Query         008564
Match_columns 561
No_of_seqs    243 out of 2652
Neff          10.0
Searched_HMMs 13730
Date          Mon Mar 25 06:30:24 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008564.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008564hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2ij2a1 a.104.1.1 (A:3-455) Cy 100.0   2E-70 1.5E-74  568.5  40.6  440   66-552     2-451 (453)
  2 d1tqna_ a.104.1.1 (A:) Mammali 100.0 5.4E-70   4E-74  568.2  28.1  445   67-552    11-471 (472)
  3 d2ciba1 a.104.1.1 (A:5-449) Cy 100.0 1.2E-68 8.8E-73  553.8  31.2  436   66-551     2-445 (445)
  4 d1r9oa_ a.104.1.1 (A:) Mammali 100.0 2.1E-68 1.5E-72  555.1  31.3  452   64-552     2-467 (467)
  5 d3czha1 a.104.1.1 (A:40-502) V 100.0 6.3E-67 4.6E-71  542.8  33.4  448   67-551     1-463 (463)
  6 d1po5a_ a.104.1.1 (A:) Mammali 100.0   8E-66 5.8E-70  535.5  33.6  451   64-551     1-465 (465)
  7 d1izoa_ a.104.1.1 (A:) Cytochr 100.0 1.1E-59 7.7E-64  481.2  34.5  399   73-551     3-411 (411)
  8 d1n97a_ a.104.1.1 (A:) Cyp175a 100.0 3.7E-58 2.7E-62  465.0  22.6  369   87-548    16-384 (385)
  9 d1gwia_ a.104.1.1 (A:) Cyp154c 100.0 4.9E-51 3.6E-55  415.4  27.0  374   87-549     8-401 (403)
 10 d1odoa_ a.104.1.1 (A:) Cyp154a 100.0 3.5E-49 2.5E-53  401.7  33.3  374   92-548    11-400 (401)
 11 d1jfba_ a.104.1.1 (A:) Cytochr 100.0 1.9E-48 1.4E-52  395.9  33.7  376   87-547    10-399 (399)
 12 d1z8oa1 a.104.1.1 (A:3-404) Cy 100.0 4.5E-49 3.3E-53  401.0  29.0  370   87-547    10-400 (402)
 13 d1ueda_ a.104.1.1 (A:) p450 mo 100.0 1.8E-48 1.3E-52  396.2  31.5  370   87-547    19-403 (403)
 14 d1q5da_ a.104.1.1 (A:) Cytochr 100.0 1.6E-47 1.1E-51  389.4  23.9  377   88-549    10-400 (401)
 15 d1n40a_ a.104.1.1 (A:) Cyp121  100.0 5.7E-47 4.1E-51  382.2  25.9  366   89-547    15-395 (395)
 16 d1cpta_ a.104.1.1 (A:) Cytochr 100.0   6E-46 4.3E-50  380.9  29.7  376   94-549    29-427 (428)
 17 d1s1fa_ a.104.1.1 (A:) Cyp158a 100.0 1.8E-45 1.3E-49  373.8  26.9  365   95-548    22-398 (399)
 18 d1re9a_ a.104.1.1 (A:) Cytochr 100.0 7.7E-45 5.6E-49  368.8  28.7  370   87-551    24-400 (404)
 19 d1lfka_ a.104.1.1 (A:) p450 mo 100.0 1.6E-43 1.1E-47  358.6  26.2  359   99-546    18-393 (394)
 20 d1io7a_ a.104.1.1 (A:) Cyp119  100.0 3.5E-41 2.5E-45  337.8  28.2  349   95-548     4-365 (366)
 21 d1ue8a_ a.104.1.1 (A:) Cyp119  100.0 1.9E-41 1.4E-45  339.6  22.3  351   93-549     3-366 (367)
 22 d1mo6a2 d.48.1.1 (A:270-329) R  51.7     6.5 0.00047   25.0   3.2   24  370-393    37-60  (60)
 23 d2f9da1 d.58.7.1 (A:12-125) Pr  43.4      19  0.0014   25.9   5.4   56   67-129     3-64  (114)
 24 d1xp8a2 d.48.1.1 (A:283-341) R  40.4      14   0.001   23.3   3.4   24  369-392    35-58  (59)
 25 d1whxa_ d.58.7.1 (A:) Probable  38.4      30  0.0022   24.5   5.9   49   89-137    21-73  (111)
 26 d1mp9a2 d.129.1.1 (A:97-197) T  36.2     6.1 0.00044   28.3   1.3   63  465-529    35-100 (101)
 27 d1hd0a_ d.58.7.1 (A:) Heteroge  36.2      38  0.0028   22.0   5.6   43   90-132    11-62  (75)
 28 d1x0fa1 d.58.7.1 (A:183-257) N  30.7      52  0.0038   21.3   5.5   43   89-131    10-61  (75)
 29 d3begb1 d.58.7.1 (B:121-207) S  30.2      23  0.0017   23.9   3.8   40   91-130    13-54  (87)
 30 d1u94a2 d.48.1.1 (A:269-328) R  30.2      23  0.0017   22.3   3.2   21  371-391    38-58  (60)
 31 d1no8a_ d.58.7.1 (A:) Nuclear   29.5      52  0.0038   21.4   5.5   41   90-130    12-60  (78)
 32 d1wwha1 d.58.7.1 (A:169-249) N  27.9      59  0.0043   21.5   5.5   43   93-135    18-63  (81)
 33 d1l3ka1 d.58.7.1 (A:8-91) Nucl  27.3      30  0.0022   23.2   3.8   43   90-132    18-69  (84)
 34 d1jmta_ d.58.7.3 (A:) d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=100.00  E-value=2e-70  Score=568.54  Aligned_cols=440  Identities=25%  Similarity=0.443  Sum_probs=369.4

Q ss_pred             CCCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhH
Q 008564           66 TQSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSE  145 (561)
Q Consensus        66 ~~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~  145 (561)
                      ..|||.++|++|+    +..+..+.++..+.+|++||||||++++|+.++|+|+||+++++++.+....+..+.......
T Consensus         2 ~iPGP~~~p~lG~----l~~l~~~~~~~~~~~~~~kyG~if~~~~~~~~~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~   77 (453)
T d2ij2a1           2 EMPQPKTFGELKN----LPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVR   77 (453)
T ss_dssp             CCCCCCCCGGGTT----GGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTTEEECCCHHHHHHH
T ss_pred             CCccCCCcchhhC----HHHhCCCCHHHHHHHHHHHhCCEEEEEeCCceEEEECCHHHHHHHHhcCCcccccccHhHHHH
Confidence            4689999999999    666666788999999999999999999999999999999999999977655555555555566


Q ss_pred             hhcCCceec--cCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHh
Q 008564          146 FLFGSGFAI--AEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSV  223 (561)
Q Consensus       146 ~~~g~~l~~--~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~  223 (561)
                      .+.|.+++.  .+|+.|+++|+++.+.|+.+.++.+. +.+.++++.+++.|.+. ..++.+|+.+++..+++|+++.++
T Consensus        78 ~~~g~~~~~~~~~g~~wk~~Rk~l~~~fs~~~l~~~~-~~i~~~~~~li~~l~~~-~~~~~idl~~~~~~~~~~~i~~~~  155 (453)
T d2ij2a1          78 DFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH-AMMVDIAVQLVQKWERL-NADEHIEVPEDMTRLTLDTIGLCG  155 (453)
T ss_dssp             HHHTTSGGGSCTTSHHHHHHHHHHGGGGSTTTHHHHH-HHHHHHHHHHHHHHHTC-CTTCCEEHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcEEecCCChHHHHHHHHHHHHHhhhhhhhhhh-hhHHHHHHHHHHHhhhc-CCCCccchHHHHHHHhhhcchhcc
Confidence            677777765  47999999999999999999999998 89999999999999763 457789999999999999999999


Q ss_pred             hcccCCCCCC--CChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008564          224 FNYNFDSLTA--DSPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGE  301 (561)
Q Consensus       224 fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  301 (561)
                      ||.+++.+..  ..+.+..+...+.........+.+.     +.......+...+..+.++++++.+++++++.      
T Consensus       156 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~------  224 (453)
T d2ij2a1         156 FNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPD-----DPAYDENKRQFQEDIKVMNDLVDKIIADRKAS------  224 (453)
T ss_dssp             HSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC---CTT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             cccccchhhhccchHHHHhhhhccchhhhhhhhcccc-----cccchhhHHHHHHHHHHHHHHHHHHHhhhccc------
Confidence            9999876533  3455556555555444333222221     11112234455666777778887777766543      


Q ss_pred             ccCcccccCCCCchHHHHHHhccc-----CCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhh
Q 008564          302 RIDDEEYVNDSDPSILRFLLASRE-----EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLE  376 (561)
Q Consensus       302 ~~~~~~~~~~~~~~ll~~ll~~~~-----~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~  376 (561)
                              .+...|+++.++++.+     +++++++.++++.+++||+|||+++++|++++|++|               
T Consensus       225 --------~~~~~d~l~~ll~~~~~~~~~~ls~~ei~~~~~~~l~ag~~tta~~l~~~l~~L~~~---------------  281 (453)
T d2ij2a1         225 --------GEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKN---------------  281 (453)
T ss_dssp             --------CCCCSSHHHHHHHCCCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             --------cccccchhhhhhhhcccccCcchhhhHHHhhhccccccccccchhhhhcchhhhhcc---------------
Confidence                    2345678888886543     589999999999999999999999999999999999               


Q ss_pred             chhHHHHHHHHHHHHhCCCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccC
Q 008564          377 DCNSLMKAQEEIDRVLQGRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHH  456 (561)
Q Consensus       377 ~p~~~~klr~Ei~~~~~~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~  456 (561)
                       |++|+++++|++++.++...+.+++++||||+|||+|++|++|+++...+++..+++..+||.||||+.|+++.+++|+
T Consensus       282 -p~~~~~~~~e~~~~~~~~~~~~~~l~~~p~L~a~i~E~lR~~p~~~~~~r~~~~~~~~~~~~~ip~g~~v~~~~~~~~~  360 (453)
T d2ij2a1         282 -PHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHR  360 (453)
T ss_dssp             -HHHHHHHHHHHHHHCCSSSCCHHHHHTCHHHHHHHHHHHHHSCSSCEEEEEESSCEEETTTEEECTTCEEEEEHHHHTT
T ss_pred             -cccchhhhhhhhhhhccccCChhhhhcCCcchhhhhhhhcccccccccccccccccccCCcceeecccccccchhhccc
Confidence             9999999999999999888999999999999999999999999999988888888899999999999999999999999


Q ss_pred             CCcCC-CCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCCCccccccce
Q 008564          457 SSQVW-ERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPDQNINMTTGA  535 (561)
Q Consensus       457 d~~~~-~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~  535 (561)
                      ||++| +||++|+||||++.+.     .....|+|||+|+|+|+|++||.+|++++++.||++|+|++.++.++......
T Consensus       361 d~~~~~~dp~~F~PeRfl~~~~-----~~~~~~~pFG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~  435 (453)
T d2ij2a1         361 DKTIWGDDVEEFRPERFENPSA-----IPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETL  435 (453)
T ss_dssp             CHHHHCSCTTSCCGGGGSSGGG-----SCTTSCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHEEEECTTCCCCCEEESS
T ss_pred             ChhhcCCchhhcCccccCCCCC-----CCCCcccCCCCCCccChhHHHHHHHHHHHHHHHHHhCEEEeCCCCccCceeee
Confidence            99999 6899999999986532     23467999999999999999999999999999999999999988888877777


Q ss_pred             eeecCCCeeEEEEEecC
Q 008564          536 TIHTTNGLYMKLRQRQH  552 (561)
Q Consensus       536 ~~~~~~~~~v~~~~r~~  552 (561)
                      ++.|. +++|++++|..
T Consensus       436 ~~~p~-~~~v~~~~R~~  451 (453)
T d2ij2a1         436 TLKPE-GFVVKAKSKKI  451 (453)
T ss_dssp             SEEET-TCEEEEEECCC
T ss_pred             EEccC-CeEEEEEECCC
Confidence            87774 89999999963


No 2  
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.4e-70  Score=568.18  Aligned_cols=445  Identities=23%  Similarity=0.434  Sum_probs=344.8

Q ss_pred             CCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCcc-CCchhhHHhH
Q 008564           67 QSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKY-AKGLVSEVSE  145 (561)
Q Consensus        67 ~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~-~~~~~~~~~~  145 (561)
                      .|||+++|++|+    +..+ ..+++.++.+|++||||||++++|+.++|+|+||++++++|.++...+ ....... ..
T Consensus        11 iPGP~~~P~iG~----~~~~-~~~~~~~~~~~~~kyG~i~~~~l~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~-~~   84 (472)
T d1tqna_          11 IPGPTPLPFLGN----ILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFG-PV   84 (472)
T ss_dssp             CCCCCCBTTTBT----GGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCBCCCCS-CC
T ss_pred             CCCCCCcCceeE----HHHh-hCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHhcCCcccccCCcccc-cc
Confidence            588999999999    4444 456789999999999999999999999999999999999997665333 3222221 22


Q ss_pred             hhcCCceeccCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhc
Q 008564          146 FLFGSGFAIAEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFN  225 (561)
Q Consensus       146 ~~~g~~l~~~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG  225 (561)
                      .+.++++++++|+.|+.+|+++.+.|+...+..+. +.+++.++.+++.|.+....+..+|+.+++.++++|+++.++||
T Consensus        85 ~~~~~~i~~~~g~~~~~~R~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~dl~~~~~~~~~~v~~~~~~G  163 (472)
T d1tqna_          85 GFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMV-PIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG  163 (472)
T ss_dssp             GGGGGSTTTCCHHHHHHHHHHTTGGGSHHHHHTTH-HHHHHHHHHHHHHHHHHHHHSSCEEHHHHHHHHHHHHHHHTSSC
T ss_pred             cccCCceeccCcHHHHHhhhhcCccccchhhhccc-chhhhhhhcccccccccccccccchhhhhhhccchhhhhheecc
Confidence            34567889999999999999999999999999998 89999999999999987777889999999999999999999999


Q ss_pred             ccCCCCCCCC-hhHHHHHHHHHHHHHhccCcchhh-hHhhhhccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008564          226 YNFDSLTADS-PVIDAVYTALKEAELRSTDVLPYW-KVKALCKIVP--RQIKAEKAVTVIRKTVEELIIKCKEIVETEGE  301 (561)
Q Consensus       226 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~  301 (561)
                      .+++.++... +..........     ........ ....+..+.+  ...+.....+.+.+++...++++++...... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (472)
T d1tqna_         164 VNIDSLNNPQDPFVENTKKLLR-----FDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDT-  237 (472)
T ss_dssp             CCCCGGGCTTCHHHHHHTTCCC-----CCTTSHHHHHHHHCGGGHHHHHHTTCCSSCHHHHHHHHHHHHHHHTTTTTTC-
T ss_pred             cccccccccchhhhHHHHHHhh-----hhhccchhcccccccccccccccccccccchhhhHHHHHHHHHhhhcccccc-
Confidence            9998764332 22222111100     00000000 0001111111  1111112233455555555555544333221 


Q ss_pred             ccCcccccCCCCchHHHHHHhc--------ccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhh
Q 008564          302 RIDDEEYVNDSDPSILRFLLAS--------REEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNR  373 (561)
Q Consensus       302 ~~~~~~~~~~~~~~ll~~ll~~--------~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~  373 (561)
                              .....+..+.++..        ...++++++.++++.+++||+|||+++++|+|++|+.|            
T Consensus       238 --------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ei~~~~l~l~~Ag~~tta~~l~~~l~~L~~~------------  297 (472)
T d1tqna_         238 --------QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATH------------  297 (472)
T ss_dssp             --------SCCCCCHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             --------cccccchhhhhhhcccccccccccchhhhHHHhhhhhhhhcccccccccceeeccccccC------------
Confidence                    11122233333221        22589999999999999999999999999999999999            


Q ss_pred             hhhchhHHHHHHHHHHHHhCC-CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecc
Q 008564          374 LLEDCNSLMKAQEEIDRVLQG-RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVY  452 (561)
Q Consensus       374 ~~~~p~~~~klr~Ei~~~~~~-~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~  452 (561)
                          |++|+|+++||+++++. ..++.+++.++|||+|||+|+||++|+++. ++|.+.+|+.++||.||||+.|+++.+
T Consensus       298 ----Pe~~~klr~Ei~~~~~~~~~~~~~~l~~~~~l~a~i~E~lRl~p~~~~-~~r~~~~d~~~~g~~ipkGt~v~~~~~  372 (472)
T d1tqna_         298 ----PDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMR-LERVCKKDVEINGMFIPKGVVVMIPSY  372 (472)
T ss_dssp             ----HHHHHHHHHHHHHHSTTTCCCCHHHHHHCHHHHHHHHHHHHHCCTTCC-EEEECCSCEEETTEEECTTCEEEECHH
T ss_pred             ----ccccccccceeheeccccccchHHHhhccccccceeeeccccCCcccc-cccccccCccccCceeCCCCEEEEech
Confidence                99999999999999985 468889999999999999999999998875 567788899999999999999999999


Q ss_pred             cccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCCCcccc-
Q 008564          453 NIHHSSQVWERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPDQNINM-  531 (561)
Q Consensus       453 ~~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~-  531 (561)
                      ++|+||++|+||++|+||||++.+.   .......|+|||+|+|.|+|++||.+|++++++.||++|+|+++++.+.++ 
T Consensus       373 ~~~~d~~~~~dp~~F~PeRfl~~~~---~~~~~~~~~~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~  449 (472)
T d1tqna_         373 ALHRDPKYWTEPEKFLPERFSKKNK---DNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLK  449 (472)
T ss_dssp             HHHTCTTTSSSTTSCCGGGGSTTTG---GGCCTTTSCTTCCSTTSCTTHHHHHHHHHHHHHHHHTTEEEECCTTCCSSCC
T ss_pred             hhhcCchhCCCccccCccccCCCCc---ccCCCceecCCCCCCccChhHHHHHHHHHHHHHHHHHhCEEEeCCCCCCCce
Confidence            9999999999999999999996542   233566899999999999999999999999999999999999987765444 


Q ss_pred             -ccceeeecCCCeeEEEEEecC
Q 008564          532 -TTGATIHTTNGLYMKLRQRQH  552 (561)
Q Consensus       532 -~~~~~~~~~~~~~v~~~~r~~  552 (561)
                       ..+.++.|+.++.|++++|..
T Consensus       450 ~~~~~~~~p~~~~~~~~~~R~~  471 (472)
T d1tqna_         450 LSLGGLLQPEKPVVLKVESRDG  471 (472)
T ss_dssp             BCSSSSCCBSSCCEEEEEETTC
T ss_pred             eccceEEeeCCCEEEEEEECCC
Confidence             455678899999999999974


