BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008562
(561 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10
PE=1 SV=1
Length = 529
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 483
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
TYIKEFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>sp|Q9D3U0|PUS10_MOUSE Putative tRNA pseudouridine synthase Pus10 OS=Mus musculus GN=Pus10
PE=1 SV=1
Length = 527
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 47/458 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 211 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 260
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 261 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 370 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 428
Query: 459 TISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGT 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGT
Sbjct: 429 FLDDLKD----LKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGT 482
Query: 519 YIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
YIKEFVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 483 YIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520
>sp|Q6ING2|PUS10_XENLA Putative tRNA pseudouridine synthase Pus10 OS=Xenopus laevis
GN=pus10 PE=2 SV=1
Length = 515
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 238/457 (52%), Gaps = 46/457 (10%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
IC CLGILQ +C E E V I V +++ F L +S+P +
Sbjct: 95 ICPLCLGILQ-QFC-------EPEFIEKVFVKINSAV----YELKDFVLSISLPAQLSVR 142
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLT 221
E+ L K++ D++ + K+A K+ + L L ++ S F + +
Sbjct: 143 EHSAWLQAKQEMGKHGHSLDKT--DIVQLKEAYKWIIHPLLSDQLGIQADSKSLFEVAVV 200
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
++ E C ++C K+K SV + V+ EK
Sbjct: 201 FTHPETD----------GDCHFLATVCRDCFKPTKNK-------QSVFTRMAVVKALEK- 242
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRL-ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
+++ + FP C + + C +P++ GRY KYSRN+ QT WIID ER
Sbjct: 243 ---IKEEDFRVQFPFPPSSPETTCEVVDIQCNHSPVFVAGRYNKYSRNLPQTPWIIDGER 299
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
E+S+EE+I +++ R S+ F ++GRED+DVR LG GRPF E+ N +V +
Sbjct: 300 KIESSVEELITDHLVAAFRSSSFNFSSSGREDVDVRTLGKGRPFAIELLNPHKVQFTGQE 359
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+K ++ KIN+ + ++V++L+IV + M+EGE EK K Y AL+WI + +++ED Q
Sbjct: 360 IKALQQKINTSDK--IKVRDLQIVSREAVAHMKEGEEEKTKCYCALIWIEKMVRNEDLQL 417
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ L+E I QKTP+RVLHRR R + I+ M+ E + +F L++ TQAGTY
Sbjct: 418 LDGLEELT----IAQKTPLRVLHRRPLASRSRTIHTMRTEYV--DEHHFRLYLKTQAGTY 471
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKEFVHGD GRT P++GSI+ A+IL+LDV V ++
Sbjct: 472 IKEFVHGDFGRTKPNVGSIMETNADILELDVESVDVD 508
>sp|Q9VPK7|PUS10_DROME Putative tRNA pseudouridine synthase Pus10 OS=Drosophila
melanogaster GN=Pus10 PE=2 SV=2
Length = 500
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 20/277 (7%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE- 402
IEEII ++ P + F ++GRED+DVR LG GRPF+ EI NA+ L K+
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAKR---SCLTKDE 337
Query: 403 ---IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+E +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 338 AFAMERAVDA--SGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQ 395
Query: 460 ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 519
