Query 008566
Match_columns 561
No_of_seqs 128 out of 758
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 06:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2o_A SEC23, protein transpor 100.0 6E-110 2E-114 943.5 46.1 531 2-553 1-550 (768)
2 2nut_A Protein transport prote 100.0 5E-109 2E-113 935.0 49.8 529 1-553 5-548 (769)
3 3eh1_A Protein transport prote 100.0 1.9E-98 6E-103 843.9 43.2 469 6-554 36-524 (751)
4 1pcx_A Protein transport prote 100.0 3.6E-97 1E-101 841.6 41.6 480 6-554 59-558 (810)
5 1m2v_B SEC24, protein transpor 100.0 2.1E-97 7E-102 846.8 37.2 480 6-554 175-674 (926)
6 3efo_B SEC24 related gene fami 100.0 2.9E-96 1E-100 829.1 40.6 481 7-556 44-548 (770)
7 3eh2_A Protein transport prote 100.0 3.9E-96 1E-100 827.7 41.5 476 7-551 40-539 (766)
8 2yrc_A Protein transport prote 99.6 4.3E-17 1.5E-21 121.9 1.8 52 54-105 5-58 (59)
9 4fx5_A VON willebrand factor t 99.1 1.5E-07 5E-12 100.9 32.8 263 128-500 76-347 (464)
10 3ibs_A Conserved hypothetical 98.8 3.1E-07 1.1E-11 87.7 18.4 158 128-384 10-198 (218)
11 4b4t_W RPN10, 26S proteasome r 98.4 2.5E-06 8.5E-11 84.0 14.7 147 131-376 5-163 (268)
12 2b2x_A Integrin alpha-1; compu 98.3 1.2E-05 4.2E-10 77.1 16.7 161 128-386 21-199 (223)
13 1v7p_C Integrin alpha-2; snake 98.3 1.8E-05 6.2E-10 74.5 16.9 161 129-386 6-183 (200)
14 1ijb_A VON willebrand factor; 98.3 4.9E-05 1.7E-09 71.7 19.1 163 128-386 12-183 (202)
15 1shu_X Anthrax toxin receptor 98.3 7.3E-05 2.5E-09 68.8 19.8 160 128-385 5-168 (182)
16 1q0p_A Complement factor B; VO 98.3 2.6E-05 9E-10 74.3 17.3 172 128-385 14-206 (223)
17 1pt6_A Integrin alpha-1; cell 98.3 1.5E-05 5.1E-10 75.9 15.1 162 128-386 6-184 (213)
18 4hqf_A Thrombospondin-related 98.2 2.2E-05 7.5E-10 78.2 16.1 165 128-386 20-197 (281)
19 2x31_A Magnesium-chelatase 60 98.2 1.3E-07 4.5E-12 88.3 -0.3 175 128-398 4-184 (189)
20 1atz_A VON willebrand factor; 98.2 0.00011 3.6E-09 68.4 19.1 158 128-386 4-172 (189)
21 2x5n_A SPRPN10, 26S proteasome 98.2 6.8E-05 2.3E-09 70.4 16.8 145 130-374 3-159 (192)
22 1rrk_A Complement factor B; BB 98.1 3.9E-05 1.3E-09 82.6 16.5 167 130-385 2-192 (497)
23 2odp_A Complement C2; C3/C5 co 98.1 2.9E-05 9.8E-10 84.0 15.0 170 128-385 8-200 (509)
24 3n2n_F Anthrax toxin receptor 98.0 0.00014 4.8E-09 67.0 16.4 159 129-385 7-171 (185)
25 1n3y_A Integrin alpha-X; alpha 98.0 5.3E-05 1.8E-09 70.8 13.0 161 128-385 8-180 (198)
26 4hqo_A Sporozoite surface prot 98.0 0.00037 1.3E-08 68.7 18.8 163 129-385 18-193 (266)
27 1mf7_A Integrin alpha M; cell 97.9 9.6E-05 3.3E-09 68.9 12.6 163 128-386 4-177 (194)
28 3zqk_A VON willebrand factor; 97.8 0.00089 3E-08 62.7 16.9 49 128-176 20-73 (199)
29 1mjn_A Integrin alpha-L; rossm 97.7 0.00058 2E-08 62.9 14.9 154 129-386 2-167 (179)
30 3hrz_D Complement factor B; se 97.7 0.00018 6.1E-09 81.4 12.8 187 129-397 243-444 (741)
31 2xgg_A Microneme protein 2; A/ 97.7 0.0015 5.3E-08 59.9 16.2 143 128-367 16-168 (178)
32 3k6s_A Integrin alpha-X; cell 97.2 0.00053 1.8E-08 80.6 8.3 162 129-386 130-302 (1095)
33 1jey_B KU80; double-strand DNA 97.1 0.003 1E-07 69.1 13.2 44 130-173 8-62 (565)
34 3rag_A Uncharacterized protein 95.8 0.045 1.5E-06 52.5 10.1 45 128-172 133-181 (242)
35 2ww8_A RRGA, cell WALL surface 95.7 0.043 1.5E-06 62.8 11.5 48 128-175 223-280 (893)
36 3fcs_B Integrin beta-3; beta p 95.3 0.66 2.3E-05 51.5 18.7 212 128-382 110-334 (690)
37 3t3p_B Integrin beta-3; integr 94.9 4.4 0.00015 42.6 22.5 210 128-381 110-333 (472)
38 1jey_A KU70; double-strand DNA 94.5 0.65 2.2E-05 51.0 15.9 68 268-360 140-208 (609)
39 1yvr_A RO autoantigen, 60-kDa 94.1 0.16 5.5E-06 54.9 9.9 46 128-173 367-418 (538)
40 3v4v_B Integrin beta-7; cell a 93.1 2 6.8E-05 45.4 15.8 283 128-472 131-427 (503)
41 3vi3_B Integrin beta-1; beta p 92.8 8.6 0.0003 40.1 19.9 202 128-376 121-334 (454)
42 3k6s_B Integrin beta-2; cell r 88.9 1.7 5.8E-05 48.1 10.7 209 128-382 103-324 (687)
43 2iue_A Pactolus I-domain; memb 87.0 6.4 0.00022 36.8 11.9 45 129-173 3-51 (212)
44 2nvo_A RO sixty-related protei 79.9 4.2 0.00014 43.7 8.4 47 128-174 361-415 (535)
45 2a20_A Regulating synaptic mem 78.0 0.46 1.6E-05 34.5 0.1 28 57-88 32-59 (62)
46 2j9u_B VPS36, vacuolar protein 77.7 0.53 1.8E-05 36.1 0.3 20 78-97 15-34 (76)
47 3rag_A Uncharacterized protein 74.7 10 0.00035 36.1 8.5 44 340-383 29-76 (242)
48 2gmg_A Hypothetical protein PF 74.0 0.96 3.3E-05 37.2 1.0 36 57-97 66-101 (105)
49 1gh9_A 8.3 kDa protein (gene M 72.0 1.7 5.8E-05 33.2 1.9 31 57-93 3-33 (71)
50 1vq8_Z 50S ribosomal protein L 69.0 3.1 0.00011 32.8 2.9 31 58-92 27-57 (83)
51 1pft_A TFIIB, PFTFIIBN; N-term 67.9 6.7 0.00023 27.4 4.2 30 58-90 5-34 (50)
52 4gat_A Nitrogen regulatory pro 60.9 2.9 0.0001 31.4 1.2 31 57-88 8-38 (66)
53 2vut_I AREA, nitrogen regulato 52.8 3.1 0.0001 28.4 0.1 30 58-88 1-30 (43)
54 2hgo_A CASSIICOLIN; toxin, dis 50.8 9.4 0.00032 22.2 1.9 26 60-86 2-27 (27)
55 1gnf_A Transcription factor GA 41.8 3.9 0.00013 28.3 -0.7 31 58-89 4-34 (46)
56 3j20_Y 30S ribosomal protein S 40.3 15 0.00051 25.8 2.1 26 58-89 19-46 (50)
57 3j21_g 50S ribosomal protein L 40.2 9.4 0.00032 27.0 1.0 29 57-93 13-41 (51)
58 1x0t_A Ribonuclease P protein 39.6 9.8 0.00034 32.1 1.3 35 59-93 66-107 (120)
59 2csz_A Synaptotagmin-like prot 38.0 10 0.00036 29.1 1.1 31 59-89 43-73 (76)
60 6rxn_A Rubredoxin; electron tr 37.7 7.2 0.00025 27.0 0.1 8 81-88 31-38 (46)
61 1s24_A Rubredoxin 2; electron 35.9 7.2 0.00024 30.9 -0.2 9 80-88 68-76 (87)
62 2avu_E Flagellar transcription 35.9 9.8 0.00033 34.8 0.7 28 57-87 133-161 (192)
63 1yuz_A Nigerythrin; rubrythrin 35.5 12 0.00042 34.5 1.4 25 58-89 171-195 (202)
64 2k3r_A Ribonuclease P protein 34.2 22 0.00075 30.1 2.6 35 59-93 61-102 (123)
65 4hc9_A Trans-acting T-cell-spe 34.0 8.1 0.00028 32.4 -0.2 30 58-88 5-34 (115)
66 2lk0_A RNA-binding protein 5; 32.7 13 0.00046 23.4 0.8 13 79-91 4-16 (32)
67 2zet_C Melanophilin; complex, 32.1 9.4 0.00032 33.7 -0.1 33 59-91 86-119 (153)
68 2kdx_A HYPA, hydrogenase/ureas 31.7 16 0.00056 30.5 1.4 28 58-91 73-101 (119)
69 2k0a_A PRE-mRNA-splicing facto 31.1 16 0.00054 29.7 1.1 40 59-98 30-75 (109)
70 1yk4_A Rubredoxin, RD; electro 30.8 11 0.00037 26.8 0.1 8 81-88 36-43 (52)
71 1zbd_B Rabphilin-3A; G protein 30.3 17 0.00058 31.3 1.3 33 59-91 73-109 (134)
72 1zso_A Hypothetical protein; s 29.2 17 0.00057 32.5 1.1 34 59-92 38-82 (164)
73 1e8j_A Rubredoxin; iron-sulfur 29.0 33 0.0011 24.2 2.4 11 80-90 3-13 (52)
74 2k1p_A Zinc finger RAN-binding 27.2 17 0.00057 23.1 0.5 13 80-92 6-18 (33)
75 2dj7_A Actin-binding LIM prote 26.8 63 0.0021 24.5 3.9 34 56-89 13-51 (80)
76 1twf_I B12.6, DNA-directed RNA 26.5 19 0.00065 30.4 0.9 36 58-93 4-39 (122)
77 1dl6_A Transcription factor II 25.6 37 0.0013 24.5 2.2 29 58-89 11-39 (58)
78 1w7p_D VPS36P, YLR417W; ESCRT- 25.1 15 0.00052 39.4 0.0 20 78-97 115-134 (566)
79 4rxn_A Rubredoxin; electron tr 24.9 16 0.00056 26.1 0.1 8 81-88 37-44 (54)
80 2v3b_B Rubredoxin 2, rubredoxi 24.8 14 0.00047 26.6 -0.3 10 80-89 3-12 (55)
81 3dfx_A Trans-acting T-cell-spe 24.8 7.5 0.00025 28.9 -1.7 31 58-89 7-37 (63)
82 1dx8_A Rubredoxin; electron tr 24.5 17 0.00058 27.5 0.2 9 80-88 40-48 (70)
83 1b3t_A Protein (nuclear protei 24.4 1.6E+02 0.0054 24.7 6.0 36 140-175 107-145 (147)
84 1wii_A Hypothetical UPF0222 pr 24.1 18 0.00061 28.5 0.2 15 79-93 22-36 (85)
85 2kn9_A Rubredoxin; metalloprot 23.8 14 0.00049 28.8 -0.4 8 81-88 61-68 (81)
86 1wg8_A Predicted S-adenosylmet 22.6 30 0.001 33.7 1.6 28 144-171 208-235 (285)
87 4gzn_C ZFP-57, zinc finger pro 22.4 19 0.00066 26.0 0.1 35 58-92 4-44 (60)
88 4ayb_P DNA-directed RNA polyme 22.1 22 0.00076 24.5 0.4 8 81-88 24-31 (48)
89 2l4z_A DNA endonuclease RBBP8, 21.9 83 0.0028 26.2 4.1 33 57-89 60-97 (123)
90 3tka_A Ribosomal RNA small sub 21.8 31 0.0011 34.6 1.5 28 144-171 249-276 (347)
91 2akl_A PHNA-like protein PA012 21.7 44 0.0015 28.3 2.2 29 57-90 26-54 (138)
92 2js4_A UPF0434 protein BB2007; 21.6 85 0.0029 23.6 3.6 32 57-92 7-38 (70)
93 1bbo_A Human enhancer-binding 21.4 21 0.00071 24.4 0.1 35 58-92 1-41 (57)
94 1vd4_A Transcription initiatio 21.3 28 0.00095 24.7 0.8 35 57-91 13-50 (62)
95 1nj3_A NPL4; NZF domain, rubre 21.3 31 0.0011 21.3 0.9 16 78-93 4-19 (31)
96 3gj5_B Nuclear pore complex pr 20.7 30 0.001 22.2 0.7 15 79-93 6-20 (34)
97 2apo_B Ribosome biogenesis pro 20.4 39 0.0013 24.7 1.4 26 57-92 5-30 (60)
98 2k4x_A 30S ribosomal protein S 20.1 58 0.002 23.2 2.3 28 58-89 18-45 (55)
99 2jny_A Uncharacterized BCR; st 20.1 94 0.0032 23.1 3.5 32 57-92 9-40 (67)
No 1
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=6.2e-110 Score=943.54 Aligned_cols=531 Identities=40% Similarity=0.708 Sum_probs=476.1
Q ss_pred CCcccccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCceEEEcCCc
Q 008566 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (561)
Q Consensus 2 ~~~~~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~~~RC~~--C~ayiNp~~~~~~~~~ 79 (561)
|||.++|+++|||+|||++|.+++++++++||||++|+||++. +++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 7888999999999999999999999999999999999999975 578999999999999 9999999999999999
Q ss_pred eeEeCCCCCCCCCCccCcCCCCCCCCcccCCCCcceEEeCCCCCCCCCCCcEEEEEEEcccchhhHHHHHHHHHHHhhcC
Q 008566 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (561)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEl~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l 159 (561)
+|+||||++.|++|++|..+...++|||| ++++|||+++++++ .||+|+||||+|.++++++.++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999866667889999 49999999997544 69999999999999999999999999999999
Q ss_pred CCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHh-ccCCCCCCCCCccccCc-----CCCC-CC-c
Q 008566 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-----RDGL-SS-D 231 (561)
Q Consensus 160 ~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-----~~~~-~~-~ 231 (561)
|++++|||||||+.||||+++ +.. +++++||+|+++++.+++++++ ++.+. .+|++ +|++ ++ +
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~~-~~~~~V~~g~k~~~~~q~~~~l~~l~~~-------~~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEMLTGQKPT-------GPGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SSS-SEEEEEEETTSCCCHHHHHHHHHSCCCC----------------------CCSS
T ss_pred CCCCEEEEEEECCEEEEEECC-CCC-CcceeeecCCccccHHHHHHHHhhcccc-------ccCCccccccccccccccC
Confidence 999999999999999999999 666 8999999999999999999998 76531 01222 2211 11 2
Q ss_pred cccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccC
Q 008566 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (561)
Q Consensus 232 ~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~ 311 (561)
+.++||+|++||++.|.++|++|++++|++++++++.||+|+||++|..+|+.+.++.||||++|++|+||.|||+|+.+
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence 36899999999999999999999998888888899999999999999999997777899999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccchHH
Q 008566 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKD 391 (561)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~ 391 (561)
+.++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|.+
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~ 382 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQ 382 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHH
T ss_pred ccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-ccccCcCceeeeEEEEEecCCceEEeEEcCccccCC-CCCCccCccccCCCCCceEEeCCCCCceEEEEEEE
Q 008566 392 SVRRVFH-SGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEI 469 (561)
Q Consensus 392 ~l~~~~~-~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~-~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~f~~ 469 (561)
+++++|+ +..+++++||+|+||||||+|++|++++||++..++ +++++||+++|.|+++.|++++++++++|+|+|++
T Consensus 383 ~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~ 462 (768)
T 1m2o_A 383 SYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEI 462 (768)
T ss_dssp HHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEe
Confidence 9999994 444456799999999999999999999999998776 78899999999999999999999999999999999
Q ss_pred ecCCCCcc-----ccc-CCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCC-HHHHHhccCHHHHHHHHHHHHHHH
Q 008566 470 VKKEIPDA-----TLQ-STNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGS-VQDLIAGFDQEAAAVVMARLVSFK 542 (561)
Q Consensus 470 ~~~~~~~~-----~l~-~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~-~~~~~~~~D~~a~~~llak~a~~~ 542 (561)
++...... +++ +....+|||+|++||+.+|+|||||||+++| +++ + +.++|+++|+||++++|||+|+.+
T Consensus 463 ~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~-~t~--~~~~~v~~~~Dqea~~~llar~av~~ 539 (768)
T 1m2o_A 463 ANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQ-LLP--FGTPAIAASFDQEAAAVLMARIAVHK 539 (768)
T ss_dssp CCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEE-EEC--TTCHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeeccc-ccC--ccHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 98721100 011 0346899999999999999999999999999 776 5 899999999999999999999999
Q ss_pred hhccCccceEE
Q 008566 543 MEIEVIFITLT 553 (561)
Q Consensus 543 ~~~~~~~d~~~ 553 (561)
+++++..|++|
T Consensus 540 ~~~~~~~d~r~ 550 (768)
T 1m2o_A 540 AETDDGADVIR 550 (768)
T ss_dssp TTSSCHHHHHH
T ss_pred HhcCCHHHHHH
Confidence 99998888775
No 2
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=5.3e-109 Score=935.04 Aligned_cols=529 Identities=45% Similarity=0.814 Sum_probs=472.2
Q ss_pred CCCcc----cccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCcccCC--CCceecCceEE
Q 008566 1 MTEFM----DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (561)
Q Consensus 1 ~~~~~----~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~~~RC~~--C~ayiNp~~~~ 74 (561)
||+|. .||+|+|||+|||++|.+++++++++||||++|+||++. +++|+++++|+||++ |+|||||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 67754 489999999999999999999999999999999999976 568999999999999 99999999999
Q ss_pred EcCCceeEeCCCCCCCCCCccCcCCCCCCCCcccCCCCcceEEeCCCCCCCCCCCcEEEEEEEcccchhhHHHHHHHHHH
Q 008566 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (561)
Q Consensus 75 ~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~pEl~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~~~~l~~~l~~ 154 (561)
+.+|++|+||||++.|++|++|..+...++||||.|++++|||.++++.+ .||+|+||||+|.++++++.++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999998666678899998789999999997654 599999999999999999999999999
Q ss_pred HhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccCc-----CCCCC
Q 008566 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGV-----RDGLS 229 (561)
Q Consensus 155 ~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 229 (561)
+|+.||++++|||||||+.||||+++ +.. +++.|||+|+++++.+++++|+++.+. ++++ +|+++
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~~-~~~~~vf~G~k~~~~~q~~~ml~v~d~--------~~~~~~~~~~~~f~ 227 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CEG-ISKSYVFRGTKDLSAKQLQEMLGLSKV--------PVTQATRGPQVQQP 227 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CCS-SCEEEEEETTSCCCSHHHHHHHC--------------------------
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CCC-CccceeecCCccccHHHHHHHhCCCCc--------ccccccccccccCC
Confidence 99999999999999999999999999 766 889999999999999999998876430 0121 33221
Q ss_pred CccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccc
Q 008566 230 SDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIV 309 (561)
Q Consensus 230 ~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~ 309 (561)
+ +.++||+|++|+++.|.++|++|+++.|++++.+++.||+|+||++|..+|+...++.||||++|++|+||.|||+|+
T Consensus 228 ~-p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~ 306 (769)
T 2nut_A 228 P-PSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVV 306 (769)
T ss_dssp --CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCS
T ss_pred C-cccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCc
Confidence 2 348999999999999999999999988888888999999999999999999977778999999999999999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccch
Q 008566 310 SKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVF 389 (561)
Q Consensus 310 ~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~ 389 (561)
.++.++++|+|+|+++|++++++++.+||++||++|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.+.|
T Consensus 307 ~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~ 386 (769)
T 2nut_A 307 GDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLF 386 (769)
T ss_dssp CSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHH
T ss_pred CcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-ccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCceEEEEEE
Q 008566 390 KDSVRRVFH-SGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFE 468 (561)
Q Consensus 390 ~~~l~~~~~-~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~f~ 468 (561)
.+++++.|. +..+++.+||+|+||||||+|++|++++||+++.+++++++||+++|.|+++.|++++++++++|+|+|+
T Consensus 387 ~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~ 466 (769)
T 2nut_A 387 KQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFE 466 (769)
T ss_dssp HHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEE
Confidence 999999994 4433457899999999999999999999999998888899999999999999999999999999999999
Q ss_pred EecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCH---HHHHhccCHHHHHHHHHHHHHHHhhc
Q 008566 469 IVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV---QDLIAGFDQEAAAVVMARLVSFKMEI 545 (561)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~---~~~~~~~D~~a~~~llak~a~~~~~~ 545 (561)
+++.... +++ ....+|||+|++||+.+|+|||||||+++| +++ ++ .++|+++|+||++++|||+|+.++++
T Consensus 467 ~~~~~~~--~l~-~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~-~t~--~~~~~~~v~~~~Dqea~~~llar~a~~~~~~ 540 (769)
T 2nut_A 467 VVNQHNA--PIP-QGGRGAIQFVTQYQHSSGQRRIRVTTIARN-WAD--AQTQIQNIAASFDQEAAAILMARLAIYRAET 540 (769)
T ss_dssp EC-------------CCEEEEEEEEEEETTSCEEEEEEEEEEC-BCC--GGGHHHHHHHTBCHHHHHHHHHHHHHHHHTT
T ss_pred ecCcccc--ccC-CCCeEEEEEEEEEECCCCCEEEEEEeeccc-ccC--CcccHHHHHHhcCHHHHHHHHHHHHHHHhcc
Confidence 9986321 132 346799999999999999999999999999 887 66 69999999999999999999999999
Q ss_pred cCccceEE
Q 008566 546 EVIFITLT 553 (561)
Q Consensus 546 ~~~~d~~~ 553 (561)
++..|++|
T Consensus 541 ~~~~d~~~ 548 (769)
T 2nut_A 541 EEGPDVLR 548 (769)
T ss_dssp C---CHHH
T ss_pred CCHHHHHH
Confidence 98888876
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=1.9e-98 Score=843.92 Aligned_cols=469 Identities=22% Similarity=0.376 Sum_probs=410.7
Q ss_pred cccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCC-CCcccCCCCceecCceEEEcCCceeEeC
Q 008566 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY-APLRCRTCRSILNPFSIVDFAAKIWICP 84 (561)
Q Consensus 6 ~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~-~~~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (561)
-|++|+|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||++|||||||||+|. ++++|+||
T Consensus 36 ~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~----~~~P~v~~~~p~RC~rCrayiNPf~~f~-~~~~w~Cn 110 (751)
T 3eh1_A 36 LNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDL----TQLPVITSNTIVRCRSCRTYINPFVSFI-DQRRWKCN 110 (751)
T ss_dssp HSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCC----SCCCEECCSCCCBCTTTCCBCCTTCEES-SSSEEECT
T ss_pred cCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcC----CCCCccCCCCCCcccCccCEeCCceEEe-cCCEEEcc
Confidence 499999999999999999999999999999999999987 56888776 5899999999999999994 56899999
Q ss_pred CCCCCCCCCccCcC--C----CCCCCCcccCCCCcceEEeCCCCCC-CCCCCcEEEEEEEcccchhhHH---HHHHHHHH
Q 008566 85 FCFQRNHFPPHYAS--I----TDDNLPAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALSQ 154 (561)
Q Consensus 85 ~C~~~N~~p~~y~~--~----~~~~~~pEl~~~~~tvey~~~~~~~-~~~~~p~~vFvID~s~~~~~~~---~l~~~l~~ 154 (561)
||+..|++|++|.. . .+.++||||. +++|||++|++.. .++.||+|+||||+|..+++.| .++++|++
T Consensus 111 ~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~--~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~ 188 (751)
T 3eh1_A 111 LCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQ--NSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLE 188 (751)
T ss_dssp TTCCEEECCGGGC---------CGGGSHHHH--CSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHH
T ss_pred cccCCCCCCHHHhcccccccccCcccCchhc--cceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHH
Confidence 99999999999952 1 1345789994 9999999984211 1125999999999999999854 56899999
Q ss_pred HhhcCCCCc--eEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccCcCCCCCCcc
Q 008566 155 AIDLLPDNS--LVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDT 232 (561)
Q Consensus 155 ~l~~l~~~~--~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (561)
+|+.||+++ +|||||||+.||||+++ ++...++ |++++|++|++ +|.
