Query 008567
Match_columns 561
No_of_seqs 352 out of 3308
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 13:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0504 PyrG CTP synthase (UTP 100.0 2E-194 5E-199 1511.2 44.9 529 1-551 1-531 (533)
2 PLN02327 CTP synthase 100.0 2E-191 5E-196 1533.0 48.8 555 1-556 1-556 (557)
3 KOG2387 CTP synthase (UTP-ammo 100.0 1E-191 3E-196 1461.7 40.3 556 1-556 1-557 (585)
4 PRK05380 pyrG CTP synthetase; 100.0 6E-182 1E-186 1458.6 47.9 528 1-550 2-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 3E-180 7E-185 1445.1 47.6 524 1-545 1-525 (525)
6 PF06418 CTP_synth_N: CTP synt 100.0 4E-130 8E-135 966.1 16.2 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 1E-121 2E-126 900.4 22.3 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 5.4E-59 1.2E-63 459.3 21.6 227 298-548 2-228 (229)
9 COG0505 CarA Carbamoylphosphat 100.0 1.3E-46 2.9E-51 384.4 15.7 278 203-550 68-366 (368)
10 cd01746 GATase1_CTP_Synthase T 100.0 1.3E-43 2.8E-48 354.3 20.9 233 298-543 1-235 (235)
11 TIGR01368 CPSaseIIsmall carbam 100.0 3.6E-41 7.8E-46 354.2 18.1 275 203-547 65-357 (358)
12 PRK12564 carbamoyl phosphate s 100.0 3E-41 6.6E-46 355.2 17.4 273 203-545 69-359 (360)
13 PRK12838 carbamoyl phosphate s 100.0 9.8E-40 2.1E-44 342.8 18.4 273 203-548 67-352 (354)
14 CHL00197 carA carbamoyl-phosph 100.0 8.6E-39 1.9E-43 337.9 17.5 275 202-549 70-377 (382)
15 PLN02771 carbamoyl-phosphate s 100.0 1.4E-38 3.1E-43 337.1 15.1 266 203-539 121-415 (415)
16 KOG0370 Multifunctional pyrimi 100.0 1.4E-33 3E-38 310.8 15.6 274 199-551 71-357 (1435)
17 COG1492 CobQ Cobyric acid synt 100.0 1.4E-32 3.1E-37 293.5 8.8 302 1-406 1-340 (486)
18 COG0118 HisH Glutamine amidotr 100.0 1.4E-27 2.9E-32 229.0 15.7 189 298-546 2-203 (204)
19 COG2071 Predicted glutamine am 99.9 8.2E-27 1.8E-31 229.0 18.0 192 315-549 30-241 (243)
20 cd01744 GATase1_CPSase Small c 99.9 3.6E-26 7.8E-31 219.5 18.9 176 300-543 1-178 (178)
21 PRK08007 para-aminobenzoate sy 99.9 3.7E-26 8.1E-31 221.2 19.1 182 300-544 2-186 (187)
22 PLN02335 anthranilate synthase 99.9 1.3E-25 2.7E-30 223.2 19.1 196 295-549 16-216 (222)
23 PRK05670 anthranilate synthase 99.9 1.9E-25 4.2E-30 216.3 18.9 186 300-546 2-188 (189)
24 PF00117 GATase: Glutamine ami 99.9 7.8E-26 1.7E-30 218.4 15.1 190 302-545 2-192 (192)
25 COG0512 PabA Anthranilate/para 99.9 4.4E-25 9.4E-30 210.7 19.7 188 298-545 2-190 (191)
26 TIGR00566 trpG_papA glutamine 99.9 3.9E-25 8.4E-30 214.3 19.4 183 300-544 2-187 (188)
27 CHL00101 trpG anthranilate syn 99.9 5.8E-25 1.3E-29 213.3 18.6 185 300-545 2-188 (190)
28 PRK07649 para-aminobenzoate/an 99.9 9.5E-25 2.1E-29 212.8 19.3 187 300-549 2-191 (195)
29 PRK06895 putative anthranilate 99.9 1.3E-24 2.7E-29 210.9 20.1 186 298-545 2-188 (190)
30 PRK11366 puuD gamma-glutamyl-g 99.9 1.6E-24 3.5E-29 219.3 21.3 217 297-550 7-248 (254)
31 TIGR00888 guaA_Nterm GMP synth 99.9 1.2E-24 2.5E-29 210.5 18.0 182 300-546 1-184 (188)
32 cd01743 GATase1_Anthranilate_S 99.9 2.8E-24 6.1E-29 207.0 19.3 184 300-543 1-184 (184)
33 PRK06774 para-aminobenzoate sy 99.9 4.8E-24 1E-28 206.9 18.8 183 300-544 2-190 (191)
34 PRK07765 para-aminobenzoate sy 99.9 1.3E-23 2.8E-28 207.7 21.0 190 299-546 2-192 (214)
35 PRK08857 para-aminobenzoate sy 99.9 1.7E-23 3.6E-28 203.6 19.8 186 300-545 2-192 (193)
36 PRK00758 GMP synthase subunit 99.9 1.3E-23 2.8E-28 202.5 17.7 180 300-547 2-182 (184)
37 cd01742 GATase1_GMP_Synthase T 99.9 1E-23 2.2E-28 202.2 16.4 181 300-543 1-181 (181)
38 PRK05637 anthranilate synthase 99.9 5.4E-23 1.2E-27 202.4 20.4 200 298-548 2-207 (208)
39 PF07722 Peptidase_C26: Peptid 99.9 1.9E-23 4.2E-28 206.8 13.5 170 314-527 27-217 (217)
40 TIGR01815 TrpE-clade3 anthrani 99.9 7.6E-23 1.6E-27 232.2 19.4 195 295-549 514-711 (717)
41 TIGR01823 PabB-fungal aminodeo 99.9 1.4E-22 3E-27 231.7 21.3 200 296-550 4-208 (742)
42 PRK13566 anthranilate synthase 99.9 1.3E-22 2.9E-27 230.5 20.0 193 295-547 524-719 (720)
43 PLN02347 GMP synthetase 99.9 1.7E-22 3.6E-27 223.2 18.9 185 299-547 12-203 (536)
44 PRK03619 phosphoribosylformylg 99.9 2.8E-22 6E-27 198.8 14.9 195 298-544 1-218 (219)
45 TIGR00313 cobQ cobyric acid sy 99.9 3.4E-22 7.3E-27 219.0 15.0 307 4-407 1-335 (475)
46 PRK14607 bifunctional glutamin 99.9 1.2E-21 2.6E-26 217.5 19.1 195 300-557 2-202 (534)
47 CHL00188 hisH imidazole glycer 99.9 2.3E-21 5E-26 191.0 18.0 192 298-545 2-209 (210)
48 PRK00074 guaA GMP synthase; Re 99.9 1.2E-21 2.5E-26 216.4 17.0 184 298-546 4-189 (511)
49 PRK13170 hisH imidazole glycer 99.9 4.8E-21 1E-25 186.9 18.9 186 298-544 1-195 (196)
50 cd01745 GATase1_2 Subgroup of 99.9 1.8E-21 4E-26 188.7 14.4 149 314-543 22-189 (189)
51 PRK13146 hisH imidazole glycer 99.9 5.4E-21 1.2E-25 188.4 17.7 193 298-545 2-207 (209)
52 PRK14004 hisH imidazole glycer 99.9 1.8E-20 3.9E-25 184.7 17.3 196 300-545 2-209 (210)
53 PRK09522 bifunctional glutamin 99.8 2.6E-20 5.7E-25 205.9 18.0 189 298-548 2-192 (531)
54 PLN02889 oxo-acid-lyase/anthra 99.8 4.4E-20 9.5E-25 212.3 19.9 196 297-550 81-339 (918)
55 PRK13141 hisH imidazole glycer 99.8 7.2E-20 1.6E-24 179.5 17.0 193 299-548 1-204 (205)
56 PRK13142 hisH imidazole glycer 99.8 4.1E-20 8.9E-25 179.3 15.0 178 300-545 2-187 (192)
57 PRK13143 hisH imidazole glycer 99.8 1.8E-19 3.8E-24 176.3 19.3 195 298-547 1-199 (200)
58 PRK13152 hisH imidazole glycer 99.8 1E-19 2.3E-24 178.1 17.5 187 300-544 2-200 (201)
59 PRK13181 hisH imidazole glycer 99.8 8.2E-20 1.8E-24 178.4 16.5 184 300-544 2-198 (199)
60 cd01748 GATase1_IGP_Synthase T 99.8 7.1E-20 1.5E-24 178.5 15.2 186 300-543 1-198 (198)
61 cd01747 GATase1_Glutamyl_Hydro 99.8 8.1E-20 1.8E-24 186.9 15.6 174 314-533 23-219 (273)
62 PLN02832 glutamine amidotransf 99.8 5.2E-19 1.1E-23 177.5 17.6 201 298-548 2-216 (248)
63 PRK09065 glutamine amidotransf 99.8 5.2E-19 1.1E-23 177.5 17.0 132 359-530 51-190 (237)
64 COG0518 GuaA GMP synthase - Gl 99.8 4.6E-19 1E-23 173.0 14.4 182 298-544 2-191 (198)
65 cd01741 GATase1_1 Subgroup of 99.8 1E-18 2.2E-23 168.7 16.6 138 358-543 42-188 (188)
66 PRK13525 glutamine amidotransf 99.8 1.7E-18 3.6E-23 168.2 17.5 182 298-547 2-188 (189)
67 PRK05665 amidotransferase; Pro 99.8 2.5E-18 5.4E-23 172.8 18.9 134 359-532 54-192 (240)
68 PRK13527 glutamine amidotransf 99.8 3.2E-18 7E-23 167.3 17.9 190 299-548 2-199 (200)
69 PLN02617 imidazole glycerol ph 99.8 3.2E-18 7E-23 189.1 19.6 199 296-550 5-214 (538)
70 PRK06490 glutamine amidotransf 99.8 7.9E-18 1.7E-22 169.2 20.6 170 297-529 7-182 (239)
71 TIGR01855 IMP_synth_hisH imida 99.8 2.9E-18 6.3E-23 167.3 15.8 187 300-545 1-196 (196)
72 TIGR01737 FGAM_synth_I phospho 99.8 6.1E-18 1.3E-22 168.7 16.5 192 298-544 1-225 (227)
73 PRK07053 glutamine amidotransf 99.8 1E-17 2.3E-22 167.8 17.6 171 299-531 4-183 (234)
74 PRK07567 glutamine amidotransf 99.8 7.3E-18 1.6E-22 169.7 16.2 132 359-531 48-195 (242)
75 TIGR03800 PLP_synth_Pdx2 pyrid 99.7 4E-17 8.7E-22 157.9 16.6 175 299-543 1-183 (184)
76 PRK00784 cobyric acid synthase 99.7 7.1E-17 1.5E-21 177.9 18.0 307 1-407 2-341 (488)
77 KOG1224 Para-aminobenzoate (PA 99.7 6.9E-17 1.5E-21 171.5 16.6 196 296-548 13-219 (767)
78 KOG0026 Anthranilate synthase, 99.7 6.8E-17 1.5E-21 149.6 14.0 195 299-552 20-220 (223)
79 PRK08250 glutamine amidotransf 99.7 4.3E-16 9.3E-21 156.3 18.5 131 359-531 42-185 (235)
80 PRK01077 cobyrinic acid a,c-di 99.7 8E-15 1.7E-19 160.2 29.3 306 1-408 3-339 (451)
81 cd01749 GATase1_PB Glutamine A 99.7 1.6E-15 3.5E-20 146.4 14.3 171 311-543 8-183 (183)
82 KOG0623 Glutamine amidotransfe 99.6 1.2E-15 2.5E-20 155.2 12.9 195 299-544 3-206 (541)
83 TIGR00379 cobB cobyrinic acid 99.6 2.6E-14 5.7E-19 156.0 22.5 293 4-407 2-337 (449)
84 COG0047 PurL Phosphoribosylfor 99.6 1E-13 2.2E-18 135.7 18.0 196 297-545 2-229 (231)
85 KOG1622 GMP synthase [Nucleoti 99.5 1.3E-14 2.9E-19 152.2 9.1 139 361-543 58-201 (552)
86 PRK01175 phosphoribosylformylg 99.5 2.9E-13 6.2E-18 137.7 17.4 211 297-546 3-257 (261)
87 cd01740 GATase1_FGAR_AT Type 1 99.5 7.1E-13 1.5E-17 133.3 15.3 176 314-532 13-218 (238)
88 PRK13526 glutamine amidotransf 99.4 1.2E-12 2.7E-17 125.5 13.7 81 298-407 3-88 (179)
89 PRK13896 cobyrinic acid a,c-di 99.4 7.5E-12 1.6E-16 135.6 20.8 293 1-407 1-324 (433)
90 PRK05368 homoserine O-succinyl 99.4 6.6E-12 1.4E-16 129.8 16.2 196 296-531 34-241 (302)
91 COG0311 PDX2 Predicted glutami 99.4 1.5E-11 3.2E-16 116.9 14.5 82 298-407 1-88 (194)
92 KOG3179 Predicted glutamine sy 99.4 1.6E-12 3.5E-17 124.5 7.9 136 358-532 55-198 (245)
93 PF01174 SNO: SNO glutamine am 99.3 5.5E-11 1.2E-15 114.0 14.3 74 308-405 3-82 (188)
94 KOG1559 Gamma-glutamyl hydrola 99.3 1.3E-11 2.9E-16 121.0 9.3 180 314-531 80-273 (340)
95 COG1797 CobB Cobyrinic acid a, 99.2 3.3E-09 7.1E-14 113.1 23.8 403 6-546 4-450 (451)
96 PF13507 GATase_5: CobB/CobQ-l 99.2 2.2E-10 4.8E-15 116.4 12.5 196 297-533 1-233 (259)
97 TIGR01857 FGAM-synthase phosph 99.1 5.3E-09 1.1E-13 124.8 19.1 219 296-544 976-1237(1239)
98 PRK05297 phosphoribosylformylg 99.0 1.8E-08 3.9E-13 122.0 18.6 195 296-533 1034-1263(1290)
99 PLN03206 phosphoribosylformylg 98.9 5.5E-08 1.2E-12 117.0 19.4 203 295-533 1035-1276(1307)
100 TIGR01735 FGAM_synt phosphorib 98.7 6.3E-08 1.4E-12 117.2 13.4 194 296-532 1054-1283(1310)
101 KOG3210 Imidazoleglycerol-phos 98.7 3.8E-07 8.1E-12 85.5 14.0 88 298-407 12-107 (226)
102 cd01750 GATase1_CobQ Type 1 gl 98.6 9.2E-08 2E-12 93.3 8.1 83 300-408 1-89 (194)
103 PF00988 CPSase_sm_chain: Carb 98.6 2.6E-09 5.7E-14 97.2 -2.6 64 203-267 67-130 (131)
104 cd03130 GATase1_CobB Type 1 gl 98.5 1.8E-07 3.9E-12 91.6 8.0 73 313-407 13-91 (198)
105 PRK06278 cobyrinic acid a,c-di 98.5 2.8E-07 6.1E-12 101.3 7.8 78 298-407 1-81 (476)
106 PHA03366 FGAM-synthase; Provis 98.4 3.1E-06 6.8E-11 102.8 15.9 93 294-409 1025-1134(1304)
107 TIGR01739 tegu_FGAM_synt herpe 98.4 3.8E-06 8.3E-11 101.6 16.0 92 295-409 927-1035(1202)
108 PRK12374 putative dithiobiotin 98.2 8.1E-06 1.8E-10 81.7 9.2 170 1-218 2-173 (231)
109 PRK00090 bioD dithiobiotin syn 98.0 2.9E-05 6.2E-10 76.8 9.3 189 4-243 2-200 (222)
110 COG0132 BioD Dethiobiotin synt 98.0 7E-05 1.5E-09 74.7 11.4 175 1-230 2-186 (223)
111 PF04204 HTS: Homoserine O-suc 97.9 0.00017 3.7E-09 74.7 13.8 195 296-532 33-241 (298)
112 cd01653 GATase1 Type 1 glutami 97.9 5.7E-05 1.2E-09 63.2 8.6 76 312-404 13-92 (115)
113 PF07685 GATase_3: CobB/CobQ-l 97.8 1.7E-05 3.7E-10 74.9 4.7 51 358-408 3-59 (158)
114 cd03131 GATase1_HTS Type 1 glu 97.8 0.00011 2.3E-09 70.9 9.5 52 360-411 60-118 (175)
115 cd03146 GAT1_Peptidase_E Type 97.8 4.3E-05 9.4E-10 75.6 6.8 93 295-405 29-128 (212)
116 PF13500 AAA_26: AAA domain; P 97.8 9.1E-05 2E-09 72.0 8.5 181 2-240 1-187 (199)
117 cd03144 GATase1_ScBLP_like Typ 97.8 3.3E-05 7.1E-10 69.3 4.7 84 300-404 2-90 (114)
118 cd03128 GAT_1 Type 1 glutamine 97.6 0.00021 4.5E-09 57.1 6.7 75 313-404 14-92 (92)
119 TIGR01001 metA homoserine O-su 97.4 0.0014 3E-08 67.7 11.9 196 296-532 34-241 (300)
120 TIGR00347 bioD dethiobiotin sy 97.3 0.0012 2.6E-08 62.1 9.3 34 5-39 1-34 (166)
121 PRK05632 phosphate acetyltrans 97.2 0.0014 3E-08 75.9 10.3 37 1-38 2-38 (684)
122 PF09825 BPL_N: Biotin-protein 97.2 0.028 6E-07 60.3 19.3 46 360-405 47-96 (367)
123 COG3442 Predicted glutamine am 97.0 0.0082 1.8E-07 59.3 11.3 46 361-406 51-102 (250)
124 TIGR01382 PfpI intracellular p 96.9 0.0053 1.1E-07 57.7 9.1 45 362-406 60-107 (166)
125 PRK11780 isoprenoid biosynthes 96.8 0.0022 4.8E-08 64.0 5.9 49 360-408 83-145 (217)
126 cd03133 GATase1_ES1 Type 1 glu 96.8 0.0023 5E-08 63.6 5.9 55 360-414 80-150 (213)
127 cd02037 MRP-like MRP (Multiple 96.7 0.012 2.6E-07 55.6 9.9 38 4-42 2-39 (169)
128 PRK05282 (alpha)-aspartyl dipe 96.6 0.0058 1.2E-07 61.6 7.7 105 280-407 16-129 (233)
129 cd03109 DTBS Dethiobiotin synt 96.5 0.014 3.1E-07 53.5 9.0 36 4-42 3-38 (134)
130 KOG1907 Phosphoribosylformylgl 96.5 0.042 9.1E-07 63.5 14.1 91 296-406 1057-1162(1320)
131 cd03169 GATase1_PfpI_1 Type 1 96.5 0.0038 8.2E-08 59.8 5.1 47 361-407 75-124 (180)
132 TIGR01968 minD_bact septum sit 96.2 0.052 1.1E-06 54.3 11.6 40 2-42 2-41 (261)
133 cd03132 GATase1_catalase Type 96.0 0.042 9.1E-07 50.4 9.2 102 298-406 2-110 (142)
134 PRK09435 membrane ATPase/prote 95.9 0.045 9.7E-07 58.1 10.3 41 3-45 58-98 (332)
135 TIGR01007 eps_fam capsular exo 95.9 0.052 1.1E-06 52.8 10.0 42 1-43 17-58 (204)
136 TIGR01969 minD_arch cell divis 95.8 0.067 1.5E-06 53.2 10.6 40 2-42 1-40 (251)
137 cd03134 GATase1_PfpI_like A ty 95.8 0.013 2.7E-07 55.1 5.0 46 361-406 61-109 (165)
138 cd03147 GATase1_Ydr533c_like T 95.7 0.016 3.4E-07 58.4 5.6 48 360-407 92-143 (231)
139 PRK14493 putative bifunctional 95.7 0.038 8.2E-07 57.1 8.4 38 1-41 1-38 (274)
140 TIGR03371 cellulose_yhjQ cellu 95.7 0.054 1.2E-06 53.9 9.1 41 1-42 1-41 (246)
141 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.033 7.3E-07 46.0 6.3 33 4-38 2-34 (99)
142 PRK10818 cell division inhibit 95.4 0.14 3E-06 52.0 11.1 41 1-42 2-42 (270)
143 cd03114 ArgK-like The function 95.2 0.15 3.2E-06 47.7 9.9 37 4-42 2-38 (148)
144 PF01656 CbiA: CobQ/CobB/MinD/ 95.2 0.029 6.2E-07 53.4 5.2 39 4-43 1-39 (195)
145 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.1 0.016 3.4E-07 53.8 3.0 47 360-406 35-86 (147)
146 PRK10867 signal recognition pa 95.1 0.25 5.5E-06 54.3 12.5 39 2-42 101-140 (433)
147 TIGR01425 SRP54_euk signal rec 95.0 0.24 5.2E-06 54.3 12.2 40 2-43 101-140 (429)
148 COG0693 ThiJ Putative intracel 95.0 0.028 6E-07 54.1 4.5 47 360-406 64-114 (188)
149 TIGR00750 lao LAO/AO transport 94.9 0.2 4.3E-06 52.2 10.9 43 1-45 34-76 (300)
150 cd00550 ArsA_ATPase Oxyanion-t 94.9 0.14 3E-06 52.2 9.3 39 2-42 1-39 (254)
151 PRK04155 chaperone protein Hch 94.7 0.043 9.3E-07 57.1 5.2 46 360-405 145-194 (287)
152 cd03140 GATase1_PfpI_3 Type 1 94.5 0.061 1.3E-06 51.0 5.4 46 361-406 59-106 (170)
153 PHA02518 ParA-like protein; Pr 94.5 0.14 3.1E-06 49.5 8.0 41 2-43 1-41 (211)
154 cd03137 GATase1_AraC_1 AraC tr 94.4 0.076 1.6E-06 50.8 5.8 48 359-406 61-111 (187)
155 PRK14974 cell division protein 94.4 0.35 7.6E-06 51.4 11.2 39 2-42 141-179 (336)
156 cd03141 GATase1_Hsp31_like Typ 94.3 0.061 1.3E-06 53.6 4.9 48 360-407 88-139 (221)
157 cd03129 GAT1_Peptidase_E_like 94.1 0.18 3.8E-06 49.7 7.8 95 296-406 28-129 (210)
158 cd03148 GATase1_EcHsp31_like T 94.1 0.08 1.7E-06 53.3 5.4 46 360-405 94-143 (232)