No 3  
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=1.2e-68  Score=553.84  Aligned_cols=436  Identities=17%  Similarity=0.281  Sum_probs=335.7

Q ss_pred             CCCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhH
Q 008564           66 TQSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSE  145 (561)
Q Consensus        66 ~~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~  145 (561)
                      .||+|.++|++|+    +..+ ..+++.++.++++||||||+++++++++++|+||+++++++.++...+.++..+....
T Consensus         2 lP~~p~~~P~iG~----~~~f-~~d~~~f~~~~~~kyG~if~~~~~~~~~v~v~~p~~v~~i~~~~~~~~~~~~~~~~~~   76 (445)
T d2ciba1           2 LPRVSGGHDEHGH----LEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMT   76 (445)
T ss_dssp             CCBCSCCCBTTBT----HHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGH
T ss_pred             CCCCCCCcCcCcC----HHHH-hHCHHHHHHHHHHHHCCEEEEEECCceEEEEcCHHHHHHHHhCCcccccCCccchhhH
Confidence            4889999999999    5554 4678899999999999999999999999999999999999988776677766666677


Q ss_pred             hhcCCceeccCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhc
Q 008564          146 FLFGSGFAIAEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFN  225 (561)
Q Consensus       146 ~~~g~~l~~~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG  225 (561)
                      .++|.++.+ ++..|+.+|+++.+.|+...++.+. +.++++++++++.|.    .++++|+.++++.+++++++.++||
T Consensus        77 ~~~g~g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~~~~~~~l~----~~~~vdl~~~~~~~~~~~~~~~~fG  150 (445)
T d2ciba1          77 PIFGEGVVF-DASPERRKEMLHNAALRGEQMKGHA-ATIEDQVRRMIADWG----EAGEIDLLDFFAELTIYTSSACLIG  150 (445)
T ss_dssp             HHHC---------------------CCHHHHHHHH-HHHHHHHHHHHTTCC----SEEEEEHHHHHHHHHHHHHHHHHTC
T ss_pred             hhcCCceee-cCchHHHHHHHhccccCccccccch-HHHHHHHHHhhhhcc----cCCCcchHHhhhhhcceeeeecccc
Confidence            778888765 5677888999999999999999998 888888888887764    4668999999999999999999999


Q ss_pred             ccCCCCCCCChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 008564          226 YNFDSLTADSPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDD  305 (561)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~  305 (561)
                      .++...  .++.+..+..   .+.. ....+... .+++  ..+..++..++.+.+.+++.+.++++++....+      
T Consensus       151 ~~~~~~--~~~~~~~~~~---~~~~-~~~~~~~~-~~~l--~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~------  215 (445)
T d2ciba1         151 KKFRDQ--LDGRFAKLYH---ELER-GTDPLAYV-DPYL--PIESFRRRDEARNGLVALVADIMNGRIANPPTD------  215 (445)
T ss_dssp             HHHHTT--CCHHHHHHHH---HHHT-TCCGGGGT-CTTC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             ccccch--hhhHHHHHHH---Hhhh-hhhhhccc-cchh--hhHHHHHHHHHHHHHHHHHHHHHhhhccccccc------
Confidence            887531  2233222222   2221 11111110 0111  123456667788888888888888776544332      


Q ss_pred             ccccCCCCchHHHHHHhccc-----CCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhH
Q 008564          306 EEYVNDSDPSILRFLLASRE-----EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNS  380 (561)
Q Consensus       306 ~~~~~~~~~~ll~~ll~~~~-----~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~  380 (561)
                           ....|+++.|++..+     .++++++.++++.+++||+|||+++++|++++|++|                |++
T Consensus       216 -----~~~~dll~~ll~~~~~~~~~~ls~~ei~~~~~~ll~ag~~tt~~~l~~~l~~L~~~----------------p~~  274 (445)
T d2ciba1         216 -----KSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRH----------------RDA  274 (445)
T ss_dssp             -------CCCHHHHHHHCBCTTSSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHH
T ss_pred             -----ccccchhhhhhccccccccccCCcchhhhhhhhhhhhccccchhhccccccccccc----------------ccc
Confidence                 234579999987643     479999999999999999999999999999999999                999


Q ss_pred             HHHHHHHHHHHhCC-CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCc
Q 008564          381 LMKAQEEIDRVLQG-RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQ  459 (561)
Q Consensus       381 ~~klr~Ei~~~~~~-~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~  459 (561)
                      |+|+++||+++++. +.++++++.+||||+|||+|++|++|+++... |.+.+|+.++||.||||+.|+++.+++|+||+
T Consensus       275 ~~~lr~Ei~~~~~~~~~~~~~~l~~lp~L~a~i~E~lRl~p~~~~~~-~~~~~~~~~~~~~ip~g~~v~~~~~~~~~d~~  353 (445)
T d2ciba1         275 YAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILM-RVAKGEFEVQGHRIHEGDLVAASPAISNRIPE  353 (445)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHTTSCCHHHHHHHHHHHHHSCSCCCEE-EEECSCEEETTEEECTTCEEEECHHHHTTCTT
T ss_pred             cccccccccccccccccchhhhcccchhhccccccccccccccceec-cccccccccceeeccccccccccccccccCcc
Confidence            99999999999974 56899999999999999999999999987755 56778888899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCCCc-cccc-cceee
Q 008564          460 VWERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPDQN-INMT-TGATI  537 (561)
Q Consensus       460 ~~~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~-~~~~-~~~~~  537 (561)
                      +|+||++|+||||++.+.  +.......|+|||+|+|.|+|++||..|+++++|.|+++|+||++++.+ .... ...+.
T Consensus       354 ~~~dp~~F~PeRf~~~~~--~~~~~~~~~~pFG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~  431 (445)
T d2ciba1         354 DFPDPHDFVPARYEQPRQ--EDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVV  431 (445)
T ss_dssp             TSSSTTSCCGGGGSTTTC--HHHHCTTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHEEEEESSCGGGCCEECSSSSC
T ss_pred             cCCChhhCCcccccCccc--cccCCCCcccCCCCCCccChhHHHHHHHHHHHHHHHHHhCEEEECCCCCccccccceEEE
Confidence            999999999999985432  1223456799999999999999999999999999999999999986543 2222 34566


Q ss_pred             ecCCCeeEEEEEec
Q 008564          538 HTTNGLYMKLRQRQ  551 (561)
Q Consensus       538 ~~~~~~~v~~~~r~  551 (561)
                      .++.++.|++++|.
T Consensus       432 ~~~~~~~v~~~~Rs  445 (445)
T d2ciba1         432 QLAQPAAVRYRRRT  445 (445)
T ss_dssp             EECSCCEEEEEEC-
T ss_pred             ccCCCEEEEEEeCc
Confidence            78889999999994


No 4  
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.1e-68  Score=555.10  Aligned_cols=452  Identities=23%  Similarity=0.290  Sum_probs=335.4

Q ss_pred             ccCCCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHH
Q 008564           64 TITQSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEV  143 (561)
Q Consensus        64 ~~~~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~  143 (561)
                      +++||||+++|++|+++    .+...+++..+.+|+++|||||++++|++++|+|+||+++++|+.+++..|.++.....
T Consensus         2 ~~lPPGP~~~P~lG~~~----~l~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dpe~i~~il~~~~~~f~~r~~~~~   77 (467)
T d1r9oa_           2 GKLPPGPTPLPVIGNIL----QIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPL   77 (467)
T ss_dssp             CBCCCCSSSCC-----C----CBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSC
T ss_pred             CCCCcCCCCCCccccHH----HhCCcCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCCcccCCCCcchh
Confidence            46799999999999944    44456788999999999999999999999999999999999999887767765543332


Q ss_pred             h-HhhcCCceeccCCchhhhhhcccCcccchHhHHH-HHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHH
Q 008564          144 S-EFLFGSGFAIAEGPLWMGRRRAVAPSLHKKYLSV-IVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGL  221 (561)
Q Consensus       144 ~-~~~~g~~l~~~~g~~w~~~Rr~l~~~f~~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~  221 (561)
                      . ....|.++++++|+.|+.+|+.+.+.|+...+.. .....+..........+..  ..+.++|+..++..+++++++.
T Consensus        78 ~~~~~~g~~l~~~~g~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~i~~  155 (467)
T d1r9oa_          78 AERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRK--TKASPCDPTFILGCAPCNVICS  155 (467)
T ss_dssp             CCTTTCTTSSTTCCHHHHHHHHHHHHHHHTTSSSCSSCHHHHHHHHHHHHHHHHHT--TTTSCBCTHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeeCCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHh--hccccccHHHHHHHHHhhhhhh
Confidence            2 3345788999999999999999988886543321 1224445555555555543  4567899999999999999999


Q ss_pred             HhhcccCCCCCCCChhHHHHHHHHHHHHH-hccCc--chhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008564          222 SVFNYNFDSLTADSPVIDAVYTALKEAEL-RSTDV--LPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVET  298 (561)
Q Consensus       222 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  298 (561)
                      +++|.++...+   .....+......... .....  +.....+....+........+....+.+++.+.++++.+....
T Consensus       156 ~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  232 (467)
T d1r9oa_         156 IIFHKRFDYKD---QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDM  232 (467)
T ss_dssp             HHHSCCCCTTC---HHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             hcccccchhhh---hhHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999987532   222222111111111 11111  1111122222223344555666777777777777776543222


Q ss_pred             hccccCcccccCCCCchHHHHHHhcc----cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhh
Q 008564          299 EGERIDDEEYVNDSDPSILRFLLASR----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRL  374 (561)
Q Consensus       299 ~~~~~~~~~~~~~~~~~ll~~ll~~~----~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~  374 (561)
                      +..        .+....+...+....    ..++++++.++++++++||+|||+++++|++++|++|             
T Consensus       233 ~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Ag~dTTa~~l~~~l~~L~~~-------------  291 (467)
T d1r9oa_         233 NNP--------QDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKH-------------  291 (467)
T ss_dssp             TCC--------CSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             ccc--------hhhhhhhhhhhhhhhccCCcccchhHHHHHHHHHHHcccccchhHHHHHHHHhhcC-------------
Confidence            210        010111222222211    2578899999999999999999999999999999999             


Q ss_pred             hhchhHHHHHHHHHHHHhCC-CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEeccc
Q 008564          375 LEDCNSLMKAQEEIDRVLQG-RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYN  453 (561)
Q Consensus       375 ~~~p~~~~klr~Ei~~~~~~-~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~  453 (561)
                         |++|+|+++|++++++. ..++.+++.+||||+|||+|+|||+|+++...+++..+|+.++||.||+|+.|+++.++
T Consensus       292 ---p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l~yL~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ip~gt~v~~~~~~  368 (467)
T d1r9oa_         292 ---PEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTS  368 (467)
T ss_dssp             ---HHHHHHHHHHHHHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHTSSTTCSCEECSSCEEETTEEECTTCEEEECSHH
T ss_pred             ---chHHHHHHhhhhhhcCCCCCCcHHHhhhhhhhhhhccccccccccCCcccccccccccccceeEEecCCccccchhh
Confidence               99999999999999985 46899999999999999999999999999998888889999999999999999999999


Q ss_pred             ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCC-Cccccc
Q 008564          454 IHHSSQVWERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPD-QNINMT  532 (561)
Q Consensus       454 ~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~-~~~~~~  532 (561)
                      +|||+++|+||++|+||||++++.   .......|+|||+|+|.|+|++||.+|+++++|.||++|+||++.+ +.++++
T Consensus       369 ~~~d~~~~~dp~~F~PeRfl~~~~---~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~la~ll~~f~~e~~~~~~~~~~~  445 (467)
T d1r9oa_         369 VLHDNKEFPNPEMFDPHHFLDEGG---NFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTT  445 (467)
T ss_dssp             HHTCTTTSSSTTSCCGGGGBCTTS---CBCCCTTCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHEEEEESSCGGGCCCC
T ss_pred             hcCCcccCcCcceeCccccCCCCC---CcCCCCCcccCCCCCcCChHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCCc
Confidence            999999999999999999996642   2334567999999999999999999999999999999999998743 333332


Q ss_pred             ---cceeeecCCCeeEEEEEecC
Q 008564          533 ---TGATIHTTNGLYMKLRQRQH  552 (561)
Q Consensus       533 ---~~~~~~~~~~~~v~~~~r~~  552 (561)
                         .+++..| ..+.|+++||.+
T Consensus       446 ~~~~~~~~~p-~~~~~~~~Pr~~  467 (467)
T d1r9oa_         446 PVVNGFASVP-PFYQLCFIPIHH  467 (467)
T ss_dssp             CBCCSSSCBC-CCCCEEEEECCC
T ss_pred             cccCcccccC-CCceEEEEecCC
Confidence               2345455 479999999974


No 5  
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.3e-67  Score=542.78  Aligned_cols=448  Identities=19%  Similarity=0.287  Sum_probs=335.2

Q ss_pred             CCCCCCCCccCCccccHHhhhc--ccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHHh
Q 008564           67 QSDESNIPVASAKLDDVTDLLG--GALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVS  144 (561)
Q Consensus        67 ~pgp~~lP~ig~~~~~~~~~~~--~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~  144 (561)
                      ||||+++|++|+    ++++..  ..++..+.++++||||||++++|++++++|+||++++++|.+++..|.+++.....
T Consensus         1 ~PGP~~~P~iG~----~~~~~~~~~~~~~~~~~~~~kyG~if~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~   76 (463)
T d3czha1           1 PPGPPGLPFIGN----IYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF   76 (463)
T ss_dssp             CCCCCCBTTTBH----HHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred             CcCCCCcCcccc----HHHhhCCCCcHHHHHHHHHHHhCCEEEEEECCceEEEECCHHHHHHHHHhCccccCCCCchhhh
Confidence            799999999999    444433  34688999999999999999999999999999999999998877777765433332


Q ss_pred             -HhhcCCc-eeccCCchhhhhhcccCcccchHhHH--HHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHH
Q 008564          145 -EFLFGSG-FAIAEGPLWMGRRRAVAPSLHKKYLS--VIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIG  220 (561)
Q Consensus       145 -~~~~g~~-l~~~~g~~w~~~Rr~l~~~f~~~~l~--~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~  220 (561)
                       ....+.+ +...+|+.|+.+|+.+...+......  .+. ..+....+.+.+....  ..+.++|+.+++..+++|+++
T Consensus        77 ~~~~~~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~i~~  153 (463)
T d3czha1          77 MKMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFE-SKILEETKFFNDAIET--YKGRPFDFKQLITNAVSNITN  153 (463)
T ss_dssp             HHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHTTTTSTTHH-HHHHHHHHHHHHHHHT--TTTCCBCCHHHHHHHHHHHHH
T ss_pred             HhhcCCCCceeCCCChHHHHHHHHhhhhhhccchhHHHHH-HHHHHHHHHHHHHhhh--cCCCceehHHHHHHHHHHHHh
Confidence             2233344 44557999999999887765543322  122 3444444444444432  456789999999999999999


Q ss_pred             HHhhcccCCCCCCCChhHHHHHHHHHHHHHhccC-cchhhhHhhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008564          221 LSVFNYNFDSLTADSPVIDAVYTALKEAELRSTD-VLPYWKVKALCKI-VPRQIKAEKAVTVIRKTVEELIIKCKEIVET  298 (561)
Q Consensus       221 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  298 (561)
                      .++||..++..+.  +.................. .+.....+++... .....+..+..+.+.+++.+.++.+++..+.
T Consensus       154 ~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (463)
T d3czha1         154 LIIFGERFTYEDT--DFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKP  231 (463)
T ss_dssp             HHHHSSCCCTTCH--HHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             hhccCcccCccch--hhhhHHHHhhhhhhhhcccchhccccccchhhccchHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            9999999876321  1111111111111111110 1111122333222 2234555666777777777777665433211


Q ss_pred             hccccCcccccCCCCchHHHHHHhcc----cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhh
Q 008564          299 EGERIDDEEYVNDSDPSILRFLLASR----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRL  374 (561)
Q Consensus       299 ~~~~~~~~~~~~~~~~~ll~~ll~~~----~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~  374 (561)
                      ..        ..+....+.+.+.+..    .+++++++.+++..+++||+|||+++++|+|++|++|             
T Consensus       232 ~~--------~~~~~~~~~~~~~~~~~~~~~~~s~~~i~~~~~~~l~ag~~tt~~~l~~~l~~L~~~-------------  290 (463)
T d3czha1         232 QL--------PQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALY-------------  290 (463)
T ss_dssp             TC--------CSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             cc--------ccchhhhhhhhhhhhcccccchhHHHHHHHHHHHHHhhhhccchhhhhhHHHhhccC-------------
Confidence            10        0111223444444432    3689999999999999999999999999999999999             


Q ss_pred             hhchhHHHHHHHHHHHHhCC-CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEeccc
Q 008564          375 LEDCNSLMKAQEEIDRVLQG-RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYN  453 (561)
Q Consensus       375 ~~~p~~~~klr~Ei~~~~~~-~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~  453 (561)
                         |++|+|+++||+.+++. +.++++++++||||+|||+||+|++|+++...+|.+.+|+.++||.||||+.|+++.++
T Consensus       291 ---P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lp~l~a~~~Et~Rl~~~~~~~~~r~~~~~~~~~g~~ipkG~~v~~~~~~  367 (463)
T d3czha1         291 ---PNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYS  367 (463)
T ss_dssp             ---HHHHHHHHHHHHHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCSCEECSSCEEETTEEECTTCEEEEEHHH
T ss_pred             ---cHHHHHHHHHHHhhcCCCCCCCHHHHHhhhhcccccceeeeeeccccccceecccCCcccCCcEECCCCcccCcHHH
Confidence               99999999999999975 56999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCCCcccc--
Q 008564          454 IHHSSQVWERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPDQNINM--  531 (561)
Q Consensus       454 ~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~--  531 (561)
                      +|+||++|+||++|+||||++++.   .......|+|||+|+|.|+|++||++|+++++|.||++|+|+++++..+++  
T Consensus       368 ~~~d~~~~~dp~~F~PeRfl~~~~---~~~~~~~~~~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~  444 (463)
T d3czha1         368 VHFDEKYWRDPEVFHPERFLDSSG---YFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKP  444 (463)
T ss_dssp             HHTCTTTCSSTTSCCGGGGBCTTS---CBCCCTTCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECGGGCCCCCCC
T ss_pred             hhCCcccCCChhhcCccccCCCcc---ccCCCCceeCCCCCCcCCchHHHHHHHHHHHHHHHHHhcEEEeCCCCCCCcee
Confidence            999999999999999999996642   233456899999999999999999999999999999999999986664443  


