Query 008565
Match_columns 561
No_of_seqs 189 out of 2554
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3E-30 1E-34 275.4 30.5 439 32-548 10-477 (491)
2 2xut_A Proton/peptide symporte 100.0 2.7E-30 9.4E-35 278.1 21.9 469 33-553 10-513 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 2.7E-28 9.4E-33 256.8 27.2 399 34-545 27-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 7.2E-26 2.5E-30 237.4 29.5 355 33-506 24-407 (438)
5 4gc0_A D-xylose-proton symport 99.9 6E-27 2.1E-31 249.7 18.4 405 70-559 54-479 (491)
6 2gfp_A EMRD, multidrug resista 99.9 6.9E-24 2.4E-28 217.9 23.1 345 38-505 3-351 (375)
7 2cfq_A Lactose permease; trans 99.9 1.4E-23 4.9E-28 219.2 8.7 391 35-544 7-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 7.7E-14 2.7E-18 146.1 18.7 180 34-225 251-434 (451)
9 3o7q_A L-fucose-proton symport 99.5 2.1E-13 7.3E-18 142.3 17.7 167 35-218 258-426 (438)
10 2cfq_A Lactose permease; trans 99.5 3.3E-13 1.1E-17 140.5 15.4 178 35-226 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 6.9E-12 2.4E-16 133.0 14.0 184 37-228 285-475 (491)
12 4gc0_A D-xylose-proton symport 99.2 2.3E-10 7.9E-15 121.2 17.8 184 37-231 278-469 (491)
13 2gfp_A EMRD, multidrug resista 99.1 2.5E-11 8.7E-16 123.9 2.9 162 35-211 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 2.4E-07 8.2E-12 98.7 5.0 149 72-227 336-505 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3e-30 Score=275.38 Aligned_cols=439 Identities=21% Similarity=0.289 Sum_probs=289.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhhhHHHHHHHHHHHHhhhHHHHHhhh-ccCchHHH
Q 008565 32 GGWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNV-----LNEPTATAAQDVNNWVGISSIFPLLGAFVADS-YLGRFNTI 105 (561)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grk~~~ 105 (561)
+++|..+.+....++..+++|++.++++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~ 88 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV 88 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence 4567788888999999999999999999999988 99999999999999999999999999999999 7 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH
Q 008565 106 LLSSFIYFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF 185 (561)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 185 (561)
.++.++.+++.+++.++ ++.+.+++.|++.|++.+...+...++++|.+|+++.+ |+.+++.++.+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~ 157 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP-------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINL 157 (491)
T ss_dssp HHHHHHHHHHHHHHHSC-------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHH
Confidence 99999999999988887 68889999999999999999999999999999987632 66678889999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccC---CCC-CchhHHHHHHHH-------------H
Q 008565 186 GASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQA---PVG-SPFTTVAQVFVA-------------T 248 (561)
Q Consensus 186 G~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-------------~ 248 (561)
|..++|.+++++.+..||++.|++.++..+++.+..+...++..+++ ++. ....+..+.... .
T Consensus 158 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 237 (491)
T 4aps_A 158 GAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVV 237 (491)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777766666554443322211 111 111111110000 0
Q ss_pred HhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHH
Q 008565 249 ARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLV 328 (561)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
..... +. + .++................ ....|+... ....++++.