+ + + I QKTPIRVLHRR R + I + + G+ + ++ + TQAGTY
Sbjct: 396 L----QISASFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGTY 451
Query: 520 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
IKE VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 452 IKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>sp|A1RX33|PUS10_THEPD tRNA pseudouridine synthase Pus10 OS=Thermofilum pendens (strain
Hrk 5) GN=pus10 PE=3 SV=1
Length = 444
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 8/241 (3%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMG-EASIEEIIGGNILPMCRGDSYKFHAAGRED 372
P++ GRY KY+R + Q W +ER+ SIEE+I L + + KFHAAGRED
Sbjct: 206 APVFVYGRYRKYARGLPQNPWPQPDERIKFNTSIEELIVKPALELFEAEKAKFHAAGRED 265
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
IDVR LG+GRPF+ EI+ R+ +L V + KINS L+ V +L + ++
Sbjct: 266 IDVRTLGTGRPFVLEIKKPRKRNIDLKV--LAEKINSGAGGLIEVLDLAYTDRKTIKKLK 323
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ +K Y A V +P+ DE IS + I Q+TP RVLHRR R+KI
Sbjct: 324 SLASIAKKAYVARVKFEKPVDDEKLAEISKVFSNA---VINQRTPTRVLHRRVDKLRKKI 380
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ ++ KI+ F L TQ G Y+KEF+HGD GRT PSI LG ++LDV
Sbjct: 381 VYRLEARKISQDEVEFYLE--TQGGFYVKEFIHGDNGRTTPSIAEFLGNNVLSIELDVVS 438
Query: 553 V 553
+
Sbjct: 439 I 439
>sp|Q2NE45|PUS10_METST tRNA pseudouridine synthase Pus10 OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=pus10 PE=3 SV=1
Length = 407
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 22/253 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE---------ERMGEA---SIEEIIGGNILPMCRGDS 362
PI+ G+Y K R + QT+W + G+ ++E++I ILPM G++
Sbjct: 163 PIFIEGKYRKLVRGIPQTKWPCTHCKGKGCEACDYTGQQYKDTVEDLISREILPMTNGNT 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
KFH +GREDIDVRMLG GRPF+ E+++ ++ +K + +NS + + + +LK
Sbjct: 223 TKFHGSGREDIDVRMLGEGRPFVIEVKHP--FKRKIDLKFLRVLVNSHSDGKIEINDLKY 280
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V + ++ E K Y+A+ + +D I LK I Q+TPIRV H
Sbjct: 281 VTKERKASIKNSSVESYKIYSAIAEFENGVTSKDIYNIEKLK------TIDQRTPIRVEH 334
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ L R + I +++E+I S + L+ C Q G YIKE + GD RT PS+ SI +
Sbjct: 335 RRADLIRTREIKNIEVERI-NSKKLHLIIKC-QGGLYIKELISGDNNRTKPSVSSITNNQ 392
Query: 543 AEILQLDVTDVKM 555
AE QLDV V +
Sbjct: 393 AECTQLDVLKVHI 405
>sp|Q6L227|PUS10_PICTO tRNA pseudouridine synthase Pus10 OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=pus10 PE=3 SV=1
Length = 377
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 18/239 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y G Y+K SR++SQTRWI + GE SIE IIG + M ++Y H +GRED+D
Sbjct: 153 PVYIYGVYIKKSRDISQTRWI---HKTGE-SIESIIGNELRSMTGCENYYLHGSGREDVD 208
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
V MLG+GR F+ E + +L E++ ++N+ + ++ + NL S T+ R
Sbjct: 209 VMMLGNGREFVIEAAMPKRRYIDLY--ELQLRVNA--SGILFIYNLSY--SSKATVRRIK 262
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
+K Y A V + L + + S + I Q+TP+RV++ RS L R K IN
Sbjct: 263 SELHEKLYIAEV--TGDLNKDIKKACSKFNNLI----IEQRTPLRVINHRSDLVRRKKIN 316
Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
++ I I LL +C +AGTYIKE V+GD GRT PS+ S+ G + ++ LDV +
Sbjct: 317 YINIISIMNGRA--LLKICAEAGTYIKELVNGDNGRTVPSLSSVYGSQLQVSSLDVVKI 373
>sp|Q8TUV7|PUS10_METKA tRNA pseudouridine synthase Pus10 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pus10 PE=3
SV=1
Length = 436
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 133/251 (52%), Gaps = 21/251 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDS 362