Q ss_pred             ccceeeecCCCeeEEEEEec
Q 008564          532 TTGATIHTTNGLYMKLRQRQ  551 (561)
Q Consensus       532 ~~~~~~~~~~~~~v~~~~r~  551 (561)
                      ..+.++.|+ ++.|++++|.
T Consensus       445 ~~~~~~~p~-~~~v~~~~R~  463 (463)
T d3czha1         445 RLGMTLQPQ-PYLICAERRH  463 (463)
T ss_dssp             CSSSSCCCC-CCCBEEEECC
T ss_pred             ccCeEEecc-CcEEEEEeCc
Confidence            345566665 7899999994


No 6  
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00  E-value=8e-66  Score=535.53  Aligned_cols=451  Identities=20%  Similarity=0.271  Sum_probs=337.0

Q ss_pred             ccCCCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHH
Q 008564           64 TITQSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEV  143 (561)
Q Consensus        64 ~~~~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~  143 (561)
                      |+.||||+++|++|+    +.++..++++..+.+++++|||||++++++.++|+|+||+++++||.+++..|.++.....
T Consensus         1 ~~~pPgP~~~P~lG~----~~~~~~~~~~~~~~~~~~kyG~vf~~~~~~~~~vvv~~p~~i~~il~~~~~~f~~~~~~~~   76 (465)
T d1po5a_           1 GKLPPGPSPLPVLGN----LLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAV   76 (465)
T ss_dssp             CCCCCCSCCBTTTBT----GGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGG
T ss_pred             CCCCCCCCCcCcccc----HHHhcCcCHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCccccCCCccchh
Confidence            367999999999999    5566667778899999999999999999999999999999999999877767776655554


Q ss_pred             hHhhc-CCceeccCCchhhhhhcccCcccchHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHH
Q 008564          144 SEFLF-GSGFAIAEGPLWMGRRRAVAPSLHKKYLS-VIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGL  221 (561)
Q Consensus       144 ~~~~~-g~~l~~~~g~~w~~~Rr~l~~~f~~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~  221 (561)
                      ...++ |.++++.+|+.|+.+|+.+.+.+...... ......+......+......  ..+..+|+.+++..+++++++.
T Consensus        77 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~i~~  154 (465)
T d1po5a_          77 VDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRK--SKGALLDNTLLFHSITSNIICS  154 (465)
T ss_dssp             GCSCCSSCCCCCSSHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--TTTCCBCCHHHHHHHHHHHHHH
T ss_pred             hhhccCCCceeecCchHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhc--cCCCcccHHHHHHHHHHHHHHH
Confidence            44443 67888999999999999998877543221 11214444444444443332  4567889999999999999999


Q ss_pred             HhhcccCCCCCCCChhHHHHHHHHHHHHHhccCcch---hhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008564          222 SVFNYNFDSLTADSPVIDAVYTALKEAELRSTDVLP---YWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVET  298 (561)
Q Consensus       222 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~  298 (561)
                      ++||.++...   .......................   ....+.+..+.....+..+..+.+.++..+.++++.+..+.
T Consensus       155 ~~fG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (465)
T d1po5a_         155 IVFGKRFDYK---DPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDP  231 (465)
T ss_dssp             HHHSSCCCTT---CHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             HHcCCccccc---ccchhhhhhhhhhhhcccccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999887542   22222222221111111111111   01111222222334555666777777777777766543222


Q ss_pred             hccccCcccccCCCCchHHHHHHhcc----cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhh
Q 008564          299 EGERIDDEEYVNDSDPSILRFLLASR----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRL  374 (561)
Q Consensus       299 ~~~~~~~~~~~~~~~~~ll~~ll~~~----~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~  374 (561)
                      ...        .+........+....    .+++++++.++++++++||+|||+++++|++++|++|             
T Consensus       232 ~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~Ag~~tta~~l~~~l~~l~~~-------------  290 (465)
T d1po5a_         232 SNP--------RDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKY-------------  290 (465)
T ss_dssp             TSC--------CSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             ccc--------cchhhhHHHHhhhcccccccchhHHHHHHHHHHHHhhccccchhhhHHHHHHHhhh-------------
Confidence            110        000011111111111    1377899999999999999999999999999999999             


Q ss_pred             hhchhHHHHHHHHHHHHhCCC-CCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEeccc
Q 008564          375 LEDCNSLMKAQEEIDRVLQGR-SPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYN  453 (561)
Q Consensus       375 ~~~p~~~~klr~Ei~~~~~~~-~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~  453 (561)
                         |++|+|+++||+++.+++ .++.+++++||||+|||+|||||+|+++...+|+..+|+.++||.||||+.|+++.++
T Consensus       291 ---p~~~~kl~~ei~~~~~~~~~~~~~~~~~lp~l~avi~EtlRl~~~~~~~~~~~~~~d~~~~~~~ipkGt~v~~~~~~  367 (465)
T d1po5a_         291 ---PHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSS  367 (465)
T ss_dssp             ---HHHHHHHHHHHHHHTCSSSCCCGGGGGGCHHHHHHHHHHHHHHCSSTTCCCEECSSCEEETTEEECTTCEEEECHHH
T ss_pred             ---hhHHHHHHHHHHHHcCcccCcchhhhhhceeeecccccccccccccccccceeeeccceeeEEEecCCCEEEEeeec
Confidence               999999999999999864 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecC-CCccccc
Q 008564          454 IHHSSQVWERAEEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVP-DQNINMT  532 (561)
Q Consensus       454 ~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~-~~~~~~~  532 (561)
                      +||||++|+||++|+||||++.+.   .......|+|||+|+|.|+|++||++|+++++|.||++|+||++. +++++++
T Consensus       368 ~~~d~~~~~dp~~F~PeRfl~~~~---~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~~a~ll~~f~~~~~~~~~~~~~~  444 (465)
T d1po5a_         368 ALHDPRYFETPNTFNPGHFLDANG---ALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLT  444 (465)
T ss_dssp             HHTCTTTCSSTTSCCGGGGBCTTS---CBCCCTTCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECSSCGGGCCCC
T ss_pred             cccccccCCCcCccCccccCCCCc---CcCCCCCcCCCCCCCcCCchHHHHHHHHHHHHHHHHHhCEEEeCCCCCCCCCc
Confidence            999999999999999999996542   223456899999999999999999999999999999999999853 4445543


Q ss_pred             ---cceeeecCCCeeEEEEEec
Q 008564          533 ---TGATIHTTNGLYMKLRQRQ  551 (561)
Q Consensus       533 ---~~~~~~~~~~~~v~~~~r~  551 (561)
                         .+.+..| .++.|+|++|.
T Consensus       445 ~~~~~~~~~p-~~~~~~~~~R~  465 (465)
T d1po5a_         445 PRESGVGNVP-PSYQIRFLARH  465 (465)
T ss_dssp             CCSTTSSCCC-CCCCBEEEECC
T ss_pred             cccccceecC-CccEEEEEeCc
Confidence               2334444 57999999994


No 7  
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=1.1e-59  Score=481.22  Aligned_cols=399  Identities=15%  Similarity=0.212  Sum_probs=309.2

Q ss_pred             CCccCCccccHHhhhcccchHHHHHHHHHhCC-eEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhHhhcCC-
Q 008564           73 IPVASAKLDDVTDLLGGALFLPLFKWMNVYGP-IYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSEFLFGS-  150 (561)
Q Consensus        73 lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGp-V~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~~~~g~-  150 (561)
                      .|.+|++++.+     ++++.++.++++|||+ ||+++++++++|+|+||+++++++.+....+...........++|. 
T Consensus         3 ~~~~~~~l~~~-----~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~   77 (411)
T d1izoa_           3 DKSLDNSLTLL-----KEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVN   77 (411)
T ss_dssp             CCCTTHHHHHH-----HHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTT
T ss_pred             CCChhhHHHHH-----HHHHHHHHHHHHHHCCCeEEEEECCccEEEEECHHHHHHHHcCCCCeecCCCcHHHHHhhcCCC
Confidence            48899955433     3457889999999995 9999999999999999999999997654334333333444556664 


Q ss_pred             ceeccCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCC
Q 008564          151 GFAIAEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDS  230 (561)
Q Consensus       151 ~l~~~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~  230 (561)
                      ++...+|+.|+.+|+++.+.|+...++.+. +.+.+.++.++++|.    .+..+|+.+.+..+++++++..+++ ... 
T Consensus        78 ~~~~~dg~~h~~~R~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~----~~~~v~l~~~~~~l~~~v~~~~~g~-~~~-  150 (411)
T d1izoa_          78 AIQGMDGSAHIHRKMLFLSLMTPPHQKRLA-ELMTEEWKAAVTRWE----KADEVVLFEEAKEILCRVACYWAGV-PLK-  150 (411)
T ss_dssp             CGGGCCHHHHHHHHHHHHHTSSHHHHHHHH-HHHHHHHHHHHHHHT----TSSEEEHHHHHHHHHHHHHHHHHTC-CCC-
T ss_pred             cccCCCcHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHHhh----ccCchhHHHHHHHHHHHHHHHHcCC-Ccc-
Confidence            577889999999999999999999999998 888889988888874    3568999999999999998876543 332 


Q ss_pred             CCCCChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccC
Q 008564          231 LTADSPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVN  310 (561)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  310 (561)
                         +++. ..+...+..+......            ......+..++.+.+.+++.++++++++....            
T Consensus       151 ---~~~~-~~~~~~~~~~~~~~~~------------~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~------------  202 (411)
T d1izoa_         151 ---ETEV-KERADDFIDMVDAFGA------------VGPRHWKGRRARPRAEEWIEVMIEDARAGLLK------------  202 (411)
T ss_dssp             ---TTTH-HHHHHHHHHHHHHTTC------------CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC------------
T ss_pred             ---HHHH-HHHHHHHHHHHHHhhh------------cccchHHHHHHHHHHHHHHHHHHHHhhccccc------------
Confidence               2222 2222222222111111            11122344566678888888888877643221            


Q ss_pred             CCCchHHHHHHhccc---CCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHH
Q 008564          311 DSDPSILRFLLASRE---EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEE  387 (561)
Q Consensus       311 ~~~~~ll~~ll~~~~---~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~E  387 (561)
                      ....+.+..++...+   +..++++..+.+.+++||+|||+++++|++++|++|                |++|+|+++|
T Consensus       203 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~tts~~l~~~l~~L~~~----------------P~vq~kl~~e  266 (411)
T d1izoa_         203 TTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEH----------------PKYKEWLRSG  266 (411)
T ss_dssp             CCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS----------------THHHHHHHTC
T ss_pred             CccccHHHHHHHHhHhcCCccccchhhhhhhhhhcccccchHHHHHHHHHHHhc----------------cccccccccc
Confidence            223345555554433   356677778888889999999999999999999999                9999999986


Q ss_pred             HHHHhCCCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCC
Q 008564          388 IDRVLQGRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEF  467 (561)
Q Consensus       388 i~~~~~~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F  467 (561)
                                      ++|||+|||+|++|++|++|. ..|.+.+|++++||.||||+.|+++.+++||||++|+||++|
T Consensus       267 ----------------~~~~l~a~i~E~lRl~p~~~~-~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp~~~~~p~~F  329 (411)
T d1izoa_         267 ----------------NSREREMFVQEVRRYYPFGPF-LGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEF  329 (411)
T ss_dssp             ----------------CHHHHHHHHHHHHHHSCCCCE-EEEEECSCEEETTEEECTTCEEEEEHHHHHTCTTTSSSTTSC
T ss_pred             ----------------ccchHHHHHHHHHHhhhcccc-cccccccccccceeecccccchhhhhhhhhcccccCCCcccc
Confidence                            789999999999999999987 557778889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccCCC----CCCChhHHHHHHHHHHHHHHHHhcceEEecCCCccccc-cceeeecCCC
Q 008564          468 LPERFDLEGPMPNESNTDFRFIPFSGG----PRKCVGDQFALLEAIVALAILLQNMNFELVPDQNINMT-TGATIHTTNG  542 (561)
Q Consensus       468 ~P~R~l~~~~~~~~~~~~~~~~~Fg~G----~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~~-~~~~~~~~~~  542 (561)
                      +||||++..      .....|+|||+|    +|+|+|++||.+|+++++|.||++|+|++.++. +.+. ......|+.|
T Consensus       330 ~PeR~~~~~------~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~-~~~~~~~~~~~p~~~  402 (411)
T d1izoa_         330 RPERFAERE------ENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQS-LHYSLARMPSLPESG  402 (411)
T ss_dssp             CGGGGTTCC------CCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCC-CCCCSSSSSCCCTTC
T ss_pred             CccccCCCC------CCCCccCCCCCCCCCCCeEChhHHHHHHHHHHHHHHHHHhcEEEcCCCC-cCCCccccCCccCCC
Confidence            999998653      234579999999    799999999999999999999999999986543 3333 2345678889


Q ss_pred             eeEEEEEec
Q 008564          543 LYMKLRQRQ  551 (561)
Q Consensus       543 ~~v~~~~r~  551 (561)
                      +.|++++|.
T Consensus       403 ~~~~~~~Rr  411 (411)
T d1izoa_         403 FVMSGIRRK  411 (411)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEeCc
Confidence            999999984


No 8  
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3.7e-58  Score=465.05  Aligned_cols=369  Identities=22%  Similarity=0.362  Sum_probs=287.9

Q ss_pred             hcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhHhhcCCceeccCCchhhhhhcc
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSEFLFGSGFAIAEGPLWMGRRRA  166 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~w~~~Rr~  166 (561)
                      +..+++.++.+|.++||+|| +++++.++++|+||+++++|+.+++..+. ...+..+..++|+|+++++|+.|+++|++
T Consensus        16 ~~~dp~~~~~~~~~kyg~v~-~~~~~~p~v~v~dp~~v~~il~~~~~~~~-~~~~~~~~~~~G~gl~~~~g~~wk~~R~~   93 (385)
T d1n97a_          16 LQQDPLAVLLAWGRAHPRLF-LPLPRFPLALIFDPEGVEGALLAEGTTKA-TFQYRALSRLTGRGLLTDWGESWKEARKA   93 (385)
T ss_dssp             HHHCHHHHHHHHHHHCSEEE-ECCTTCCEEEECSHHHHHHHHHCTTEECC-SHHHHHHHHHHCSSTTTCCHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHHCCCEE-EEeCCEEEEEECCHHHHHHHHcCCCCCcC-CccHHHHHHHhCCceecCCHHHHHHHHHH
Confidence            35678999999999999988 88999999999999999999987654443 34555667788999999999999999999


Q ss_pred             cCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHHHHHHHH
Q 008564          167 VAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVYTALK  246 (561)
Q Consensus       167 l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~  246 (561)
                      +.++|+.+.++.+. +.+.++++.++++|.     |+++|+.+.+..+++++++.++||.+++.     ...+.....+.
T Consensus        94 l~~~f~~~~l~~~~-~~~~~~~~~l~~~l~-----~~~vdl~~~l~~~~~~vi~~~~fg~~~~~-----~~~~~~~~~~~  162 (385)
T d1n97a_          94 LKDPFLPKNVRGYR-EAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPLSP-----SLAEHALKALD  162 (385)
T ss_dssp             HCGGGSHHHHHTTH-HHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSCCCH-----HHHHHHHHHHH
T ss_pred             Hhhhhcccccccch-hhHHHHHHHHHhhcc-----ccchhHHHHHHHHhhhhhhhhhhcccccc-----chhhhhhhhhh
Confidence            99999999999999 899999999887763     56899999999999999999999988743     22232333333


Q ss_pred             HHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHHHhcccC
Q 008564          247 EAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFLLASREE  326 (561)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~  326 (561)
                      .+...........  +     .....+..+....+.+..+       ..+             ..          ...++
T Consensus       163 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~-------~~~-------------~~----------~~~~~  205 (385)
T d1n97a_         163 RIMAQTRSPLALL--D-----LAAEARFRKDRGALYREAE-------ALI-------------VH----------PPLSH  205 (385)
T ss_dssp             HHHHHHHCGGGGG--C-----HHHHHHHHHHHHHHHHHHG-------GGT-------------TS----------TTGGG
T ss_pred             HHHHHHhhhhhhh--h-----hHHHHHHHHhhhhhHHHHH-------HHH-------------hh----------ccccc
Confidence            2222111111100  0     0011111111111110000       000             00          01235


Q ss_pred             CChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChhhhcCCc
Q 008564          327 VSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFEDIKDLK  406 (561)
Q Consensus       327 ~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~~l~~lp  406 (561)
                      ++++++.++++.+++||+|||+++++|++++|++|                |++|+++++|++.+               
T Consensus       206 l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~----------------P~v~~~l~~E~~~~---------------  254 (385)
T d1n97a_         206 LPRERALSEAVTLLVAGHETVASALTWSFLLLSHR----------------PDWQKRVAESEEAA---------------  254 (385)
T ss_dssp             SCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC----------------HHHHHHHHHCHHHH---------------
T ss_pred             CCHHHHHHHHHHHHHhhhccchhhhhhhhhHhhhh----------------cccccccccccccc---------------
Confidence            89999999999999999999999999999999999                99999999999875               


Q ss_pred             hhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 008564          407 FLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNESNTDF  486 (561)
Q Consensus       407 yL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~~~  486 (561)
                        .|||+|++|++|++|...++ +.+|+.++||.||+|+.|+++.+++|+|  +|+||++|+||||+++..     ....
T Consensus       255 --~a~i~EtlRl~p~~~~~~r~-~~~d~~~~g~~i~~g~~v~~~~~~~~~~--~~~dp~~F~PeRf~~~~~-----~~~~  324 (385)
T d1n97a_         255 --LAAFQEALRLYPPAWILTRR-LERPLLLGEDRLPPGTTLVLSPYVTQRL--HFPDGEAFRPERFLEERG-----TPSG  324 (385)
T ss_dssp             --HHHHHHHHHHSCSSCCEEEE-ESSCEEETTEEECTTCEEEECHHHHHHH--SSTTTTSCCTTHHHHSCC-----CCBT
T ss_pred             --cceeeccccccccccccccc-cccccccccccccccccccccccccccc--cCCCCcccCccccCcccC-----CCCC
Confidence              58999999999999986555 5678888999999999999999999987  699999999999986432     2345