159 TIGR00959 ffh signal recogniti 94.0 0.59 1.3E-05 51.4 12.4 38 3-42 101-139 (428)
160 cd03138 GATase1_AraC_2 AraC tr 94.0 0.092 2E-06 50.7 5.5 48 359-406 66-119 (195)
161 PRK13849 putative crown gall t 93.9 0.46 1E-05 47.8 10.6 43 1-44 1-43 (231)
162 PRK13768 GTPase; Provisional 93.9 0.085 1.8E-06 53.7 5.2 39 2-42 3-41 (253)
163 PRK11889 flhF flagellar biosyn 93.8 0.8 1.7E-05 49.9 12.6 40 2-43 242-281 (436)
164 cd03135 GATase1_DJ-1 Type 1 gl 93.8 0.09 2E-06 48.8 4.9 47 361-407 59-109 (163)
165 COG0489 Mrp ATPases involved i 93.6 0.62 1.3E-05 47.9 11.0 158 2-216 58-226 (265)
166 PRK11574 oxidative-stress-resi 93.3 0.15 3.2E-06 49.4 5.6 44 361-404 65-112 (196)
167 TIGR03499 FlhF flagellar biosy 93.0 0.16 3.4E-06 52.6 5.5 40 2-43 195-236 (282)
168 COG1703 ArgK Putative periplas 92.9 0.41 9E-06 49.9 8.2 100 4-149 54-153 (323)
169 TIGR01383 not_thiJ DJ-1 family 92.8 0.16 3.4E-06 48.2 4.9 48 360-407 61-112 (179)
170 PRK05439 pantothenate kinase; 92.6 0.18 4E-06 53.0 5.5 42 3-46 88-131 (311)
171 PRK14494 putative molybdopteri 92.6 0.23 4.9E-06 50.1 5.9 37 1-39 1-37 (229)
172 cd02035 ArsA ArsA ATPase funct 92.6 0.74 1.6E-05 45.5 9.5 39 4-44 2-40 (217)
173 cd02042 ParA ParA and ParB of 92.5 0.35 7.6E-06 41.5 6.2 34 9-42 6-39 (104)
174 PRK06696 uridine kinase; Valid 92.4 0.31 6.8E-06 48.4 6.6 42 3-46 24-65 (223)
175 TIGR00064 ftsY signal recognit 92.4 0.24 5.2E-06 51.1 5.9 39 2-42 73-111 (272)
176 PRK11249 katE hydroperoxidase 92.4 0.51 1.1E-05 55.0 9.1 105 296-406 596-706 (752)
177 cd03136 GATase1_AraC_ArgR_like 92.3 0.25 5.4E-06 47.3 5.6 47 360-406 62-110 (185)
178 cd03116 MobB Molybdenum is an 92.3 0.28 6.1E-06 46.6 5.8 40 1-42 1-40 (159)
179 cd03139 GATase1_PfpI_2 Type 1 92.2 0.19 4.1E-06 47.7 4.6 47 360-406 60-109 (183)
180 PF06564 YhjQ: YhjQ protein; 92.1 0.25 5.3E-06 50.2 5.5 40 1-41 1-40 (243)
181 PRK12726 flagellar biosynthesi 92.1 2.7 5.9E-05 45.6 13.5 39 2-42 207-245 (407)
182 COG1618 Predicted nucleotide k 91.9 0.71 1.5E-05 44.2 7.8 115 3-167 7-127 (179)
183 cd02040 NifH NifH gene encodes 91.9 0.29 6.3E-06 49.4 5.8 43 1-45 1-43 (270)
184 TIGR00176 mobB molybdopterin-g 91.8 0.33 7.2E-06 45.7 5.7 35 4-40 2-36 (155)
185 PF13278 DUF4066: Putative ami 91.8 0.21 4.6E-06 46.9 4.4 49 359-407 58-109 (166)
186 PLN02974 adenosylmethionine-8- 91.7 1.1 2.4E-05 53.2 11.0 37 2-39 28-64 (817)
187 cd02029 PRK_like Phosphoribulo 91.7 0.28 6.1E-06 50.6 5.3 46 4-51 2-47 (277)
188 PRK13232 nifH nitrogenase redu 91.5 0.3 6.5E-06 49.9 5.4 43 1-45 1-43 (273)
189 TIGR03018 pepcterm_TyrKin exop 91.4 0.41 9E-06 46.9 6.1 42 1-43 35-77 (207)
190 cd02036 MinD Bacterial cell di 91.2 0.36 7.7E-06 45.2 5.3 38 4-42 2-39 (179)
191 TIGR03815 CpaE_hom_Actino heli 91.1 0.82 1.8E-05 47.9 8.4 43 1-44 93-135 (322)
192 cd02034 CooC The accessory pro 91.0 0.44 9.4E-06 42.8 5.3 36 4-41 2-37 (116)
193 PF03205 MobB: Molybdopterin g 90.9 0.39 8.4E-06 44.5 5.1 36 2-39 1-36 (140)
194 PRK10751 molybdopterin-guanine 90.8 0.53 1.1E-05 45.4 6.0 36 2-39 7-42 (173)
195 cd03115 SRP The signal recogni 90.7 4 8.6E-05 38.4 12.0 37 4-42 3-39 (173)
196 CHL00175 minD septum-site dete 90.6 0.48 1E-05 48.5 6.0 45 1-46 15-60 (281)
197 PRK06278 cobyrinic acid a,c-di 90.6 0.31 6.8E-06 54.2 4.8 37 1-41 238-274 (476)
198 PRK13230 nitrogenase reductase 90.3 0.51 1.1E-05 48.3 5.8 43 1-45 1-43 (279)
199 CHL00072 chlL photochlorophyll 89.7 0.56 1.2E-05 48.7 5.6 42 1-45 1-42 (290)
200 PF13614 AAA_31: AAA domain; P 89.3 0.78 1.7E-05 42.2 5.7 40 2-42 1-40 (157)
201 cd02033 BchX Chlorophyllide re 89.2 0.63 1.4E-05 49.4 5.6 42 1-44 31-72 (329)
202 PF02374 ArsA_ATPase: Anion-tr 89.2 0.56 1.2E-05 49.2 5.2 41 1-43 1-41 (305)
203 PRK10416 signal recognition pa 89.2 0.68 1.5E-05 48.9 5.8 39 2-42 115-153 (318)
204 PTZ00301 uridine kinase; Provi 89.0 0.78 1.7E-05 45.5 5.8 43 2-46 4-48 (210)
205 COG0003 ArsA Predicted ATPase 88.9 0.73 1.6E-05 48.8 5.7 46 1-48 2-47 (322)
206 PRK09393 ftrA transcriptional 88.8 0.65 1.4E-05 48.6 5.3 49 358-406 71-121 (322)
207 PHA02519 plasmid partition pro 88.7 3.4 7.5E-05 44.8 10.9 42 2-44 107-149 (387)
208 cd03110 Fer4_NifH_child This p 88.5 6.3 0.00014 37.2 11.5 35 4-43 2-36 (179)
209 PRK10037 cell division protein 88.2 0.82 1.8E-05 46.1 5.4 40 1-41 1-40 (250)
210 PRK13233 nifH nitrogenase redu 88.2 0.85 1.8E-05 46.5 5.6 43 1-45 2-45 (275)
211 PRK07667 uridine kinase; Provi 88.1 1 2.2E-05 43.8 5.8 40 3-44 19-58 (193)
212 TIGR03029 EpsG chain length de 88.1 0.96 2.1E-05 46.1 5.9 39 2-41 104-142 (274)
213 PRK11670 antiporter inner memb 88.1 0.96 2.1E-05 48.7 6.1 44 2-46 108-151 (369)
214 PRK14495 putative molybdopteri 87.8 0.95 2.1E-05 49.8 5.9 38 1-40 1-38 (452)
215 TIGR02069 cyanophycinase cyano 87.8 2.4 5.2E-05 43.3 8.5 108 284-405 17-130 (250)
216 PRK12723 flagellar biosynthesi 87.8 7.4 0.00016 42.3 12.7 39 2-42 175-217 (388)
217 PRK13185 chlL protochlorophyll 87.6 1.1 2.3E-05 45.5 6.0 39 2-42 3-41 (270)
218 PRK13705 plasmid-partitioning 87.4 2.9 6.4E-05 45.3 9.4 42 2-44 107-149 (388)
219 PRK12727 flagellar biosynthesi 87.3 3.4 7.3E-05 46.7 9.9 39 2-42 351-391 (559)
220 cd02028 UMPK_like Uridine mono 87.0 1.2 2.7E-05 42.7 5.7 41 4-46 2-42 (179)
221 PRK13236 nitrogenase reductase 86.2 1.3 2.7E-05 46.2 5.6 42 2-45 7-48 (296)
222 PRK14489 putative bifunctional 86.1 1.4 3E-05 47.4 6.0 38 1-40 205-242 (366)
223 PRK13235 nifH nitrogenase redu 86.0 1.3 2.9E-05 45.1 5.6 43 1-45 1-43 (274)
224 PRK05703 flhF flagellar biosyn 86.0 1.1 2.5E-05 49.1 5.3 39 2-42 222-262 (424)
225 PF01583 APS_kinase: Adenylyls 85.5 1.6 3.4E-05 41.5 5.4 36 3-40 4-39 (156)
226 cd02117 NifH_like This family 85.4 1.6 3.4E-05 42.9 5.6 41 3-45 2-42 (212)
227 TIGR01287 nifH nitrogenase iro 85.3 1.5 3.2E-05 44.8 5.5 41 3-45 2-42 (275)
228 KOG2764 Putative transcription 85.3 1.3 2.8E-05 44.5 4.8 44 361-404 66-113 (247)
229 PF00142 Fer4_NifH: 4Fe-4S iro 84.9 1.1 2.3E-05 46.2 4.2 31 12-42 9-39 (273)
230 cd01672 TMPK Thymidine monopho 84.5 1.7 3.6E-05 41.2 5.2 36 2-39 1-36 (200)
231 PRK13231 nitrogenase reductase 84.3 0.97 2.1E-05 45.8 3.6 41 1-44 2-42 (264)
232 PRK15453 phosphoribulokinase; 84.3 1.4 3.1E-05 45.8 4.8 47 3-51 7-53 (290)
233 COG0529 CysC Adenylylsulfate k 84.3 1.8 3.9E-05 42.1 5.1 33 3-37 25-57 (197)
234 PRK13234 nifH nitrogenase redu 84.2 2 4.3E-05 44.7 5.9 43 1-45 4-46 (295)
235 COG1897 MetA Homoserine trans- 83.7 11 0.00024 38.7 10.5 196 296-531 34-241 (307)
236 PRK00771 signal recognition pa 83.7 1.8 3.9E-05 47.7 5.6 39 2-42 96-134 (437)
237 PRK13886 conjugal transfer pro 83.1 2.4 5.2E-05 43.1 5.8 40 2-42 3-42 (241)
238 TIGR02016 BchX chlorophyllide 82.8 2 4.4E-05 44.7 5.4 40 2-43 1-40 (296)
239 COG2403 Predicted GTPase [Gene 82.7 1.5 3.3E-05 47.0 4.3 36 3-39 128-163 (449)
240 cd02032 Bchl_like This family 82.3 2.3 5.1E-05 43.1 5.5 39 4-44 3-41 (267)
241 KOG0780 Signal recognition par 82.2 5.1 0.00011 43.4 8.0 118 3-179 103-221 (483)
242 PF00485 PRK: Phosphoribulokin 81.8 1.9 4.2E-05 41.6 4.5 39 3-43 1-43 (194)
243 COG2894 MinD Septum formation 81.6 2.2 4.8E-05 42.9 4.7 39 1-40 2-40 (272)
244 PRK09841 cryptic autophosphory 81.3 2.4 5.2E-05 49.7 5.8 40 2-42 532-571 (726)
245 PRK11519 tyrosine kinase; Prov 81.2 2.4 5.3E-05 49.6 5.8 40 2-42 527-566 (719)
246 PRK12724 flagellar biosynthesi 81.1 2.5 5.4E-05 46.5 5.4 40 2-43 224-264 (432)
247 COG0540 PyrB Aspartate carbamo 80.7 6.9 0.00015 41.1 8.2 104 192-329 86-189 (316)
248 PRK01911 ppnK inorganic polyph 80.5 3.3 7.2E-05 43.3 5.9 36 361-401 63-98 (292)
249 PRK13869 plasmid-partitioning 80.4 2.7 5.9E-05 45.8 5.5 43 1-44 121-163 (405)
250 TIGR03453 partition_RepA plasm 79.7 3.1 6.8E-05 44.9 5.6 40 2-42 105-144 (387)
251 PRK03846 adenylylsulfate kinas 79.5 3 6.4E-05 40.5 4.9 39 2-42 25-63 (198)
252 cd02038 FleN-like FleN is a me 78.5 4.5 9.7E-05 37.0 5.5 38 4-42 2-39 (139)
253 KOG3022 Predicted ATPase, nucl 78.5 8.1 0.00018 40.1 7.8 121 3-153 49-170 (300)
254 COG1192 Soj ATPases involved i 78.1 3.9 8.5E-05 41.1 5.5 41 1-42 2-43 (259)
255 COG3640 CooC CO dehydrogenase 77.7 2.7 6E-05 42.6 4.1 36 4-41 3-39 (255)
256 PF09140 MipZ: ATPase MipZ; I 77.1 3.6 7.7E-05 42.1 4.8 39 4-42 2-40 (261)
257 cd03145 GAT1_cyanophycinase Ty 77.1 8.1 0.00017 38.4 7.3 97 296-405 28-131 (217)
258 cd02023 UMPK Uridine monophosp 77.0 3.5 7.5E-05 39.8 4.6 37 4-44 2-38 (198)
259 TIGR01281 DPOR_bchL light-inde 76.9 4.1 8.9E-05 41.3 5.3 39 4-44 3-41 (268)
260 PF03308 ArgK: ArgK protein; 76.5 2.9 6.3E-05 43.0 4.0 100 4-149 32-131 (266)
261 PRK00889 adenylylsulfate kinas 76.3 5.2 0.00011 37.8 5.5 37 2-40 5-41 (175)
262 COG1763 MobB Molybdopterin-gua 76.0 7.1 0.00015 37.3 6.2 55 1-57 2-57 (161)
263 cd03111 CpaE_like This protein 75.9 5.8 0.00013 34.6 5.3 39 4-43 2-41 (106)
264 PLN02929 NADH kinase 75.9 4 8.6E-05 42.9 4.8 66 309-401 32-97 (301)
265 COG0300 DltE Short-chain dehyd 75.5 3 6.4E-05 43.0 3.7 33 1-39 6-38 (265)
266 PRK14491 putative bifunctional 75.4 5.2 0.00011 46.0 6.0 39 1-41 10-48 (597)
267 PF03575 Peptidase_S51: Peptid 74.9 3.4 7.4E-05 38.6 3.8 74 314-403 3-81 (154)
268 PRK03372 ppnK inorganic polyph 74.5 6.3 0.00014 41.5 5.9 36 361-401 71-106 (306)
269 PRK07933 thymidylate kinase; V 74.4 5.8 0.00013 39.2 5.5 36 2-39 1-36 (213)
270 PRK04539 ppnK inorganic polyph 74.1 6.4 0.00014 41.2 5.9 93 298-401 6-102 (296)
271 TIGR01005 eps_transp_fam exopo 74.0 4.8 0.0001 47.3 5.5 40 2-42 547-586 (754)
272 PRK05480 uridine/cytidine kina 73.8 6.1 0.00013 38.5 5.4 38 2-43 7-44 (209)
273 TIGR00073 hypB hydrogenase acc 73.6 17 0.00036 35.5 8.4 46 3-51 24-69 (207)
274 PRK02155 ppnK NAD(+)/NADH kina 73.5 7.6 0.00016 40.5 6.3 90 298-401 6-97 (291)
275 PF00448 SRP54: SRP54-type pro 73.4 6.8 0.00015 38.4 5.6 40 2-43 2-41 (196)
276 COG1348 NifH Nitrogenase subun 73.2 3.2 7E-05 42.1 3.2 100 12-169 10-117 (278)
277 COG4285 Uncharacterized conser 72.5 10 0.00022 37.9 6.4 57 332-401 32-92 (253)
278 PLN02727 NAD kinase 72.2 7.5 0.00016 46.4 6.4 96 297-401 678-777 (986)
279 COG1072 CoaA Panthothenate kin 72.1 7.1 0.00015 40.5 5.5 37 3-41 84-122 (283)
280 COG1341 Predicted GTPase or GT 71.8 5.8 0.00013 43.1 5.0 48 3-52 75-124 (398)
281 PRK08727 hypothetical protein; 71.2 3 6.6E-05 41.7 2.6 59 3-63 43-101 (233)
282 COG0857 Pta BioD-like N-termin 70.5 6.7 0.00014 42.1 5.1 38 1-39 2-39 (354)
283 COG3340 PepE Peptidase E [Amin 69.7 13 0.00028 37.2 6.5 91 297-404 32-131 (224)
284 PRK02649 ppnK inorganic polyph 69.7 10 0.00022 39.9 6.2 36 361-401 67-102 (305)
285 PF01695 IstB_IS21: IstB-like 69.3 7.5 0.00016 37.4 4.8 35 3-39 49-83 (178)
286 TIGR00041 DTMP_kinase thymidyl 68.1 9.9 0.00021 36.3 5.4 33 2-36 4-36 (195)
287 PRK06761 hypothetical protein; 67.9 7.1 0.00015 40.6 4.5 34 2-37 4-37 (282)
288 PRK14076 pnk inorganic polypho 67.9 12 0.00026 42.7 6.8 93 295-401 288-382 (569)
289 PRK14077 pnk inorganic polypho 67.8 11 0.00024 39.3 5.9 85 298-401 11-98 (287)
290 PRK03378 ppnK inorganic polyph 67.7 11 0.00023 39.5 5.9 90 298-401 6-97 (292)
291 cd02025 PanK Pantothenate kina 67.5 9 0.00019 38.1 5.1 38 4-43 2-41 (220)
292 PRK05642 DNA replication initi 67.2 4.1 8.9E-05 40.8 2.6 60 3-64 47-106 (234)
293 PRK01184 hypothetical protein; 67.1 6.7 0.00015 37.2 4.0 30 1-36 1-30 (184)
294 KOG2825 Putative arsenite-tran 67.1 6.5 0.00014 40.4 3.9 42 2-45 20-61 (323)
295 COG4221 Short-chain alcohol de 65.3 5.4 0.00012 40.6 2.9 29 2-36 7-35 (246)
296 PRK14730 coaE dephospho-CoA ki 65.0 3.1 6.7E-05 40.6 1.2 110 1-147 1-114 (195)
297 PRK06851 hypothetical protein; 65.0 12 0.00025 40.6 5.6 36 2-39 31-66 (367)
298 PF13207 AAA_17: AAA domain; P 64.8 10 0.00023 33.0 4.4 26 4-34 2-27 (121)
299 PRK04885 ppnK inorganic polyph 64.3 13 0.00028 38.4 5.6 35 362-401 35-71 (265)
300 PF07015 VirC1: VirC1 protein; 64.3 14 0.00029 37.5 5.6 41 1-42 1-41 (231)
301 COG0541 Ffh Signal recognition 64.2 46 0.00099 36.8 9.9 118 3-178 102-219 (451)
302 PRK13973 thymidylate kinase; P 63.4 15 0.00032 36.2 5.7 36 2-39 4-39 (213)
303 COG4090 Uncharacterized protei 63.1 9 0.00019 35.3 3.6 42 358-399 81-124 (154)
304 PLN02796 D-glycerate 3-kinase 62.6 10 0.00022 40.6 4.6 37 3-41 102-138 (347)
305 PRK06505 enoyl-(acyl carrier p 62.6 8.5 0.00018 39.1 3.9 31 2-37 8-39 (271)
306 PRK06179 short chain dehydroge 62.5 8.3 0.00018 38.6 3.8 34 2-41 5-38 (270)
307 cd06300 PBP1_ABC_sugar_binding 62.5 32 0.0007 34.0 8.1 33 361-397 59-91 (272)
308 cd01120 RecA-like_NTPases RecA 62.5 15 0.00032 33.0 5.2 35 4-40 2-36 (165)
309 PRK00698 tmk thymidylate kinas 62.4 14 0.00031 35.3 5.3 35 2-38 4-38 (205)
310 cd02027 APSK Adenosine 5'-phos 62.1 11 0.00023 35.0 4.2 36 4-41 2-37 (149)
311 PRK06217 hypothetical protein; 61.8 8.4 0.00018 36.8 3.5 25 1-27 1-25 (183)
312 KOG0635 Adenosine 5'-phosphosu 60.9 13 0.00029 35.4 4.5 32 3-36 33-64 (207)
313 COG0125 Tmk Thymidylate kinase 60.4 20 0.00043 35.7 5.9 37 1-39 3-39 (208)
314 TIGR01360 aden_kin_iso1 adenyl 60.4 11 0.00025 35.4 4.1 25 1-27 3-27 (188)
315 TIGR00235 udk uridine kinase. 59.9 12 0.00027 36.4 4.4 38 2-43 7-44 (207)
316 PRK03708 ppnK inorganic polyph 59.3 19 0.00042 37.3 5.8 87 298-401 1-90 (277)
317 PRK14075 pnk inorganic polypho 59.3 21 0.00047 36.4 6.2 72 298-401 1-72 (256)
318 PRK14528 adenylate kinase; Pro 59.3 13 0.00028 35.8 4.4 25 1-27 1-25 (186)
319 KOG2708 Predicted metalloprote 58.6 32 0.0007 34.9 7.0 50 361-414 69-122 (336)
320 PF10087 DUF2325: Uncharacteri 58.6 56 0.0012 28.0 7.8 80 299-397 1-81 (97)
321 PRK06924 short chain dehydroge 58.4 12 0.00026 36.9 4.0 31 1-37 1-31 (251)
322 PRK07831 short chain dehydroge 58.0 12 0.00027 37.2 4.1 31 2-37 18-48 (262)
323 PRK06731 flhF flagellar biosyn 57.9 20 0.00043 37.1 5.6 141 3-216 77-218 (270)
324 PF06283 ThuA: Trehalose utili 57.8 23 0.00049 34.9 5.9 44 358-401 48-91 (217)
325 TIGR03574 selen_PSTK L-seryl-t 57.6 15 0.00032 36.9 4.6 32 4-37 2-33 (249)
326 COG1484 DnaC DNA replication p 57.5 17 0.00036 37.2 5.0 35 3-39 107-141 (254)
327 PRK08594 enoyl-(acyl carrier p 57.0 12 0.00027 37.5 3.9 31 2-37 8-39 (257)
328 PRK05541 adenylylsulfate kinas 57.0 18 0.0004 34.0 4.9 33 2-36 8-40 (176)
329 TIGR03575 selen_PSTK_euk L-ser 56.6 14 0.0003 39.6 4.3 39 4-44 2-41 (340)
330 cd02019 NK Nucleoside/nucleoti 56.6 22 0.00049 28.4 4.7 32 4-39 2-33 (69)
331 PRK06079 enoyl-(acyl carrier p 56.1 13 0.00028 37.1 3.9 31 2-37 8-39 (252)
