Query 008562
Match_columns 561
No_of_seqs 192 out of 385
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9k_A Uncharacterized protein 100.0 5E-121 2E-125 987.4 34.9 469 46-556 10-523 (530)
2 2aus_C Pseudouridine synthase; 99.5 2.2E-13 7.5E-18 141.5 15.9 152 385-553 48-205 (334)
3 2apo_A Probable tRNA pseudouri 99.4 1.4E-12 4.8E-17 136.5 15.1 151 385-553 68-225 (357)
4 1k8w_A TRNA pseudouridine synt 99.1 3.6E-10 1.2E-14 117.0 13.0 165 365-553 11-218 (327)
5 3u28_A H/ACA ribonucleoprotein 99.1 7.7E-10 2.6E-14 117.1 15.0 149 385-553 61-221 (400)
6 1r3e_A TRNA pseudouridine synt 98.9 1.8E-08 6E-13 103.7 15.9 149 385-553 5-196 (309)
7 1sgv_A TRNA pseudouridine synt 98.5 8.1E-07 2.8E-11 91.6 14.6 150 385-553 8-204 (316)
8 1dj0_A Pseudouridine synthase 95.6 0.32 1.1E-05 48.8 16.0 150 343-517 26-193 (264)
9 1vs3_A TRNA pseudouridine synt 95.0 0.52 1.8E-05 46.8 15.0 148 344-516 26-192 (249)
10 1qv9_A F420-dependent methylen 45.2 5.4 0.00018 39.9 0.6 15 368-382 28-42 (283)
11 2lnw_A VAV-2, guanine nucleoti 20.8 1.9E+02 0.0064 24.9 6.2 73 446-540 23-96 (122)
No 1
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=100.00 E-value=5.4e-121 Score=987.40 Aligned_cols=469 Identities=35% Similarity=0.585 Sum_probs=410.3
Q ss_pred HHHHHHHHhCCCchhhhhhhhcccccccchhhHHH---HHhhhhccccc-------------------------ccccc-
Q 008562 46 TDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKS---LLCHVLGEQAD-------------------------LHQNI- 96 (561)
Q Consensus 46 ~~av~~Lls~G~C~rCi~Rf~~~~~~~~~n~~lk~---~L~~~L~~~~D-------------------------l~~~~- 96 (561)
.+++++|++.|||.||||||++++++++|..++.. .|+.++.+.++ +.+.+
T Consensus 10 ~~~~~~L~~~g~C~rCilRf~~~~~~~~y~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~k~~r~~~~~~~~~~~~~~~~ 89 (530)
T 2v9k_A 10 KHVAQLLLNTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKKIRLQELEDSIDNLSQNGE 89 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTCCCSGGGGSCHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHCCCCHHHHhHhhcCccchhhhhhHHHHHHHHHHHhhccccccccccccccchhhccccccccccccccccc
Confidence 58999999999999999999999999999988533 35666553111 11111
Q ss_pred -------------CCCCCcccccccccccccccCCccccccccchhHHHHHHHHHHHhcCCccceEEEEeecChhHHhhh
Q 008562 97 -------------SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENE 163 (561)
Q Consensus 97 -------------~~~~~~~C~iClGiLq~~~~d~~~~~~~~~~~~d~~~~I~e~vk~~gyef~sF~L~ISLP~~l~lRE 163 (561)
.....+.|++|+|+||.... ++|+++|+++++++||+|++|+|+++||+++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~C~iClGil~~~~~------------~~~~~~i~~~v~~~~yef~tF~lgvslP~~i~~rE 157 (530)
T 2v9k_A 90 GRISVSHVGSTASKNSNLNVCNVCLGILQEFCE------------KDFIKKVCQKVEASGFEFTSLVFSVSFPPQLSVRE 157 (530)
T ss_dssp ------------------CCCTTTTTTTTGGGS------------HHHHHHHHHHHHHTCCCCSCBEEEEECCTTHHHHH
T ss_pred cccccccccccccccCCCCcCcCccchhhhcch------------HHHHHHHHHHHhhcCCccccEEEEEeCCHHHHHHH
Confidence 11245689999999984321 58999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccccccccccccccccchhhHHHHhhhhhHHhHhccccCC-ceeEEEEEEecchhhHHHhhhhhhhcccc
Q 008562 164 NKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-STFHIRLTYSRVEASIRIQNFVEKIEGCK 242 (561)
Q Consensus 164 ~s~~l~l~~~~~~~~~~~~~~~~~~v~~Kea~K~~l~~~l~~~L~~~~~~-s~f~i~v~~~h~~~~~e~~~l~~~~~~~k 242 (561)
+++|++++++||+..+..+. ++.+++|++|||.+++.|+++||++++. |+|.|.+.|+|++++.++++|.+..+++
T Consensus 158 ~~l~~~~~~~~~~~~l~~~~--~~~e~iK~e~kr~lgk~l~~~lg~~~~~~sp~~v~v~~~~~~~~~d~~~L~~~~~~~- 234 (530)
T 2v9k_A 158 HAAWLLVKQEMGKQSLSLGR--DDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDC- 234 (530)