Q ss_pred             cccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEecCCCccccccceeeecCCCeeEEEE
Q 008564          487 RFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELVPDQNINMTTGATIHTTNGLYMKLR  548 (561)
Q Consensus       487 ~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  548 (561)
                      .++|||+|+|.|+|++||.+|++++++.||++|+|++++++++.  ...++.|++|++|+++
T Consensus       325 ~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~--~~~~~~p~~~~~~r~r  384 (385)
T d1n97a_         325 RYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVL--AQVTLRPEGGLPARPR  384 (385)
T ss_dssp             TBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEE--ESSSEEETTCCEECCB
T ss_pred             CccCCCCCcccCchHHHHHHHHHHHHHHHHHhCEEEeCCCCccc--cceEEeecCCeEEEee
Confidence            79999999999999999999999999999999999998776654  3467889999988643


No 9  
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}
Probab=100.00  E-value=4.9e-51  Score=415.39  Aligned_cols=374  Identities=17%  Similarity=0.190  Sum_probs=288.4

Q ss_pred             hcccchHHHHHHHHHhCCeEEEcc-CCceEEEEeCHHHHHHHHhhCCCccCCchhhHH-------------hHhhcCCce
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLAA-GPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEV-------------SEFLFGSGF  152 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~l-g~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~-------------~~~~~g~~l  152 (561)
                      +..+++..+.++ ++||||+++.+ |+.++++|++++.+++|++++. .+........             ....+|.++
T Consensus         8 ~~~~~~~~~~~l-R~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l   85 (403)
T d1gwia_           8 FVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR-LVKDINVWGAWRRGEIPADWPLIGLANPGRSM   85 (403)
T ss_dssp             TCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT-EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG
T ss_pred             CccCchHHHHHH-HhcCCEEEEEeCCCceEEEeCCHHHHHHHhcCCc-cccCcccccccccccCccccccccccccCCcc
Confidence            345667777777 67899999987 6678999999999999997653 3332211111             112346788


Q ss_pred             eccCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCC
Q 008564          153 AIAEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLT  232 (561)
Q Consensus       153 ~~~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~  232 (561)
                      ++.+|+.|+++|++++++|+.+.++.+. +.+.+.++++++.+.   ..++.+|+...+...+...+...++|.+..   
T Consensus        86 l~~dG~~h~~~R~~~~~~fs~~~l~~~~-~~i~~~~~~ll~~l~---~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~---  158 (403)
T d1gwia_          86 LTVDGAEHRRLRTLVAQALTVRRVEHMR-GRITELTDRLLDELP---ADGGVVDLKAAFAYPLPMYVVADLMGIEEA---  158 (403)
T ss_dssp             GGCCHHHHHHHHHHHTTTSCHHHHHTTH-HHHHHHHHHHHHTSC---CSCCCEEHHHHTTTHHHHHHHHHHHTCCGG---
T ss_pred             ccCCcHHHHHHHHHHhhhccccchhhhh-hHHHHHHHHHhhhhc---ccCceeeeehhhhhhhhhhhhhhhcCcccc---
Confidence            8899999999999999999999999998 888888888877663   356789998877655544555566675432   


Q ss_pred             CCChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCC
Q 008564          233 ADSPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDS  312 (561)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  312 (561)
                          ....+.........                .........++...+..++.++++++...                .
T Consensus       159 ----~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------~  202 (403)
T d1gwia_         159 ----RLPRLKVLFEKFFS----------------TQTPPEEVVATLTELASIMTDTVAAKRAA----------------P  202 (403)
T ss_dssp             ----GHHHHHHHHHHHHC----------------TTSCHHHHHHHHHHHHHHHHHHHHHHHHS----------------C
T ss_pred             ----chhhcccccccccc----------------cchhHHHHHHHHHHHHHhHHHHHHHHhcC----------------c
Confidence                22222222221110                01112334456666777777777665431                1


Q ss_pred             CchHHHHHHhcc---cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHH
Q 008564          313 DPSILRFLLASR---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEID  389 (561)
Q Consensus       313 ~~~ll~~ll~~~---~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~  389 (561)
                      ..+.+..+....   ..++.+++..++..+++||+|||+++++|++++|++|                |++|+++++   
T Consensus       203 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt~~~l~~~~~~l~~~----------------p~~~~~l~~---  263 (403)
T d1gwia_         203 GDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTH----------------PEQRALVLS---  263 (403)
T ss_dssp             CSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHT---
T ss_pred             ccccccccccccccccchhhhhHHHHHHHHHHccccchhhhhhhhhhhhhhh----------------hHHHHHHHH---
Confidence            223444444332   3589999999999999999999999999999999999                999999986   


Q ss_pred             HHhCCCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCC-CCCCCCC
Q 008564          390 RVLQGRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVW-ERAEEFL  468 (561)
Q Consensus       390 ~~~~~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~-~dP~~F~  468 (561)
                                    +++|+++||+|++|++|+++...+|++.+|+.++||.||+|+.|+++.+++||||++| +||++|+
T Consensus       264 --------------~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~~~pdP~~F~  329 (403)
T d1gwia_         264 --------------GEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFD  329 (403)
T ss_dssp             --------------TSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHHHCGGGGSCC
T ss_pred             --------------hhhcchhhccchhhhcCcccccccccccCCeEecceeecccceeeeecccccCChhhcCCchhhcC
Confidence                          4679999999999999999999999999999999999999999999999999999999 7999999


Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEE
Q 008564          469 PERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMK  546 (561)
Q Consensus       469 P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~  546 (561)
                      ||||..           ..|+|||+|+|.|+|++||++|++++|+.|+++| +++++ +.+++.+..+.+.....+++|+
T Consensus       330 PeR~~~-----------~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~  398 (403)
T d1gwia_         330 LTRTSG-----------NRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVR  398 (403)
T ss_dssp             TTCCCS-----------SCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEE
T ss_pred             CCCCCC-----------CCcCccCCCCccChhHHHHHHHHHHHHHHHHHhCCCCEECCCcccceeCCccccCCCCceEEE
Confidence            999932           2589999999999999999999999999999999 99996 4556666666667777789998


Q ss_pred             EEE
Q 008564          547 LRQ  549 (561)
Q Consensus       547 ~~~  549 (561)
                      +++
T Consensus       399 ~~~  401 (403)
T d1gwia_         399 LAH  401 (403)
T ss_dssp             SSC
T ss_pred             Eec
Confidence            765


No 10 
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}
Probab=100.00  E-value=3.5e-49  Score=401.71  Aligned_cols=374  Identities=20%  Similarity=0.217  Sum_probs=282.2

Q ss_pred             hHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCchhhHH----------hHhhcCCceeccCCchhh
Q 008564           92 FLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEV----------SEFLFGSGFAIAEGPLWM  161 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~----------~~~~~g~~l~~~~g~~w~  161 (561)
                      +..++++.++|||||++++++.++|+|+||++++++|.+++..+..+.....          .....+.+++..+|+.|+
T Consensus        11 ~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~   90 (401)
T d1odoa_          11 HHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVENMFTAYGPNHR   90 (401)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGCCHHHHH
T ss_pred             hHHHHHHHHhhCCEEEEecCCceEEEECCHHHHHHHhcCCCcccccccccccccccccccchhhhccCCCcccCChHHHH
Confidence            4456666689999999999999999999999999999876543433222111          112235778888999999


Q ss_pred             hhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHHH
Q 008564          162 GRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAV  241 (561)
Q Consensus       162 ~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~  241 (561)
                      ++|+++.++|+.+.++.+. +.++++++++++++.. ...++++|+...+...+...+...++|....       ..+..
T Consensus        91 ~~R~~l~~~fs~~~v~~~~-~~i~~~~~~~~~~l~~-~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~  161 (401)
T d1odoa_          91 KLRRLVAPAFSARRVDAMR-PAVEAMVTGLVDRLAE-LPAGEPVDLRQELAYPLPIAVIGHLMGVPQD-------RRDGF  161 (401)
T ss_dssp             HHHHTTGGGGSHHHHHHHH-HHHHHHHHHHHHHHHH-SCTTSCEEHHHHTTTHHHHHHHHHHHTCCHH-------HHHHH
T ss_pred             HHHHHHHhhhCchhHHHHH-HHHHHHHHHHHhhhhh-ccccccccccchhhhcccccccccccccccc-------cchhh
Confidence            9999999999999999999 8999999999999965 3567799999988888888888888886542       11111


Q ss_pred             HHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHHH
Q 008564          242 YTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFLL  321 (561)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll  321 (561)
                      .........                .........+....+..++.+..+...+.    .         .+...+......
T Consensus       162 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~---------~~~~~~~~~~~~  212 (401)
T d1odoa_         162 RALVDGVFD----------------TTLDQAEAQANTARLYEVLDQLIAAKRAT----P---------GDDMTSLLIAAR  212 (401)
T ss_dssp             HHHHHHHHC----------------TTCCHHHHHHHHHHHHHHHHHHHHHHHHS----C---------CSSHHHHHHHHH
T ss_pred             hhhhhhhhh----------------ccchhHHHHHHHHHHHHHHHHHhhhhccC----C---------cccccccccccc
Confidence            111111100                00111223334444555554444333221    0         011122222222


Q ss_pred             hcc---cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCC
Q 008564          322 ASR---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPS  398 (561)
Q Consensus       322 ~~~---~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~  398 (561)
                      ...   +.++.+++.++++.++++|++||+.+++|.+++++.+                |..+++++.|           
T Consensus       213 ~~~~~~~~l~~~ei~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----------------~~~~~~~~~~-----------  265 (401)
T d1odoa_         213 DDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTR----------------PDQLALVRKG-----------  265 (401)
T ss_dssp             CC-----CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHC----------------HHHHHHHHHT-----------
T ss_pred             cccccCCCCCHHHHHHHHHHHHhccccchhhhhhhhhcccccc----------------hhhhhhcccc-----------
Confidence            221   2478999999999999999999999999999999999                8888777753           


Q ss_pred             hhhhcCCchhHHHhhhccccCCCCcccccccccCcc-CCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCC
Q 008564          399 FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDV-LPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGP  477 (561)
Q Consensus       399 ~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~-~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~  477 (561)
                            ..++.+||+|++|++|+++...+|.+.+|+ ..+||.||+|+.|.++.+++||||++|+||++|+||||+.   
T Consensus       266 ------~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~~~~~dp~~F~PeR~~~---  336 (401)
T d1odoa_         266 ------EVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRTVK---  336 (401)
T ss_dssp             ------SSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCSCC---
T ss_pred             ------ccccceeeccccccccccccccccccccceeecCCEEecCCccccccHHHHhCCcccCCchhhcCCCCCCC---
Confidence                  346788999999999999988877666654 5589999999999999999999999999999999999963   


Q ss_pred             CCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEEEE
Q 008564          478 MPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMKLR  548 (561)
Q Consensus       478 ~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~  548 (561)
                               .|+|||+|+|+|+|++||++|+++++++||++| +++++ ++++.....+.+.++..+++|++.
T Consensus       337 ---------~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~  400 (401)
T d1odoa_         337 ---------EHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH  400 (401)
T ss_dssp             ---------CCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred             ---------CCCCCCCCCcCChhHHHHHHHHHHHHHHHHHHCCCcEECCCCCCCcccCCCccCCCCceeEEEe
Confidence                     379999999999999999999999999999999 99997 445666666677888888999763


No 11 
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]}
Probab=100.00  E-value=1.9e-48  Score=395.86  Aligned_cols=376  Identities=15%  Similarity=0.153  Sum_probs=294.7

Q ss_pred             hcccchHHHHHHHHHhCCeEEEccC-CceEEEEeCHHHHHHHHhhCCCccCCch--------hhHHhHhhcCCceeccCC
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLAAG-PRNFVVVSDPAIAKHVLRNYGTKYAKGL--------VSEVSEFLFGSGFAIAEG  157 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~lg-~~~~vvv~dp~~i~~il~~~~~~~~~~~--------~~~~~~~~~g~~l~~~~g  157 (561)
                      ...+++..+.+++ ++|||+++.++ +.+.++|++++.++++++++. .+....        .........+.+++..+|
T Consensus        10 ~~~dP~~~~~~Lr-~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg   87 (399)
T d1jfba_          10 SGPEPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEK-LSKVRTRQGFPELSASGKQAAKAKPTFVDMDP   87 (399)
T ss_dssp             STTSCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTT-EECCTTSTTCCCCSHHHHHHTTSCCCGGGCCT
T ss_pred             cccChHHHHHHHH-hcCCeEEEecCCCceEEEEcCHHHHHHHHcCCc-cccCcccccCcccccccccccccCCchhhcCc
Confidence            3456788888885 67999998764 467889999999999997753 222211        111122234567888899


Q ss_pred             chhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChh
Q 008564          158 PLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPV  237 (561)
Q Consensus       158 ~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~  237 (561)
                      +.|+++|++++++|+.+.++.+. +.+++.++.+++++......+..+++...+...+.+.++..+||.....       
T Consensus        88 ~~h~~~R~~~~~~fs~~~l~~~~-~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-------  159 (399)
T d1jfba_          88 PEHMHQRSMVEPTFTPEAVKNLQ-PYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFND-------  159 (399)
T ss_dssp             THHHHHHTTTGGGGSHHHHHHHH-HHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGG-------
T ss_pred             HHHHHHHhhcCccccccccccch-hhHHHHHHHHHhhhhhccccccchhhhhhhhhhhHHHHHHHhhhhcchh-------
Confidence            99999999999999999999999 8999999999999988777778899999999999999999999976542       


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHH
Q 008564          238 IDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSIL  317 (561)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll  317 (561)
                      .+.+........                ...........+...+.+++.++++++++.                ...|.+
T Consensus       160 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~----------------~~~d~~  207 (399)
T d1jfba_         160 LEYLTQQNAIRT----------------NGSSTAREASAANQELLDYLAILVEQRLVE----------------PKDDII  207 (399)
T ss_dssp             HHHHHHHHHHHH----------------CTTSCHHHHHHHHHHHHHHHHHHHHHHHHS----------------CCSSHH
T ss_pred             hHHHHHHhhhhh----------------hcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------------cccccc
Confidence            122211111100                001122334455666777888888776542                122233


Q ss_pred             HHHHhc---ccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCC
Q 008564          318 RFLLAS---REEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQG  394 (561)
Q Consensus       318 ~~ll~~---~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~  394 (561)
                      ..++..   .+..+.+++...+..+++||+|||+++++|++++|++|                |++++|+++|.      
T Consensus       208 ~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt~~~l~~~~~~L~~~----------------pe~~~~L~~e~------  265 (399)
T d1jfba_         208 SKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQH----------------PDQLAQLKANP------  265 (399)
T ss_dssp             HHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------------HHHHHHHHHCG------
T ss_pred             ccccccccccCCCccchhhhhhhhhhhhccchhhhHHHHHHHHHhhc----------------hHHHHHHhccc------
Confidence            333322   23589999999999999999999999999999999999                99999999863      


Q ss_pred             CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCC
Q 008564          395 RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDL  474 (561)
Q Consensus       395 ~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~  474 (561)
                                 .+..+++.|++|++|+++...+|++.+++.++|+.||+|+.|+++.+++||||++|+||++|+||||..
T Consensus       266 -----------~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~~~dP~~F~PeR~~~  334 (399)
T d1jfba_         266 -----------SLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWP  334 (399)
T ss_dssp             -----------GGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCTTCCCC
T ss_pred             -----------ccccceeeecccccccccccccccccccccccCCcCcccccchhhhhhhcCChhhCCCccccCcCCCCC
Confidence                       467899999999999999999999999999999999999999999999999999999999999999963


Q ss_pred             CCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEEE
Q 008564          475 EGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMKL  547 (561)
Q Consensus       475 ~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  547 (561)
                      .          ..++|||+|+|.|+|++||++|++++|+.|+++| +++++ +..++.+...........++|+|
T Consensus       335 ~----------~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~  399 (399)
T d1jfba_         335 P----------QDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF  399 (399)
T ss_dssp             S----------SCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred             C----------CCCcCCCCCCccChhHHHHHHHHHHHHHHHHHhCCcCEECCCCCCceeCCCCCCCCCccceeeC
Confidence            3          2589999999999999999999999999999999 99987 44556655544444444566654


No 12 
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=100.00  E-value=4.5e-49  Score=400.98  Aligned_cols=370  Identities=15%  Similarity=0.184  Sum_probs=292.6

Q ss_pred             hcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCC-----------c----hhhHHhHhhcCCc
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAK-----------G----LVSEVSEFLFGSG  151 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~-----------~----~~~~~~~~~~g~~  151 (561)
                      +..+++..+.+++ +|||||++++++.++++|++++.++++++++. .+..           .    .........++.+
T Consensus        10 f~~dpy~~y~~lr-~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (402)
T d1z8oa1          10 FHVDWYRTYAELR-ETAPVTPVRFLGQDAWLVTGYDEAKAALSDLR-LSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN   87 (402)
T ss_dssp             GTSSHHHHHHHHH-HHCSEEEEEETTEEEEEECSHHHHHHHHHCTT-EECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred             hhhChHHHHHHHH-hcCCEEEEeeCCccEEEECCHHHHHHHhcCCc-cccCcccccccccccccccccchhhHHHHhccc
Confidence            3455777788875 57999999999999999999999999997642 2211           0    1112234456778


Q ss_pred             eeccCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCC
Q 008564          152 FAIAEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSL  231 (561)
Q Consensus       152 l~~~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~  231 (561)
                      ++..||++|+++|+++.++|+.+.++.+. +.+.+.++++++++    ..+..+|+...+...+.+.++..+||.+....
T Consensus        88 l~~~dg~~H~~~R~~l~~~fs~~~l~~~~-~~i~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  162 (402)
T d1z8oa1          88 MGTSDPPTHTRLRKLVSQEFTVRRVEAMR-PRVEQITAELLDEV----GDSGVVDIVDRFAHPLPIKVICELLGVDEKYR  162 (402)
T ss_dssp             GGGCCTTHHHHHHHHHHTTSCHHHHHHTH-HHHHHHHHHHHHTS----CSSSEEEHHHHTTTHHHHHHHHHHTTCCGGGT
T ss_pred             cccccHHHHhhhccceeeecccchhhHHH-HHHHHHHHHHhhcc----ccccccccccccccchhhhhhhhhhhhhHHHH
Confidence            88999999999999999999999999998 88888888887766    34678999999999999999999999765431


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCC
Q 008564          232 TADSPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVND  311 (561)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  311 (561)
                          ..+.....   ..    ....+           .......++...+..++.+.+..+++                +
T Consensus       163 ----~~~~~~~~---~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~rr~----------------~  204 (402)
T d1z8oa1         163 ----GEFGRWSS---EI----LVMDP-----------ERAEQRGQAAREVVNFILDLVERRRT----------------E  204 (402)
T ss_dssp             ----TTHHHHHH---HH----HCCCG-----------GGHHHHHHHHHHHHHHHHHHHHHHHH----------------S
T ss_pred             ----HHHHHHHH---HH----Hhccc-----------chhhhhHHHHHHHHHHHHHHHHHHHh----------------C
Confidence                11111111   10    01111           11222334455566666666665543                2