332 COG3155 ElbB Uncharacterized p 55.9 18 0.0004 34.6 4.5 49 361-409 84-146 (217)
333 PRK08118 topology modulation p 55.2 13 0.00029 35.2 3.6 25 1-27 1-25 (167)
334 PRK01231 ppnK inorganic polyph 55.0 21 0.00046 37.3 5.4 88 299-401 6-96 (295)
335 PRK07370 enoyl-(acyl carrier p 54.9 15 0.00032 36.9 4.1 30 2-36 7-37 (258)
336 PRK08233 hypothetical protein; 54.9 12 0.00026 35.0 3.3 25 2-28 4-28 (182)
337 COG1660 Predicted P-loop-conta 54.5 11 0.00023 38.9 3.0 28 1-34 1-28 (286)
338 PRK14490 putative bifunctional 54.4 23 0.0005 38.0 5.7 40 4-46 8-48 (369)
339 PF03668 ATP_bind_2: P-loop AT 54.2 12 0.00025 39.1 3.2 28 1-34 1-28 (284)
340 PF03029 ATP_bind_1: Conserved 54.1 13 0.00027 37.7 3.4 116 11-180 4-129 (238)
341 PRK08177 short chain dehydroge 53.9 17 0.00036 35.3 4.2 33 1-39 1-33 (225)
342 TIGR00554 panK_bact pantothena 53.5 24 0.00051 36.9 5.4 40 3-44 64-105 (290)
343 PRK08939 primosomal protein Dn 53.3 21 0.00045 37.6 5.0 36 2-39 157-192 (306)
344 PRK06603 enoyl-(acyl carrier p 52.8 15 0.00033 36.8 3.8 30 2-36 9-39 (260)
345 PF01513 NAD_kinase: ATP-NAD k 52.8 14 0.00031 38.2 3.6 37 360-401 74-110 (285)
346 PRK08415 enoyl-(acyl carrier p 52.6 16 0.00035 37.2 4.0 31 2-37 6-37 (274)
347 PLN02935 Bifunctional NADH kin 52.5 26 0.00057 39.3 5.8 36 361-401 261-296 (508)
348 PRK08690 enoyl-(acyl carrier p 51.9 16 0.00034 36.8 3.7 30 2-36 7-37 (261)
349 PRK06851 hypothetical protein; 51.8 25 0.00055 38.0 5.4 36 2-39 215-250 (367)
350 PRK04761 ppnK inorganic polyph 51.5 13 0.00027 38.1 2.9 37 360-401 23-59 (246)
351 TIGR00455 apsK adenylylsulfate 51.3 28 0.00061 33.0 5.2 36 2-39 19-54 (184)
352 PLN03046 D-glycerate 3-kinase; 50.4 23 0.0005 39.1 4.9 38 3-42 214-251 (460)
353 PRK12828 short chain dehydroge 50.3 20 0.00044 34.5 4.2 33 2-40 8-40 (239)
354 PRK13505 formate--tetrahydrofo 49.9 26 0.00057 39.7 5.3 35 2-37 56-93 (557)
355 PRK12748 3-ketoacyl-(acyl-carr 49.9 19 0.00042 35.6 4.0 31 2-37 6-37 (256)
356 PRK12859 3-ketoacyl-(acyl-carr 49.8 20 0.00044 35.6 4.2 31 2-37 7-38 (256)
357 TIGR00708 cobA cob(I)alamin ad 49.7 34 0.00073 33.1 5.4 35 3-39 7-41 (173)
358 TIGR03420 DnaA_homol_Hda DnaA 49.7 16 0.00034 35.6 3.3 36 2-39 39-74 (226)
359 PRK06101 short chain dehydroge 49.4 17 0.00037 35.7 3.5 31 1-37 1-31 (240)
360 PRK00561 ppnK inorganic polyph 49.3 15 0.00032 37.8 3.1 36 361-401 32-67 (259)
361 COG1028 FabG Dehydrogenases wi 49.2 17 0.00037 35.7 3.5 31 1-37 5-35 (251)
362 COG4126 Hydantoin racemase [Am 48.8 21 0.00046 35.8 3.9 45 361-412 68-112 (230)
363 COG0061 nadF NAD kinase [Coenz 48.3 38 0.00082 35.1 5.9 35 361-400 54-88 (281)
364 PRK07533 enoyl-(acyl carrier p 48.3 21 0.00045 35.8 3.9 31 2-37 11-42 (258)
365 PRK06300 enoyl-(acyl carrier p 48.2 18 0.00039 37.7 3.6 30 2-36 9-39 (299)
366 PF03698 UPF0180: Uncharacteri 48.0 31 0.00068 29.1 4.3 42 299-371 3-44 (80)
367 PF13479 AAA_24: AAA domain 47.7 17 0.00038 35.7 3.2 40 118-165 52-91 (213)
368 PRK02006 murD UDP-N-acetylmura 47.2 24 0.00053 39.3 4.6 31 2-36 122-152 (498)
369 TIGR01500 sepiapter_red sepiap 47.0 23 0.0005 35.2 4.0 33 3-37 2-34 (256)
370 PRK03501 ppnK inorganic polyph 46.8 43 0.00092 34.6 6.0 35 361-400 38-74 (264)
371 PRK09270 nucleoside triphospha 46.8 35 0.00076 33.8 5.3 39 3-43 35-74 (229)
372 PRK06893 DNA replication initi 46.6 14 0.0003 36.8 2.4 59 3-63 41-99 (229)
373 PRK04040 adenylate kinase; Pro 46.5 29 0.00063 33.6 4.5 31 1-34 2-32 (188)
374 PRK06196 oxidoreductase; Provi 46.4 20 0.00044 37.0 3.6 30 2-37 27-56 (315)
375 PRK06953 short chain dehydroge 46.4 27 0.00058 33.9 4.3 33 1-39 1-33 (222)
376 PRK01390 murD UDP-N-acetylmura 46.3 38 0.00082 37.2 5.9 60 2-71 115-176 (460)
377 PRK05693 short chain dehydroge 46.1 21 0.00046 35.8 3.7 32 1-38 1-32 (274)
378 PRK12481 2-deoxy-D-gluconate 3 45.6 21 0.00045 35.6 3.4 30 2-37 9-38 (251)
379 PRK13894 conjugal transfer ATP 45.4 1.1E+02 0.0023 32.5 8.8 24 2-27 149-172 (319)
380 PLN02422 dephospho-CoA kinase 45.4 24 0.00051 35.7 3.8 28 1-34 1-28 (232)
381 PRK12377 putative replication 45.1 34 0.00074 34.9 4.9 35 3-39 103-137 (248)
382 cd00009 AAA The AAA+ (ATPases 45.1 36 0.00078 29.4 4.6 36 2-39 20-55 (151)
383 KOG1610 Corticosteroid 11-beta 45.0 20 0.00044 37.8 3.3 30 1-36 29-58 (322)
384 COG4977 Transcriptional regula 45.0 32 0.0007 36.6 4.8 49 359-407 73-124 (328)
385 PRK06398 aldose dehydrogenase; 44.9 23 0.00049 35.4 3.6 30 2-37 7-36 (258)
386 PRK00779 ornithine carbamoyltr 44.9 1.9E+02 0.0041 30.4 10.6 128 197-369 88-224 (304)
387 PRK08159 enoyl-(acyl carrier p 44.9 24 0.00053 35.7 3.9 30 2-36 11-41 (272)
388 PF03266 NTPase_1: NTPase; In 44.8 36 0.00079 32.4 4.8 34 4-39 2-35 (168)
389 PRK08703 short chain dehydroge 44.6 25 0.00055 34.3 3.9 30 2-37 7-36 (239)
390 PRK08267 short chain dehydroge 44.5 25 0.00055 34.8 3.9 31 1-37 1-31 (260)
391 PRK02496 adk adenylate kinase; 44.4 27 0.00058 33.1 3.9 25 1-27 1-25 (184)
392 PRK13695 putative NTPase; Prov 44.4 40 0.00087 31.7 5.1 31 4-36 3-33 (174)
393 PRK08862 short chain dehydroge 44.2 25 0.00054 34.7 3.7 30 2-37 6-35 (227)
394 PRK03333 coaE dephospho-CoA ki 44.1 24 0.00051 38.5 3.8 28 1-34 1-28 (395)
395 PRK06762 hypothetical protein; 44.1 35 0.00076 31.6 4.5 24 2-27 3-26 (166)
396 PRK09620 hypothetical protein; 44.1 31 0.00068 34.7 4.4 36 2-37 4-49 (229)
397 cd00477 FTHFS Formyltetrahydro 44.0 42 0.0009 37.8 5.7 35 2-37 39-76 (524)
398 PLN02989 cinnamyl-alcohol dehy 43.9 35 0.00075 35.2 4.9 34 2-41 6-39 (325)
399 PRK07890 short chain dehydroge 43.9 28 0.0006 34.3 4.0 32 2-39 6-37 (258)
400 PRK06997 enoyl-(acyl carrier p 43.6 27 0.00058 35.1 3.9 30 2-36 7-37 (260)
401 PRK05866 short chain dehydroge 43.3 22 0.00048 36.5 3.4 30 2-37 41-70 (293)
402 PRK06171 sorbitol-6-phosphate 43.2 29 0.00064 34.5 4.1 32 2-39 10-41 (266)
403 PRK12829 short chain dehydroge 43.2 28 0.00061 34.3 4.0 32 2-39 12-43 (264)
404 PRK00652 lpxK tetraacyldisacch 43.2 64 0.0014 34.3 6.8 36 4-39 51-87 (325)
405 COG0771 MurD UDP-N-acetylmuram 43.1 1.2E+02 0.0025 33.9 9.0 82 298-396 8-98 (448)
406 PF02492 cobW: CobW/HypB/UreG, 43.1 1.5E+02 0.0033 28.1 8.9 32 119-157 68-101 (178)
407 TIGR03325 BphB_TodD cis-2,3-di 43.0 26 0.00056 34.9 3.7 30 2-37 6-35 (262)
408 PRK07889 enoyl-(acyl carrier p 43.0 26 0.00055 35.1 3.7 31 2-37 8-39 (256)
409 PRK09183 transposase/IS protei 42.9 36 0.00078 34.7 4.8 34 3-38 104-137 (259)
410 PF13191 AAA_16: AAA ATPase do 42.6 34 0.00073 31.8 4.2 39 2-42 25-63 (185)
411 PRK07035 short chain dehydroge 42.4 26 0.00057 34.5 3.6 30 2-37 9-38 (252)
412 PF07755 DUF1611: Protein of u 42.2 44 0.00095 35.2 5.3 37 2-39 113-149 (301)
413 PRK07102 short chain dehydroge 42.1 26 0.00055 34.4 3.5 33 1-39 1-33 (243)
414 COG4240 Predicted kinase [Gene 42.1 38 0.00083 34.6 4.5 36 3-40 52-88 (300)
415 TIGR02322 phosphon_PhnN phosph 42.1 24 0.00052 33.2 3.1 27 2-30 2-28 (179)
416 cd00984 DnaB_C DnaB helicase C 42.0 1.2E+02 0.0026 29.8 8.3 89 117-215 107-203 (242)
417 PF07931 CPT: Chloramphenicol 42.0 18 0.00039 34.9 2.3 24 2-27 2-25 (174)
418 PRK04296 thymidine kinase; Pro 42.0 66 0.0014 31.0 6.2 35 2-38 3-37 (190)
419 smart00852 MoCF_biosynth Proba 41.9 27 0.00059 31.6 3.3 67 314-393 21-88 (135)
420 PRK07067 sorbitol dehydrogenas 41.8 28 0.00061 34.4 3.7 30 2-37 7-36 (257)
421 PRK06182 short chain dehydroge 41.7 29 0.00064 34.7 3.9 31 2-38 4-34 (273)
422 PRK12339 2-phosphoglycerate ki 41.7 27 0.00059 34.2 3.5 24 2-27 4-27 (197)
423 PRK07414 cob(I)yrinic acid a,c 41.3 23 0.00051 34.4 2.9 28 12-39 28-57 (178)
424 PRK06547 hypothetical protein; 41.1 34 0.00074 32.7 4.0 23 2-26 16-38 (172)
425 PRK06463 fabG 3-ketoacyl-(acyl 41.1 30 0.00064 34.3 3.7 29 2-36 8-36 (255)
426 TIGR01133 murG undecaprenyldip 41.0 30 0.00066 35.7 3.9 34 1-38 1-35 (348)
427 COG0572 Udk Uridine kinase [Nu 40.9 35 0.00076 34.3 4.1 38 3-44 10-47 (218)
428 KOG4180 Predicted kinase [Gene 40.7 26 0.00056 37.2 3.2 61 311-397 75-135 (395)
429 PRK08303 short chain dehydroge 40.6 27 0.00059 36.2 3.5 30 2-37 9-38 (305)
430 cd06305 PBP1_methylthioribose_ 40.6 1.5E+02 0.0032 29.1 8.7 33 361-397 54-86 (273)
431 PRK06835 DNA replication prote 40.6 42 0.00092 35.7 5.0 35 3-39 185-219 (329)
432 PRK03604 moaC bifunctional mol 40.4 62 0.0013 34.3 6.1 97 57-167 135-241 (312)
433 PRK05579 bifunctional phosphop 40.3 35 0.00076 37.3 4.4 38 2-39 189-236 (399)
434 KOG3354 Gluconate kinase [Carb 40.3 23 0.0005 34.0 2.6 27 1-28 11-37 (191)
435 PRK06947 glucose-1-dehydrogena 40.3 33 0.00071 33.6 3.9 30 1-36 2-31 (248)
436 PRK07261 topology modulation p 40.2 23 0.00051 33.6 2.7 22 4-27 3-24 (171)
437 PLN02730 enoyl-[acyl-carrier-p 40.1 28 0.00061 36.4 3.5 30 2-36 10-40 (303)
438 PF01935 DUF87: Domain of unkn 39.9 47 0.001 32.6 4.9 36 2-41 24-60 (229)
439 PRK01185 ppnK inorganic polyph 39.8 88 0.0019 32.4 7.0 32 362-401 52-83 (271)
440 TIGR01832 kduD 2-deoxy-D-gluco 39.8 31 0.00068 33.8 3.7 30 2-37 6-35 (248)
441 PRK03839 putative kinase; Prov 39.8 33 0.00071 32.4 3.7 22 4-27 3-24 (180)
442 PRK06526 transposase; Provisio 39.8 32 0.00069 35.1 3.8 32 3-36 100-131 (254)
443 PRK12823 benD 1,6-dihydroxycyc 39.8 32 0.0007 34.0 3.8 30 2-37 9-38 (260)
444 TIGR01499 folC folylpolyglutam 39.7 39 0.00084 36.4 4.6 34 2-39 19-52 (397)
445 PRK05854 short chain dehydroge 39.6 28 0.00062 36.1 3.5 30 2-37 15-44 (313)
446 PF00910 RNA_helicase: RNA hel 39.6 33 0.00072 29.8 3.4 56 4-64 1-58 (107)
447 PRK08356 hypothetical protein; 39.6 39 0.00084 32.6 4.2 27 2-34 6-32 (195)
448 PRK12745 3-ketoacyl-(acyl-carr 39.4 32 0.00068 33.8 3.6 30 2-37 3-32 (256)
449 PF12846 AAA_10: AAA-like doma 39.4 46 0.001 33.3 4.9 35 3-41 3-37 (304)
450 PRK09730 putative NAD(P)-bindi 39.4 34 0.00073 33.3 3.8 30 1-36 1-30 (247)
451 PRK14188 bifunctional 5,10-met 39.4 4.8E+02 0.01 27.4 14.4 171 117-329 14-187 (296)
452 PRK12747 short chain dehydroge 39.3 34 0.00074 33.7 3.9 29 2-36 5-33 (252)
453 PRK07952 DNA replication prote 39.3 48 0.001 33.7 4.9 35 3-39 101-135 (244)
454 TIGR01082 murC UDP-N-acetylmur 39.3 52 0.0011 36.1 5.7 31 2-36 100-130 (448)
455 PRK07577 short chain dehydroge 39.1 37 0.00081 32.8 4.1 33 2-40 4-36 (234)
456 PF13238 AAA_18: AAA domain; P 39.1 31 0.00068 29.8 3.2 22 4-27 1-22 (129)
457 PRK06180 short chain dehydroge 39.1 32 0.00069 34.7 3.7 32 2-39 5-36 (277)
458 PLN02780 ketoreductase/ oxidor 38.9 27 0.00059 36.5 3.2 32 2-39 54-85 (320)
459 PF13604 AAA_30: AAA domain; P 38.9 46 0.001 32.3 4.6 35 2-38 19-53 (196)
460 PRK14194 bifunctional 5,10-met 38.8 4.9E+02 0.011 27.4 14.3 193 117-371 16-211 (301)
461 COG4242 CphB Cyanophycinase an 38.8 57 0.0012 33.5 5.2 79 315-405 71-154 (293)
462 COG3367 Uncharacterized conser 38.8 45 0.00098 35.4 4.7 44 2-54 149-192 (339)
463 PRK08339 short chain dehydroge 38.8 33 0.00071 34.5 3.7 30 2-37 9-38 (263)
464 PLN02686 cinnamoyl-CoA reducta 38.7 44 0.00095 35.6 4.8 31 1-37 53-83 (367)
465 PLN02913 dihydrofolate synthet 38.4 29 0.00062 39.1 3.5 34 2-39 76-109 (510)
466 PRK09186 flagellin modificatio 38.1 37 0.0008 33.3 3.9 30 2-37 5-34 (256)
467 KOG1014 17 beta-hydroxysteroid 38.1 40 0.00086 35.6 4.2 32 2-39 50-81 (312)
468 PTZ00451 dephospho-CoA kinase; 38.0 34 0.00074 34.8 3.7 29 1-35 1-30 (244)
469 PRK12742 oxidoreductase; Provi 38.0 37 0.0008 32.9 3.8 29 2-36 7-35 (237)
470 PRK06114 short chain dehydroge 37.9 34 0.00073 33.9 3.6 30 2-37 9-38 (254)
471 PRK08416 7-alpha-hydroxysteroi 37.8 32 0.00069 34.3 3.4 29 2-36 9-37 (260)
472 PRK07677 short chain dehydroge 37.7 37 0.00079 33.5 3.8 31 2-38 2-32 (252)
473 PRK06523 short chain dehydroge 37.7 43 0.00093 33.1 4.3 32 2-39 10-41 (260)
474 PRK00081 coaE dephospho-CoA ki 37.7 39 0.00083 32.7 3.9 28 1-34 2-29 (194)
475 TIGR01472 gmd GDP-mannose 4,6- 37.6 40 0.00087 35.2 4.3 32 2-39 1-32 (343)
476 smart00382 AAA ATPases associa 37.4 31 0.00068 29.3 2.9 28 2-31 3-30 (148)
477 PRK04148 hypothetical protein; 37.4 53 0.0012 30.5 4.5 91 13-151 24-114 (134)
478 PRK13506 formate--tetrahydrofo 37.3 40 0.00086 38.4 4.3 32 2-34 55-89 (578)
479 PRK08116 hypothetical protein; 37.3 54 0.0012 33.7 5.0 34 4-39 117-150 (268)
480 cd02026 PRK Phosphoribulokinas 37.2 45 0.00097 34.4 4.4 37 4-44 2-38 (273)
481 PRK00279 adk adenylate kinase; 37.2 37 0.0008 33.2 3.7 22 4-27 3-24 (215)
482 PRK02231 ppnK inorganic polyph 37.2 33 0.00071 35.6 3.4 36 361-401 41-76 (272)
483 cd06320 PBP1_allose_binding Pe 37.1 1.2E+02 0.0026 29.9 7.5 33 361-397 56-88 (275)
484 PLN00198 anthocyanidin reducta 37.1 54 0.0012 34.1 5.1 33 2-40 10-42 (338)
485 PRK06940 short chain dehydroge 37.1 31 0.00067 34.9 3.2 28 2-37 3-30 (275)
486 PRK08643 acetoin reductase; Va 37.0 41 0.00088 33.2 4.0 30 2-37 3-32 (256)
487 PLN02924 thymidylate kinase 36.9 59 0.0013 32.4 5.1 36 2-39 17-52 (220)
488 PRK10846 bifunctional folylpol 36.9 42 0.0009 36.6 4.4 33 2-38 50-82 (416)
489 PLN02166 dTDP-glucose 4,6-dehy 36.9 44 0.00096 36.8 4.6 29 4-38 123-151 (436)
490 PRK08309 short chain dehydroge 36.8 55 0.0012 31.5 4.7 27 4-37 3-29 (177)
491 PRK07666 fabG 3-ketoacyl-(acyl 36.7 38 0.00083 33.0 3.7 31 2-38 8-38 (239)
492 PRK15181 Vi polysaccharide bio 36.6 44 0.00096 35.1 4.4 31 2-38 16-46 (348)
493 COG2109 BtuR ATP:corrinoid ade 36.4 20 0.00044 35.2 1.6 28 10-37 33-62 (198)
494 PLN02583 cinnamoyl-CoA reducta 36.3 45 0.00097 34.2 4.3 30 2-37 7-36 (297)
495 PRK07062 short chain dehydroge 36.2 39 0.00084 33.6 3.7 32 2-39 9-40 (265)
496 PLN02348 phosphoribulokinase 36.2 63 0.0014 35.3 5.5 43 3-47 51-108 (395)
497 cd01538 PBP1_ABC_xylose_bindin 36.2 1.8E+02 0.0039 29.2 8.7 33 361-397 54-86 (288)
498 PRK05867 short chain dehydroge 36.1 36 0.00078 33.6 3.5 29 2-36 10-38 (253)
499 PRK06125 short chain dehydroge 36.1 38 0.00082 33.6 3.6 31 2-38 8-38 (259)
500 PRK07806 short chain dehydroge 36.1 41 0.00089 32.9 3.8 30 2-37 7-36 (248)
No 1
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-194 Score=1511.17 Aligned_cols=529 Identities=57% Similarity=0.948 Sum_probs=509.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||||||||+|||||||+|||||+|||+|||+|+++|+||||||||||||||||||||||+||+||||||||||||+++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ ..+||||+|||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~-------~~~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD-------STADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC-------CCCCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||+.++|++|++|||+||||||+++||+||||||||||+|||+|||||+||||++.+++.+.++|||+||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL 320 (561)