T Consensus 238 ~~~~~---------------~~--------------~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~ 282 (491)
T 4aps_A 238 MNLVG---------------WN--------------S--LPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRV 282 (491)
T ss_dssp HHHHS---------------SC--------------C--TTHHHHHHHHHHHHHHHHH---HHHHC-------------C
T ss_pred HHhcc---------------Cc--------------c--cccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHH
Confidence 00000 00 0 0000000000000000000 000011000 111223333
Q ss_pred HHHHHHHHHHHHHHHHHhhccchheeeccc-ccccCCCceeeccccccchhhHHHHHHHHH----hhcCCCC-CCchhHH
Q 008565 329 IRLIPIWLSCLMFSCILVQLHTFFTKQGST-MRRSIGSNFQVPPASLQSLVGLSILVAVPV----ITGHRSG-ITMLQRI 402 (561)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~i 402 (561)
.....+++....++..+.+..+.+..+... .... ....+.....+.+..++..++ .+|..+| ......+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 344455556666666666655543333211 1111 123445555666666665555 3344332 2345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHH
Q 008565 403 GIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGA 482 (561)
Q Consensus 403 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~ 482 (561)
..+..+..++++++.+..... + ...+.+.++..+.+++.+++.+...|..++++.|..|++.||+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 688888888877766543110 0 001245667778888999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008565 483 AAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVY 548 (561)
Q Consensus 483 g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 548 (561)
|++++...+|..+++.+.+.+.+. +....|+..+++++++.++.++..++.++
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888652 22346777777777777776666555443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=2.7e-30 Score=278.08 Aligned_cols=469 Identities=25% Similarity=0.379 Sum_probs=282.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLN------EPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL 106 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~ 106 (561)
++|.++.+.+..++..+++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34556677888999999999999999999999999 999999999999999999999999999999449999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc-hhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhh---HHHHHHH
Q 008565 107 LSSFIYFMGMVLLSLAVSVIPLHY-RKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSF---FNWWYLG 182 (561)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~ 182 (561)
++.++.+++.+++.++ . +.+.+++.|++.|++.+...+...++++|.+|+++ |++. ++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF-------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHH
Confidence 9999999999888887 5 78889999999999999999999999999999988 7554 4558999
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCC
Q 008565 183 IVFGASAAVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGR 262 (561)
Q Consensus 183 ~~lG~~igp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (561)
.++|..++|.+++++.+..||++.|++.++..+++.+..+...++.+++++++++..+..+......+++....+ ...
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 234 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIG- 234 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHH-
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccc-
Confidence 999999999999999988999999998887776666555444443333222222111111111000010000000 000
Q ss_pred ccccCCCCCCCcccccccccccccccccch---------hhhhhhhhhcccccccccCCCC-------cccchhhhHHHH
Q 008565 263 GIYHGHELDDDDKRTDIGQSKRTIARTNQL---------RFLDKAMIIDEIDLASRERNPW-------RLCSLNQVEEVK 326 (561)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 326 (561)
.+. +.. .... . .......+.. .+.+.++. ...+| +.+.....++++
T Consensus 235 ~~~---~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 235 LVL---ALI---GGVS-A--AYALVNIPTLGIVAGLCCAMVLVMGFV---------GAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp HHH---HHH---HHHH-H--HHTGGGTTTTCSSHHHHHHHHHHHHHH---------HTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred hhh---hhh---hhhh-h--hhhhcccchhhhhhhhhhhhhhhhccc---------ccchhhHHhhhhccccHhHHHHHH
Confidence 000 000 0000 0 0000000000 00000000 00111 000001112233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcC--------CCCCCc
Q 008565 327 LVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGH--------RSGITM 398 (561)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 398 (561)
+.......+.....++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.++. .++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA 372 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh
Confidence 333344444444555555555444444333222211 10 133445555666666666664442 223344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHH
Q 008565 399 LQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMR 478 (561)
Q Consensus 399 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r 478 (561)
.+.+.+|+++..++++.+.+.+.. .+ .....+.+++++.+++.+++.+...|..++++.|.+|++.|
T Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 373 LRKMGAGIAITGLSWIVVGTIQLM----------MD---GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTTTTTTT----------TT---TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hc---CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 556677877777776665442100 00 00123556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008565 479 SIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVD-NLNRAHLDYFYWVLAGLSALNLCVFIWIAKRFVYKKVLE 553 (561)