Q ss_pred             CCchHHHHHHhccc----CCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHH
Q 008564          312 SDPSILRFLLASRE----EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEE  387 (561)
Q Consensus       312 ~~~~ll~~ll~~~~----~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~E  387 (561)
                      ...++++.|+....    ..+++++..++..+++||+|||++++.|++++|++|                |++|+|+++|
T Consensus       205 ~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG~dTt~~~l~~~l~~l~~~----------------P~~~~~l~~e  268 (402)
T d1z8oa1         205 PGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTH----------------PDQLALVRRD  268 (402)
T ss_dssp             CCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHC
T ss_pred             CCCCHHHHHHHhhhhcCCCCCHHHHHHHHHHHhcccccchhhHHHHHHHHHhhh----------------hHHHHHHhcc
Confidence            34567788876532    479999999999999999999999999999999999                9999999997


Q ss_pred             HHHHhCCCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCC
Q 008564          388 IDRVLQGRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEF  467 (561)
Q Consensus       388 i~~~~~~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F  467 (561)
                      ++                 ++.+++.|++|+.|+++.. +|.+..|+.++||.||+|+.|+++.+++||||++|+||++|
T Consensus       269 ~~-----------------~~~~~~~~~~~~~~~~~~~-~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~dp~~f~dP~~F  330 (402)
T d1z8oa1         269 PS-----------------ALPNAVEEILRYIAPPETT-TRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRF  330 (402)
T ss_dssp             GG-----------------GHHHHHHHHHHHTCSSCCE-EEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSSSTTSC
T ss_pred             cc-----------------ccccchhhhhhhhhccccc-ccccccCcccCCccccccchhhhhhhhhccChhhCCCcccc
Confidence            54                 5789999999999987665 57777888889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCC-CccccccceeeecCCCeeE
Q 008564          468 LPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPD-QNINMTTGATIHTTNGLYM  545 (561)
Q Consensus       468 ~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~-~~~~~~~~~~~~~~~~~~v  545 (561)
                      +||||.            ..++|||+|+|.|+|++||++|++++|+.|+++| ++++.++ +++.+..+.++++..+++|
T Consensus       331 ~PeR~~------------~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v  398 (402)
T d1z8oa1         331 DVTRDT------------RGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPV  398 (402)
T ss_dssp             CTTSCC------------TTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEE
T ss_pred             CCCCCC------------CCCCCCCCCccCChhHHHHHHHHHHHHHHHHHhCCCCeECCCCCCceecCCCccCCCCceEE
Confidence            999983            2479999999999999999999999999999999 9999854 4667777777788888999


Q ss_pred             EE
Q 008564          546 KL  547 (561)
Q Consensus       546 ~~  547 (561)
                      ++
T Consensus       399 ~~  400 (402)
T d1z8oa1         399 RL  400 (402)
T ss_dssp             ET
T ss_pred             Ee
Confidence            86


No 13 
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]}
Probab=100.00  E-value=1.8e-48  Score=396.16  Aligned_cols=370  Identities=13%  Similarity=0.188  Sum_probs=281.4

Q ss_pred             hcccchHHHHHHHHHhCCeEEEc------cCCceEEEEeCHHHHHHHHhhCCCccCCchh------hHHhHhhcCCceec
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLA------AGPRNFVVVSDPAIAKHVLRNYGTKYAKGLV------SEVSEFLFGSGFAI  154 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~------lg~~~~vvv~dp~~i~~il~~~~~~~~~~~~------~~~~~~~~g~~l~~  154 (561)
                      ..+++|..+.++ ++|||||++.      +|...+++|++++.+++|++++. .|.+...      .......++.++++
T Consensus        19 ~~~dP~~~~~~l-R~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~-~fss~~~~~~~~~~~~~~~~~~~~l~~   96 (403)
T d1ueda_          19 TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE-HFTTRPQFTQSKSGAHVEAQFVGQIST   96 (403)
T ss_dssp             ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS-SEECCCCC---------CGGGTTCGGG
T ss_pred             cCCCCcHHHHHH-HhcCCEEEeccCCccccCCCcEEEECCHHHHHHHHcCCc-cccCCcccccccccccchhhccCcccc
Confidence            357789999888 5699999984      66678899999999999997653 5544321      11122334567888


Q ss_pred             cCCchhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 008564          155 AEGPLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTAD  234 (561)
Q Consensus       155 ~~g~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~  234 (561)
                      .||++|+++|++++++|+.+.++.+. +.+++.++++++.+..   .|+.+|+...+...+...+...+||....     
T Consensus        97 ~Dg~~h~~~Rr~l~~~Fs~~~l~~~~-~~i~~~~~~ll~~l~~---~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~-----  167 (403)
T d1ueda_          97 YDPPEHTRLRKMLTPEFTVRRIRRME-PAIQSLIDDRLDLLEA---EGPSADLQGLFADPVGAHALCELLGIPRD-----  167 (403)
T ss_dssp             CCTTHHHHHHHHHGGGSSHHHHHHHH-HHHHHHHHHHHHHHHH---HCTTEEHHHHTHHHHHHHHHHHHHTCCHH-----
T ss_pred             CChhHHHHHHHHHhHhhCHHHHHHhh-HHHHHHHHHHHHHhhc---cCCccchhhhhhhhhhhhhhHHHhccchh-----
Confidence            99999999999999999999999998 8999999999998864   36789998877666655555566775321     


Q ss_pred             ChhHHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCc
Q 008564          235 SPVIDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDP  314 (561)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  314 (561)
                        ....+....   . ....            ..............+.++++..++++++.                ...
T Consensus       168 --~~~~~~~~~---~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~rr~~----------------~~~  213 (403)
T d1ueda_         168 --DQREFVRRI---R-RNAD------------LSRGLKARAADSAAFNRYLDNLLARQRAD----------------PDD  213 (403)
T ss_dssp             --HHHHHHHHH---H-HCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHS----------------CCS
T ss_pred             --hhhhhhhhh---h-hccc------------chhhHHHHHHHHHHHHHHHHHHHHHHHhh----------------ccc
Confidence              111111111   1 0110            01122333445566777788888776532                233


Q ss_pred             hHHHHHHhc-ccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhC
Q 008564          315 SILRFLLAS-REEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQ  393 (561)
Q Consensus       315 ~ll~~ll~~-~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~  393 (561)
                      ++...+... ...++++++.++++.+++||+|||+++++|++++|++|                |++++++++|...   
T Consensus       214 ~~~~~~~~~~~~~ls~~~l~~~~~~~l~aG~dTt~~~l~~~l~~L~~~----------------p~~~~~~~~~~~~---  274 (403)
T d1ueda_         214 GLLGMIVRDHGDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDN----------------PGQIELLFESPEK---  274 (403)
T ss_dssp             SHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------------GGGTTHHHHCHHH---
T ss_pred             chhhhhhhcccccccHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc----------------cchhhhhhhhccc---
Confidence            455555443 34699999999999999999999999999999999999                9999999987654   


Q ss_pred             CCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCC
Q 008564          394 GRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFD  473 (561)
Q Consensus       394 ~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l  473 (561)
                                    ..+++.|.+|+.+++.....|.+.+|+.++|+.||+|+.|+++.+++||||++|+||++|+||||.
T Consensus       275 --------------~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~~~rdp~~f~dP~~F~PeR~~  340 (403)
T d1ueda_         275 --------------AERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANRAA  340 (403)
T ss_dssp             --------------HHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCTTSCC
T ss_pred             --------------ccceeeeeccccccccccceeecccccccCCCccccccceecchhcccCCcccCCCccccCCCCCC
Confidence                          467777777665556666778889999999999999999999999999999999999999999983


Q ss_pred             CCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEEE
Q 008564          474 LEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMKL  547 (561)
Q Consensus       474 ~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  547 (561)
                                  ..++|||+|+|.|+|++||++|+++++++|+++| +++++ +.+++.+..+++..+ ..++|+|
T Consensus       341 ------------~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~-~~lpv~f  403 (403)
T d1ueda_         341 ------------VSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCP-DQVPVTW  403 (403)
T ss_dssp             ------------CCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCB-SCCEEEC
T ss_pred             ------------CCCCCCCCCCccChHHHHHHHHHHHHHHHHHHhCCCCEECCCCCcceecCCceeCc-eeeeeeC
Confidence                        2479999999999999999999999999999999 89997 445566655554444 4577764


No 14 
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]}
Probab=100.00  E-value=1.6e-47  Score=389.40  Aligned_cols=377  Identities=13%  Similarity=0.132  Sum_probs=278.7

Q ss_pred             cccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCch-h---hH------HhHhhcCCceeccCC
Q 008564           88 GGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGL-V---SE------VSEFLFGSGFAIAEG  157 (561)
Q Consensus        88 ~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~-~---~~------~~~~~~g~~l~~~~g  157 (561)
                      ..+++..+.++ ++|||||++..  .+.++|++++.+++|++++. .+.... .   ..      ......+.+++..+|
T Consensus        10 ~~dP~~~~~~l-r~~gPv~~~~~--~~~~vvt~~~~v~~vl~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg   85 (401)
T d1q5da_          10 AEDPFPAIERL-REATPIFYWDE--GRSWVLTRYHDVSAVFRDER-FAVSREEWESSAEYSSAIPELSDMKKYGLFGLPP   85 (401)
T ss_dssp             TTCCHHHHHHH-HHHCSEEEETT--TTEEEECSHHHHHHHHTCTT-EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSCH
T ss_pred             HhCcHHHHHHH-HhcCCEEEECC--CCEEEEcCHHHHHHHhcCCC-cccCccccccccccccccchhhhhcccccccCCH
Confidence            45677666655 56799998854  46889999999999997653 222211 1   11      112233567888999


Q ss_pred             chhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChh
Q 008564          158 PLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPV  237 (561)
Q Consensus       158 ~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~  237 (561)
                      +.|+++|++++++|+.+.++.+. +.+.+.++.+++.+..    +..+|+...+...+...++..++|.....    .+.
T Consensus        86 ~~h~~~Rk~l~~~fs~~~l~~~~-~~i~~~~~~l~~~~~~----~~~~d~~~~~a~~~~~~~~~~~~~~~~~~----~~~  156 (401)
T d1q5da_          86 EDHARVRKLVNPSFTSRAIDLLR-AEIQRTVDQLLDARSG----QEEFDVVRDYAEGIPMRAISALLKVPAEC----DEK  156 (401)
T ss_dssp             HHHHHHHHHHGGGGSHHHHGGGH-HHHHHHHHHHHHHHTT----SSCEETTTTTGGGSHHHHHHHHTTCCGGG----HHH
T ss_pred             HHHHHhhheeecccccchhhhHH-HHHHHHHHHHHHhhhh----ccccchhHHHHhhhhhcccccccccchhh----HHH
Confidence            99999999999999999999998 8889999888888754    45666666655555555666677754321    122


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHH
Q 008564          238 IDAVYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSIL  317 (561)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll  317 (561)
                      .   ..............       ......................+.+++++.++               .....|++
T Consensus       157 ~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~d~l  211 (401)
T d1q5da_         157 F---RRFGSATARALGVG-------LVPRVDEETKTLVASVTEGLALLHGVLDERRR---------------NPLENDVL  211 (401)
T ss_dssp             H---HHHHHHHHHHTTTT-------TSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHH---------------SCCSSCHH
T ss_pred             H---HHHHHHHHHHhhcc-------ccccchhHHHHHHHHHHHHHHHHHHHHHhhhc---------------ccccccHH
Confidence            2   22222111111100       00011122334444445555555666555443               13345688


Q ss_pred             HHHHhcc---cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCC
Q 008564          318 RFLLASR---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQG  394 (561)
Q Consensus       318 ~~ll~~~---~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~  394 (561)
                      +.|+...   +..+++++..++..+++||+|||+++++|++++|+.|                |++|+++++|.+     
T Consensus       212 ~~l~~~~~~~~~~~~~~i~~~~~~~l~ag~etta~~l~~~l~~L~~~----------------p~~~e~l~~~~~-----  270 (401)
T d1q5da_         212 TMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRS----------------PEALELVKAEPG-----  270 (401)
T ss_dssp             HHHHHHHHSSTTCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHC----------------HHHHHHHHHCGG-----
T ss_pred             HHHHhhcccccchHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhh----------------HHHHHHhhcccc-----
Confidence            8887543   3578899999999999999999999999999999999                999999998744     


Q ss_pred             CCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCC
Q 008564          395 RSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDL  474 (561)
Q Consensus       395 ~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~  474 (561)
                                  +..+++.|.+|++++++...+|...+|+.++||.||+|+.|+++.+++||||++|+||++|+||||. 
T Consensus       271 ------------~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~rdp~~f~dP~~F~PeR~~-  337 (401)
T d1q5da_         271 ------------LMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDT-  337 (401)
T ss_dssp             ------------GHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTTCTTTSSSTTSCCTTSCC-
T ss_pred             ------------cccccccchhhccccccccccccccccccccCcccCcceeEeeeccccCCCcccCCCccccCCCCCC-
Confidence                        4578899999999999999999999999999999999999999999999999999999999999993 


Q ss_pred             CCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCCCccccccceeeecCCCeeEEEEE
Q 008564          475 EGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPDQNINMTTGATIHTTNGLYMKLRQ  549 (561)
Q Consensus       475 ~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  549 (561)
                                 .+|+|||.|+|.|+|++||++|++++|++|+++| ++++.++..+...  .++.+..+++|+++|
T Consensus       338 -----------~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~--~~~r~~~~l~v~~~p  400 (401)
T d1q5da_         338 -----------SASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYH--PAFRNIESLNVILKP  400 (401)
T ss_dssp             -----------TTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCC--SSBCCEEECEEESSC
T ss_pred             -----------CCCCCCCCCccCChhHHHHHHHHHHHHHHHHHhCCCCeECCCCeecCC--CcccCcccceEEEec
Confidence                       2589999999999999999999999999999999 9999865544433  244555678887765


No 15 
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=5.7e-47  Score=382.24  Aligned_cols=366  Identities=15%  Similarity=0.139  Sum_probs=269.0

Q ss_pred             ccchHHHHHHHHHhCCeEEEcc-CCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhHh------hcCCceeccCCchhh
Q 008564           89 GALFLPLFKWMNVYGPIYRLAA-GPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSEF------LFGSGFAIAEGPLWM  161 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~l-g~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~~------~~g~~l~~~~g~~w~  161 (561)
                      ...+..+.+ .+++|||+++.. +|.+.++|++++.++++++++.  +.+.........      ..+..+...+++.|+
T Consensus        15 ~~~~~~~~~-LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~H~   91 (395)
T d1n40a_          15 DRIPDAVAE-LRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRR--FSMKETAAAGAPRLNALTVPPEVVNNMGNIADA   91 (395)
T ss_dssp             SSCCHHHHH-HHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EESGGGGSTTCCCSSCCSSCGGGGGHHHHHHHT
T ss_pred             cCChHHHHH-HHhcCCEEEEEcCCCCeEEEECCHHHHHHHHcCCC--cCcCCCccCCccccccccCChHHhhcCCChhHH
Confidence            344555544 467899999976 5567899999999999997653  322211111000      112345666899999


Q ss_pred             hhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHH-HHHHHHHHHHHHHHhhcccCCCCCCCChhHHH
Q 008564          162 GRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNME-EKFSQLTLDVIGLSVFNYNFDSLTADSPVIDA  240 (561)
Q Consensus       162 ~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~-~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~  240 (561)
                      ++|+++.++|+.+ ...+. +.+.+.++++++.+..   .|+++|+. ++...+++++++. +||.+.+       ....
T Consensus        92 ~~R~~~~~~Fsp~-~~~~~-~~i~~~~~~ll~~l~~---~g~~~Dlv~~~a~~l~~~vi~~-llG~p~~-------d~~~  158 (395)
T d1n40a_          92 GLRKAVMKAITPK-APGLE-QFLRDTANSLLDNLIT---EGAPADLRNDFADPLATALHCK-VLGIPQE-------DGPK  158 (395)
T ss_dssp             TCHHHHHHHTSSC-STTHH-HHHHHHHHHHHHHHHH---HCSCEETTTTTHHHHHHHHHHH-HHTCCGG-------GHHH
T ss_pred             HHHHHHHHHhhHH-HHHHH-HHHHHHHHHHhhcccc---cccccccHHHHHHHhhhhhHHH-Hhhhhhh-------hHHH
Confidence            9999999999865 46676 8888899999888754   36788964 5667788999886 4786432       1122


Q ss_pred             HHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHH
Q 008564          241 VYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFL  320 (561)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  320 (561)
                      +.......   ....            .............+.+++..+++.                  .....++++.+
T Consensus       159 ~~~~~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~l  205 (395)
T d1n40a_         159 LFRSLSIA---FMSS------------ADPIPAAKINWDRDIEYMAGILEN------------------PNITTGLMGEL  205 (395)
T ss_dssp             HHHTHHHH---TBCC------------SSCCHHHHHHHHHHHHHHHHHHHC------------------TTCCSHHHHHH
T ss_pred             HHhhhhhh---hhhc------------chhhHHHHHHHHHHHHHHHHHHHH------------------hhhhhHHHHHh
Confidence            22221111   1100            001111222223333333333221                  12344677766


Q ss_pred             Hhcc-----cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCC
Q 008564          321 LASR-----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGR  395 (561)
Q Consensus       321 l~~~-----~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~  395 (561)
                      ....     +.++++++..+++.+++||+|||+++++|++++|++|                |++++++++|.       
T Consensus       206 ~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~----------------P~~~~~l~~e~-------  262 (395)
T d1n40a_         206 SRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQR----------------PQLRNLLHEKP-------  262 (395)
T ss_dssp             HHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------HHHHHHHHHCG-------
T ss_pred             hhhhccccccccccchhhHHHHHHHhhhcchhhhhhHHHHHHHhhC----------------ccccccccchh-------
Confidence            5432     2489999999999999999999999999999999999                99999999874       


Q ss_pred             CCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCC
Q 008564          396 SPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLE  475 (561)
Q Consensus       396 ~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~  475 (561)
                                .++.++|+|++|++|+++..++|.+++|++++|+.||+|+.|+++.+++||||++|+||++|+|+||.  
T Consensus       263 ----------~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~dP~~F~p~R~~--  330 (395)
T d1n40a_         263 ----------ELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPN--  330 (395)
T ss_dssp             ----------GGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSSTTSCCTTCSS--
T ss_pred             ----------hhhhhhhhhhcccccccccceeeecccccccccccccccceeeeeccccccccccCCCccccCCCCCC--
Confidence                      36799999999999988878889999999999999999999999999999999999999999999973  