T ss_dssp HHHHHHHHHHHHHTTCCCCG--GGSCCHHHHHHHHHHHHHHHHHSSCBCTTCSEEEEEEEECGGGTHHHHHHHTTCTTC-
T ss_pred HHHHHHHHHhccccccccCC--CCceeHHHHHHHHHhHHHHHHhCCCcCCCCCeEEEEEecCccchhhhhhhhhhcccc-
Confidence 99999999999976444333 3579999999999999999999999885 5599999999999999999998655544
Q ss_pred ccccccccccccccccccccccccceeeecccccccccccCCCCCCCCCcccccCCCCCCCCce-eeEEEEeccEEEEEE
Q 008562 243 RRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGR 321 (561)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~~~f~~~~~~~Pp~~v~~~~~-~~~~~~~~pi~i~GR 321 (561)
|++.+++++++|+ +.+.++|+ +|++++|. +++++||..+.++|+ ++++|.|+||||+||
T Consensus 235 ---------f~~~k~~~~~~t~---~~v~~~l~-------~i~~~~f~-~~~~~Pp~~~~~~~~~~~i~~~~~pifi~GR 294 (530)
T 2v9k_A 235 ---------FKPAKNKQSVFTR---MAVMKALN-------KIKEEDFL-KQFPCPPNSPKAVCAVLEIECAHGAVFVAGR 294 (530)
T ss_dssp ---------C----------CH---HHHHHHHH-------HSCHHHHH-HHSCSSCCCCSSCCEEEEEEEEECCEEEEEE
T ss_pred ---------cccccccccchhH---HHHHHHHh-------hcChhhHh-hcccCCCCCccccceeEEEEEccCcEEEEEE
Confidence 3344455566654 55666666 89999999 999999999999996 689999999999999
Q ss_pred eeecccCCCCcccccCccccCcCcHHHHhhhccccccCCCceEEeecCCCCccccccCCCccEEEEEecCccCC-cHHHH
Q 008562 322 YLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLV 400 (561)
Q Consensus 322 Y~K~sR~lsQTpW~~~g~r~~~~SVeE~I~~~~~~~f~~~~~~F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~-~~~~~ 400 (561)
|+||+|+||||||+++|+|++++||||+|+.+++++|+|++++|||||||||||||||+|||||+||.|||++. +..++
T Consensus 295 Y~K~~R~ipQT~W~~~g~r~~~~SVee~I~~~i~~~f~~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~~~dl 374 (530)
T 2v9k_A 295 YNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEI 374 (530)
T ss_dssp EEECCSSCCSSCCBSSSSBSSSCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHH
T ss_pred EeeccCCCCCCCcccCCCccCCCCHHHHHHHHHHHhcCCCeEEEeecCCCCCceeecCCCCcEEEEecCccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864 56899
Q ss_pred HHHHHHHhccCCCcEEEEeeEEecchhhhhhhcccccccceEEEEEEEcCCCCHHHHHHHHhcccccceeeeeecCCeEE
Q 008562 401 KEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV 480 (561)
Q Consensus 401 ~~l~~~In~~~~~~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~~v~~e~l~~l~~~~~~~~~~~I~QkTP~RV 480 (561)
++|+++||+. .+.|+|++|++++++++..||+|+++|.|.|+|+||+++++++++|+.+..+++ ++|.||||+||
T Consensus 375 ~~le~~IN~~-~~~V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~v~~e~l~~~~~l~~----l~I~QrtP~RV 449 (530)
T 2v9k_A 375 KELQQKINNS-SNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRV 449 (530)
T ss_dssp HHHHHHHHTT-CSSEEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSCCCHHHHGGGGGCCS----EEEEEECCGGG
T ss_pred HHHHHHHhcc-CCcEEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCCCCHHHHHHHHhcCC----ceeeccCCeEE
Confidence 9999999974 567999999999999999999999999999999999999999999999888999 99999999999
Q ss_pred EeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhhcCCccEEEEEEEEEEecc
Q 008562 481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556 (561)
Q Consensus 481 lhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~iLg~~adileLDV~~V~~d 556 (561)
+|||++++|+|+||+|++..+++ ++|+|+|.||||||||||||||||||+||||++||++|+|++|||++|+||
T Consensus 450 ~hRR~~~~R~R~I~~i~~~~~~~--~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eLDV~~V~~d 523 (530)
T 2v9k_A 450 LHRRPLAVRARVIHFMETQYVDE--HHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 523 (530)
T ss_dssp TTTSCCCEEEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEEEEEEECCC
T ss_pred EEecCCCccceEEEEEEEEEecC--CEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEeEEeEEecc
Confidence 99999999999999999999975 999999999999999999999999999999999999999999999999999
No 2
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=99.50 E-value=2.2e-13 Score=141.52 Aligned_cols=152 Identities=22% Similarity=0.363 Sum_probs=109.4
Q ss_pred EEEEecCccCCcHHHHHHHHHHHhccCCC-----cEEEEeeEEecchhhhhhhcccccccceEEEEEEEcCCCCHHHHHH
Q 008562 385 LFEIQNAREVPSELLVKEIESKINSLENK-----LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459 (561)
Q Consensus 385 vlEi~nPr~~~~~~~~~~l~~~In~~~~~-----~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~~v~~e~l~~ 459 (561)
++-|..|.-..|.+-+..+...+|...-| +-...++-++.-....++-+.-....|+|+|.+++..+++++++++
T Consensus 48 il~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~~~~~~~i~~ 127 (334)
T 2aus_C 48 VINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHGDVPEDKIRA 127 (334)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESSCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECCCCCHHHHHH
Confidence 78888898777778888888888752111 0012233332222223333334446799999999999999999998
Q ss_pred -HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhh
Q 008562 460 -ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 538 (561)
Q Consensus 460 -l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~i 538 (561)
+..|.| +|.|.||.++.++|+ .|+++||++++..++. .+|.+++.|++||||+.|+|. ||..
T Consensus 128 ~l~~f~G-----~i~Q~pP~~SA~k~~--~R~v~I~~~~~~~~~~--~~~~~~v~cs~GTYIRsL~~D--------ig~~ 190 (334)
T 2aus_C 128 VMKEFEG-----EIIQRPPLRSAVKRR--LRTRKVYYIEILEIDG--RDVLFRVGVEAGTYIRSLIHH--------IGLA 190 (334)
T ss_dssp HHHHTSE-----EEECC--------------EEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHH--------HHHH
T ss_pred HHHhCcC-----eEEEeCCccccCcCC--cCCEEEEEEEEEEeeC--CeEEEEEEECCCcHHHHHHHH--------HHHH
Confidence 789999 999999999999997 8999999999998864 799999999999999999995 8999
Q ss_pred cCCccEEEEEEEEEE
Q 008562 539 LGCRAEILQLDVTDV 553 (561)
Q Consensus 539 Lg~~adileLDV~~V 553 (561)
||+.|++.+|+.+.+
T Consensus 191 Lg~~a~~~~LrRt~~ 205 (334)
T 2aus_C 191 LGVGAHMAELRRTRS 205 (334)
T ss_dssp HSSCEEEEEEEEEEE
T ss_pred hCCCEEEeEEEEEEE
Confidence 999999999999876
No 3
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=99.42 E-value=1.4e-12 Score=136.49 Aligned_cols=151 Identities=21% Similarity=0.296 Sum_probs=106.7
Q ss_pred EEEEecCccCCcHHHHHHHHHHHhccCCC-----cEEEEeeEEec-chhhhhhhcccccccceEEEEEEEcCCCCHHHHH
Q 008562 385 LFEIQNAREVPSELLVKEIESKINSLENK-----LVRVKNLKIVG-SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458 (561)
Q Consensus 385 vlEi~nPr~~~~~~~~~~l~~~In~~~~~-----~V~v~~L~~v~-r~~~~~ik~~e~~k~K~Y~alv~~~~~v~~e~l~ 458 (561)
++-|..|.-..|.+-+..+...+|...-| +-...++-++- -+..+.+ +--....|+|+|.+++..++++++++
T Consensus 68 il~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~-~~l~~~~K~Y~~~~~lG~~~~~~~i~ 146 (357)
T 2apo_A 68 VVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTI-PMWHIPPKEYVCLMHLHRDASEEDIL 146 (357)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGG-GGTTSSCEEEEEEEEESSCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHH-HHhccCCcEEEEEEEECCCCCHHHHH
Confidence 77788898766777788888877752110 00111221221 1122222 22223569999999999999999999
Q ss_pred H-HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhh
Q 008562 459 T-ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGS 537 (561)
Q Consensus 459 ~-l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~ 537 (561)
+ +..|.| +|.|.+|.++.++|+ .|+++||++++..++. ..|.+++.|++||||+.|+|. ||.