Q Consensus 479 g~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 553 (561)
|+++|++++...+|+.+++.+.+.+.+.+..+|.+. +.+ .....|++.+++++++.++++++.++.+.++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 999999999999999999999999876321123211 011 1123377788888888887777766655544433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=2.7e-28 Score=256.78 Aligned_cols=399 Identities=11% Similarity=0.023 Sum_probs=256.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
++.++.+....+...+..+...+.+|.+. +++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 34455566666777777666677777665 456 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----hhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSL----AVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 114 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
++.+++.+ . ++.+.+++.|++.|++.+...+...++++|.+|+++ |++++++.+.+.++|..+
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~ 170 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGI 170 (451)
T ss_dssp HHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhhhcc-------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHH
Confidence 99999988 6 688899999999999999999999999999999888 999999999999999999
Q ss_pred HHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCC
Q 008565 190 AVLVAIYLQDNVG-WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGH 268 (561)
Q Consensus 190 gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (561)
+|.+++++.+..| |++.|++.++..++..+..++..++.+.+....+. +
T Consensus 171 g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------------- 220 (451)
T 1pw4_A 171 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E----------------------------- 220 (451)
T ss_dssp HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-----------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-----------------------------
Confidence 9999999888888 99999998877766655554444432221110000 0
Q ss_pred CCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 269 ELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLC-SLNQVEEVKLVIRLIPIWLSCLMFSCILVQ 347 (561)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (561)
+.+. +.. ++....++ ....++.. .....++++.....+........++.....
T Consensus 221 ~~~~-~~~-------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 221 EYKN-DYP-------DDYNEKAE------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp TTCC-C--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcc-ccc-------ccchhhhh------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 00000000 00000000 000001111111111111122222222221
Q ss_pred ccchheeecccccccCCCceee-ccccccchhhHHHHHHHHHhhcCCCCC--CchhHHHHHHHHHH-HHHHHHHHHHHHH
Q 008565 348 LHTFFTKQGSTMRRSIGSNFQV-PPASLQSLVGLSILVAVPVITGHRSGI--TMLQRIGIGLFTSI-LTMIVAALVEAKR 423 (561)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~g~~~~~-~~~~~~~~~~~~~ 423 (561)
.+.+ .. ... +++. ..+.......++.++..++..+..+|. ++++.+..+..+.. ++++.+.+.
T Consensus 275 ~~~~-~~------~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 275 SPTY-LK------EVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp HHHH-BT------TBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHH-HH------Hhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence 1111 11 111 1111 122333334444444444433333333 44455555555444 444433221
Q ss_pred HHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhh-hhhhhhHHHhh
Q 008565 424 VRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGV-GSFINTGVIEV 502 (561)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~-g~~lg~~v~~~ 502 (561)
...+.+......++.|++.....+..+.+..|..|++.||++.|+.+....+ |..+++.+.+.
T Consensus 342 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 342 ----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124455666677788888888888899999999999999999999999999 99999999999
Q ss_pred hcccccCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008565 503 VEAITHRSWLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAKR 545 (561)
Q Consensus 503 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 545 (561)
+.+.. ++...|++.+++.+++.++.+...++
T Consensus 406 l~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 406 TVDFF------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHSS------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98732 23557777788888877776665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=7.2e-26 Score=237.43 Aligned_cols=355 Identities=14% Similarity=0.048 Sum_probs=233.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHH
Q 008565 33 GWNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIY 112 (561)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~ 112 (561)
+++.++.+....++..+......+.+|. +++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 4445555666666677776666666665 5678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHH---HHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 113 FMGMVLL---SLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 113 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
