV 339
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 340 THRRADITRTRTV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGLLD 397
Query: 541 CRAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 398 TDAVVTALDVIDVQ 411
>gi|401827478|ref|XP_003887831.1| putative pseudouridylate synthase [Encephalitozoon hellem ATCC
50504]
gi|392998838|gb|AFM98850.1| putative pseudouridylate synthase [Encephalitozoon hellem ATCC
50504]
Length = 311
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+PIY G Y+K RN++Q+ ++ S+ + + D F AGRED
Sbjct: 73 SPIYIYGEYVKMDRNMTQSPLVVGGRLKCSRSVSDF-KMQVKEFFLADDVVFIPAGREDF 131
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRM+ GRPFL ++N R + E SL + L +KNL +V + ++ +
Sbjct: 132 DVRMV-EGRPFLLTVRNPRRNLN------FEKMGLSLYDGL-EIKNLCVVKKECKAMIFQ 183
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
GE+ K Y+ + + L LK+ Y I Q+TP+RVLHRR+ L REK +
Sbjct: 184 GESVSSKTYSVFLCCKKEL---------DLKKD---YVIKQRTPLRVLHRRANLTREKKV 231
Query: 494 NWMKIEKI-AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
++ +K Y+ + + AGTYIKEFV+GD GRT PS+GS ++L+LDV
Sbjct: 232 CILESKKKDVDGWIYYHIVLEASAGTYIKEFVNGDFGRTVPSLGSKEN-YCDLLELDV 288
>gi|448689618|ref|ZP_21695202.1| pseudouridylate synthase [Haloarcula japonica DSM 6131]
gi|445777889|gb|EMA28849.1| pseudouridylate synthase [Haloarcula japonica DSM 6131]
Length = 425
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------ERMG------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCGGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ +E+ IN + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVDADALEADINDFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E + K Y V P+ + Q +L E + I Q+TP RV
Sbjct: 286 LATHE--MVERVKELDASKTYRMDVEFGAPVDADALQ--DALAE-LDGATIEQETPQRVT 340
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E S +H + G Y+KE V D GRT PS+ +LG
Sbjct: 341 HRRADITRTRTVYDAAGELTDDSHAELRIH--GEGGLYVKELVSSDEGRTEPSLAGLLGT 398
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 399 DAVVTALDVIDVQ 411
>gi|448733911|ref|ZP_21716151.1| pseudouridylate synthase [Halococcus salifodinae DSM 8989]
gi|445801897|gb|EMA52212.1| pseudouridylate synthase [Halococcus salifodinae DSM 8989]
Length = 482
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMG-----------------------EASIEEIIG 351
P + GRY K R++ QT W E G + S+EE+
Sbjct: 166 PAFVYGRYRKLDRDIPQTEWPCRECGGGGTQLAADGGTEPCDYCGGSGYLYDESVEELTA 225
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE 411
+ G FH AGRED+D RMLG+GRPF+ E++ E+ ++E+ +N
Sbjct: 226 PVVEDAMDGADAVFHGAGREDVDARMLGTGRPFVIEVKEPHH--REIDAADLEAAVNDFA 283
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCY 470
+ V V+ L+ + + R E + K Y+ V + P+++ F +++L T
Sbjct: 284 DGTVEVEGLRRATHE--MVERVKELDAHKTYSMSVEFADPVEERAFADALATLDGTT--- 338
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIE-----KIAGS------------------SQY 507
I Q TP RV HRR+ RE+ + + E AG+ +++
Sbjct: 339 -IAQDTPERVDHRRASRTRERTVYEIAGELEPDRDDAGTDADRDAEPTDANTDGEDGARH 397
Query: 508 FLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ + + G Y+KE V GD RT+PS+ +LG A + LDV V+
Sbjct: 398 ATVELRGEGGLYVKELVSGDGDRTDPSLAGLLGIDATVTALDVLAVE 444
>gi|448465182|ref|ZP_21598749.1| pseudouridylate synthase [Halorubrum kocurii JCM 14978]
gi|445815157|gb|EMA65092.1| pseudouridylate synthase [Halorubrum kocurii JCM 14978]
Length = 427
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRKGPDPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + V+ ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDVERLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++E +A K+ + A + + + D I L+ T + Q TP RV
Sbjct: 288 LATYDMVERVKEHDAAKRYR-AQVAFDADVDADALAAAIEELEGTT----VEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E +H + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAEVDDARRATVEIH--GEGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVVAVE 413
>gi|344210765|ref|YP_004795085.1| pseudouridylate synthase [Haloarcula hispanica ATCC 33960]
gi|343782120|gb|AEM56097.1| pseudouridylate synthase [Haloarcula hispanica ATCC 33960]
Length = 425
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------ERMG------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCGGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN+ + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVDADELEADINAFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRV 480
+ + R E + K Y V P++ + Q ++ L T I Q+TP RV
Sbjct: 286 PATHE--MVERVKELDASKTYRMDVEFGEPVEADALQDALAELDGTT----IQQETPQRV 339
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 340 THRRADITRTRTV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGLLE 397
Query: 541 CRAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 398 TNAVVTALDVIDVQ 411
>gi|448474994|ref|ZP_21602759.1| pseudouridylate synthase [Halorubrum aidingense JCM 13560]
gi|445816986|gb|EMA66868.1| pseudouridylate synthase [Halorubrum aidingense JCM 13560]
Length = 427
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 123/255 (48%), Gaps = 27/255 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGPDPCDHCGGSGYLYDDSVEEYTAPIVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ EI+ R + V+ +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEIEEPRR--RRVDVERLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++ + R E E K+Y A V + +++ + + I Q TP RV
Sbjct: 288 L--ARYDMVARVKELEATKRYRAEVAFDADVD---ADALAAAVDELEGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L RE+ + E + ++ + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASLTRERDVYEASAELV--DDRHATVEIHGAGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVKMN 556
AE+ LDV V+ +
Sbjct: 401 GAEVTALDVLAVEGD 415
>gi|386001515|ref|YP_005919814.1| tRNA pseudouridine synthase Pus10 [Methanosaeta harundinacea 6Ac]
gi|357209571|gb|AET64191.1| tRNA pseudouridine synthase Pus10 [Methanosaeta harundinacea 6Ac]
Length = 451
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 22/252 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGD 361
+ +Y GRY K R QTRW + R + S++E+I I+ R +
Sbjct: 195 SSLYIQGRYRKLVRGFPQTRWPCRDCGGSGCEACGFTGRRYQESVDELIRDPIIEAARCE 254
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH +GREDID RMLG+GRPF+ E + R L + ++ +IN + V V +L+
Sbjct: 255 DTVFHGSGREDIDARMLGTGRPFVVEAVSPR--VRTLDLARLKEEINRRASGKVEVSDLE 312
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
G + ++ +A +K Y+ +V + + +E +++ L + V + Q+TP RV
Sbjct: 313 FTGKETVEGLK--KALFEKSYSMVVELGEEVPEEKLKSV--LDKLVGLVE--QRTPTRVS 366
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R + + M++++++G + L +G Y+KE V GD GRT PS+ +L
Sbjct: 367 HRRADRVRRREVLEMRLDQLSGKTAKMTLR--GTSGLYVKELVSGDGGRTKPSLSGLLEV 424
Query: 542 RAEILQLDVTDV 553
A + +LDV +V
Sbjct: 425 EARVAELDVINV 436
>gi|448406606|ref|ZP_21573060.1| pseudouridylate synthase [Halosimplex carlsbadense 2-9-1]
gi|445677177|gb|ELZ29680.1| pseudouridylate synthase [Halosimplex carlsbadense 2-9-1]
Length = 457
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W + + G + S+E++ + G+
Sbjct: 175 GRYRKLERDIPQTKWPCSDCNGTGLNRGEICEGCDGSGYRYDESVEQLTAPVVEEAMDGE 234
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
S FH AGRED+D ML GRPF+ EI R + ++ ++N V V +L+
Sbjct: 235 SATFHGAGREDVDALMLEGGRPFVIEIDEPR--TRTVDAAALQPEVNEFAEGKVEVTDLR 292
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K Y V P+ DF+ ++L E + I Q+TP RV
Sbjct: 293 QATYE--MVERVKELDASKTYRMAVEFDEPVDAADFE--AALDE-LEGATIEQRTPQRVD 347
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ +ER + + IE ++ + + + G Y+KE V D GRT PS+ +LG
Sbjct: 348 HRRADIERTREV--YDIEGDLDDERHATVELHGEGGLYVKELVSSDEGRTEPSLAGLLGV 405
Query: 542 RAEILQLDVTDVK 554
+ + LDV DV+
Sbjct: 406 ESVVTALDVLDVQ 418
>gi|303390422|ref|XP_003073442.1| putative pseudouridylate synthase [Encephalitozoon intestinalis
ATCC 50506]
gi|303302588|gb|ADM12082.1| putative pseudouridylate synthase [Encephalitozoon intestinalis
ATCC 50506]
Length = 311
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 124/243 (51%), Gaps = 25/243 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+PIY G Y K RN++Q+ +++ S+ + + D F AGRED
Sbjct: 73 SPIYIYGEYTKMDRNMTQSPLVVEGRLKCNRSVSDF-KSQVKEFFLADDVIFTPAGREDF 131
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRM+ GRPFL ++N R S ++N K V ++NL +V + +++
Sbjct: 132 DVRMV-EGRPFLLSVKNPRRNLSF-------ERLNLALYKEVEIRNLSVVRKECKSVIFG 183
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
GE + K Y+ + + L +++ Y + Q+TP+RVLHRR+ L R K
Sbjct: 184 GENQSNKTYSIFLCCKKELALQNY------------YIVEQRTPLRVLHRRANLARIKKA 231
Query: 494 NWMKIEK--IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
++ EK + G Y+ + + AG YIKEFV+GD GRT PS+GS ++L+LDV
Sbjct: 232 WILESEKREVEGWI-YYRIVLEASAGMYIKEFVNGDFGRTVPSLGSKENY-CDLLELDVL 289
Query: 552 DVK 554
V+
Sbjct: 290 RVE 292
>gi|448738066|ref|ZP_21720097.1| pseudouridylate synthase [Halococcus thailandensis JCM 13552]
gi|445802650|gb|EMA52954.1| pseudouridylate synthase [Halococcus thailandensis JCM 13552]
Length = 433
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 32/263 (12%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE-----------------------ERMGEASIEEIIG 351
P + GRY K R + QT W E + + S+EE+
Sbjct: 163 PAFVYGRYRKLERGIPQTEWPCRECGGSGKQFVADGGEEPCDYCGGSGYLYDESVEELTA 222
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLE 411
+ G FH AGRED+D M G+GRPF+ EI+ + + KE+E++IN
Sbjct: 223 PVVEEAMDGSESIFHGAGREDVDATMQGTGRPFVIEIKQPQR--RAVDAKELETEINEFA 280
Query: 412 NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ 471
+ V V+ L+ + G + R E + K Y+ + + P+++ F +L E +
Sbjct: 281 DGSVEVEGLRRA-THG-MVERVKELDAHKTYSMAIEFAEPIEETAF--ADALAE-LDGAT 335
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I Q+TP RV HRR+ R ++ + +IE ++ + + G Y+KE V D GRT
Sbjct: 336 IEQETPQRVDHRRA--SRTRVRDVYEIEGELDDGRHATVELRGAGGLYVKELVSSDEGRT 393
Query: 532 NPSIGSILGCRAEILQLDVTDVK 554
PS+ +LG +E+ LDV V+
Sbjct: 394 EPSLAGLLGVDSEVTALDVIAVE 416
>gi|448415069|ref|ZP_21577940.1| pseudouridylate synthase [Halosarcina pallida JCM 14848]
gi|445681187|gb|ELZ33623.1| pseudouridylate synthase [Halosarcina pallida JCM 14848]
Length = 430
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W ++ M + S+E + ++ + G
Sbjct: 170 GRYRKLERDIPQTEWPCNKCHGTGYLGKQPCDKCDGTGYMYQESVEGLTAPVVMDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R ++ V+ +E IN+ V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVIEIMEPRR--RDVDVERLEGDINAFAGGKAEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + K+Y A V + +E+ +L E + I Q TP RV
Sbjct: 288 LAAYD--MVERVKQLNASKRYRAEVEFGDDVTEEEL--ADALAE-LDGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + + ++ + + G YIKE V GD GRT PS+ +LG
Sbjct: 343 HRRAALTRTREV--FEATGEWADERHATVEVHGAGGLYIKELVSGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDV 553
A + LDVT V
Sbjct: 401 DAVVTALDVTGV 412
>gi|292656108|ref|YP_003536005.1| hypothetical protein HVO_1979 [Haloferax volcanii DS2]
gi|448290102|ref|ZP_21481256.1| pseudouridylate synthase [Haloferax volcanii DS2]
gi|291370136|gb|ADE02363.1| conserved hypothetical protein TIGR01213 [Haloferax volcanii DS2]
gi|445580104|gb|ELY34492.1| pseudouridylate synthase [Haloferax volcanii DS2]
Length = 427
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTVDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + D + +++ + + I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVTDAE---LAAALDELTGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + ++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDPRHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|448570097|ref|ZP_21639091.1| pseudouridylate synthase [Haloferax lucentense DSM 14919]
gi|448599596|ref|ZP_21655399.1| pseudouridylate synthase [Haloferax alexandrinus JCM 10717]
gi|445723398|gb|ELZ75040.1| pseudouridylate synthase [Haloferax lucentense DSM 14919]
gi|445736269|gb|ELZ87813.1| pseudouridylate synthase [Haloferax alexandrinus JCM 10717]
Length = 427
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTVDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + D + +++ + + I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDGVTDAE---LAAALDELTGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + ++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDPRHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|448725586|ref|ZP_21708036.1| pseudouridylate synthase [Halococcus morrhuae DSM 1307]
gi|445798040|gb|EMA48469.1| pseudouridylate synthase [Halococcus morrhuae DSM 1307]
Length = 433
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 119/265 (44%), Gaps = 36/265 (13%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE-----------------------ERMGEASIEEIIG 351
P + GRY K R + QT W E + + S+EE+
Sbjct: 163 PAFVYGRYRKLERGIPQTEWPCRECGGSGKQFVADGGEEPCDYCGGSGYLYDESVEELTA 222
Query: 352 GNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINS 409
+ G FH AGRED+D M G+GRPF+ E++ R V +E E+E+ IN
Sbjct: 223 PVVEEAMDGSESVFHGAGREDVDATMQGTGRPFVIEVKQPQRRAVDTE----ELETGINE 278
Query: 410 LENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
+ V V+ L+ + + R E + K YA + + P+ D Q + +
Sbjct: 279 FADGSVEVEELRRATHE--MVERVKELDAHKTYAMAIEFAEPI---DEQAFADALAELDG 333
Query: 470 YQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLG 529
I Q TP RV HRR+ R ++ + +IE +++ + + G Y+KE V D G
Sbjct: 334 ATIEQDTPQRVDHRRA--SRTRVRDVYEIEGELDDARHASVELRGAGGLYVKELVSSDEG 391
Query: 530 RTNPSIGSILGCRAEILQLDVTDVK 554
RT PS+ +LG +E+ LDV V+
Sbjct: 392 RTEPSLAGLLGVDSEVTALDVIAVE 416
>gi|433422651|ref|ZP_20406056.1| pseudouridylate synthase [Haloferax sp. BAB2207]
gi|432198566|gb|ELK54836.1| pseudouridylate synthase [Haloferax sp. BAB2207]
Length = 427
