Query 008563
Match_columns 561
No_of_seqs 292 out of 1629
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.1E-45 3.7E-50 392.0 39.6 419 97-541 7-444 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.5E-18 1.2E-22 180.4 20.9 207 99-330 235-447 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.2 13 0.00045 37.1 31.3 25 514-538 408-432 (451)
4 4hkr_A Calcium release-activat 33.9 2.5E+02 0.0085 24.8 12.0 71 374-444 56-134 (214)
5 2k1k_A Ephrin type-A receptor 27.2 71 0.0024 19.9 3.4 22 304-325 13-34 (38)
6 3o7q_A L-fucose-proton symport 23.7 4.9E+02 0.017 25.0 30.1 32 102-133 26-57 (438)
7 2ks1_B Epidermal growth factor 15.1 2.5E+02 0.0086 18.1 4.4 7 323-329 32-38 (44)
8 4aps_A DI-OR tripeptide H+ sym 14.5 8.3E+02 0.029 23.8 27.3 21 516-536 448-468 (491)
9 2jwa_A Receptor tyrosine-prote 11.3 3.4E+02 0.012 17.5 4.2 8 323-330 32-39 (44)
10 1nkz_B Light-harvesting protei 10.3 2.4E+02 0.0082 17.9 2.8 39 191-229 2-40 (41)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.1e-45 Score=392.02 Aligned_cols=419 Identities=19% Similarity=0.235 Sum_probs=384.5
Q ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCC
Q 008563 97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 176 (561)
Q Consensus 97 ~~~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~ 176 (561)
.++..|++++.++|.++++++..+.+++|+.+++|+|++++|+++++.++.++.. .+..|++.+..+.++|++|++|
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~-~~~~g~~~~~~~~is~~~g~~~-- 83 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMALVPVVAQLNGAGR-- 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHH-HHHHHHHHHHGGGCTTTTSSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC--
Confidence 4567899999999999999999999999999999999999999999999977666 4556899999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhH
Q 008563 177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 256 (561)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~ 256 (561)
+++.++.+++++.+.++++++.+++ +.+.++++.+++.+++ ..+.+..|+++++++.
T Consensus 84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~ 140 (460)
T 3mkt_A 84 --------------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAV 140 (460)
T ss_dssp --------------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHH
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence 7888889999999999999987765 6778899888887776 8889999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhHHHHHHhh-h---ccchhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008563 257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-F---KLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 332 (561)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~l~~lli~~-~---~~G~~gaa~a~~i~~~~~~~~~~~~~~~~~~~ 332 (561)
++..+....++++|+.||++.+++.++++.++|+++++++++. + ++|+.|+++++.+++++..++.+++++++.+.
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 220 (460)
T 3mkt_A 141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL 220 (460)
T ss_dssp HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999999999999999999986 3 79999999999999999999988888765432
Q ss_pred cC-------ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008563 333 SI-------PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 405 (561)
Q Consensus 333 ~~-------~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~ 405 (561)
.+ .++++..+|+++++++|.++..+..++.+.+++.+++++|++++++|++++++.+++.++..+++++..|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~ 300 (460)
T 3mkt_A 221 AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR 300 (460)
T ss_dssp CCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 13445568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHhHh
Q 008563 406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLH 485 (561)
Q Consensus 406 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l 485 (561)
+++++|++|.+++++..++++++++.++++.++++.++++++..+|++|+++.+.+..++++++++.++++++.+..+++
T Consensus 301 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 380 (460)
T 3mkt_A 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380 (460)
T ss_dssp HHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHH-HHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008563 486 YGVSDFSYAAYSMMAVG-AISSVFLLYAPRV-------FGLSAVWWGLTLFMSLRVAAGYFRLL 541 (561)
Q Consensus 486 ~a~g~~~~~~~~~~~~~-v~~~~l~~~l~~~-------~G~~G~~~a~~i~~~~~~~~~~~~~~ 541 (561)
++.||+|.+++.+.+.. ++++++.+++.+. +|+.|+|+++.+++.+..++..++++
T Consensus 381 ~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp GGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 7778877777666 99999999999999999988876663
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.79 E-value=3.5e-18 Score=180.40 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=190.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhccCCCC
Q 008563 99 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 178 (561)