+++.+++ .+. ++.+.+++.|++.|++.+...+...++++|.+|+++ |++++++.+...++|..+
T Consensus 102 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~ 168 (438)
T 3o7q_A 102 ALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAII 168 (438)
T ss_dssp HHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHH
Confidence 9999888 555 689999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhh-cccc-------------------------chHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHH
Q 008565 190 AVLVAIYLQ-DNVG-------------------------WAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQ 243 (561)
Q Consensus 190 gp~l~g~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (561)
+|.+++++. +..+ |++.|++.++..++..+..+..+. +++++++
T Consensus 169 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~-------- 238 (438)
T 3o7q_A 169 AVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDN-------- 238 (438)
T ss_dssp HHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTC--------
T ss_pred HHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccc--------
Confidence 999999988 5554 899997776655554444333211 1110000
Q ss_pred HHHHHHhhcccccCCCCCCccccCCCCCCCcccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhH
Q 008565 244 VFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVE 323 (561)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (561)
+.++ +..+ ..+. ++ .-.+
T Consensus 239 -------------------------~~~~--~~~~---------------~~~~----------------~~----~~~~ 256 (438)
T 3o7q_A 239 -------------------------HSDA--KQGS---------------FSAS----------------LS----RLAR 256 (438)
T ss_dssp -------------------------CCCS--STTS---------------HHHH----------------HH----HHTT
T ss_pred -------------------------cccc--cccc---------------hhhh----------------HH----HHHh
Confidence 0000 0000 0000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHH
Q 008565 324 EVKLVIRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIG 403 (561)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (561)
+++.........+............+.++.......+. ...+.......++.++..++..+..+|.++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 01111111111111222222222222220111101111 11223333334444444444444344456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHH
Q 008565 404 IGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAA 483 (561)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 483 (561)
.+.++..++++.+.+. +........++.+++.+...|..+++..|..|++ ++.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (438)
T 3o7q_A 330 AYALIAMALCLISAFA-----------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHH
T ss_pred HHHHHHHHHHHHHHHc-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Confidence 7777777766655542 1122344457778888888999999999999987 899999
Q ss_pred HHHHHhhhhhhhhhHHHhhhccc
Q 008565 484 AYISIIGVGSFINTGVIEVVEAI 506 (561)
Q Consensus 484 ~~~~~~~~g~~lg~~v~~~i~~~ 506 (561)
+.. .+.+|..++|.+.+.+.+.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH
Confidence 877 7789999999999999873
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=6e-27 Score=249.68 Aligned_cols=405 Identities=13% Similarity=0.089 Sum_probs=225.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhc-----------ccccchhHHHHHH
Q 008565 70 TATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMVLLSLAVSV-----------IPLHYRKAVFFTA 138 (561)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~ 138 (561)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++.+.... ....++...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 35578899999999999999999999997 99999999999999999988853100 0012688999999
Q ss_pred HHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchHHHHHH
Q 008565 139 LYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDN--------VGWAVGFGVM 210 (561)
Q Consensus 139 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~--------~g~~~~f~~~ 210 (561)
|+++|+|.|...+..+++++|..|++. |++..+..+.+..+|..+++.++..+... .+|+..+.+.
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence 999999999999999999999999999 99999999999999999998887766532 2356555544
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCccccccccccccccccc
Q 008565 211 AGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRTDIGQSKRTIARTN 290 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 290 (561)
.+..++.++..+. .|+.+.--..+.+.++..+.......+ ...
T Consensus 207 ~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~~~~~~------------------------------------~~~ 249 (491)
T 4gc0_A 207 CIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGN------------------------------------TLA 249 (491)
T ss_dssp HHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHHHHHHH------------------------------------HHH
T ss_pred hhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHHHhcCC------------------------------------chh
Confidence 4443333332221 111110000000001100000000000 000
Q ss_pred chhhhhhhhhhcccccccccCCCCcccchhhhHHHHHH-HHHHHHHHHHHHHHHHHhhccchheeecccccccCCCceee
Q 008565 291 QLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLV-IRLIPIWLSCLMFSCILVQLHTFFTKQGSTMRRSIGSNFQV 369 (561)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (561)
+.+..+........ +....+ ......++. ......+............+.+.+.. ..+ ....
