BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008567
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/530 (42%), Positives = 325/530 (61%), Gaps = 22/530 (4%)
Query: 20 ASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLD 79
+S+G++LK G VT++KIDPY+N DAGTM+P+ H +YERF+D
Sbjct: 22 VASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMD 81
Query: 80 VRLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGP 139
V +TK NNIT GK+Y V++KER+G YLG+TVQ++PH+TD IK+ I + I
Sbjct: 82 VNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKI------NN 135
Query: 140 ADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQH 199
A++ ++E+GGTVGDIES+PF+EA+RQL G DN +H++L+ L V GE KTKP QH
Sbjct: 136 AEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQH 195
Query: 200 SVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRN 259
SV+ELR +G+ P + R+ PL + T+ K++ F +V + +I++ +DV + VP++L +
Sbjct: 196 SVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILES 255
Query: 260 QNAHHSILKQLNLLSIAAPPNLQAWTKRAETYD--NLKNSVRIAMVGKYVGLADSYLSVV 317
Q IL +L L +L W N K ++ IA+VGKY L DSY+S+
Sbjct: 256 QKLVSKILSRLKLEDRQV--DLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIK 313
Query: 318 KALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPXXXXXXXX 377
+A+ HA ++P + WI ++DLE ++ L E L N ++V
Sbjct: 314 EAIYHASAYIGVRPKLIWIESTDLESDTKNLN--------EILGNVNGIIVLPGFGSRGA 365
Query: 378 XXMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPE 437
I A KYARE+NIP+LGIC G Q+S++EFAR VLGL ANS E + T +PV+ + E
Sbjct: 366 EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDE 425
Query: 438 GSR-THMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGL 496
T +G TMRLG+++ + + + +LY + V ERHRHRYEVNP+ + +LE+AGL
Sbjct: 426 QKNVTQLGGTMRLGAQKIILK-EGTIAYQLY-GKKVVYERHRHRYEVNPKYVDILEDAGL 483
Query: 497 KFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAA 546
G E G +EI+ELPS+ F+V Q HPEFKSRP PS ++LG I A
Sbjct: 484 VVSGISENG-LVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAV 532
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/533 (45%), Positives = 329/533 (61%), Gaps = 28/533 (5%)
Query: 21 SSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLDV 80
SS+G +L+A G RVT+IKIDPY+N DAGTM P+EH +YERFLD+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPA 140
L++ NN+TTG++Y SV++KER+G+YL +TVQV+PHITD IK I VA +E A
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHS 200
++ V+E+GGTVGDIES+PF+EA+RQ F G N +H++L+P L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQ 260
V LR +G+ P +L RSA+P+ E + K++ F +V G++ + V +++ VPLLL Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 NAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320
++ + L L ++ PNL W + + + +V+IA+ GKYV + D+YLS+++AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPXXXXXXXXXXM 380
HA I + + W+ A L E+A L E R+ +LVP
Sbjct: 324 RHAGIKNRARVEVKWVDAESL--EAADLE--------EAFRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSR 440
+ AA+YARE IPYLGICLG+QI+VIEFAR+V GLK ANS EFD TP+PV+ MPE
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFV 499
+G TMRLG + P + +LY E V ERHRHRYEVNP + LE AGL V
Sbjct: 434 VEGLGGTMRLGDWPMRIK-PGTLLHRLY-GKEEVLERHRHRYEVNPLYVDGLERAGL-VV 490
Query: 500 GKDETGKR------MEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAA 546
G R +E +EL HPF++G+Q HPEFKSRP RPS F+G + AA
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAA 543
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/533 (45%), Positives = 329/533 (61%), Gaps = 28/533 (5%)
Query: 21 SSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLDV 80
SS+G +L+A G RVT+IKIDPY+N DAGTM P+EH +YERFLD+
Sbjct: 32 SSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDM 91
Query: 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPA 140
L++ NN+TTG++Y SV++KER+G+YL +TVQV+PHITD IK I VA +E A
Sbjct: 92 DLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKA 145
Query: 141 DVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHS 200
++ V+E+GGTVGDIES+PF+EA+RQ F G N +H++L+P L E KTKPTQHS
Sbjct: 146 EIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHS 205
Query: 201 VRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQ 260