T Consensus 147 ~~l~~f~G-----~i~Q~PP~~SAvK~~--~R~v~I~~~~l~~~~~--~~~~~~v~cs~GTYIRsL~~D--------iG~ 209 (357)
T 2apo_A 147 RVFKEFTG-----RIYQRPPLKAAVKRR--LRIRKIHELELLDKDG--KDVLFRVKCQSGTYIRKLCED--------IGE 209 (357)
T ss_dssp HHHHHHSE-----EEECC-------------CEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHH--------HHH
T ss_pred HHHHhCcc-----cEEEeCCchhhcccc--ccceeEEEEEEEEeeC--CEEEEEEEECCCchHHHHHHH--------HHH
Confidence 8 889999 999999999999997 8999999999998864 799999999999999999995 899
Q ss_pred hcCCccEEEEEEEEEE
Q 008562 538 ILGCRAEILQLDVTDV 553 (561)
Q Consensus 538 iLg~~adileLDV~~V 553 (561)
.||+.|++.+|+.+.+
T Consensus 210 ~LG~~a~~~~LrRt~~ 225 (357)
T 2apo_A 210 ALGTSAHMQELRRTKS 225 (357)
T ss_dssp HTTSCEEEEEEEEEEE
T ss_pred hhCCCEEEEEEEEEEE
Confidence 9999999999999876
No 4
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=99.12 E-value=3.6e-10 Score=117.01 Aligned_cols=165 Identities=15% Similarity=0.249 Sum_probs=117.6
Q ss_pred EeecCCCCccccccCCCccEEEEEecCccCCcHHHHHHHHHHHhccCC----------CcEEEEeeEEecchhhhhhhcc
Q 008562 365 FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLEN----------KLVRVKNLKIVGSQGWTLMREG 434 (561)
Q Consensus 365 F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~~~~~~~~l~~~In~~~~----------~~V~v~~L~~v~r~~~~~ik~~ 434 (561)
-|+||----.-|++ +| ++=|..|.-..+..-+..+...++...- ..|-+..+.-.+| .+..|...
T Consensus 11 ~~~~~~~~~~~~~~-~G---il~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTK-l~~~l~~~ 85 (327)
T 1k8w_A 11 HHSSGHIEGRHMDI-NG---VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK-FSQYLLDS 85 (327)
T ss_dssp -----------CCC-CE---EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGG-GTHHHHTS
T ss_pred cccccccccccCCC-Ce---EEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHh-HHHHhccC
Confidence 35666543333333 34 6777778766666667777776664210 0244444444444 34455532
Q ss_pred cccccceEEEEEEEcC-----------------CCCHHHHHH-HHhcccccceeeeeecCCeEEEee----cC-------
Q 008562 435 EAEKQKQYAALVWISR-----------------PLQDEDFQT-ISSLKETVRCYQILQKTPIRVLHR----RS------- 485 (561)
Q Consensus 435 e~~k~K~Y~alv~~~~-----------------~v~~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhR----R~------- 485 (561)
.|.|+|.+++.. .++.+++++ |..|.| +|.|.+|..+..+ |+
T Consensus 86 ----~K~Y~a~~~lG~~TdT~D~eG~v~~~~~~~~t~e~i~~~l~~f~G-----~i~Q~PP~~SAvKv~GkraYelAR~G 156 (327)
T 1k8w_A 86 ----DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-----DIEQIPSMYSALKYQGKKLYEYARQG 156 (327)
T ss_dssp ----CEEEEEEEEETEEESSSBTTSCEEEECCCCCCHHHHHHHHHTTSE-----EEEECCCSSSCCEETTEEHHHHHHTT
T ss_pred ----CcEEEEEEEECCcccCCCCCCCEEeecCCCCCHHHHHHHHHhccc-----eEEEeCChhheeccCCccHHHHHhCC
Confidence 599999999876 689999998 889999 9999999987554 22
Q ss_pred ----CCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhhcCCccEEEEEEEEEE
Q 008562 486 ----PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553 (561)
Q Consensus 486 ----~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~iLg~~adileLDV~~V 553 (561)
...|+.+||++++..++. ..|.+++.|+.||||+.++|. ||..||+.|.+.+|..+.+
T Consensus 157 ~~ve~~~R~v~I~~i~ll~~~~--~~~~~~v~CskGTYIRsL~~D--------iG~~Lg~~a~~~~LrRt~~ 218 (327)