T Consensus 189 ~L~~lp~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q-----------------------------mlvv~dl~d~f-~P~ 237 (751)
T 3eh1_A 189 NLDKLPGDSRTRIGFMTFDSTIHFYNLQ-EGLSQPQ-----------------------------MLIVSDIDDVF-LPT 237 (751)
T ss_dssp HTTTSSCCTTCEEEEEEESSSEEEEECC-TTCSSCE-----------------------------EEEESCTTCTT-SCC
T ss_pred HHHhcCCCcCcEEEEEEeCCEEEEEECC-CCcccce-----------------------------eeccccccccC-CCC
Confidence 999999865 99999999999999998 5432233 33345555532 445
Q ss_pred ccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccCC
Q 008566 233 IARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKN 312 (561)
Q Consensus 233 ~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~~ 312 (561)
.++||+|++||++.|.++|++|+.. +++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.++
T Consensus 238 ~~~~lv~l~e~~~~i~~lL~~Lp~~---~~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l~~r~ 310 (751)
T 3eh1_A 238 PDSLLVNLYESKELIKDLLNALPNM---FTNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLLQSRE 310 (751)
T ss_dssp GGGTSEETTTTHHHHHHHHHHGGGT---STTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCCCCCC
T ss_pred hhhhcccHHHHHHHHHHHHHhhhHh---hcCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCcccccc
Confidence 5799999999999999999999774 67788899999999999999998 7999999999999999999999987
Q ss_pred CCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCcc-----
Q 008566 313 LSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA----- 387 (561)
Q Consensus 313 ~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~----- 387 (561)
.++ .|+|. +| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+
T Consensus 311 ~~~-~~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~ 385 (751)
T 3eh1_A 311 DPN-QRSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQ 385 (751)
T ss_dssp CSC-GGGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHH
T ss_pred ccc-cCCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhH
Confidence 544 45653 44 478999999999999999999999999999999999999999999999999999999964
Q ss_pred --chHHHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCceEEE
Q 008566 388 --VFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCL 465 (561)
Q Consensus 388 --~~~~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~ 465 (561)
.|.+++++.+.+ ++||+|+||||||+|++|++++||++. ++++.|+++++++|++|+|
T Consensus 386 ~~~f~~dl~r~l~~-----~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~d~s~~v 445 (751)
T 3eh1_A 386 AEKLQKDLKRYLTR-----KIGFEAVMRIRCTKGLSMHTFHGNFFV---------------RSTDLLSLANINPDAGFAV 445 (751)
T ss_dssp HHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSEE---------------CSSSEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHhh-----hhccceEEEEEecCCeEEEEeeCCeEe---------------CCCCceEeccCCCCCEEEE
Confidence 678888888864 479999999999999999999999985 3578899999999999999
Q ss_pred EEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhc
Q 008566 466 VFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEI 545 (561)
Q Consensus 466 ~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~~~~ 545 (561)
+|+++++ ++ ....+|||+|++||+.+|+|||||||+++| +++ ++.++|+++|+||++++|||+|+.++.+
T Consensus 446 ~~~~~~~------l~-~~~~~~~Q~allYT~~~G~RRiRV~T~~l~-vt~--~~~~v~~~~DqeA~~~llar~av~~~~~ 515 (751)
T 3eh1_A 446 QLSIEES------LT-DTSLVCFQTALLYTSSKGERRIRVHTLCLP-VVS--SLADVYAGVDVQAAICLLANMAVDRSVS 515 (751)
T ss_dssp EEEESSC------CC-SCSEEEEEEEEEEECTTSCEEEEEEEEEEE-EEC--SHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC------CC-CCCceEEEEEEeeecCCCCEEEEEEEeccc-ccC--CHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999987 53 346899999999999999999999999999 988 8999999999999999999999999999
Q ss_pred cCccceEEe
Q 008566 546 EVIFITLTL 554 (561)
Q Consensus 546 ~~~~d~~~~ 554 (561)
++..|++|.
T Consensus 516 ~~l~d~r~~ 524 (751)
T 3eh1_A 516 SSLSDARDA 524 (751)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 888887654
No 4
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=3.6e-97 Score=841.58 Aligned_cols=480 Identities=18% Similarity=0.271 Sum_probs=398.5
Q ss_pred cccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CcccCCCCceecCceEEEcCCceeEeC
Q 008566 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (561)
Q Consensus 6 ~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~-~~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (561)
-||+|+|||+|||+||.+++++++++||||++|+||++..++++++|+++.+ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 3899999999999999999999999999999999999887666789988775 999999999999999999999999999
Q ss_pred CCCCCCCCCccCcCCCCCCC------CcccCCCCcceEEeCCCCCC-CCCCCcEEEEEEEcccchhhHH---HHHHHHHH
Q 008566 85 FCFQRNHFPPHYASITDDNL------PAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALSQ 154 (561)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~~------~pEl~~~~~tvey~~~~~~~-~~~~~p~~vFvID~s~~~~~~~---~l~~~l~~ 154 (561)
||++.|++|++|. ....++ ||||. +++|||+++++.. .+..||+|+||||+|.++++.| .++++|++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~ 215 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 215 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHH
Confidence 9999999999998 333333 49995 8999999984321 1225999999999999998866 68999999
Q ss_pred HhhcCCC---CceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccCcCCCCCCc
Q 008566 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (561)
Q Consensus 155 ~l~~l~~---~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (561)
+|+.||+ +++|||||||+.||||+++ +.. .|++++ .+ +++|+++++++|+ ++|
T Consensus 216 ~L~~Lp~~~~~~~VGlITfd~~V~~~~l~-~~~--------~g~k~~-~~-------------q~~mlvv~dl~d~-f~P 271 (810)
T 1pcx_A 216 NLDSIPNHDERTRISILCVDNAIHYFKIP-LDS--------ENNEES-AD-------------QINMMDIADLEEP-FLP 271 (810)
T ss_dssp HTTTSCCTTSCCEEEEEEESSSEEEEECC-CGG--------GC---------------------CEEECCCCTTCC----
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-ccc--------cCcccc-cc-------------chhhccccccccc-cCC
Confidence 9999997 7999999999999999998 543 255553 12 2345556777664 344
Q ss_pred cccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccC
Q 008566 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (561)
Q Consensus 232 ~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~ 311 (561)
..++||+|++||++.|.++|++|++. ++.++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.+
T Consensus 272 ~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~pt~GpG~l~~r 344 (810)
T 1pcx_A 272 RPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQRR 344 (810)
T ss_dssp --TTTSEETTTTHHHHHHHHHHHHHH---TTTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCC-
T ss_pred CcccccccHHHHHHHHHHHHHhhhhh---ccCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCCCCCCCCccccc
Confidence 55899999999999999999999984 56778899999999999999998 789999999999999999999998
Q ss_pred CCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccch--
Q 008566 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVF-- 389 (561)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~-- 389 (561)
+.+ +|+++++|++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+++
T Consensus 345 ~~~----~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d 420 (810)
T 1pcx_A 345 NES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPND 420 (810)
T ss_dssp -----------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHH
T ss_pred ccc----cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHH
Confidence 765 57789999877999999999999999999999999999999999999999999999999999999998754
Q ss_pred ----HHHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCceEEE
Q 008566 390 ----KDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCL 465 (561)
Q Consensus 390 ----~~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~ 465 (561)
..++.+.+. +++||+|+||||||+|++|++++||++.. +++.|++++++++++|+|
T Consensus 421 ~~~f~~dl~~~l~-----~~~gf~a~mrVR~S~gl~v~~~~G~~~~~---------------~~~~~~l~~~~~d~s~~v 480 (810)
T 1pcx_A 421 IVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAFSTMPRDQSYLF 480 (810)
T ss_dssp HHHHHHHHHHHHH-----CCCCEEEEEEEEECTTEEEEEEESSSBCS---------------SSSEEEESSCCSSCCEEE
T ss_pred HHHHHHHHHHHhh-----hhcceeEEEEEEcCCCeEEEEeecCcccc---------------CcCceEeecCCCCCEEEE
Confidence 344445543 34899999999999999999999999962 246899999999999999
Q ss_pred EEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhc
Q 008566 466 VFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEI 545 (561)
Q Consensus 466 ~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~~~~ 545 (561)
+|+++++ ++ ...+|||+|++||+.+|+|||||||+++| +++ ++.++|+++|+||++++|||+|+.++++
T Consensus 481 ~f~~~~~------l~--~~~~~~Q~allYt~~~G~RRiRV~T~~~~-vt~--~~~~v~~~~Dqea~~~llar~av~~~~~ 549 (810)
T 1pcx_A 481 EVNVDES------IM--ADYCYVQVAVLLSLNNSQRRIRIITLAMP-TTE--SLAEVYASADQLAIASFYNSKAVEKALN 549 (810)
T ss_dssp EEEECSC------CC--SSEEEEEEEEEEECTTSCEEEEEEEEEEE-EES--CHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccC------CC--CCcEEEEEEEEEEcCCCCEEEEEEecCcc-ccC--CHHHHHHhcCHHHHHHHHHHHHHHHhhc
Confidence 9999987 53 46899999999999999999999999999 888 8999999999999999999999999999
Q ss_pred cCccceEEe
Q 008566 546 EVIFITLTL 554 (561)
Q Consensus 546 ~~~~d~~~~ 554 (561)
++..|++|.
T Consensus 550 ~~~~d~r~~ 558 (810)
T 1pcx_A 550 SSLDDARVL 558 (810)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 887777654
No 5
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=2.1e-97 Score=846.81 Aligned_cols=480 Identities=19% Similarity=0.274 Sum_probs=415.5
Q ss_pred cccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCCCC-CcccCCCCceecCceEEEcCCceeEeC
Q 008566 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (561)
Q Consensus 6 ~~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~~~-~~RC~~C~ayiNp~~~~~~~~~~w~C~ 84 (561)
-||+|+|||+|||+||.+++++++++||||++|+||++..++++++|+++.+ |+||++|+|||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 3899999999999999999999999999999999999887666789988775 999999999999999999999999999
Q ss_pred CCCCCCCCCccCcCCCCCCC------CcccCCCCcceEEeCCCCCC-CCCCCcEEEEEEEcccchhhHH---HHHHHHHH
Q 008566 85 FCFQRNHFPPHYASITDDNL------PAELFPQYTTIEYEPPGPGE-KSSVPPVFMFVVDTCIIEEEMS---FLKSALSQ 154 (561)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~~------~pEl~~~~~tvey~~~~~~~-~~~~~p~~vFvID~s~~~~~~~---~l~~~l~~ 154 (561)
||++.|++|++|. ....++ ||||. +++|||+++++.. .+..||+||||||+|.+++++| .++++|++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~ 331 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQ 331 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHH
Confidence 9999999999998 443333 48995 8999999984321 1225999999999999998755 68999999
Q ss_pred HhhcCCC---CceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccCcCCCCCCc
Q 008566 155 AIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSD 231 (561)
Q Consensus 155 ~l~~l~~---~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (561)
+|+.||+ +++|||||||+.||||+++ +.. .|+++ +.++ ++|+++++++|+ ++|
T Consensus 332 ~L~~LP~~~~~~~VGlITFds~Vh~y~l~-~~~--------~g~k~-~~~q-------------~qmlvvsdl~d~-f~P 387 (926)
T 1m2v_B 332 NLDSIPNHDERTRISILCVDNAIHYFKIP-LDS--------ENNEE-SADQ-------------INMMDIADLEEP-FLP 387 (926)
T ss_dssp TTTTSCCTTSCCEECEEEESSSEEEEECC-CC------------------C-------------CEEEEECCCSSC-CCS
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEecC-Ccc--------cCCcc-cccc-------------hhhccccccccc-cCC
Confidence 9999996 7999999999999999998 543 25554 3332 334556677664 345
Q ss_pred cccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCcccccC
Q 008566 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK 311 (561)
Q Consensus 232 ~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~ 311 (561)
..++||+|++||++.|.++|++|++. ++..+++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.+
T Consensus 388 ~~~~~Lv~l~e~~~~I~~lLe~L~~~---~~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~Pt~GpG~l~~r 460 (926)
T 1m2v_B 388 RPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGKLQRR 460 (926)
T ss_dssp CSSSSSEETTTTHHHHHHHHHHHHHH---TSSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTCCCCC
T ss_pred CcccccccHHHHHHHHHHHHHhhhhh---hcCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCCCCCCCccccc
Confidence 55899999999999999999999984 56778899999999999999998 789999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcCCCCccchH-
Q 008566 312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFK- 390 (561)
Q Consensus 312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~- 390 (561)
+.+ +|.++++|++++++++.+||++||.+|+++||+||||+++.+++|+++|+.|++.|||.+++|++|+.++++
T Consensus 461 e~~----~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d 536 (926)
T 1m2v_B 461 NES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPND 536 (926)
T ss_dssp CC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHH
T ss_pred ccc----cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhH
Confidence 765 577888888669999999999999999999999999999999999999999999999999999999987544
Q ss_pred -----HHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCceEEE
Q 008566 391 -----DSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCL 465 (561)
Q Consensus 391 -----~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~ 465 (561)
.++.+.+. +++||+|+||||||+||+|++++||++.. +++.|++++++++++|+|
T Consensus 537 ~~kf~~dl~~~Lt-----~~~gf~a~mrVR~S~glkv~~~~G~~~~~---------------~s~~~~l~~l~~d~s~av 596 (926)
T 1m2v_B 537 IVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAFSTMPRDQSYLF 596 (926)
T ss_dssp HHHHHHHHHHHHH-----SCCEEEEEEEEEECTTEEEEEEESSSBCS---------------STTEEEEEEECSSCCEEE
T ss_pred HHHHHHHHHHHhh-----hhhceeEEEEEEeCCCcEEEEeecCcccc---------------CcCceEeeccCCCCEEEE
Confidence 44444443 34899999999999999999999999952 246899999999999999
Q ss_pred EEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhc
Q 008566 466 VFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFKMEI 545 (561)
Q Consensus 466 ~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~~~~ 545 (561)
+|+++++ ++ ...+|||+|++||+.+|+|||||||+++| +++ ++.++|+++|+||++++|||+|+.++++
T Consensus 597 ~f~~~~~------l~--~~~~~~Q~allYT~~~G~RRiRV~T~~l~-vt~--~l~~v~~s~Dqea~~~llar~av~~~~~ 665 (926)
T 1m2v_B 597 EVNVDES------IM--ADYCYVQVAVLLSLNNSQRRIRIITLAMP-TTE--SLAEVYASADQLAIASFYNSKAVEKALN 665 (926)
T ss_dssp EEEECSB------CC--SSEEEEEEEEEEEETTTEEEEEEEEEEEE-EES--CHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccC------CC--CCcEEEEEEEEEEcCCCCEEEEEEeeccc-ccC--CHHHHHHhcCHHHHHHHHHHHHHHHhhc
Confidence 9999986 53 46899999999999999999999999999 888 8999999999999999999999999999
Q ss_pred cCccceEEe
Q 008566 546 EVIFITLTL 554 (561)
Q Consensus 546 ~~~~d~~~~ 554 (561)
++..|++|.