T Consensus 250 ~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~ 312 (491)
T 4gc0_A 250 TQAVQEIKHSLDHG-----RKTGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHH-----HHHTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHH
T ss_pred HHHHHHHHHHHHhh-----hhhhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCcc
Confidence 00000000000000 000000 000000111 11111111111000000111111111 100 0000
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccchhhhHHh
Q 008565 370 PPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENGLIDSPKAIVPISIWWLLP 449 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (561)
..........+..++...+.....+|.++++....+.....++++.++.... ...+.+..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~ 374 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHH
Confidence 0111111222222222222222222344456666777777776666554321 0112222222
Q ss_pred HHHHHHHhh-hhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcccccCCcccCCCccchhHHHHHHH
Q 008565 450 QYLLVSICD-VFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEAITHRSWLVDNLNRAHLDYFYWVL 528 (561)
Q Consensus 450 ~~~l~g~g~-~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (561)
..++...+. ....|..+.+..|..|.+.|++++|+.+..+++++.+++.+.+.+.+.. |... ..+....|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---~~~~---~~~~~~~~~i~ 448 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---WLVA---HFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---HHHH---HHTTCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh---hhhhhHHHHHH
Confidence 223332222 2335778899999999999999999999999999999999998876521 1100 01123467888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccccc
Q 008565 529 AGLSALNLCVFIWIAKRFVYKKVLEDESKEE 559 (561)
Q Consensus 529 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (561)
+++++++.++.+++.+|+|+|+.||.|+..|
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 9999999999999999999999998765443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=6.9e-24 Score=217.93 Aligned_cols=345 Identities=10% Similarity=0.071 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008565 38 IFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMGMV 117 (561)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~~~ 117 (561)
+.+....++..+......+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345566677777777777777775 467999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008565 118 LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYL 197 (561)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l 197 (561)
+..+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+....+|..++|.+++++
T Consensus 81 ~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 81 VAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 98888 688899999999999999999999999999999988 99999999999999999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCCcccc
Q 008565 198 QDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDDDKRT 277 (561)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (561)
.+..||+..|++.++..++..+......|+. +++++ +.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------------~~~------ 186 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDA--------------------------------PRT------ 186 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTC--------------------------------CCC------
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCc--------------------------------ccc------
Confidence 9988999999887766555443222222211 11000 000
Q ss_pred cccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhccchheeec
Q 008565 278 DIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRL-IPIWLSCLMFSCILVQLHTFFTKQG 356 (561)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (561)
+ ..++++ +..++ |..... .........+.......+.++.. .
T Consensus 187 ~-------------------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 229 (375)
T 2gfp_A 187 R-------------------------------LLTSYK----TLFGN-SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-V 229 (375)
T ss_dssp C-------------------------------TTTCST----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-H
T ss_pred c-------------------------------HHHHHH----HHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 001110 11111 222211 11111111222221111111111 0
Q ss_pred ccccccCCCceeeccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHH-HHHHHH--HHHHHHHHHHHHhhhcCCC
Q 008565 357 STMRRSIGSNFQVPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFT-SILTMI--VAALVEAKRVRTARENGLI 433 (561)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 433 (561)
...+. ...+.......++.++..++..+..+|.++ ++..+..+ ...+.. ......