T 1k8w_A 157 IEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDD--------LGEKLGCGAHVIYLRRLAV 218 (327)
T ss_dssp CCCCCCCEEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHH--------HHHHHTSCEEEEEEEEEEE
T ss_pred CcccccceEEEEEEEEEEEeeC--CEEEEEEEEcCCchHHHHHHH--------HHHHhCCCeEEEEEEEEEE
Confidence 669999999999988753 789999999999999999995 8999999999999999876
No 5
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=99.10 E-value=7.7e-10 Score=117.13 Aligned_cols=149 Identities=15% Similarity=0.239 Sum_probs=107.4
Q ss_pred EEEEecCccCCcHHHHHHHHHHHhccCCC----------cEEEEeeEEecchhhhhhhcccccccceEEEEEEEcCCC-C
Q 008562 385 LFEIQNAREVPSELLVKEIESKINSLENK----------LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPL-Q 453 (561)
Q Consensus 385 vlEi~nPr~~~~~~~~~~l~~~In~~~~~----------~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~~v-~ 453 (561)
++=|-.|.-..|.+-+..+...++...-| .|-+--+.-.+| -+..+.. ..|.|+|.+++.... +
T Consensus 61 il~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~aTK-l~~~l~~----~~K~Y~a~~~lG~~~~~ 135 (400)
T 3u28_A 61 VINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATR-LVKSQQG----AGKEYVCIVRLHDALKD 135 (400)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGGGG-GHHHHHH----SCEEEEEEEEESSCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChHHh-HhHHhcC----CCcEEEEEEEeCCCCCC
Confidence 45556676555666677777766642110 122222221222 1222332 359999999999866 5
Q ss_pred HHHHHH-HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcC
Q 008562 454 DEDFQT-ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTN 532 (561)
Q Consensus 454 ~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~ 532 (561)
++++++ |..|.| .|.|.+|..+..+|. .|.++||++++..++.....|.++|.|++||||+.++|.
T Consensus 136 ~~~i~~~l~~f~G-----~i~Q~PP~ySAvK~~--~R~v~I~~i~ll~~~~~~~~~~~~V~CskGTYIRsL~~D------ 202 (400)
T 3u28_A 136 EKDLGRSLENLTG-----ALFQRPPLISAVKRQ--LRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVH------ 202 (400)
T ss_dssp TTHHHHHHHHTCE-----EEEECCC-----CCC--CEEEEEEEEEEEEEETTTTEEEEEEEECTTCCHHHHHHH------
T ss_pred HHHHHHHHHhCcC-----ceEEECCceecccCC--ceeEEEEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHH------
Confidence 788888 899999 899999999999998 799999999999887533579999999999999999997
Q ss_pred cchhhhcCCccEEEEEEEEEE
Q 008562 533 PSIGSILGCRAEILQLDVTDV 553 (561)
Q Consensus 533 PSl~~iLg~~adileLDV~~V 553 (561)
||..||+.|+|.+|.-+.+
T Consensus 203 --iG~~LG~gahm~~LrRt~~ 221 (400)
T 3u28_A 203 --LGMLLGVGGHMQELRRVRS 221 (400)
T ss_dssp --HHHHHSSCEEEEEEEEEEE
T ss_pred --HHHHHCCCEEEEEEEEEEE
Confidence 9999999999999998865
No 6
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=98.91 E-value=1.8e-08 Score=103.69 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=110.6
Q ss_pred EEEEecCccCCcHHHHHHHHHHHhccCCC----------cEEEEeeEEecchhhhhhhcccccccceEEEEEEEcC----
Q 008562 385 LFEIQNAREVPSELLVKEIESKINSLENK----------LVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISR---- 450 (561)
Q Consensus 385 vlEi~nPr~~~~~~~~~~l~~~In~~~~~----------~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~---- 450 (561)
++=|..|.-..|..-+..+...+|...-| .|-+-.+.-.++ -+..|. ...|.|+|.+++..