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTVDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + D + +++ + + I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDGVTDAE---LAAALDELTGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + ++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDPRHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|448458583|ref|ZP_21596249.1| pseudouridylate synthase [Halorubrum lipolyticum DSM 21995]
gi|445809095|gb|EMA59142.1| pseudouridylate synthase [Halorubrum lipolyticum DSM 21995]
Length = 427
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + V+ ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDVERLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++E +A K+ + A + + + D I L+ T + Q TP RV
Sbjct: 288 LATYDMVERVKEHDAAKRYR-AEVTFDADVDDDALAAAIDELEGTT----VEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E ++ + + + G YIKE + GD GRT+PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDPRHATVEIRGEGGLYIKELISGDEGRTDPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAAVTALDVVAVE 413
>gi|212223551|ref|YP_002306787.1| putative pseudouridylate synthase [Thermococcus onnurineus NA1]
gi|212008508|gb|ACJ15890.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 386
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 29/246 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK--FHAAGRE 371
P+Y GRY K R + QT EE S+ II P R K F AGRE
Sbjct: 161 NPLYIYGRYRKLVRGIPQTPLPELEE-----SVASII---CRPFSRAAGGKCVFKGAGRE 212
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSEL--LVKEIES--KINSLENKLVRVKNLKIVGSQG 427
D+DVRMLG+GRPF+ EI+ ++ +L + KEI + K+ L+ + V K + V ++
Sbjct: 213 DVDVRMLGNGRPFILEIKGPKKRKLDLGAIAKEINASGKVEVLDLRFVTTKEAEEVLTKN 272
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
+K+Y ALV + + E+ + ++ +R +I Q+TP RV R+
Sbjct: 273 ----------HRKEYLALVLVEDGVTPEEAREVAG---ELRGLEIHQRTPWRVRKARADK 319
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R K I+ + I ++F L + T G YIKE + GD GRT PS+ +LG A +
Sbjct: 320 VRVKRIHEAEARWI--DEKHFELRLITDGGLYIKELISGDKGRTKPSVSDLLGKPAWCER 377
Query: 548 LDVTDV 553
LDV ++
Sbjct: 378 LDVLNI 383
>gi|57640838|ref|YP_183316.1| putative pseudouridylate synthase [Thermococcus kodakarensis KOD1]
gi|57159162|dbj|BAD85092.1| RNA-binding protein, containing THUMP domain [Thermococcus
kodakarensis KOD1]
Length = 393
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK--FHAAGRE 371
P+Y GRY K R + QT EE S+ II P R K F AGRE
Sbjct: 161 NPLYIYGRYRKLLRGIPQTPHPDFEE-----SVASII---CRPFSRATGGKCVFKGAGRE 212
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
D+DVRMLG+GRPF+ EI+ + + ++EI +IN+ + V V NL+
Sbjct: 213 DVDVRMLGNGRPFILEIKRPKR--RNINLEEIAREINA--SGKVEVLNLRFTTPD----- 263
Query: 432 REGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRS 485
EAE+ +K+Y ALV + + E+ + ++ + + +I Q+TP RV R+
Sbjct: 264 ---EAERVLSTPHRKEYLALVLVKEGVTPEEAEEVA---KKLTGLEIHQRTPWRVRKARA 317
Query: 486 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 545
R + +++ + I ++F L + T G YIKE + GD GRT PS+ +LG A
Sbjct: 318 DKVRVRRVHYAEARWI--DDKHFELRLITDGGLYIKELISGDKGRTKPSVSDLLGKPAWC 375
Query: 546 LQLDVTDV 553
+LDV +V
Sbjct: 376 ERLDVLNV 383
>gi|45357657|ref|NP_987214.1| pseudouridylate synthase [Methanococcus maripaludis S2]
gi|45047217|emb|CAF29650.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 470
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 124/254 (48%), Gaps = 27/254 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRW--------------IIDEERMGEASIEEIIGGNILPMCR 359
P++ GRY K R + Q+ W ++ M S+EEII + + +
Sbjct: 221 NPVFIKGRYKKLVRGIPQSHWDCRSCRGKGCEKCNFTGKQYM--TSVEEIIAEPFMDVMK 278
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
G S H AGREDIDVRMLG GRPF+ EI+ + ++ ++E+ SK+N N V + N
Sbjct: 279 GSSEALHGAGREDIDVRMLGHGRPFVIEIKEPK--IRKVNLEELASKVNESGN--VEIIN 334
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
++ G + + E K K Y A V + +E+ ++ L + + I Q+TP R
Sbjct: 335 VE-YGVKKDVHFFKNEPHK-KTYLAHVECEEKVSNEE---VAELVKKLEDLTIDQRTPDR 389
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
V HRR+ L R + + I + F L + G YIKE ++ D GRT PS+ +L
Sbjct: 390 VSHRRADLVRVRKVYKAWPHMIDDYN--FELKIFCDGGLYIKELINSDEGRTTPSVSELL 447
Query: 540 GCRAEILQLDVTDV 553
+ LDV DV
Sbjct: 448 NKKCICKFLDVLDV 461
>gi|389852253|ref|YP_006354487.1| pseudouridylate synthase [Pyrococcus sp. ST04]
gi|388249559|gb|AFK22412.1| pseudouridylate synthase [Pyrococcus sp. ST04]
Length = 389
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 41/252 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCR------GDSYKFHA 367
PI+ GRY K R + QT +E + A+I +CR G F
Sbjct: 156 NPIFIAGRYRKLVRGIPQTPAPGFKESV--ATI----------VCRTFKKHFGGKCIFKG 203
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVR LG GRPF+ E++ R V + + E+ +INS + V V L+ + +
Sbjct: 204 AGREDVDVRTLGRGRPFVVEVK--RPVRRNIDLNEVAREINS--SGKVEVIELRFIDRE- 258
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
EAEK +K Y ALV++ + ED + + +++ +I Q+TP RVL
Sbjct: 259 -------EAEKILTTRHKKIYEALVYVKEGVSREDVEKVV---KSLTNAEIRQRTPRRVL 308
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
+ R+ ++ +I K+E +F L + T G YIKE + GD GRT PS+ ILG
Sbjct: 309 NSRA--DKVRIRRVYKVEGELIDDNHFKLRLLTDGGLYIKELISGDKGRTTPSVSEILGK 366
Query: 542 RAEILQLDVTDV 553
A LDV DV
Sbjct: 367 EAWCEILDVLDV 378
>gi|340623276|ref|YP_004741729.1| putative pseudouridylate synthase [Methanococcus maripaludis X1]
gi|339903544|gb|AEK18986.1| putative pseudouridylate synthase [Methanococcus maripaludis X1]
Length = 470
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 27/254 (10%)
Query: 314 TPIYFGGRYLKYSRNVSQTRW--------------IIDEERMGEASIEEIIGGNILPMCR 359
P++ GRY K R + Q+ W ++ M S+EEII + + +
Sbjct: 221 NPVFIKGRYKKLVRGIPQSHWHCRSCKGKGCEKCNFTGKQYM--TSVEEIIAEPFMEVMK 278
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
G S H AGREDIDVRMLG+GRPF+ EI+ + ++ ++E+ SK+N N V + N
Sbjct: 279 GSSEALHGAGREDIDVRMLGNGRPFVIEIKEPK--IRKVNLEELASKVNESGN--VEIIN 334
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIR 479
++ G + + E K K Y A V + +E+ ++ L + + I Q+TP R
Sbjct: 335 VE-YGVKKDVHFFKNEPHK-KTYLAHVECEEKVSNEE---VAELVKKLEDLTIDQRTPDR 389
Query: 480 VLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL 539
V HRR+ L R + + I + F L + G YIKE ++ D GRT PS+ +L
Sbjct: 390 VSHRRADLVRVRKVYKAWPHMIDDYN--FELKIFCDGGLYIKELINSDEGRTTPSVSELL 447
Query: 540 GCRAEILQLDVTDV 553
+ LDV DV
Sbjct: 448 NKKCICKFLDVLDV 461
>gi|118373327|ref|XP_001019857.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|89301624|gb|EAR99612.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 427
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 301 VNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRG 360
V P +++ IY G Y KYSR +SQT W ID ++ + SI+E I +ILP +
Sbjct: 277 VTSPAQIDVSLSHASIYIMGNYCKYSRYMSQTPWFIDGVKLYDTSIQEEIANDILPNFKC 336
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP--SELLVKEIESKINSLENKLVRVK 418
D YKF GREDIDVRMLG+GRPF+ EIQN R V S+ +K E+ +N+++ + +V
Sbjct: 337 DDYKFSTGGREDIDVRMLGNGRPFVIEIQNPRRVHSVSDEDLKNYEAHLNNVKTE-CKVN 395
Query: 419 NLKIVGSQGWTLMREGE 435
+LK + + ++++ +
Sbjct: 396 SLKFTDVKCFEVLKQNQ 412
>gi|124028500|ref|YP_001013820.1| putative pseudouridylate synthase [Hyperthermus butylicus DSM 5456]
gi|123979194|gb|ABM81475.1| predicted pseudouridylate synthase [Hyperthermus butylicus DSM
5456]
Length = 441
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 11/241 (4%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE-ERMGEASIEEIIGGNILP-MCRGDSYKFHAAGRED 372
P+ G Y K +R VSQ+ W+ ER S+E+ G IL + D+ HA+GRED
Sbjct: 208 PLLLRGWYWKLARRVSQSAWVTRRGERRYPFSVED--GLFILAEVFEADNIVIHASGRED 265
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
D RMLG+GRPF+ E + R+ S L V E+E+ NS LV K L ++
Sbjct: 266 ADARMLGTGRPFIVEAKRPRKRISGLAVAEVEA--NSYAAGLVEYKLLSEARRSDVASIK 323
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ K Y ALV + RP+ +++ + L+E I+Q+TP RV HRR + REKI
Sbjct: 324 GETQHRAKLYKALVVVERPISEDELK---GLEEAFHMRSIMQRTPRRVRHRRPDVVREKI 380
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ +K ++A + ++H + G YIKE V GD G T PS RA +LDV
Sbjct: 381 VFSVKTRQLADNVFEAIIH--AEGGLYIKELVSGDGGDTRPSFAEYFSARAYCAELDVLG 438
Query: 553 V 553
V
Sbjct: 439 V 439
>gi|55379776|ref|YP_137626.1| pseudouridylate synthase [Haloarcula marismortui ATCC 43049]
gi|55232501|gb|AAV47920.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 425
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCDGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVDADELEADINDFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E + K Y V + E Q +L E + I Q+TP RV
Sbjct: 286 LATHE--MVERVKELDAAKTYRMDVEFGDAVDAEALQ--DALAE-LDGATIQQETPQRVT 340
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 341 HRRADITRTRAV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGLLDT 398
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 399 DAVVTALDVIDVQ 411
>gi|150403016|ref|YP_001330310.1| putative pseudouridylate synthase [Methanococcus maripaludis C7]
gi|150034046|gb|ABR66159.1| THUMP domain protein [Methanococcus maripaludis C7]
Length = 469
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 126/255 (49%), Gaps = 29/255 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRW--------------IIDEERMGEASIEEIIGGNILPMCR 359
P++ GRY K R + Q+ W ++ M S+EEII + + +
Sbjct: 220 NPVFIKGRYKKLVRGIPQSHWHCRSCKGKGCEKCNFTGKQYM--TSVEEIIAEPFMDVMK 277
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
G S H AGREDIDVRMLG+GRPF+ EI+ + ++ ++E+ SK+N+ E V + N
Sbjct: 278 GSSEALHGAGREDIDVRMLGNGRPFVIEIKEPK--VRKVNLEELASKVNASET--VEILN 333
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCYQILQKTPI 478
++ G + + E K K Y A V + E+ + ++ L++ V I Q+TP
Sbjct: 334 VE-YGLKKDVHFFKNEPHK-KTYLAQVECDEKVSSEEVAELVNKLEDLV----IDQRTPD 387
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ L R + + I + F L + G YIKE + D GRT PS+ +
Sbjct: 388 RVSHRRADLVRVRKVYKAWPHMIDDYN--FELKIFCDGGLYIKELISSDEGRTTPSVSEL 445
Query: 539 LGCRAEILQLDVTDV 553
L + LDV DV
Sbjct: 446 LNNKCICKFLDVLDV 460
>gi|242398596|ref|YP_002994020.1| RNA-binding protein, containing THUMP domain [Thermococcus
sibiricus MM 739]
gi|242264989|gb|ACS89671.1| RNA-binding protein, containing THUMP domain [Thermococcus
sibiricus MM 739]
Length = 390
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 41/251 (16%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCR------GDSYKFHAA 368
P++ GRY K R + QT +E + ASI +CR G FH A
Sbjct: 165 PLHVYGRYRKLVRGIPQTPLKGFKESV--ASI----------ICRPFSKATGGKCVFHGA 212
Query: 369 GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGW 428
GREDIDVRMLG+GRPF+ E++ R + ++ +KEI +IN + V V +L+ + ++
Sbjct: 213 GREDIDVRMLGNGRPFVVEVK--RPIKRKINLKEIAEEINR--SGKVEVLDLECISAK-- 266
Query: 429 TLMREGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
+AEK +K+Y ALV + + E+ + + + ++ +I Q TP RVL
Sbjct: 267 ------KAEKVLTPNHKKEYEALVCVEEGISREEVENVV---KALKRAEIHQMTPRRVLG 317
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR L R + I+ ++ E I ++F L + T G YIKE + GD GRT PS+ +L
Sbjct: 318 RRVNLVRIRRIHEIEGELI--DEKHFKLRLITDGGLYIKELISGDGGRTIPSVKEVLRKN 375
Query: 543 AEILQLDVTDV 553
A +LDV ++
Sbjct: 376 AWCEKLDVLNI 386
>gi|222480348|ref|YP_002566585.1| pseudouridylate synthase [Halorubrum lacusprofundi ATCC 49239]
gi|332319809|sp|B9LQ94.1|PUS10_HALLT RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|222453250|gb|ACM57515.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
49239]
Length = 427
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + +++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRAEVAFDADVD---ADALAAAVEELEGTTVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E +++ ++ + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDARHAIVEIHGEGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVVAVE 413
>gi|341581723|ref|YP_004762215.1| putative pseudouridylate synthase [Thermococcus sp. 4557]
gi|340809381|gb|AEK72538.1| putative pseudouridylate synthase [Thermococcus sp. 4557]
Length = 386
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 29/246 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P+Y GRY K R + QT EE S+ II G F AGRED+
Sbjct: 161 NPLYIYGRYRKLVRGIPQTPLPDFEE-----SVASIIC-RAFSRASGGKCVFKGAGREDV 214
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRMLG+GRPF+ EI+ ++ +L + EI KIN+ + V V L V ++
Sbjct: 215 DVRMLGNGRPFIVEIKRPKK--RKLDLDEIAGKINA--SGKVEVLGLHFVSAK------- 263
Query: 434 GEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
EAE+ +K+Y ALV + + E+ + + ++ +I Q+TP RV R+
Sbjct: 264 -EAEEVLTRNHRKEYLALVLVEEGVTPEEAEEAAR---KLKGLEIRQRTPWRVRKARADK 319
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R + ++ + + G ++F L + T G YIKE + GD GRT PS+ +LG A +
Sbjct: 320 VRVRRVHEAEARWLDG--KHFELRLVTDGGLYIKELISGDKGRTKPSVSDLLGKPAWCER 377
Query: 548 LDVTDV 553
LDV ++
Sbjct: 378 LDVMNI 383
>gi|448495547|ref|ZP_21610006.1| pseudouridylate synthase [Halorubrum californiensis DSM 19288]
gi|445688073|gb|ELZ40345.1| pseudouridylate synthase [Halorubrum californiensis DSM 19288]
Length = 427
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 27/249 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ ++E +A K+ + A + + + D + L+ T + Q TP RV
Sbjct: 288 LATYDMVERVKEHDAAKRYR-AQVTFDADVDADALAAAVGELEGTT----VEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + M E ++ + + + G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEMTAE--LDEPRHATVEIRGEGGLYIKELISSDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDV 550
AE+ LDV
Sbjct: 401 GAEVTALDV 409
>gi|448641403|ref|ZP_21678013.1| pseudouridylate synthase [Haloarcula sinaiiensis ATCC 33800]
gi|445760817|gb|EMA12073.1| pseudouridylate synthase [Haloarcula sinaiiensis ATCC 33800]