PIY GRYLK R + QT+W R + S+EE+IG + +S
Sbjct: 185 PIYVRGRYLKLRRGIPQTKWPCPRCRGAGCPNCDFTGKLYTESVEELIGMVLKDAFLAES 244
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
+KFHAAGREDIDVRMLG+GRPF+ E+ + +L KEIE +IN V+V L+
Sbjct: 245 HKFHAAGREDIDVRMLGNGRPFVMELLYPKRRNVDL--KEIEGEINRKVGDDVQVVGLEY 302
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPL-QDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ +++ +K+Y A V +P+ +D+ + + L+ +V I Q+TP RVL
Sbjct: 303 GDPEDVGKVKDLSERSRKRYRAWVKFGKPVPEDKLREVLKGLERSV----IEQRTPRRVL 358
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ R K ++ K+ + G ++ G Y+KE + GD GRT PS+ ++
Sbjct: 359 HRRADKVRRKRVHEAKLIEYDGDRA--VIEFLCDPGLYVKELISGDAGRTRPSLAELVEV 416
Query: 542 RAEILQLDVTD 552
AE +LDV +
Sbjct: 417 EAECERLDVIE 427
>sp|D9PYH9|PUS10_METTM tRNA pseudouridine synthase Pus10 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=pus10 PE=3 SV=1
Length = 402
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 31/256 (12%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + QT+W R M S+EE+I +L G
Sbjct: 158 NPIFIEGRYRKLVRGIPQTKWPCRSCRGRGCSRCDYTGKMYPTSVEELISEPVLEATGGS 217
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQN-AREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH +GRED+DVRMLG+GRPF+ EI+ A P ++ +E +IN +V V +L
Sbjct: 218 DSKFHGSGREDVDVRMLGTGRPFVLEIKEPAIRTPD---LRALEDEINRRARGMVEVADL 274
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ ++E +K K Y A+V + + DED + L I Q+TP+RV
Sbjct: 275 RFSSRNRKVELKESSRKKYKVYRAIVELEGAVSDEDLVKLEKLD------LIRQRTPLRV 328
Query: 481 LHRRSPLEREKI---INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537
HRR+ RE+ I+W +++ + L + + G YIKE + GD GRT PS+ S
Sbjct: 329 SHRRADRIRERRVLEISWKRLD------DHLELIIKAEGGLYIKELISGDSGRTEPSVSS 382
Query: 538 ILGCRAEILQLDVTDV 553
ILG A LDV +V
Sbjct: 383 ILGVPARCASLDVLEV 398
>sp|Q9HIN9|PUS10_THEAC tRNA pseudouridine synthase Pus10 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=pus10 PE=3 SV=1
Length = 389
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 19/241 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
IY G+Y K+ R++ QTRWI R ++E +IG G +Y H +GRED+DV
Sbjct: 160 IYIYGKYRKFRRDMPQTRWI---HRPNGDTVESVIGSVFTRYAGGTNYYLHGSGREDVDV 216
Query: 376 RMLGSGRPFLFEIQNAREVPSEL--LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
RMLG+GR F+ E++N R EL +VKEI + K V + ++K + E
Sbjct: 217 RMLGNGREFVLEVENPRYREFELDPVVKEINTS-----GKGVEIFDVKFSSHDA---VSE 268
Query: 434 GEAEKQKQ-YAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
+ EK ++ Y ALV RP+ DE + + T + I Q+TP+RV RRS L R +
Sbjct: 269 VKLEKHRKVYDALVVSDRPI-DESRLLEACINLTGK--NIYQRTPLRVAQRRSDLVRTRR 325
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I+ + + ++ + L+ +AGTYIKE V+GD GRT PS+ + G + +LDV
Sbjct: 326 IDQVDLVGVSANEAEILI--SAEAGTYIKELVNGDGGRTRPSLSEMYGSPLNVKELDVIK 383
Query: 553 V 553
+
Sbjct: 384 I 384
>sp|Q60346|PUS10_METJA tRNA pseudouridine synthase Pus10 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pus10 PE=1 SV=1
Length = 454
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRG 360
P++ GRY K R + QTRW + R G+ S+EEII L +G
Sbjct: 205 NPLFIKGRYRKLVRGIPQTRWPCRKCR-GKGCELCNYTGKKYPISVEEIIAKPFLEATKG 263
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDVRMLG GRPF+ EI+ + ++ + +I +IN ++ V V NL
Sbjct: 264 VDAKFHGAGREDIDVRMLGDGRPFVLEIKEPK--IRKIDLNKIAEEIN--KDGRVEVLNL 319
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480
+ + + + +K Y ALV S + DE+ + + E Y QKTP RV