Q ss_pred             CCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEEE
Q 008564          476 GPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMKL  547 (561)
Q Consensus       476 ~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~  547 (561)
                               ...|+|||+|+|.|+|++||++|++++++.|+++| +++++ +++++.+..+........++|++
T Consensus       331 ---------~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~  395 (395)
T d1n40a_         331 ---------PTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW  395 (395)
T ss_dssp             ---------TTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred             ---------CCCCCCCCCCCccChhHHHHHHHHHHHHHHHHHhCCCCEECCCcccCeeccCccccCCeeeeeeC
Confidence                     23589999999999999999999999999999999 99997 45567776666666666787764


No 16 
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306]}
Probab=100.00  E-value=6e-46  Score=380.87  Aligned_cols=376  Identities=16%  Similarity=0.204  Sum_probs=270.3

Q ss_pred             HHHHHHHHhCCeEEEccCC-ceEEEEeCHHHHHHHHhhCCCccCCch---------hhHHhHh------hcCCceeccCC
Q 008564           94 PLFKWMNVYGPIYRLAAGP-RNFVVVSDPAIAKHVLRNYGTKYAKGL---------VSEVSEF------LFGSGFAIAEG  157 (561)
Q Consensus        94 ~l~~~~~kyGpV~ri~lg~-~~~vvv~dp~~i~~il~~~~~~~~~~~---------~~~~~~~------~~g~~l~~~~g  157 (561)
                      .++++.+++|||+++...+ .++++|++++.+++|++++. .|+...         .......      ..+.++...||
T Consensus        29 ~~y~~lr~~~Pv~~~~~~g~~~~~vvt~~~dv~~vl~d~~-~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dg  107 (428)
T d1cpta_          29 PAFKWLRDEQPLAMAHIEGYDPMWIATKHADVMQIGKQPG-LFSNAEGSEILYDQNNEAFMRSISGGCPHVIDSLTSMDP  107 (428)
T ss_dssp             HHHHHHHHHCSEEEECCTTSCCEEEECSHHHHHHHHHCTT-TEESSSSCSSCCCHHHHHHHHHHTTTSSCSSCCGGGCCT
T ss_pred             HHHHHHHhcCCeEEEeeCCCceEEEeCCHHHHHHHHcCcc-cccCCccccccccccchhhhhhccccccccccchhhcCc
Confidence            4567778899999998744 68999999999999997753 333211         0111111      22356788899


Q ss_pred             chhhhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChh
Q 008564          158 PLWMGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPV  237 (561)
Q Consensus       158 ~~w~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~  237 (561)
                      +.|+++|+++++.|+.+.+..+. +.+.+.++.+++++..  ..|...++..+...++.++++.++ |....       .
T Consensus       108 ~~H~~~Rr~l~~~Fs~~~i~~~~-~~i~~~~~~ll~~l~~--~~~~~~~~~~~~~~l~~~v~~~~~-g~~~~-------~  176 (428)
T d1cpta_         108 PTHTAYRGLTLNWFQPASIRKLE-ENIRRIAQASVQRLLD--FDGECDFMTDCALYYPLHVVMTAL-GVPED-------D  176 (428)
T ss_dssp             THHHHHHHHHHTTSSHHHHGGGH-HHHHHHHHHHHHHHHT--SSSEEEHHHHTTTTHHHHHHHHHH-TCCGG-------G
T ss_pred             HHHHHHHhhhccccCcchhhcch-hhHHHHHHHHHHHHHh--hcccchhhhHhhhhhhHHHHHhhh-ccchh-------H
Confidence            99999999999999999999999 8999999999998864  345567777888888888888654 43321       1


Q ss_pred             HHHHHHHHHHHHHhccCcch--hhhHhh-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCc
Q 008564          238 IDAVYTALKEAELRSTDVLP--YWKVKA-LCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDP  314 (561)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  314 (561)
                      ...+......    ......  ...... ........++..+....+.+++.++++++.+                ....
T Consensus       177 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----------------~~~~  236 (428)
T d1cpta_         177 EPLMLKLTQD----FFGVHEPDEQAVAAPRQSADEAARRFHETIATFYDYFNGFTVDRRS----------------CPKD  236 (428)
T ss_dssp             HHHHHHHHHT----TTCC----------------CHHHHHHHHHHHHHHHHHHHHHHHTT----------------SCCS
T ss_pred             HHHHHHHHHH----HHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hccc
Confidence            1222221111    111000  000000 0001122334444445555555555444321                1122


Q ss_pred             hHHHHHHhcc---cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHH
Q 008564          315 SILRFLLASR---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRV  391 (561)
Q Consensus       315 ~ll~~ll~~~---~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~  391 (561)
                      ++........   ...+.+++..++..+++||++||+.+++|++++|++|                |+++++++++    
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~tt~~~l~~~~~~L~~~----------------p~~~~~~~~~----  296 (428)
T d1cpta_         237 DVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRN----------------PEQLALAKSD----  296 (428)
T ss_dssp             SHHHHHHHCBSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHC----
T ss_pred             ccccchhcccccccccchhHhHHHHHhhhhcccccccchhhhhhhhhhcC----------------hHhhhhhhhc----
Confidence            2333333222   2578899999999999999999999999999999999                9999888764    


Q ss_pred             hCCCCCChhhhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCC
Q 008564          392 LQGRSPSFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPER  471 (561)
Q Consensus       392 ~~~~~~~~~~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R  471 (561)
                                   +.|+.+|++|++|++|+++... |.+.+|+.++||.||+|+.|+++.+++||||++|+||++|+|||
T Consensus       297 -------------~~~~~~~~ee~lr~~pp~~~~~-r~~~~d~~i~G~~ip~Gt~V~~~~~~~~rDp~~~~dP~~F~PeR  362 (428)
T d1cpta_         297 -------------PALIPRLVDEAVRWTAPVKSFM-RTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITR  362 (428)
T ss_dssp             -------------GGGHHHHHHHHHHHHCCBCCCE-EEESSCEEETTEEECTTCEEEECHHHHTTCTTTCSSTTSCCTTC
T ss_pred             -------------ccccccchhhcccccccccccc-eeeeeeeeeCCEEccCCCEEEecHHhhCCCchhCCCccccCCCC
Confidence                         4689999999999999987665 55678899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCCCccccccceeeecCCCeeEEEEE
Q 008564          472 FDLEGPMPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPDQNINMTTGATIHTTNGLYMKLRQ  549 (561)
Q Consensus       472 ~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  549 (561)
                      |.            ..|+|||+|+|.|+|++||++|+++++++|+++| +++++.+.++...  ..+.....++|+++|
T Consensus       363 ~~------------~~~~pFG~G~r~C~G~~lA~~el~~~l~~ll~~f~~~~~~~~~~~~~~--~~~~~~~~l~v~~~~  427 (428)
T d1cpta_         363 FP------------NRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSVELSGPPRLVAT--NFVGGPKNVPIRFTK  427 (428)
T ss_dssp             CS------------CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHGGGEEEEEESSCCEECCC--SSBCSEEECEEEEEE
T ss_pred             CC------------CCCCCcCCCcccChhHHHHHHHHHHHHHHHHHhCCCCeECCCCeeccC--CCcCCcccceEEEec
Confidence            93            2489999999999999999999999999999999 6999865543322  223344578999886


No 17 
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}
Probab=100.00  E-value=1.8e-45  Score=373.83  Aligned_cols=365  Identities=16%  Similarity=0.174  Sum_probs=266.2

Q ss_pred             HHHHHHHhCCeEEEcc--CCceEEEEeCHHHHHHHHhhCCCccCCchhhHHhH------hhcCCceeccCCchhhhhhcc
Q 008564           95 LFKWMNVYGPIYRLAA--GPRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEVSE------FLFGSGFAIAEGPLWMGRRRA  166 (561)
Q Consensus        95 l~~~~~kyGpV~ri~l--g~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~~~------~~~g~~l~~~~g~~w~~~Rr~  166 (561)
                      +.+..++||||+++.+  |....++|++++.++++++++. .+.+........      ...+.++.+.||+.|+++|++
T Consensus        22 ~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dg~~H~~~Rr~  100 (399)
T d1s1fa_          22 VLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPR-FGREAVMDRQVTRLAPHFIPARGAVGFLDPPDHTRLRRS  100 (399)
T ss_dssp             HHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTT-EESTTTTTTTBCBSSSSCSSCTTSGGGCCTTHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEeccCCccCEEEecCHHHHHHHHcCCc-cccccccccccccccccccccccchhccCcHHHHHHHHH
Confidence            4445567899999986  4467889999999999997643 222211111111      112356778899999999999


Q ss_pred             cCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHHHHHHHH
Q 008564          167 VAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVYTALK  246 (561)
Q Consensus       167 l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~  246 (561)
                      ++++|+.+.++.+. +.+.+.++++++++.+   .|..+|+...+...+...++..+||....       ....+.....
T Consensus       101 l~~~Fs~~~l~~~~-~~i~~~~~~l~~~~~~---~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~  169 (399)
T d1s1fa_         101 VAAAFTARGVERVR-ERSRGMLDELVDAMLR---AGPPADLTEAVLSPFPIAVICELMGVPAT-------DRHSMHTWTQ  169 (399)
T ss_dssp             HHHHHSHHHHHHHH-HHHHHHHHHHHHHHHH---HCSSEEHHHHTTTHHHHHHHHHHHTCCGG-------GHHHHHHHHH
T ss_pred             hCcccCcchhHHHH-HHHHHHHHHHhhhccc---ccceeeehhhhhhhhhhheehhccCCchh-------hhhhhhhHHH
Confidence            99999999999998 8888899888877654   36789999888888888888888996532       2222222221


Q ss_pred             HHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHHHhcc-c
Q 008564          247 EAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFLLASR-E  325 (561)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~-~  325 (561)
                      ........             ...   ...+......++.+.+...+                .....++...+.... .
T Consensus       170 ~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~  217 (399)
T d1s1fa_         170 LILSSSHG-------------AEV---SERAKNEMNAYFSDLIGLRS----------------DSAGEDVTSLLGAAVGR  217 (399)
T ss_dssp             HHHHHHTT-------------CCC---CHHHHTHHHHHHHHHHHTSC----------------CSCCCSHHHHHHHHHHT
T ss_pred             HHhhcccc-------------chh---HHHHHHHHHHHHHHHHHHhh----------------cccccchhhhhcccccc
Confidence            11110000             000   11122223333333332211                122333443333322 2


Q ss_pred             CCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChhhhcCC
Q 008564          326 EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFEDIKDL  405 (561)
Q Consensus       326 ~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~~l~~l  405 (561)
                      ....++....+..+++||++||+++++|++++|+.|                |++++++++|.+                
T Consensus       218 ~~~~~~~~~~~~~~~~ag~~tT~~~l~~~l~~l~~~----------------p~~~~~~~~~~~----------------  265 (399)
T d1s1fa_         218 DEITLSEAVGLAVLLQIGGEAVTNNSGQMFHLLLSR----------------PELAERLRSEPE----------------  265 (399)
T ss_dssp             TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----------------HHHHHHHHHCGG----------------
T ss_pred             ccchHHHHHHHHHHHhhcccccccchhhhhhhhhhC----------------chhhhhhhhhhc----------------
Confidence            345566777778899999999999999999999999                999999998753                


Q ss_pred             chhHHHhhhccccCCCCcc-cccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008564          406 KFLTRCINESMRLYPHPPV-LIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNESNT  484 (561)
Q Consensus       406 pyL~a~i~E~lRl~p~~~~-~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~~  484 (561)
                       ++.+++.|++|+.|+.+. .++|.+.+|++++||.||+|+.|+++.+++||||++|+||++|+||||.           
T Consensus       266 -~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~~~dP~~F~PeR~~-----------  333 (399)
T d1s1fa_         266 -IRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERSP-----------  333 (399)
T ss_dssp             -GHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSSSTTSCCTTC-------------
T ss_pred             -ccccccccccccccccccccccceeeeeeeccceeecCCCeecccccccccChhhcCCccccCCCCCC-----------
Confidence             568899999999999875 4689999999999999999999999999999999999999999999962           


Q ss_pred             CccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCC-CccccccceeeecCCCeeEEEE
Q 008564          485 DFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPD-QNINMTTGATIHTTNGLYMKLR  548 (561)
Q Consensus       485 ~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~  548 (561)
                       ..|+|||+|+|.|+|++||++|+++++++|+++| ++++..+ +++.+..+.+.+....++|+|.
T Consensus       334 -~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~  398 (399)
T d1s1fa_         334 -NPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWH  398 (399)
T ss_dssp             -CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECC
T ss_pred             -CCCCCCCCCccCChhHHHHHHHHHHHHHHHHHHCCCCEECCCcccceeecCCcccCCeeEEEEEe
Confidence             3589999999999999999999999999999999 8999744 4566666666665567888874


No 18 
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]}
Probab=100.00  E-value=7.7e-45  Score=368.76  Aligned_cols=370  Identities=12%  Similarity=0.127  Sum_probs=280.9

Q ss_pred             hcccchHHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCch-h-hHHhHhhcCCceeccCCchhhhhh
Q 008564           87 LGGALFLPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGL-V-SEVSEFLFGSGFAIAEGPLWMGRR  164 (561)
Q Consensus        87 ~~~~~~~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~-~-~~~~~~~~g~~l~~~~g~~w~~~R  164 (561)
                      +..+++..+.++.+++++++-..-.+..+++|++++.+++++++.. .|+... . ...........+...|++.|+++|
T Consensus        24 ~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~-~Fss~~~~~~~~~~~~~~~~~~~~D~p~H~~~R  102 (404)
T d1re9a_          24 LSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYR-HFSSECPFIPREAGEAYDFIPTSMDPPEQRQFR  102 (404)
T ss_dssp             GGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTT-TEETTSCSSSHHHHHHCCCTTTTCCTTHHHHHH
T ss_pred             hhcCcHHHHHHHHhhCCCCEEEecCCCCEEEEcCHHHHHHHHcCCC-cCcCCCCCCccccccccccccccCCCHHHHHHH
Confidence            3456788888887777764333222236899999999999998653 454432 1 111122233445667999999999


Q ss_pred             cccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHH-HHHHHHHHHHHhhcccCCCCCCCChhHHHHHH
Q 008564          165 RAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKF-SQLTLDVIGLSVFNYNFDSLTADSPVIDAVYT  243 (561)
Q Consensus       165 r~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~-~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~  243 (561)
                      +++.+.|+.+.+..+. +.+++.++++++.+..    ++.+|+...+ ..+++++++.+ ||.+..       ....+..
T Consensus       103 ~~l~~~Fs~~~l~~~~-~~i~~~~~~ll~~~~~----~g~~D~v~~~a~~l~~~vi~~l-lG~p~~-------~~~~~~~  169 (404)
T d1re9a_         103 ALANQVVGMPVVDKLE-NRIQELACSLIESLRP----QGQCNFTEDYAEPFPIRIFMLL-AGLPEE-------DIPHLKY  169 (404)
T ss_dssp             HHHHHHHSHHHHHHHH-HHHHHHHHHHHHHHGG----GSEEEHHHHTTTHHHHHHHHHH-TTCCGG-------GHHHHHH
T ss_pred             HhccCcCCcchHHHHH-HHHHHHHHHHHhhhhc----cCceeeeehhhhHHHHHHHHHH-Hhhccc-------chhhhhh
Confidence            9999999999999999 8999999999988854    3468876555 77888888864 776532       1222222


Q ss_pred             HHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHHHhc
Q 008564          244 ALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFLLAS  323 (561)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~  323 (561)
                      ....... .                ........+...+.+++.++++.+++                ....++++.++..
T Consensus       170 ~~~~~~~-~----------------~~~~~~~~a~~~l~~~~~~li~~~r~----------------~~~~d~~~~~~~~  216 (404)
T d1re9a_         170 LTDQMTR-P----------------DGSMTFAEAKEALYDYLIPIIEQRRQ----------------KPGTDAISIVANG  216 (404)
T ss_dssp             HHHHHHS-C----------------CSSSCHHHHHHHHHHHHHHHHHHHHH----------------SCCSSHHHHHHTC
T ss_pred             hhhhhhh-h----------------hhhHHHHHHHHHHHHHHHHHHHHHhh----------------cccccchhhhhhc
Confidence            2111110 0                01112234455667777777776654                2234577777765


Q ss_pred             c---cCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChh
Q 008564          324 R---EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFE  400 (561)
Q Consensus       324 ~---~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~  400 (561)
                      .   +.++++++...+..+++||+|||+++++|++++|+.|                |++++++++              
T Consensus       217 ~~~~~~~~~~e~~~~~~~l~~ag~eTt~~~l~~~~~~L~~~----------------p~~~~~l~~--------------  266 (404)
T d1re9a_         217 QVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKS----------------PEHRQELIE--------------  266 (404)
T ss_dssp             EETTEECCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHC----------------HHHHHHHHH--------------
T ss_pred             ccccccCcHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh----------------hHHHHHHHh--------------
Confidence            3   2589999999999999999999999999999999999                999988776              


Q ss_pred             hhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCC
Q 008564          401 DIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPN  480 (561)
Q Consensus       401 ~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~  480 (561)
                         +..++.++|+|++|++|++.  ..|.+.+|++++|+.||+|+.|+++.+++||||++|+||++|+|+|..       
T Consensus       267 ---~~~~~~~~v~E~lR~~~p~~--~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~~f~dPd~F~p~R~~-------  334 (404)
T d1re9a_         267 ---RPERIPAACEELLRRFSLVA--DGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQK-------  334 (404)
T ss_dssp             ---CGGGHHHHHHHHHHHTCCBC--CEEEESSCEEETTEEECTTCEEECCHHHHTTCTTTSSSTTSCCTTCSS-------
T ss_pred             ---hhhccccccccccccccccc--cccccccceecCCccCccchhhhhhhHhhcCCcccCCCccccCCCCCC-------
Confidence               45788999999999999764  468888999999999999999999999999999999999999999952       