Length = 425
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 27/256 (10%)
Query: 317 YFGGRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMC 358
+ GRY K R++ QT+W ++ + G + S+E++ +
Sbjct: 165 FIYGRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCDGSGYRYDESVEQLSAPVVREAM 224
Query: 359 RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVK 418
G+ FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN + V V
Sbjct: 225 DGEEAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVDADELEADINDFADGKVEVT 282
Query: 419 NLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPI 478
+L + + G + R E + K Y V + E Q +L E + I Q+TP
Sbjct: 283 DLHLA-THG-MVERVKELDASKTYRMDVEFGDAVDAEALQ--DALAE-LDGATIQQETPQ 337
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +
Sbjct: 338 RVTHRRADITRTRAV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGL 395
Query: 539 LGCRAEILQLDVTDVK 554
L A + LDV DV+
Sbjct: 396 LDTDAVVTALDVIDVQ 411
>gi|448501580|ref|ZP_21612282.1| pseudouridylate synthase [Halorubrum coriense DSM 10284]
gi|445695011|gb|ELZ47124.1| pseudouridylate synthase [Halorubrum coriense DSM 10284]
Length = 427
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 117/253 (46%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVVEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R + K+Y A V + + + E + Q TP RV
Sbjct: 288 LATYE--MVERVKGHDAAKRYRAAVTFDADVDADALADAVAALEGA---TVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + + E ++ + + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASMTRERDVYEVTAE--LDDRRHATVEIRGEGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVLAVE 413
>gi|171185968|ref|YP_001794887.1| putative pseudouridylate synthase [Pyrobaculum neutrophilum V24Sta]
gi|170935180|gb|ACB40441.1| THUMP domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 411
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 118/250 (47%), Gaps = 32/250 (12%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGR 370
R P+ G YLK SR VSQ + D + AS+ E + ++ + G + H +GR
Sbjct: 188 VVRNPLLIEGVYLKLSRRVSQAKKFGDVK----ASLLEKLA-HVRDLYGGVEHLIHVSGR 242
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
ED D RMLG GRP + E++N S+ L + + I +G+T+
Sbjct: 243 EDSDARMLGPGRPLVIEVKNP-------------SRYRGLPGRYEDGDVIYI--PRGFTV 287
Query: 431 MREGEAEKQKQ------YAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
E K K Y ALV+ PL + D + L ILQ TP R+ R
Sbjct: 288 REEIRRLKDKAKTDIKLYRALVYSENPLTETDLAKLGELTGKT----ILQYTPRRI-KRL 342
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
SP +R + + ++ S F L++ Q G Y+KEF+HGD GRT PS+ IL E
Sbjct: 343 SPRKRRTRMVYELAWRLV-SPHVFELYIRCQGGLYVKEFIHGDGGRTTPSVAEILNTYLE 401
Query: 545 ILQLDVTDVK 554
+L+LDV ++
Sbjct: 402 VLELDVLSIE 411
>gi|448449360|ref|ZP_21591689.1| pseudouridylate synthase [Halorubrum litoreum JCM 13561]
gi|445813451|gb|EMA63429.1| pseudouridylate synthase [Halorubrum litoreum JCM 13561]
Length = 427
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + ++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRARVTFDADVD---ADALAEAVEELTGATVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E S++ + + + G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDSRHATVEIRGEGGLYIKELISSDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVLAVE 413
>gi|448480060|ref|ZP_21604454.1| pseudouridylate synthase [Halorubrum arcis JCM 13916]
gi|448507102|ref|ZP_21614816.1| pseudouridylate synthase [Halorubrum distributum JCM 9100]
gi|448523904|ref|ZP_21619091.1| pseudouridylate synthase [Halorubrum distributum JCM 10118]
gi|445699203|gb|ELZ51236.1| pseudouridylate synthase [Halorubrum distributum JCM 9100]
gi|445700977|gb|ELZ52968.1| pseudouridylate synthase [Halorubrum distributum JCM 10118]
gi|445822245|gb|EMA72015.1| pseudouridylate synthase [Halorubrum arcis JCM 13916]
Length = 427
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + ++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRARVTFDADVD---ADALAEAVEELTGATVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E S++ + + + G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDSRHATVEIRGEGGLYIKELISSDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVLAVE 413
>gi|448423373|ref|ZP_21581930.1| pseudouridylate synthase [Halorubrum terrestre JCM 10247]
gi|445683665|gb|ELZ36056.1| pseudouridylate synthase [Halorubrum terrestre JCM 10247]
Length = 427
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + ++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRARVTFDADVD---ADALAEAVEELTGATVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E S++ + + + G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDSRHATVEIRGEGGLYIKELISSDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVLAVE 413
>gi|448654673|ref|ZP_21681599.1| pseudouridylate synthase [Haloarcula californiae ATCC 33799]
gi|445766521|gb|EMA17648.1| pseudouridylate synthase [Haloarcula californiae ATCC 33799]
Length = 425
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLERDIPQTKWPCNDCNGTGLWQGEPCDGCDGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ ++ E+E+ IN + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRK--RDVDADELEADINDFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E + K Y V + + Q +L E + I Q+TP RV
Sbjct: 286 LATHE--MVERVKELDASKTYRMDVEFGDAVDADALQ--DALTE-LDGATIQQETPQRVT 340
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 341 HRRADITRTRAV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDEGRTEPSLAGLLDT 398
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 399 DAVVTALDVIDVQ 411
>gi|159905240|ref|YP_001548902.1| putative pseudouridylate synthase [Methanococcus maripaludis C6]
gi|159886733|gb|ABX01670.1| THUMP domain protein [Methanococcus maripaludis C6]
Length = 470
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 126/255 (49%), Gaps = 29/255 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRW--------------IIDEERMGEASIEEIIGGNILPMCR 359
P++ GRY K R + Q+ W ++ M S+EEII + + +
Sbjct: 221 NPVFIKGRYKKLVRGIPQSHWHCRSCKGKGCEKCNFTGKQYM--TSVEEIIAEPFMDVMK 278
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKN 419
G S H AGREDIDVRMLG+GRPF+ EI+ + ++ ++E+ SK+N+ + V + N
Sbjct: 279 GSSEALHGAGREDIDVRMLGNGRPFVIEIKEPK--VRKVNLEELASKVNA--SGTVEIIN 334
Query: 420 LKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF-QTISSLKETVRCYQILQKTPI 478
++ G + + E K K Y A V + E+ + ++ L++ V I Q+TP
Sbjct: 335 VE-YGVKKDVHFFKNEPHK-KTYLAQVECEEKVSSEEVAELVNKLEDLV----IDQRTPD 388
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ L R + + I + F L + G YIKE + D GRT PS+ +
Sbjct: 389 RVSHRRADLVRVRKVYKAWPHMIDDYN--FELKIFCDGGLYIKELISSDEGRTTPSVSEL 446
Query: 539 LGCRAEILQLDVTDV 553
L + LDV DV
Sbjct: 447 LNNKCICKFLDVLDV 461
>gi|91093761|ref|XP_969744.1| PREDICTED: similar to coiled-coil domain containing 139 [Tribolium
castaneum]
gi|270012975|gb|EFA09423.1| hypothetical protein TcasGA2_TC010634 [Tribolium castaneum]
Length = 484
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/521 (23%), Positives = 230/521 (44%), Gaps = 79/521 (15%)
Query: 51 DLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLG-----EQADLHQNISSVEPNICR 105
++++K C RC+ R G + + + L + G E+ + + + N C
Sbjct: 13 EIINKGCCKRCVLRYLGQCKTLLTFEHPNTCLVN-FGYMDPIEEFEEERKAKIRKSNPCS 71
Query: 106 SCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENK 165
CLG+LQ + +E AC+ I+E + + +F ++ P IL ++
Sbjct: 72 VCLGLLQ-------DPAIEEMFACEGLNNISEYLSQ------TFVAYITFPTCILIRDHS 118
Query: 166 LSLYVKRKYRSEAWFKDR-SISECSSTKDALKFALTNPL-ETLLDVKCGIS--TFHIRLT 221
+ L++KR F +R S+ +A ++A+ L +TL +S T H
Sbjct: 119 MKLHLKR------LFPNRFDCSKVIKVNNAWRYAVEERLSQTLKKSYSHLSKLTLHFYTK 172
Query: 222 YSRVEASIR-IQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
Y + + +Q ++ + K N L+T+ D ++V+ +P+
Sbjct: 173 YQLEDDELEAVQRVLKNLPKNNLSKHCVYNMLETISDNEF-----GNLVNVPPKVPLYAV 227
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
+ + L+ F I+ G YLKYSR++ Q + +
Sbjct: 228 TLDTLK------------------------FFSEAIHLIGNYLKYSRDLFQVQNPFNTAS 263
Query: 341 MGEASIEEIIGGNILPMCRGDSYK---FHAAGREDIDVRMLGSGRPFLFEIQNAR-EVPS 396
+ + SIE II + + +K F A+G +D ++R+LGSGR F ++ + + E S
Sbjct: 264 L-DFSIETIIVDAVRNV--ASDFKDAVFKASGFDDNNIRVLGSGRTFHLQLNDPKFESVS 320
Query: 397 ELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDED 456
+ + IE I +KL+ V+NL+ + ++ + E + Y AL + +
Sbjct: 321 KKQCQVIEGIIK--RSKLMAVRNLRECDKRDICILLDNEQRGARSYKALCMVYKC----- 373
Query: 457 FQTISSLKETVRCYQIL---QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMC 513
+ I V Y+ L QK P++V H+R ++ + I +K K+ G+ L +C
Sbjct: 374 -KNIDYCVNAVNMYESLNVCQKIPLKVFHKRKFYKKRRKIFQIKARKLKGN--LVELDLC 430
Query: 514 TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
TQ G + EFV+GDLGRT PS+ I+ + ++L +D+ D +
Sbjct: 431 TQCGFSVPEFVNGDLGRTKPSLCDIMNAKVDVLAVDIVDFQ 471
>gi|452076937|gb|AGF92910.1| conserved hypothetical protein CHP01213 [uncultured organism]
Length = 327
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 25/246 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSYKFHA 367
G+Y KY R + QT W E + E S++EII + R FH
Sbjct: 92 GQYDKYVRGIPQTVWHCKECGGRGCAECNYTGKKYEESVQEIIQAPFIDASRAKDVSFHG 151
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+D R G R F+ E++ + EL I K+N ++ V+ +I ++
Sbjct: 152 AGREDVDARCFGR-REFVLELKRPKNRNLEL--GRIAKKLNESQDS---VEVFRISRTEK 205
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
+ + K Y A+V +S L++ D + + + V Q+TP RV HRR+
Sbjct: 206 DRVEEVKTEDSDKSYLAIVELSEKLENLDTEKLEEIPGLVE-----QRTPERVSHRRADK 260
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R + + W++ EK+ S L + T+AGTY+KE + GD GRT PS+ LGC A +
Sbjct: 261 VRRRRVYWLRPEKLGESR--LELTLKTEAGTYVKELISGDGGRTKPSVAEKLGCEARCTR 318
Query: 548 LDVTDV 553
LDV ++
Sbjct: 319 LDVLEI 324
>gi|448679234|ref|ZP_21690071.1| pseudouridylate synthase [Haloarcula argentinensis DSM 12282]
gi|445771332|gb|EMA22389.1| pseudouridylate synthase [Haloarcula argentinensis DSM 12282]
Length = 425
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE---------------ERMG---EASIEEIIGGNILPMCRGD 361
GRY K R++ QT+W ++ + G + S+E++ + G+
Sbjct: 168 GRYRKLKRDIPQTKWPCNDCNGTGLWQGEPCDGCDGSGYRYDESVEQLSAPVVREAMDGE 227
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RML SGRPF+ E+ R+ + V +ES IN+ + V V +L
Sbjct: 228 EAVFHGAGREDVDARMLDSGRPFVIEVMEPRKRDVDADV--LESDINAFADGKVEVTDLH 285
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E + K Y V + + Q +L E + I Q+TP RV
Sbjct: 286 LATHE--MVERVKELDASKTYRMDVEFGDAVDADALQ--DALAE-LDGATIQQETPQRVT 340
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + E ++ L + + G Y+KE V D GRT PS+ +L
Sbjct: 341 HRRADITRTRTV--YDAEGELTDDRHAELRIHGEGGLYVKELVSSDGGRTEPSLAGLLDT 398
Query: 542 RAEILQLDVTDVK 554
A + LDV DV+
Sbjct: 399 DAVVTALDVIDVQ 411
>gi|399577794|ref|ZP_10771546.1| hypothetical protein HSB1_35850 [Halogranum salarium B-1]
gi|399237236|gb|EJN58168.1| hypothetical protein HSB1_35850 [Halogranum salarium B-1]
Length = 429
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E + + S+E++ +L + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECDGSGYQGKQPCDYCGGSGYLYDESVEQLSAPVVLDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + V+++E IN+ V V+ L+
Sbjct: 230 EALFHGAGREDVDALMLGTGRPFVIEVKEPRR--RSIDVEQLEGDINAFAEGKVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K Y A V + +E + + + + Q TP RV
Sbjct: 288 LATYD--MVERVKELDANKTYRAEVEFGDDVTEEGLEEALAELDGA---TVEQYTPHRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L R + + E +++ + + G YIKE V GD GRTNPS+ ILG
Sbjct: 343 HRRASLTRTRDVYSATGE--LHDARHATVDIHGAGGLYIKELVSGDEGRTNPSLAGILGV 400
Query: 542 RAEILQLDVTDV 553
A + LDV V
Sbjct: 401 DAVVTALDVVAV 412
>gi|379003323|ref|YP_005258995.1| hypothetical protein Pogu_0361 [Pyrobaculum oguniense TE7]
gi|375158776|gb|AFA38388.1| TIGR01213 family protein [Pyrobaculum oguniense TE7]
Length = 411
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 110/250 (44%), Gaps = 44/250 (17%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGE---------ASIEEIIGGNILPMCRGDSY 363
R PI GGRYLK R ++Q + R G A + + GG + +
Sbjct: 190 RNPILIGGRYLKLGRKIAQAK------RFGNVRTTLLEKLAYLRDTFGG--------EDH 235
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GRED D RMLGSGRP + E++ ++ + +K V +
Sbjct: 236 VIHVSGREDSDARMLGSGRPLVVEVKQPLRYTAQ---------VAPFRDKDVIFLPVGFT 286
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV--L 481
++E K Y LV PL+ +D +S+L + Q TP R+ L
Sbjct: 287 DRNEVRRLKEKAKTDIKLYRVLVLSESPLKQDDLSKLSALSGAT----VTQYTPRRIKRL 342
Query: 482 HRRSPLEREKI-INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
H R R + W + S F L++ Q G YIKEFVHGD GRT P++ +L
Sbjct: 343 HPRKKRVRMVYDVAWRLV-----SPHVFELYIRCQGGLYIKEFVHGDGGRTAPNVAELLN 397
Query: 541 CRAEILQLDV 550
R E+L+LDV
Sbjct: 398 TRLEVLELDV 407
>gi|345005255|ref|YP_004808108.1| hypothetical protein [halophilic archaeon DL31]
gi|344320881|gb|AEN05735.1| Conserved hypothetical protein CHP01213 [halophilic archaeon DL31]
Length = 427
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 112/249 (44%), Gaps = 27/249 (10%)
Query: 320 GRYLKYSRNVSQTRW----IIDEERMGEA--------------SIEEIIGGNILPMCRGD 361
GRY K R++ QT+W R G S+E++ + + G
Sbjct: 170 GRYRKLERDIPQTKWPCSACTGSGRQGREPCPECDGLGYRYPESVEQLSAPVVEDVMDGI 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D RMLG+GRPF+ E+++ R ++ +E IN+ V V+ L
Sbjct: 230 GSTFHGAGREDVDARMLGTGRPFVIEVEDPRR--RDIDTDRLEGDINAFAEGKVEVEGLT 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + + R E K Y A V + E F +L E + + Q TP RV
Sbjct: 288 LATHE--MVERVKRHEASKTYEAQVAFGDDVTPEAF--ADALAE-LDGATVEQDTPKRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R + + + E + +H G YIKE + D GRT PS+ +LG
Sbjct: 343 HRRASKTRVRDVYEVDGELEDSRTASVTVHGA--GGLYIKELISSDEGRTTPSLAGLLGV 400