T Consensus 5 il~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTK-l~~~l~----~~~K~Y~a~~~lG~~TdT 79 (309)
T 1r3e_A 5 ILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTR-ILEFYK----DLKKVYWVKMRLGLITET 79 (309)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGG-GGGGGT----TSCEEEEEEEEETEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHh-HHHHhC----ccCcEEEEEEEECCcccC
Confidence 55566777656667777777777642110 122222221121 222333 33699999999873
Q ss_pred -------------CCCHHHHHH-HHhcccccceeeeeecCCeEEEee---------------cCCCceeeEEEEEEEEEE
Q 008562 451 -------------PLQDEDFQT-ISSLKETVRCYQILQKTPIRVLHR---------------RSPLEREKIINWMKIEKI 501 (561)
Q Consensus 451 -------------~v~~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhR---------------R~~~~R~R~Iy~~~~~~i 501 (561)
+++.+++++ |..|.| .|.|.+|..+..+ .....|+.+||++++..+
T Consensus 80 ~D~eG~v~~~~~~~~t~~~i~~~l~~f~G-----~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~ 154 (309)
T 1r3e_A 80 FDITGEVVEERECNVTEEEIREAIFSFVG-----EYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNI 154 (309)
T ss_dssp SBTTSCEEEECCCCCCHHHHHHHHHSSSE-----EEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHHhccc-----eEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEe
Confidence 478999998 899999 9999999987755 226699999999999887
Q ss_pred cCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhhcCCccEEEEEEEEEE
Q 008562 502 AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553 (561)
Q Consensus 502 ~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~iLg~~adileLDV~~V 553 (561)
+. .+|.+++.|+.||||+.++|. ||..||+.|++.+|.-+.+
T Consensus 155 ~~--p~~~~~v~CskGTYIRsL~~D--------iG~~Lg~~a~~~~LrRt~~ 196 (309)
T 1r3e_A 155 EG--RDVSFRVEVSPGTYIRSLCMD--------IGYKLGCGATAVELVRESV 196 (309)
T ss_dssp ET--TEEEEEEEECTTCCHHHHHHH--------HHHHTTSCEEEEEEEEEEE
T ss_pred eC--CEEEEEEEECCCchHHHHHHH--------HHHHhCCCEEEEEEEEEEE
Confidence 63 689999999999999999996 8999999999999998875
No 7
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=98.55 E-value=8.1e-07 Score=91.64 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEecCccCCcHHHHHHHHHHHhccC-----------CCcEEEEeeEEecchhhhhhhcccccccceEEEEEEEc----
Q 008562 385 LFEIQNAREVPSELLVKEIESKINSLE-----------NKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWIS---- 449 (561)
Q Consensus 385 vlEi~nPr~~~~~~~~~~l~~~In~~~-----------~~~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~---- 449 (561)
++=|..|.-..|..-+..+...++... .| |-+-.+.-.+| -+..| ....|.|+|.+++.
T Consensus 8 il~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtG-vL~i~iG~aTK-l~~~l----~~~~K~Y~~~~~lG~~Td 81 (316)
T 1sgv_A 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATG-VLVIGIERATK-ILGLL----TAAPKSYAATIRLGQTTS 81 (316)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEE-EEEEEEGGGGG-GGGGT----TTSCEEEEEEEEETEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeE-EEEEEECHHHh-HHHHh----CcCCcEEEEEEEECCccC
Confidence 566677876667677777777776421 11 22222221121 22233 23469999999986
Q ss_pred --------------CCCCHHHHHH-HHhcccccceeeeeecCCeEEEeec---------------CCCceeeEEEEEEEE
Q 008562 450 --------------RPLQDEDFQT-ISSLKETVRCYQILQKTPIRVLHRR---------------SPLEREKIINWMKIE 499 (561)
Q Consensus 450 --------------~~v~~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhRR---------------~~~~R~R~Iy~~~~~ 499 (561)
..++.+++++ |..|.| .|.|.+|.-...+. ....|+.+||++++.
T Consensus 82 T~D~eG~v~~~~~~~~~t~~~i~~~l~~f~G-----~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll 156 (316)
T 1sgv_A 82 TEDAEGQVLQSVPAKHLTIEAIDAAMERLRG-----EIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELL 156 (316)
T ss_dssp TSBTTSCEEEECCCTTCCHHHHHHHHHHTCE-----EC----------------------------CCCCCCEEEEEEEE
T ss_pred CCCCCCCEEEecCCCCCCHHHHHHHHHhccc-----cEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEE
Confidence 3578899998 899999 99999999876553 345788999999998
Q ss_pred EEcCC--ccEEEEEEEecCCceeeEeeeCCCCCcCcchhhhcCCccEEEEEEEEEE
Q 008562 500 KIAGS--SQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 553 (561)
Q Consensus 500 ~i~~~--~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~iLg~~adileLDV~~V 553 (561)
.++.. ...|.+++.|..||||+-++|. ||..||+.|++.+|-=+.+
T Consensus 157 ~~~~~~~~p~~~~~v~CskGTYIRsLa~D--------iG~~Lg~~a~~~~LrRt~~ 204 (316)
T 1sgv_A 157 AARRRDQLIDIDVEIDCSSGTYIRALARD--------LGDALGVGGHVTALRRTRV 204 (316)
T ss_dssp EEEEETTEEEEEEEEEESCCTTHHHHHHH--------HHHHHTSCEEEEEEEEEEE
T ss_pred EeeccCCCceEEEEEEECCCCcHHHHHHH--------HHHHhCCCEEEeeEEEEEE
Confidence 76421 2479999999999999999998 9999999999999976654
No 8
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=95.59 E-value=0.32 Score=48.75 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=98.1
Q ss_pred cCcHHHHhhhccccccCCCceEEeecCCCCccccccCCCccEEEEEecCccCCcHHHHHHHHHHHhccCCCcEEEEeeEE
Q 008562 343 EASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422 (561)
Q Consensus 343 ~~SVeE~I~~~~~~~f~~~~~~F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~~~~~~~~l~~~In~~~~~~V~v~~L~~ 422 (561)
..|||+.|.+.+..++ +..+.+++|||-|--|=-+|. |+.+.-|... +...+...+|..-..+|.|.+...