T Consensus 666 ~~~~d~r~~ 674 (926)
T 1m2v_B 666 SSLDDARVL 674 (926)
T ss_dssp SCSHHHHHH
T ss_pred CCHHHHHHH
Confidence 888887664
No 6
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2.9e-96 Score=829.10 Aligned_cols=481 Identities=19% Similarity=0.329 Sum_probs=411.9
Q ss_pred ccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCC---CCCcccCCCCceecCceEEEcCCceeEe
Q 008566 7 LEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWIC 83 (561)
Q Consensus 7 ~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~---~~~~RC~~C~ayiNp~~~~~~~~~~w~C 83 (561)
|++|+|||+|||++|.+++++++++||||++|+||++..++|.++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 44 n~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 123 (770)
T 3efo_B 44 NASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQC 123 (770)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEEC
T ss_pred CCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEe
Confidence 9999999999999999999999999999999999999877667788874 4799999999999999999999999999
Q ss_pred CCCCCCCCCCccCcCCC---C----CCCCcccCCCCcceEEeCCCCCC---CCCCCcEEEEEEEcccchhh---HHHHHH
Q 008566 84 PFCFQRNHFPPHYASIT---D----DNLPAELFPQYTTIEYEPPGPGE---KSSVPPVFMFVVDTCIIEEE---MSFLKS 150 (561)
Q Consensus 84 ~~C~~~N~~p~~y~~~~---~----~~~~pEl~~~~~tvey~~~~~~~---~~~~~p~~vFvID~s~~~~~---~~~l~~ 150 (561)
|||+..|++|++|.+.. + .++||||. .++|||.+|.... .++.||+|+||||+|..+++ ++.+++
T Consensus 124 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~ 201 (770)
T 3efo_B 124 GFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS--LGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICE 201 (770)
T ss_dssp TTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH--CSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHH
T ss_pred ccccccCCCchHhhccccccccccccccCcccc--cCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHH
Confidence 99999999999997532 1 24689996 7899999873211 12259999999999999875 456899
Q ss_pred HHHHHhhcCCCC-------ceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccC
Q 008566 151 ALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAG 223 (561)
Q Consensus 151 ~l~~~l~~l~~~-------~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 223 (561)
+|+++|+.||++ ++|||||||+.||||+++ +....+++.| ++|
T Consensus 202 sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~q~q~~v-----------------------------v~d 251 (770)
T 3efo_B 202 ELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK-SNLAQPQMMV-----------------------------VTD 251 (770)
T ss_dssp HHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC-TTCSSCEEEE-----------------------------ECC
T ss_pred HHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC-CcccCceEEE-----------------------------ecc
Confidence 999999999974 899999999999999998 5432344443 344
Q ss_pred cCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCC-
Q 008566 224 VRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST- 302 (561)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt- 302 (561)
++| .++|..++||+|++||++.|.++|++|+++ ++......+|+|+|+++|..+++. .+.||||++|++|+|+
T Consensus 252 ~~d-~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~lP~t 325 (770)
T 3efo_B 252 VGE-VFVPLLDGFLVNYQESQSVIHNLLDQIPDM---FADSNENETVFAPVIQAGMEALKA--ADCPGKLFIFHSSLPTA 325 (770)
T ss_dssp TTS-CCCCCSSSSSBCTTTTHHHHHHHHHHHHHH---HHTCCCCCCCCHHHHHHHHHHHHH--HTCCEEEEEEECSCCCS
T ss_pred ccc-ccCCCccceeeeHHHHHHHHHHHHHhhHhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecCCCCc
Confidence 444 234456799999999999999999999875 233334567899999999999872 2579999999999666
Q ss_pred CCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcC
Q 008566 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSD 382 (561)
Q Consensus 303 ~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~ 382 (561)
.|||+|+.++.++.+|+ ++|+ ++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|+
T Consensus 326 ~GpG~l~~r~~~~~~~t----~ke~-~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~ 400 (770)
T 3efo_B 326 EAPGKLKNRDDKKLVNT----DKEK-ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYN 400 (770)
T ss_dssp SSTTCCCCCCCCCCSSC----SCGG-GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECT
T ss_pred CCCccccccccccccCC----cchh-hhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEec
Confidence 89999999998888776 3554 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCce
Q 008566 383 SFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATS 462 (561)
Q Consensus 383 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s 462 (561)
+|+.+.+.+.|.+.|.+.. .+++||+|+||||||+|++|+++|||++. ++++.|+++++++|++
T Consensus 401 ~F~~~~~~~~f~~dl~~~l-~~~~gf~a~mrVR~S~gl~v~~~~G~~~~---------------~~t~~~~l~~~~~d~s 464 (770)
T 3efo_B 401 NFQMHLDRQQFLNDLRNDI-EKKIGFDAIMRVRTSTGFRATDFFGGILM---------------NNTTDVEMAAIDCDKA 464 (770)
T ss_dssp TCCHHHHHHHHHHHHHHHH-HSCEEEEEEEEEEECTTEEEEEEESSCBC---------------SSSSCEEEEEEESSCC
T ss_pred CCcchhHHHHHHHHHHHhh-hhceeeeEEEEEEecCCeEEEEeECCeeC---------------CCCCceEecccCcCce
Confidence 9998766666655552211 24689999999999999999999999884 3578899999999999
Q ss_pred EEEEEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHH
Q 008566 463 LCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFK 542 (561)
Q Consensus 463 ~~~~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~ 542 (561)
|+|+|+++++ +. ....+|||+|++||+.+|+|||||||+++| +++ ++.++|+++|+||++++|||+|+.+
T Consensus 465 ~~v~f~~~~~------l~-~~~~~~~Q~allYt~~~G~RRiRV~T~~l~-vt~--~~~~v~~~~Dqea~~~llar~av~~ 534 (770)
T 3efo_B 465 VTVEFKHDDK------LS-EDSGALIQCAVLYTTISGQRRLRIHNLGLN-CSS--QLADLYKSCETDALINFFAKSAFKA 534 (770)
T ss_dssp EEEEEEESSC------CB-TTTBEEEEEEEEEECTTCCEEEEEEEEEEE-EES--CHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCC------CC-CCCcEEEEEEEEEEcCCCCEEEEEEEechh-hcc--cHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999987 64 345799999999999999999999999999 888 9999999999999999999999999
Q ss_pred hhccCccceEEeee
Q 008566 543 MEIEVIFITLTLNI 556 (561)
Q Consensus 543 ~~~~~~~d~~~~~~ 556 (561)
+++++..++.+..|
T Consensus 535 ~~~~~l~~~r~~L~ 548 (770)
T 3efo_B 535 VLHQPLKVIREILV 548 (770)
T ss_dssp TTTSCHHHHHHHHH
T ss_pred hccCCHHHHHHHHH
Confidence 99987666555443
No 7
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-96 Score=827.73 Aligned_cols=476 Identities=22% Similarity=0.330 Sum_probs=408.2
Q ss_pred ccCCCeeeeeccCCCCCHHHhhhCCCCeEEEEccCCCCCCCCCCCCCCC---CCCcccCCCCceecCceEEEcCCceeEe
Q 008566 7 LEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWIC 83 (561)
Q Consensus 7 ~~~~~~iR~T~~~~P~~~~~~~~~~lPlg~iv~P~~~~~~~~~~~p~~~---~~~~RC~~C~ayiNp~~~~~~~~~~w~C 83 (561)
|++|+|||+|||+||.+++++++++||||++|+||++..+++.++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 40 n~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 119 (766)
T 3eh2_A 40 NASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQC 119 (766)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEEC
T ss_pred CCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEe
Confidence 9999999999999999999999999999999999999877667788875 4799999999999999999999999999
Q ss_pred CCCCCCCCCCccCcCC---C----CCCCCcccCCCCcceEEeCCCCCC---CCCCCcEEEEEEEcccchhh---HHHHHH
Q 008566 84 PFCFQRNHFPPHYASI---T----DDNLPAELFPQYTTIEYEPPGPGE---KSSVPPVFMFVVDTCIIEEE---MSFLKS 150 (561)
Q Consensus 84 ~~C~~~N~~p~~y~~~---~----~~~~~pEl~~~~~tvey~~~~~~~---~~~~~p~~vFvID~s~~~~~---~~~l~~ 150 (561)
|||+..|++|++|++. . +.++||||. .++|||.++.... .++.||+|+||||+|..+++ ++.+++
T Consensus 120 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~ 197 (766)
T 3eh2_A 120 CFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--LGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCE 197 (766)
T ss_dssp TTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--CSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHH
T ss_pred ccccccCCCCHHHhccccccccccccccCcccc--cCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHH
Confidence 9999999999999753 1 246789996 6788887763211 12259999999999999875 456899
Q ss_pred HHHHHhhcCCCC-------ceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHHhccCCCCCCCCCccccC
Q 008566 151 ALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAG 223 (561)
Q Consensus 151 ~l~~~l~~l~~~-------~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 223 (561)
+|+++|+.||++ ++|||||||+.||||+++ ++...++++|++ +
T Consensus 198 si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q~~vv~-----------------------------d 247 (766)
T 3eh2_A 198 ELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVK-SSLAQPQMMVVS-----------------------------D 247 (766)
T ss_dssp HHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECC-TTCSSCEEEEEC-----------------------------C
T ss_pred HHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECC-CCCCCceEEEec-----------------------------C
Confidence 999999999964 899999999999999998 554356666652 3
Q ss_pred cCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCcEEEEEecCCCC-
Q 008566 224 VRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST- 302 (561)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~~~ggkIi~F~~g~pt- 302 (561)
++| .++|..++||+|++||++.|.++|++|+++ +++.....+|+|+|+++|..+++. .+.||||++|++|+|+
T Consensus 248 l~d-~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~lP~t 321 (766)
T 3eh2_A 248 VAD-MFVPLLDGFLVNVNESRAVITSLLDQIPEM---FADTRETETVFVPVIQAGMEALKA--AECAGKLFLFHTSLPIA 321 (766)
T ss_dssp TTT-CCCCCCTTSSBCTTTTHHHHHHHHHHHHHH---HTTCCCCCCCSHHHHHHHHHHHHH--TTCCEEEEEEECSCCCS
T ss_pred hhh-hccccccceeEeHHHHHHHHHHHHHhhhhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecCCCCc
Confidence 333 233456799999999999999999999985 233444567899999999999873 2579999999999666
Q ss_pred CCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccChhcchhhhhccCcEEEEcC
Q 008566 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSD 382 (561)
Q Consensus 303 ~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~ 382 (561)
.|||+|+.++.++.+|+ ++|+ ++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|+
T Consensus 322 ~GpG~l~~r~~~~~~~s----dke~-~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~ 396 (766)
T 3eh2_A 322 EAPGKLKNRDDRKLINT----DKEK-TLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYA 396 (766)
T ss_dssp SSTTCCCCCCCGGGTTS----TTGG-GGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECT
T ss_pred CCCcccccccccccCCC----cchh-hhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeC
Confidence 89999999998887765 4555 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEcCccccCCCCCCccCccccCCCCCceEEeCCCCCce
Q 008566 383 SFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATS 462 (561)
Q Consensus 383 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G~~~~~~~~~~~~sd~~~g~~~~~~~~~~~~~~~~s 462 (561)
+|+.+.+.+.|.+.|++.- .+++||+|+||||||+|++|+++|||++. ++++.|+++++++|++
T Consensus 397 ~F~~~~d~~~f~~dl~~~l-~~~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~d~s 460 (766)
T 3eh2_A 397 SFQVENDQERFLSDLRRDV-QKVVGFDAVMRVRTSTGIRAVDFFGAFYM---------------SNTTDVELAGLDGDKT 460 (766)
T ss_dssp TCCHHHHHHHHHHHHHHHH-HSCEEEEEEEEEEECTTEEEEEEEESCBC---------------SSSSCEEEEEEETTCC
T ss_pred CCcchhHHHHHHHHHHHHh-hhcceeeEEEEEEecCCeEEEEeECCeec---------------CCCCceeeccCCCCce
Confidence 9998775444444332110 14689999999999999999999999884 3578999999999999
Q ss_pred EEEEEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCcEEEEEEcCCcccccCCCCHHHHHhccCHHHHHHHHHHHHHHH
Q 008566 463 LCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSFK 542 (561)
Q Consensus 463 ~~~~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~r~iRV~T~~~~~vs~~~~~~~~~~~~D~~a~~~llak~a~~~ 542 (561)
|+|+|+++++ ++ ....+|||+|++||+.+|+|||||||+++| +++ ++.++|+++|+||++++|||+|+.+
T Consensus 461 ~~v~f~~~~~------l~-~~~~~~~Q~allYt~~~G~RRiRV~T~~l~-vt~--~~~~v~~~~Dqea~~~llar~av~~ 530 (766)
T 3eh2_A 461 VTVEFKHDDR------LN-EESGALLQCALLYTSCAGQRRLRIHNLALN-CCT--QLADLYRNCETDTLINYMAKFAYRG 530 (766)
T ss_dssp EEEEEEESSC------CC-TTTCEEEEEEEEEECTTSCEEEEEEEEEEE-EES--SHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCC------CC-CCCcEEEEEEEEeEcCCCCEEEEEEEEeeE-ecC--CHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999987 54 346899999999999999999999999999 888 8999999999999999999999999
Q ss_pred hhccCccce
Q 008566 543 MEIEVIFIT 551 (561)
Q Consensus 543 ~~~~~~~d~ 551 (561)
+++++.-|+
T Consensus 531 ~~~~~~~~~ 539 (766)
T 3eh2_A 531 VLNSPVKAV 539 (766)
T ss_dssp TTTSCHHHH
T ss_pred hhhCCHHHH
Confidence 998764333
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.63 E-value=4.3e-17 Score=121.89 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=46.0
Q ss_pred CCCCCcccCC--CCceecCceEEEcCCceeEeCCCCCCCCCCccCcCCCCCCCC
Q 008566 54 LPYAPLRCRT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLP 105 (561)
Q Consensus 54 ~~~~~~RC~~--C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~ 105 (561)
.+++|+||++ |+||||||++|++++++|+|+||+..|++|++|..++++|+|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 3568999999 999999999999999999999999999999999876555543
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.10 E-value=1.5e-07 Score=100.86 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=172.7
Q ss_pred CCcEEEEEEEcccchh----hHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEE----EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~----~~~~l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.+..++||||+|.++. .++.+++++...++.|+++.+||||+|++....+--. ..
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~-------------------- 134 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GG-------------------- 134 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SS--------------------
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-Cc--------------------
Confidence 3566999999999986 3567899999999999999999999999877654211 00
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeec-hhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHH
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA-FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll 282 (561)
.+.+. ...++.+...|+.|... ..+.++.||..|..++
T Consensus 135 --------------------------------~l~~~~~~~~~~l~~~I~~L~~~---------GgT~l~~aL~~A~~~l 173 (464)
T 4fx5_A 135 --------------------------------QLLRADYQSRAAAKEAVGRLHAN---------GGTAMGRWLAQAGRIF 173 (464)
T ss_dssp --------------------------------SCEECSHHHHHHHHHHHHTCCCC---------SCCCHHHHHHHHHHHH
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHcCCCC---------CCCcHHHHHHHHHHHH
Confidence 00001 23344666777766532 3467999999999998
Q ss_pred hccCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCcc
Q 008566 283 GACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362 (561)
Q Consensus 283 ~~~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~ 362 (561)
.. .+.....|+++++|.++.+. + ..... +.+....++.|..|.++. ..
T Consensus 174 ~~-~~~~~~~IILLTDG~~~~~~---------------------------~-~~l~~--~~~a~~~~i~i~tiGiG~-~~ 221 (464)
T 4fx5_A 174 DT-APSAIKHAILLTDGKDESET---------------------------P-ADLAR--AIQSSIGNFTADCRGIGE-DW 221 (464)
T ss_dssp TT-CTTSEEEEEEEESSCCTTSC---------------------------H-HHHHH--HHHHHTTTCEEEEEEESS-SS
T ss_pred hc-CCCCCCEEEEEcCCCCCCCC---------------------------h-HHHHH--HHHHhcCCCeEEEEEeCC-cc
Confidence 74 22334679999999765421 0 01111 122345788888887754 56
Q ss_pred ChhcchhhhhccCcEEEEcCCCCccchHHHHHHHHhccccCcCceeeeEEEEEecCCceEEeEEc--Cccc-cCCCCCCc
Q 008566 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIG--PCAS-LEKKGPLC 439 (561)
Q Consensus 363 ~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vr~S~gl~i~~~~G--~~~~-~~~~~~~~ 439 (561)
|-..|..|+..|||..++.++... +.+.+.+++.... ....-++.++++...|..+..+.. |... ...+
T Consensus 222 d~~~L~~IA~~tgG~~~~v~d~~~--L~~~f~~i~~~~~--s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~---- 293 (464)
T 4fx5_A 222 EPKELRKIADALLGTVGIIRDPAT--LAEDFREMTAKSM--GKEVADVALRLWAPKGATIRYVKQVSPNLADLSGM---- 293 (464)
T ss_dssp CHHHHHHHHHHTTCCEEEESSGGG--HHHHHHHHHHHHH--TCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGG----
T ss_pred CHHHHHHHHHhCCCEEEEcCCHHH--HHHHHHHHHHHhh--chheeeeEEEEEeCCCcEEEEEEeecccccccCcc----
Confidence 888999999999999988876553 4455555553321 246789999999999998876632 1111 0000
Q ss_pred cCccc-cCCCCCceEEeCCCCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEEEeCCCc
Q 008566 440 SDAVV-GQGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQ 500 (561)
Q Consensus 440 sd~~~-g~~~~~~~~~~~~~~~~s~~~~f~~~~~~~~~~~l~~~~~~~~iQ~a~~Yt~~~G~ 500 (561)
... ..+....+.++.+ .+.+=.|.+++.-.. .+.+......|+.+.|.+..|+
T Consensus 294 --~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~-----~~~g~~~~~~~v~~~y~~~~~~ 347 (464)
T 4fx5_A 294 --RVPGDNPLTGDYPTGAW-GAESREYHICVEVEP-----GNIGQEKLAGRVQLVAKDAGGA 347 (464)
T ss_dssp --CEECSSTTEEEEEEEEE-SSEEEEEEEEEECCC-----CCTTCEEEEEEEEEEEEETTEE
T ss_pred --cccCCCCcEEEEECCcC-CCCeEEEEEEEEcCC-----CCCCceeEEEEEEEEEcCCCcc
Confidence 000 0122456788888 777777777777431 1122233347999999998887
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=3.1e-07 Score=87.68 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCcEEEEEEEcccchh-------hHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCH
Q 008566 128 VPPVFMFVVDTCIIEE-------EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSK 200 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~-------~~~~l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~ 200 (561)
.+..++||||+|.++. .++.+++++...++.++ +.+||||+|++..+..--
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~--------------------- 67 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLP--------------------- 67 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEE---------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCC---------------------
Confidence 4778999999999975 46788999999999987 789999999976543210
Q ss_pred HHHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHH
Q 008566 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (561)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ 280 (561)
+....+.+..+|+.|.... .....+.++.||..|..