Query: 542 RAEILQLDV 550
AE+ LDV
Sbjct: 401 DAEVTALDV 409
>gi|300706673|ref|XP_002995583.1| hypothetical protein NCER_101471 [Nosema ceranae BRL01]
gi|239604747|gb|EEQ81912.1| hypothetical protein NCER_101471 [Nosema ceranae BRL01]
Length = 304
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 119/255 (46%), Gaps = 61/255 (23%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+PI+ G Y+K SR ++QT I + + S+ + I I + KF +GREDI
Sbjct: 67 SPIFLYGEYIKLSREMTQTPLKIKGKLKCKRSVSDFIN-QIKEHYKSKDVKFIPSGREDI 125
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKL-------VRVKNLKIVGSQ 426
DV+M+G GRPFL ++ +E N +++ V+++N V
Sbjct: 126 DVKMIG-GRPFLLKV--------------VEPTCNLFNDRISLHLYDNVKIQNFMQVTKD 170
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETV--RCYQILQKTPIRVLHRR 484
L+ GE E+ K Y I+S KE + + Y++LQKTP+RVLHRR
Sbjct: 171 IKKLILCGEKEENKVYRLF--------------IASKKEIIFEKEYKLLQKTPLRVLHRR 216
Query: 485 SPLEREKIINWMKIEK----------------------IAGSSQYFLLHMCTQAGTYIKE 522
+ L R+K I ++ + Y+ + + AGTYIKE
Sbjct: 217 ANLVRKKYIEILETNLCKDLQNDFCYSEDLKKEFSENILPVDFYYYTVILKASAGTYIKE 276
Query: 523 FVHGDLGRTNPSIGS 537
FVHGDLGRT PS+ +
Sbjct: 277 FVHGDLGRTCPSLST 291
>gi|145591972|ref|YP_001153974.1| pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514]
gi|332319821|sp|A4WLQ5.1|PUS10_PYRAR RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|145283740|gb|ABP51322.1| conserved hypothetical protein [Pyrobaculum arsenaticum DSM 13514]
Length = 411
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 110/250 (44%), Gaps = 44/250 (17%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGE---------ASIEEIIGGNILPMCRGDSY 363
R PI GGRYLK R ++Q + R G A + + GG + +
Sbjct: 190 RNPILIGGRYLKLGRKIAQAK------RFGNVRTTLLEKLAYLRDTFGG--------EDH 235
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GRED D RMLGSGRP + E++ ++ + +K V +
Sbjct: 236 VIHVSGREDSDARMLGSGRPLVVEVKQPLRYTAQ---------VAPFRDKDVIFLPVGFT 286
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV--L 481
++E K Y LV PL+ +D +S+L + Q TP R+ L
Sbjct: 287 DRNEVRRLKEKAKTDIKLYRVLVLSESPLKQDDLSKLSALSGAT----VTQYTPRRIKRL 342
Query: 482 HRRSPLEREKI-INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
H R R + W + S F L++ Q G Y+KEFVHGD GRT P++ +L
Sbjct: 343 HPRKKRVRMVYDVAWRLV-----SPHVFELYIRCQGGLYVKEFVHGDGGRTAPNVAELLN 397
Query: 541 CRAEILQLDV 550
R E+L+LDV
Sbjct: 398 TRLEVLELDV 407
>gi|126460329|ref|YP_001056607.1| pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548]
gi|126250050|gb|ABO09141.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
Length = 411
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 311 CFRTPIYFGGRYLKYSRNVSQTRWIIDEERMG--EASIEEIIGGNILPMCRGDSYKFHAA 368
+ P+ G YLK SR SQ + + G +A++ E + + + G + HA
Sbjct: 188 VLKNPVLLEGIYLKLSRRTSQAK------KFGGVKATLLEKLQ-YVRDIFGGVEHVIHAG 240
Query: 369 GREDIDVRMLGSGRPFLFEI-QNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
GRED D RMLG+GRP + E+ Q AR + + L + V K + V +
Sbjct: 241 GREDADARMLGTGRPVVVEVKQPAR----------YRADVPPLVDSDVVFKPIGYVNREE 290
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
++E K Y ALV RPL E+ +S L ++Q TP R+ R SP
Sbjct: 291 VRRIKEKAKTDIKLYRALVLSERPLTAEELSKVSELSRRT----VVQFTPRRI-KRLSP- 344
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
+++++ I S F L++ Q G Y+KEF+HGD GRT PS+ IL + ++L+
Sbjct: 345 KKKRVRMVYDIHARLVSPHVFELYVRCQGGLYVKEFIHGDGGRTTPSVAEILNAQLDVLE 404
Query: 548 LDVTDV 553
LDV V
Sbjct: 405 LDVLAV 410
>gi|91178019|gb|ABE27265.1| unknown [Nosema bombycis]
Length = 303
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 119/241 (49%), Gaps = 23/241 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+P+Y G Y K+SR ++QT I + S+ + I + F +GREDI
Sbjct: 66 SPVYIYGEYKKFSREMTQTPLRIKGRLKCQKSVSDFTE-QIKEFYKAKEVVFIPSGREDI 124
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DV LG GR FL I +E LL + I E +L+ N K V + + E
Sbjct: 125 DVMNLG-GRSFLLVI---KEPTRNLLASSFDLSIYP-EIELI---NFKKVTKKAKDHILE 176
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKII 493
GE +K+K Y L+ + E + Y I QKTP+RVLHRR+ + RE+ +
Sbjct: 177 GERDKKKVYRCLIACRNKI------------EFHKKYTIHQKTPLRVLHRRANITREREV 224
Query: 494 NWMKIE-KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ +E + G + + + AGTYIKEFV+GD GRT PS+ S A+++ LDV
Sbjct: 225 EILDVEERTEGDFMIYQVELKATAGTYIKEFVNGDFGRTCPSL-SAKDSYADLIYLDVLS 283
Query: 553 V 553
+
Sbjct: 284 I 284
>gi|448440365|ref|ZP_21588528.1| pseudouridylate synthase [Halorubrum saccharovorum DSM 1137]
gi|445690261|gb|ELZ42476.1| pseudouridylate synthase [Halorubrum saccharovorum DSM 1137]
Length = 427
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 27/249 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + ++S IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQSDINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + +++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRAQVAFDADVD---ADALAAAVEELEGTTVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ L RE+ + + ++ + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASLTRERDVYEATAD--LDDPRHATVEIRGAGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDV 550
AE+ LDV
Sbjct: 401 GAEVTALDV 409
>gi|257052069|ref|YP_003129902.1| pseudouridylate synthase [Halorhabdus utahensis DSM 12940]
gi|256690832|gb|ACV11169.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
Length = 449
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 119/272 (43%), Gaps = 45/272 (16%)
Query: 320 GRYLKYSRNVSQTRW---------IIDEE----------RMGEASIEEIIGGNILPMCRG 360
GRY K R++ QT W +D E R E S+EE+ + G
Sbjct: 168 GRYRKIKRDIPQTEWPCNDCNATGTVDGEPCEGCGGTGYRYDE-SVEELTAPVVREAMDG 226
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
FH AGRED+D RMLG+GRPF+ E++ R ++ V +++ IN + V V L
Sbjct: 227 SRAVFHGAGREDVDARMLGTGRPFVIEVKEPRT--RDVDVGDLQDDINEFADGKVEVDGL 284
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ + R + K Y V + + D D T+ + + I Q+TP RV
Sbjct: 285 ALATHD--MVERVKAHDASKTYRMTVALDK---DVDAPTLEAALAELEGKTIEQRTPNRV 339
Query: 481 LHRRSPLEREK---IINWMKIEKIAG---------------SSQYFLLHMCTQAGTYIKE 522
HRR + R + I+ AG ++ + + + + G Y+KE
Sbjct: 340 AHRRGDIVRTRDVYAIDGKLDPDGAGMDLSVGAEADDSGTSTANHATIEVHGEGGLYVKE 399
Query: 523 FVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ GD GRT PS+ +L AE+ LDV V+
Sbjct: 400 LISGDEGRTEPSLAGVLDTPAEVTALDVLQVE 431
>gi|223478639|ref|YP_002583293.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
gi|214033865|gb|EEB74691.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
Length = 385
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 41/252 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA------ 367
P+Y GRY K R + QT E+ + ASI +CR S F
Sbjct: 161 NPVYVYGRYRKLVRGIPQTPLPDFEDSV--ASI----------ICRAFSKAFEGKCVFKG 208
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRPF+ E+++ + +L +I +IN+ + V V NL+ V ++
Sbjct: 209 AGREDVDVRMLGNGRPFIVEVKSPKRRKVDL--GKIAEEINA--SGKVEVLNLRFVSAK- 263
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
EAE+ K+Y ALV + + E+ + ++ + +I Q+TP RV
Sbjct: 264 -------EAEEVLTKNHMKEYLALVLVEEGVTPEEAEEVAR---KLMGLEIHQRTPWRVR 313
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
R+ R + ++ + I ++F L + T G YIKE V GD GRT PS+ +LG
Sbjct: 314 KARADKVRVRKVHEAEARWI--DEKHFELRLITDGGLYIKELVSGDRGRTKPSVSDLLGK 371
Query: 542 RAEILQLDVTDV 553
+A +LDV ++
Sbjct: 372 KAWCERLDVLNI 383
>gi|429963054|gb|ELA42598.1| TIGR01213 family protein [Vittaforma corneae ATCC 50505]
Length = 323
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 31/243 (12%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+P+Y G+Y+K SR + QT I+ ++ + GN S KF GREDI
Sbjct: 92 SPLYIYGKYVKMSREMCQTPLFINGVEKTCKNVSDF-SGNFQKFFGASSVKFMGCGREDI 150
Query: 374 DVRMLGSGRPFLFEIQN-AREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
DVR L GRPF+ EI N R + + + ++ +I+ ++ +V+ + +
Sbjct: 151 DVRCL-KGRPFVLEIVNPTRNLNPDQISVKLYKEIDIVDCYVVKRECKDFINC------- 202
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
QK Y L++ L E + Y I QKTP+RVLHRR+ + R K
Sbjct: 203 ---TSPQKFYNLLIFSENKLNFE------------KIYNIEQKTPLRVLHRRANMVRNKQ 247
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I +++ + Y+ + + +G YIKE+V GD RT P++G A++L+LDV
Sbjct: 248 IEVLRVSMLEKDGYYYDIDIKASSGAYIKEWVTGDFNRTIPNLG------ADLLELDVIC 301
Query: 553 VKM 555
V +
Sbjct: 302 VDL 304
>gi|402470863|gb|EJW04900.1| TIGR01213 family protein [Edhazardia aedis USNM 41457]
Length = 341
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 42/249 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
TPI+ G+Y+K +R +SQT +I + + E S+ + L S F GREDI
Sbjct: 107 TPIFVYGKYIKLNREMSQTPMLIGGKLVTEKSVSDFKKYFGLHF-DATSVVFVTGGREDI 165
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINS--LENKLVRVKNLK--IVGSQGWT 429
+VR G RPFL +I ++ L + +I K+ S N L VK+++ I G + +
Sbjct: 166 NVRCFG--RPFLLKILEPKQ---NLNIFQIPLKLYSSIKINDLYVVKDIRDQIFGDENLS 220
Query: 430 LMREGEAEKQKQYAALV-----WISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
+K+Y A V WI Y++ Q+TP+RVLHRR
Sbjct: 221 ---------RKKYGATVFCKGDWIVNS----------------GAYELEQRTPLRVLHRR 255
Query: 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 544
+ L R++ I +E I + + + + T AGTY+KEFV+GD GRT PS+ SI +
Sbjct: 256 ANLNRKRKIEI--VETIKKDIETYYVELYTDAGTYVKEFVNGDFGRTVPSLTSINRYFCD 313
Query: 545 ILQLDVTDV 553
++LDV ++
Sbjct: 314 CIELDVLEI 322
>gi|18314021|ref|NP_560688.1| putative pseudouridylate synthase [Pyrobaculum aerophilum str. IM2]
gi|18161599|gb|AAL64870.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 411
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERM---GEASIEEIIGGNILPMCRGDSYKFHAAG 369
R P+ G YLK SR VSQ + D + I E+ GG + H +G
Sbjct: 190 RNPLLIEGVYLKLSRRVSQAKKFGDVKSTLWDKLVYIREVFGGK--------EHVIHVSG 241
Query: 370 REDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWT 429
RED D RMLG+GRP + E++ + + I + + + +
Sbjct: 242 REDSDARMLGTGRPLVVEVKQP---------IKYDGAIPPFRDGDIIFTPIGFTNREEVR 292
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLE- 488
++E K Y ALV RPL E+ I L I+Q TP R+ R SP +
Sbjct: 293 RLKEKAKTDIKLYRALVLSERPLTVEELNKIGELSGKT----IIQYTPRRI-KRISPRKK 347
Query: 489 REKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
R +++ + +I S + F L++ Q G Y+KEF+HGD GRT PS+ IL E+L+L
Sbjct: 348 RVRMVYELAWRQI--SPRVFELYVRCQGGLYVKEFIHGDGGRTTPSVSEILNTHLEVLEL 405
Query: 549 DVTDV 553
DV V
Sbjct: 406 DVLSV 410
>gi|315230159|ref|YP_004070595.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
gi|315183187|gb|ADT83372.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
Length = 389
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 17/239 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y GRY K R + QT + + S+ II +G FH AGRED+D
Sbjct: 165 PLYIYGRYRKLVRGIPQTPL-----KGFKESVASIICRPFSKATKGKCI-FHGAGREDVD 218
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
VRMLG+GRPF+ EI+ + + ++ +++I +IN ++K V V +LK + + + +
Sbjct: 219 VRMLGNGRPFVVEIK--KPIKRKIDLEKIAQEIN--QSKKVEVLDLKFITRE--EMEKIL 272
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
+ +K+Y ALV++ + +ED + + E ++ I Q+TP RVL RR+ + R + +
Sbjct: 273 TSNHKKEYEALVYVEEGITEEDVKRVV---EKLQNCTIYQRTPRRVLRRRADIVRVRKVY 329
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+K E + ++ L + T G YIKE + GD GRT PS+ ILG +A +LDV ++
Sbjct: 330 DVKAEIV--DKKHLKLRLITDGGLYIKELISGDNGRTTPSVSEILGKKAWCEKLDVLNI 386
>gi|448540540|ref|ZP_21623550.1| pseudouridylate synthase [Haloferax sp. ATCC BAA-646]
gi|448547429|ref|ZP_21626878.1| pseudouridylate synthase [Haloferax sp. ATCC BAA-645]
gi|445709174|gb|ELZ61006.1| pseudouridylate synthase [Haloferax sp. ATCC BAA-646]
gi|445716237|gb|ELZ67987.1| pseudouridylate synthase [Haloferax sp. ATCC BAA-645]
Length = 427
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE------------------ERMGEASIEEIIGGNILPMCRGD 361
GRY K +R++ QT W E + E S+E + + + G
Sbjct: 170 GRYRKLARDIPQTEWPCRECDGSGYKGKEPCDYCGGSGYLYEDSVEGFVAPVVTDVMDGV 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH AGRED+D MLG+GRPF+ EI R + V+++E IN++ + + V+ L+
Sbjct: 230 DAKFHGAGREDVDALMLGTGRPFVVEIMEPRR--RTVDVEQLEGDINAMADGEIEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R + + K+Y A V + +++ + + I Q TP RV
Sbjct: 288 LATYD--MVERVKKLDASKEYRAAVEFDDDVA---DAELAAALDELTGATIEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + R + + ++ + + + G YIKE V GD GRTNPS+ IL
Sbjct: 343 HRRASITRTRHV--YDATGDLEDPRHATVEIHGEGGLYIKELVSGDEGRTNPSLAGILDT 400
Query: 542 RAEILQLDVTDVK 554
A + LDV V+
Sbjct: 401 GAVVTALDVIAVE 413
>gi|240102966|ref|YP_002959275.1| putative pseudouridylate synthase [Thermococcus gammatolerans EJ3]
gi|239910520|gb|ACS33411.1| RNA-binding protein, pseudouridine synthase family [Thermococcus
gammatolerans EJ3]
Length = 386
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 41/252 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA------ 367
P+Y GRY K R + QT + + + ASI +CR S F
Sbjct: 161 NPVYVYGRYRKLIRGIPQT--PLPDFKDSVASI----------ICRAFSKAFEGKCVFKG 208
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRPF+ EI+ + +L ++ +IN+ + V V +L+ V ++
Sbjct: 209 AGREDVDVRMLGNGRPFIVEIKRPKRRRVDL--GKVAEEINA--SGKVEVLDLRFVSAK- 263
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
EAE+ +K+Y ALV + + E+ + ++ + +I Q+TP RV
Sbjct: 264 -------EAEEVLTKNHRKEYLALVLVEEGVTPEEAEEVAR---RLSGLEIHQRTPWRVR 313
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
R+ R K ++ + + ++F L + T G YIKE V GD GRT PS+ +LG
Sbjct: 314 KARADKVRVKRVHEAEARWV--DEKHFELRLVTDGGLYIKELVSGDKGRTRPSVSELLGK 371
Query: 542 RAEILQLDVTDV 553
+A +LDV ++
Sbjct: 372 KAWCERLDVLNI 383
>gi|302833395|ref|XP_002948261.1| hypothetical protein VOLCADRAFT_88428 [Volvox carteri f.
nagariensis]
gi|300266481|gb|EFJ50668.1| hypothetical protein VOLCADRAFT_88428 [Volvox carteri f.