V LR +G+ P +L RSA+P+ E + K++ F +V G++ + V +++ VPLLL Q
Sbjct: 206 VATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ 265
Query: 261 NAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320
++ + L L ++ PNL W + + + +V+IA+ GKYV + D+YLS+++AL
Sbjct: 266 GLGRAVERALGLEAVI--PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEAL 323
Query: 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPXXXXXXXXXXM 380
HA I + + W+ A L E+A L E R+ +LVP
Sbjct: 324 RHAGIKNRARVEVKWVDAESL--EAADLD--------EAFRDVSGILVPGGFGVRGIEGK 373
Query: 381 ILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSR 440
+ AA+YARE IPYLGICLG+QI+VIEFAR+V GLK ANS EFD TP+PV+ MPE
Sbjct: 374 VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE 433
Query: 441 TH-MGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFV 499
+G TMRLG + P + +LY E V ERHRHRYEVNP + LE AGL V
Sbjct: 434 VEGLGGTMRLGDWPMRIK-PGTLLHRLY-GKEEVLERHRHRYEVNPLYVDGLERAGL-VV 490
Query: 500 GKDETGKR------MEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAA 546
G R +E +EL HPF++G+Q HPEFKSRP RPS F+G + AA
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAA 543
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/529 (40%), Positives = 319/529 (60%), Gaps = 34/529 (6%)
Query: 31 GLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLDVRLTKNNNITT 90
GL VT +K+DPY+N D GTMSP +H +YERF+ ++++ NN TT
Sbjct: 33 GLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTT 92
Query: 91 GKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGT 150
G+IY VL KER+GDYLG TVQV+PHIT+AIK + ++G EG DV ++E+GGT
Sbjct: 93 GRIYSDVLRKERRGDYLGATVQVIPHITNAIKERV-------LEGGEG-HDVVLVEIGGT 144
Query: 151 VGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLT 210
VGDIES+PF+EA+RQ++ +G ++ +H++L+P + GE KTKPTQHSV+EL ++G+
Sbjct: 145 VGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQ 204
Query: 211 PHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQL 270
P +L CRS + + N + K++ FC+VP ++++ DV +I+ +P LL++Q I K+
Sbjct: 205 PDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRF 264
Query: 271 NLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLK 330
+L A NL W + N + V I MVGKY+ L D+Y SV++AL H + +
Sbjct: 265 SLNCPEA--NLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVS 322
Query: 331 PSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPXXXXXXXXXXMILAAKYAREN 390
+I I + D+E E L+ + +LVP MI A++AREN
Sbjct: 323 VNIKLIDSQDVETRGV-----------EILKGLDAILVPGGFGYRGVEGMITTARFAREN 371
Query: 391 NIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPE-----------GS 439
NIPYLGICLGMQ+++I++AR V ++ ANS EF + PVV + E
Sbjct: 372 NIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSE 431
Query: 440 RTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFV 499
++ +G TMRLG+++ D + +LY NA + ERHRHRYEVN + +E+AGL+
Sbjct: 432 KSDLGGTMRLGAQQCQL-VDDSLVRQLY-NAPTIVERHRHRYEVNNMLLKQIEDAGLRVA 489
Query: 500 GKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATK 548
G+ + +EI+E+P+HP++V QFHPEF S P LF G + AA++
Sbjct: 490 GRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASE 538
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 318 bits (815), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 159/272 (58%), Positives = 186/272 (68%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSVG +LK+CGL VTSIKIDPY+N DAGT SP+EH
Sbjct: 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFV 82
Query: 61 XXXXXXXXXXXXNYERFLDVRLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDA 120
NYERFLD+RLTK+NN+TTGKIYQ V+ KERKGDYLGKTVQVVPHITDA
Sbjct: 83 LDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDA 142
Query: 121 IKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHV 180
I+ W+ A+IPVD VCVIELGGTVGDIESMPFIEA RQ F V +NFC IHV
Sbjct: 143 IQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHV 202
Query: 181 SLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240
SL+P GEQKTKPTQ+SVRELR LGL+P L+ CR + PL + KEK+S FCHV
Sbjct: 203 SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQ 262
Query: 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNL 272
++ +HDV +I+ VPLLL Q L++L+L