Sbjct: 320 EFGVRKDKVIFK--NTPHRKTYRALVECSDKITDEELKLLEKELENRTIY---QKTPKRV 374
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
LHRR+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 375 LHRRADLERIRKVYKVKTSKV--DDNHFEMIIYCDGGLYIKELISGDDGRTNPSVSSILN 432
Query: 541 CRAEILQLDVTDVKMNCFL 559
+LDV + N L
Sbjct: 433 KNCICKELDVLKIHDNNLL 451
>sp|A0B7V3|PUS10_METTP tRNA pseudouridine synthase Pus10 OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=pus10 PE=3 SV=1
Length = 452
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 22/251 (8%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII------------DEERMGEASIEEIIGGNILPMCRGDS 362
P+Y GRY K R QTRW + RM + S++E+I G I+ +
Sbjct: 200 PLYIYGRYRKLQRGFPQTRWPCRVCGGRGCERCGNTGRMYQESVDELIRGPIVEAADAED 259
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID RMLGSGRPF+ E+ R +L + + +IN + V V +L
Sbjct: 260 TVFHGAGREDIDARMLGSGRPFVVEVVRPRR--RDLDLNALRDEINRRCSGKVEVSDLIF 317
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
V +++ E K Y AL+ S P+++E + S+L + + Q+TP RV H
Sbjct: 318 VDKSMVEMVKNERFE--KTYEALIEFSVPVEEEKLK--SALSRLIGFVE--QRTPTRVSH 371
Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
RR+ R + ++ ++E+ +G + + +G Y+KE + GD GRT PS+ +L
Sbjct: 372 RRADKVRRRAVHSAELEEFSGRTARITVR--CDSGLYVKELISGDAGRTRPSLAELLESD 429
Query: 543 AEILQLDVTDV 553
A +++LDV DV
Sbjct: 430 ARVVELDVIDV 440
>sp|O29113|PUS10_ARCFU tRNA pseudouridine synthase Pus10 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pus10 PE=3 SV=1
Length = 357
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 136/253 (53%), Gaps = 28/253 (11%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDS 362
P++ GRYLK RN+SQTRW+ + +S+EE+I + + +
Sbjct: 118 PVFIYGRYLKRVRNISQTRWLCGYCNGEGCEVCNFTGKKYVSSVEELIAMPAVRLFKARD 177
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
K H AGRED+D RMLG+GRPF+ E+ R+ +L KE+E INS K V V++L+
Sbjct: 178 AKLHGAGREDVDARMLGTGRPFVLEVIEPRKRFVDL--KELEEAINS--QKWVAVRDLEY 233
Query: 423 VGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDF-QTISSLKETVRCYQILQKTPIRV 480
++ +RE + E+ +K Y A V ++ E + + SLK +R Q+TP+RV
Sbjct: 234 TDAEK---VREVKTERHRKTYRAKVVFEEKVERERLIEALESLKGEIR-----QRTPMRV 285
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
HRR+ R + + ++ I + + ++ +AG YIKE V GD GRT PS+ +G
Sbjct: 286 SHRRADRVRVRRLYDARL--IHHTGRVAVVEFEAEAGLYIKELVSGDNGRTRPSLAEKVG 343
Query: 541 CRAEILQLDVTDV 553
A + +LDV V
Sbjct: 344 VNARVDRLDVIAV 356
>sp|B1L7A7|PUS10_KORCO tRNA pseudouridine synthase Pus10 OS=Korarchaeum cryptofilum
(strain OPF8) GN=pus10 PE=3 SV=1
Length = 373
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 27/298 (9%)
Query: 269 VSTTEVIPVDEKSSNGLQ-DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSR 327
V+ T ++ V S GL+ EP F ++ + +LE P++ GRY K R
Sbjct: 87 VTLTRLLDVAISSLTGLKVSQEPDAILIFDFERGD--VKLEL----APVFIFGRYRKLQR 140
Query: 328 NVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+SQ+R E ++ + S+E I+G + + Y H AGRED+D
Sbjct: 141 GISQSRRKCPECGGRGCEACGWKGKIPQGSVEGIVGEVMREFFSAEDYVLHGAGREDVDA 200
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLG GRPF+ E+ + + ++L +E+ES+IN L+ VKNL+ + +++E
Sbjct: 201 RMLGEGRPFVMELLSPKRRSADL--REVESEINRRAAGLIEVKNLEFSRREKIRILKERS 258
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
+K Y ALV + +++ + + + L+ V I Q+TP RVL RR+ + R K +
Sbjct: 259 PNVKKLYRALVEVEGGVEEGELELLKGLEGAV----IRQRTPKRVLWRRADITRLKRVYE 314
Query: 496 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553