nagariensis]
Length = 911
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 321 RYLKYSRNVSQTRWII--DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRML 378
RY K R++ Q W + R+ S++E+I +LP+ + K GRED DVRML
Sbjct: 582 RYCKLRRHMPQCPWFVLSTGARIAGVSVQEVIEQFVLPVYGTCTAKMITGGREDADVRML 641
Query: 379 GSGRPFLFEIQNA-------------------REVPSELLVKEIESKINSLENKL----- 414
G GRPF+ E+Q + R P+ L S++ LE ++
Sbjct: 642 GPGRPFVLELQVSPKELPSFVAPRQRVCGGVGRPYPAPLRGHPPVSELRRLEARMRDSKC 701
Query: 415 -VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIL 473
V V+ L G ++ E K+K Y AL W R ED + + +L +
Sbjct: 702 GVTVQGLTPCGPAALESIKAAEELKEKSYRALCWAERAPSLEDLEALKALGRV----EAA 757
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIE---KIAGSSQYFLLHMCTQ 515
Q TP+RVLHRR+ R K W ++E ++G YF+L TQ
Sbjct: 758 QDTPVRVLHRRAAKVRPK---WFQVELAIPVSGRPNYFVLEFRTQ 799
>gi|424814330|ref|ZP_18239508.1| conserved hypothetical protein TIGR01213 family [Candidatus
Nanosalina sp. J07AB43]
gi|339757946|gb|EGQ43203.1| conserved hypothetical protein TIGR01213 family [Candidatus
Nanosalina sp. J07AB43]
Length = 415
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 25/243 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMG------------EASIEEIIGGNILPMCRGDSYKFHA 367
G+Y KYSR + QT W + R S++E I + + KFH
Sbjct: 181 GQYNKYSREIPQTEWHCRKCRGSGCDQCDWTGKQYPTSVQEEIQEPFIRESKAIEAKFHG 240
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
GRED+D + G R F+ E+ + L ++EI+ ++N +K V V ++
Sbjct: 241 GGREDVDAKCFGK-REFVLEL--IEPLNRNLDLEEIQEEVNESTDK-VEVFEMQYTHKDK 296
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
+++ A+K+ Y A V +ED + IS + +I Q+TP RV HRR+
Sbjct: 297 AADIKQKHADKK--YRAQVETEEEFSEEDLKNISEV-----VGEIEQETPERVEHRRAEK 349
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R++ + + EK + F L + +AGTYIKE +HGD GRT P+I ++G AE +Q
Sbjct: 350 VRKREVYDVSFEKTG--EKRFELEVKAEAGTYIKELIHGDEGRTQPNISDLIGTSAECVQ 407
Query: 548 LDV 550
LDV
Sbjct: 408 LDV 410
>gi|327310168|ref|YP_004337065.1| THUMP domain-containing protein [Thermoproteus uzoniensis 768-20]
gi|326946647|gb|AEA11753.1| THUMP domain protein [Thermoproteus uzoniensis 768-20]
Length = 410
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 326 SRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFL 385
SR VSQ R + R +IEE++ + G + HAAGRED DVRMLG+GRP +
Sbjct: 202 SRVVSQGRLVPGASR----TIEEVLD-PVRARFGGSALVLHAAGREDSDVRMLGNGRPAV 256
Query: 386 FEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAAL 445
EI+ PS+ ++ L + V + LK M+ K Y A+
Sbjct: 257 VEIKE----PSKY-----RGDLSGLATEWVILSPLKPGTRNDVREMKAKSKTSIKLYRAV 307
Query: 446 VWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSS 505
+P+ ED + +L+ V ++Q+TP R+ R SP R + + + IE +
Sbjct: 308 ALSDKPISAEDLAKLKALEGAV----VVQRTPRRI-KRLSPRARRRRMVY-NIEAYQIAD 361
Query: 506 QYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ + + Q G Y+KEF++GD GRT PS+ LG E+++LDV DV+
Sbjct: 362 RVIEVFVRCQGGLYVKEFINGDGGRTQPSVAETLGASLEVVELDVLDVE 410
>gi|387596485|gb|EIJ94106.1| hypothetical protein NEPG_00773 [Nematocida parisii ERTm1]
Length = 440
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 44/232 (18%)
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSE--LLVKEIESKINSLENKLVR 416
G+ F + GRED DVRMLG+GRPF+ I+N R +P + LL I S+E V
Sbjct: 192 GNKVVFISGGREDYDVRMLGNGRPFICRIENPCRNLPRKVGLLCNVISESGASVEEYTVE 251
Query: 417 VK----------------NLKIVGSQGWTLMREGEAEKQKQYAALVWISRP--------- 451
K L + G+ +++ E E K Y+ V S P
Sbjct: 252 YKPIDIKYNMSKDVEILDTLLVDGAVAMKDLKKIEEEHSKVYSVKVLCSVPKKILINRLL 311
Query: 452 ---LQDEDFQTISSLKETVRCYQIL-------QKTPIRVLHRRSPLEREKIINWMKI--E 499
++E T S + R + ++ Q+TPIRVLHRR+ L R K I+ +I E
Sbjct: 312 STYWKEETDNTHSDMN---RAFSLMEPDLKLNQRTPIRVLHRRANLVRNKTIHSCRIVIE 368
Query: 500 KIAGSSQYFL-LHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
K L + + + +GTYIKEFV+GD+GRT+PS+ ++G +L+LDV
Sbjct: 369 KTQKDQNTMLQIEIKSSSGTYIKEFVNGDMGRTSPSLSEVVGEYCAVLELDV 420
>gi|387594668|gb|EIJ89692.1| hypothetical protein NEQG_00462 [Nematocida parisii ERTm3]
Length = 333
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 44/232 (18%)
Query: 360 GDSYKFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSE--LLVKEIESKINSLENKLVR 416
G+ F + GRED DVRMLG+GRPF+ I+N R +P + LL I S+E V
Sbjct: 85 GNKVVFISGGREDYDVRMLGNGRPFICRIENPCRNLPRKVGLLCNVISESGASVEEYTVE 144
Query: 417 VK----------------NLKIVGSQGWTLMREGEAEKQKQYAALVWISRP--------- 451
K L + G+ +++ E E K Y+ V S P
Sbjct: 145 YKPIDIKYNMSKDVEILDTLLVDGAVAMKDLKKIEEEHSKVYSVKVLCSVPKKILINRLL 204
Query: 452 ---LQDEDFQTISSLKETVRCYQIL-------QKTPIRVLHRRSPLEREKIINWMKI--E 499
++E T S + R + ++ Q+TPIRVLHRR+ L R K I+ +I E
Sbjct: 205 STYWKEETDNTHSDMN---RAFSLMEPDLKLNQRTPIRVLHRRANLVRNKTIHSCRIVIE 261
Query: 500 KIAGSSQYFL-LHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
K L + + + +GTYIKEFV+GD+GRT+PS+ ++G +L+LDV
Sbjct: 262 KTQKDQNTMLQIEIKSSSGTYIKEFVNGDMGRTSPSLSEVVGEYCAVLELDV 313
>gi|241574177|ref|XP_002403066.1| hypothetical protein IscW_ISCW009153 [Ixodes scapularis]
gi|215502141|gb|EEC11635.1| hypothetical protein IscW_ISCW009153 [Ixodes scapularis]
Length = 147
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 41/181 (22%)
Query: 377 MLGSGRPFLFEI-QNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
MLG GRPF+ EI + R + ++ ++ IE +IN K ++V +L+++ ++++GE
Sbjct: 1 MLGKGRPFILEIFEPKRAIFTKSEMESIEKEINE-ATKDIKVNDLQVISKSDTQVLKDGE 59
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
K+K Y AL +RPL ED T+ +K+ V + QKTPIRVLH
Sbjct: 60 ESKRKCYTALCCANRPLTAEDSATVLKIKDLV----LKQKTPIRVLH------------- 102
Query: 496 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
+Y+KEFVHGD GRT PS+G L +I++LDV ++ +
Sbjct: 103 ----------------------SYVKEFVHGDFGRTTPSLGDYLNAEVDIVELDVEEIDL 140
Query: 556 N 556
+
Sbjct: 141 D 141
>gi|390960456|ref|YP_006424290.1| hypothetical protein CL1_0284 [Thermococcus sp. CL1]
gi|390518764|gb|AFL94496.1| hypothetical protein CL1_0284 [Thermococcus sp. CL1]
Length = 386
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 21/242 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
P+Y GRY K R + QT E+ S+ II G F AGRED+
Sbjct: 161 NPVYVYGRYRKLVRGIPQTPLPDFED-----SVASIIC-RAFSRVSGGKCIFKGAGREDV 214
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQ--GWTLM 431
DVR LG+GRPF+ E++ ++ +L V + +IN+ + V V L+ V + G L
Sbjct: 215 DVRTLGNGRPFIVEMKRPKKRRFDLDV--VAREINA--SGKVEVLGLRFVSPKEAGEVLT 270
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
R +K+Y ALV + + E+ + ++ + +I Q+TP RV + R+ R K
Sbjct: 271 RN----HRKEYLALVLVEEGVTPEEAEEVAR---KLTGLEIHQRTPWRVRNARADKVRVK 323
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
++ + I ++F L + T G YIKE V GD GRT PS+ +LG A +LDV
Sbjct: 324 KVHEAEARWI--DDRHFELRLVTDGGLYIKELVSGDRGRTRPSVSELLGKPAWCERLDVL 381
Query: 552 DV 553
+V
Sbjct: 382 NV 383
>gi|119872113|ref|YP_930120.1| pseudouridylate synthase [Pyrobaculum islandicum DSM 4184]
gi|119673521|gb|ABL87777.1| THUMP domain protein [Pyrobaculum islandicum DSM 4184]
Length = 413
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 118/252 (46%), Gaps = 42/252 (16%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMG--EASIEEIIGGNILPMCRGDSYKFHAAGR 370
+ P+ G YLK SR +SQ + + G ++S+ E + I M G + H +GR
Sbjct: 192 KNPLLIEGVYLKLSRRISQAK------KFGNVKSSLLEKLQ-YIRDMYGGVEHIIHVSGR 244
Query: 371 EDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTL 430
ED D RMLG GRP + EI+ +K L + + I G+T
Sbjct: 245 EDSDARMLGPGRPLVVEIKQP-------------TKYKGLPH--LYSDGDVIFIPLGFTT 289
Query: 431 MREGEAEKQKQ------YAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRR 484
E K+K Y ALV+ RPL +E+ + ++ L ++Q TP R+
Sbjct: 290 RDEVRKLKEKAKTDIKLYRALVYSDRPLSEEELRKLAELSGKT----VVQYTPRRIKRLN 345
Query: 485 SPLEREKI---INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
+R ++ I W I SS F L++ Q G Y+KEF+HGD GRT PS+ IL
Sbjct: 346 PRKKRTRMVYEIVWRFI-----SSHVFELYVRCQGGLYVKEFIHGDGGRTTPSVAEILNT 400
Query: 542 RAEILQLDVTDV 553
E+L+LDV +
Sbjct: 401 YLEVLELDVLSI 412
>gi|409095949|ref|ZP_11215973.1| pseudouridylate synthase [Thermococcus zilligii AN1]
Length = 386
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 29/246 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
PIY GRY K R + QT ++ SI II + G+ F AGRED+
Sbjct: 161 NPIYLYGRYRKLVRGIPQTPLPEFKD-----SIASIICRVVARAFDGECI-FKGAGREDV 214
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVR LG+GRPF+ E++ + +L +I +IN+ + V V +L V +
Sbjct: 215 DVRTLGNGRPFVVEVKRPKRRKVDL--NKIAEEINA--SGKVEVLDLSFVSAN------- 263
Query: 434 GEAEK------QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
EAE+ +K+Y ALV++ + E+ ++ +R +I Q+TP RV R+
Sbjct: 264 -EAEEVLTKNHRKEYLALVFVKDGVTPEEAVEVAR---KLRNLEIHQRTPWRVRKVRTDK 319
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
R K + + I +F L++ T G YIKE + GD GRT PS+ +LG A +
Sbjct: 320 VRVKKVYEAQSRWI--DDTHFELYLVTDGGLYIKELISGDKGRTKPSVSDLLGKSAWCER 377
Query: 548 LDVTDV 553
LDV ++
Sbjct: 378 LDVLNI 383
>gi|374326741|ref|YP_005084941.1| hypothetical protein P186_1260 [Pyrobaculum sp. 1860]
gi|356642010|gb|AET32689.1| hypothetical protein P186_1260 [Pyrobaculum sp. 1860]
Length = 414
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 30/246 (12%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIID-----EERMGEASIEEIIGGNILPMCRGDSYKFHA 367
R P+ GG YLK SR VSQ + D E++ A ++++ GG + H
Sbjct: 193 RNPVLIGGVYLKLSRRVSQAKKFGDVKTTLTEKL--AYVKDVFGGG--------EHVVHV 242
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
+GRED D RMLG+GR + E++ + + L++ V +
Sbjct: 243 SGREDSDARMLGTGRQLVVEVKQP---------VKYRGSVPPLKDDDVIFIPSTFTTREE 293
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
++E K Y ALV R L E+ + L + Q TP R+ R SP
Sbjct: 294 VRRLKEKAKTDVKLYRALVLSERELSAEELNKLGELSGKT----VTQLTPRRI-KRLSPR 348
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
++ + + ++ S F L++ Q G Y+KEF+HGD GRT PS+ IL E+L+
Sbjct: 349 KKRVRMVYELAWRLV-SPHVFELYVRCQGGLYVKEFIHGDGGRTKPSVSEILNTYLEVLE 407
Query: 548 LDVTDV 553
LDV V
Sbjct: 408 LDVLAV 413
>gi|444722665|gb|ELW63348.1| Putative tRNA pseudouridine synthase Pus10 [Tupaia chinensis]
Length = 211
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 381 GRPFLFEIQNAREVP-SELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQ 439
GRPF E+ N V + +KE++ KIN NK ++V++L++V + M+EGE EK
Sbjct: 62 GRPFAIELVNPHRVHFTSQEIKELQQKINMSSNK-IQVRDLQLVTREAIGHMKEGEEEKT 120
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIE 499
K Y+AL+W ++ +Q ED + ++ +K+ +I QKTP+RVLHRR R ++I+ M+
Sbjct: 121 KTYSALIWTNKAIQKEDIEFLNGIKD----LKIDQKTPLRVLHRRPLAVRTRVIHSMETH 176
Query: 500 KIAGSSQYFLLHMCTQAGTYIKEF 523
+ +F L + TQAGTY F
Sbjct: 177 YV--DEHHFRLCLKTQAGTYPSAF 198
>gi|156102468|ref|XP_001616927.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805801|gb|EDL47200.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 788
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 397 ELLVKEIESKINSLEN--KLVRVKNLKIVGSQGWTL----MREGEAEKQKQYAALVWISR 450
E+L K++ N +N LV VK + S + L M+ GE E++K Y +++ S
Sbjct: 615 EILKKDVTQNANRDDNINNLVDVKFSNVAFSTNYALIKKIMKYGE-ERKKAYKCIIYHSS 673
Query: 451 PLQDEDFQTI-----SSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSS 505
P+ E + I S K + ++QKTPIRVLHRRS L+REK I + +
Sbjct: 674 PMTKEKIEKINQDVLSYDKNDMCVISVMQKTPIRVLHRRSLLKREKKI--FEFNLVFVHE 731
Query: 506 QYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG--CRAEILQLDVT 551
+ LL++ Q+G YIKEFV+GD GRT P++ G IL LDV+
Sbjct: 732 HFSLLYLLAQSGMYIKEFVNGDRGRTFPNLKHFFGQDTFVNILNLDVS 779
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 265 ENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLK 324
+N ++ T+ +P DE Q+ E T+ FP V C+C G Y K
Sbjct: 333 KNRELAPTDTLPTDEG-----QNRELDPTNTFPTLDVYISLNNLCIC--------GYYNK 379
Query: 325 YSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPF 384
Y++ +SQT+W I+ E S+EE I R + F A+GRED DVRM+ GRPF
Sbjct: 380 YNKEMSQTKWFINNESQSALSVEECIYRIFKKTFRSVNSVFMASGREDKDVRMMSIGRPF 439
Query: 385 LFEIQNAR 392
+F ++ +
Sbjct: 440 VFVLKETK 447
>gi|429329080|gb|AFZ80839.1| hypothetical protein BEWA_002460 [Babesia equi]
Length = 619
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 12/141 (8%)
Query: 418 KNLKIVGSQGWTLMR-EGEAE-KQKQYAALVWISRPLQDEDFQTISSLKETVRC-YQILQ 474
+NL+I + + R + +AE K K Y LV+ + PL I+ LK V+C I Q
Sbjct: 486 RNLRISFNSRFERQRVQNDAEGKLKSYNCLVFSADPLD------INVLKRGVKCPIDIKQ 539
Query: 475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
+ P+R+ HRRS R + I ++I+ I + FLL + TQAGTY+KEFV GDLGRT PS
Sbjct: 540 RNPVRISHRRSQDIRNRTIYSLEIDPI--HPRLFLLSISTQAGTYVKEFVTGDLGRTRPS 597
Query: 535 IGSILG-CRAEILQLDVTDVK 554
+ SILG +L LDV D++
Sbjct: 598 LKSILGSSELYVLHLDVLDIQ 618
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 50/89 (56%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R I F G Y K R +SQT WI+D + + SIEE IG + +C YKF A+GRED
Sbjct: 310 RDTITFTGVYNKNVRGLSQTLWILDNKVVTPISIEECIGAPLNHICGSREYKFMASGRED 369
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVK 401
DVR G+GR F E+ N E+L +
Sbjct: 370 SDVRTFGNGRIFCIEMYNCTRDIFEILYR 398
>gi|221060648|ref|XP_002260969.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193811043|emb|CAQ42941.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 788
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 414 LVRVKNLKIVGSQGWTL----MREGEAEKQKQYAALVWISRPLQDEDFQTISSL-----K 464
LV VK I S + L M+ GE E++K Y +++ S P+ E Q I+ K
Sbjct: 634 LVDVKFSNIAFSTNYALIKKIMKFGE-ERKKAYKCIIYHSSPMTKEKIQKINQDVLNYDK 692
Query: 465 ETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524
+ ++QKTPIRVLHRRS L+RE+ I + + + LL++ Q+G YIKEFV
Sbjct: 693 NDICIINVIQKTPIRVLHRRSLLKRERKI--FEFNLVFVHEHFSLLYLLAQSGMYIKEFV 750
Query: 525 HGDLGRTNPSIGSILG--CRAEILQLDVT 551
+GD GRT P++ G IL LDV+
Sbjct: 751 NGDRGRTFPNLKHFFGQDTFVNILNLDVS 779
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAA 368
C+C G Y KY++ +SQT+W I+ E S+EE I + + F A+
Sbjct: 366 CVC--------GYYNKYNKEMSQTKWFINNESQSALSVEECICHIFKKTFQSCNEVFMAS 417
Query: 369 GREDIDVRMLGSGRPFLFEIQNAR 392
GRED DVRM+ GRPFLF ++ +
Sbjct: 418 GREDKDVRMMNIGRPFLFVLKETK 441
>gi|389585938|dbj|GAB68668.1| hypothetical protein PCYB_135420 [Plasmodium cynomolgi strain B]
Length = 746
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 414 LVRVKNLKIVGSQGWTL----MREGEAEKQKQYAALVWISRPLQDEDFQTI-----SSLK 464