T Consensus 68 ---------------------------------------~~~~~~~~~~~l~~l~~~~-----~~~g~T~l~~al~~a~~ 103 (218)
T 3ibs_A 68 ---------------------------------------ITSDYISAKMFLESISPSL-----ISKQGTAIGEAINLATR 103 (218)
T ss_dssp ---------------------------------------EESCHHHHHHHHHTCCGGG-----CCSCSCCHHHHHHHHHT
T ss_pred ---------------------------------------CCCCHHHHHHHHHhcCccc-----CCCCCCcHHHHHHHHHH
Confidence 0111234566667665421 11234679999999998
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCC
Q 008566 281 LLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (561)
Q Consensus 281 ll~~~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~ 360 (561)
++... +.....|+++++|.++.| + ..+.+..+.+.||.|..+.++.+
T Consensus 104 ~l~~~-~~~~~~ivllTDG~~~~~-------~-------------------------~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 104 SFTPQ-EGVGRAIIVITDGENHEG-------G-------------------------AVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp TSCSC-SSCCEEEEEEECCTTCCS-------C-------------------------HHHHHHHHHTTTEEEEEEEESCT
T ss_pred HHhhC-CCCCcEEEEEcCCCCCCC-------c-------------------------HHHHHHHHHhcCCEEEEEEecCC
Confidence 87631 234568888999876554 0 12456677888999998888763
Q ss_pred ------------------------ccChhcchhhhhccCcEEEEcCCC
Q 008566 361 ------------------------QVGVAELKVAVEKTGGLVVLSDSF 384 (561)
Q Consensus 361 ------------------------~~~l~~l~~l~~~TGG~v~~y~~f 384 (561)
..+...|..+|..|||..++..+-
T Consensus 151 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~ 198 (218)
T 3ibs_A 151 EGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNS 198 (218)
T ss_dssp TCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSS
T ss_pred CCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCC
Confidence 567788999999999998888663
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.5e-06 Score=84.03 Aligned_cols=147 Identities=18% Similarity=0.100 Sum_probs=102.4
Q ss_pred EEEEEEEcccchh-------hHHHHHHHHHHHhh---cCCCCceEEEEEECC-eEEEEEcCCCCCCCCeeEeecCCccCC
Q 008566 131 VFMFVVDTCIIEE-------EMSFLKSALSQAID---LLPDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVS 199 (561)
Q Consensus 131 ~~vFvID~s~~~~-------~~~~l~~~l~~~l~---~l~~~~~VglItf~~-~V~~y~l~~~~~~~~~~~v~~g~~~~~ 199 (561)
+.|||||+|.++. ++...++++...++ .+++..+||||+|.. ...++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5799999999974 35667777766665 456778999999963 11111
Q ss_pred HHHHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH
Q 008566 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (561)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~ 279 (561)
.|+......|...|+.|+.. ....++.||+.|.
T Consensus 63 --------------------------------------~plT~D~~~il~aL~~l~~~---------G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 63 --------------------------------------STFTAEFGKILAGLHDTQIE---------GKLHMATALQIAQ 95 (268)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHHH
T ss_pred --------------------------------------cCCcchHHHHHHHhhhcCcC---------CCCChHHHHHHHH
Confidence 11122234677777777542 3457999999999
Q ss_pred HHHhccCC-CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008566 280 SLLGACVP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (561)
Q Consensus 280 ~ll~~~~~-~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s 358 (561)
.+|+.... ..--|||+|++|+-+. ..+-..++++++.++||.||++.++
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 99974222 2335799999986321 0133568999999999999999999
Q ss_pred CCccChhcchhhhhccCc
Q 008566 359 LDQVGVAELKVAVEKTGG 376 (561)
Q Consensus 359 ~~~~~l~~l~~l~~~TGG 376 (561)
.+..+-..|..+++..+|
T Consensus 146 ~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCCHHHHHHHHHCS
T ss_pred CCccchHHHHHHHHHhcC
Confidence 766677778888776655
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.35 E-value=1.2e-05 Score=77.05 Aligned_cols=161 Identities=11% Similarity=0.057 Sum_probs=106.9
Q ss_pred CCcEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.+.-++||||.|.+....+.+++.+...++.|. ++.+||+|+|++..+.. .+. .
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~-~--------------------- 78 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 78 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-C---------------------
Confidence 367799999999998878888999999998874 68999999999876542 111 0
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH-H
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l-l 282 (561)
+ .....+.+.|+.|... ....+.+|.||..|... +
T Consensus 79 --------------------------------~-----~~~~~~~~~i~~l~~~-------gG~~T~~~~aL~~a~~~l~ 114 (223)
T 2b2x_A 79 --------------------------------Y-----SSTEEVLVAANKIVQR-------GGRQTMTALGIDTARKEAF 114 (223)
T ss_dssp --------------------------------C-----CSHHHHHHHHTTCCCC-------CCSSCCHHHHHHHHHHTTS
T ss_pred --------------------------------C-----CCHHHHHHHHHhhhcc-------CCCCccHHHHHHHHHHHhc
Confidence 0 0112334444444321 11136799999999876 3
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC
Q 008566 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (561)
Q Consensus 283 ~~---~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~ 359 (561)
.. ..+.....|+++++|.++.|. -..+.+..+.+.||.|..+.++.
T Consensus 115 ~~~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 115 TEARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecC
Confidence 31 112233458888998765431 02345667778898777776654
Q ss_pred CccC---------hhcchhhhhc-cCcEEEEcCCCCc
Q 008566 360 DQVG---------VAELKVAVEK-TGGLVVLSDSFGH 386 (561)
Q Consensus 360 ~~~~---------l~~l~~l~~~-TGG~v~~y~~f~~ 386 (561)
+ .+ ...|..++.. |||+++..+++..
T Consensus 164 ~-~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 164 H-YNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp G-GC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred c-cccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 2 22 4788999998 9999999887764
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.32 E-value=1.8e-05 Score=74.48 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=107.1
Q ss_pred CcEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHHHHH
Q 008566 129 PPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (561)
+.-++||||.|.+...++.+++.++..++.+. ++.+||+|+|++..+.. .+. .
T Consensus 6 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~-~---------------------- 62 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN-T---------------------- 62 (200)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-T----------------------
T ss_pred cccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-C----------------------
Confidence 66799999999998777888999999998885 68999999999876542 111 0
Q ss_pred HHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH-Hh
Q 008566 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-LG 283 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l-l~ 283 (561)
...++.+.+.|+.|+... ...+.+|.||..|... +.
T Consensus 63 ------------------------------------~~~~~~~~~~i~~l~~~~-------G~~T~~~~al~~a~~~~~~ 99 (200)
T 1v7p_C 63 ------------------------------------YKTKEEMIVATSQTSQYG-------GDLTNTFGAIQYARKYAYS 99 (200)
T ss_dssp ------------------------------------CSSHHHHHHHHHHCCCCC-------CSCCCHHHHHHHHHHHTTS
T ss_pred ------------------------------------cCCHHHHHHHHHhhhccC-------CCCCcHHHHHHHHHHhhcc
Confidence 001224555666664321 1236799999999885 43
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC-
Q 008566 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL- 359 (561)
Q Consensus 284 ~~---~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~- 359 (561)
.. .+.....|+++++|.++.+. -..+.+.++.+.||.|..+.++.
T Consensus 100 ~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~~ 148 (200)
T 1v7p_C 100 AASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLGY 148 (200)
T ss_dssp GGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECHH
T ss_pred cccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEeccc
Confidence 21 11233458888998765221 01345667778898777776631
Q ss_pred ---CccC----hhcchhhhhccCcE-EEEcCCCCc
Q 008566 360 ---DQVG----VAELKVAVEKTGGL-VVLSDSFGH 386 (561)
Q Consensus 360 ---~~~~----l~~l~~l~~~TGG~-v~~y~~f~~ 386 (561)
..++ ..+|..++..|||. ++..+++..
T Consensus 149 ~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 149 LNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred ccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 2344 56799999999886 566666654
No 14
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.28 E-value=4.9e-05 Score=71.68 Aligned_cols=163 Identities=10% Similarity=0.096 Sum_probs=106.3
Q ss_pred CCcEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHH
Q 008566 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
.+.-++||||.|.+.. .++.+++.++..++.|+ ++.|||+|+|++..+.. .+. .
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~-~------------------- 71 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK-D------------------- 71 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC-C-------------------
Confidence 3677999999999864 45678999999999886 57899999999876542 111 0
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH-H
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-S 280 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~-~ 280 (561)
+ ..++.+.+.|+.|+.. ....+.+|.||..|. .
T Consensus 72 ----------------------------------~-----~~~~~~~~~i~~l~~~-------gg~~T~~~~aL~~a~~~ 105 (202)
T 1ijb_A 72 ----------------------------------R-----KRPSELRRIASQVKYA-------GSQVASTSEVLKYTLFQ 105 (202)
T ss_dssp ----------------------------------C-----CCHHHHHHHHHTCCCC-------CBSCCCHHHHHHHHHHH
T ss_pred ----------------------------------C-----CCHHHHHHHHHhCcCC-------CCCcCcHHHHHHHHHHH
Confidence 0 0123456667766432 112367999999987 4
Q ss_pred HHhcc-CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC
Q 008566 281 LLGAC-VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (561)
Q Consensus 281 ll~~~-~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~ 359 (561)
++... .+...-.|+++++|.++.|. . . -..+.+..+.+.||.|-.+.++
T Consensus 106 ~~~~~~r~~~~~~iillTDG~~~~~~----~------------------~-------~~~~~a~~l~~~gi~i~~igvG- 155 (202)
T 1ijb_A 106 IFSKIDRPEASRIALLLMASQEPQRM----S------------------R-------NFVRYVQGLKKKKVIVIPVGIG- 155 (202)
T ss_dssp TSSSCSCTTSEEEEEEEECCCCCGGG----C------------------T-------THHHHHHHHHHTTEEEEEEEES-
T ss_pred HhccCCCCCCCeEEEEEccCCCCccc----h------------------H-------HHHHHHHHHHHCCCEEEEEecC-
Confidence 44421 11233458888888764321 0 0 0123456667788866655554
Q ss_pred CccChhcchhhhhc-cCcEEEEcCCCCc
Q 008566 360 DQVGVAELKVAVEK-TGGLVVLSDSFGH 386 (561)
Q Consensus 360 ~~~~l~~l~~l~~~-TGG~v~~y~~f~~ 386 (561)
+..+..+|..++.. +||++++.++|+.
T Consensus 156 ~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 156 PHANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp TTSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred CcCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 34788899999985 6889998887764
No 15
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.28 E-value=7.3e-05 Score=68.79 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=100.6
Q ss_pred CCcEEEEEEEcccchhhHH-HHHHHHHHHhhc-CCCCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHHHHH
Q 008566 128 VPPVFMFVVDTCIIEEEMS-FLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLL 204 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~~~-~l~~~l~~~l~~-l~~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (561)
.+.-++|+||.|.+..... ..++.+++.+.. +.++.+||+|+|++..+..- +.
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~------------------------ 60 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT------------------------ 60 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE------------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC------------------------
Confidence 4678999999999875432 123344444433 34689999999998654321 11
Q ss_pred HHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhc
Q 008566 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~ 284 (561)
..++.+...++.|.... + ...+.++.||..|..++..
T Consensus 61 -------------------------------------~~~~~~~~~l~~l~~~~---~---~g~T~~~~al~~a~~~l~~ 97 (182)
T 1shu_X 61 -------------------------------------GDRGKISKGLEDLKRVS---P---VGETYIHEGLKLANEQIQK 97 (182)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHTCC---C---CSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHhcccCC---C---CCCchHHHHHHHHHHHHHh
Confidence 11224556666665321 1 1346799999999999863
Q ss_pred cC-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccC
Q 008566 285 CV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (561)
Q Consensus 285 ~~-~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~ 363 (561)
.. ......|+++++|.++.+. .......+..+.+.|+.|..+.++ ..+
T Consensus 98 ~~~~~~~~~iiliTDG~~~~~~-----------------------------~~~~~~~~~~~~~~~i~i~~igvg--~~~ 146 (182)
T 1shu_X 98 AGGLKTSSIIIALTDGKLDGLV-----------------------------PSYAEKEAKISRSLGASVYCVGVL--DFE 146 (182)
T ss_dssp HTGGGSCEEEEEEECCCCCTTH-----------------------------HHHHHHHHHHHHHTTCEEEEEECS--SCC
T ss_pred ccCCCCCeEEEEECCCCcCCCC-----------------------------chhHHHHHHHHHhCCCEEEEEeCC--cCC
Confidence 21 1345678888888754210 122345677778889877777665 567
Q ss_pred hhcchhhhhccCcEEEEcCCCC
Q 008566 364 VAELKVAVEKTGGLVVLSDSFG 385 (561)
Q Consensus 364 l~~l~~l~~~TGG~v~~y~~f~ 385 (561)
-..|..++..+||..+.-+++.
T Consensus 147 ~~~L~~ia~~~~~~~~~~~~~~ 168 (182)
T 1shu_X 147 QAQLERIADSKEQVFPVKGGFQ 168 (182)
T ss_dssp HHHHHHHSSSGGGEEESSSTTH
T ss_pred HHHHHHHhCCCCceEEccCCHH
Confidence 8889999999977533332444
No 16
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.28 E-value=2.6e-05 Score=74.27 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=105.2
Q ss_pred CCcEEEEEEEcccchhh--HHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHH
Q 008566 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l---~~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
.+.-++||||.|.+... ++.+++++...++.| +++.+||||+|++..+..- +. .
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~-~------------------- 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E------------------- 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc-c-------------------
Confidence 37789999999998754 566777777776554 5578999999998765431 11 0
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l 281 (561)
+....++.+...|+.|.... ......+.++.||..|...
T Consensus 74 -------------------------------------~~~~~~~~~~~~i~~l~~~~----~~~~g~T~~~~aL~~a~~~ 112 (223)
T 1q0p_A 74 -------------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSM 112 (223)
T ss_dssp -------------------------------------GGGGCHHHHHHHHHTCCTTS----CSCTTCCCHHHHHHHHHHH
T ss_pred -------------------------------------CCCCCHHHHHHHHHhccccc----ccCCCCccHHHHHHHHHHH
Confidence 00112335667777765421 0112457899999999998
Q ss_pred HhccCC-------CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHH------HHHHHhc
Q 008566 282 LGACVP-------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL------SKQLVHQ 348 (561)
Q Consensus 282 l~~~~~-------~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~l------a~~~~~~ 348 (561)
|..... .....|+++++|.++.|.- . ....+-.+++ +..+.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T 1q0p_A 113 MSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD---P---------------------ITVIDEIRDLLYIGKDRKNPRED 168 (223)
T ss_dssp HCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC---T---------------------HHHHHHHHHHTTCSCBTTBCCGG
T ss_pred hhccccccccccccCCeEEEEECCCCCCCCCC---h---------------------HHHHHHHHHHHhhhhhhhhcccC
Confidence 873111 1224588999998877630 0 0000111111 1222345
Q ss_pred CcEEEEEeecCCccChhcchhhhhccCc--EEEEcCCCC
Q 008566 349 GHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFG 385 (561)
Q Consensus 349 ~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f~ 385 (561)
||.|..+.++ ..++...|..++..+|| .++..+++.
T Consensus 169 ~i~i~~igvG-~~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 169 YLDVYVFGVG-PLVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp GEEEEEEECS-SCCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred CcEEEEEEec-CcCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 6655555553 35788899999999999 787777654
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.27 E-value=1.5e-05 Score=75.85 Aligned_cols=162 Identities=11% Similarity=0.054 Sum_probs=106.8
Q ss_pred CCcEEEEEEEcccchhhHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.+.-++||||.|.+....+.+++.+...++.|. ++.+||+|+|++..+.. .+. .
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~-~--------------------- 63 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 63 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-c---------------------
Confidence 367899999999998878888999999888774 68999999999876532 110 0
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHH-
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll- 282 (561)
+ ..+..+.+.|+.+... ....+.+|.||..|...+
T Consensus 64 --------------------------------~-----~~~~~~~~~i~~l~~~-------~G~~T~~~~aL~~a~~~l~ 99 (213)
T 1pt6_A 64 --------------------------------Y-----SSTEEVLVAAKKIVQR-------GGRQTMTALGTDTARKEAF 99 (213)
T ss_dssp --------------------------------C-----SSHHHHHHHHHTCCCC-------CCSSCCHHHHHHHHHHTTT
T ss_pred --------------------------------c-----CCHHHHHHHHHhccCC-------CCCcccHHHHHHHHHHHhc
Confidence 0 0122344455555321 111357999999998763
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC
Q 008566 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (561)
Q Consensus 283 ~~---~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~ 359 (561)
.. ..+.....|+++++|.++.|. -+.+.+.++.+.||.|..+.++.
T Consensus 100 ~~~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 100 TEARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp SGGGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECH
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 31 112334458888998765431 12356667778898777666643
Q ss_pred Cc----cC----hhcchhhhhc-cCcEEEEcCCCCc
Q 008566 360 DQ----VG----VAELKVAVEK-TGGLVVLSDSFGH 386 (561)
Q Consensus 360 ~~----~~----l~~l~~l~~~-TGG~v~~y~~f~~ 386 (561)
+. .+ ...|..++.. +||.++..+++..
T Consensus 149 ~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 149 SYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 21 11 3678899988 7899999887764
No 18
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.23 E-value=2.2e-05 Score=78.19 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=108.0
Q ss_pred CCcEEEEEEEcccchhh--H-HHHHHHHHHHhhcCCC---CceEEEEEECCeEEE-EEcCCCCCCCCeeEeecCCccCCH
Q 008566 128 VPPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLPD---NSLVGLITFGTLVQV-HELGGFGQIIPKTYVFKGSKDVSK 200 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--~-~~l~~~l~~~l~~l~~---~~~VglItf~~~V~~-y~l~~~~~~~~~~~v~~g~~~~~~ 200 (561)
.+.-++||||.|.+... . +.++++++..++.|+. +.+||||+|++.++. +.+. ...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~~~---------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLH-SDA---------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEEC-SSC----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcc-ccC----------------
Confidence 36779999999998764 3 5688999999998875 789999999987643 3333 110
Q ss_pred HHHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHH
Q 008566 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (561)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ 280 (561)
...++.+...|+.|.... .. ...+.+|.||..|..