+ +I + F L + G Y+KE + GD GRT+PS+ ILG ++ +LDV +V
Sbjct: 315 VNFRRI--DDKKFELFVLCDGGLYVKELISGDDGRTSPSVTEILGKKSFCSELDVLEV 370
>sp|D7DQH5|PUS10_METV3 tRNA pseudouridine synthase Pus10 OS=Methanococcus voltae (strain
ATCC BAA-1334 / A3) GN=pus10 PE=3 SV=1
Length = 519
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 120/241 (49%), Gaps = 23/241 (9%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + Q+ W R S+EEII ++ + +G
Sbjct: 264 NPIFIKGRYRKTKRGIPQSHWDCRSCRGKGCEKCNFTGKQYPTSVEEIIAEPVMNIAKGS 323
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
HAAGREDIDV+MLG GRPF+ E++ + +LL +I +IN +E V V +L+
Sbjct: 324 GEALHAAGREDIDVKMLGKGRPFVIEVKEPKVRKMDLL--KIMDEINKIEG--VEVSDLE 379
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWI-SRPLQDEDFQT--ISSLKETVRCYQILQKTPI 478
G + + E K Y ALV I L++ DF+ I L E + +I Q+TP
Sbjct: 380 -YGVKNDVRFFKNEPH-TKTYCALVSIVDEELENHDFENDKIVELSEKLENLRIDQRTPH 437
Query: 479 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538
RV HRR+ L R + I E I S F L + G YIKE + GD GRT PSI I
Sbjct: 438 RVSHRRADLVRVRNIYKAWCEPIDEKS--FKLTVYCDGGLYIKELISGDEGRTKPSISEI 495
Query: 539 L 539
L
Sbjct: 496 L 496
>sp|Q8U1R6|PUS10_PYRFU tRNA pseudouridine synthase Pus10 OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pus10 PE=1
SV=1
Length = 388
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 130/253 (51%), Gaps = 43/253 (16%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA------ 367
PIY GRY K R + QT +E SI II CR FH
Sbjct: 158 NPIYVAGRYRKLIRGIPQTPAPGFKE-----SIATII-------CRAFKKHFHGKCIFKG 205
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRPF+ EI+ R+ L K+IE +IN ++ V V NL+ + +
Sbjct: 206 AGREDVDVRMLGNGRPFVVEIKRPRKRKVNL--KDIEEEIN--QSGKVEVLNLRFITPE- 260
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQ-TISSLKETVRCYQILQKTPIRV 480
EAE+ +K Y A+V++ + E+ + + SLK +I Q+TP RV
Sbjct: 261 -------EAERILTTRHRKVYEAIVYVKDGITKEEVEKVVKSLKNA----EIKQRTPRRV 309
Query: 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
L+ R+ L R + + +K E I ++F L + T G YIKE + GD GRT PS+ ILG
Sbjct: 310 LNSRADLVRVRKVYDVKGELI--DDKHFKLRLVTDGGLYIKELISGDRGRTTPSVSEILG 367
Query: 541 CRAEILQLDVTDV 553
A LDV +V
Sbjct: 368 KEAWCEILDVLEV 380
>sp|D5TZL3|PUS10_THEAM tRNA pseudouridine synthase Pus10 OS=Thermosphaera aggregans
(strain DSM 11486 / M11TL) GN=pus10 PE=3 SV=1
Length = 441
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 15/240 (6%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEE-RMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
TP+ G Y K RN+S W+ + R SI+E + + + K HAAGRED
Sbjct: 209 TPVLLKGVYNKRGRNISHVPWLAKQGGRKYPLSIQEYLESRLADPFKAKKVKIHAAGRED 268
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVK--EIESKINSLENKLVRVKNLKIVGSQGWTL 430
+D R LG GRP + EI E LV+ +IE + + LV V+ K + L
Sbjct: 269 VDARTLGPGRPLVIEI-------VEPLVRSYDIEDVNKLIRSDLVEVRVHKPASRRDIEL 321
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLERE 490
+++ EK+K Y LV S P+ + + + + I Q+TPIR+L R+ + R
Sbjct: 322 LKQTSREKRKVYRLLVVSSTPISEAQLNELEAYFNDI---AIQQRTPIRILTRKKDVLRV 378
Query: 491 KIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 550
+ + ++ + ++ +S L++ C G Y+KE VH D GRTNP SIL + ++LDV
Sbjct: 379 RKVYEVRTKPVSSTSFEALVY-C-DGGLYVKELVHCDQGRTNPCFASILNTELKPVELDV 436
>sp|Q9YEN2|PUS10_AERPE tRNA pseudouridine synthase Pus10 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=pus10 PE=3 SV=2
Length = 437
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+ + RY K +RN+SQ W E S+E+ + +L + G+ HAAGRED+D