||+..|++++|++|+.|++||+.+.|+++|+|+. +.+++++|+++++++.++.+.++||+||||.+++|||.|+++||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~~--~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLNA--PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 9999999999999999999999999999999963 56699999999999998877799999999999999999999999
Q ss_pred HHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc-CCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 008567 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR-NAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICL 399 (561)
Q Consensus 321 ~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~-~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICL 399 (561)
+|+|++..++|++.||+++++++++. +.+. .+|||++|||||.|+++|++.+++|||||++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~-----------~~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENA-----------AELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccch-----------hhhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 99999999999999999999987543 1222 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCC-cccCCcccccCceeEEEcCCCcccccccCCceeEEeeee
Q 008567 400 GMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGS-RTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHR 478 (561)
Q Consensus 400 GmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~-~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~ 478 (561)
|||++++||+|||+|+++|+|+||++++++||+++||+++ ...+|+|||||.++|.++++ |+++++|+ +..|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999864 56799999999999999999 99999997 588999999
Q ss_pred eeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhhH
Q 008567 479 HRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQLE 551 (561)
Q Consensus 479 HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~~ 551 (561)
|||+|||+|++.++.+|++|+|+++||.++|++|+++||||+|+||||||.|+|.+|||||.+|++||.++.+
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988653
No 2
>PLN02327 CTP synthase
Probab=100.00 E-value=2.5e-191 Score=1532.97 Aligned_cols=555 Identities=82% Similarity=1.294 Sum_probs=535.5
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||||||||+|||||||+|||||+|||++||+|+++|+||||||||||||||||||||||+||+||||||||||||+|+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..++||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||+.++|++|++||||||||||++++|+||||||||||+||+.|||||+|||||+.+++++.++|||+||+|+.++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL 320 (561)
||+.+|++++|+||++|++||+.+.|+++|+|+...+.+++.+|.++++++.++.+.++||+||||.++.|||.|+.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999731245679999999999988878899999999999999999999999
Q ss_pred HHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008567 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLG 400 (561)
Q Consensus 321 ~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLG 400 (561)
+|+|+++.++|++.||+++++++.+...+|.+|+.+|+.|.++|||++|||||+++.++++.++++++++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999987766668889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEc-CCCcccccccCCceeEEeeeee
Q 008567 401 MQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQ-TPDCVTSKLYRNAEYVDERHRH 479 (561)
Q Consensus 401 mQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~-~~~s~l~~iyg~~~~I~~~h~H 479 (561)
||+|+++|||||+|++||+|+||++++++||+.+||+++...+|+|||||.+++.+. ++ |++.++|+....|++||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999988888999999999999997 55 9999999754458899999
Q ss_pred eeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhhHHHHhh
Q 008567 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQLEAYLNT 556 (561)
Q Consensus 480 rY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~~~~~~~ 556 (561)
||+||+++++.+++.|++++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|+++|.+++++++++
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~~~~~ 556 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHhhhcC
Confidence 99999999999988999999999998789999999999999999999999999999999999999999999887653
No 3
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-191 Score=1461.68 Aligned_cols=556 Identities=70% Similarity=1.147 Sum_probs=543.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++|||||||||++||+|||+||||||||||||||||+|++||+++|++|||+++.+|||||||+||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||++.+|++|+|+|||+|||.|.+.|||||||||||||+||++|+.||+|+|||..++..+.++|||+||+|++++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccC-CCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIA-APPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKA 319 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~-~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~a 319 (561)
|++++||.++|.+|++|++||+.+++.++|+|+... ..+.++.|.++.++..+....++||+||||+.+.|||.|+++|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999999999999999998632 2368999999999988887889999999999999999999999
Q ss_pred HHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 008567 320 LLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICL 399 (561)
Q Consensus 320 L~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICL 399 (561)
|+|+++++..+++|.||++.+||+.....+|.+|+.+|+.|+.+|||++|||||+|+.+|++.|++|||||++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeee
Q 008567 400 GMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRH 479 (561)
Q Consensus 400 GmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~H 479 (561)
|||++++||+||++|++||+|+||++++++|++.+|||....|||+|||||.++..+.+++|..+++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999988889999999
Q ss_pred eeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhhHHHHhh
Q 008567 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQLEAYLNT 556 (561)
Q Consensus 480 rY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~~~~~~~ 556 (561)
||||||+.+..+|.+|+.|++.+.+|.++|++|+++||||+|+|||||+.++|.+|+|+|.+++.++.+++..++++
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~~~l~~ 557 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLDAYLQR 557 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988874
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=6e-182 Score=1458.61 Aligned_cols=528 Identities=56% Similarity=0.960 Sum_probs=506.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||||||||+|||||||+|||||+|||++||+|+++|+||||||||||||||||||||||+||+||||||||||||+++
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++||+||||||++||+|||+|||||||||||||||||||+||+++| .++|||||||||||||||||||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999998 57899999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||+.++|++|++||||||||||++++|+||||||||||+||++|||||+|||||+.+++++.++|||+||+|+.++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL 320 (561)
||+.+|++++|+||++|++||+.+.|+++|+|+. +.++++.|+++++++.++.+.++||+||||.++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~~--~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLEA--PEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCCC--CCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999974 56689999999999998888899999999999999999999999
Q ss_pred HHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008567 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLG 400 (561)
Q Consensus 321 ~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLG 400 (561)
+|+|+++.++|++.|++++++++.+ .++.|.++|||++|||||+++.++.+.++++++++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999886532 236789999999999999998899999999999999999999999
Q ss_pred HHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCC-cccCCcccccCceeEEEcCCCcccccccCCceeEEeeeee
Q 008567 401 MQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGS-RTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRH 479 (561)
Q Consensus 401 mQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~-~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~H 479 (561)
||+|+++|||+++|++||+|+||+++++++++.+|+++. ...+|++||+|.|+|.+.++ |+++++|+ +..+.+||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999998743 45789999999999999988 99999997 6678899999
Q ss_pred eeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhh
Q 008567 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQL 550 (561)
Q Consensus 480 rY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~ 550 (561)
||+||+.+.+.++..|++++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|+++|.++.
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999888877899999999887679999999999999999999999999999999999999997643
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=3.4e-180 Score=1445.12 Aligned_cols=524 Identities=58% Similarity=0.956 Sum_probs=501.5
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||||||||+||||||++|||||+|||++||+|+++|+|||||+||||||||||||||||+||+||||||||||||+|+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ .+++||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999984 368999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||+.++|++|++||||||||||++++|+||||||||||+||+.|||||+|||||+.+++++.++|||+||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL 320 (561)
||+++|++++|+||++|++||+.+.|+++|+|+. +.+++++|.++++++.++.+.++||+||||.++.|||.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~~--~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLNC--DEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCCC--CCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 45579999999999988878899999999999999999999999
Q ss_pred HHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008567 321 LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLG 400 (561)
Q Consensus 321 ~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLG 400 (561)
+++|+++.++|.+.|+++++++..+ .+.|+++|||++|||||+++.++.+.++++++++++|+||||+|
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998765322 13578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCC-cccCCcccccCceeEEEcCCCcccccccCCceeEEeeeee
Q 008567 401 MQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGS-RTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRH 479 (561)
Q Consensus 401 mQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~-~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~H 479 (561)
||+|++++|||++|+++|+|+||++++++||+.+|+++. ...+|+|||||.|++.+.++ |+++++|+ ...+.+||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999865 57899999999999999998 99999997 4567789999
Q ss_pred eeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHH
Q 008567 480 RYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILA 545 (561)
Q Consensus 480 rY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~a 545 (561)
||+||+.+.+.++..|++++|+++||.+||++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 999999998888789999999999976799999999999999999999999999999999999975
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=3.9e-130 Score=966.13 Aligned_cols=276 Identities=64% Similarity=1.071 Sum_probs=236.5
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||||||||||+|||||||+|||||+|||++||+|+++|+|||||+||||||||||||||||+||+||||||||||||+++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ 160 (561)
+|+++||+||||||++||+|||+|+|||+|||||||||||||+||+++|+ ..+|||||||+|||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999995 348999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCC
Q 008567 161 EALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGN 240 (561)
Q Consensus 161 ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~ 240 (561)
||+|||+.++|++|++||||||||||++++|+||||||||||+||+.|||||+|||||+.+++++.|+|||+||+|+.++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHH
Q 008567 241 ILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAW 284 (561)
Q Consensus 241 Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w 284 (561)
||+.+|++++|+||++|++||+.+.|+++|+|+. +.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~~--~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLEK--KEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcCC--CCCCcccC
Confidence 9999999999999999999999999999999984 56688888
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=1.1e-121 Score=900.37 Aligned_cols=255 Identities=62% Similarity=1.047 Sum_probs=251.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVR 81 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~ 81 (561)
|||||||||+||||||++|||||+|||+|||+|+++|+|||||+||||||||||||||||+||+||||||||||||++++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHH
Q 008567 82 LTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIE 161 (561)
Q Consensus 82 l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~e 161 (561)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||+||||||||||||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999994 3689999999999999999999999
Q ss_pred HHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCe
Q 008567 162 ALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNI 241 (561)
Q Consensus 162 a~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~V 241 (561)
|+|||+.++|++|+|||||||||||++++|+|||||||||+.||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCcchhcHHHHhcch
Q 008567 242 LNIHDVPNIWHVPLLLRNQNA 262 (561)
Q Consensus 242 i~~~dvdt~y~vp~~l~~qG~ 262 (561)
++..|++++|+||+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=5.4e-59 Score=459.29 Aligned_cols=227 Identities=32% Similarity=0.527 Sum_probs=210.4
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
++||+||||.++.|||.|+.+||+|+|++..++|++.||++++++++ +.|+++|||++|||||.+++
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg~ 68 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRND 68 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCcccH
Confidence 69999999999999999999999999999999999999999988642 35889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEc
Q 008567 378 GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQ 457 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~ 457 (561)
+|++.++++||++++|+||||||||+++++|+||++|++||+|+||++++++|++.+|+. ....+ .|+|.+.