LV VK + S + L M+ GE E++K Y +++ S P+ E Q I S K
Sbjct: 592 LVDVKFSNVAFSTNYALIKKIMKYGE-ERKKAYKCIIYHSSPMTKEKIQKINQDVLSYDK 650
Query: 465 ETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524
+ ++QKTPIRVLHRRS L+RE+ I + + + LL++ Q+G YIKEFV
Sbjct: 651 NDMCVISVIQKTPIRVLHRRSLLKRERKI--FEFNLVFVHEHFSLLYLLAQSGMYIKEFV 708
Query: 525 HGDLGRTNPSIGSILG--CRAEILQLDVT 551
+GD GRT P++ G IL LDV+
Sbjct: 709 NGDRGRTFPNLKHFFGQDTFVNILNLDVS 737
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 297 PLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILP 356
PL ++ L LC G Y KY++ +SQT+W I+ E S+EE I
Sbjct: 310 PLPTIDVYISLNNLCI------CGYYNKYNKEMSQTKWFINNESQSALSVEECIYHIFKK 363
Query: 357 MCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAR 392
R + F A+GRED DVRM+ GRPF+F ++ +
Sbjct: 364 TFRSTNEVFMASGREDKDVRMMNIGRPFVFVLKETK 399
>gi|378756476|gb|EHY66500.1| hypothetical protein NERG_00140 [Nematocida sp. 1 ERTm2]
Length = 290
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 42/230 (18%)
Query: 365 FHAAGREDIDVRMLGSGRPFLFEIQN-AREVPSELLV---------KE-----IESKINS 409
F + GRED DV MLG+GRPF+ I+N +R +P ++ KE +E K ++
Sbjct: 47 FISGGREDYDVCMLGNGRPFICRIENPSRNLPRKVGALCTVMTESGKEAEEYTVEYKPHN 106
Query: 410 LENKLVR-VKNLKIVGSQGWTLMREGEAEKQ---KQYAALVWISRPLQDEDFQTISS--- 462
++ K+ R V+ L+ +G M++ +A ++ K Y V P Q +S+
Sbjct: 107 IKYKMSRDVEILETRLVEGAASMKDLKAIEEVHCKVYGVRVRCLAPQAMVISQLLSTYWK 166
Query: 463 ---------------LKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQ- 506
LK+T C ++ Q+TPIRVL RR+ + R+K+I+ ++ + +
Sbjct: 167 EDATIVKNVGRREFVLKDT--CLKLSQRTPIRVLQRRANMVRDKVIHKCRVSIESAQDKD 224
Query: 507 --YFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
+ + +GTYIKEF++GD+GRT PS+ ++G +L+LDV ++
Sbjct: 225 TTVISIELKASSGTYIKEFINGDMGRTTPSLSEVVGEYCAVLELDVLSIE 274
>gi|221505290|gb|EEE30944.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 1098
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 40/155 (25%)
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ---------------------- 471
G EK K+Y LV+ RP+ Q + ++ETVR Q
Sbjct: 937 GAEEKVKRYECLVFAERPVSP---QALREVQETVRSLQGRSAPLAGQQTEERGQDRGQEG 993
Query: 472 -------------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
I QKTP+RVLHRRS R++ I + I + Q F+ + TQAGT
Sbjct: 994 EQEREQERDGGLIIYQKTPLRVLHRRSLAVRQRRIYAIDIVPV--HPQVFICRLDTQAGT 1051
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
Y+KEFVHGDLGRT+PS+ S+L ++L LDV ++
Sbjct: 1052 YVKEFVHGDLGRTSPSLSSLLNAPCQLLLLDVCNL 1086
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
I GRY K SR++SQT W++D R E S+EE IG + + ++F +AGRED DV
Sbjct: 399 IVVVGRYRKQSRDLSQTLWVVDNRRKLEMSVEEAIGKPLQWLLDASGFRFISAGREDADV 458
Query: 376 RMLGSGRPFLFEIQNAR 392
RMLG+GRPF E+ R
Sbjct: 459 RMLGAGRPFAIELLGCR 475
>gi|347522720|ref|YP_004780290.1| THUMP domain-containing protein [Pyrolobus fumarii 1A]
gi|343459602|gb|AEM38038.1| THUMP domain-containing protein [Pyrolobus fumarii 1A]
Length = 478
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 32/335 (9%)
Query: 244 RKVDAKNCLDTVKDKSAITGVENSVVST-----TEVIPVDEKSSNGLQDNEPSETHEFPL 298
R+V+A++ + + + GVE+S+V+ E I + K G + + + +F
Sbjct: 126 REVEAESFVVGARLAEEVRGVEDSIVANYGLVHAESIAAELKREVGKRLRDLGFSVDFSN 185
Query: 299 KKVN-----EPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIID-EERMGEASIEEIIGG 352
V R+E PI G Y K +R VSQ+ WI + S+++
Sbjct: 186 PDVTLLVEYPSGRIEATI--NPILILGFYKKTARRVSQSSWITSFGVKRYPFSVQDAYT- 242
Query: 353 NILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN 412
+L + +G HAAGRED+DVRMLGSGRP + E++ P VK IE S+ +
Sbjct: 243 PLLELYKGSEIVIHAAGREDVDVRMLGSGRPIVVEVKE----PRRRRVK-IEDAERSVND 297
Query: 413 KLVRVKNLKIVGSQGWTLMR------EGEAEKQKQYAALVWISRPLQDEDFQTISSLKET 466
+ V + ++ + MR EGE K Y ALV++ + ED I L E
Sbjct: 298 EWVGLFKTVLIERVTRSFMRSVVKGVEGEERHAKIYRALVYVPDGVSHED---IEKLVEF 354
Query: 467 VRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHG 526
+ + Q+TP RV HRR+ + RE+ + + KI S F+ + + G YIKE V G
Sbjct: 355 FKGRLVRQRTPRRVRHRRADIIRERKVYEVSAYKI--SDNLFIAFIRAEGGLYIKELVSG 412
Query: 527 DLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE 561
+ T P LG +A ++LDV V+ + E
Sbjct: 413 E--DTWPGFPDALGKQAHCVELDVVKVETKLRVKE 445
>gi|221484018|gb|EEE22322.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 1099
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 40/155 (25%)
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ---------------------- 471
G EK K+Y LV+ RP+ Q + ++ETVR Q
Sbjct: 938 GAEEKVKRYECLVFAERPVSP---QALREVQETVRSLQGRSAPLAGQQTEERGQDRGQEG 994
Query: 472 -------------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
I QKTP+RVLHRRS R++ I + I + Q F+ + TQAGT
Sbjct: 995 EQEREQERDGGLIIYQKTPLRVLHRRSLAVRQRRIYAIDIVPV--HPQVFICRLDTQAGT 1052
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
Y+KEFVHGDLGRT+PS+ S+L ++L LDV ++
Sbjct: 1053 YVKEFVHGDLGRTSPSLSSLLNAPCQLLLLDVCNL 1087
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
I GRY K SR++SQT W++D R E S+EE IG + + ++F +AGRED DV
Sbjct: 399 IVVVGRYRKQSRDLSQTLWVVDNRRKLEMSVEEAIGKPLQWLLDASGFRFISAGREDADV 458
Query: 376 RMLGSGRPFLFEIQNAR 392
RMLG+GRPF E+ R
Sbjct: 459 RMLGAGRPFAIELLGCR 475
>gi|237836519|ref|XP_002367557.1| hypothetical protein TGME49_002740 [Toxoplasma gondii ME49]
gi|211965221|gb|EEB00417.1| hypothetical protein TGME49_002740 [Toxoplasma gondii ME49]
Length = 1096
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 40/155 (25%)
Query: 434 GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQ---------------------- 471
G EK K+Y LV+ RP+ Q + ++ETVR Q
Sbjct: 935 GAEEKVKRYECLVFAERPVSP---QALREVQETVRSLQGRSAPLAGQQTEERGQDRGQEG 991
Query: 472 -------------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
I QKTP+RVLHRRS R++ I + I + Q F+ + TQAGT
Sbjct: 992 EQEREQERDGGLIIYQKTPLRVLHRRSLAVRQRRIYAIDIVPV--HPQVFICRLDTQAGT 1049
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
Y+KEFVHGDLGRT+PS+ S+L ++L LDV ++
Sbjct: 1050 YVKEFVHGDLGRTSPSLSSLLNAPCQLLLLDVCNL 1084
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
I GRY K SR++SQT W++D R E S+EE IG + + ++F +AGRED DV
Sbjct: 399 IVVVGRYRKQSRDLSQTLWVVDNRRKLEMSVEEAIGKPLQWLLDASGFRFISAGREDADV 458
Query: 376 RMLGSGRPFLFEIQNAR 392
RMLG+GRPF E+ R
Sbjct: 459 RMLGAGRPFAIELLGCR 475
>gi|124807995|ref|XP_001348196.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23497086|gb|AAN36635.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 879
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Query: 430 LMREGEAEKQKQYAALVWISRPLQDEDFQTISSL------KETVRCYQILQKTPIRVLHR 483
LM+ GE E++K+Y +++ S + + Q I+ + +I+QKTPIRVLHR
Sbjct: 748 LMKYGE-ERKKEYKCIIYHSSKMNKDTIQKINDQISNHEPQTLTYVLKIIQKTPIRVLHR 806
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG--C 541
RS + RE+ I +I+ I + LL++ ++G YIKEFV+GD GRT P++ G
Sbjct: 807 RSLINRERKI--FQIKLIYLHKHFSLLYLLAESGLYIKEFVNGDKGRTIPNLKQFFGDDT 864
Query: 542 RAEILQLDV 550
IL LDV
Sbjct: 865 YVNILNLDV 873
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 308 ECLCFRTPIYFG-----GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS 362
EC + I F G Y KY++ +SQT+W+I+ SIEE I + +
Sbjct: 409 ECKTYHMYISFHNLCICGYYNKYNKEISQTKWLINNISNSVLSIEECISNIFNNIFSFST 468
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAR 392
F +GRED D RM+ GRPF++ +++ +
Sbjct: 469 ATFIGSGREDKDARMMNIGRPFVYVLKDTK 498
>gi|357624618|gb|EHJ75327.1| hypothetical protein KGM_02495 [Danaus plexippus]
Length = 385
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 8/86 (9%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPM-------CRGDS 362
+C PIY GRY+K SRN+ Q+ W++D +R+ +S++EII G I C G
Sbjct: 300 ICTHAPIYVCGRYVKLSRNLPQSPWVLDGKRVLPSSVQEIIFGPIAKFYNFSDVDCEG-R 358
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEI 388
KF AAGRED+DVR LG GRPF E+
Sbjct: 359 LKFIAAGREDVDVRCLGDGRPFAIEV 384
>gi|401406021|ref|XP_003882460.1| hypothetical protein NCLIV_022170 [Neospora caninum Liverpool]
gi|325116875|emb|CBZ52428.1| hypothetical protein NCLIV_022170 [Neospora caninum Liverpool]
Length = 1034
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
GRY K SR++SQ+ W++D R E S+EE IG + + Y+F +AGRED DVRMLG
Sbjct: 408 GRYRKQSRDISQSLWLVDNRRKLEMSVEEAIGKPLQWLLDASGYRFLSAGREDADVRMLG 467
Query: 380 SGRPFLFEIQNAREVP 395
GRPF E+ R P
Sbjct: 468 KGRPFAIELLECRRPP 483
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I QKTP+RVLHRRS R + I I+ + Q F+ + TQAGTY+KEFVHGDLGRT
Sbjct: 943 IYQKTPLRVLHRRSLTVRPRRI--YAIDFVPVHPQIFICRLDTQAGTYVKEFVHGDLGRT 1000
Query: 532 NPSIGSILGCRAEILQLDVTDV 553
PS+ S+L CR +L LDV+++
Sbjct: 1001 IPSLSSLLRCRCHLLLLDVSNL 1022
>gi|350582369|ref|XP_003125162.3| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Sus
scrofa]
Length = 500
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 140/352 (39%), Gaps = 84/352 (23%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHV------------------------LG 87
LLS C RCIFR G+ V L K LL + L
Sbjct: 15 LLSTGTCARCIFRFCGVDVHAPYKLPYKELLNELQKFLETENDELASEVPNPPPKKIRLQ 74
Query: 88 EQAD-------LHQN----ISSVEP----------NICRSCLGILQFTYCGDKERVVENE 126
E D L QN +S +E N+C CLGILQ +C E
Sbjct: 75 ELEDGIDGMDNLGQNGEGKLSVIEDGSMASKNSNLNVCNVCLGILQ-DFC---------E 124
Query: 127 SACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSIS 186
A F + + V+ G + + VS PP + E+ L VK++ ++ R
Sbjct: 125 KA--FIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRD-- 180
Query: 187 ECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
+ K+A K+ +T+PL E L G S F + + ++ E +E C
Sbjct: 181 DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVSVVFAHPET----------VEDCHFL 229
Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
+ C K+K SV + V+ K+ N +++ + + P
Sbjct: 230 RAICPECFKPAKNK-------QSVFTRMAVM----KALNKIKEEDFRKQFPCPPNSPKAV 278
Query: 305 CR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
C LE C ++ GRY KYSRN+ QT WIID ER E+S+EE+I ++L
Sbjct: 279 CTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLL 330
>gi|82915512|ref|XP_729104.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485971|gb|EAA20669.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 807
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 414 LVRVKNLKIVGSQGWTL----MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
LV VK I S + L M+ GE +++K Y +++ S + E I + + V
Sbjct: 653 LVDVKFSNIAFSTNYELIKKVMKFGE-DRKKAYKCIIYHSCVMTKE---KIIEINKQVLN 708
Query: 470 YQ--------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
Y+ I+QKTPIRVLHRR L R++ I K+ + + LL++ ++GTYIK
Sbjct: 709 YENCNDCVLNIIQKTPIRVLHRRGLLNRKRKIYEFKL--VFIHKHFSLLYLLAESGTYIK 766
Query: 522 EFVHGDLGRTNPSIGSILGCRA--EILQLDVT 551
EFV+ D GRT PS+ A IL LDV+
Sbjct: 767 EFVNSDRGRTFPSVKYFFEDNAFVNILNLDVS 798
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
G Y KY++N SQT+W+I+ + + S+EE I + ++ F AAGRED DVRM+
Sbjct: 385 GYYNKYNKNCSQTKWLINNSSVSQISVEECIYEIFAKIFPSSTFTFMAAGREDKDVRMMN 444
Query: 380 SGRPFLFEIQNAR 392
GRPFLF ++ +
Sbjct: 445 IGRPFLFTLKETK 457
>gi|68072473|ref|XP_678150.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498524|emb|CAH99009.1| conserved hypothetical protein [Plasmodium berghei]
Length = 804
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 414 LVRVKNLKIVGSQGWTL----MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRC 469
LV VK I S + L M+ G+ +++K Y +++ S + E I+ + + V
Sbjct: 650 LVDVKFSNIAFSTNYELIKKVMKFGK-DRKKAYKCIIYHSCVMTKE---KITEINKQVLN 705
Query: 470 YQ--------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 521
Y+ I+QKTPIRVLHRR + R++ I K+ + + LL++ ++GTYIK
Sbjct: 706 YENCNDCVLNIIQKTPIRVLHRRGLINRKRKIYEFKL--VFIHKHFSLLYLLAESGTYIK 763
Query: 522 EFVHGDLGRTNPSIGSILGCRA--EILQLDVT 551
EFV+ D GRT PS+ A IL LDV+
Sbjct: 764 EFVNSDRGRTFPSVKYFFEDNAFVNILNLDVS 795
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
G Y KY++N SQT+W+I+ + + S+EE I + ++ F AAGRED DVRM+
Sbjct: 385 GYYNKYNKNCSQTKWLINNSSVSQISVEECIYEIFAKIFPSSTFTFMAAGREDKDVRMMN 444
Query: 380 SGRPFLFEIQNAR 392
GRPFLF ++ +
Sbjct: 445 IGRPFLFTLKETK 457
>gi|440794215|gb|ELR15382.1| hypothetical protein ACA1_275560 [Acanthamoeba castellanii str.
Neff]
Length = 338
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 504 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
S + L + TQAGTY+KEFVHGDLGRT P++G +LGC +ILQLDV ++++
Sbjct: 235 SPHFITLDLTTQAGTYVKEFVHGDLGRTTPNLGLLLGCETDILQLDVLAIELD 287
>gi|70936623|ref|XP_739231.1| helicase [Plasmodium chabaudi chabaudi]
gi|56516071|emb|CAH89110.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 161
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Query: 414 LVRVKNLKIVGSQGWTLMRE---GEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCY 470
LV VK I S + L+++ GE +++K Y +++ S + E I+ + + V Y
Sbjct: 8 LVDVKFSNIAFSTNYELIKKVMYGE-DRKKAYKCIIYHSCVMTKE---KITEVNKQVLNY 63
Query: 471 Q--------ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKE 522
+ I QKTPIRVLHRR + R++ I K+ I + LL++ ++GTYIKE
Sbjct: 64 EKCDDCVLNIAQKTPIRVLHRRGLINRKRKIYEFKLVFI--HKHFSLLYLLAESGTYIKE 121
Query: 523 FVHGDLGRTNPSIGSIL--GCRAEILQLDVT 551
FV+ D GRT PS+ IL LDV+
Sbjct: 122 FVNSDRGRTFPSVKHFFEDNAFVNILNLDVS 152
>gi|399218213|emb|CCF75100.1| unnamed protein product [Babesia microti strain RI]
Length = 583
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 13/135 (9%)
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTIS-SLKETVRCYQILQKTPIRVLHRRSPLER 489
++E KQK Y+ LV + L+ ++ ++ + + + Q P+R+ HRRS R
Sbjct: 448 LQESGESKQKVYSCLVLSTSDLRQSHLDIAEVAINQSPKGFIVSQGNPLRMTHRRSQAYR 507
Query: 490 EKIINWMKIEKIAGSSQYFLLHMCTQA---------GTYIKEFVHGDLGRTNPSIGSIL- 539
+K + ++ + + ++ F++ + T+A GTY+KEF++GDLGR+ PSI +L
Sbjct: 508 QKRVYYISTKLL--HARLFIMDIITEADLISDGYDPGTYVKEFINGDLGRSMPSISHLLG 565
Query: 540 GCRAEILQLDVTDVK 554
G +L+LDV D+K
Sbjct: 566 GIDLYVLKLDVIDIK 580
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 313 RTPIYFGGRYLKYSR--NVSQTRWIIDEERMG---EASIEEIIGGNILPMCRGDSYKFHA 367
R + G+Y+ +SQT W D E+SIE+ + + + +K A
Sbjct: 239 RDLVTLTGKYISMGAVFAMSQTPWKADGFAFTNPVESSIEQSLARVFNTLFQSCEFKLIA 298
Query: 368 AGREDIDVRMLGSGRPFLFEIQNARE--VPSELLVKEIESKINSLENKLV 415
+GRED DVRM+G GR F EI N + + + +K+I + N EN +
Sbjct: 299 SGREDCDVRMMGKGRRFALEIYNCKSDLIGAFFTIKKISTS-NGAENHCI 347
>gi|440794212|gb|ELR15379.1| hypothetical protein ACA1_275530 [Acanthamoeba castellanii str.