Sbjct: 199 LLYKARYWKLARNISQAYWPTPEGPR-YFSVEQALW-PVLKLTGGERLVVHAAGREDVDA 256
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLGSGRP + E+++ R + ++E+E+ N+ LVR + L +E
Sbjct: 257 RMLGSGRPMIVEVKSPRR--RRIPLEELEAAANAGGKGLVRFRFETAAKRAEVALYKEET 314
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINW 495
A +K Y ALV + + + D + L+ + I+Q+TP RVLHRR + R + +
Sbjct: 315 ARVRKVYRALVAVEGGVSEVD---VEGLRRALEGAVIMQRTPSRVLHRRPDILRRRRLYS 371
Query: 496 MKIEKIAGSSQYFLLHMC---TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
+ + G+ L C + G YIKE V GD GRT PS +LG A ++LDV
Sbjct: 372 LDCSPLEGAP----LMECILEAEGGLYIKELVSGDGGRTRPSFAEVLGREAVCIELDVVW 427
Query: 553 VK 554
V+
Sbjct: 428 VE 429
>sp|E0SNQ8|PUS10_IGNAA tRNA pseudouridine synthase Pus10 OS=Ignisphaera aggregans (strain
DSM 17230 / JCM 13409 / AQ1.S1) GN=pus10 PE=3 SV=1
Length = 430
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 10/231 (4%)
Query: 320 GRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRML 378
GRY K R +SQ W+ + + SIEEI ++ GD H AGRED+DVR L
Sbjct: 201 GRYWKLGRMISQNIWLTKNGVKKYPLSIEEI-AKMLVKDGFGDDVVLHIAGREDVDVRTL 259
Query: 379 GSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEK 438
GSGRPF+ EI+ R+ + +K+IE+++NS+ L N+ V + +++G
Sbjct: 260 GSGRPFVLEIKRPRK--RNIDIKDIENRLNSISRWLKFELNM-FVDRDFVSRVKKGCRTS 316
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKI 498
K Y A+V R + ED I L+E R I Q+TP RVL R+ + R + + +K
Sbjct: 317 YKIYRAIVVADRDIGIED---IKRLEEFFRDRIIEQRTPTRVLRRKKDVLRRRKVFEIKT 373
Query: 499 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLD 549
I S + F + + G Y+KE + GD GRT PS S+L L LD
Sbjct: 374 RVI--SPRVFEALIKCEGGLYVKELISGDNGRTVPSFSSVLNANTLCLTLD 422
>sp|B9LQ94|PUS10_HALLT tRNA pseudouridine synthase Pus10 OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=pus10 PE=3 SV=1
Length = 427
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVL 481
+ + R E + K+Y A V + +++ E + + Q TP RV
Sbjct: 288 LATYD--MVERVKEHDAAKRYRAEVAFDADVD---ADALAAAVEELEGTTVEQYTPNRVD 342
Query: 482 HRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGC 541
HRR+ + RE+ + E +++ ++ + + G YIKE + GD GRT PS+ +LG
Sbjct: 343 HRRASITRERDVYEATAE--LDDARHAIVEIHGEGGLYIKELISGDEGRTEPSLAGLLGV 400
Query: 542 RAEILQLDVTDVK 554
AE+ LDV V+
Sbjct: 401 GAEVTALDVVAVE 413
>sp|A4WLQ5|PUS10_PYRAR tRNA pseudouridine synthase Pus10 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=pus10 PE=3 SV=1
Length = 411
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 110/250 (44%), Gaps = 44/250 (17%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGE---------ASIEEIIGGNILPMCRGDSY 363
R PI GGRYLK R ++Q + R G A + + GG + +
Sbjct: 190 RNPILIGGRYLKLGRKIAQAK------RFGNVRTTLLEKLAYLRDTFGG--------EDH 235
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GRED D RMLGSGRP + E++ ++ + +K V +
Sbjct: 236 VIHVSGREDSDARMLGSGRPLVVEVKQPLRYTAQ---------VAPFRDKDVIFLPVGFT 286
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV--L 481
++E K Y LV PL+ +D +S+L + Q TP R+ L
Sbjct: 287 DRNEVRRLKEKAKTDIKLYRVLVLSESPLKQDDLSKLSALSGAT----VTQYTPRRIKRL 342
Query: 482 HRRSPLEREKI-INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILG 540
H R R + W + S F L++ Q G Y+KEFVHGD GRT P++ +L
Sbjct: 343 HPRKKRVRMVYDVAWRLV-----SPHVFELYIRCQGGLYVKEFVHGDGGRTAPNVAELLN 397
Query: 541 CRAEILQLDV 550
R E+L+LDV
Sbjct: 398 TRLEVLELDV 407
>sp|A8MDD0|PUS10_CALMQ tRNA pseudouridine synthase Pus10 OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=pus10 PE=3 SV=1
Length = 401
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