T Consensus 230 ~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~------------- 287 (375)
T 2gfp_A 230 LGLSS-------MTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFG------------- 287 (375)
T ss_dssp HHHHH-------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHHH-------------
T ss_pred hCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc-------------
Confidence 01111 112234444556666666666666554433 33333333 222222 111110
Q ss_pred CCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhhcc
Q 008565 434 DSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAAYISIIGVGSFINTGVIEVVEA 505 (561)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~g~~lg~~v~~~i~~ 505 (561)
..+.+......++.+++.+...|...++..|..| +.||++.|+.+....+|..+++.+.+.+.+
T Consensus 288 -------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 -------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556667788899999999999999999998 889999999999999999999999988865
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=1.4e-23 Score=219.18 Aligned_cols=391 Identities=8% Similarity=-0.059 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFM 114 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~ 114 (561)
|..+.+....++..+++....+++|.|+++++|++..+.|++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777889999999998999999999999999999999999999999997 999999988777654
Q ss_pred HHHHHHHhhhcccccchh-HHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 115 GMVLLSLAVSVIPLHYRK-AVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
+...+...... ... ..+...+++.+++.+...+...+...+..++..+ .|+..++..+...++|..++|.+
T Consensus 86 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~g~~~~~~l 157 (417)
T 2cfq_A 86 MFAPFFIFIFG----PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp CHHHHHHHTHH----HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHHHSSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHHHHHHHHHHHHHHHHH
Confidence 32222111000 000 0122344444444443333434444444433210 05666777777888999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccCCCCCCccccCCCCCCC
Q 008565 194 AIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRYRKQAPVGSPFTTVAQVFVATARKWRVSETHGGGRGIYHGHELDDD 273 (561)
Q Consensus 194 ~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (561)
++++.+ .+|+..|++.++..++..+..+...++ +++..+ +.+++
T Consensus 158 ~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------------~~~~~ 201 (417)
T 2cfq_A 158 VGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT-------------------------------VANAV 201 (417)
T ss_dssp HHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC-------------------------------SSSSS
T ss_pred HHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc-------------------------------ccccc
Confidence 999887 579998887665433332222111111 110000 00000
Q ss_pred cccccccccccccccccchhhhhhhhhhcccccccccCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchh
Q 008565 274 DKRTDIGQSKRTIARTNQLRFLDKAMIIDEIDLASRERNPWRLCSLNQVEEVKLVIRLIPIWLSCLMFSCILVQL-HTFF 352 (561)
Q Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 352 (561)
+ ..+ ++.+..+.. +..++ +...............+..+.+. +.++
T Consensus 202 ~-~~~-----------~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2cfq_A 202 G-ANH-----------SAFSLKLAL---------------------ELFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFF 247 (417)
T ss_dssp S-SCC-----------CCCCHHHHH---------------------HHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccc-----------ccccHHHHH---------------------HHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000000000 00011 11111111111111111222222 2222
Q ss_pred eeecccccccCCCcee-eccccccchhhHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008565 353 TKQGSTMRRSIGSNFQ-VPPASLQSLVGLSILVAVPVITGHRSGITMLQRIGIGLFTSILTMIVAALVEAKRVRTARENG 431 (561)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (561)
... .... +.. ...+....++.+..++..++..+..+|.++++.+..+..+..++++.+.+.
T Consensus 248 ~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 248 TSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 111 1100 000 001222333333333344443343444555666666776666655444321
Q ss_pred CCCCCCCcccchhhhHHhHHHHHHHhhhhhhhhhHHHHhhhcchhHHHHHHHH-HHHHhhhhhhhhhHHHhhhcccccCC
Q 008565 432 LIDSPKAIVPISIWWLLPQYLLVSICDVFGIVGLQELFYDQMPEAMRSIGAAA-YISIIGVGSFINTGVIEVVEAITHRS 510 (561)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~g~~lg~~v~~~i~~~~~~~ 510 (561)
.+.+.++...++.+++.....+....++.|..|++.||++.++ +++.+++|+.++|.+.|.+.+.
T Consensus 310 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---- 375 (417)
T 2cfq_A 310 ----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---- 375 (417)
T ss_dssp ----------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH----
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh----
Confidence 1233444445556666666667778899999999999999999 5888899999999999988762
Q ss_pred cccCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008565 511 WLVDNLNRAHLDYFYWVLAGLSALNLCVFIWIAK 544 (561)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 544 (561)
.++...|.+.+++++++.++.++..+
T Consensus 376 --------~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 376 --------IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred --------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12345677777777777766554444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=7.7e-14 Score=146.12 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhcc--CchHHHHHHHHH
Q 008565 34 WNAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYL--GRFNTILLSSFI 111 (561)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grk~~~~~~~~~ 111 (561)
.|.++.+++..++..+..+++..++|.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567777888888889999999999999998899999999999999999999999999999999 5 888888777666
Q ss_pred HH-HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHH-HHHH
Q 008565 112 YF-MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVF-GASA 189 (561)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~i 189 (561)
.. ++.+++.+. ...+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++.+...++ |..+
T Consensus 330 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 330 LVTIATIVYWMN-----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp HHHHHHHHTTSC-----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHHHHH
Confidence 55 444444333 11256666777778888888888888899999999988 99999999999999 9999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhc
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGI 225 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (561)
+|.+.|++.+..||+..|++.++..+++.+..+...