Neff]
Length = 477
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 137/347 (39%), Gaps = 53/347 (15%)
Query: 59 LRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGD 118
LRCI +P S + +D + E C +CLG LQ
Sbjct: 99 LRCIMESLWATLPETERRS----------DGSDWRARSQATEAAACVACLGTLQ------ 142
Query: 119 KERVVENESACDF-AVAIAELVKKEG-HQIDSFSLEVSMPPTILENENKLSLYVKRKYRS 176
N + F +A L G ++ +SL ++MP + + + L ++ ++
Sbjct: 143 ------NVQSDKFMGPLLAALTGGTGKYEFSDYSLTITMPASTVTRQYALHYHLLATHKF 196
Query: 177 EAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-STFHIRLTYSRVEASIRIQNFV 235
F+D+S K+A+K+ L + L + + S FH+ + Y E +F+
Sbjct: 197 TEEFEDKST--IVDIKEAMKWILGHELRRRIGLNFSRESLFHVGIKYKHAETETE-HHFL 253
Query: 236 EKIE--GCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQD---NEP 290
IE G + ++ + + + + G E + ++ DE S + N P
Sbjct: 254 YDIEQSGMRPQRKKKQQQHRGRQRAAPLEGHEEA----SKRDESDEASLTAVTKTLRNLP 309
Query: 291 SETH----EFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASI 346
T P +NE + E F IY GRY K+SR +SQ+ W+ D R+ E+S+
Sbjct: 310 MTTFIKYGAVPPVPINEGAKCELTFFHDSIYLAGRYAKFSRELSQSPWVADGARVSESSV 369
Query: 347 EEIIGG----------NILPMCRGDSYKFHAAGREDIDVRMLGSGRP 383
+E+I G I + G + HA G VR G G P
Sbjct: 370 QELITGPLNKHFQAEDEIFFVGTGGHRRAHAGG--GTAVRAGGRGSP 414
>gi|156082940|ref|XP_001608954.1| hypothetical protein [Babesia bovis T2Bo]
gi|154796204|gb|EDO05386.1| conserved hypothetical protein [Babesia bovis]
Length = 569
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E + R I F G Y K +R + QT W +E S+EE + ++ +C G SYKF A
Sbjct: 285 EFVIIRDVITFVGYYNKLARGLCQTSWTPGKETKSNLSVEECLCLPLMSICDGSSYKFMA 344
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAR 392
+GRED DVR +G+GR F E+ N +
Sbjct: 345 SGREDCDVRTIGNGRMFCVELYNCK 369
>gi|71032829|ref|XP_766056.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353013|gb|EAN33773.1| hypothetical protein, conserved [Theileria parva]
Length = 618
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 472 ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRT 531
I QK P+R+ HRRS RE+++ +K+ I + L+++ T AG YIKEFV+GDLGRT
Sbjct: 538 IKQKNPLRISHRRSQDTRERLVLDLKLNLI--HPKLLLMYIKTTAGLYIKEFVNGDLGRT 595
Query: 532 NPSIGSILGCRAEILQLDVTDV 553
P++ +L + + LDV D+
Sbjct: 596 LPNLSKMLNTKLYPVSLDVLDI 617
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R I F G Y K+ RN+SQT W +D R S+E+ IG + + YK AGRED
Sbjct: 267 RNKISFIGYYNKFQRNISQTDWYLD--RSDIMSVEKCIGLPLKKILNAQEYKLIGAGRED 324
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELL 399
++VR LG+GR E++N P LL
Sbjct: 325 VNVRNLGNGRKAALELKNLTLDPFLLL 351
>gi|422294199|gb|EKU21499.1| hypothetical protein NGA_2120110, partial [Nannochloropsis gaditana
CCMP526]
gi|422295468|gb|EKU22767.1| hypothetical protein NGA_2120120, partial [Nannochloropsis gaditana
CCMP526]
Length = 90
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 507 YFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSIL-GCRAEILQLDVTDVKM 555
YF LH+ T AGTYIKEFVHGD+GRT PS+G +L G A++L LDVT + M
Sbjct: 16 YFTLHLRTSAGTYIKEFVHGDMGRTRPSVGDLLGGLEADLLALDVTGIVM 65
>gi|403220873|dbj|BAM39006.1| uncharacterized protein TOT_010000471 [Theileria orientalis strain
Shintoku]
Length = 739
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
R + F G Y K+SR +SQT WI+ + + S+EE+IG +L + RG K GRED
Sbjct: 310 RDVVSFMGYYNKFSRCISQTEWILGDRDI--LSVEELIGEPLLKVTRGKKCKLVGCGRED 367
Query: 373 IDVRMLGSGRPFLFEIQNAR 392
+DVR LG+GR L EI R
Sbjct: 368 VDVRNLGNGRKILMEIYKTR 387
>gi|159465605|ref|XP_001691013.1| hypothetical protein CHLREDRAFT_169686 [Chlamydomonas reinhardtii]
gi|158279699|gb|EDP05459.1| predicted protein [Chlamydomonas reinhardtii]
Length = 202
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 322 YLKYSRNVSQTRW--IIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLG 379
Y K R++ Q+ W + +R+G S++E + G +LP+ + K GRED DVRMLG
Sbjct: 84 YCKLRRHMPQSPWFDMGSGQRIGGVSVQEALEGWLLPLWGCCTAKMVTGGREDADVRMLG 143
Query: 380 SGRPFLFEIQNA-REVPSELLVKEIESKINS 409
+GRPF+ E+Q R P ++E+E ++ +
Sbjct: 144 AGRPFILELQGPLRASPPAATLREVERRMRA 174
>gi|396081955|gb|AFN83569.1| putative pseudouridylate synthase [Encephalitozoon romaleae
SJ-2008]
Length = 135
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 452 LQDEDFQTISSLKETVRCYQIL-------------QKTPIRVLHRRSPLEREKIINWMKI 498
+Q D S+K+ + C +L Q+TP+RVLHRR+ L REK ++
Sbjct: 1 MQRHDIPGRESVKQDIFCLSMLRKELDIQKGCVIDQRTPLRVLHRRANLAREKKTCILEC 60
Query: 499 E-KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
E K Y + + AGTYIKEFV+GD GRT PS+GS ++L+LDV V
Sbjct: 61 ERKDVDGWIYCRIKLEASAGTYIKEFVNGDFGRTTPSLGSKEN-YYDLLELDVLRV 115
>gi|12802208|gb|AAK07770.1|AF275908_4 unknown [Babesia bovis]
Length = 518
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA 367
E + R I F G Y K +R + QT W +E +EE + ++ +C G SYKF A
Sbjct: 237 EFVIIRDVITFVGYYNKLARGLCQTSWTPGKE---TKVLEECLCLPLMSICDGSSYKFMA 293
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAR 392
+GRED DVR +G+GR F E+ N +
Sbjct: 294 SGREDCDVRTIGNGRMFCVELYNCK 318
>gi|374723872|gb|EHR75952.1| putative pseudouridylate synthase [uncultured marine group II
euryarchaeote]
Length = 573
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 463 LKETVR---CYQILQKTPIRVLHRRSPLEREKIINWMK---IEKIAGSSQYFLLHMCTQA 516
+KET+ ++ Q+TP RV HRR+ L R++ + IE + + ++
Sbjct: 474 IKETIEKLAGVKLFQRTPERVAHRRADLIRKRTVFETSKPIIETMEDGVTEVEFTLRCES 533
Query: 517 GTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
GTY+KE VHGD GRT PS+ S++ + ++L LDV D+ +
Sbjct: 534 GTYVKETVHGDGGRTQPSLSSLIKAKCDVLWLDVGDIHAD 573
>gi|159041524|ref|YP_001540776.1| hypothetical protein Cmaq_0954 [Caldivirga maquilingensis IC-167]
gi|332319807|sp|A8MDD0.1|PUS10_CALMQ RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|157920359|gb|ABW01786.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
Length = 401
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
PIY RY K R + Q +G++S+ + ++ R + H AG E +
Sbjct: 195 PIYIEARYRKLIRGIPQ---------VGDSSVASV-AREVVSELRPLNVVLHFAGIEGPE 244
Query: 375 VRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
VR+LG GRP + E R +P ++ + V++ NLK G ++
Sbjct: 245 VRVLGLGRPMIIEATRPLRRSLPGGIITRH-----------GVQLLNLKAAGKVQVREIK 293
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
E ++ + LV + + DE +++ + Q + K R K+
Sbjct: 294 SKAGELRRVFRILVKLHGSVTDEQLRSLEDYFSNRQIRQSMGKG-----------RRVKL 342
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I +K+ + GS +++ TQ G ++ F+ G+ T PS+ LG + +++D+ +
Sbjct: 343 IYGLKVVPVHGSILELIVN--TQGGFSVRRFITGE--GTEPSVSGTLGIKVTPIEIDILN 398
Query: 553 V 553
+
Sbjct: 399 I 399
>gi|408405290|ref|YP_006863273.1| pseudouridylate synthase-like protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365886|gb|AFU59616.1| putative pseudouridylate synthase-like protein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 371
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 51/259 (19%)
Query: 315 PIYFGGRYLKYSRNV--SQTRWIIDEER-----------MGEASIEEIIGGNILPMCRGD 361
P+ GRY+K SR V Q R E R G S+E +I ++ M G
Sbjct: 144 PLMLSGRYVKKSRGVPQKQDRCPDCEGRGCSSCNNTGGLSGNGSVEGVIAKGLVEMTGGQ 203
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
+ KF G ED +LGSGRPF I N ++ + K R+
Sbjct: 204 APKFSWIGSEDQSSLVLGSGRPFYARIYNPKK----------------RKLKRSRISGSG 247
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWI----SRPLQDEDFQTISSLKETVRCYQILQKTP 477
+V + + E E + Q ++ I + L +D + + SL Y+
Sbjct: 248 VVATLS-VIEEEDEPDLQPRFKVKTRIHAKCEKELTKDDMKKLGSLAGAEVSYE------ 300
Query: 478 IRVLHRRSPLEREKIIN-WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIG 536
RS + +KI + W + +I + F L M G IK+FV G+ P+I
Sbjct: 301 -----NRSKMATKKIYSAWAR--RI--NDNQFSLTMVADGGMMIKQFVGGEE-YMKPNIS 350
Query: 537 SILGCRAEILQLDVTDVKM 555
ILG + E + D+ DV +
Sbjct: 351 EILGKKCECVGFDILDVSL 369
>gi|325968733|ref|YP_004244925.1| THUMP domain-containing protein [Vulcanisaeta moutnovskia 768-28]
gi|323707936|gb|ADY01423.1| THUMP domain-containing protein [Vulcanisaeta moutnovskia 768-28]
Length = 412
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 96/242 (39%), Gaps = 31/242 (12%)
Query: 315 PIYFGGRYLKYSRNVS---QTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
PIY RY K R V+ Q RW ID SI ++ G H G +
Sbjct: 197 PIYISARYRKIHRLVNGRGQVRWPID-------SIIQVFGAQ--------DVVIHVGGED 241
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
R+LG+GRP + +I PS + ++ + L N V + +L V S M
Sbjct: 242 PFGARVLGNGRPTILQIIKPSRRPS---IDDVYPLLKGL-NYDVILSDLSRVKSSAIVRM 297
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+ + Y L + D + I SL + R Q++Q R ++R
Sbjct: 298 KARVRDYVITYRVLAITDNSVTDGN---IKSLHDYFRNRQVVQVF-----RRGRRVKRRV 349
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
+ + K+ G L C Q YI+ F+HG G PSI LG +++D+
Sbjct: 350 SMVYELDGKVIGDRLVEFLIRC-QGNLYIRGFIHGGFGDVEPSIAGTLGFGVRPVEIDIL 408
Query: 552 DV 553
++
Sbjct: 409 NI 410
>gi|388254755|gb|AFK24871.1| THUMP domain-containing protein [uncultured archaeon]
Length = 361
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 54/260 (20%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDS 362
P+ GRY+K SR + Q + + G+ SIE II ++ M G +
Sbjct: 138 PLALFGRYVKRSRGLPQKQDKCPDCEGKGCGSCSYSGLSGDGSIEGIIAKGLMKMTGGQA 197
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
KF G ED +LG+GRPF I + + + KL+R +I
Sbjct: 198 PKFSWIGSEDRSSLVLGTGRPFYAHIFSPK------------------KRKLLRS---RI 236
Query: 423 VGSQGWTLMR--EGEAEKQKQYAALVWI----SRPLQDEDFQTISSLKETVRCYQILQKT 476
VG+ ++ E E E Q ++ I + L ED + ++ L ++ +T
Sbjct: 237 VGNGITVTLKVIEDEPELQPRFKVKTKIHTKCEKGLSKEDIKKLNLLAGAEVSFKNRART 296
Query: 477 PIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIG 536
+ +H R + I S F+L M G IK+FV G+ P+I
Sbjct: 297 ATKKIHS----ARARRI----------SDSQFVLTMVADGGLMIKQFVGGE-EYMEPNIS 341
Query: 537 SILGCRAEILQLDVTDVKMN 556
ILG + E + D+ V++
Sbjct: 342 EILGAKCECVTFDILGVELQ 361
>gi|424811933|ref|ZP_18237173.1| hypothetical protein J07AB56_04660 [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756155|gb|EGQ39738.1| hypothetical protein J07AB56_04660 [Candidatus Nanosalinarum sp.