T Consensus 83 ----------------------------------------~~~~~~l~~~i~~l~~~~--~~---~G~T~~~~aL~~a~~ 117 (281)
T 4hqf_A 83 ----------------------------------------SKNKEKALIIIKSLLSTN--LP---YGKTSLTDALLQVRK 117 (281)
T ss_dssp ----------------------------------------SSCHHHHHHHHHHHHHTT--GG---GCSCCHHHHHHHHHH
T ss_pred ----------------------------------------ccCHHHHHHHHHHHhhcc--CC---CCCccHHHHHHHHHH
Confidence 001234555666665310 01 124679999999987
Q ss_pred HHhcc--CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008566 281 LLGAC--VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (561)
Q Consensus 281 ll~~~--~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s 358 (561)
.+... .++....||++++|.++.+ .-..+.+..+.+.||.|-.+.++
T Consensus 118 ~l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 118 HLNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp HHHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 77631 1112345888888865411 11234566777889877666664
Q ss_pred CCccChhcchhhhhc--cCc--EEEEcCCCCc
Q 008566 359 LDQVGVAELKVAVEK--TGG--LVVLSDSFGH 386 (561)
Q Consensus 359 ~~~~~l~~l~~l~~~--TGG--~v~~y~~f~~ 386 (561)
. ..+-..|..++.. +|| .+++..+|+.
T Consensus 167 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 167 Q-GINVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp S-SCCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred C-ccCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 3 3677788888876 576 7888888875
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.23 E-value=1.3e-07 Score=88.34 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=104.7
Q ss_pred CCcEEEEEEEcccchh--hHHHHHHHHHHHhhcC-CCCceEEEEEECC-eEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l-~~~~~VglItf~~-~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.+..++||||+|.++. .++.+++++...++.+ +++.+||||+|++ ...+ -
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~---~----------------------- 57 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV---L----------------------- 57 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB---C-----------------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE---e-----------------------
Confidence 4778999999999873 4567899999988877 8899999999985 1100 0
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHh
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~ 283 (561)
+|. ......+...|+.|... ..+.++.||..|..++.
T Consensus 58 -----------------~~~-----------------~~~~~~~~~~i~~l~~~---------g~T~~~~al~~a~~~l~ 94 (189)
T 2x31_A 58 -----------------LQP-----------------SRSLTQTKRQLQGLPGG---------GGTPLASGMEMAMVTAK 94 (189)
T ss_dssp -----------------TTT-----------------CSCHHHHHHHHHHCCCC---------BCCCCHHHHHHHHHHHH
T ss_pred -----------------cCC-----------------CCCHHHHHHHHhcCCCC---------CCCCHHHHHHHHHHHHH
Confidence 000 01133466667776532 24568999999999987
Q ss_pred ccC-CCCCcEEEEEecCCCCCCCcccccCC-CCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCc
Q 008566 284 ACV-PGSGARILAFVGGPSTEGPAAIVSKN-LSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (561)
Q Consensus 284 ~~~-~~~ggkIi~F~~g~pt~G~G~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~ 361 (561)
... +.....|+++++|.++.|+..-...+ ..+ ++ . +++..+.+.||.|..+.++..
T Consensus 95 ~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~------~~-----~----------~~~~~~~~~gi~v~~ig~g~~- 152 (189)
T 2x31_A 95 QARSRGMTPTIALLTDGRGNIALDGTANRELAGE------QA-----T----------KVARAIRASGMPAVIIDTAMR- 152 (189)
T ss_dssp TCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTC------CC-----E----------EEEECTGGGGSCCTHHHHHHS-
T ss_pred hccCCCCceEEEEECCCCCCCCCCccccccchhH------HH-----H----------HHHHHHHHcCCeEEEEecCCC-
Confidence 421 12356899999999998753110000 000 00 0 001112234443333333222
Q ss_pred cChhcchhhhhccCcEEEEcCCCCccchHHHHHHHHh
Q 008566 362 VGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH 398 (561)
Q Consensus 362 ~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~~~ 398 (561)
+...|..|+..|||..++.++... +.|.+.++
T Consensus 153 -~~~~L~~iA~~~~G~~~~~~~~~~----~~~~~~~~ 184 (189)
T 2x31_A 153 -PNPALVDLARTMDAHYIALPRATA----HKMADVLG 184 (189)
T ss_dssp -SCSSSCSTTTEEEESSTTTHHHHH----HHHHHHHH
T ss_pred -CHHHHHHHHHhcCCeEEECCCcch----HHHHHHHH
Confidence 667899999999998766544332 34555553
No 20
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.20 E-value=0.00011 Score=68.41 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=105.2
Q ss_pred CCcEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHH
Q 008566 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
.+.-++|+||.|.+.. .++.+++.+...++.++ ++.+||+|+|++..+.. .+. .
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~------------------- 63 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-V------------------- 63 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecC-C-------------------
Confidence 3677999999999875 45678889998888886 35899999999866542 111 0
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l 281 (561)
...++.+...++.|+.. ...+.+|.||..|...
T Consensus 64 ---------------------------------------~~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 96 (189)
T 1atz_A 64 ---------------------------------------VPEKAHLLSLVDVMQRE--------GGPSQIGDALGFAVRY 96 (189)
T ss_dssp ---------------------------------------CCCHHHHHHHHHTCCCC--------CCCCCHHHHHHHHHHH
T ss_pred ---------------------------------------CCCHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHH
Confidence 01123456666666431 1346799999999988
Q ss_pred HhccC---CCCCcE-EEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEee
Q 008566 282 LGACV---PGSGAR-ILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (561)
Q Consensus 282 l~~~~---~~~ggk-Ii~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~ 357 (561)
+.... +....+ ++++++|.++.. ..+.+..+.+.||.|..+.+
T Consensus 97 l~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 97 LTSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp HHSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEc
Confidence 76311 112235 677888753210 02456667778987777766
Q ss_pred cCCccChhcchhhhhccCc-EEEEcCCCCc
Q 008566 358 ALDQVGVAELKVAVEKTGG-LVVLSDSFGH 386 (561)
Q Consensus 358 s~~~~~l~~l~~l~~~TGG-~v~~y~~f~~ 386 (561)
+. ..+...|..++..++| .++...+|..
T Consensus 144 G~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 144 GD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 53 4688889999998875 5676666653
No 21
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.16 E-value=6.8e-05 Score=70.36 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=92.9
Q ss_pred cEEEEEEEcccchh-------hHHHHHHHHHHHhhc---CCCCceEEEEEECCe-EEEEEcCCCCCCCCeeEeecCCccC
Q 008566 130 PVFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL-VQVHELGGFGQIIPKTYVFKGSKDV 198 (561)
Q Consensus 130 p~~vFvID~s~~~~-------~~~~l~~~l~~~l~~---l~~~~~VglItf~~~-V~~y~l~~~~~~~~~~~v~~g~~~~ 198 (561)
-..+|+||+|.++. ++...+.++...+.. ..+..+||||+|+.. -++
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~---------------------- 60 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV---------------------- 60 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE----------------------
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE----------------------
Confidence 35799999999875 355566665544332 245689999999852 111
Q ss_pred CHHHHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHH
Q 008566 199 SKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIA 278 (561)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A 278 (561)
++|+......+...|+.+... ....+|.||..|
T Consensus 61 --------------------------------------~~plT~d~~~i~~~L~~l~~~---------g~t~l~~aL~~A 93 (192)
T 2x5n_A 61 --------------------------------------LSTLTRDYGKFLSAMHDLPVR---------GNAKFGDGIQIA 93 (192)
T ss_dssp --------------------------------------EEEEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHH
T ss_pred --------------------------------------ecCCCCCHHHHHHHHHcCCCC---------CCchHHHHHHHH
Confidence 112222244667777765431 246799999999
Q ss_pred HHHHhccC-CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEee
Q 008566 279 ASLLGACV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (561)
Q Consensus 279 ~~ll~~~~-~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~ 357 (561)
..+|+... +....||++|+.+.-+.. ..-..++++.+.+.||.|+++.+
T Consensus 94 ~~~l~~~~~~~~~~riiil~~~~~~~~------------------------------~~~~~~~a~~lk~~gi~v~~Ig~ 143 (192)
T 2x5n_A 94 QLALKHRENKIQRQRIVAFVGSPIVED------------------------------EKNLIRLAKRMKKNNVAIDIIHI 143 (192)
T ss_dssp HHHHHTCSCTTSEEEEEEEECSCCSSC------------------------------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHhccccCCCceEEEEEECCCCCC------------------------------chhHHHHHHHHHHCCCEEEEEEe
Confidence 99998421 124567888887532100 01235788999999999999999
Q ss_pred cCCccChhcchhhhhcc
Q 008566 358 ALDQVGVAELKVAVEKT 374 (561)
Q Consensus 358 s~~~~~l~~l~~l~~~T 374 (561)
+.+.-+-. |..+++..
T Consensus 144 G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 144 GELQNESA-LQHFIDAA 159 (192)
T ss_dssp SCC---CH-HHHHHHHH
T ss_pred CCCCccHH-HHHHHHhc
Confidence 87665556 88888873
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.13 E-value=3.9e-05 Score=82.60 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=105.0
Q ss_pred cEEEEEEEcccchh--hHHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHHHH
Q 008566 130 PVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 130 p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l---~~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.-++||||.|.+.. +++.++++++..++.+ +++.+||||+|++..++.- +. .
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~-~--------------------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E--------------------- 59 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-S---------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-c---------------------
Confidence 45799999999874 4566788877777754 5689999999998665431 11 0
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHh
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~ 283 (561)
+....++.+.+.|+.|.... ......+.+|.||..|..++.
T Consensus 60 -----------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 60 -----------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp -----------------------------------GGGGCHHHHHHHHHHCCGGG----SCCTTCCCHHHHHHHHHHHHC
T ss_pred -----------------------------------ccccCHHHHHHHHHhCcCcc----ccccCccCHHHHHHHHHHHhh
Confidence 00122346777778776421 011245779999999999984
Q ss_pred ccC-------CCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHH---------HHHHHh
Q 008566 284 ACV-------PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL---------SKQLVH 347 (561)
Q Consensus 284 ~~~-------~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~l---------a~~~~~ 347 (561)
... ......|+++++|.++.|..... ..+.+ +..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 153 (497)
T 1rrk_A 101 WPDDVPPEGWNRTRHVIILMTDGLHNMGGDPIT---------------------------VIDEIRDLLYIGKDRKNPRE 153 (497)
T ss_dssp CC------CGGGCEEEEEEEECSCCCSSSCTHH---------------------------HHHHHHHHTTCSSCC-CCCG
T ss_pred hhhccccccccccceEEEEEeCCCcccCCChhH---------------------------HHHHHHHHhhhhcccccchh
Confidence 211 12345788999999887641100 00111 111223
Q ss_pred cCcEEEEEeecCCccChhcchhhhhccCc--EEEEcCCCC
Q 008566 348 QGHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFG 385 (561)
Q Consensus 348 ~~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f~ 385 (561)
.||.|..+.++ +.++...|..|+..+|| .++..++++
T Consensus 154 ~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 192 (497)
T 1rrk_A 154 DYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDME 192 (497)
T ss_dssp GGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCHH
T ss_pred cCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 36655555543 34788899999999999 777776544
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.11 E-value=2.9e-05 Score=83.98 Aligned_cols=170 Identities=16% Similarity=0.069 Sum_probs=107.4
Q ss_pred CCcEEEEEEEcccchhh--HHHHHHHHHHHhhcC---CCCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHH
Q 008566 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l---~~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
.+.-++||||.|.+... ++.++++++..++.| +++.+||||+|++..++.- +. ..
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------ 68 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVL-ND------------------ 68 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTT-SG------------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEecc-CC------------------
Confidence 36779999999998754 566888888888877 7899999999998766431 11 00
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l 281 (561)
....++.+.+.|+.|.... ......+.++.||..|..+
T Consensus 69 --------------------------------------~~~~~~~~~~~l~~l~~~~----~~~~ggT~~~~aL~~a~~~ 106 (509)
T 2odp_A 69 --------------------------------------NSRDMTEVISSLENANYKD----HENGTGTNTYAALNSVYLM 106 (509)
T ss_dssp --------------------------------------GGGCHHHHHHHHHTCCGGG----GTTCCSCCHHHHHHHHHHH
T ss_pred --------------------------------------CCCCHHHHHHHHHhccccc----CCCCCCccHHHHHHHHHHH
Confidence 0112335666777765421 0112456799999999998
Q ss_pred HhccCC----------CCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHH-----HH
Q 008566 282 LGACVP----------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQ-----LV 346 (561)
Q Consensus 282 l~~~~~----------~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~-----~~ 346 (561)
+..... .....|+++++|.++.|. .. . +.-+.+... ..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~-----------------------~---~~~~~~~~~~~~~~~~ 159 (509)
T 2odp_A 107 MNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP-----------------------K---TAVDHIREILNINQKR 159 (509)
T ss_dssp HHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT-----------------------H---HHHHHHHHHTTCCSTT
T ss_pred HhhcccccccccccccccceEEEEECCCCccCCC-Ch-----------------------h---HHHHHHHHHhhccccc
Confidence 852100 122458999999887652 00 0 000111111 11
Q ss_pred hcCcEEEEEeecCCccChhcchhhhhccCcE--EEEcCCCC
Q 008566 347 HQGHVLDLFACALDQVGVAELKVAVEKTGGL--VVLSDSFG 385 (561)
Q Consensus 347 ~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~--v~~y~~f~ 385 (561)
+.|+.|..+.++.+..+..+|..|+..+||. +++.++++
T Consensus 160 ~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~ 200 (509)
T 2odp_A 160 NDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTK 200 (509)
T ss_dssp GGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHH
T ss_pred cCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHH
Confidence 5667666666654438999999999999998 66555543
No 24
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.05 E-value=0.00014 Score=67.04 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=99.9
Q ss_pred CcEEEEEEEcccchhh-HHHHHHHHHHHhhc-CCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHHH
Q 008566 129 PPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQ 206 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~-~~~l~~~l~~~l~~-l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~~ 206 (561)
+.-++|+||.|.+... ...+++.+++.++. +.++.+||+|+|++..+..-
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~---------------------------- 58 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM---------------------------- 58 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE----------------------------
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe----------------------------
Confidence 5668999999998754 33345555555554 34689999999997655421
Q ss_pred hccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHHhc-c
Q 008566 207 LNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA-C 285 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll~~-~ 285 (561)
|+.+.++.+...|+.|+.. .+ ...+.+|.||..|...+.. .
T Consensus 59 --------------------------------~l~~~~~~~~~~i~~l~~~---~~---~g~T~~~~al~~a~~~l~~~~ 100 (185)
T 3n2n_F 59 --------------------------------KLTEDREQIRQGLEELQKV---LP---GGDTYMHEGFERASEQIYYEN 100 (185)
T ss_dssp --------------------------------EEECCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------ccCCCHHHHHHHHHHHhhh---cC---CCCccHHHHHHHHHHHHhhcc
Confidence 0011233566667777642 11 2346799999999987621 0
Q ss_pred --CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCccC
Q 008566 286 --VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVG 363 (561)
Q Consensus 286 --~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~~ 363 (561)
.......|+++++|.++.++ ..-..+.+..+.+.||.|..+.++ ..+
T Consensus 101 ~~~~~~~~~iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~ 149 (185)
T 3n2n_F 101 RQGYRTASVIIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--DFN 149 (185)
T ss_dssp TTCBCEEEEEEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--SCC
T ss_pred ccCCCCCcEEEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--cCC
Confidence 01123478888887653221 001135677788888866666664 678
Q ss_pred hhcchhhhhccCcEEEEcCC-CC
Q 008566 364 VAELKVAVEKTGGLVVLSDS-FG 385 (561)
Q Consensus 364 l~~l~~l~~~TGG~v~~y~~-f~ 385 (561)
-.+|..++.. +|.+|+..+ |.
T Consensus 150 ~~~L~~iA~~-~~~~~~~~~~~~ 171 (185)
T 3n2n_F 150 ETQLARIADS-KDHVFPVNDGFQ 171 (185)
T ss_dssp HHHHTTTSSS-GGGEEEHHHHHH
T ss_pred HHHHHHHhCC-CCCeEEeccHHH
Confidence 8889999864 577877765 54
No 25
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.01 E-value=5.3e-05 Score=70.79 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=104.7
Q ss_pred CCcEEEEEEEcccchhh--HHHHHHHHHHHhhcC-CCCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l-~~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.+.-++|+||.|.+... .+..++.++..++.+ +++.+||||+|++..+.. .+. ..
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---------------------~~ 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---------------------EF 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---------------------HH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---------------------cc
Confidence 36779999999998754 456788899999988 789999999999875542 111 00
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH-HHH
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-SLL 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~-~ll 282 (561)
.. . +.+.+.|+.|.. ....+.++.||..|. .++
T Consensus 67 ~~---~-----------------------------------~~~~~~i~~l~~--------~~g~T~~~~al~~a~~~l~ 100 (198)
T 1n3y_A 67 RR---S-----------------------------------SNPLSLLASVHQ--------LQGFTYTATAIQNVVHRLF 100 (198)
T ss_dssp HH---C-----------------------------------SSGGGGGTTCCC--------CCSCBCHHHHHHHHHTTTT
T ss_pred CC---H-----------------------------------HHHHHHHhcCcC--------CCCCchHHHHHHHHHHHHh
Confidence 00 0 001112223221 113567999999998 444
Q ss_pred hcc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC
Q 008566 283 GAC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (561)
Q Consensus 283 ~~~---~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~ 359 (561)
... .+.....|+++++|.++.++- . +.+.+..+.+.||.|..+.++.
T Consensus 101 ~~~~~~r~~~~~~iillTDG~~~~~~~----------------------~--------~~~~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 101 HASYGARRDAAKILIVITDGKKEGDSL----------------------D--------YKDVIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------HHHHHHHHHHTTCEEEEEEESG
T ss_pred CcccCCCCCCceEEEEECCCCCCCCcc----------------------c--------HHHHHHHHHHCCCEEEEEEccc
Confidence 421 123445789999998763320 0 1245667788999888887765
Q ss_pred Cc---cChhcchhhhhccCcEE-EEcCCCC
Q 008566 360 DQ---VGVAELKVAVEKTGGLV-VLSDSFG 385 (561)
Q Consensus 360 ~~---~~l~~l~~l~~~TGG~v-~~y~~f~ 385 (561)
+. .+...|..++..|||.. +..+++.
T Consensus 151 ~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~ 180 (198)
T 1n3y_A 151 AFQNRNSWKELNDIASKPSQEHIFKVEDFD 180 (198)
T ss_dssp GGGSSTTHHHHHHHSCSSSGGGEEEESSGG
T ss_pred cccccccHHHHHHHHcCCCcccEEEeCCHH
Confidence 43 26789999999999974 6666654
No 26
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.97 E-value=0.00037 Score=68.72 Aligned_cols=163 Identities=13% Similarity=0.016 Sum_probs=106.0
Q ss_pred CcEEEEEEEcccchhhH---HHHHHHHHHHhhcCC---CCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHH
Q 008566 129 PPVFMFVVDTCIIEEEM---SFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~~---~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
+.-++||||.|.+.... +.++++++..++.|. ++.+||||+|++.....- +. .