T Consensus 399 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 399 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.52 E-value=2.1e-13 Score=142.28 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQY-LTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~ 113 (561)
|.++...+..++.....+++..++|.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666677777778888889999999 8888899999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008565 114 MGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLV 193 (561)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l 193 (561)
++.+++.+. ++...+ ...++.+++.+...|...++..|.+|++ ++.+.++.. ...+|..++|.+
T Consensus 337 ~~~~~~~~~-------~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 337 ALCLISAFA-------GGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHC-------CHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHc-------CCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHH
Confidence 887777766 344433 3447788888888899999999998854 555556554 566999999999
Q ss_pred HHHhhcccc-chHHHHHHHHHHHHHH
Q 008565 194 AIYLQDNVG-WAVGFGVMAGALALAL 218 (561)
Q Consensus 194 ~g~l~~~~g-~~~~f~~~~~~~~i~~ 218 (561)
.|++.+..| ++..|++.++..++..
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999988 9999887665544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.48 E-value=3.3e-13 Score=140.46 Aligned_cols=178 Identities=10% Similarity=0.067 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNE---PTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI 111 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~ 111 (561)
|..+......+.....++....++|.|+.+.++. +....+...++..++..++.++.|+++||+ |||+++..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444555566667789998776553 234457777777888889999999999997 999999888777
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHH-HHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNW-WYLGIVFGASAA 190 (561)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ig 190 (561)
.+++.+++.+. ++.+.+++...+.+++.+...+....+++|.+|++. |+++.+. ++....+|..++
T Consensus 299 ~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 299 MSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHh
Confidence 77665555444 355566666667777766666777889999999998 9999998 578888999999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcc
Q 008565 191 VLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIK 226 (561)
Q Consensus 191 p~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (561)
|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 366 p~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998888988998888777776665544333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=6.9e-12 Score=133.00 Aligned_cols=184 Identities=8% Similarity=0.029 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHH-----HHHHH
Q 008565 37 AIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTIL-----LSSFI 111 (561)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~-----~~~~~ 111 (561)
.+.+....++....+.....+++.|.++.++.+..+.+++.+...++..++.++.|+++||+ |||+... .+..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445555556666667778899999988888878889999999999999999999999997 9886544 56666
Q ss_pred HHHHHHHHHHhhhc--ccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHH
Q 008565 112 YFMGMVLLSLAVSV--IPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASA 189 (561)
Q Consensus 112 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 189 (561)
.+++.+++...... .....+...+.+..++.|++.+...+...+++.|.+|++. |+++.++.+...++|..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence 66665555443100 0111255666777788999999888999999999999999 999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccc
Q 008565 190 AVLVAIYLQDNVGWAVGFGVMAGALALALAIFLIGIKRY 228 (561)
Q Consensus 190 gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 228 (561)
+|.+.+++.+. ++...|.+.++..+++.+..+...++.
T Consensus 438 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 438 NAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888764 677778777776666666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=2.3e-10 Score=121.16 Aligned_cols=184 Identities=12% Similarity=0.086 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHHHHHH
Q 008565 37 AIFIIMVEMAQRF-AYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFIYFMG 115 (561)
Q Consensus 37 ~~~l~~~~~~~~~-~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~~~~~ 115 (561)
........++..+ +.+.+..+. .++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYA-PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcc-hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 3333333444433 344444444 445567788888888888888889999999999999997 9999999988888777
Q ss_pred HHHHHHhhhcccccchhHHHH-HHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008565 116 MVLLSLAVSVIPLHYRKAVFF-TALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVA 194 (561)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~ 194 (561)
.+.+..... ....+...+. ...+..+++. ...+....+.+|.+|.+. |+++.++.+....+|..+++.+.