J07AB56]
Length = 81
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 474 QKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNP 533
Q+TP RV HRR+ R + + + ++ Q +L + +AGTYIKE V D GRT P
Sbjct: 3 QRTPERVEHRRADKTRRREV--LDVDWGVDDGQ-LVLEITAEAGTYIKELVSSDEGRTQP 59
Query: 534 SIGSILGCRAEILQLDVT 551
S+ +L AE+ LDVT
Sbjct: 60 SVAGLLSTEAEVDLLDVT 77
>gi|156345431|ref|XP_001621363.1| hypothetical protein NEMVEDRAFT_v1g222064 [Nematostella vectensis]
gi|156207203|gb|EDO29263.1| predicted protein [Nematostella vectensis]
Length = 238
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 34/175 (19%)
Query: 52 LLSKEVCLRCIFRLFGMQVP---------ICSSLSVKSLLCHVLGEQADLHQNISSVEPN 102
L +C+RCI R + P I + + L ++L EQ H N +
Sbjct: 26 LYELNLCVRCILRFLKEKTPSAYEGNNSYIAKYIEEEYGLEYILKEQDTEHNNYDT---- 81
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVA--IAELVKKEGHQIDSFSLEVSMPPTIL 160
IC+ CLGILQ + CD I + V+ G++ +SF+ +S+P + +
Sbjct: 82 ICKGCLGILQ--------------NGCDTPTVNKIVDTVQSSGYEFESFTFAISIPLSTM 127
Query: 161 ENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKF----ALTNPLETLLDVKC 211
++ L L++K K+ S+ + R+ + S K+ +K+ A+ N L +C
Sbjct: 128 AYQHSLLLHLKEKF-SKFYDAVRTADDLPSIKEVIKWVCGPAVGNALGVYFKHEC 181
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGD 361
+C + GGRY KYSR + QT W+ID ER+ E+S++E I I P + D
Sbjct: 187 VCSHGSLLIGGRYNKYSRFLPQTPWLIDGERLKESSVQEKIINIIGPPIQAD 238
>gi|161528040|ref|YP_001581866.1| pseudouridylate synthase-like protein [Nitrosopumilus maritimus
SCM1]
gi|332319839|sp|A9A215.1|PUS10_NITMS RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|160339341|gb|ABX12428.1| pseudouridylate synthase-like protein [Nitrosopumilus maritimus
SCM1]
Length = 381
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 345 SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIE 404
S+E I + G + KF G ED +LG+GRPF +IQN + +++
Sbjct: 199 SVEGEISQFLFKKLGGTTAKFTWIGGEDKSSLILGTGRPFFVKIQNPHK-------RKLR 251
Query: 405 SKINSLENKLVRVKNLKIVG-SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
+K +LE+ ++V N KIV S L E + ++++ D + + L
Sbjct: 252 AKSANLEH--IKVSNFKIVADSPKKPLKFNSSVEARISTSSII---------DAKLLRKL 300
Query: 464 KETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEF 523
K L K PI V + +S EK I +K +K +S F L + G +K F
Sbjct: 301 KN-------LTKKPIAV-YEKSGKRSEKRILSIKYKKSDETS--FTLFFKFEGGLPVKRF 350
Query: 524 VHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
V GD +P I IL + L+ D DV++
Sbjct: 351 VTGD--DVSPGISQILDMSCKCLEFDFHDVEV 380
>gi|307594675|ref|YP_003900992.1| THUMP domain-containing protein [Vulcanisaeta distributa DSM 14429]
gi|332319824|sp|E1QUT8.1|PUS10_VULDI RecName: Full=tRNA pseudouridine synthase Pus10; AltName: Full=tRNA
pseudouridine 54/55 synthase; Short=Psi54/55 synthase
gi|307549876|gb|ADN49941.1| THUMP domain protein [Vulcanisaeta distributa DSM 14429]
Length = 412
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 31/242 (12%)
Query: 315 PIYFGGRYLKYSRNVS---QTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
PIY RY K R ++ Q +W ID ++ H G +
Sbjct: 197 PIYISARYRKVHRLINEEGQVKWPIDR---------------VIQAYNAQDVVIHTGGED 241
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
+ VR+LG+GRP + ++ + P V ++ + + +V + NL V + M
Sbjct: 242 PMGVRVLGNGRPVILQVVKPSKRPD---VNDVYALLKDSGYDIV-LDNLSRVRASAVVKM 297
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+ + Y L + +E+ I SL + R Q++Q V R + R
Sbjct: 298 KARVRDYVITYRVLAITDNSVTNEN---IKSLHDYFRNRQVVQ-----VFRRGRRIRRRI 349
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
+ + ++ L C Q YI+ FVHG LG PSI LG +++D+
Sbjct: 350 SMVYELDGRVIRDRLVEFLIRC-QGNLYIRGFVHGGLGDVEPSIAGTLGFSVRPVEIDIL 408
Query: 552 DV 553
++
Sbjct: 409 NI 410
>gi|329764771|ref|ZP_08256365.1| pseudouridylate synthase-like protein [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138735|gb|EGG42977.1| pseudouridylate synthase-like protein [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 383
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 40/253 (15%)
Query: 315 PIYFGGRYLKYSRNVSQTR-----------WIIDEERMGEA-SIEEIIGGNILPMCRGDS 362
P+ F GRY K R + Q + + D + E S+E I + G +
Sbjct: 158 PLLFHGRYTKSHRGIPQKQKSCVNCLGKGCRVCDFHGISEFDSVEGKISEFLFKKFGGTT 217
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
KF G ED D +LGSGRPF ++QN + + K I + + N + + I
Sbjct: 218 AKFTWVGGEDKDSLVLGSGRPFFVKLQNPFKRKISIPKKIISDSV--IINNFKMISDPPI 275
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + ++ +R E + L + L+D + P+ V++
Sbjct: 276 VPIRFYSSIR---LEISTENDILAVNMKKLKD------------------ITGKPV-VVY 313
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
+S EKI++ +K +K S +F L + + G IK FV GD P I +L +
Sbjct: 314 EKSGKRSEKIVSNLKYKKT--SKNHFTLFIKAEGGLPIKRFVDGD--DVTPGISPLLNDK 369
Query: 543 AEILQLDVTDVKM 555
D +V +
Sbjct: 370 CTCESFDFLEVDL 382
>gi|396081954|gb|AFN83568.1| putative pseudouridylate synthase [Encephalitozoon romaleae
SJ-2008]
Length = 208
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDI 373
+P+Y Y+K RN++Q+ I+D S+ + G + D F GRED
Sbjct: 73 SPMYIYEEYIKMDRNMTQSPLIVDGHLKCSRSVSD-FGVQVKEFFLSDDVVFTPVGREDF 131
Query: 374 DVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
DVRM+ GRP L ++N R S E+ +L + L +++L +V + + +
Sbjct: 132 DVRMV-EGRPLLLIVKNPRRNLS------FEALKLALYDGL-EIRDLCVVKKECKGTIFQ 183
Query: 434 GEAEKQKQYAALVWISRPL 452
GE+ K Y+A + R L
Sbjct: 184 GESLSNKTYSAFLCSERSL 202
>gi|407462069|ref|YP_006773386.1| pseudouridylate synthase-like protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045691|gb|AFS80444.1| pseudouridylate synthase-like protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 381
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 43/261 (16%)
Query: 308 ECLCFRTPIYFGGRYLKYSRNVSQTR-----------WIIDEERMGEA-SIEEIIGGNIL 355
+C + GRY+K R SQ + + D + E S+E I +
Sbjct: 150 DCTLRSKSLTLSGRYVKSIRGFSQKQKSCSNCSGKGCRVCDFHGILEFDSVEGEISQFLF 209
Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLV 415
G + KF G ED +LGSGRPF +IQN + +I+ K V
Sbjct: 210 KKLGGTTAKFTWIGGEDKSSLVLGSGRPFFVKIQNPYKR---------NLQISYANLKHV 260
Query: 416 RVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL-KETVRCYQILQ 474
+V N KIV T ++ + K + S + + Q I +L K TV
Sbjct: 261 QVSNFKIVRESPKTPLKFNSLVEAK-----ISTSSSIDSKLLQKIKTLAKNTV------- 308
Query: 475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
V++ +S EK I +K +K +S F L + G +K FV GD +P
Sbjct: 309 -----VVYEKSGKRSEKKIFSIKYKKHDETS--FTLFFKFEGGLPVKRFVTGD--DVSPG 359
Query: 535 IGSILGCRAEILQLDVTDVKM 555
I LG + L+ D D+++
Sbjct: 360 ITQTLGVPCKCLEFDFHDIEV 380
>gi|167393934|ref|XP_001740774.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165894977|gb|EDR22793.1| hypothetical protein EDI_170780 [Entamoeba dispar SAW760]
Length = 243
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 43/203 (21%)
Query: 135 IAELVKKEGHQID-SFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKD 193
I E +K+ GH + +F + S P I E L Y+ R + S+ + R KD
Sbjct: 78 IHEALKESGHVYEGTFYINTSFPQAIFVREIALCRYITRTFPSKNYSPFR-------LKD 130
Query: 194 ALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQN--FVEKIEGCKRRKVDAKNC 251
L+F L N ++ D KC + + ++LT +R +E G KR++
Sbjct: 131 TLRFILMNKIK---DWKCELES-PLKLTIEFTHQQLREDGDKLIEISVGKKRKR------ 180
Query: 252 LDTVKDKSAITGVEN---SVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLE 308
++T+ A+ +EN V + IP P++ +P +
Sbjct: 181 METLTSTIAMNVIENIPLKVFEESFTIP--------------------PIRNEEDPGKYR 220
Query: 309 CLCFRTPIYFGGRYLKYSRNVSQ 331
+ R IY GGRY KYSR +SQ
Sbjct: 221 FIFERDYIYIGGRYRKYSRQLSQ 243
>gi|386875346|ref|ZP_10117521.1| hypothetical protein TIGR01213 [Candidatus Nitrosopumilus salaria
BD31]
gi|386806848|gb|EIJ66292.1| hypothetical protein TIGR01213 [Candidatus Nitrosopumilus salaria
BD31]
Length = 238
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 41/252 (16%)
Query: 316 IYFGGRYLKYSRNVSQTR-----------WIIDEERMGEA-SIEEIIGGNILPMCRGDSY 363
+ F GRY+K R ++Q + I + + E S+E +I + G
Sbjct: 15 VTFSGRYVKNQRGIAQKQKPCDNCSGKGCRICNFHGISEFDSVEGLISKFLFEKLGGTIA 74
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
KF G ED +LGSGRPF +IQN P + ++ K++SLE + NLKI
Sbjct: 75 KFTWIGGEDKSSLVLGSGRPFFVKIQN----PLKRNLRLNRIKLDSLE-----INNLKIA 125
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHR 483
+K ++ +L+ + + T+ + Q V++
Sbjct: 126 ---------HESPKKPVKFISLIEVKISTE----FTVDAKNLKKLKDLKKQSI---VVYD 169
Query: 484 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 543
+S EK + + +K S+ F++ + + G IK FV GD +P + IL +
Sbjct: 170 KSGKRSEKKVFSVTYKK--NSNNSFIMKLKAEGGLPIKRFVTGD--DVSPGLSQILDTQC 225
Query: 544 EILQLDVTDVKM 555
+ D D+++
Sbjct: 226 MCQEFDFLDIEV 237
>gi|407464404|ref|YP_006775286.1| pseudouridylate synthase-like protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407047592|gb|AFS82344.1| pseudouridylate synthase-like protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 380
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEA----------- 344
F L +E C+L I GRY K R + Q + E +G+
Sbjct: 142 FTLNLKDELCQLRS----KSITISGRYAKSRRGLPQKQKSC-ENCLGKGCRVCNFHGISE 196
Query: 345 --SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE 402
S+E II I G + KF G ED +LGSGRPF +IQN +
Sbjct: 197 FESVEGIISKFIFKKFGGTTAKFTWLGGEDKSSLVLGSGRPFFVKIQNPYKR-------- 248
Query: 403 IESKINSLENKLVRVKNLKIVG 424
+SK++ + +++ NLK+VG
Sbjct: 249 -KSKLSDVTLDPIKLYNLKLVG 269
>gi|424811934|ref|ZP_18237174.1| putative pseudouridylate synthase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756156|gb|EGQ39739.1| putative pseudouridylate synthase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 321
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 320 GRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRGDSYKFH 366
G+Y K+SR + QT W + R G+ S++E I + KFH
Sbjct: 174 GQYNKHSREIPQTVWHCRKCR-GDGCEQCDWTGKNYPTSVQEEIQPPFMRETEAIEAKFH 232
Query: 367 AAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQ 426
GRED+D R LG R F+ E+ + +L ++E++ ++N ++ V V L+
Sbjct: 233 GGGREDVDARCLGK-REFVLEL--VEPLHRDLDLEELQEEVN--QSDKVEVFGLRPADKD 287
Query: 427 GWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISS 462
++E A+ K Y A V P +D + + + S
Sbjct: 288 EIEEIKEKHAD--KTYRAYVETGEPPEDLELEKLRS 321
>gi|84999026|ref|XP_954234.1| hypothetical protein [Theileria annulata]
gi|65305232|emb|CAI73557.1| hypothetical protein TA20375 [Theileria annulata]
Length = 289
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 345 SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELL 399
S+E+ IG + + + YK AGRED++VR LG+GR E++N P LL
Sbjct: 2 SVEKCIGLPLKKILDAEEYKLIGAGREDVNVRNLGNGRKMALELKNTSIDPFLLL 56
>gi|70608187|ref|NP_001020449.1| pseudouridylate synthase 10 [Rattus norvegicus]
gi|62471544|gb|AAH93611.1| Similar to RIKEN cDNA 4933435A13 [Rattus norvegicus]
Length = 262
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 68/253 (26%)
Query: 52 LLSKEVCLRCIFRLFGMQVPICSSLSVKSLLC-----------HVLGEQAD-------LH 93
LL C RCIFR G+ +P K LL ++ E D LH
Sbjct: 15 LLRSGTCPRCIFRFCGVDLPAPYKRPYKELLDDLQTFLESENRELILEGPDPPLKKIRLH 74
Query: 94 Q--------------------NISSVEPN---ICRSCLGILQFTYCGDKERVVENESACD 130
+ N+++ +P+ +C CLGILQ +C D
Sbjct: 75 EDGVDTLSANGEEGVSVTEDENMAATKPSNWRVCNVCLGILQ-GFCEK-----------D 122
Query: 131 FAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSS 190
F + + V+ G + S L VS PP + E+ L VK++ ++ R ++
Sbjct: 123 FITEVCQKVEASGFEFTSVVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGR--NDVVQ 180
Query: 191 TKDALKFALTNPL--ETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDA 248
K+A K+ +T+PL E L G S F + + ++ E ++ C
Sbjct: 181 LKEAYKW-ITHPLFSEELGVPTDGKSLFEVSVVFAHPET----------LQDCHFLGEVC 229
Query: 249 KNCLDTVKDKSAI 261
+C K+K ++
Sbjct: 230 PDCFKPAKNKQSV 242
>gi|84489672|ref|YP_447904.1| H/ACA RNA-protein complex component Cbf5p [Methanosphaera
stadtmanae DSM 3091]
gi|84372991|gb|ABC57261.1| TruB [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKE-TVRCYQILQKTPIRVLHRRSPLEREKIINWMKI 498
K+Y L+ + +P+ +ED IS L E T + YQI P++ +R R + I +K+
Sbjct: 93 KEYVCLMRLHKPVDEEDI--ISILDEFTGKIYQI---PPVKSAVKREL--RVRTIYEVKL 145
Query: 499 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
+I +Q L + Q+GTYI+++ H IG LGC A + +L
Sbjct: 146 LEIR-DNQDVLFRITCQSGTYIRKYCH--------DIGEALGCGAHMAEL 186
>gi|340344420|ref|ZP_08667552.1| Pseudouridylate synthase-like protein [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519561|gb|EGP93284.1| Pseudouridylate synthase-like protein [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 386
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
G ED +LGSGRPF ++QN + L K I K V + NLKI+
Sbjct: 223 VGGEDQSSLVLGSGRPFFVKLQNPFKRNISLPKKIISDK--------VAIHNLKIISDPP 274
Query: 428 WTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPL 487
T ++ + +L+ + + E + E ++ + + + V++ +S
Sbjct: 275 KTPIK---------FNSLIELKISTEHE------IIPENLKKLKNMLSNSV-VVYEKSGK 318
Query: 488 EREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQ 547
EK ++ +K +KI S F L + + G +K FV GD P I ++ +
Sbjct: 319 RSEKTVSILKYKKI--SKNLFNLIIKAEGGLPVKRFVDGD--DVTPGITQMMSDGCTCVA 374
Query: 548 LDVTDVKMN 556
D ++ +N
Sbjct: 375 FDFLEINLN 383
>gi|405378809|ref|ZP_11032721.1| tRNA pseudouridine 55 synthase [Rhizobium sp. CF142]
gi|397324681|gb|EJJ29034.1| tRNA pseudouridine 55 synthase [Rhizobium sp. CF142]
Length = 310
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK---FH 366
L P+ FG + VS+ +W+ ++ G A + + +LP+ GD+ K +
Sbjct: 16 LILDKPVDFGS-----TEAVSKIKWLFKAQKCGHAGTLDPLASGMLPIALGDATKTVPYV 70
Query: 367 AAGREDIDVRM-LGSGRP---FLFEI-QNAREVPSELLVKEIESK-INSLENKLVRVKNL 420
GR+ + + G R E+ QN+ + PSE +++I K I ++ + +
Sbjct: 71 MDGRKIYEFTVSWGEERATDDLEGEVTQNSDKRPSEQQIRDILPKYIGTISQVPPQFSAI 130
Query: 421 KIVGSQGWTLMREGEA 436
KI G + + L R+GEA
Sbjct: 131 KIAGERAYDLARDGEA 146
>gi|124028184|ref|YP_001013504.1| H/ACA RNA-protein complex component Cbf5p [Hyperthermus butylicus
DSM 5456]
gi|123978878|gb|ABM81159.1| predicted pseudouridine synthase [Hyperthermus butylicus DSM 5456]
Length = 345
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCY--QILQKTPIRVLHRRSPLEREKIINWMK 497
K+Y ++ + RP+ +E+ L+ + + +I Q+ P+R +RS L +KI +
Sbjct: 115 KEYMCVMQLHRPVPEEE------LRRAINMFVGEIYQRPPLRSSVKRS-LRLKKI---YE 164
Query: 498 IEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
IE + + +Y L+ + ++AGTY+++ H IG ILG A + +L T
Sbjct: 165 IELLEYNGRYALMRVFSEAGTYMRKLCH--------DIGLILGVGAHMRELRRT 210
>gi|340625029|ref|YP_004743482.1| hypothetical protein GYY_09470 [Methanococcus maripaludis X1]
gi|339905297|gb|AEK20739.1| hypothetical protein GYY_09470 [Methanococcus maripaludis X1]
Length = 884
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
Query: 354 ILPMCRGDSYK--------FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSEL----LVK 401
ILP+ Y+ F G D+D+ ++ +N +EV SE +V
Sbjct: 81 ILPLSPNTHYEKIVEIRLEFDEVGEHDVDISLID---------ENGKEVDSEQTTVNVVS 131
Query: 402 EIESKINSLENKLV--RVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
I+ K + ++ V KNL++V S +T+ E Q Y WIS D D T
Sbjct: 132 PIDVKNVTCQDSYVFDSNKNLEVVNSNWFTVTLESNYRAQTDYEVKTWISVVSTDYDGDT 191
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQ 515
++ Y K ++V++ E+E N I KI + F + + T+
Sbjct: 192 NEDIENEDIYYN--GKDDLKVVYVSYRSEKEVSFN---IPKITADNDEFKIQVHTE 242
>gi|393909525|gb|EJD75486.1| arginine N-methyltransferase 7 [Loa loa]
Length = 1108
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 92 LHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVK-------KEGH 144
L +N+++VE ++ + G +R+VE C AI + K+G
Sbjct: 298 LVKNLAAVEFGNLPDAFYLIMSIFSG--QRMVETSHFCASCGAIISTKRCCKVDKEKQGE 355
Query: 145 QIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLE 204
+ + + TI++N+ +S+ R +SE +R S + KD +F +N
Sbjct: 356 ERRCSLRDSAASKTIVQNDGSISIDAIRDGQSENKDVERVASALADIKD--RFIFSNYQL 413
Query: 205 TLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGV 264
L VK IST I + R+ +S R+Q+ I+ C RRK AK L+TV ITG
Sbjct: 414 DALIVKI-IST--ISRAFPRILSS-RLQSLHIWIQNCLRRKHKAKMFLETV---DPITGQ 466
Query: 265 ENSVVSTTEVIPVDEKSSNG----LQDNEPSETHEFPLKKV 301
V+ + E + +G + D E ++ +E LK V
Sbjct: 467 RTWKVAEEDYDVAQEIARSGFGDMIHDFERNQRYELGLKSV 507
>gi|212373354|dbj|BAE96935.2| Cbf5 [Hyperthermus butylicus DSM 5456]
Length = 228
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCY--QILQKTPIRVLHRRSPLEREKIINWMK 497
K+Y ++ + RP+ +E+ L+ + + +I Q+ P+R +RS L +KI +
Sbjct: 46 KEYMCVMQLHRPVPEEE------LRRAINMFVGEIYQRPPLRSSVKRS-LRLKKI---YE 95
Query: 498 IEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
IE + + +Y L+ + ++AGTY+++ H IG ILG A + +L T
Sbjct: 96 IELLEYNGRYALMRVFSEAGTYMRKLCH--------DIGLILGVGAHMRELRRT 141
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,255,211,447
Number of Sequences: 23463169
Number of extensions: 334760566
Number of successful extensions: 829247
Number of sequences better than 100.0: 480
Number of HSP's better than 100.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 827147
Number of HSP's gapped (non-prelim): 701
length of query: 561
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 413
effective length of database: 8,886,646,355
effective search space: 3670184944615
effective search space used: 3670184944615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)