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~------------------- 77 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLG-S------------------- 77 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecC-C-------------------
Confidence 56789999999987543 357888999898887 689999999998765421 11 0
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l 281 (561)
+ ....++.+...|+.|+... .+ ...+.+|.||..|..+
T Consensus 78 ----------------------------------~---~~~~~~~~~~~i~~l~~~~--~~---~G~T~~~~AL~~a~~~ 115 (266)
T 4hqo_A 78 ----------------------------------G---QSIDKRQALSKVTELRKTY--TP---YGTTSMTAALDEVQKH 115 (266)
T ss_dssp ----------------------------------H---HHHCHHHHHHHHHHHHHHC--CC---CSCCCHHHHHHHHHHH
T ss_pred ----------------------------------C---CccCHHHHHHHHHHhhhcc--CC---CCCCCHHHHHHHHHHH
Confidence 0 0011335666777775210 01 1246799999999988
Q ss_pred Hhcc--CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecC
Q 008566 282 LGAC--VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (561)
Q Consensus 282 l~~~--~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~ 359 (561)
+... .++....||++++|.++.+ .-..+.+.++.+.||.|-.+.++.
T Consensus 116 l~~~~~r~~~~~~iIllTDG~~~d~-------------------------------~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 116 LNDRVNREKAIQLVILMTDGVPNSK-------------------------------YRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp HHTTCSCTTSEEEEEEEECSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEECSS
T ss_pred HhhccccCCCCeEEEEEccCCCCCc-------------------------------hHHHHHHHHHHHCCCEEEEEecCc
Confidence 8731 1122346888888865410 112356777788898766666643
Q ss_pred CccChhcchhhhhcc--Cc--EEEEcCCCC
Q 008566 360 DQVGVAELKVAVEKT--GG--LVVLSDSFG 385 (561)
Q Consensus 360 ~~~~l~~l~~l~~~T--GG--~v~~y~~f~ 385 (561)
..+-..|..++... +| .++++.+|+
T Consensus 165 -~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 165 -GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp -SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred -ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 46767778888774 33 777777765
No 27
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.91 E-value=9.6e-05 Score=68.94 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=102.2
Q ss_pred CCcEEEEEEEcccchhh--HHHHHHHHHHHhhcCC-CCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP-DNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l~-~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (561)
.+.-++||||.|.+... ++.+++.++..++.|. ++.+||+|+|++..+.. +. . ....
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~-~~---l----------------~~~~ 63 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH-FT---F----------------KEFQ 63 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE-EC---H----------------HHHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE-Ee---c----------------CCcC
Confidence 36789999999998754 4567888888888774 67899999999876532 11 0 0000
Q ss_pred HHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHH-HHh
Q 008566 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLG 283 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~-ll~ 283 (561)
. ++.+...|+.|+.. ...+.+|.||..|.. ++.
T Consensus 64 ~--------------------------------------~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~l~~ 97 (194)
T 1mf7_A 64 N--------------------------------------NPNPRSLVKPITQL--------LGRTHTATGIRKVVRELFN 97 (194)
T ss_dssp H--------------------------------------SCCHHHHHTTCCCC--------CSCBCHHHHHHHHHHTTTS
T ss_pred C--------------------------------------HHHHHHHHHhCcCC--------CCCchHHHHHHHHHHHhcC
Confidence 0 01234445555321 135679999999986 433
Q ss_pred c---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCC
Q 008566 284 A---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (561)
Q Consensus 284 ~---~~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~ 360 (561)
. ..++....|+++++|.++..+- . +.+.+.++.+.||.|..+.++.+
T Consensus 98 ~~~~~r~~~~~~iillTDG~~~~d~~----------------------~--------~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 98 ITNGARKNAFKILVVITDGEKFGDPL----------------------G--------YEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------GGGTHHHHHHTTEEEEEEEESGG
T ss_pred cccCCCCCCCeEEEEEcCCCCCCCch----------------------h--------hHHHHHHHHHCCCEEEEEEeccc
Confidence 1 0112234588899998761110 0 01234556778887777766543
Q ss_pred c---cChhcchhhhhcc-CcEEEEcCCCCc
Q 008566 361 Q---VGVAELKVAVEKT-GGLVVLSDSFGH 386 (561)
Q Consensus 361 ~---~~l~~l~~l~~~T-GG~v~~y~~f~~ 386 (561)
. .+..+|..++..+ +|.++..+++..
T Consensus 148 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 148 FRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp GCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 2 1368899999886 588888887664
No 28
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.78 E-value=0.00089 Score=62.75 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCcEEEEEEEcccchh--hHHHHHHHHHHHhhcC---CCCceEEEEEECCeEEE
Q 008566 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQV 176 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l---~~~~~VglItf~~~V~~ 176 (561)
.+--++|+||.|.+.. ..+.++++++..++.| +++.|||||+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 4677999999999865 3566889999999888 57899999999987654
No 29
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.75 E-value=0.00058 Score=62.90 Aligned_cols=154 Identities=11% Similarity=0.144 Sum_probs=96.5
Q ss_pred CcEEEEEEEcccchhh--HHHHHHHHHHHhhcCC-CCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHH
Q 008566 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP-DNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l~-~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (561)
+.-++|+||.|.+... ++.+++.++..++.+. ++.+||+|+|++.++.. +. . ....
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~---l----------------~~~~- 60 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD---F----------------SDYV- 60 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC---H----------------HHHH-
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec---C----------------cccC-
Confidence 4568999999998654 5668888888888884 56799999999876542 11 0 0000
Q ss_pred HhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHH-HHhc
Q 008566 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLGA 284 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~-ll~~ 284 (561)
.++.+..+++.|... . ..+.+|.||..|.. ++..
T Consensus 61 -------------------------------------~~~~~~~~~~~i~~~----~----g~T~~~~aL~~a~~~~~~~ 95 (179)
T 1mjn_A 61 -------------------------------------KRKDPDALLKHVKHM----L----LLTNTFGAINYVATEVFRE 95 (179)
T ss_dssp -------------------------------------HHCCHHHHHTTCCCC----C----BCCCHHHHHHHHHHHTSSG
T ss_pred -------------------------------------CHHHHHHHHHhcccC----C----CCChHHHHHHHHHHHhccc
Confidence 011244556665442 1 35679999999985 5442
Q ss_pred c---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCCc
Q 008566 285 C---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (561)
Q Consensus 285 ~---~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~ 361 (561)
. .++..-.|+++++|.++.|. . . + .+.|+.|-.+..+. .
T Consensus 96 ~~g~r~~~~~~iillTDG~~~~~~------~-----------------~--~------------~~~~i~i~~igvG~-~ 137 (179)
T 1mjn_A 96 ELGARPDATKVLIIITDGEATDSG------N-----------------I--D------------AAKDIIRYIIGIGK-H 137 (179)
T ss_dssp GGTCCTTSEEEEEEEESSCCSSCS------C-----------------C--G------------GGTTSEEEEEEESG-G
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCc------c-----------------h--H------------HHCCCEEEEEEccc-c
Confidence 1 11122358889999876542 0 0 0 13466555555543 2
Q ss_pred cC----hhcchhhhhccCc-EEEEcCCCCc
Q 008566 362 VG----VAELKVAVEKTGG-LVVLSDSFGH 386 (561)
Q Consensus 362 ~~----l~~l~~l~~~TGG-~v~~y~~f~~ 386 (561)
.+ ..+|..++..+|| .+++.++|..
T Consensus 138 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 138 FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 33 3789999999987 5777777764
No 30
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.70 E-value=0.00018 Score=81.37 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=109.0
Q ss_pred CcEEEEEEEcccchhh--HHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEEE-cCCCCCCCCeeEeecCCccCCHHH
Q 008566 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQ 202 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y~-l~~~~~~~~~~~v~~g~~~~~~~~ 202 (561)
+.-++||||.|.+... ++.++++++..++.|. .+.|||||+|++...+.- +. ..
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------- 302 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-EA------------------- 302 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-SG-------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeec-cc-------------------
Confidence 5569999999998743 5667888888887764 468999999998654321 11 00
Q ss_pred HHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHH
Q 008566 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (561)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll 282 (561)
-...++.+.+.|+.|+.. .......+.+|.||..|..+|
T Consensus 303 -------------------------------------~~~~~~~~~~~i~~l~~~----~~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 303 -------------------------------------DSSNADWVTKQLNEINYE----DHKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp -------------------------------------GGGCHHHHHHHHTTCCGG----GGSSSCCCCHHHHHHHHHHHH
T ss_pred -------------------------------------CCcCHHHHHHHHHhcccc----cccCCCChHHHHHHHHHHHHH
Confidence 001233566666666521 000124567999999999998
Q ss_pred hccC-CCC------CcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEE
Q 008566 283 GACV-PGS------GARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLF 355 (561)
Q Consensus 283 ~~~~-~~~------ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf 355 (561)
.... ... .-.||++++|.+|.|..-.... +.++.. ......++.+.+.||.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~~---------------~~~~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 342 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDL---------------LYIGKDRKNPREDYLDVYVF 403 (741)
T ss_dssp CCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHHH---------------TTCSSCTTCCCGGGEEEEEE
T ss_pred hhhhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHHH---------------hhcccccccccccCeeEEEE
Confidence 3110 011 1258899999988774111100 000000 00011222344556655555
Q ss_pred eecCCccChhcchhhhhccCcE--EEEcCCCCccchHHHHHHHH
Q 008566 356 ACALDQVGVAELKVAVEKTGGL--VVLSDSFGHAVFKDSVRRVF 397 (561)
Q Consensus 356 ~~s~~~~~l~~l~~l~~~TGG~--v~~y~~f~~~~~~~~l~~~~ 397 (561)
.++ +.++-.+|..|+..+||. ++..++++. +.+-+.+++
T Consensus 404 gvG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~~--L~~~~~~l~ 444 (741)
T 3hrz_D 404 GVG-PLVNQVNINALASKKDNEQHVFKVKDMEN--LEDVFYQMI 444 (741)
T ss_dssp ECS-SSCCHHHHHHHSCCCTTCCCEECBSSHHH--HHHHHHHHH
T ss_pred eCC-CcCCHHHHHHHhcCCCCcceEEEeCCHHH--HHHHHHHhh
Confidence 443 347888999999999995 776666542 333444444
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.65 E-value=0.0015 Score=59.90 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCcEEEEEEEcccchh--hHHHHHHHHHHHhhcCC---CCceEEEEEECCeEEEE-EcCCCCCCCCeeEeecCCccCCHH
Q 008566 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~--~~~~l~~~l~~~l~~l~---~~~~VglItf~~~V~~y-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (561)
.+.-++|+||.|.+.. +.+.+++.+...++.++ +..+||+|+|++..... .+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~------------------- 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-S------------------- 75 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-C-------------------
Confidence 4678999999999874 45668888888888885 45899999999876532 111 0
Q ss_pred HHHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 008566 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (561)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~l 281 (561)
+ ....++.+.+.|+.|+.. ...+.+|.||..|...
T Consensus 76 ----------------------------------~---~~~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 76 ----------------------------------P---NAVDKQLAAHAVLDMPYK--------KGSTNTSDGLKACKQI 110 (178)
T ss_dssp ----------------------------------G---GGSCHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHH
T ss_pred ----------------------------------C---CccCHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHH
Confidence 0 001233566677776521 1246799999999987
Q ss_pred Hhcc----CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEee
Q 008566 282 LGAC----VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (561)
Q Consensus 282 l~~~----~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~ 357 (561)
+... .+.....|+++++|.++.|. -..+.+.++.+.||.|..+.+
T Consensus 111 l~~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 111 LFTGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp HHHCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEEC
T ss_pred hcCcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEc
Confidence 5321 12334578888998765431 123466677778887666655
Q ss_pred cCCccChhcc
Q 008566 358 ALDQVGVAEL 367 (561)
Q Consensus 358 s~~~~~l~~l 367 (561)
+ +.+|-..|
T Consensus 160 G-~~~~~~~l 168 (178)
T 2xgg_A 160 G-HYVAAALV 168 (178)
T ss_dssp C---------
T ss_pred C-CcCCHHHH
Confidence 4 33454433
No 32
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.19 E-value=0.00053 Score=80.59 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=101.3
Q ss_pred CcEEEEEEEcccchhh--HHHHHHHHHHHhhcCCCC-ceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHHHH
Q 008566 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLPDN-SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~--~~~l~~~l~~~l~~l~~~-~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (561)
+.-++||||.|.+... ++.+++.++..++.+.++ .|||||+|++..++.- . . ....
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-~---l----------------t~~~- 188 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T---F----------------EEFR- 188 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-C---S----------------HHHH-
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-c---C----------------cccC-
Confidence 4568999999998654 467899999999998764 8999999998765431 1 0 0000
Q ss_pred HhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHHHH-hc
Q 008566 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL-GA 284 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~ll-~~ 284 (561)
+. +.+..+++.|+.. ...+.+|.||..|...+ ..
T Consensus 189 --~~-----------------------------------~~l~~ai~~i~~~--------gG~T~~g~AL~~a~~~lf~~ 223 (1095)
T 3k6s_A 189 --RS-----------------------------------SNPLSLLASVHQL--------QGFTYTATAIQNVVHRLFHA 223 (1095)
T ss_dssp --SC-----------------------------------SCGGGGTTTCCCC--------CSCBCHHHHHHHHHTTTTST
T ss_pred --CH-----------------------------------HHHHHHHhhhhcc--------cCCChHHHHHHHHHHhhccc
Confidence 00 0112223333321 13467999999997643 21
Q ss_pred c---CCCCCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHHhcCcEEEEEeecCC-
Q 008566 285 C---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD- 360 (561)
Q Consensus 285 ~---~~~~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~- 360 (561)
. .++..-.||++|+|.++..+ . -+.+.+.++.+.||.|-.+.++..
T Consensus 224 ~~g~R~~~~kviIllTDG~~~~d~-----------------------~-------~~~~~a~~~r~~GI~i~aIGVG~~~ 273 (1095)
T 3k6s_A 224 SYGARRDAAKILIVITDGKKEGDS-----------------------L-------DYKDVIPMADAAGIIRYAIGVGLAF 273 (1095)
T ss_dssp TTTCCSSSEEEEEEEESSCCBSCS-----------------------S-------CHHHHHHHHHHHCEEECCEEBSSGG
T ss_pred cccCCCCCCeEEEEEeCCCcCCCc-----------------------h-------hHHHHHHHHHHCCCEEEEEeccccc
Confidence 0 01112257888888654211 0 123556677778886655555443
Q ss_pred --ccChhcchhhhhccCc-EEEEcCCCCc
Q 008566 361 --QVGVAELKVAVEKTGG-LVVLSDSFGH 386 (561)
Q Consensus 361 --~~~l~~l~~l~~~TGG-~v~~y~~f~~ 386 (561)
.++..+|..++..++| +++..++|+.
T Consensus 274 ~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 274 QNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp GSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred ccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 2588999999999887 7777777754
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.14 E-value=0.003 Score=69.13 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=35.8
Q ss_pred cEEEEEEEcccchh--------hHHHHHHHHHHHhhc---CCCCceEEEEEECCe
Q 008566 130 PVFMFVVDTCIIEE--------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL 173 (561)
Q Consensus 130 p~~vFvID~s~~~~--------~~~~l~~~l~~~l~~---l~~~~~VglItf~~~ 173 (561)
-..||+||+|.++. .+..+++++...++. ..++.+||||+|+..
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 57899999999864 356678888888883 577899999999964
No 34
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.76 E-value=0.045 Score=52.53 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCcEEEEEEEcccchh-hHHHHHHHHHHHhhcCC---CCceEEEEEECC
Q 008566 128 VPPVFMFVVDTCIIEE-EMSFLKSALSQAIDLLP---DNSLVGLITFGT 172 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~-~~~~l~~~l~~~l~~l~---~~~~VglItf~~ 172 (561)
.+.-+||+||+|.++. ++..++.+++..+..++ ++.+|+||+|+.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~ 181 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPG 181 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESC
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECC
Confidence 3678999999999864 47788999998888765 468999999996
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.043 Score=62.84 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred CCcEEEEEEEcccchhh--------HHHHHHHHHHHhhcCC--CCceEEEEEECCeEE
Q 008566 128 VPPVFMFVVDTCIIEEE--------MSFLKSALSQAIDLLP--DNSLVGLITFGTLVQ 175 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--------~~~l~~~l~~~l~~l~--~~~~VglItf~~~V~ 175 (561)
.+.-+|||||+|.++.. ++.++++++..++.|. ++.|||||+|++.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 57779999999999743 3457788888887664 479999999998653
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.26 E-value=0.66 Score=51.48 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=105.9
Q ss_pred CCcEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~-~~~---l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.|-=.+|++|+|.++.. ++. +...|.+.|..+.++.|+||..|.+... . + -.+..+ +.+
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~----~-P-----~~~~~p-------~~~ 172 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----S-P-----YMYISP-------PEA 172 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSS----T-T-----TSCCCS-------TTT
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecccc----C-C-----ccccCh-------hhh
Confidence 46778999999999754 333 3455666666777899999999987432 1 0 000000 000
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH--HH
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~--~l 281 (561)
.. .|-...-+.+. .+..-...+++.+....+.+.++.+.-. .+...|...+-+.+++|. .-
T Consensus 173 ---~~------~pc~~~~~~c~----~~f~f~~~l~lt~~~~~f~~~v~~~~is----gn~D~PE~g~dAl~qa~~c~~~ 235 (690)
T 3fcs_B 173 ---LE------NPCYDMKTTCL----PMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCDEK 235 (690)
T ss_dssp ---TT------CTTSSSSSCCC----CCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHHH
T ss_pred ---cc------CCCcCCCCCCC----CCccceeecccCCCHHHHHHHhhceecc----CCCCCCchHHHHHHHHhhcccc
Confidence 00 00000000111 0111233467777666677777665432 222334444444444442 33
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCccCCCCCCCCCCccchhhHH--H--HHHHHHHHHhcCcEEEEE
Q 008566 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLDLF 355 (561)
Q Consensus 282 l~~~~~~~ggkIi~F~~g~pt--~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~--f--Y~~la~~~~~~~isvdlf 355 (561)
++ -+...-|+|||++-.+- -|.|++...-..+..+-|-+. + ..+..+.. | -..|..++.+++|. =||
T Consensus 236 ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~--~--~~y~~s~~~DypSi~ql~~~l~~~~i~-~if 308 (690)
T 3fcs_B 236 IG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGS--D--NHYSASTTMDYPSLGLMTEKLSQKNIN-LIF 308 (690)
T ss_dssp HT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCT--T--CBBGGGGTSCCCCHHHHHHHHHHTTCE-EEE
T ss_pred cC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeecC--C--CccccccccCCCCHHHHHHHHHHcCCe-EEE
Confidence 33 22446788888776554 477776543333333333321 1 11122111 1 35677888888884 366
Q ss_pred eecCCccChhcchhhhh-ccCcEEEEcC
Q 008566 356 ACALDQVGVAELKVAVE-KTGGLVVLSD 382 (561)
Q Consensus 356 ~~s~~~~~l~~l~~l~~-~TGG~v~~y~ 382 (561)
+......++ ...|+. .+|+.+-...