Q Consensus 99 ~~~~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg~~~laa~~~~~~i~~~~~~~~~~gl~~~~~~~va~~~g~~~~~~~ 178 (561)
+..|++++.++|.+++++.+.+...+|+.+++++|++++|+++++..+.++.. .+..+++.+..+.+++.+|++|
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~---- 309 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQD---- 309 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSC----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC----
Confidence 34688999999999999999999999999999999999999999999999998 4555899999999999999998
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCccccHHHHHHHHHHHHhHHH
Q 008563 179 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 258 (561)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~yl~i~~~~~~~ 258 (561)
.++.++...+++.+...++++.++++..+++++..++..+++ +.+.+..++++.+++.++
T Consensus 310 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~~l~~~~~~~~~ 369 (460)
T 3mkt_A 310 ------------------TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV--VVALAMQLLLFAAIYQCM 369 (460)
T ss_dssp ------------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCST--THHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999987766 889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHHhHHHHHHhh----hc-cchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008563 259 VVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYY----FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRT 330 (561)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~v~i~l~~lli~~----~~-~G~~gaa~a~~i~~~~~~~~~~~~~~~~~ 330 (561)
..+.....+++++.||++.+++..++.. ++++++++++... ++ +|+.|+++++.+++.+..++..+.++|+.
T Consensus 370 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 370 DAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 9999999999986 56 99999999999999999888876665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.21 E-value=13 Score=37.14 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=13.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 008563 514 RVFGLSAVWWGLTLFMSLRVAAGYF 538 (561)
Q Consensus 514 ~~~G~~G~~~a~~i~~~~~~~~~~~ 538 (561)
...|....++...+..++..++.+.
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 4567666666655555555544443
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=33.91 E-value=2.5e+02 Score=24.80 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh--------hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008563 374 GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSF--------AKGDYNTVKEITHFALKTGLFTGVTLAVILGASF 444 (561)
Q Consensus 374 g~~~~aa~~i~~~i~~l~~~~~~al~~a~~p~vs~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (561)
.+.-+.+|++...+.-.+.++..-+++-..|-+-..- ...-++|.+.+....-.++.++++++-+.-....
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456888998888888888887778877777664432 2334667777777777777666665544444333
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.18 E-value=71 Score=19.91 Aligned_cols=22 Identities=0% Similarity=0.120 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 008563 304 VTGAAISTVGSQYMVTLLMIWY 325 (561)
Q Consensus 304 ~~gaa~a~~i~~~~~~~~~~~~ 325 (561)
+.|..++.+++..+...+.+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 4455555555555444444333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.66 E-value=4.9e+02 Score=24.96 Aligned_cols=32 Identities=3% Similarity=0.075 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 008563 102 LDLIMLSLPAIAGQAIEPMAQLMETAYIGRLG 133 (561)
Q Consensus 102 ~~i~~~a~p~~~~~~~~~~~~~i~~~~vg~lg 133 (561)
+.++...+-.++..+.......+-..+..++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 34444444444444444444444444444454
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.11 E-value=2.5e+02 Score=18.06 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 008563 323 IWYLNKR 329 (561)
Q Consensus 323 ~~~~~~~ 329 (561)
+++++|+
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=14.54 E-value=8.3e+02 Score=23.80 Aligned_cols=21 Identities=10% Similarity=-0.323 Sum_probs=9.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 008563 516 FGLSAVWWGLTLFMSLRVAAG 536 (561)
Q Consensus 516 ~G~~G~~~a~~i~~~~~~~~~ 536 (561)
.+....++.......+..++.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.32 E-value=3.4e+02 Score=17.48 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.5
Q ss_pred HHHHHhcc
Q 008563 323 IWYLNKRT 330 (561)
Q Consensus 323 ~~~~~~~~ 330 (561)
..+++|++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 34444443
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=10.30 E-value=2.4e+02 Score=17.88 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008563 191 GCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLF 229 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (561)
|--++|-++..+.+.+++..-..++++.=++.+...|++
T Consensus 2 gLT~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Done!