Q ss_pred             CCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCCCccccccceeeecCCCeeEEEEEec
Q 008564          481 ESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPDQNINMTTGATIHTTNGLYMKLRQRQ  551 (561)
Q Consensus       481 ~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~  551 (561)
                           ..+++||+|+|.|+|++||++|++++++.|+++| ++++.++.+.......+ +....++|+++++.
T Consensus       335 -----~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~-~g~~~lpv~~~P~~  400 (404)
T d1re9a_         335 -----VSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIV-SGVQALPLVWDPAT  400 (404)
T ss_dssp             -----CCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSB-CEESCCEEECCGGG
T ss_pred             -----CCCCCCCCCcccCchHHHHHHHHHHHHHHHHHHCCCcEECCCCceeccCCCc-cCceeeeEEEeecC
Confidence                 2479999999999999999999999999999999 99998777766554444 34457999998765


No 19 
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]}
Probab=100.00  E-value=1.6e-43  Score=358.61  Aligned_cols=359  Identities=11%  Similarity=0.176  Sum_probs=268.2

Q ss_pred             HHHhCCeEEEccC----CceEEEEeCHHHHHHHHhhCCCccCCchhhHH----------hHhhcCCceeccCCchhhhhh
Q 008564           99 MNVYGPIYRLAAG----PRNFVVVSDPAIAKHVLRNYGTKYAKGLVSEV----------SEFLFGSGFAIAEGPLWMGRR  164 (561)
Q Consensus        99 ~~kyGpV~ri~lg----~~~~vvv~dp~~i~~il~~~~~~~~~~~~~~~----------~~~~~g~~l~~~~g~~w~~~R  164 (561)
                      .+.+||++++.++    +.+.++|++++.+++|+.++. .|..+.....          .......+++..||+.|+++|
T Consensus        18 lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~-~f~s~~~~~~~~~~~~~~~~~~~~~~~~ll~~Dg~~H~~~R   96 (394)
T d1lfka_          18 LLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEHTRLR   96 (394)
T ss_dssp             HHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGGCCTTHHHHHH
T ss_pred             HHHhCCeeEEECCCCCCCceEEEeCCHHHHHHHHcCCc-cccCCccccccccccccccccchhhccchhhcCChhHHHHH
Confidence            3778999988653    356789999999999997653 4543221111          111123457778999999999


Q ss_pred             cccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHHHHHH
Q 008564          165 RAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVYTA  244 (561)
Q Consensus       165 r~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~  244 (561)
                      ++++++|+.+.++.+. +.+++.++++++++.+   .|+++|+...+...+...+...+||.+...       ...+...
T Consensus        97 ~~l~~~fs~~~v~~~~-~~i~~~~~~ll~~l~~---~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~  165 (394)
T d1lfka_          97 RKLTPGFTLRKMQRMA-PYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCELVGVPRDD-------RDMFMKL  165 (394)
T ss_dssp             HHHGGGGCHHHHHHHH-HHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHHHHTCCGGG-------HHHHHHH
T ss_pred             HHhhhhcCHHHHHHHH-HHHHHHHHHHHhhhcc---cCCccchhhHhhhhhhheeeeeccCcchhh-------HHHHHHH
Confidence            9999999999999998 8999999999988864   367899887775555555555678865421       1222222


Q ss_pred             HHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHH-HHhc
Q 008564          245 LKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRF-LLAS  323 (561)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-ll~~  323 (561)
                      ...    ....            .........+...+.+++.++++++++..                ..++... ....
T Consensus       166 ~~~----~~~~------------~~~~~~~~~~~~~l~~~l~~~i~~~r~~~----------------~~~~~~~~~~~~  213 (394)
T d1lfka_         166 CHG----HLDA------------SLSQKRRAALGDKFSRYLLAMIARERKEP----------------GEGMIGAVVAEY  213 (394)
T ss_dssp             HHH----TTCT------------TSCHHHHHHHHHHHHHHHHHHHHHHHHSC----------------CSSHHHHHHHHH
T ss_pred             Hhh----cccc------------cchhHHHHHHHHHHHHHHHHHHHHhhhcc----------------ccccchhhhhcc
Confidence            111    1110            11122334455677778888887765421                1112111 1222


Q ss_pred             ccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChhhhc
Q 008564          324 REEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFEDIK  403 (561)
Q Consensus       324 ~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~~l~  403 (561)
                      ....+.+++.++++.+++||++||+++++|++++++.|                |+.+++++++.               
T Consensus       214 ~~~~~~~el~~~~~~~~~ag~~tt~~~~~~~~~~l~~~----------------~~~~~~~~~~~---------------  262 (394)
T d1lfka_         214 GDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRH----------------PEQIDAFRGDE---------------  262 (394)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHS----------------GGGGGGGSSCH---------------
T ss_pred             cCCCCHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcc----------------hhhhhhhcccc---------------
Confidence            34689999999999999999999999999999999999                87776655543               


Q ss_pred             CCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 008564          404 DLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNESN  483 (561)
Q Consensus       404 ~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~~~~  483 (561)
                        .++..++.|.+|+.++.....+|++.+|+.++||.||+|+.|+++.+++||||++|+||++|+|||+           
T Consensus       263 --~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~-----------  329 (394)
T d1lfka_         263 --QSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTRE-----------  329 (394)
T ss_dssp             --HHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTTTTSCCTTSC-----------
T ss_pred             --cccccchhcccccccccccceeeccccCeeecCceeccCCccccccccccCCcccccChhhcCCCCC-----------
Confidence              3467899999999998888889999999999999999999999999999999999999999999995           


Q ss_pred             CCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEec-CCCccccccceeeecCCCeeEE
Q 008564          484 TDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELV-PDQNINMTTGATIHTTNGLYMK  546 (561)
Q Consensus       484 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~-~~~~~~~~~~~~~~~~~~~~v~  546 (561)
                       ...|+|||+|+|.|+|++||++|++++++.|+++| +++++ +++++.+..+.+.+....++|+
T Consensus       330 -~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~  393 (394)
T d1lfka_         330 -PIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVA  393 (394)
T ss_dssp             -CCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEE
T ss_pred             -CCCCCCCCCCCcCCchHHHHHHHHHHHHHHHHHhCCCCEECCCcCcceeecCCCCCCCeeeeee
Confidence             23589999999999999999999999999999999 99997 4566777666666555566665


No 20 
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00  E-value=3.5e-41  Score=337.77  Aligned_cols=349  Identities=18%  Similarity=0.228  Sum_probs=247.6

Q ss_pred             HHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCch--hhHHhHhh----------cCCceeccCCchhhh
Q 008564           95 LFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGL--VSEVSEFL----------FGSGFAIAEGPLWMG  162 (561)
Q Consensus        95 l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~--~~~~~~~~----------~g~~l~~~~g~~w~~  162 (561)
                      +++..+++|||++.   + +.++|++++.+++++++.. .|....  ........          .+..+...||+.|++
T Consensus         4 ~~~~lR~~~Pv~~~---~-~~w~vt~~~~v~~vl~d~~-~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~   78 (366)
T d1io7a_           4 WFSEMRKKDPVYYD---G-NIWQVFSYRYTKEVLNNFS-KFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDE   78 (366)
T ss_dssp             HHHHHHHHCSEEEC---S-SCEEECSHHHHHHHHHCTT-TEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHH
T ss_pred             HHHHHHhcCCEEEe---C-CEEEEeCHHHHHHHhcCcc-ccccCccccccccccccccccccccccccchhhCCcHHHHH
Confidence            34445778999864   3 5788999999999997654 443321  11111111          124467789999999


Q ss_pred             hhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHHHH
Q 008564          163 RRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVY  242 (561)
Q Consensus       163 ~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~  242 (561)
                      +|+++.+.|+.+.++.+. +.+++.++.+++.+.     +..+|+...+.......+...++|.+..       ..+.+.
T Consensus        79 ~R~~~~~~f~~~~l~~~~-~~i~~~a~~ll~~~~-----~~~~D~~~~~a~~~~~~~~~~~~g~~~~-------~~~~~~  145 (366)
T d1io7a_          79 LRSMSADIFSPQKLQTLE-TFIRETTRSLLDSID-----PREDDIVKKLAVPLPIIVISKILGLPIE-------DKEKFK  145 (366)
T ss_dssp             HHGGGTTTTCHHHHHHHH-HHHHHHHHHHHHTCC-----TTSEEHHHHTTTHHHHHHHHHHHTCCGG-------GHHHHH
T ss_pred             HHHhhhhhhhhcchHHHH-HHHHHHHHHHHHhcc-----cccccccchhhhhhhheeeeeccCCchh-------HHHHHH
Confidence            999999999999999999 888888888877642     3468888777777777777788886542       222221


Q ss_pred             HHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHHHh
Q 008564          243 TALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFLLA  322 (561)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  322 (561)
                      ..    .........        .......    .   ...+ .+.+...+..              .....+++.....
T Consensus       146 ~~----~~~~~~~~~--------~~~~~~~----~---~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~~  191 (366)
T d1io7a_         146 EW----SDLVAFRLG--------KPGEIFE----L---GKKY-LELIGYVKDH--------------LNSGTEVVSRVVN  191 (366)
T ss_dssp             HH----GGGCTTSCC--------CTTCHHH----H---HHHH-HHHHHHHHHH--------------TTSSCHHHHHHHT
T ss_pred             HH----HHHHHhhcc--------chhhHHH----H---HHHH-HHHhhhhhcc--------------ccchhhhhhhhhc
Confidence            11    100000000        0000000    0   0111 1111111111              1223344444433


Q ss_pred             cccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChhhh
Q 008564          323 SREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFEDI  402 (561)
Q Consensus       323 ~~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~~l  402 (561)
                        ..++++|+.++++.+++||+|||+++++|+++.++.+                |+.+.+...+               
T Consensus       192 --~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~----------------~~~~~~~~~~---------------  238 (366)
T d1io7a_         192 --SNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRF----------------NLWQRIREEN---------------  238 (366)
T ss_dssp             --SSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHT---------------
T ss_pred             --ccCCHHHHHHHHHHHHHhccchhHHHHHHHHHHhhcc----------------cccccccccc---------------
Confidence              3589999999999999999999999999999999999                8777665543               


Q ss_pred             cCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 008564          403 KDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNES  482 (561)
Q Consensus       403 ~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~~~  482 (561)
                          ++.+++.|++|+.|+++. ..|.+++|+.++|+.||+|+.|+++.+++||||++|+||++|+||||.         
T Consensus       239 ----l~~~~~ee~~r~~~~~~~-~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~---------  304 (366)
T d1io7a_         239 ----LYLKAIEEALRYSPPVMR-TVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNP---------  304 (366)
T ss_dssp             ----CHHHHHHHHHHHSCSBCC-EEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCS---------
T ss_pred             ----hhhhhhhhhhhccccccc-cceeccccccccccccCCCCEEeeeeccccccccccCchhhcCCCCCC---------
Confidence                456788899999998766 457778899999999999999999999999999999999999999973         


Q ss_pred             CCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcc-eEEecCCCccccccceeeecCCCeeEEEE
Q 008564          483 NTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNM-NFELVPDQNINMTTGATIHTTNGLYMKLR  548 (561)
Q Consensus       483 ~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  548 (561)
                         ..++|||+|+|.|+|++||++|++++|++|+++| ++++++++...   ..+.+....++|+++
T Consensus       305 ---~~~l~FG~G~r~C~G~~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~---~~~~~~~~~lpVrl~  365 (366)
T d1io7a_         305 ---NPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKVP---NEVLNGYKRLVVRLK  365 (366)
T ss_dssp             ---CCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHTTCSEEEEEEEEECC---CSSBCCEEEEEEEEE
T ss_pred             ---CCCCCCCCCccCChhHHHHHHHHHHHHHHHHHHCCCCeeCCCccCC---CCccCCCceeEEEEe
Confidence               2489999999999999999999999999999999 69998654433   223343456888876


No 21 
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=100.00  E-value=1.9e-41  Score=339.62  Aligned_cols=351  Identities=15%  Similarity=0.179  Sum_probs=238.0

Q ss_pred             HHHHHHHHHhCCeEEEccCCceEEEEeCHHHHHHHHhhCCCccCCch--h---hHH-------hHhhcCCceeccCCchh
Q 008564           93 LPLFKWMNVYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTKYAKGL--V---SEV-------SEFLFGSGFAIAEGPLW  160 (561)
Q Consensus        93 ~~l~~~~~kyGpV~ri~lg~~~~vvv~dp~~i~~il~~~~~~~~~~~--~---~~~-------~~~~~g~~l~~~~g~~w  160 (561)
                      ..+.++ +++|||++.  +  ..++|++++.++++++++. .|....  .   ...       .....+.+++..+|+.|
T Consensus         3 ~~~~~l-R~~~Pv~~~--~--~~w~vt~~~di~~vl~d~~-~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H   76 (367)
T d1ue8a_           3 DWFKQM-RKESPVYYD--G--KVWNLFKYEDCKMVLNDHK-RFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLH   76 (367)
T ss_dssp             HHHHHH-HHHCSEEEC--S--SCEEECCHHHHHHHHTCTT-TEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHH
T ss_pred             HHHHHH-HhcCCEEee--C--CEEEECCHHHHHHHhcCCc-cccCCccccCccccccccccccccccccccccccCcHHH
Confidence            345555 568999975  3  3678999999999997653 333211  0   000       01112345777899999


Q ss_pred             hhhhcccCcccchHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeHHHHHHHHHHHHHHHHhhcccCCCCCCCChhHHH
Q 008564          161 MGRRRAVAPSLHKKYLSVIVDCVFCKCAERLVERLQTDALNGTAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDA  240 (561)
Q Consensus       161 ~~~Rr~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vdl~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~  240 (561)
                      +++|+++.++|+.+.+.  . +.+.+.++++++.+      ++.+|+...+.......+...++|.+...        ..
T Consensus        77 ~~~R~~~~~~f~~~~l~--~-~~i~~~~~~ll~~l------~~~~d~~~~~~~~~~~~~~~~~lg~~~~~--------~~  139 (367)
T d1ue8a_          77 DELRNLTADAFNPSNLP--V-DFVREVTVKLLSEL------DEEFDVIESFAIPLPILVISKMLGINPDV--------KK  139 (367)
T ss_dssp             HHHHHHHHGGGSGGGSC--H-HHHHHHHHHHHTTC------CSEEEHHHHTTTHHHHHHHHHHHTCCCCH--------HH
T ss_pred             hhhHhcccccCChhhhc--h-HHHHHHHHHHHhhh------ccccchhhhhhhhhhhhhhhhcccccccc--------hh
Confidence            99999999999998876  3 56666666666544      45788876666555555566778865321        11


Q ss_pred             HHHHHHHHHHhccCcchhhhHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCCchHHHHH
Q 008564          241 VYTALKEAELRSTDVLPYWKVKALCKIVPRQIKAEKAVTVIRKTVEELIIKCKEIVETEGERIDDEEYVNDSDPSILRFL  320 (561)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  320 (561)
                      +..............         .....       ..+.+.+.+........    ...         .+...+.+...
T Consensus       140 ~~~~~~~~~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~  190 (367)
T d1ue8a_         140 VKDWSDLVALRLGRA---------DEIFS-------IGRKYLELISFSKKELD----SRK---------GKEIVDLTGKI  190 (367)
T ss_dssp             HHHHHHHHHTTSSSS---------STTTC-------CCHHHHHHHHHHHHHHH----HHT---------TCCCCSHHHHH
T ss_pred             HHHHHHHHHhhcchh---------HHHHH-------HHHHHHHHHHHHHHHHH----hhh---------ccccchhhhhh
Confidence            111111111111000         00000       11112222222222222    111         12222333332


Q ss_pred             HhcccCCChHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhchhHHHHHHhhhhhhhchhHHHHHHHHHHHHhCCCCCChh
Q 008564          321 LASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKEMESLIRFTLRNRLLEDCNSLMKAQEEIDRVLQGRSPSFE  400 (561)
Q Consensus       321 l~~~~~~~~~~i~~~~~~~l~AG~dTts~~l~~~l~~L~~~~~~~~~~~~~~~~~~~p~~~~klr~Ei~~~~~~~~~~~~  400 (561)
                        ...+++++++.+++..+++||+|||+++++|++++|+++                |+.+....+              
T Consensus       191 --~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~----------------~~~~~~~~~--------------  238 (367)
T d1ue8a_         191 --ANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLY----------------NSWDYVREK--------------  238 (367)
T ss_dssp             --HSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------TCHHHHHHH--------------
T ss_pred             --hhccCCHHHhhhhhhheeeeccccccccccchHHHhhhc----------------cccchhhhh--------------
Confidence              234689999999999999999999999999999999999                766544443              


Q ss_pred             hhcCCchhHHHhhhccccCCCCcccccccccCccCCCCeeeCCCCEEEEecccccCCCcCCCCCCCCCCCCCCCCCCCCC
Q 008564          401 DIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPN  480 (561)
Q Consensus       401 ~l~~lpyL~a~i~E~lRl~p~~~~~~~r~~~~~~~~~g~~Ip~G~~v~~~~~~~~~d~~~~~dP~~F~P~R~l~~~~~~~  480 (561)
                            +..++|+|+||++|+++.. +|.+++|+.++|+.||+|+.|+++.+++||||++|+||++|+|+||.       
T Consensus       239 ------~~~~ai~E~lR~~p~~~~~-~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~-------  304 (367)
T d1ue8a_         239 ------GALKAVEEALRFSPPVMRT-IRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTP-------  304 (367)
T ss_dssp             ------CSHHHHHHHHHHSCSBCCE-EEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCS-------
T ss_pred             ------hhHHHHHhhhhhccccccc-cccccccceeeeeeeecCCcccccccccccCcccCCChhhcCCCCCC-------
Confidence                  2347899999999998775 56677888899999999999999999999999999999999999983       


Q ss_pred             CCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcceEEec-CCCccccccceeeecCCCeeEEEEE
Q 008564          481 ESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAILLQNMNFELV-PDQNINMTTGATIHTTNGLYMKLRQ  549 (561)
Q Consensus       481 ~~~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~la~ll~~f~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  549 (561)
                           ..++|||+|+|.|+|++||++|+++++++|+++|+++.. +.+.+.  . ........++|++++
T Consensus       305 -----~~~l~FG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~--~-~~~~g~~~l~Vr~~r  366 (367)
T d1ue8a_         305 -----NPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIVKKEKID--N-EVLNGYRKLVVRVER  366 (367)
T ss_dssp             -----CCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHEEEEEEEEEEECS--C-SSBCCEEEEEEEEEE
T ss_pred             -----CCCCCCCCCCcCChhHHHHHHHHHHHHHHHHHhCCccccCCCcccc--C-CCcCCCccceEEEEE
Confidence                 247999999999999999999999999999999998654 333332  1 122233468888875


No 22 
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=51.71  E-value=6.5  Score=25.02  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=17.0