T Consensus 309 avt~~~~~~--y~~l~~~i~~s~v~~l~ 334 (690)
T 3fcs_B 309 AVTENVVNL--YQNYSELIPGTTVGVLS 334 (690)
T ss_dssp EEEGGGHHH--HHHHHHHSTTCEEEEEC
T ss_pred EEeCCchhh--HHHHHhhcCCceeeeec
Confidence 666554443 234443 3455555544
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=94.89 E-value=4.4 Score=42.57 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=109.0
Q ss_pred CCcEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHH-
Q 008566 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ- 202 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~-~~~---l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~- 202 (561)
.|-=.+|++|+|.++.. ++. +...|.+.|..+..+.|+||..|-+... . |-.+. +.+.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v----~------P~~~~-------~p~~~ 172 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----S------PYMYI-------SPPEA 172 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSS----T------TTSCC-------CSHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecccc----C------ccccC-------Chhhh
Confidence 46778999999999754 333 4566777777788899999999876421 0 00000 0112
Q ss_pred HHHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH--H
Q 008566 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (561)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~--~ 280 (561)
++....-. -+.+. .+..-....++.+....+.+.+..+.-. .+...|...+-+-+++|. .
T Consensus 173 l~nPc~~~----------~~~c~----p~f~fr~~l~LT~d~~~F~~~V~~~~iS----Gn~D~PEgg~dAl~qaavC~~ 234 (472)
T 3t3p_B 173 LENPCYDM----------KTTCL----PMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCDE 234 (472)
T ss_dssp HHCTTTTT----------TSCCC----CCCSEEEEEEEESCHHHHHHHHHHCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred hcCCCccc----------ccCCC----CCcceeEeeccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhcchh
Confidence 22111000 00111 0111234577887777888888875442 222334444544455553 2
Q ss_pred HHhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCccCCCCCCCCCCccchhhH--H--HHHHHHHHHHhcCcEEEE
Q 008566 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV--K--FYDALSKQLVHQGHVLDL 354 (561)
Q Consensus 281 ll~~~~~~~ggkIi~F~~g~pt--~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~--~--fY~~la~~~~~~~isvdl 354 (561)
-++ -+...-|+++|++-.+- .|.|++..--..+..+-|-+. +. .+..+. + -...|...+.+++|. =|
T Consensus 235 ~ig--WR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~--~~--~Y~~s~~~DYPSv~ql~~~l~e~nI~-~I 307 (472)
T 3t3p_B 235 KIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGS--DN--HYSASTTMDYPSLGLMTEKLSQKNIN-LI 307 (472)
T ss_dssp HHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCT--TC--BBTTTTTSCCCCHHHHHHHHHHTTCE-EE
T ss_pred hcC--CCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECC--CC--cccccccCCCCCHHHHHHHHHhcCcc-EE
Confidence 232 22456788888776553 578877644333333344321 10 111111 1 134677777888874 47
Q ss_pred EeecCCccChhcchhhhhcc-CcEEEEc
Q 008566 355 FACALDQVGVAELKVAVEKT-GGLVVLS 381 (561)
Q Consensus 355 f~~s~~~~~l~~l~~l~~~T-GG~v~~y 381 (561)
|+.+....++ ...|+.+- |+.+-.-
T Consensus 308 FAVt~~~~~~--Y~~L~~~ip~s~vg~L 333 (472)
T 3t3p_B 308 FAVTENVVNL--YQNYSELIPGTTVGVL 333 (472)
T ss_dssp EEECGGGHHH--HHHHHHTSTTCEEEEC
T ss_pred EEEeccchhH--HHHHHHhCCCceeeec
Confidence 8776654443 23444333 4444343
No 38
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.46 E-value=0.65 Score=50.98 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=46.6
Q ss_pred CcchhHHHHHHHHHHhccCCC-CCcEEEEEecCCCCCCCcccccCCCCCCccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 008566 268 TRCTGTALSIAASLLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV 346 (561)
Q Consensus 268 ~~c~G~Al~~A~~ll~~~~~~-~ggkIi~F~~g~pt~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~ 346 (561)
...+|.||.+|..++...... ..=+|++||+|--+.|. + .....-....|..+.
T Consensus 140 ~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l~ 194 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDLR 194 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHHH
Confidence 467999999999999853222 24588899987533321 0 111123457889999
Q ss_pred hcCcEEEEEeecCC
Q 008566 347 HQGHVLDLFACALD 360 (561)
Q Consensus 347 ~~~isvdlf~~s~~ 360 (561)
..||.|.+|.++.+
T Consensus 195 ~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHTEEEEEEEBCCT
T ss_pred hcCcEEEEEecCCC
Confidence 99999999988654
No 39
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.06 E-value=0.16 Score=54.94 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=29.9
Q ss_pred CCcEEEEEEEcccchhh------HHHHHHHHHHHhhcCCCCceEEEEEECCe
Q 008566 128 VPPVFMFVVDTCIIEEE------MSFLKSALSQAIDLLPDNSLVGLITFGTL 173 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~------~~~l~~~l~~~l~~l~~~~~VglItf~~~ 173 (561)
.+..++|+||+|.++.. +.....++..++..+.++.+||||+|++.
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~ 418 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE 418 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 36789999999998753 22222222333344456779999999963
No 40
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=93.14 E-value=2 Score=45.40 Aligned_cols=283 Identities=11% Similarity=0.085 Sum_probs=137.1
Q ss_pred CCcEEEEEEEcccchhh-HHHH---HHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE-MSFL---KSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~-~~~l---~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.|-=.+|++|+|.++.. ++.| ...|.+.|..+..+.|+||..|-+..- . + -. ..+.+.+
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v----~-P-----~~-------~~~p~~l 193 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV----L-P-----FV-------STVPSKL 193 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS----T-T-----TS-------CCCHHHH
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc----C-C-----cc-------cCCHHHh
Confidence 46778999999999854 3434 456667777777899999999876421 1 0 00 0112333
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH--HH
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~--~l 281 (561)
+....-. -..+. .+..-...+++.+....+.+.+..+.-. .+...|...+-+-+++|. .-
T Consensus 194 ~~PC~~~----------~~~c~----p~f~fr~~l~LT~d~~~F~~~V~~~~iS----GnlD~PEggfDAlmQaavC~~~ 255 (503)
T 3v4v_B 194 RHPCPTR----------LERCQ----SPFSFHHVLSLTGDAQAFEREVGRQSVS----GNLDSPEGGFDAILQAALCQEQ 255 (503)
T ss_dssp HCCSSCS----------SSCCC----CCCSEEEEEEEESCSHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHHH
T ss_pred cCCCcCC----------CCCCC----CCcceEEEEEecCCHHHHHHHHhhcCcc----CCCCCCchHHHHHHHHhhcccc
Confidence 2211000 00111 0111233567776666677777654331 222334444544455553 23
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCccCCCCCCCCCCccchhhHH----HHHHHHHHHHhcCcEEEEE
Q 008566 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDLF 355 (561)
Q Consensus 282 l~~~~~~~ggkIi~F~~g~pt--~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~----fY~~la~~~~~~~isvdlf 355 (561)
++ +. . ..|+++|++-.+- .|.|++..--..+..+-|-+. + ..+..+.. -...|...+.+++|. =||
T Consensus 256 Ig-WR-~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~--~--~~Yt~s~~~DYPSv~ql~~kL~ennI~-~IF 327 (503)
T 3v4v_B 256 IG-WR-N-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDS--N--GLYSRSTEFDYPSVGQVAQALSAANIQ-PIF 327 (503)
T ss_dssp HT-CC-S-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCT--T--SBBGGGGGSCCCCHHHHHHHHHHHTEE-EEE
T ss_pred cC-CC-c-ceEEEEEECCCCcCcCCCccccceecCCCCCeEECC--C--CccccccccCCCCHHHHHHHHHhcCCe-EEE
Confidence 33 33 3 6799998876553 577776544333333444321 1 11211111 134677777888883 478
Q ss_pred eecCCccChhcchhhhhcc-CcEEEEcCCCCccchHHHHHHHHhccccCcCceeeeEEEEEe-cCCceEEeEEcCccccC
Q 008566 356 ACALDQVGVAELKVAVEKT-GGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINC-SKDIKVQGIIGPCASLE 433 (561)
Q Consensus 356 ~~s~~~~~l~~l~~l~~~T-GG~v~~y~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vr~-S~gl~i~~~~G~~~~~~ 433 (561)
+.+....++ ...|+..- |+.+-.-.. +.+...+-+...+.. ..-.++|+... .++++|+-.- .+....
T Consensus 328 AVt~~~~~~--Y~~L~~~ip~s~vg~Ls~-dSsNiv~LI~~aY~~------i~S~V~l~~~~~p~~l~v~y~s-~C~~~~ 397 (503)
T 3v4v_B 328 AVTSAALPV--YQELSKLIPKSAVGELSE-DSSNVVQLIMDAYNS------LSSTVTLEHSSLPPGVHISYES-QCEGPE 397 (503)
T ss_dssp EECSSSHHH--HHHHHTTSTTCEEEECCT-TSCTHHHHHHHHHHH------HHTCEEEECCCCCTTEEEEBCE-ECSSSC
T ss_pred EEcccchhH--HHHHHHhCCCceeeEccc-cchhHHHHHHHHHHH------hheEEEEecCCCCCceEEEEEE-ecCCCC
Confidence 877665443 33444443 344444333 222222222222222 22344554433 4567665322 121100
Q ss_pred CCCCCccCccccCCCCCceEEeCCCCCceEEEEEEEecC
Q 008566 434 KKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKK 472 (561)
Q Consensus 434 ~~~~~~sd~~~g~~~~~~~~~~~~~~~~s~~~~f~~~~~ 472 (561)
+. .| .....-...++....++.|..+++-.
T Consensus 398 ~~--------~~-~~~~~~~C~~v~ig~~v~F~v~v~~~ 427 (503)
T 3v4v_B 398 KR--------EG-KAEDRGQCNHVRINQTVTFWVSLQAT 427 (503)
T ss_dssp CC--------CC-CCBSSEEECSCCTTCEEEEEEEEEEC
T ss_pred cc--------Cc-ccccCCcccCcccCCEEEEEEEEEee
Confidence 00 00 00011245567777777777777643
No 41
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.84 E-value=8.6 Score=40.06 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=107.5
Q ss_pred CCcEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~-~~~---l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.|-=.+|++|+|.++.. ++. +...|.+.|..+..+.|+||..|-+..- . |-.+.. .+.+
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v----~------P~~~t~-------p~~~ 183 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTV----M------PYISTT-------PAKL 183 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSS----T------TTSCCS-------TTTT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecccc----C------CcccCC-------hHHh
Confidence 46668899999999754 333 4566777777778899999999876311 0 000000 0000
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHHH--H
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS--L 281 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~~--l 281 (561)
. +|-.. ...+.. +..-...+++.+....+.+.+..+.-. .+...|...+-+-+++|.. -
T Consensus 184 ~----------nPC~~-~~~c~~----~f~fr~~l~LT~d~~~F~~~V~~~~is----Gn~D~PEgg~DAl~Qaavc~~~ 244 (454)
T 3vi3_B 184 R----------NPCTS-EQNCTT----PFSYKNVLSLTNKGEVFNELVGKQRIS----GNLDSPEGGFDAIMQVAVCGSL 244 (454)
T ss_dssp T----------CCSCS-SSCCCC----CCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHHH
T ss_pred c----------CCCcC-ccCCCC----CcceeeeeecCCCHHHHHHHHhhcccc----CCCcCCchhHHHHHHHhccccc
Confidence 0 01000 001110 111234678887777777777765432 2223344445444555542 2
Q ss_pred HhccCCCCCcEEEEEecCCC--CCCCcccccCCCCCCccCCCCCCCCCCccchhhH--H--HHHHHHHHHHhcCcEEEEE
Q 008566 282 LGACVPGSGARILAFVGGPS--TEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV--K--FYDALSKQLVHQGHVLDLF 355 (561)
Q Consensus 282 l~~~~~~~ggkIi~F~~g~p--t~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~--~--fY~~la~~~~~~~isvdlf 355 (561)
++ + +. .-|+++|++-.+ -.|.|++..--..+..+-|-+ .. .+..+. + -...|+..+.+++|- =||
T Consensus 245 ig-W-R~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~---~Yt~s~~~DYPSv~ql~~~l~e~nI~-~IF 315 (454)
T 3vi3_B 245 IG-W-RN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN---MYTMSHYYDYPSIAHLVQKLSENNIQ-TIF 315 (454)
T ss_dssp HT-C-CS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT---EECCTTTSCCCCHHHHHHHHHHTTEE-EEE
T ss_pred cC-C-cc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC--CC---cccccccCCCCCHHHHHHHHHhcCCc-EEE
Confidence 22 2 34 778988887655 368888765544444445533 11 111111 1 145788888888884 488
Q ss_pred eecCCccChhcchhhhhccCc
Q 008566 356 ACALDQVGVAELKVAVEKTGG 376 (561)
Q Consensus 356 ~~s~~~~~l~~l~~l~~~TGG 376 (561)
+.+.....+. ..|+.+-.|
T Consensus 316 AVt~~~~~~Y--~~L~~~ip~ 334 (454)
T 3vi3_B 316 AVTEEFQPVY--KELKNLIPK 334 (454)
T ss_dssp EEEGGGHHHH--HHHHHHSTT
T ss_pred EEcCccchHH--HHHHHhCCC
Confidence 8776655442 344444333
No 42
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=88.86 E-value=1.7 Score=48.12 Aligned_cols=209 Identities=13% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCcEEEEEEEcccchhh-HHH---HHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCeeEeecCCccCCHHHH
Q 008566 128 VPPVFMFVVDTCIIEEE-MSF---LKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~-~~~---l~~~l~~~l~~l~~~~~VglItf~~~V~~y~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (561)
.|-=.+|++|+|.++.. ++. +...|.+.|..+.++.|+||..|-+.... ... +.. .+.+
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~-P~~---------~~~-------p~~~ 165 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVL-PFV---------NTH-------PDKL 165 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSST-TSS---------CCS-------STTT
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccC-Ccc---------ccC-------chhc
Confidence 46778999999999754 333 34566667777888999999999874310 000 000 0111
Q ss_pred HHHhccCCCCCCCCCccccCcCCCCCCccccceeeechhhHHHHHHHHHHccCCCCCCCCCCCCCcchhHHHHHHH--HH
Q 008566 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--SL 281 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ll~~L~~~~~~~~~~~~~~~c~G~Al~~A~--~l 281 (561)
+ .|- +..+.+-..+..-...+++.+....+.+.++.+.-. .+...|...+-+.+++|. .-
T Consensus 166 ~----------~Pc----~~~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~is----gn~D~PE~g~dAl~qa~vc~~~ 227 (687)
T 3k6s_B 166 R----------NPC----PNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLIS----GNLDAPEGGLDAMMQVAACPEE 227 (687)
T ss_dssp T----------CCC----CSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCC----CCSSSSCCHHHHHHHHTTCHHH
T ss_pred c----------CCC----CCCCCCcCCcccceeecccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhhcccc
Confidence 0 010 000000000111233567777666777777765432 222334444444444442 33
Q ss_pred HhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCccCCCCCCCCCCccchhhHH--H--HHHHHHHHHhcCcEEEEE
Q 008566 282 LGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLDLF 355 (561)
Q Consensus 282 l~~~~~~~ggkIi~F~~g~pt--~G~G~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~--f--Y~~la~~~~~~~isvdlf 355 (561)
++ +. . .-|+|||++-.+- -|.|+|...-..+..+-|-+ .. .+..+.. | -..|+.++.+++|. =||
T Consensus 228 ig-Wr-~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~~---~y~~s~~~DyPS~~ql~~~l~~~~I~-~if 298 (687)
T 3k6s_B 228 IG-WR-N-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--DN---LYKRSNEFDYPSVGQLAHKLAENNIQ-PIF 298 (687)
T ss_dssp HC-CC-S-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--SS---BCSSGGGSCCCCGGGHHHHHHHTTCB-CCE
T ss_pred cC-Cc-c-ceEEEEEECCCccccCCCccccceecCCCCccccC--CC---ccccccccCCCCHHHHHHHHHHcCCe-EEE
Confidence 33 33 4 7788888876553 47776644433333333431 11 1111111 1 23567777788884 366
Q ss_pred eecCCccChhcchhhhh-ccCcEEEEcC
Q 008566 356 ACALDQVGVAELKVAVE-KTGGLVVLSD 382 (561)
Q Consensus 356 ~~s~~~~~l~~l~~l~~-~TGG~v~~y~ 382 (561)
+......++ ...|+. .+|+.+-...
T Consensus 299 avt~~~~~~--y~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 299 AVTSRMVKT--YEKLTEIIPKSAVGELS 324 (687)
T ss_dssp EECGGGHHH--HHHHHHHSSSCCEEECC
T ss_pred EEeccchhh--HHHHHhhcCCceeeeec
Confidence 665544433 334443 3455555544
No 43
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=87.05 E-value=6.4 Score=36.82 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=32.0
Q ss_pred CcEEEEEEEcccchhh-HHHHH---HHHHHHhhcCCCCceEEEEEECCe
Q 008566 129 PPVFMFVVDTCIIEEE-MSFLK---SALSQAIDLLPDNSLVGLITFGTL 173 (561)
Q Consensus 129 ~p~~vFvID~s~~~~~-~~~l~---~~l~~~l~~l~~~~~VglItf~~~ 173 (561)
|-=++|++|+|.++.. ++.++ ..|.+.|+.+.++.|+||..|-+.
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 3447999999999854 44444 444455555677899999998765
No 44
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=79.95 E-value=4.2 Score=43.75 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=28.9
Q ss_pred CCcEEEEEEEcccchhh--------HHHHHHHHHHHhhcCCCCceEEEEEECCeE
Q 008566 128 VPPVFMFVVDTCIIEEE--------MSFLKSALSQAIDLLPDNSLVGLITFGTLV 174 (561)
Q Consensus 128 ~~p~~vFvID~s~~~~~--------~~~l~~~l~~~l~~l~~~~~VglItf~~~V 174 (561)
..-.++++||+|.++.. ...+..+..-++-.+..+.+||||+|++.+
T Consensus 361 ~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~ 415 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQF 415 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSE
T ss_pred CCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcc
Confidence 36778899999998743 112222222223333456699999999754
No 45
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=77.95 E-value=0.46 Score=34.50 Aligned_cols=28 Identities=18% Similarity=0.606 Sum_probs=20.8
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 88 (561)
..--|.+|+.++.. ....-+|.|++|.+
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 35668999998875 33456899999964
No 46
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=77.66 E-value=0.53 Score=36.07 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=17.3
Q ss_pred CceeEeCCCCCCCCCCccCc
Q 008566 78 AKIWICPFCFQRNHFPPHYA 97 (561)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (561)
.-.|+|++|...|.++.+|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 34799999999999998874
No 47
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=74.67 E-value=10 Score=36.13 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHhcCcEEEEEeecC-C---ccChhcchhhhhccCcEEEEcCC
Q 008566 340 ALSKQLVHQGHVLDLFACAL-D---QVGVAELKVAVEKTGGLVVLSDS 383 (561)
Q Consensus 340 ~la~~~~~~~isvdlf~~s~-~---~~~l~~l~~l~~~TGG~v~~y~~ 383 (561)
+.|+.+.+.||.|+.+.+.. + .-|..+|..++..|||.-++...
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 56778889999999988843 2 34578899999999999998743
No 48
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=74.03 E-value=0.96 Score=37.18 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCCCccCc
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYA 97 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y~ 97 (561)
-|++|.+|+--+ .+.-++.-.|+.|+..|-.++.|.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 479999999664 233355688999999998876653
No 49
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=71.95 E-value=1.7 Score=33.21 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p 93 (561)
-++||. |+.+ .-.+.+.+.-.|+ ||+.-.+.