T Consensus 69 ~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~~-------~h~v~l~ 140 (229)
T PRK06186 69 DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVEK-------TGDIRLR 140 (229)
T ss_pred hHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-ccccC-------ceEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999972 22222 2789998
Q ss_pred CCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchH
Q 008567 458 TPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSA 537 (561)
Q Consensus 458 ~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~ 537 (561)
++ |++.++|| +..+.+||||||+||+.+.+.+++.||+++|+++||. ||++|+++||||+|||||||+.++|..++|
T Consensus 141 ~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~ 217 (229)
T PRK06186 141 PG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPPP 217 (229)
T ss_pred CC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCCH
Confidence 88 99999997 5668899999999999998888899999999999996 999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008567 538 LFLGLILAATK 548 (561)
Q Consensus 538 LF~~Fi~aa~~ 548 (561)
||.+|+++|.+
T Consensus 218 LF~~Fv~aa~~ 228 (229)
T PRK06186 218 LVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=384.39 Aligned_cols=278 Identities=18% Similarity=0.234 Sum_probs=223.2
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcC-CCccCCCCCh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLN-LLSIAAPPNL 281 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~-l~~~~~~~~~ 281 (561)
+.||.++++.++|+|+.+..+++||++.||..||+.++|++|.++||| +|++.||++|+|++.+..-. ++........
T Consensus 68 d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~ 146 (368)
T COG0505 68 DFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLERA 146 (368)
T ss_pred hccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHHH
Confidence 459999999999999999999999999999999999999999999999 99999999999998665431 2210000000
Q ss_pred hHH-----HHHHhhhcC------------CCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccc
Q 008567 282 QAW-----TKRAETYDN------------LKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDE 344 (561)
Q Consensus 282 ~~w-----~~l~~~~~~------------~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~ 344 (561)
..| .+++++++. .....+|+++ || +.+ .||++.|..+||++.+ ++|-.+.
T Consensus 147 ~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~-GvK---~nIlr~L~~rg~~vtV---VP~~t~~----- 213 (368)
T COG0505 147 RAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DF-GVK---RNILRELVKRGCRVTV---VPADTSA----- 213 (368)
T ss_pred hhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-Ec-Ccc---HHHHHHHHHCCCeEEE---EcCCCCH-----
Confidence 111 123444332 1235799999 89 454 8999999999999987 4444432
Q ss_pred cccCCCcchhhHHHhc-cCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCC
Q 008567 345 SAKLTPKDHAAAWETL-RNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNE 422 (561)
Q Consensus 345 ~~~~d~~~~~~~~~~l-~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~E 422 (561)
.+.+ .++|||+|++|||+|. .+..+..++..++.++|+||||||||||++|+|+++.+|
T Consensus 214 ------------eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km------- 274 (368)
T COG0505 214 ------------EEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM------- 274 (368)
T ss_pred ------------HHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec-------
Confidence 1333 5899999999999995 688999999999999999999999999999999988653
Q ss_pred CCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe
Q 008567 423 FDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD 502 (561)
Q Consensus 423 f~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~ 502 (561)
+++|+|.| |||.-... ++.+|+ +|||+|+|+++.+. ..+ +++..+
T Consensus 275 ----------------kFGHrG~N-----hPV~dl~t---------grv~IT-SQNHGyaVd~~s~~---~~~-~vth~n 319 (368)
T COG0505 275 ----------------KFGHRGAN-----HPVKDLDT---------GRVYIT-SQNHGYAVDEDSLV---ETL-KVTHVN 319 (368)
T ss_pred ----------------ccCCCCCC-----cCcccccC---------CeEEEE-ecCCceecChhhcC---CCc-eeEEEe
Confidence 78999999 89874332 356775 79999999988443 223 788888
Q ss_pred -CCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhh
Q 008567 503 -ETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQL 550 (561)
Q Consensus 503 -~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~ 550 (561)
+||+ +|++++++.| +++||||||.+++|++.++||+.|++.+.+..
T Consensus 320 lnDgT-vEGi~h~~~P-~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 320 LNDGT-VEGIRHKDLP-AFSVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred CCCCC-ccceecCCCc-eEEEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 5676 9999999999 89999999999999999999999999987653
No 10
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=1.3e-43 Score=354.28 Aligned_cols=233 Identities=61% Similarity=1.029 Sum_probs=208.2
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
++||+||||+++.|+|.|+.++|++++.+...++.+.|+++++++..+ .++.|.++||||+|||++.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 489999999999999999999999999888888889999987654321 1256789999999999999988
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCC-CcccCCcccccCceeEEE
Q 008567 378 GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEG-SRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~-~~~~~G~~mrlG~~~v~l 456 (561)
++.+.++++++++++|+||||+|||+|+.++|+++.+++++++.|+++...++++.++... +..++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8889999999999999999999999999999999999999999999888899999887652 467789999999999999
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeC-CCCeEEEEEeCCCCcEEEEcccCCCCCCCCCc
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDE-TGKRMEILELPSHPFYVGVQFHPEFKSRPGRP 535 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~-dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~ 535 (561)
.++ |++.++|+ +..+.++|+|+|+|+++++..+...|++++|++. ||. ||++|++++||++|||||||+.+.+.++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~-ieaie~~~~pf~lgvQ~HPE~~~~~~~~ 227 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL-VEIVELPDHPFFVGTQFHPEFKSRPLKP 227 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe-EEEEEcCCCCcEEEEECCCCCcCCCCCc
Confidence 988 89999997 5556679999999999998765578999999998 565 9999999999989999999999998888
Q ss_pred hHHHHHHH
Q 008567 536 SALFLGLI 543 (561)
Q Consensus 536 ~~LF~~Fi 543 (561)
++||.+|+
T Consensus 228 ~~lF~~fv 235 (235)
T cd01746 228 HPLFVGFV 235 (235)
T ss_pred cHHHHHhC
Confidence 99999995
No 11
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=3.6e-41 Score=354.16 Aligned_cols=275 Identities=17% Similarity=0.253 Sum_probs=211.5
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQ 282 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~ 282 (561)
++||.+|++.++|||+.+..+++|+++.+|..|++.++|++|.+|||| +|+++||++|+|++++..-..+.........
T Consensus 65 ~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 143 (358)
T TIGR01368 65 DAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKAS 143 (358)
T ss_pred hhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999 9999999999999887542211100000000
Q ss_pred HH-----HHHHhhhcCC------C----CceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc
Q 008567 283 AW-----TKRAETYDNL------K----NSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK 347 (561)
Q Consensus 283 ~w-----~~l~~~~~~~------~----~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~ 347 (561)
.| .+++.+++.. . ...+|+++ || +.+ .|++++|+.+|+.+.+ ++|..+ +
T Consensus 144 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~-G~k---~ni~~~L~~~G~~v~v---vp~~~~--~------ 207 (358)
T TIGR01368 144 VSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DF-GVK---QNILRRLVKRGCEVTV---VPYDTD--A------ 207 (358)
T ss_pred hCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eC-CcH---HHHHHHHHHCCCEEEE---EcCCCC--H------
Confidence 11 1345544431 1 12689999 89 454 7999999999998765 344321 1
Q ss_pred CCCcchhhHHHhc-cCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCC
Q 008567 348 LTPKDHAAAWETL-RNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDS 425 (561)
Q Consensus 348 ~d~~~~~~~~~~l-~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~ 425 (561)
.+.. ..+|||||+||||++. ....++.++++.+ ++|+||||||||+|+.++|+++..+
T Consensus 208 ---------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl---------- 267 (358)
T TIGR01368 208 ---------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKM---------- 267 (358)
T ss_pred ---------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceecc----------
Confidence 0222 2579999999999985 4667888999887 9999999999999999999987432
Q ss_pred CCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe-CC
Q 008567 426 ETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD-ET 504 (561)
Q Consensus 426 ~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~-~d 504 (561)
+++|+|.+ |++..... ++..+ .+++|+|+|+++.+. ..++++++.+ +|
T Consensus 268 -------------~~gh~G~n-----hpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~nD 316 (358)
T TIGR01368 268 -------------KFGHRGGN-----HPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLND 316 (358)
T ss_pred -------------CcCcCCCc-----eeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECCC
Confidence 34667765 77765432 12334 368899999876542 3689999998 57
Q ss_pred CCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHH
Q 008567 505 GKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAAT 547 (561)
Q Consensus 505 g~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~ 547 (561)
|. ||+++++++| ++|||||||+.++|.+..+||++|++++.
T Consensus 317 g~-Vegi~h~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 317 GT-VEGIRHKDLP-VFSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred Cc-EEEEEECCCC-EEEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 76 9999999999 79999999999999999999999998874
No 12
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=3e-41 Score=355.20 Aligned_cols=273 Identities=17% Similarity=0.238 Sum_probs=211.1
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQ 282 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~ 282 (561)
++||.+|++.++|||+.+..+++|+++.+|..|++.++|++|.+|||| +|+++||+.|+|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999 9999999999999887542111000000011
Q ss_pred HH-----HHHHhhhcCC------C----CceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc
Q 008567 283 AW-----TKRAETYDNL------K----NSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK 347 (561)
Q Consensus 283 ~w-----~~l~~~~~~~------~----~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~ 347 (561)
.| .+++.++++. . ...+|+++ ||+ .+ .|++++|+.+|+.+.+ ++|-.+.
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G-~k---~nivr~L~~~G~~v~v---vp~~~~~-------- 211 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG-VK---RNILRELAERGCRVTV---VPATTTA-------- 211 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC-cH---HHHHHHHHHCCCEEEE---EeCCCCH--------
Confidence 11 2345555432 1 14699999 784 44 7999999999998766 3433210
Q ss_pred CCCcchhhHHHhc-cCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCC
Q 008567 348 LTPKDHAAAWETL-RNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDS 425 (561)
Q Consensus 348 ~d~~~~~~~~~~l-~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~ 425 (561)
.+.. .++|||||+||||++. ....++.++++.++++|+||||+|||+|+.++|+++.++
T Consensus 212 ---------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl---------- 272 (360)
T PRK12564 212 ---------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKM---------- 272 (360)
T ss_pred ---------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEecc----------
Confidence 0221 2799999999999974 466788999999889999999999999999999987432
Q ss_pred CCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe-CC
Q 008567 426 ETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD-ET 504 (561)
Q Consensus 426 ~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~-~d 504 (561)
+.+|.|.+ |++..... ++..+ .+|+|+|+|+++.+ +.++++++.+ +|
T Consensus 273 -------------~~gh~G~~-----~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 273 -------------KFGHRGAN-----HPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred -------------CCCccCCc-----eeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 23456655 67765432 12333 37889999987654 4679999998 57
Q ss_pred CCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHH
Q 008567 505 GKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILA 545 (561)
Q Consensus 505 g~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~a 545 (561)
+. +|+++++++| ++|||||||+.++|.+..+||++|+++
T Consensus 321 g~-iegi~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 321 GT-VEGLRHKDLP-AFSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred Cc-EEEEEECCCC-EEEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 76 9999999999 799999999999999999999999976
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=9.8e-40 Score=342.83 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=211.1
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQ 282 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~ 282 (561)
++||.+|++.++|||+.+..+++|+++.+|..|++.++|++|.++||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 579999999999999999999999999999999999999999999999 99999999999998775421 10 0000111
Q ss_pred HH---HHHHhhhcCC------CCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcch
Q 008567 283 AW---TKRAETYDNL------KNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDH 353 (561)
Q Consensus 283 ~w---~~l~~~~~~~------~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~ 353 (561)
.| .++++.+++. ....+|+++ ||+ . +.+++++|+.+|+.+.+ ++|..+ +
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G-~---k~ni~~~L~~~G~~v~v---vp~~~~--~------------ 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG-Y---KKSILRSLSKRGCKVTV---LPYDTS--L------------ 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC-H---HHHHHHHHHHCCCeEEE---EECCCC--H------------
Confidence 11 2455555542 234789999 784 4 48999999999988766 343221 0
Q ss_pred hhHHHhc--cCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCc
Q 008567 354 AAAWETL--RNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNP 430 (561)
Q Consensus 354 ~~~~~~l--~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~ 430 (561)
+.+ .++|||||+||||++. ....++.++.+.++ +|+||||+|||+|+.++|+++.++
T Consensus 202 ----~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl--------------- 261 (354)
T PRK12838 202 ----EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKL--------------- 261 (354)
T ss_pred ----HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecC---------------
Confidence 222 3799999999999974 34567788888876 999999999999999999998432
Q ss_pred eeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe-CCCCeEE
Q 008567 431 VVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD-ETGKRME 509 (561)
Q Consensus 431 vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~-~dg~~vE 509 (561)
+.+|.|++ |++..... ++..+ .+++|+|.++++.+. ..++.+++.+ +|+. +|
T Consensus 262 --------~~gh~G~~-----hpV~~~~~---------~~~~~-ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~-Ve 314 (354)
T PRK12838 262 --------PFGHRGAN-----HPVIDLTT---------GRVWM-TSQNHGYVVDEDSLD---GTPLSVRFFNVNDGS-IE 314 (354)
T ss_pred --------CCCccCCc-----eEEEECCC---------CeEEE-eccchheEecccccC---CCCcEEEEEECCCCe-EE
Confidence 23566665 78876443 12223 367899999875442 3468899986 5775 99
Q ss_pred EEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHH
Q 008567 510 ILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATK 548 (561)
Q Consensus 510 ~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~ 548 (561)
+++++++| ++|||||||+.++|.+..+||++|++++.+
T Consensus 315 ai~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 315 GLRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 99999999 899999999999999889999999998854
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=337.89 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=209.5
Q ss_pred HHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccC-----
Q 008567 202 RELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIA----- 276 (561)
Q Consensus 202 ~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~----- 276 (561)
.++||.+|++.++|||+.+..+++|+++.+|..|++.++|++|.+|||| +|+++||++|+|++++..-..+...
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999 9999999999999888652221100
Q ss_pred -CCCChhHHHHHHhhhcCC-----------------------CCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeee
Q 008567 277 -APPNLQAWTKRAETYDNL-----------------------KNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPS 332 (561)
Q Consensus 277 -~~~~~~~w~~l~~~~~~~-----------------------~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~ 332 (561)
..+.+ ...++++++++. ..+.+|+++ |+ +++ .+++++|+.+|+++.+
T Consensus 149 ~~~~~~-~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~-g~k---~ni~~~L~~~G~~v~v--- 219 (382)
T CHL00197 149 KESPHM-PSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DF-GVK---YNILRRLKSFGCSITV--- 219 (382)
T ss_pred HcCCCC-ccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-EC-CcH---HHHHHHHHHCCCeEEE---
Confidence 00000 112344443321 114689999 78 555 7899999999998766
Q ss_pred eEeecCCCcccccccCCCcchhhHHHh--ccCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc
Q 008567 333 IDWIAASDLEDESAKLTPKDHAAAWET--LRNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFA 409 (561)
Q Consensus 333 i~~i~~~~l~~~~~~~d~~~~~~~~~~--l~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g 409 (561)
++|-.+. +. ..++|||||+||||++. ....++.++.+.+.++|+||||||||+|+.++|
T Consensus 220 vp~~~~~------------------~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~G 281 (382)
T CHL00197 220 VPATSPY------------------QDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALE 281 (382)
T ss_pred EcCCCCH------------------HHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhC
Confidence 3442211 22 23799999999999985 455667788887779999999999999999999
Q ss_pred ccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCccccc
Q 008567 410 RSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIG 489 (561)
Q Consensus 410 ~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~ 489 (561)
+++..+ +.+|.|.+ |++.+. ++..+. .++|+|.++++.+.
T Consensus 282 g~v~k~-----------------------~~Gh~g~n-----~pv~~~-----------~~v~it-sq~H~~~v~~~sv~ 321 (382)
T CHL00197 282 AKTFKL-----------------------KFGHRGLN-----HPSGLN-----------QQVEIT-SQNHGFAVNLESLA 321 (382)
T ss_pred CEEecc-----------------------CCCCCCCC-----EecCCC-----------CceEEe-ecchheEeeccccC
Confidence 987432 23555644 555321 123343 57899999887654
Q ss_pred ccccCCeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHh
Q 008567 490 VLEEAGLKFVGKD-ETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQ 549 (561)
Q Consensus 490 ~le~~gl~v~a~~-~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~ 549 (561)
. .++.+++.+ +|+. +|+++++++| ++|||||||+.++|++...||++|++.+.++
T Consensus 322 ~---~~~~vt~~~~nDgt-vegi~h~~~p-i~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 322 K---NKFYITHFNLNDGT-VAGISHSPKP-YFSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred C---CCcEEEEEECCCCC-EEEEEECCCC-cEEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 2 368888886 5776 9999999999 8999999999999998889999999988653
No 15
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.4e-38 Score=337.15 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=202.8
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCC-CccCCCCCh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNL-LSIAAPPNL 281 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l-~~~~~~~~~ 281 (561)
+.||.+|++.++|||+.+..+++|+++.+|..|++.++|++|.++||| +|+++||++|+|++++..-+. +........
T Consensus 121 d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~ 199 (415)
T PLN02771 121 DEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKMS 199 (415)
T ss_pred hhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHHH
Confidence 569999999999999999999999999999999999999999999999 999999999999988864221 100000001
Q ss_pred hHH----HHHHhhhcCC---------------------CCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEee
Q 008567 282 QAW----TKRAETYDNL---------------------KNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWI 336 (561)
Q Consensus 282 ~~w----~~l~~~~~~~---------------------~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i 336 (561)
..| .++++.+++. +...+|+++ ||+ .+ .+|++.|...|+.+.+ ++|-
T Consensus 200 ~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G-~K---~nIlr~L~~~G~~v~V---vP~~ 271 (415)
T PLN02771 200 RSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG-IK---HNILRRLASYGCKITV---VPST 271 (415)
T ss_pred HhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC-hH---HHHHHHHHHcCCeEEE---ECCC
Confidence 111 2344444321 012689999 895 43 8999999999998876 3333
Q ss_pred cCCCcccccccCCCcchhhHHHhc-cCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccc
Q 008567 337 AASDLEDESAKLTPKDHAAAWETL-RNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLG 414 (561)
Q Consensus 337 ~~~~l~~~~~~~d~~~~~~~~~~l-~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~g 414 (561)
.+. .+.+ .++|||||+||||++. ....++.++.+. .++|+||||||||+|+.++|+++.+
T Consensus 272 ~~~-----------------~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K 333 (415)
T PLN02771 272 WPA-----------------SEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTFK 333 (415)
T ss_pred CCH-----------------HHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEE
Confidence 221 1222 4799999999999985 345566677665 4899999999999999999998854
Q ss_pred cccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccC
Q 008567 415 LKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEA 494 (561)
Q Consensus 415 l~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~ 494 (561)
+ +++|.|.| |++..... ++..++ .++|+|.|+++.+ +.
T Consensus 334 ~-----------------------~~Gh~G~n-----~pV~~~~~---------~~v~it-sqnHg~aVd~~sL----p~ 371 (415)
T PLN02771 334 M-----------------------KFGHHGGN-----HPVRNNRT---------GRVEIS-AQNHNYAVDPASL----PE 371 (415)
T ss_pred C-----------------------CCCcccce-----EEEEECCC---------CCEEEE-ecCHHHhhccccC----CC
Confidence 2 45777876 78765332 123343 6899999987654 56
Q ss_pred CeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHH
Q 008567 495 GLKFVGKD-ETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALF 539 (561)
Q Consensus 495 gl~v~a~~-~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF 539 (561)
++++++.+ +|+. +|+++++++| ++|||||||..++|++..++|
T Consensus 372 ~~~vt~~nlnDgt-vegi~~~~~p-i~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 372 GVEVTHVNLNDGS-CAGLAFPALN-VMSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred ceEEEEEeCCCCc-EEEEEECCCC-EEEEEcCCCCCCCCCcChhhC
Confidence 89999987 5776 9999999999 899999999999999988876
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=310.84 Aligned_cols=274 Identities=19% Similarity=0.250 Sum_probs=221.8
Q ss_pred chHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCC
Q 008567 199 HSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAP 278 (561)
Q Consensus 199 ~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~ 278 (561)
...+.++|-+|++.+||+++.+.-.+||++.-||-.|+.+++|+++.|+||| +|++.|||||.|-+- +-++. ..