T Consensus 26 ~~TVq~~Le~AL~~~~-~~~v~~~~agRTDaGVHA~gq----v~~f~~~~~~----~~~~~~~~lN~~LP~dI~V~~~~~ 96 (264)
T 1dj0_A 26 VRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQ----VVHFETTALR----KDAAWTLGVNANLPGDIAVRWVKT 96 (264)
T ss_dssp SSCHHHHHHHHHHHHH-TSCCCEEESSCCCTTCEEEEE----EEEEEESCCC----CHHHHHHHHHHTSCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHh-CCCeEEEEeccCCCCCchhhE----EEEEEECCCC----CHHHHHHHHHhhCCcCeEEEEEEe
Confidence 3599999998888887 457999999999999999984 4444434332 234667788887667899999998
Q ss_pred ecchhhhhhhcccccccceEEEEEEE---------------cCCCCHHHHHH-HHhcccc--cceeeeeecCCeEEEeec
Q 008562 423 VGSQGWTLMREGEAEKQKQYAALVWI---------------SRPLQDEDFQT-ISSLKET--VRCYQILQKTPIRVLHRR 484 (561)
Q Consensus 423 v~r~~~~~ik~~e~~k~K~Y~alv~~---------------~~~v~~e~l~~-l~~~~~~--~~~~~I~QkTP~RVlhRR 484 (561)
|+..--.+ =.-+.|.|+=.++. ..+++.+.+++ ++.|.|+ +..+.-. ++
T Consensus 97 V~~~FhAR----f~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~M~~aa~~l~G~HDF~~F~~~-~~-------- 163 (264)
T 1dj0_A 97 VPDDFHAR----FSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-QC-------- 163 (264)
T ss_dssp CCTTCCTT----TTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCCT-TC--------
T ss_pred CCCCCCcc----cccccEEEEEEEccCCCCChhHcCceEeeCCCCCHHHHHHHHHHhcCcccHHHhccC-CC--------
Confidence 87542122 23356888887764 34677777776 4455541 1012100 00
Q ss_pred CCCceeeEEEEEEEEEEcCCccEEEEEEEecCC
Q 008562 485 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517 (561)
Q Consensus 485 ~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaG 517 (561)
....-.|+|+++++..-. ..+.++|..+|=
T Consensus 164 ~~~s~vR~I~~~~v~~~~---~~i~~~i~g~~F 193 (264)
T 1dj0_A 164 QSRTPWRNVMHINVTRHG---PYVVVDIKANAF 193 (264)
T ss_dssp CCSCCEEEEEEEEEEEET---TEEEEEEEESCC
T ss_pred CCCCcEEEEEEEEEEECC---CEEEEEEEEchH
Confidence 112345788988887642 578888888863
No 9
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=94.95 E-value=0.52 Score=46.84 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=94.3
Q ss_pred CcHHHHhhhccccccCCCceEEeecCCCCccccccCCCccEEEEEecCccCCcHHHHHHHHHHHhccCCCcEEEEeeEEe
Q 008562 344 ASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423 (561)
Q Consensus 344 ~SVeE~I~~~~~~~f~~~~~~F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~~~~~~~~l~~~In~~~~~~V~v~~L~~v 423 (561)
.|||+.|.+.|..+ +..+.+++|||-|--|=-+|. |+.+.-|...+ .+.+...+|..-..+|.|.+...|
T Consensus 26 ~TVq~~Le~AL~~~--~~~v~~~~agRTDaGVHA~gq----v~~f~~~~~~~----~~~~~~~lN~~LP~dI~V~~~~~v 95 (249)
T 1vs3_A 26 RTVQGELERALPGI--GALPKAVAAGRTDAGVHALAM----PFHVDVESAIP----VEKVPEALNRLLPEDLKVVGAREV 95 (249)
T ss_dssp CCHHHHHHHHGGGG--TBCSCCEESSCCBTTCEEEEE----EEEEEECSCCC----GGGHHHHHHHHSCTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHc--CCcceEEEeccCcCCcCcccc----EEEEEECCCCC----HHHHHHHHHhcCCcCEEEEEEEEC
Confidence 59999999888888 678999999999999999984 44443333322 234566778765567999999998
Q ss_pred cchhhhhhhcccccccceEEEEEEE---------------cCCCCHHHHHH-HHhcccc--cceeeeeecCCeEEEeecC