PIY RY K R + Q +G++S+ + ++ R + H AG E +
Sbjct: 195 PIYIEARYRKLIRGIPQ---------VGDSSVASV-AREVVSELRPLNVVLHFAGIEGPE 244
Query: 375 VRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
VR+LG GRP + E R +P ++ + V++ NLK G ++
Sbjct: 245 VRVLGLGRPMIIEATRPLRRSLPGGIITRH-----------GVQLLNLKAAGKVQVREIK 293
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKI 492
E ++ + LV + + DE +++ + Q + K R K+
Sbjct: 294 SKAGELRRVFRILVKLHGSVTDEQLRSLEDYFSNRQIRQSMGKG-----------RRVKL 342
Query: 493 INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTD 552
I +K+ + GS +++ TQ G ++ F+ G+ T PS+ LG + +++D+ +
Sbjct: 343 IYGLKVVPVHGSILELIVN--TQGGFSVRRFITGE--GTEPSVSGTLGIKVTPIEIDILN 398
Query: 553 V 553
+
Sbjct: 399 I 399
>sp|A9A215|PUS10_NITMS tRNA pseudouridine synthase Pus10 OS=Nitrosopumilus maritimus
(strain SCM1) GN=pus10 PE=3 SV=1
Length = 381
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 345 SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIE 404
S+E I + G + KF G ED +LG+GRPF +IQN + +++
Sbjct: 199 SVEGEISQFLFKKLGGTTAKFTWIGGEDKSSLILGTGRPFFVKIQNPHK-------RKLR 251
Query: 405 SKINSLENKLVRVKNLKIVG-SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
+K +LE+ ++V N KIV S L E + ++++ D + + L
Sbjct: 252 AKSANLEH--IKVSNFKIVADSPKKPLKFNSSVEARISTSSII---------DAKLLRKL 300
Query: 464 KETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEF 523
K L K PI V + +S EK I +K +K +S F L + G +K F
Sbjct: 301 KN-------LTKKPIAV-YEKSGKRSEKRILSIKYKKSDETS--FTLFFKFEGGLPVKRF 350
Query: 524 VHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 555
V GD +P I IL + L+ D DV++
Sbjct: 351 VTGD--DVSPGISQILDMSCKCLEFDFHDVEV 380
>sp|E1QUT8|PUS10_VULDI tRNA pseudouridine synthase Pus10 OS=Vulcanisaeta distributa
(strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)
GN=pus10 PE=3 SV=1
Length = 412
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 31/242 (12%)
Query: 315 PIYFGGRYLKYSRNVS---QTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
PIY RY K R ++ Q +W ID ++ H G +
Sbjct: 197 PIYISARYRKVHRLINEEGQVKWPIDR---------------VIQAYNAQDVVIHTGGED 241
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
+ VR+LG+GRP + ++ + P V ++ + + +V + NL V + M
Sbjct: 242 PMGVRVLGNGRPVILQVVKPSKRPD---VNDVYALLKDSGYDIV-LDNLSRVRASAVVKM 297
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREK 491
+ + Y L + +E+ I SL + R Q++Q V R + R
Sbjct: 298 KARVRDYVITYRVLAITDNSVTNEN---IKSLHDYFRNRQVVQ-----VFRRGRRIRRRI 349
Query: 492 IINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 551
+ + ++ L C Q YI+ FVHG LG PSI LG +++D+
Sbjct: 350 SMVYELDGRVIRDRLVEFLIRC-QGNLYIRGFVHGGLGDVEPSIAGTLGFSVRPVEIDIL 408
Query: 552 DV 553
++
Sbjct: 409 NI 410
>sp|P95979|DPOL3_SULSO DNA polymerase 3 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=dpo3 PE=3 SV=1
Length = 764
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 400 VKEIESKINSLENKLVRVK----NLKIVGSQGWTLMREGE----AEKQKQYAALVWISRP 451
V E+ +KINSL N V+VK +L ++ + + + EG+ A K ++ L ++R
Sbjct: 555 VNELITKINSLYNLDVKVKIFYKSLLVLDNNRYAGLSEGDKIDIARKGEEDMNLCELARN 614
Query: 452 LQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEK 500
++ + + I K+ + ++++ T I++ RR + E++I W KIE+
Sbjct: 615 IKRKIIEEILISKDVKKAIKLVKSTVIKL--RRGEFDNEELITWAKIER 661
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=truB PE=3 SV=2
Length = 354
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIE 499
K+Y ++ + RP++++ + + L E +I QK P+R +R+ L ++ +IE
Sbjct: 118 KEYVCVMQLHRPVEEDRLREVLKLFEG----EIYQKPPLRSSVKRA-LRTRRVF---RIE 169