T Consensus 71 ~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~lReqGSmLgk---l~~e~--~~ 144 (1435)
T KOG0370|consen 71 GLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKKLREQGSMLGK---LSIEK--SP 144 (1435)
T ss_pred ccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHHHHhcCcceeE---EEecC--CC
Confidence 3556678999999999999999999999999999999999999999999999 999999999999443 33322 01
Q ss_pred CChhHH----HHHHhhhcC-------CCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc
Q 008567 279 PNLQAW----TKRAETYDN-------LKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK 347 (561)
Q Consensus 279 ~~~~~w----~~l~~~~~~-------~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~ 347 (561)
.. .| .+++..++. .++..+|+.+ |+ +++ .++++.|..+|+++.| ++|-.+-+
T Consensus 145 -~~-~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~ai-Dc-G~K---~N~IRcL~~RGa~vtV---vPw~~~i~------- 207 (1435)
T KOG0370|consen 145 -VL-FVDPNKRNLVSQVSTKEPKVYGDGKSLRILAI-DC-GLK---YNQIRCLVKRGAEVTV---VPWDYPIA------- 207 (1435)
T ss_pred -Cc-ccCCCcccchhhheeccceEEcCCcccEEEEc-cc-Cch---HHHHHHHHHhCceEEE---ecCCcccc-------
Confidence 10 11 235555443 2456899999 78 454 8999999999999988 67765421
Q ss_pred CCCcchhhHHHhccCCCeEEEcCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCC
Q 008567 348 LTPKDHAAAWETLRNAECVLVPGGFGDRG-VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSE 426 (561)
Q Consensus 348 ~d~~~~~~~~~~l~~~DGIilpGG~G~~~-~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~ 426 (561)
+ .++|||++++|||+|. ....+..++..++.++|+||||+|||+++.+.|+++.++
T Consensus 208 ----------~--~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~Km----------- 264 (1435)
T KOG0370|consen 208 ----------K--EEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKM----------- 264 (1435)
T ss_pred ----------c--cccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEe-----------
Confidence 1 2899999999999996 477888999999888999999999999999999887653
Q ss_pred CCCceeEecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe-CCC
Q 008567 427 TPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD-ETG 505 (561)
Q Consensus 427 ~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~-~dg 505 (561)
+++++|.| +||....+ ++..|+ ++||+|.|+++.+ +.|++....+ +|+
T Consensus 265 ------------KyGNRGhN-----iP~~~~~t---------Grc~IT-SQNHGYAVD~~tL----p~gWk~lFvN~NDg 313 (1435)
T KOG0370|consen 265 ------------KYGNRGHN-----IPCTCRAT---------GRCFIT-SQNHGYAVDPATL----PAGWKPLFVNANDG 313 (1435)
T ss_pred ------------eccccCCC-----ccceeccC---------ceEEEE-ecCCceeeccccc----cCCCchheeecccC
Confidence 56788887 67764333 366775 7899999998765 4677776666 566
Q ss_pred CeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhhH
Q 008567 506 KRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQLE 551 (561)
Q Consensus 506 ~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~~ 551 (561)
. -|++.|...| ++++|||||.+++|.+...+|..|++...+...
T Consensus 314 S-NEGI~Hss~P-~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~ks 357 (1435)
T KOG0370|consen 314 S-NEGIMHSSKP-FFSVQFHPEATPGPHDTEYLFDVFIELVKKSKS 357 (1435)
T ss_pred C-CceEecCCCC-ceeeecCCcCCCCCcchHHHHHHHHHHHHHHhc
Confidence 6 8999999999 799999999999999999999999999876543
No 17
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.97 E-value=1.4e-32 Score=293.53 Aligned_cols=302 Identities=22% Similarity=0.261 Sum_probs=236.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccc-----
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE----- 75 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~ye----- 75 (561)
||.|||. |+.|+.||+++++.+||+|.++||+|+|||. ||||. |.|||.||+|+ |+.|
T Consensus 1 ~~~iMv~-GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI----graQ~~QA~ 63 (486)
T COG1492 1 MKAIMVQ-GTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI----GRAQALQAL 63 (486)
T ss_pred CCccEEE-eccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE----ehhhhHHHH
Confidence 5789999 9999999999999999999999999999999 99999 99999999999 9999
Q ss_pred --------cccCCCCCCCCcccc-----cchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCE
Q 008567 76 --------RFLDVRLTKNNNITT-----GKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADV 142 (561)
Q Consensus 76 --------rf~~~~l~~~~~~ts-----Gk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~ 142 (561)
+|||+.|+|.++.+| ||.+.+ -+..+|+. +.-+-.+.++++.+.+++ ..+|+
T Consensus 64 Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~----~s~~~yy~---~~~~~l~~~v~~s~~~l~--------~~~d~ 128 (486)
T COG1492 64 AAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGR----KSAVEYYQ---EGKGLLWVAVKESLERLD--------REYDV 128 (486)
T ss_pred HcCCCCccccCCEEEeecCCCceEEEEecccccc----cChHHHHH---HHHHHHHHHHHHHHHHhh--------hcccE
Confidence 999999999999999 888877 67777541 223446899999999998 68999
Q ss_pred EEEecCCcc-------ccccccHHHHHHHhhc---cccCCCCEEEEEE--eeeeEeCCCCccccCCccchHHHHHhCCCc
Q 008567 143 CVIELGGTV-------GDIESMPFIEALRQLS---FSVGPDNFCLIHV--SLIPVLGVVGEQKTKPTQHSVRELRALGLT 210 (561)
Q Consensus 143 ~i~E~gGtv-------gdie~~~f~ea~~q~~---~~~~~~~~~~~~~--t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~ 210 (561)
|++|++||+ +||.||.|+|..+... .|++|+ ++|+|+ |+.. |. ..|+| +-.|
T Consensus 129 Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRG-GvfAsl~GT~~l-L~-~~~r~-----------~VkG-- 192 (486)
T COG1492 129 VVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRG-GVFASLYGTLAL-LP-ESDRA-----------LVKG-- 192 (486)
T ss_pred EEEecCCChhhcCcccccccceeeehhcCCCEEEEEeeccc-ceeeeeeehhee-cC-HhHhc-----------ceeE--
Confidence 999999999 9999999999998776 999999 999999 8777 65 68888 8888
Q ss_pred ccEEE--EeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHH
Q 008567 211 PHLLA--CRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRA 288 (561)
Q Consensus 211 pd~iI--~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~ 288 (561)
++| +|++..+.++..+++...+.++.-+|+++.+..-+ ..+..+ ++.. ..
T Consensus 193 --~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~~~~~~-------p~EDS~-------~~~~------------~~ 244 (486)
T COG1492 193 --FIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYLKDALR-------PAEDSL-------SLEQ------------PK 244 (486)
T ss_pred --EEEeeeCCCHHHHhhHHHHHHHhhCCeeEeeccccccccC-------cccccc-------Cchh------------hc
Confidence 777 89999999999999999999999998888662211 233332 1110 00
Q ss_pred hhhcCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEE
Q 008567 289 ETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLV 368 (561)
Q Consensus 289 ~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIil 368 (561)
. ..+...++||++ .+ .++.+..........-.+.+.|+.+. +.|.++|.|||
T Consensus 245 ~--~~~~~~i~Iav~-~l-------p~isNFtD~dpL~~~~~v~v~~v~~~------------------~~l~~~dlvIl 296 (486)
T COG1492 245 A--GGNKRAIRIAVI-RL-------PRISNFTDFDPLRAEPDVRVRFVKPG------------------SDLRDADLVIL 296 (486)
T ss_pred c--cCCCCceEEEEe-cC-------CCccccccchhhhcCCCeEEEEeccC------------------CCCCCCCEEEe
Confidence 0 111356899999 67 33444444333333223446677753 45778999999
Q ss_pred cCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 369 PGGFGDRG------VGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 369 pGG~G~~~------~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
||.-.... ..++-+.+....+++.|++|||-|||+|.-
T Consensus 297 PGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~ 340 (486)
T COG1492 297 PGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGR 340 (486)
T ss_pred CCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhh
Confidence 99654421 123444555555569999999999999954
No 18
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=229.04 Aligned_cols=189 Identities=30% Similarity=0.391 Sum_probs=131.5
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcC-C-CCCC
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPG-G-FGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpG-G-~G~~ 375 (561)
++|+|| ||+.-. -.|+.+||+++|+++.+. +|| +.+.++|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~GN--L~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSGN--LRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcch--HHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 895322 289999999999887652 233 6789999999999 4 3331
Q ss_pred --c--hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCC-----CCCceeEecCC-CCcccCCc
Q 008567 376 --G--VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSE-----TPNPVVIFMPE-GSRTHMGS 445 (561)
Q Consensus 376 --~--~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~-----~~~~vi~lm~~-~~~~~~G~ 445 (561)
. ..++++.++++.+.++|+||||||||||. + .|+|.... .++.|+++-++ .+.|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e-----------~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-E-----------RSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-h-----------cccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 24778899998889999999999999993 3 34554331 56778776554 57999999
Q ss_pred ccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCC-CeEEEEEeCCCCcEEEEcc
Q 008567 446 TMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETG-KRMEILELPSHPFYVGVQF 524 (561)
Q Consensus 446 ~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg-~~vE~ie~~~~p~~~GvQF 524 (561)
| .+.+.+++.++..+.. ..+ .|+.|+|.+.+..-+ .+++..+.| .+..+++ +.+++|+||
T Consensus 123 N------~l~~~~~~~l~~gi~~-~~~--~YFVHSY~~~~~~~~-------~v~~~~~YG~~f~AaV~---k~N~~g~QF 183 (204)
T COG0118 123 N------QVEFVRGHPLFKGIPD-GAY--FYFVHSYYVPPGNPE-------TVVATTDYGEPFPAAVA---KDNVFGTQF 183 (204)
T ss_pred c------eeeccCCChhhcCCCC-CCE--EEEEEEEeecCCCCc-------eEEEeccCCCeeEEEEE---eCCEEEEec
Confidence 9 4555556577777743 234 489999998751111 123333333 2233333 234999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHH
Q 008567 525 HPEFKSRPGRPSALFLGLILAA 546 (561)
Q Consensus 525 HPE~~~~p~~~~~LF~~Fi~aa 546 (561)
|||+++.. +..|+++|++.+
T Consensus 184 HPEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 184 HPEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred CcccchHH--HHHHHHHHHhhc
Confidence 99999887 579999998753
No 19
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.95 E-value=8.2e-27 Score=229.04 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=142.8
Q ss_pred HHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCC-------CCCC-----------c
Q 008567 315 SVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGG-------FGDR-----------G 376 (561)
Q Consensus 315 Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG-------~G~~-----------~ 376 (561)
+++++...+|.-..+ ++.....+ .+.+.+...|||++||| +|.. .
T Consensus 30 ~yv~ai~~aGg~pil---lP~~~d~~--------------~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~R 92 (243)
T COG2071 30 DYVDAIIKAGGIPIL---LPALEDPE--------------DARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPER 92 (243)
T ss_pred HHHHHHHHcCCceEE---ecCCCCHH--------------HHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccc
Confidence 578888888765433 33221110 13356788999999999 2221 0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 377 VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 377 ~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
....+.+||.|+++++|+||||+|||+|+++|||++. ++...... .+ .+..+....+..|++.+
T Consensus 93 D~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~--q~i~~~~~----------~~----~H~~~~~~~~~~H~V~i 156 (243)
T COG2071 93 DAFELALIRAALERGIPILGICRGLQLLNVALGGTLY--QDISEQPG----------HI----DHRQPNPVHIESHEVHI 156 (243)
T ss_pred cHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeee--hhhhcccc----------cc----cccCCCCcccceeEEEe
Confidence 1357889999999999999999999999999999973 33322111 00 11112222234699999
Q ss_pred cCCCcccccccCCc-eeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCC-C
Q 008567 457 QTPDCVTSKLYRNA-EYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPG-R 534 (561)
Q Consensus 457 ~~~~s~l~~iyg~~-~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~-~ 534 (561)
.++ |.+.+++++. ..|++.|+ +.+++| ..+|+++|.++||. ||+||+++++|++|||||||+..... .
T Consensus 157 ~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~ 226 (243)
T COG2071 157 EPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APGLVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPL 226 (243)
T ss_pred cCC-ccHHHhcCccceeecchHH-------HHHHHh-CCCcEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChH
Confidence 998 9999999854 56777765 889998 88999999999997 99999999999999999999998876 3
Q ss_pred chHHHHHHHHHHHHh
Q 008567 535 PSALFLGLILAATKQ 549 (561)
Q Consensus 535 ~~~LF~~Fi~aa~~~ 549 (561)
...||..|++++..+
T Consensus 227 ~~~LFe~F~~~~~~~ 241 (243)
T COG2071 227 SLALFEAFVNACKKH 241 (243)
T ss_pred HHHHHHHHHHHHHhh
Confidence 479999999998764
No 20
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.94 E-value=3.6e-26 Score=219.47 Aligned_cols=176 Identities=22% Similarity=0.381 Sum_probs=129.7
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-hh
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG-VG 378 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~-~~ 378 (561)
|+|+ ||+.- .++.++|+.+|+.+.+ +++-.. ++ .....++||||++||++++. ..
T Consensus 1 i~i~-d~g~~----~~~~~~l~~~G~~~~~---~~~~~~--~~--------------~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGVK----HNILRELLKRGCEVTV---VPYNTD--AE--------------EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCcH----HHHHHHHHHCCCeEEE---EECCCC--HH--------------HHhhcCCCEEEECCCCCChhHhH
Confidence 5778 78544 5899999999988755 222211 10 01235799999999998864 46
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcC
Q 008567 379 GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQT 458 (561)
Q Consensus 379 g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~ 458 (561)
...+.++++.++++|+||||+|||+|+.++|+++...+ .++.|.+ +++....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~-----------------------~~~~g~~-----~~v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMK-----------------------FGHRGSN-----HPVKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCC-----------------------CCCCCCc-----eeeEEcC
Confidence 67788999999999999999999999999999884311 1222332 4554432
Q ss_pred CCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchH
Q 008567 459 PDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD-ETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSA 537 (561)
Q Consensus 459 ~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~-~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~ 537 (561)
. .+.. ..+++|+|+++++.+ +.+++++|.+ +++. +|+++++++| ++|+|||||...++.+..+
T Consensus 109 ~---------~~~~-~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~-i~a~~~~~~~-i~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 109 T---------GRVY-ITSQNHGYAVDPDSL----PGGLEVTHVNLNDGT-VEGIRHKDLP-VFSVQFHPEASPGPHDTEY 172 (178)
T ss_pred C---------CCcE-EEEcCceEEEccccc----CCceEEEEEECCCCc-EEEEEECCCC-eEEEeeCCCCCCCCCCchH
Confidence 2 1112 236789999986544 5689999998 4665 9999999999 7999999999998878889
Q ss_pred HHHHHH
Q 008567 538 LFLGLI 543 (561)
Q Consensus 538 LF~~Fi 543 (561)
||.+|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
No 21
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.94 E-value=3.7e-26 Score=221.21 Aligned_cols=182 Identities=18% Similarity=0.229 Sum_probs=131.5
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~~~ 377 (561)
|.+|+.|+++. .++.+.|+..|+++.+ + ..++++. +.+ .++|||||+||||++..
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v---~---~~~~~~~--------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLV---K---RNDALTL--------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEE---E---eCCCCCH--------------HHHHhcCCCEEEEcCCCCChHH
Confidence 77887776665 6899999999987755 2 2222110 222 37999999999999853
Q ss_pred h-HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 G-GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 ~-g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
. .....++. .+.++|+||||+|||+|+.++|++|... ..++.|++ .++..
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~-----------------------~~~~~g~~-----~~v~~ 109 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRA-----------------------AKVMHGKT-----SPITH 109 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeC-----------------------CCcccCCc-----eEEEE
Confidence 2 33455554 4678999999999999999999998431 11223443 34554
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCch
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPS 536 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~ 536 (561)
... +++..+. .... ..++|+|.|++.. + +.+++++|.++++. ++++++.++| ++|+|||||+..+. .+.
T Consensus 110 ~~~-~l~~~~~-~~~~--v~~~H~~~v~~~~---l-p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~ 178 (187)
T PRK08007 110 NGE-GVFRGLA-NPLT--VTRYHSLVVEPDS---L-PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGH 178 (187)
T ss_pred CCC-CcccCCC-CCcE--EEEcchhEEccCC---C-CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chH
Confidence 433 5666553 2233 3677889886543 3 67899999999997 9999999988 89999999998775 568
Q ss_pred HHHHHHHH
Q 008567 537 ALFLGLIL 544 (561)
Q Consensus 537 ~LF~~Fi~ 544 (561)
.+|++|++
T Consensus 179 ~il~nFl~ 186 (187)
T PRK08007 179 QLLANFLH 186 (187)
T ss_pred HHHHHHhh
Confidence 99999986
No 22
>PLN02335 anthranilate synthase
Probab=99.94 E-value=1.3e-25 Score=223.15 Aligned_cols=196 Identities=17% Similarity=0.245 Sum_probs=135.4
Q ss_pred CCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHh--ccCCCeEEEcCCC
Q 008567 295 KNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET--LRNAECVLVPGGF 372 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~--l~~~DGIilpGG~ 372 (561)
++..+|.||+.|.+++ .++.++|+.+|+++.+ +++ +.++. +. ..++|||||+|||
T Consensus 16 ~~~~~ilviD~~dsft---~~i~~~L~~~g~~~~v---~~~---~~~~~--------------~~~~~~~~d~iVisgGP 72 (222)
T PLN02335 16 KQNGPIIVIDNYDSFT---YNLCQYMGELGCHFEV---YRN---DELTV--------------EELKRKNPRGVLISPGP 72 (222)
T ss_pred CccCcEEEEECCCCHH---HHHHHHHHHCCCcEEE---EEC---CCCCH--------------HHHHhcCCCEEEEcCCC
Confidence 3457999996555554 6899999999988766 222 21110 21 2468999999999
Q ss_pred CCCchhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCc
Q 008567 373 GDRGVGG-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGS 451 (561)
Q Consensus 373 G~~~~~g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~ 451 (561)
|++...+ ..+.++ ....++|+||||||||+|+.++|+++...+ . ....|++
T Consensus 73 g~p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~------~----------------~~~~G~~----- 124 (222)
T PLN02335 73 GTPQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSP------F----------------GVMHGKS----- 124 (222)
T ss_pred CChhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCC------C----------------ccccCce-----
Confidence 9985333 233333 334579999999999999999999874210 0 0112322
Q ss_pred eeEEEcCC--CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCC
Q 008567 452 RRTLFQTP--DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFK 529 (561)
Q Consensus 452 ~~v~l~~~--~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~ 529 (561)
.++..... ++++..+.. . ...+++|+|.++++.+. +.+++++|.++++. +++++++++|+++|+|||||+.