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 368999 9998 3455667777899 99887664
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=69.03 E-value=3.1 Score=32.76 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=22.7
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 92 (561)
...|..|++- ..++...+.|.|..|++...-
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEEEC
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEecC
Confidence 3679999983 234555679999999987543
No 51
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.87 E-value=6.7 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=22.8
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N 90 (561)
...|..|++ .-..++...+.++|..||..-
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCcc
Confidence 367999998 234567777789999999843
No 52
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=60.92 E-value=2.9 Score=31.37 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.6
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 88 (561)
.+..|.+|++--.|..+-.+.|. ..||.||.
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 46889999999999999998886 99999984
No 53
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=52.76 E-value=3.1 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.1
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 88 (561)
|..|.+|++--.|..+-.+.|. -.||.||-
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4579999999999998887775 88999984
No 54
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=50.78 E-value=9.4 Score=22.23 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=21.3
Q ss_pred ccCCCCceecCceEEEcCCceeEeCCC
Q 008566 60 RCRTCRSILNPFSIVDFAAKIWICPFC 86 (561)
Q Consensus 60 RC~~C~ayiNp~~~~~~~~~~w~C~~C 86 (561)
.|-.|--|-|-||.- .-|+.|-|.-|
T Consensus 2 ~cvscv~fgngfcgd-ncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGD-NCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEEC-SSSCEEECSCC
T ss_pred cceEeEeecCccccC-CcCCcccccCC
Confidence 388899999999964 56779999877
No 55
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=41.78 E-value=3.9 Score=28.35 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.0
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
...|.+|++--.|..+-.+.|. ..||.||-.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 4679999999999998888775 899999853
No 56
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.26 E-value=15 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=18.5
Q ss_pred CcccCCCCc--eecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRS--ILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~a--yiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
--.|.+|++ ++-+ ...+|.|.-||..
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 466999998 4332 2468999999853
No 57
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.21 E-value=9.4 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p 93 (561)
..-.|.+|++- ..-+.|.|.=||+.|--|
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 45669999986 224579999999885433
No 58
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=39.59 E-value=9.8 Score=32.10 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=25.8
Q ss_pred cccCCCCceecCc----eEEEcCC---ceeEeCCCCCCCCCC
Q 008566 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (561)
Q Consensus 59 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (561)
.-|++|++++=|- +.+..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 4699999998876 3333332 467899999988765
No 59
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.03 E-value=10 Score=29.13 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=20.5
Q ss_pred cccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
..|..|.-=+..-|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4466666666666666554568999999653
No 60
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=37.74 E-value=7.2 Score=26.99 Aligned_cols=8 Identities=50% Similarity=1.543 Sum_probs=5.0
Q ss_pred eEeCCCCC
Q 008566 81 WICPFCFQ 88 (561)
Q Consensus 81 w~C~~C~~ 88 (561)
|+|+.|+.
T Consensus 31 w~CP~Cg~ 38 (46)
T 6rxn_A 31 WCCPVCGV 38 (46)
T ss_dssp CBCTTTCC
T ss_pred CcCcCCCC
Confidence 66666664
No 61
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=35.94 E-value=7.2 Score=30.92 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=6.2
Q ss_pred eeEeCCCCC
Q 008566 80 IWICPFCFQ 88 (561)
Q Consensus 80 ~w~C~~C~~ 88 (561)
.|+|+.|+.
T Consensus 68 dW~CPvCga 76 (87)
T 1s24_A 68 DWCCPDCGA 76 (87)
T ss_dssp TCCCSSSCC
T ss_pred CCCCCCCCC
Confidence 477777774
No 62
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=35.89 E-value=9.8 Score=34.84 Aligned_cols=28 Identities=14% Similarity=0.469 Sum_probs=19.4
Q ss_pred CCcccCCCCc-eecCceEEEcCCceeEeCCCC
Q 008566 57 APLRCRTCRS-ILNPFSIVDFAAKIWICPFCF 87 (561)
Q Consensus 57 ~~~RC~~C~a-yiNp~~~~~~~~~~w~C~~C~ 87 (561)
...+|.+|++ |+...-. ....++|+||.
T Consensus 133 ~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQ---PVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSC---CSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCC---CCCCCcCCCCC
Confidence 4689999986 4544332 34679999999
No 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.45 E-value=12 Score=34.54 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=17.5
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
.-+|..|+-.... .--|+|+.|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4689999855432 234999999964
No 64
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=34.24 E-value=22 Score=30.07 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.8
Q ss_pred cccCCCCceecCc----eEEEcCC---ceeEeCCCCCCCCCC
Q 008566 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (561)
Q Consensus 59 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (561)
.-|++|++++=|- +.+..++ -.++|..||+.-.+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 4699999998876 3333332 467899999888776
No 65
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=33.97 E-value=8.1 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.0
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQ 88 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 88 (561)
+..|.+|++---|..+-++.| .+.||.|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 367999999999999998777 699999984
No 66
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=32.74 E-value=13 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=11.0
Q ss_pred ceeEeCCCCCCCC
Q 008566 79 KIWICPFCFQRNH 91 (561)
Q Consensus 79 ~~w~C~~C~~~N~ 91 (561)
+-|.|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 4699999999884
No 67
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.05 E-value=9.4 Score=33.70 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=19.4
Q ss_pred cccCCCCceecCceEE-EcCCceeEeCCCCCCCC
Q 008566 59 LRCRTCRSILNPFSIV-DFAAKIWICPFCFQRNH 91 (561)
Q Consensus 59 ~RC~~C~ayiNp~~~~-~~~~~~w~C~~C~~~N~ 91 (561)
..|..|+-.+.--|.. ......|.|.+|...-.
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 3455555555444442 23456899999986543
No 68
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.73 E-value=16 Score=30.50 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=18.5
Q ss_pred CcccCCCCceecCceEEEcCCcee-EeCCCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIW-ICPFCFQRNH 91 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w-~C~~C~~~N~ 91 (561)
-.||.+|+..... ..... .|+-|++.+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 3778888876554 23346 7888887753
No 69
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.13 E-value=16 Score=29.68 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.6
Q ss_pred cccCCCCceecCceEEE------cCCceeEeCCCCCCCCCCccCcC
Q 008566 59 LRCRTCRSILNPFSIVD------FAAKIWICPFCFQRNHFPPHYAS 98 (561)
Q Consensus 59 ~RC~~C~ayiNp~~~~~------~~~~~w~C~~C~~~N~~p~~y~~ 98 (561)
-||.-|-+|+.|...+. .+...-.|-+||....+.+.|++
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC 75 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYC 75 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEEC
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceeh
Confidence 68999999999965443 35556789999988888888875
No 70
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.77 E-value=11 Score=26.81 Aligned_cols=8 Identities=50% Similarity=1.850 Sum_probs=4.0
Q ss_pred eEeCCCCC
Q 008566 81 WICPFCFQ 88 (561)
Q Consensus 81 w~C~~C~~ 88 (561)
|+|+.|+.
T Consensus 36 w~CP~Cg~ 43 (52)
T 1yk4_A 36 WVCPLCGA 43 (52)
T ss_dssp CBCTTTCC
T ss_pred CcCCCCCC
Confidence 55555553
No 71
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.26 E-value=17 Score=31.27 Aligned_cols=33 Identities=18% Similarity=0.685 Sum_probs=19.9
Q ss_pred cccCCCCceecCceEEEc----CCceeEeCCCCCCCC
Q 008566 59 LRCRTCRSILNPFSIVDF----AAKIWICPFCFQRNH 91 (561)
Q Consensus 59 ~RC~~C~ayiNp~~~~~~----~~~~w~C~~C~~~N~ 91 (561)
..|..|+-.+..-|.... ....|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 345555555555554432 235899999997643
No 72
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=29.24 E-value=17 Score=32.48 Aligned_cols=34 Identities=9% Similarity=0.000 Sum_probs=27.0
Q ss_pred cccCCCC-----ceecCceEEEcC------CceeEeCCCCCCCCC
Q 008566 59 LRCRTCR-----SILNPFSIVDFA------AKIWICPFCFQRNHF 92 (561)
Q Consensus 59 ~RC~~C~-----ayiNp~~~~~~~------~~~w~C~~C~~~N~~ 92 (561)
+.|.+|+ -|+|++-+.+.. +-.|+|-+|++.+.+
T Consensus 38 vkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 38 IRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 7899998 478888777632 357999999998875
No 73
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.05 E-value=33 Score=24.22 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=7.1
Q ss_pred eeEeCCCCCCC
Q 008566 80 IWICPFCFQRN 90 (561)
Q Consensus 80 ~w~C~~C~~~N 90 (561)
+|+|..||..-
T Consensus 3 ~y~C~~CGyvY 13 (52)
T 1e8j_A 3 IYVCTVCGYEY 13 (52)
T ss_dssp CEECSSSCCCC
T ss_pred cEEeCCCCeEE
Confidence 57777777554
No 74
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=27.21 E-value=17 Score=23.10 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=11.1
Q ss_pred eeEeCCCCCCCCC
Q 008566 80 IWICPFCFQRNHF 92 (561)
Q Consensus 80 ~w~C~~C~~~N~~ 92 (561)
-|+|+-|+..|--
T Consensus 6 DW~C~~C~~~Nfa 18 (33)
T 2k1p_A 6 DWQCKTCSNVNWA 18 (33)
T ss_dssp SCBCSSSCCBCCT
T ss_pred CcccCCCCCcccc
Confidence 5999999999853
No 75
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.76 E-value=63 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCcccCCCCceecCceEEEcCCcee-----EeCCCCCC
Q 008566 56 YAPLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (561)
Q Consensus 56 ~~~~RC~~C~ayiNp~~~~~~~~~~w-----~C~~C~~~ 89 (561)
....+|..|+-.|-+--.+...++.| +|.-|+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 51 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI 51 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCC
Confidence 35688999999886322234445566 89888754
No 76
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=26.53 E-value=19 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=26.5
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p 93 (561)
...|..|+..|-|--.-......|.|.-|+......
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 467999999997654211445689999999877654
No 77
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.62 E-value=37 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=21.4
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
...|..|+.-- ..+|...+.++|.-||..
T Consensus 11 ~~~Cp~C~~~~---lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDAI---LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSSC---CEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCCc---eeEeCCCCeEEeCCCCCE
Confidence 35799998732 445666668999999975
No 78
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.07 E-value=15 Score=39.39 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=0.0
Q ss_pred CceeEeCCCCCCCCCCccCc
Q 008566 78 AKIWICPFCFQRNHFPPHYA 97 (561)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (561)
...|+|.+|+..|++|.++.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 45799999999999998775
No 79
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.89 E-value=16 Score=26.11 Aligned_cols=8 Identities=50% Similarity=1.796 Sum_probs=3.9
Q ss_pred eEeCCCCC
Q 008566 81 WICPFCFQ 88 (561)
Q Consensus 81 w~C~~C~~ 88 (561)
|+|+.|+.
T Consensus 37 w~CP~Cg~ 44 (54)
T 4rxn_A 37 WVCPLCGV 44 (54)
T ss_dssp CBCTTTCC
T ss_pred CcCcCCCC
Confidence 55555543
No 80
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.85 E-value=14 Score=26.58 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=5.0
Q ss_pred eeEeCCCCCC
Q 008566 80 IWICPFCFQR 89 (561)
Q Consensus 80 ~w~C~~C~~~ 89 (561)
+|+|..||..
T Consensus 3 ~y~C~~CGyv 12 (55)
T 2v3b_B 3 KWQCVVCGFI 12 (55)
T ss_dssp EEEETTTCCE
T ss_pred cEEeCCCCeE
Confidence 3555555543
No 81
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=24.75 E-value=7.5 Score=28.86 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.0
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
...|.+|++--.|..+-.+.|. -.||.||-.
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~ 37 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLY 37 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC-chhhHHHHH
Confidence 4679999999999998888776 789999843
No 82
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.46 E-value=17 Score=27.50 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=5.1
Q ss_pred eeEeCCCCC
Q 008566 80 IWICPFCFQ 88 (561)
Q Consensus 80 ~w~C~~C~~ 88 (561)
.|+|+.|+.
T Consensus 40 dw~CP~Cga 48 (70)
T 1dx8_A 40 SFMCPACRS 48 (70)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 366666654
No 83
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=24.37 E-value=1.6e+02 Score=24.69 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHhhcCCC---CceEEEEEECCeEE
Q 008566 140 IIEEEMSFLKSALSQAIDLLPD---NSLVGLITFGTLVQ 175 (561)
Q Consensus 140 ~~~~~~~~l~~~l~~~l~~l~~---~~~VglItf~~~V~ 175 (561)
+..+--+.+++||+.-+..-|. +.+|.+++|++.|-
T Consensus 107 qt~~fAe~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 107 QTHIFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred ehhHHHHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 3344445688888887765553 68999999998663
No 84
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.09 E-value=18 Score=28.51 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.9
Q ss_pred ceeEeCCCCCCCCCC
Q 008566 79 KIWICPFCFQRNHFP 93 (561)
Q Consensus 79 ~~w~C~~C~~~N~~p 93 (561)
..|.|+||++.+.+.
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 579999999999764
No 85
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.78 E-value=14 Score=28.78 Aligned_cols=8 Identities=50% Similarity=1.377 Sum_probs=4.3
Q ss_pred eEeCCCCC
Q 008566 81 WICPFCFQ 88 (561)
Q Consensus 81 w~C~~C~~ 88 (561)
|+|+.|+.
T Consensus 61 W~CPvCga 68 (81)
T 2kn9_A 61 WSCPDCGA 68 (81)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 55555553
No 86
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=22.64 E-value=30 Score=33.68 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEEC
Q 008566 144 EMSFLKSALSQAIDLLPDNSLVGLITFG 171 (561)
Q Consensus 144 ~~~~l~~~l~~~l~~l~~~~~VglItf~ 171 (561)
|++.|.++|.++++.|.++.|+++|||-
T Consensus 208 EL~~L~~~L~~a~~~L~~gGrl~visfH 235 (285)
T 1wg8_A 208 ELNALKEFLEQAAEVLAPGGRLVVIAFH 235 (285)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4677899999999999999999999775
No 87
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=22.44 E-value=19 Score=25.96 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=23.4
Q ss_pred CcccCCCCceecCceEEE------cCCceeEeCCCCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVD------FAAKIWICPFCFQRNHF 92 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~------~~~~~w~C~~C~~~N~~ 92 (561)
|..|..|+--..--..+. .+.+.|.|..|+.....
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 567888876655444333 35678999999976543
No 88
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.07 E-value=22 Score=24.50 Aligned_cols=8 Identities=38% Similarity=0.990 Sum_probs=4.3
Q ss_pred eEeCCCCC
Q 008566 81 WICPFCFQ 88 (561)
Q Consensus 81 w~C~~C~~ 88 (561)
-+|+.||.
T Consensus 24 IrCpyCGy 31 (48)
T 4ayb_P 24 VRCPYCGY 31 (48)
T ss_dssp SCCTTTCC
T ss_pred cccCccCc
Confidence 45555553
No 89
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.92 E-value=83 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCcccCCCCceecCceEEEcCCcee-----EeCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w-----~C~~C~~~ 89 (561)
...+|..|+-.|-.-..+...++.| +|.-|+..
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 3589999999887654455566666 78888854
No 90
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=21.80 E-value=31 Score=34.59 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEEC
Q 008566 144 EMSFLKSALSQAIDLLPDNSLVGLITFG 171 (561)
Q Consensus 144 ~~~~l~~~l~~~l~~l~~~~~VglItf~ 171 (561)
|++.|.++|.++++.|.++.|+++|||-
T Consensus 249 EL~~L~~~L~~a~~~L~~gGRl~VISFH 276 (347)
T 3tka_A 249 ELEEIEQALKSSLNVLAPGGRLSIISFH 276 (347)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4677899999999999999999999775
No 91
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.74 E-value=44 Score=28.34 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=20.6
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N 90 (561)
..+.|.+|.+- |. . ++|..|+|+-|++.-
T Consensus 26 ~lP~CP~C~se---yt-Y-eDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSE---YT-Y-EDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCC---CC-E-ECSSSEEETTTTEEE
T ss_pred cCCCCCCCCCc---ce-E-ecCCeEECCcccccc
Confidence 35789999853 33 2 236689999999864
No 92
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.64 E-value=85 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 92 (561)
++..|..|++=+. ++...+.-+|..|+...++
T Consensus 7 ~iL~CP~ck~~L~----~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRLE----FQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBEE----EETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCE----EeCCCCEEEcCCCCceecC
Confidence 4689999999432 4555568999999977654
No 93
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.43 E-value=21 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=20.2
Q ss_pred CcccCCCCceecCce------EEEcCCceeEeCCCCCCCCC
Q 008566 58 PLRCRTCRSILNPFS------IVDFAAKIWICPFCFQRNHF 92 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~------~~~~~~~~w~C~~C~~~N~~ 92 (561)
|..|..|+.-..--. ..-.+.+.|.|..|+.....
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 346777765433222 22234567999999876543
No 94
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.32 E-value=28 Score=24.74 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=23.6
Q ss_pred CCcccCCCCceecCc---eEEEcCCceeEeCCCCCCCC
Q 008566 57 APLRCRTCRSILNPF---SIVDFAAKIWICPFCFQRNH 91 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~---~~~~~~~~~w~C~~C~~~N~ 91 (561)
.|..|..|+.-..-. ..+..+.+.|.|..|+....
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 468899998642211 14455667899999997654
No 95
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=21.30 E-value=31 Score=21.26 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=12.7
Q ss_pred CceeEeCCCCCCCCCC
Q 008566 78 AKIWICPFCFQRNHFP 93 (561)
Q Consensus 78 ~~~w~C~~C~~~N~~p 93 (561)
+..|.|..|-..|.-.
T Consensus 4 ~~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPG 19 (31)
T ss_dssp SCCEECSSSCCEECSS
T ss_pred CccccCCcccccCCCC
Confidence 3579999999999653
No 96
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=20.65 E-value=30 Score=22.23 Aligned_cols=15 Identities=27% Similarity=0.744 Sum_probs=12.8
Q ss_pred ceeEeCCCCCCCCCC
Q 008566 79 KIWICPFCFQRNHFP 93 (561)
Q Consensus 79 ~~w~C~~C~~~N~~p 93 (561)
+.|.|..|...|...
T Consensus 6 G~W~C~~C~v~N~~~ 20 (34)
T 3gj5_B 6 GSWDCEVCLVQNKAD 20 (34)
T ss_dssp CCEECTTTCCEECSS
T ss_pred CceECCeeEeECccc
Confidence 479999999999764
No 97
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.42 E-value=39 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=19.7
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 92 (561)
.+.+|.+|+.|== +-+|+-||.....
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~~ 30 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTVI 30 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCBC
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCCC
Confidence 4678999998843 3469999987765
No 98
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.07 E-value=58 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=19.0
Q ss_pred CcccCCCCceecCceEEEcCCceeEeCCCCCC
Q 008566 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (561)
Q Consensus 58 ~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 89 (561)
--.|.+|++-+ |+. .....|.|.-|+..
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 35699999844 222 22348999999975
No 99
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.05 E-value=94 Score=23.12 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCcccCCCCceecCceEEEcCCceeEeCCCCCCCCC
Q 008566 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (561)
Q Consensus 57 ~~~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 92 (561)
++..|..|++ |. .++...+.-+|..|+...++
T Consensus 9 eiL~CP~ck~---~L-~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKG---PL-RYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCC---cC-eEeCCCCEEEcCCCCccccC
Confidence 5689999999 33 24445567999999976554
Done!