Q 008562 424 GSQGWTLMREGEAEKQKQYAALVWI---------------SRPLQDEDFQT-ISSLKET--VRCYQILQKTPIRVLHRRS 485 (561)
Q Consensus 424 ~r~~~~~ik~~e~~k~K~Y~alv~~---------------~~~v~~e~l~~-l~~~~~~--~~~~~I~QkTP~RVlhRR~ 485 (561)
+..--.+ =.-+.|.|+=.++. ..+++.+.+++ ++.|.|+ +..+.-.. +
T Consensus 96 ~~~FhAR----f~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ldi~~m~~aa~~l~G~HDF~~F~~~~-~--------- 161 (249)
T 1vs3_A 96 APDFHAR----KDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEE-T--------- 161 (249)
T ss_dssp CTTCCTT----TTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGCSSC-C---------
T ss_pred CCCCCcc----cccccEEEEEEEccCCCCChhhCCeeEEeCCCCCHHHHHHHHHHhcCceeHHheecCC-C---------
Confidence 7542222 23356888887765 34677777776 4444441 00021110 0
Q ss_pred CCceeeEEEEEEEEEEc-CCccEEEEEEEecC
Q 008562 486 PLEREKIINWMKIEKIA-GSSQYFLLHMCTQA 516 (561)
Q Consensus 486 ~~~R~R~Iy~~~~~~i~-~~~~~f~l~i~tqa 516 (561)
..-.|+|+++++.... .....+.++|..+|
T Consensus 162 -~~~vR~I~~~~v~~~~~~~~~~i~~~i~g~~ 192 (249)
T 1vs3_A 162 -RPGERELLEARLQVAEGEAGLEVRLYFRGKS 192 (249)
T ss_dssp -SCCEEEEEEEEEEEEECSSSEEEEEEEEESC
T ss_pred -CCCCcEEEEEEEEeccccCCCEEEEEEEECh
Confidence 2335678888876321 11256777777775
No 10
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=45.17 E-value=5.4 Score=39.90 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=13.5
Q ss_pred cCCCCccccccCCCc
Q 008562 368 AGREDIDVRMLGSGR 382 (561)
Q Consensus 368 sGREDvDVRmLG~GR 382 (561)
+-|||+||||+|+|-
T Consensus 28 AdRedI~vrv~gsGa 42 (283)
T 1qv9_A 28 ADREDVEFRVVGTSV 42 (283)
T ss_dssp SCCSSEEEEEEECTT
T ss_pred hccCCceEEEeccCC
Confidence 579999999999984
No 11
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=20.76 E-value=1.9e+02 Score=24.91 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=42.6
Q ss_pred EEEcCCCCHHHHHH-HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEee
Q 008562 446 VWISRPLQDEDFQT-ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFV 524 (561)
Q Consensus 446 v~~~~~v~~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfV 524 (561)
-|.++.++.++.+. |.. ...|.+-|. .+ ....--|.+.+.. .+...+|.+. ..++|.||
T Consensus 23 ~WyhG~isR~eAe~lL~~--~~~G~FLVR----------~S--~~~~g~y~LSv~~-~~~v~H~~I~-~~~~~~~l---- 82 (122)
T 2lnw_A 23 PWFAGNMERQQTDNLLKS--HASGTYLIR----------ER--PAEAERFAISIKF-NDEVKHIKVV-EKDNWIHI---- 82 (122)
T ss_dssp TTBCCSCCHHHHHHHHHH--SCTTBEEEE----------EC--CCSSEEEEEEEEC-SSCEEEEEEE-EETTEEES----
T ss_pred cCCCcCCCHHHHHHHhcC--CCCCeEEEE----------eC--CCCCCcEEEEEEe-CCcEEEEEEE-EcCCEEEE----
Confidence 48899999888776 443 123445443 23 1122346666654 3445666554 34444454
Q ss_pred eCCCCCcCcchhhhcC
Q 008562 525 HGDLGRTNPSIGSILG 540 (561)
Q Consensus 525 hGD~GRT~PSl~~iLg 540 (561)
+ .+++-|||.+|+.
T Consensus 83 -~-~~~~F~sl~eLV~ 96 (122)
T 2lnw_A 83 -T-EAKKFDSLLELVE 96 (122)
T ss_dssp -S-SSCCBSSHHHHHH
T ss_pred -C-CCCeECCHHHHHH
Confidence 2 2789999998865
Done!