T Consensus 125 ~~v~~~~~~~~~Lf~~l~~-~--~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~ 197 (222)
T PLN02335 125 SPVHYDEKGEEGLFSGLPN-P--FTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESI 197 (222)
T ss_pred eeeEECCCCCChhhhCCCC-C--CEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCC
Confidence 34443321 256665532 2 23478899999765432 23489999998887 9999999999899999999999
Q ss_pred CCCCCchHHHHHHHHHHHHh
Q 008567 530 SRPGRPSALFLGLILAATKQ 549 (561)
Q Consensus 530 ~~p~~~~~LF~~Fi~aa~~~ 549 (561)
.++ .+..||++|++.+.++
T Consensus 198 ~~~-~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 198 ITT-EGKTIVRNFIKIIEKK 216 (222)
T ss_pred CCh-hHHHHHHHHHHHHHhh
Confidence 775 5789999999987654
No 23
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.94 E-value=1.9e-25 Score=216.29 Aligned_cols=186 Identities=20% Similarity=0.247 Sum_probs=128.1
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch-h
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV-G 378 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~-~ 378 (561)
|.|++.+.++. .++.++|+.+|+++.+ ++|...+. +..+. .++||||++||+|++.. .
T Consensus 2 iliid~~d~f~---~~i~~~l~~~g~~~~v---~~~~~~~~--------------~~~~~-~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYDSFT---YNLVQYLGELGAEVVV---YRNDEITL--------------EEIEA-LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEE---EECCCCCH--------------HHHHh-CCCCEEEEcCCCCChHHcc
Confidence 77885443333 5799999999998766 33322110 00122 34899999999999743 2
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcC
Q 008567 379 GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQT 458 (561)
Q Consensus 379 g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~ 458 (561)
.....++. .+.++|+||||+|||+|+.++|++|...+ .++.|++ +++. ..
T Consensus 61 ~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~-----------------------~~~~g~~-----~~v~-~~ 110 (189)
T PRK05670 61 ISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAK-----------------------EIMHGKT-----SPIE-HD 110 (189)
T ss_pred hHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecC-----------------------CcccCce-----eEEE-eC
Confidence 33445554 45789999999999999999999874310 1122433 3444 23
Q ss_pred CCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHH
Q 008567 459 PDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSAL 538 (561)
Q Consensus 459 ~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~L 538 (561)
+++++..+.. . ...+|+|+|.|++.. + +.+++++|.++++. +|++++.++| ++|+|||||+..++ ++.+|
T Consensus 111 ~~~l~~~~~~-~--~~v~~~H~~~v~~~~---l-p~~~~~la~s~~~~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~i 180 (189)
T PRK05670 111 GSGIFAGLPN-P--FTVTRYHSLVVDRES---L-PDCLEVTAWTDDGE-IMGVRHKELP-IYGVQFHPESILTE-HGHKL 180 (189)
T ss_pred CCchhccCCC-C--cEEEcchhheecccc---C-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeeCCCcCCCc-chHHH
Confidence 3344444432 2 334788999886422 3 67899999998886 9999999999 89999999998664 67899
Q ss_pred HHHHHHHH
Q 008567 539 FLGLILAA 546 (561)
Q Consensus 539 F~~Fi~aa 546 (561)
|++|++.+
T Consensus 181 ~~~F~~~~ 188 (189)
T PRK05670 181 LENFLELA 188 (189)
T ss_pred HHHHHHhh
Confidence 99999875
No 24
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.93 E-value=7.8e-26 Score=218.41 Aligned_cols=190 Identities=28% Similarity=0.410 Sum_probs=137.9
Q ss_pred EEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-hhHH
Q 008567 302 MVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG-VGGM 380 (561)
Q Consensus 302 vvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~-~~g~ 380 (561)
|++.|.+.. .++.++|++.|+.+.+ .|++.+. ...++.+.++|||||+||++++. ....
T Consensus 2 viD~~~~~~---~~l~~~l~~~~~~~~v----~~~~~~~-------------~~~~~~~~~~d~iii~Gg~~~~~d~~~~ 61 (192)
T PF00117_consen 2 VIDNGDSFT---HSLVRALRELGIDVEV----VRVDSDF-------------EEPLEDLDDYDGIIISGGPGSPYDIEGL 61 (192)
T ss_dssp EEESSHTTH---HHHHHHHHHTTEEEEE----EETTGGH-------------HHHHHHTTTSSEEEEECESSSTTSHHHH
T ss_pred EEeCCHHHH---HHHHHHHHHCCCeEEE----EECCCch-------------hhhhhhhcCCCEEEECCcCCcccccccc
Confidence 564343343 6789999999976544 4444321 01112478999999999999987 7899
Q ss_pred HHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCC
Q 008567 381 ILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPD 460 (561)
Q Consensus 381 i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~ 460 (561)
..++++++++++|+||||+|||+|+.++|++|...+ ..++.|+++. +...+.+
T Consensus 62 ~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~-----~~~~~~~ 114 (192)
T PF00117_consen 62 IELIREARERKIPILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIP-----ISETPED 114 (192)
T ss_dssp HHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEE-----EEEEEEH
T ss_pred ccccccccccceEEEEEeehhhhhHHhcCCcccccc----------------------cccccccccc-----ccccccc
Confidence 999999999999999999999999999999884210 1355677643 3322112
Q ss_pred cccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHH
Q 008567 461 CVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFL 540 (561)
Q Consensus 461 s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~ 540 (561)
.++.... ..+..+++|+|.|++. .+.+.+++++|.+.++..++++.+.++| ++|+|||||+++++.+...|+.
T Consensus 115 ~~~~~~~---~~~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~n 187 (192)
T PF00117_consen 115 PLFYGLP---ESFKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKN 187 (192)
T ss_dssp GGGTTST---SEEEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHH
T ss_pred ccccccc---cccccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhh
Confidence 4444442 3556789999999865 2227899999999776339999999999 8999999999999986666666
Q ss_pred HHHHH
Q 008567 541 GLILA 545 (561)
Q Consensus 541 ~Fi~a 545 (561)
.|+++
T Consensus 188 f~~~~ 192 (192)
T PF00117_consen 188 FFLKA 192 (192)
T ss_dssp HHHHH
T ss_pred eeEeC
Confidence 56654
No 25
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=4.4e-25 Score=210.72 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=139.3
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
.+|.+|+.|+++. .++.+.|...|+++.|. .+. +++. ..-...++|+|+|++|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~-----rnd-~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV-----RND-DISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE-----ECC-ccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 4799999897776 78999999999777662 111 1111 0012347899999999999976
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 GG-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 ~g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
.+ ..++|+++ ..++|+||||||||.|+.+||++|...+ .+..|.+ ....
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~-----------------------~~~HGK~------s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAK-----------------------EPMHGKT------SIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecC-----------------------CCcCCee------eeee
Confidence 55 56777776 6789999999999999999999984311 1222333 2222
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCch
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPS 536 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~ 536 (561)
..++.+|..++. ...+. |+ |+..++++.+ +..++++|++.|+..+++++++++| ++|+|||||.--++. ++
T Consensus 111 h~g~~iF~glp~-~f~v~-RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~p-i~gvQFHPESilT~~-G~ 181 (191)
T COG0512 111 HDGSGLFAGLPN-PFTVT-RY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLP-IYGVQFHPESILTEY-GH 181 (191)
T ss_pred cCCcccccCCCC-CCEEE-ee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCC-EEEEecCCccccccc-hH
Confidence 334477778863 44554 44 7888887655 5689999999877569999999999 899999999998885 58
Q ss_pred HHHHHHHHH
Q 008567 537 ALFLGLILA 545 (561)
Q Consensus 537 ~LF~~Fi~a 545 (561)
.++++|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999975
No 26
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.93 E-value=3.9e-25 Score=214.28 Aligned_cols=183 Identities=18% Similarity=0.264 Sum_probs=131.1
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~~~ 377 (561)
|.+|+.|+++. .++.+.|+..|+.+.+ +++-.. ++ +.+ .++|||||+||||++..
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~v~v---~~~~~~-~~----------------~~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMIDNYDSFT---YNLVQYFCELGAEVVV---KRNDSL-TL----------------QEIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEEECCcCHH---HHHHHHHHHcCCceEE---EECCCC-CH----------------HHHHhcCCCEEEEcCCCCChhh
Confidence 67886665444 5799999999988755 222111 11 222 26899999999999753
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 -GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 -~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
....+.++++ ..++|+||||+|||+|+.++|++|...+ ....|+. +++..
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~-----------------------~~~~g~~-----~~v~~ 109 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRAN-----------------------TVMHGKT-----SEIEH 109 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCC-----------------------Cccccce-----EEEEE
Confidence 2336777777 6789999999999999999999884210 1112322 45665
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCch
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPS 536 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~ 536 (561)
... +++..+++ . +...+.|+|.++++.+ +.+++++|.+.++..+++++++++| ++|+|||||...++ .+.
T Consensus 110 ~~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~-i~gvQfHPE~~~t~-~G~ 179 (188)
T TIGR00566 110 NGA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLP-LEGVQFHPESILSE-QGH 179 (188)
T ss_pred CCC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCC-EEEEEeCCCccCCc-ccH
Confidence 444 66666653 3 3346789998865443 5689999998764249999999999 89999999998775 578
Q ss_pred HHHHHHHH
Q 008567 537 ALFLGLIL 544 (561)
Q Consensus 537 ~LF~~Fi~ 544 (561)
.||++|++
T Consensus 180 ~il~nfl~ 187 (188)
T TIGR00566 180 QLLANFLH 187 (188)
T ss_pred HHHHHHHh
Confidence 99999985
No 27
>CHL00101 trpG anthranilate synthase component 2
Probab=99.93 E-value=5.8e-25 Score=213.35 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=128.6
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHh--ccCCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET--LRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~--l~~~DGIilpGG~G~~~~ 377 (561)
|.||+.++++. .++.+.|+..|+++.+ +..+..+ .+. ..++||||++||+|++..
T Consensus 2 iliid~~dsft---~~l~~~l~~~g~~~~v------~~~~~~~--------------~~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYDSFT---YNLVQSLGELNSDVLV------CRNDEID--------------LSKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCCchH---HHHHHHHHhcCCCEEE------EECCCCC--------------HHHHhhCCCCEEEECCCCCChHH
Confidence 67885444443 5799999999987755 2222111 022 257999999999998754
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEc
Q 008567 378 GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQ 457 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~ 457 (561)
......+..+.+.++|+||||+|||+|+.++|++|...+ .+..|++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~-----------------------~~~~g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAP-----------------------KPMHGKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECC-----------------------CcccCce-----eeEe-e
Confidence 333444444567899999999999999999999984311 1122433 1222 2
Q ss_pred CCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchH
Q 008567 458 TPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSA 537 (561)
Q Consensus 458 ~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~ 537 (561)
.+++++..+.. ....+++|+|.|++.. + +.++.++|.++++. +++++++++||++|+|||||+..++ .+..
T Consensus 110 ~~~~l~~~~~~---~~~v~~~H~~~v~~~~---l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~ 180 (190)
T CHL00101 110 NHDDLFQGLPN---PFTATRYHSLIIDPLN---L-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQ 180 (190)
T ss_pred CCcHhhccCCC---ceEEEcchhheeeccc---C-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHH
Confidence 33245544432 2345788999986432 3 56899999998887 9999999999899999999997555 4689
Q ss_pred HHHHHHHH
Q 008567 538 LFLGLILA 545 (561)
Q Consensus 538 LF~~Fi~a 545 (561)
||++|++.
T Consensus 181 l~~nf~~~ 188 (190)
T CHL00101 181 ILRNFLSL 188 (190)
T ss_pred HHHHHHhh
Confidence 99999874
No 28
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.93 E-value=9.5e-25 Score=212.79 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=130.9
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHh--ccCCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET--LRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~--l~~~DGIilpGG~G~~~~ 377 (561)
|.+|+.|+++. .++.+.|+..|+++.+ +..++.. .+. ..++|||||+||||++..
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~v~v------~~~~~~~--------------~~~~~~~~~d~iIlsgGP~~p~~ 58 (195)
T PRK07649 2 ILMIDNYDSFT---FNLVQFLGELGQELVV------KRNDEVT--------------ISDIENMKPDFLMISPGPCSPNE 58 (195)
T ss_pred EEEEeCCCccH---HHHHHHHHHCCCcEEE------EeCCCCC--------------HHHHhhCCCCEEEECCCCCChHh
Confidence 67886665554 5799999999987765 2222110 011 247999999999999743
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 GG-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 ~g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
.+ ....++. .+.++|+||||+|||+|+.++|++|...+ ..+.|++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~-----------------------~~~~G~~-----~~i~~ 109 (195)
T PRK07649 59 AGISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAE-----------------------RLMHGKT-----SLMHH 109 (195)
T ss_pred CCCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCC-----------------------CcccCCe-----EEEEE
Confidence 22 3344443 35789999999999999999999984311 1223443 23333
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCch
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPS 536 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~ 536 (561)
.+++++..+.. ... ..++|++.+.++. + +.+++++|.++++. ++++++.++| +||+|||||...++ .+.
T Consensus 110 -~~~~lf~~~~~-~~~--v~~~H~~~v~~~~---l-p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~ 178 (195)
T PRK07649 110 -DGKTIFSDIPN-PFT--ATRYHSLIVKKET---L-PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGK 178 (195)
T ss_pred -CCChhhcCCCC-CCE--EEEechheEeccc---C-CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHH
Confidence 33366666642 333 4678888875332 3 67899999998887 9999999999 89999999988765 578
Q ss_pred HHHHHHHHHHHHh
Q 008567 537 ALFLGLILAATKQ 549 (561)
Q Consensus 537 ~LF~~Fi~aa~~~ 549 (561)
.+|++|++.....
T Consensus 179 ~il~nfl~~~~~~ 191 (195)
T PRK07649 179 ELLQNFIRKYSPS 191 (195)
T ss_pred HHHHHHHHHhHhh
Confidence 9999999876543
No 29
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.93 E-value=1.3e-24 Score=210.86 Aligned_cols=186 Identities=16% Similarity=0.221 Sum_probs=132.5
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
+||.||+.|++.. .++.++|+.+|+++.+. ...+.+ .+.+.++|||||+||+|.+..
T Consensus 2 ~~iliid~~dsf~---~~i~~~l~~~g~~~~v~------~~~~~~--------------~~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT---FNLVDLIRKLGVPMQVV------NVEDLD--------------LDEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH---HHHHHHHHHcCCcEEEE------ECCccC--------------hhHhccCCEEEECCCCCChHH
Confidence 5899997665554 56999999999877651 211110 145778999999999997643
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 -GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 -~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
....+.++. .+.++|+||||||||+|+.++|++|...+ +..|.++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~----------------------~~~~g~~------~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLN----------------------NVRHGQQ------RPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecC----------------------CCccCce------EEEEE
Confidence 334555654 56789999999999999999999884310 1122222 34555
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCch
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPS 536 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~ 536 (561)
.+++.++..+. . .+..+++|+|.+.+..+ +.++.+++.++++. ++++++.++| ++|+|||||+.+++. +.
T Consensus 110 ~~~~~l~~~~~-~--~~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~~-g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-E--EFNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISEF-GE 179 (190)
T ss_pred CCCChhhhcCC-C--ceEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCcc-hH
Confidence 45545555553 2 23347889999875432 45788888887775 9999999999 899999999987774 57
Q ss_pred HHHHHHHHH
Q 008567 537 ALFLGLILA 545 (561)
Q Consensus 537 ~LF~~Fi~a 545 (561)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 899999864
No 30
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.93 E-value=1.6e-24 Score=219.35 Aligned_cols=217 Identities=21% Similarity=0.223 Sum_probs=140.0
Q ss_pred ceEEEEEeccCC---CcccH--HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCC
Q 008567 297 SVRIAMVGKYVG---LADSY--LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGG 371 (561)
Q Consensus 297 ~~~Iavvgky~~---~~DaY--~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG 371 (561)
++.|||.+.... ....+ ..+++++..+|..... ++....++ ....+.++.+||||++||
T Consensus 7 ~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~---lp~~~~~~-------------~~~~~~l~~~DGlil~GG 70 (254)
T PRK11366 7 NPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIA---LPHALAEP-------------SLLEQLLPKLDGIYLPGS 70 (254)
T ss_pred CCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEE---ecCCCCCH-------------HHHHHHHHhCCEEEeCCC
Confidence 467999852211 01111 3478999999885422 22211110 011244677999999998
Q ss_pred CCCC-----------ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEe
Q 008567 372 FGDR-----------GV------GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIF 434 (561)
Q Consensus 372 ~G~~-----------~~------~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~l 434 (561)
+.+- .. ...+.+++++.++++|+||||+|||+|++++|+++. ++.. +. +. ...+-
T Consensus 71 ~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~--~~~~--~~-~~---~~~h~ 142 (254)
T PRK11366 71 PSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLH--RKLC--EQ-PE---LLEHR 142 (254)
T ss_pred CCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEe--eccc--cc-cc---ccccc
Confidence 5421 11 345788999999999999999999999999999984 2221 00 00 00000
Q ss_pred cCCCCcccCCcccccCceeEEEcCCCcccccccCC--ceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEE
Q 008567 435 MPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRN--AEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILE 512 (561)
Q Consensus 435 m~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~--~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie 512 (561)
........+ ...+.|.+.+.++ +++..+++. ...++.+|+ +.+..+ +.|++++|.++||. +|++|
T Consensus 143 -~~~~~~~~~--~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H~-------q~V~~l-~~gl~v~A~s~dg~-ieAie 209 (254)
T PRK11366 143 -EDPELPVEQ--QYAPSHEVQVEEG-GLLSALLPECSNFWVNSLHG-------QGAKVV-SPRLRVEARSPDGL-VEAVS 209 (254)
T ss_pred -cCCcccccc--ccCCceEEEECCC-CcHHHhcCCCceEEeehHHH-------HHHhhc-ccceEEEEEcCCCc-EEEEE
Confidence 000000000 0112478888777 888888732 223444443 566677 88999999999997 99999
Q ss_pred eCCCCcEEEEcccCCCCCCCCCc-hHHHHHHHHHHHHhh
Q 008567 513 LPSHPFYVGVQFHPEFKSRPGRP-SALFLGLILAATKQL 550 (561)
Q Consensus 513 ~~~~p~~~GvQFHPE~~~~p~~~-~~LF~~Fi~aa~~~~ 550 (561)
++++||++|||||||+...+... ..||.+|+++|.++.
T Consensus 210 ~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~ 248 (254)
T PRK11366 210 VINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHI 248 (254)
T ss_pred eCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999889999999998775432 689999999987643
No 31
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.93 E-value=1.2e-24 Score=210.53 Aligned_cols=182 Identities=20% Similarity=0.271 Sum_probs=131.0
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc--CCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR--NAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~--~~DGIilpGG~G~~~~ 377 (561)
|+|| ||+... -.++.++|+..|+++.+ ++|..+. +.+. ++||||||||+++...