Sbjct: 263 VICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL 294
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 184/272 (67%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASS+G +LK+CGLRVT+IKIDPY+N DAGT SP+EH
Sbjct: 1 MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFLDVRLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDA 120
NYERFLD+ L K+NNITTGKIYQ V+ KER+GDYLGKTVQVVPHITDA
Sbjct: 61 LNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDA 120
Query: 121 IKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHV 180
++ W+ + A +PVDG + +CVIELGGT+GDIE MPF+EA RQ F +NFC IHV
Sbjct: 121 VQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHV 180
Query: 181 SLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240
SL+P L GEQKTKPTQ+SVR LR LGL+P L+ CRS+ P+ KEK+S FCHV
Sbjct: 181 SLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQ 240
Query: 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNL 272
++ IHDV + + VP+LL Q+ ++L+L
Sbjct: 241 VICIHDVSSTYRVPVLLEEQSIVKYFKERLHL 272
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 171/262 (65%), Gaps = 3/262 (1%)
Query: 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET 359
IA+VGKY L D Y SV KAL H+ +A + K ++ +I + DLE + P AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LRNAECVLVPXXXXXXXXXXMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRAN 419
L A+ +LVP + A +AR IP+LG+CLGMQ++VIEFAR+ L LK A+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDAD 147
Query: 420 SNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRH 479
S EF P P+VI MPE + ++G TMRLG RRT+F+T + + KLY + +++ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALF 539
R+EVNP I E+ L FVG+D G RMEI+EL +HP++VGVQFHPEF SRP +PS +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 540 LGLILAATKQLEAYLNTHQNGC 561
LGL+LAAT L AYL Q GC
Sbjct: 268 LGLLLAATGNLNAYL---QQGC 286
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/262 (48%), Positives = 170/262 (64%), Gaps = 3/262 (1%)
Query: 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET 359
IA+VGKY L D Y SV KAL H+ +A + K ++ +I + DLE + P AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 360 LRNAECVLVPXXXXXXXXXXMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRAN 419
L A+ +LVP + A +AR IP+LG+ LGMQ++VIEFAR+ L LK A+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDAD 147
Query: 420 SNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRH 479
S EF P P+VI MPE + ++G TMRLG RRT+F+T + + KLY + +++ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALF 539
R+EVNP I E+ L FVG+D G RMEI+EL +HP++VGVQFHPEF SRP +PS +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 540 LGLILAATKQLEAYLNTHQNGC 561
LGL+LAAT L AYL Q GC
Sbjct: 268 LGLLLAATGNLNAYL---QQGC 286
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 297 SVRIAMVGKYVGLA-DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAA 355
+VRIA VGKY+ A D+Y SV++ H IA ++ I ++ + +LE +A
Sbjct: 8 TVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNAD-------E 60
Query: 356 AWETLRNAECVLVPXXXXXXXXXXMILAAKYARENNIPYLGICLGMQISVIEFARSVLGL 415
A + L + + VP AA+ AR NNIPY G+ LGMQ++VIE +R+V+G
Sbjct: 61 ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGW 120
Query: 416 KRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDE 475
ANS EF+ E+ + VV M + R MG+ M LG+ + +K+Y + V E
Sbjct: 121 SDANSEEFNKESTHQVVRIM-DCDRNKMGANMHLGACDVYIVEKSSIMAKIYSKSNIVVE 179
Query: 476 RHRHRYEVNPEAIGVLEEAGLKFVGKDE----TGKRMEILELPSHPFYVGVQFHPEFKSR 531
RHRHRYEVN L +AGL + + R+E +E PS F++ VQFHPEF S
Sbjct: 180 RHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFIST 239
Query: 532 PGRPSALFLGLILAATKQ 549
P P+ +L + AA K+
Sbjct: 240 PMDPAPTYLSFMAAAAKK 257
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 384 AKYARENNIPYLGICLGMQISVIEFARSVLGLKR 417
KY ++N P LGIC+G Q + F SV+ K
Sbjct: 78 GKYIDDHNYPILGICVGAQFIALHFGASVVKAKH 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,547,050
Number of Sequences: 62578
Number of extensions: 621683
Number of successful extensions: 1340
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 10
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)