Query: 500 KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
+ + +Y LL + +AGTY+++ IG +LG A + +L
Sbjct: 170 LLEYTGKYALLRVDCEAGTYMRKLCW--------DIGLVLGVGAHMREL 210
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 463 LKETVRCYQ--ILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYI 520
L+ +R +Q I QK P+R +R L ++ + +E + +Y ++ M +AGTY
Sbjct: 114 LRAVLREFQGEIYQKPPLRSAVKRQ-LRTRRVFS---LELLELEGRYAVIKMHVEAGTYA 169
Query: 521 KEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCF 558
++ +H IG +LG A + +L V + CF
Sbjct: 170 RKIIH--------DIGEVLGVGANMREL--RRVAVTCF 197
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 471 QILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGR 530
+I QK P+R +R L ++ + +E + +Y +L M +AGTY ++ +H
Sbjct: 124 EIYQKPPLRSAVKRQ-LRTRRVYS---LELLELDGRYAVLKMHVEAGTYARKLIH----- 174
Query: 531 TNPSIGSILGCRAEILQLDVTDVKMNCF 558
+G ILG A + +L V ++CF
Sbjct: 175 ---DLGEILGVGANMREL--RRVAVSCF 197
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIE 499
K+Y ++ + + +E+ + + E ILQ+ P+R +R R K I ++ I
Sbjct: 106 KEYVTIMHLHGDVDEEELERVVKEFEGT----ILQRPPLRSAVKRR--VRPKKIYYIDIL 159
Query: 500 KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 548
+I G L+ + QAGTYI++ H IG LG A + +L
Sbjct: 160 EIDGRD--VLMRVGCQAGTYIRKLCH--------DIGEALGVGAHMAEL 198
>sp|Q1MN41|TRUB_RHIL3 tRNA pseudouridine synthase B OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=truB PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS------- 362
L P+ FG + VS+ +W+ E+ G A + + +LP+ GD+
Sbjct: 16 LILDKPVDFGS-----TEAVSKIKWLYKAEKAGHAGTLDPLASGMLPIALGDATKTVPYV 70
Query: 363 ------YKFHAA-GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEI-ESKINSLENKL 414
Y+F + G E + G +++ + PSE +++I I ++
Sbjct: 71 MDGRKIYEFTVSWGEERATDDLEGD------VTKSSDKRPSEQQIRDILPGYIGTISQVP 124
Query: 415 VRVKNLKIVGSQGWTLMREGE 435
+ +KI G + + L REGE
Sbjct: 125 PQFSAIKIAGERAYDLAREGE 145
>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 369 GREDIDVRM-----LGSGRPFLFEIQNAREVPSELLVKE-IESKINSLENKLVRVKNLKI 422
GRE ++V M + S R + A E E VKE E K SL V + +
Sbjct: 2 GREVVEVLMDRNADVSSARVHVAPKIAAEETDEEFEVKECTEEK--SLSENAPNVGSAER 59
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTI 460
VG+Q R G A+ KQ A L+ + +PLQ E+ + I
Sbjct: 60 VGAQKSPKTRNGNAKVSKQDAPLLAVRKPLQPENKKHI 97
>sp|Q2KDZ7|TRUB_RHIEC tRNA pseudouridine synthase B OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=truB PE=3 SV=1
Length = 310
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS------- 362
L P+ FG + VS+ +W+ ++ G A + + +LP+ GD+
Sbjct: 16 LILDKPMDFGS-----TEAVSKLKWLYKAQKAGHAGTLDPLASGMLPIALGDATKTVPYV 70
Query: 363 ------YKFHAA-GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESK-INSLENKL 414
Y+F + G E + G Q++ P+E +++I + I ++
Sbjct: 71 MDGRKIYEFTVSWGEERATDDLEGD------VTQSSERRPTEQQIRDILPRYIGTISQVP 124
Query: 415 VRVKNLKIVGSQGWTLMREGEA 436
+ +KI G + + L R+GEA
Sbjct: 125 PQFSAIKIAGERAYDLARDGEA 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,155,539
Number of Sequences: 539616
Number of extensions: 8259499
Number of successful extensions: 22537
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 22430
Number of HSP's gapped (non-prelim): 45
length of query: 561
length of database: 191,569,459
effective HSP length: 123
effective length of query: 438
effective length of database: 125,196,691
effective search space: 54836150658
effective search space used: 54836150658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)