T Consensus 356 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 356 MFSLGTAFY--TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554421 1111222222 2222223332 345777889999999999 99999999999999999998887
Q ss_pred HHhhc------cccchHHHHHHHHHHHHHHHHHHHhccccccc
Q 008565 195 IYLQD------NVGWAVGFGVMAGALALALAIFLIGIKRYRKQ 231 (561)
Q Consensus 195 g~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 231 (561)
+.+.+ ..++...|++.++..+++.+..+++.||.+.+
T Consensus 427 p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 427 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 76643 24566778888888888877777777765443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=2.5e-11 Score=123.87 Aligned_cols=162 Identities=8% Similarity=-0.032 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHhhhHHHHHhhhccCchHHHHHHHHH-HH
Q 008565 35 NAAIFIIMVEMAQRFAYYGLAGNLIQYLTNVLNEPTATAAQDVNNWVGISSIFPLLGAFVADSYLGRFNTILLSSFI-YF 113 (561)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grk~~~~~~~~~-~~ 113 (561)
|..+......++.....+....++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777888888889999999999988999999999999999999999999999999997 772 2333332 22
Q ss_pred HHHH--HHHHhhhcccccchhHHHHHHHHHHHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008565 114 MGMV--LLSLAVSVIPLHYRKAVFFTALYILAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAV 191 (561)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 191 (561)
.+.. ...... ..+.+.+++..++.+++.+...+...+++.|.+| ++ |+++.++.+...++|..++|
T Consensus 276 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 276 AGLLMWIPDWFG-----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp TSSSSSHHHHHH-----HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhhhc-----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHHHHHHH
Confidence 2222 111110 0255566677788899999889999999999998 66 99999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHH
Q 008565 192 LVAIYLQDNVGWAVGFGVMA 211 (561)
Q Consensus 192 ~l~g~l~~~~g~~~~f~~~~ 211 (561)
.+.+.+.+..+|+..+++.+
T Consensus 344 ~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 344 SLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp TTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHHHH
Confidence 99999988777877776644
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.34 E-value=2.4e-07 Score=98.73 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHh----hhccCc----hHHHHHHHHHHHHHHHHHHHhhhcc--cccchhHHHHHHHHH
Q 008565 72 TAAQDVNNWVGISSIFPLLGAFVA----DSYLGR----FNTILLSSFIYFMGMVLLSLAVSVI--PLHYRKAVFFTALYI 141 (561)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~ls----Dr~~Gr----k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l 141 (561)
..+.+.....++..+..++.+++. ||. |+ ++.+.+++++.+++.+++.+..... ....+.+.+++..++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYAL 414 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 345555555555566666666654 443 43 2455566666666655554431000 011355667777888
Q ss_pred HHHhccccchhhhhHhhhhcccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc--cc---------hHHHHHH
Q 008565 142 LAVGEGGHKPCVQTFAADQFDERNPKDKGAKSSFFNWWYLGIVFGASAAVLVAIYLQDNV--GW---------AVGFGVM 210 (561)
Q Consensus 142 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~l~g~l~~~~--g~---------~~~f~~~ 210 (561)
.|++.+...+...+++.|.+|++. |++++|+.+...++|..++|.+.+.+.+.. +| +..|++.
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFF 488 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHH
Confidence 999999889999999999999998 999999999999999999999999988742 23 3336666
Q ss_pred HHHHHHHHHHHHHhccc
Q 008565 211 AGALALALAIFLIGIKR 227 (561)
Q Consensus 211 ~~~~~i~~~~~~~~~~~ 227 (561)
++..+++.+..+...++
T Consensus 489 ~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 489 AGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555555554444443
Done!