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHhC
Q 008564          370 LRNRLLEDCNSLMKAQEEIDRVLQ  393 (561)
Q Consensus       370 ~~~~~~~~p~~~~klr~Ei~~~~~  393 (561)
                      +++-|.++|++.+++.++|...+|
T Consensus        37 a~~~L~enpel~~eie~~ir~~lG   60 (60)
T d1mo6a2          37 ARNFLVENADVADEIEKKIKEKLG   60 (60)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHcC
Confidence            344455559999999988877543


No 23 
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.43  E-value=19  Score=25.92  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=38.8

Q ss_pred             CCCCCCCCccCCccccHHhhhcccchHHHHHHHHHhCCeEEEccC------CceEEEEeCHHHHHHHHh
Q 008564           67 QSDESNIPVASAKLDDVTDLLGGALFLPLFKWMNVYGPIYRLAAG------PRNFVVVSDPAIAKHVLR  129 (561)
Q Consensus        67 ~pgp~~lP~ig~~~~~~~~~~~~~~~~~l~~~~~kyGpV~ri~lg------~~~~vvv~dp~~i~~il~  129 (561)
                      ||.....=|+|+       +....-.+.+.++..+||+|..+.+.      |.-+|...+.+.+..++.
T Consensus         3 pp~~~r~l~V~n-------Lp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~   64 (114)
T d2f9da1           3 PPEVNRILYIRN-------LPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD   64 (114)
T ss_dssp             CTTCCSEEEEES-------CCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEEC-------CCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHH
Confidence            444444556776       32334467899999999999887752      135777788888888875


No 24 
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=40.40  E-value=14  Score=23.33  Aligned_cols=24  Identities=4%  Similarity=-0.009  Sum_probs=16.7

Q ss_pred             HhhhhhhhchhHHHHHHHHHHHHh
Q 008564          369 TLRNRLLEDCNSLMKAQEEIDRVL  392 (561)
Q Consensus       369 ~~~~~~~~~p~~~~klr~Ei~~~~  392 (561)
                      .+++-|.++|++.+.+.++|...+
T Consensus        35 ~a~~~L~enpel~~eie~~i~~~l   58 (59)
T d1xp8a2          35 KTIAYIAERPEMEQEIRDRVMAAI   58 (59)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            344555666999988888877653


No 25 
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.40  E-value=30  Score=24.51  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             ccchHHHHHHHHHhCCeEEEccCC---ceEEEEeCHHHHHHHHhh-CCCccCC
Q 008564           89 GALFLPLFKWMNVYGPIYRLAAGP---RNFVVVSDPAIAKHVLRN-YGTKYAK  137 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~lg~---~~~vvv~dp~~i~~il~~-~~~~~~~  137 (561)
                      ..-.+.|.++..+||+|.++.+..   .-+|-..+.+.+...+.. ++..+..
T Consensus        21 ~~t~~~L~~~F~~fG~I~~v~l~~~kg~afV~f~~~~~A~~A~~~lng~~~~g   73 (111)
T d1whxa_          21 GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHH   73 (111)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred             CCCHHHHHhhhhccCCccEEEeeccCceEEEEEcCHHHHHHHHHHHcCCccCC
Confidence            334567899999999999998854   456888899999888753 3334433


No 26 
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=36.22  E-value=6.1  Score=28.32  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhH-HHHHHH-HHHHHHHHHhcce-EEecCCCcc
Q 008564          465 EEFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGD-QFALLE-AIVALAILLQNMN-FELVPDQNI  529 (561)
Q Consensus       465 ~~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~lA~~~-~~~~la~ll~~f~-~~~~~~~~~  529 (561)
                      -+|+||||-.-  .-.-.......+-|+.|+=.|.|. ...... ..--+..+|..|+ ++..+++++
T Consensus        35 ~~YePe~fpgl--i~R~~~pk~t~lIF~SGKivitGaks~~~~~~a~~~i~~~L~~~~~~~~~~~~~~  100 (101)
T d1mp9a2          35 NMYEPEQFPGL--IYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVKPVEEEEL  100 (101)
T ss_dssp             EECCTTTCSSE--EEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEECTTSCCC
T ss_pred             CEECcccCCeE--EEEecCCcEEEEEEcCCEEEEEccCCHHHHHHHHHHHHHHHHHhCCCCcCCcccC
Confidence            36899998311  001122345788999999999984 443333 2234456777786 666555443


No 27 
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.18  E-value=38  Score=21.96  Aligned_cols=43  Identities=12%  Similarity=0.182  Sum_probs=32.5

Q ss_pred             cchHHHHHHHHHhCCeEEEccC---------CceEEEEeCHHHHHHHHhhCC
Q 008564           90 ALFLPLFKWMNVYGPIYRLAAG---------PRNFVVVSDPAIAKHVLRNYG  132 (561)
Q Consensus        90 ~~~~~l~~~~~kyGpV~ri~lg---------~~~~vvv~dp~~i~~il~~~~  132 (561)
                      .-.+.+.++.++||+|..+.+.         +.-+|-..+++.++.++...+
T Consensus        11 ~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~   62 (75)
T d1hd0a_          11 TTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE   62 (75)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCC
Confidence            3456788999999999877642         235788899999999986543


No 28 
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.66  E-value=52  Score=21.35  Aligned_cols=43  Identities=7%  Similarity=0.138  Sum_probs=31.2

Q ss_pred             ccchHHHHHHHHHhCCeEEEccCC---------ceEEEEeCHHHHHHHHhhC
Q 008564           89 GALFLPLFKWMNVYGPIYRLAAGP---------RNFVVVSDPAIAKHVLRNY  131 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~lg~---------~~~vvv~dp~~i~~il~~~  131 (561)
                      ..--+.+.+...+||+|..+.+.-         .-+|-..+++.++.++...
T Consensus        10 ~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~   61 (75)
T d1x0fa1          10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK   61 (75)
T ss_dssp             SCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhC
Confidence            334567888999999998776421         2468888888888888543


No 29 
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.22  E-value=23  Score=23.93  Aligned_cols=40  Identities=13%  Similarity=0.013  Sum_probs=31.6

Q ss_pred             chHHHHHHHHHhCCeEEEccCC--ceEEEEeCHHHHHHHHhh
Q 008564           91 LFLPLFKWMNVYGPIYRLAAGP--RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        91 ~~~~l~~~~~kyGpV~ri~lg~--~~~vvv~dp~~i~~il~~  130 (561)
                      -.+.+.++..+||+|..+.+..  .-+|-..+++.++.++..
T Consensus        13 ~~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~   54 (87)
T d3begb1          13 SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK   54 (87)
T ss_dssp             CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhcccccccccccceeeEEeCCHHHHHHHHHH
Confidence            3557888999999998887633  467888899999988853


No 30 
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.17  E-value=23  Score=22.31  Aligned_cols=21  Identities=5%  Similarity=0.175  Sum_probs=14.4

Q ss_pred             hhhhhhchhHHHHHHHHHHHH
Q 008564          371 RNRLLEDCNSLMKAQEEIDRV  391 (561)
Q Consensus       371 ~~~~~~~p~~~~klr~Ei~~~  391 (561)
                      ++-|.++|++.+++.+.|...
T Consensus        38 ~~~L~enpel~~eie~~ire~   58 (60)
T d1u94a2          38 TAWLKDNPETAKEIEKKVREL   58 (60)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHHHHHH
Confidence            334445599998888887654


No 31 
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.52  E-value=52  Score=21.38  Aligned_cols=41  Identities=12%  Similarity=0.045  Sum_probs=31.0

Q ss_pred             cchHHHHHHHHHhCCeEEEccCC--------ceEEEEeCHHHHHHHHhh
Q 008564           90 ALFLPLFKWMNVYGPIYRLAAGP--------RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        90 ~~~~~l~~~~~kyGpV~ri~lg~--------~~~vvv~dp~~i~~il~~  130 (561)
                      --.+.+.++..+||+|..+.+..        .-+|-..+++.++.++..
T Consensus        12 ~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~   60 (78)
T d1no8a_          12 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ   60 (78)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHH
Confidence            34567889999999998877532        346788898888888754


No 32 
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.86  E-value=59  Score=21.53  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhCCeEEEccCC---ceEEEEeCHHHHHHHHhhCCCcc
Q 008564           93 LPLFKWMNVYGPIYRLAAGP---RNFVVVSDPAIAKHVLRNYGTKY  135 (561)
Q Consensus        93 ~~l~~~~~kyGpV~ri~lg~---~~~vvv~dp~~i~~il~~~~~~~  135 (561)
                      ..+.+...+||+|..+.++.   .-+|-..+++.++..+..++..+
T Consensus        18 ~~il~~F~~~G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~~nG~~~   63 (81)
T d1wwha1          18 SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIF   63 (81)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEE
T ss_pred             HHHHHHHHhhhhhheEEecCCCCEEEEEEcccHHHHHHHhcCCCeE
Confidence            34556688999999998753   34566789999999986555444


No 33 
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.25  E-value=30  Score=23.19  Aligned_cols=43  Identities=9%  Similarity=0.017  Sum_probs=31.7

Q ss_pred             cchHHHHHHHHHhCCeEEEccC-----C----ceEEEEeCHHHHHHHHhhCC
Q 008564           90 ALFLPLFKWMNVYGPIYRLAAG-----P----RNFVVVSDPAIAKHVLRNYG  132 (561)
Q Consensus        90 ~~~~~l~~~~~kyGpV~ri~lg-----~----~~~vvv~dp~~i~~il~~~~  132 (561)
                      .-.+.+.++.++||+|..+.+.     +    .-+|...+++.++.++...+
T Consensus        18 ~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~   69 (84)
T d1l3ka1          18 TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP   69 (84)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCC
Confidence            3467788999999999776541     2    24688889999999986543


No 34 
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.13  E-value=47  Score=23.30  Aligned_cols=38  Identities=11%  Similarity=0.111  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhCCeEEEccC--------CceEEEEeCHHHHHHHHhh
Q 008564           93 LPLFKWMNVYGPIYRLAAG--------PRNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        93 ~~l~~~~~kyGpV~ri~lg--------~~~~vvv~dp~~i~~il~~  130 (561)
                      +.+.++.++||+|..+.+.        |.-+|-..+.+.++.++..
T Consensus        42 d~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~   87 (104)
T d1jmta_          42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID   87 (104)
T ss_dssp             HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHH
Confidence            4577788999999998762        2246777788888887753


No 35 
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.32  E-value=27  Score=24.77  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             chHHHHHHHHHhCCeEEEccC-----CceEEEEeCHHHHHHHHhh
Q 008564           91 LFLPLFKWMNVYGPIYRLAAG-----PRNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        91 ~~~~l~~~~~kyGpV~ri~lg-----~~~~vvv~dp~~i~~il~~  130 (561)
                      -.+.|.+...+||+|.++.+.     +.-+|-..+++.+..++..
T Consensus        20 te~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~   64 (108)
T d2adba1          20 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS   64 (108)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHH
Confidence            356788999999999886652     2357888899999888743


No 36 
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.00  E-value=64  Score=22.44  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHhCCeEEEccC----CceEEEEeCHHHHHHHHhh
Q 008564           92 FLPLFKWMNVYGPIYRLAAG----PRNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg----~~~~vvv~dp~~i~~il~~  130 (561)
                      .+.|.++..+||+|..+.+.    +.-+|...+++.+..++..
T Consensus        17 e~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~   59 (109)
T d2adca1          17 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH   59 (109)
T ss_dssp             HHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHH
Confidence            56799999999999998753    2478999999999988854


No 37 
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.12  E-value=29  Score=22.71  Aligned_cols=47  Identities=15%  Similarity=0.097  Sum_probs=32.8

Q ss_pred             ccchHHHHHHHHHhCCeEEEccC-----C----ceEEEEeCHHHHHHHHhhCCCcc
Q 008564           89 GALFLPLFKWMNVYGPIYRLAAG-----P----RNFVVVSDPAIAKHVLRNYGTKY  135 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~lg-----~----~~~vvv~dp~~i~~il~~~~~~~  135 (561)
                      ..-.+.+.++.++||+|..+.+.     +    .-+|...+++++..++..++..+
T Consensus        13 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l   68 (79)
T d1l3ka2          13 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV   68 (79)
T ss_dssp             TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEE
T ss_pred             cCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEE
Confidence            33466788999999998766531     1    24577789999999987654333


No 38 
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.05  E-value=4.7  Score=28.84  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccccCCCCCCChhH
Q 008564          466 EFLPERFDLEGPMPNESNTDFRFIPFSGGPRKCVGD  501 (561)
Q Consensus       466 ~F~P~R~l~~~~~~~~~~~~~~~~~Fg~G~r~C~G~  501 (561)
                      +|+||||-.-  .-.........+-|+.|+=.|.|.
T Consensus        35 eYePe~fpgl--i~R~~~P~~t~lIF~SGKivitGa   68 (99)
T d1qnaa1          35 EYNPKRFAAV--IMRIREPKTTALIFASGKMVCTGA   68 (99)
T ss_dssp             EECTTTCSEE--EEEETTTTEEEEEETTSEEEEEEE
T ss_pred             EECcccCCEE--EEEeCCCcEEEEEEcCCEEEEecc
Confidence            5899998310  001122456789999999999984


No 39 
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.78  E-value=55  Score=22.20  Aligned_cols=39  Identities=15%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHhCCeEEEccCC---------ceEEEEeCHHHHHHHHhh
Q 008564           92 FLPLFKWMNVYGPIYRLAAGP---------RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg~---------~~~vvv~dp~~i~~il~~  130 (561)
                      ...+.++..+||+|..+.+..         .-+|-..+.+.+..++..
T Consensus        23 ~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~   70 (93)
T d1x5ua1          23 EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI   70 (93)
T ss_dssp             HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHH
Confidence            567888999999998886521         247889999999999865


No 40 
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.75  E-value=52  Score=22.61  Aligned_cols=39  Identities=26%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHhCCeEEEccCC---------ceEEEEeCHHHHHHHHhh
Q 008564           92 FLPLFKWMNVYGPIYRLAAGP---------RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg~---------~~~vvv~dp~~i~~il~~  130 (561)
                      .+.+.++..+||+|..+.+..         .-+|...+.+.+...+..
T Consensus        22 ~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~   69 (99)
T d1whwa_          22 EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE   69 (99)
T ss_dssp             HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHH
Confidence            567888889999998887632         236888899999988864


No 41 
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.67  E-value=32  Score=23.07  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHhCCeEEEccC--------CceEEEEeCHHHHHHHHhhCCCcc
Q 008564           92 FLPLFKWMNVYGPIYRLAAG--------PRNFVVVSDPAIAKHVLRNYGTKY  135 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg--------~~~~vvv~dp~~i~~il~~~~~~~  135 (561)
                      -+.+.++..+||+|..+.+.        |.-+|-..+++.++.++...+..+
T Consensus        20 e~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~   71 (85)
T d1zh5a2          20 LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY   71 (85)
T ss_dssp             HHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEE
T ss_pred             HHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEE
Confidence            45788889999998887652        123688889999999986544333


No 42 
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.51  E-value=75  Score=21.63  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             ccchHHHHHHHHHhCCeEEEccCC---ceEEEEeCHHHHHHHHhh
Q 008564           89 GALFLPLFKWMNVYGPIYRLAAGP---RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~lg~---~~~vvv~dp~~i~~il~~  130 (561)
                      ..-.+.+.++..+||+|.++.+..   .-+|-..+++.++.++..
T Consensus        29 ~~te~~L~~~F~~fG~i~~v~i~~~kg~afV~f~~~~~A~~Ai~~   73 (96)
T d1x4ga1          29 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS   73 (96)
T ss_dssp             CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCceEEEEEecceEEEEEECCHHHHHHHHHH
Confidence            334567889999999999887633   356777888888887743


No 43 
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.07  E-value=46  Score=22.96  Aligned_cols=42  Identities=14%  Similarity=0.054  Sum_probs=32.6

Q ss_pred             ccchHHHHHHHHHhCCeEEEccCC--ceEEEEeCHHHHHHHHhh
Q 008564           89 GALFLPLFKWMNVYGPIYRLAAGP--RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        89 ~~~~~~l~~~~~kyGpV~ri~lg~--~~~vvv~dp~~i~~il~~  130 (561)
                      ..-.+.|.++..+||.|..+.+..  .-+|-..+++.++.++..
T Consensus        26 ~~~~~~L~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~   69 (98)
T d1wg4a_          26 SGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRK   69 (98)
T ss_dssp             SCCHHHHHHHHTTSSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcccccccccccceEEEEECCHHHHHHHHHH
Confidence            444667889999999998877633  457888899999998864


No 44 
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72  E-value=40  Score=22.50  Aligned_cols=40  Identities=10%  Similarity=0.130  Sum_probs=30.6

Q ss_pred             chHHHHHHHHHhCCeEEEccC---------CceEEEEeCHHHHHHHHhh
Q 008564           91 LFLPLFKWMNVYGPIYRLAAG---------PRNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        91 ~~~~l~~~~~kyGpV~ri~lg---------~~~~vvv~dp~~i~~il~~  130 (561)
                      -.+.+.++..+||+|..+.+.         +.-+|-..+++.+...+..
T Consensus        14 te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~   62 (85)
T d2u2fa_          14 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG   62 (85)
T ss_dssp             CSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHH
Confidence            356788899999999887652         2346888899999888864


No 45 
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.49  E-value=42  Score=22.02  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHhCCeEEEccC-----C----ceEEEEeCHHHHHHHHhh
Q 008564           92 FLPLFKWMNVYGPIYRLAAG-----P----RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        92 ~~~l~~~~~kyGpV~ri~lg-----~----~~~vvv~dp~~i~~il~~  130 (561)
                      .+.+.++..+||+|..+.+.     +    .-+|-..+++.+..++..
T Consensus        14 e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~   61 (80)
T d1cvja1          14 EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT   61 (80)
T ss_dssp             HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHH
Confidence            55788888999998877642     2    335788899999998854


No 46 
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.19  E-value=94  Score=21.06  Aligned_cols=41  Identities=10%  Similarity=0.122  Sum_probs=32.3

Q ss_pred             cchHHHHHHHHHhCCeEEEccCC---ceEEEEeCHHHHHHHHhh
Q 008564           90 ALFLPLFKWMNVYGPIYRLAAGP---RNFVVVSDPAIAKHVLRN  130 (561)
Q Consensus        90 ~~~~~l~~~~~kyGpV~ri~lg~---~~~vvv~dp~~i~~il~~  130 (561)
                      --.+.+.++.++||+|..+.+..   .-+|-..+.+.+..++..
T Consensus        29 ~t~~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~A~~~   72 (97)
T d1whya_          29 TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK   72 (97)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcccceEeeeccccEEEeccCCHHHHHHHHHH
Confidence            34567999999999999887643   357888899998888854


Done!