T Consensus 1 i~ii-D~g~~~--~~~l~~~l~~~g~~~~~---~~~~~~~------------------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQY--TQLIARRLRELGVYSEL---VPNTTPL------------------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCchH--HHHHHHHHHHcCCEEEE---EeCCCCH------------------HHHhhcCCCEEEECCCCCCcCc
Confidence 5788 664321 15788999999987765 3332211 2333 3569999999987655
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEc
Q 008567 378 GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQ 457 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~ 457 (561)
......++.+.+.++|+||||+|||+|+.++|++|... ..+++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~-----------------------~~~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRA-----------------------EKREYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecC-----------------------CCcccee------EEEEEe
Confidence 45567788888999999999999999999999887421 1123343 466665
Q ss_pred CCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchH
Q 008567 458 TPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSA 537 (561)
Q Consensus 458 ~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~ 537 (561)
+.+.++..+. . .+..++.|+|.+. .+ +.+++++|.++++. ++++++++.| ++|+|||||++.++ .+..
T Consensus 108 ~~~~l~~~~~-~--~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP-D--ESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKP-IYGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC-C--CcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCC-EEEEeeCCccCCCh-hhHH
Confidence 5544444442 2 3334678888763 34 67899999988876 9999999888 89999999998875 4689
Q ss_pred HHHHHHHHH
Q 008567 538 LFLGLILAA 546 (561)
Q Consensus 538 LF~~Fi~aa 546 (561)
||++|+.++
T Consensus 176 i~~~f~~~~ 184 (188)
T TIGR00888 176 LLENFVYDV 184 (188)
T ss_pred HHHHHHHHh
Confidence 999999854
No 32
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.92 E-value=2.8e-24 Score=207.04 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=127.8
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhH
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGG 379 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g 379 (561)
|.|++.|+... ..+.++|+.+|+++.+ ++|-...+ ....+.++||||++||++++....
T Consensus 1 il~~~~~~~~~---~~~~~~l~~~G~~~~~---~~~~~~~~---------------~~~~~~~~dgvil~gG~~~~~~~~ 59 (184)
T cd01743 1 ILLIDNYDSFT---YNLVQYLRELGAEVVV---VRNDEITL---------------EELELLNPDAIVISPGPGHPEDAG 59 (184)
T ss_pred CEEEeCCCccH---HHHHHHHHHcCCceEE---EeCCCCCH---------------HHHhhcCCCEEEECCCCCCcccch
Confidence 34564443332 4588899999988765 33322111 012457899999999999875444
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCC
Q 008567 380 MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTP 459 (561)
Q Consensus 380 ~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~ 459 (561)
....++.+.++++|+||||+|||+|+.++|++|... ..+..|++ +++.+.++
T Consensus 60 ~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~-----------------------~~~~~g~~-----~~v~~~~~ 111 (184)
T cd01743 60 ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA-----------------------PEPMHGKT-----SEIHHDGS 111 (184)
T ss_pred hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC-----------------------CCCCcCce-----eEEEECCC
Confidence 555566666789999999999999999999987321 11122333 45555543
Q ss_pred CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHH
Q 008567 460 DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALF 539 (561)
Q Consensus 460 ~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF 539 (561)
+++..+.. .+..+++|+|.|+.... +.+++++|.++++. ++++++.++| ++|+|||||+.+.+. +..||
T Consensus 112 -~~~~~~~~---~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~~-v~a~~~~~~~-i~gvQfHPE~~~~~~-g~~l~ 180 (184)
T cd01743 112 -GLFKGLPQ---PFTVGRYHSLVVDPDPL----PDLLEVTASTEDGV-IMALRHRDLP-IYGVQFHPESILTEY-GLRLL 180 (184)
T ss_pred -ccccCCCC---CcEEEeCcEEEEecCCC----CceEEEEEeCCCCe-EEEEEeCCCC-EEEEeeCCCcCCCcc-hHHHH
Confidence 66655532 23457889999864211 22488899988886 9999999999 899999999988875 78999
Q ss_pred HHHH
Q 008567 540 LGLI 543 (561)
Q Consensus 540 ~~Fi 543 (561)
++|+
T Consensus 181 ~~f~ 184 (184)
T cd01743 181 ENFL 184 (184)
T ss_pred HhhC
Confidence 9994
No 33
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=4.8e-24 Score=206.89 Aligned_cols=183 Identities=16% Similarity=0.272 Sum_probs=122.1
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCCch
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDRGV 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~~~ 377 (561)
|.+|+.|+++. .++.+.|+..|+++.+ +..+... .+.+ .++|+||++|||+++..
T Consensus 2 il~id~~dsf~---~nl~~~l~~~~~~~~v------~~~~~~~--------------~~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYDSFT---YNLYQYFCELGTEVMV------KRNDELQ--------------LTDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEE------EeCCCCC--------------HHHHHhcCCCeEEEcCCCCChHh
Confidence 67886664443 5799999999988765 2222111 0222 37899999999999743
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEE
Q 008567 378 GG-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLF 456 (561)
Q Consensus 378 ~g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l 456 (561)
.+ ....++. .+.++|+||||+|||+|+.++|++|.... . ...|++ .+..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~----------------------~-~~~G~~------~~~~ 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRAR----------------------Q-VMHGKT------SAIC 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCC----------------------c-ceecce------EEEE
Confidence 22 3344443 46789999999999999999999884310 0 112433 2333
Q ss_pred cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCC-C--eEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 457 QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETG-K--RMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 457 ~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg-~--~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
...++++..+. .... .+++|+|.+++.. + +.++.++|.++++ . .++++++++.| ++|+|||||+.+++
T Consensus 109 ~~~~~lf~~l~-~~~~--v~~~Hs~~v~~~~---l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~- 179 (191)
T PRK06774 109 HSGQGVFRGLN-QPLT--VTRYHSLVIAADS---L-PGCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSE- 179 (191)
T ss_pred ecCchhhcCCC-CCcE--EEEeCcceeeccC---C-CCCeEEEEEeCCCCCcceEEEEEeCCCC-EEEEEECCCcCCCc-
Confidence 23335555553 2233 4678888886432 3 5689999988743 2 35677777777 89999999997776
Q ss_pred CchHHHHHHHH
Q 008567 534 RPSALFLGLIL 544 (561)
Q Consensus 534 ~~~~LF~~Fi~ 544 (561)
.+..||++|++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 56899999985
No 34
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=1.3e-23 Score=207.70 Aligned_cols=190 Identities=22% Similarity=0.281 Sum_probs=133.3
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-h
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG-V 377 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~-~ 377 (561)
+|.+++.+..+. .++.+.|+..|+++.+ +++-.+ .+ .+..+.+.++|||||+||++++. .
T Consensus 2 ~ilv~d~~~~~~---~~~~~~l~~~G~~~~~---~~~~~~-~~------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYDSFV---FNLVQYLGQLGVEAEV---WRNDDP-RL------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCCcHH---HHHHHHHHHcCCcEEE---EECCCc-CH------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 678885553332 3578889999988765 222111 11 01113356899999999999874 3
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEc
Q 008567 378 GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQ 457 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~ 457 (561)
...+..++++.++++|+||||+|||+|+.++|++|.+. ..+..|.+ +.+.+.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~-----------------------~~~~~g~~-----~~v~~~ 114 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRA-----------------------PELLHGKT-----SSVHHT 114 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC-----------------------CCCccCce-----eEEEEC
Confidence 44568899999999999999999999999999998431 01112332 345554
Q ss_pred CCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchH
Q 008567 458 TPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSA 537 (561)
Q Consensus 458 ~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~ 537 (561)
.. +++..+.. .+..+++|+|.+.+..+ +.++.++|.++++. +++++++++| ++|+|||||...+. .+..
T Consensus 115 ~~-~~~~~~~~---~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g~~ 183 (214)
T PRK07765 115 GV-GVLAGLPD---PFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GGHR 183 (214)
T ss_pred CC-ccccCCCC---ccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-chHH
Confidence 44 55555532 23347789998865433 66899999999887 9999999999 89999999987544 3467
Q ss_pred HHHHHHHHH
Q 008567 538 LFLGLILAA 546 (561)
Q Consensus 538 LF~~Fi~aa 546 (561)
++.+|+..|
T Consensus 184 ~l~~f~~~~ 192 (214)
T PRK07765 184 MLANWLTVC 192 (214)
T ss_pred HHHHHHHHh
Confidence 888888765
No 35
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=1.7e-23 Score=203.59 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=126.9
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchh-
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVG- 378 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~- 378 (561)
|.+|+.|+++. .++.+.|+.+|+.+.+ +++-.. ++++ -...++|+|+++||++++...
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~---~~~~~~-~~~~--------------~~~~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKV---VRNDEI-DIDG--------------IEALNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEE---EECCCC-CHHH--------------HhhCCCCEEEEeCCCCChHHCc
Confidence 78887776554 5799999999988765 222111 1100 012358999999999987432
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcC
Q 008567 379 GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQT 458 (561)
Q Consensus 379 g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~ 458 (561)
.....++. .+.++|+||||+|||+|+.++|++|...+ .+..|++ +++...
T Consensus 61 ~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~-----------------------~~~~G~~-----~~~~~~- 110 (193)
T PRK08857 61 ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRAR-----------------------QVMHGKT-----SPIRHT- 110 (193)
T ss_pred chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCC-----------------------CceeCce-----EEEEEC-
Confidence 23455554 56799999999999999999999884310 1122443 233333
Q ss_pred CCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeC--CCC--eEEEEEeCCCCcEEEEcccCCCCCCCCC
Q 008567 459 PDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDE--TGK--RMEILELPSHPFYVGVQFHPEFKSRPGR 534 (561)
Q Consensus 459 ~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~--dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p~~ 534 (561)
+++++..+. .. +...++|++.+.+. .+ +.+++++|.++ |+. .+++++++++| ++|+|||||+..++.
T Consensus 111 ~~~l~~~~~-~~--~~v~~~H~~~v~~~---~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~p-i~gvQfHPE~~~t~~- 181 (193)
T PRK08857 111 GRSVFKGLN-NP--LTVTRYHSLVVKND---TL-PECFELTAWTELEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQ- 181 (193)
T ss_pred CCcccccCC-Cc--cEEEEccEEEEEcC---CC-CCCeEEEEEecCcCCCcceEEEEEeCCCC-EEEEeeCCCcCCCcc-
Confidence 325555553 22 33467788888533 23 67899999886 432 58999999998 899999999997664
Q ss_pred chHHHHHHHHH
Q 008567 535 PSALFLGLILA 545 (561)
Q Consensus 535 ~~~LF~~Fi~a 545 (561)
+..||++|++.
T Consensus 182 g~~i~~nFl~~ 192 (193)
T PRK08857 182 GHQLLANFLAR 192 (193)
T ss_pred hHHHHHHHHhh
Confidence 79999999864
No 36
>PRK00758 GMP synthase subunit A; Validated
Probab=99.91 E-value=1.3e-23 Score=202.50 Aligned_cols=180 Identities=21% Similarity=0.303 Sum_probs=124.1
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCC-CeEEEcCCCCCCchh
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNA-ECVLVPGGFGDRGVG 378 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~-DGIilpGG~G~~~~~ 378 (561)
|+|++.+.+.. .++.++|+.+|+++.+ +..+. + .+.+.++ ||||+|||+......
T Consensus 2 i~iid~~~~~~---~~i~~~l~~~g~~~~~------~~~~~--------~-------~~~l~~~~dgivi~Gg~~~~~~~ 57 (184)
T PRK00758 2 IVVVDNGGQYN---HLIHRTLRYLGVDAKI------IPNTT--------P-------VEEIKAFEDGLILSGGPDIERAG 57 (184)
T ss_pred EEEEECCCchH---HHHHHHHHHcCCcEEE------EECCC--------C-------HHHHhhcCCEEEECCCCChhhcc
Confidence 78884333332 5789999999987644 22211 0 1456667 999999998322111
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcC
Q 008567 379 GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQT 458 (561)
Q Consensus 379 g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~ 458 (561)
...+.+++.++|+||||+|||+|+.++|++|... ..++. |..++.+.+
T Consensus 58 ---~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~-----------------------~~~~~------g~~~i~~~~ 105 (184)
T PRK00758 58 ---NCPEYLKELDVPILGICLGHQLIAKAFGGEVGRG-----------------------EYGEY------ALVEVEILD 105 (184)
T ss_pred ---ccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecC-----------------------CCcee------eeEEEEEcC
Confidence 1222333678999999999999999999987321 01122 334666655
Q ss_pred CCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHH
Q 008567 459 PDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSAL 538 (561)
Q Consensus 459 ~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~L 538 (561)
.++++..+. . .+..++.|+|.+. .+ +.+++++|.++++. +++++++++| ++|+|||||+..++ ....|
T Consensus 106 ~~~l~~~~~-~--~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~l 173 (184)
T PRK00758 106 EDDILKGLP-P--EIRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEEI 173 (184)
T ss_pred CChhhhCCC-C--CcEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHHH
Confidence 546665543 2 2334677887663 34 67899999999997 9999999888 89999999998774 56899
Q ss_pred HHHHHHHHH
Q 008567 539 FLGLILAAT 547 (561)
Q Consensus 539 F~~Fi~aa~ 547 (561)
|++|++.+.
T Consensus 174 ~~~f~~~~~ 182 (184)
T PRK00758 174 FKNFLEICG 182 (184)
T ss_pred HHHHHHHHc
Confidence 999997654
No 37
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.91 E-value=1e-23 Score=202.16 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=125.7
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhH
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGG 379 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g 379 (561)
|+++ ||+.... .++.++|+.+|+.+.+ ++|-.+.+ ...+.++||||+|||+++.....
T Consensus 1 i~~i-D~g~~~~--~~~~~~l~~~G~~~~~---~~~~~~~~----------------~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQYT--HLIARRVRELGVYSEI---LPNTTPLE----------------EIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCchH--HHHHHHHHhcCceEEE---ecCCCChh----------------hhcccCCCEEEECCCcccccccc
Confidence 5678 6643211 5689999999987655 23221110 12567899999999987653222
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCC
Q 008567 380 MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTP 459 (561)
Q Consensus 380 ~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~ 459 (561)
.....++..+.++|+||||+|||+|+.++|+++... ..++.|+ .++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~-----------------------~~~~~G~------~~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERG-----------------------DKREYGK------AEIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeC-----------------------CCCcceE------EEEEecCC
Confidence 234456677789999999999999999999887321 0123344 35555455
Q ss_pred CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHH
Q 008567 460 DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALF 539 (561)
Q Consensus 460 ~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF 539 (561)
+.++..+.. .+..++.|+|.+. .+ +.+++++|.++++. ++++++++.| ++|+|||||++..+ .+..||
T Consensus 110 ~~l~~~~~~---~~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ll 177 (181)
T cd01742 110 SPLFEGLPD---EQTVWMSHGDEVV-----KL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEIL 177 (181)
T ss_pred ChhhcCCCC---ceEEEcchhhhhh-----hc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHHH
Confidence 455555432 2344678887662 34 67899999998887 9999999878 89999999999875 568999
Q ss_pred HHHH
Q 008567 540 LGLI 543 (561)
Q Consensus 540 ~~Fi 543 (561)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 9984
No 38
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.91 E-value=5.4e-23 Score=202.37 Aligned_cols=200 Identities=19% Similarity=0.275 Sum_probs=125.2
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~ 375 (561)
.+|++|+.|+++. .++.++|+..|+.+.+ ++|-.+ + +.+ .++|||||+||||++
T Consensus 2 ~~il~iD~~dsf~---~nl~~~l~~~g~~~~v---~~~~~~--~----------------~~l~~~~~~~iIlsgGPg~~ 57 (208)
T PRK05637 2 THVVLIDNHDSFV---YNLVDAFAVAGYKCTV---FRNTVP--V----------------EEILAANPDLICLSPGPGHP 57 (208)
T ss_pred CEEEEEECCcCHH---HHHHHHHHHCCCcEEE---EeCCCC--H----------------HHHHhcCCCEEEEeCCCCCH
Confidence 4799996555554 6899999999988866 233211 1 222 478999999999998
Q ss_pred chhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCccc-ccCcee
Q 008567 376 GVGG-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTM-RLGSRR 453 (561)
Q Consensus 376 ~~~g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~m-rlG~~~ 453 (561)
...+ ..+.++.+. .++|+||||+|||+|+.++|++|... ..+... ... +.+ .+.|.+. .++..+
T Consensus 58 ~d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~----~~~~G~--~~~-i~~------~~~~~~~~l~~~~~ 123 (208)
T PRK05637 58 RDAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPC----GPVHGT--TDN-MIL------TDAGVQSPVFAGLA 123 (208)
T ss_pred HHhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccC----Ccccce--EEE-eEE------CCCCCCCcccCCCC
Confidence 4332 345555443 57999999999999999999998421 011000 000 000 0111110 011112
Q ss_pred EEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCC--CCeEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 454 TLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDET--GKRMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 454 v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~d--g~~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
+.+.++ ...+.+.+..++. .|+++| ..+ +.+++++|.+.+ +..++++++.+.| +||+|||||...+
T Consensus 124 ~~~~~~---~~~~~g~~~~V~~--~H~~~v-----~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T 191 (208)
T PRK05637 124 TDVEPD---HPEIPGRKVPIAR--YHSLGC-----VVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLS 191 (208)
T ss_pred cccccc---cccccCCceEEEE--echhhh-----hcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcC
Confidence 211111 0122222334544 455444 444 789999998754 3458899999888 8999999999988
Q ss_pred CCCchHHHHHHHHHHHH
Q 008567 532 PGRPSALFLGLILAATK 548 (561)
Q Consensus 532 p~~~~~LF~~Fi~aa~~ 548 (561)
+ .+..+|++|++....
T Consensus 192 ~-~G~~il~nfl~~~~~ 207 (208)
T PRK05637 192 P-TGPIILSRCVEQLLA 207 (208)
T ss_pred C-CHHHHHHHHHHHHhc
Confidence 8 478999999987653
No 39
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.90 E-value=1.9e-23 Score=206.84 Aligned_cols=170 Identities=26% Similarity=0.316 Sum_probs=109.8
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC--------C---c------
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD--------R---G------ 376 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~--------~---~------ 376 (561)
.+++++++.+|+.+.. |++..+. .++.+.+..+||||+|||.-+ . .
T Consensus 27 ~~Yv~~i~~aG~~pv~---ip~~~~~--------------~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVP---IPYDADD--------------EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-EEEE---E-SS--H--------------HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCEEEE---EccCCCH--------------HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 5789999999997644 4444321 123466789999999999731 1 0
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeE
Q 008567 377 --VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRT 454 (561)
Q Consensus 377 --~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v 454 (561)
..-.+.+++.++++++|+||||+|||+|++++|+++. ++..... . .... ..+.. ....|++
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~--q~~~~~~---~----~~~~-----~~~~~---~~~~h~v 152 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLY--QDIPDQP---G----FPDH-----RQHPQ---DFPSHPV 152 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEE--SCCCCSS--------EEEC-----EE-S----TS--EEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCce--eecccCc---C----cccc-----ccccc---ccccccc
Confidence 1235666778888899999999999999999999873 3332210 0 0000 00010 2345899
Q ss_pred EEcCCCcccccccC-CceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCC-cEEEEcccCC
Q 008567 455 LFQTPDCVTSKLYR-NAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHP-FYVGVQFHPE 527 (561)
Q Consensus 455 ~l~~~~s~l~~iyg-~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p-~~~GvQFHPE 527 (561)
.+.++ +++.++++ .+..++++ |.+.+. .+ +.+++++|++.||. +|+||..+++ |++|+|||||
T Consensus 153 ~i~~~-s~l~~~~~~~~~~vns~--Hhq~v~-----~l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 153 RIVPG-SLLAKILGSEEIEVNSF--HHQAVK-----PL-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EEETT-STCCCTSHHCTEEEEEE--ECEEEC-----CH-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eeccC-chHHHHhCcCcceeecc--hhhhhh-----cc-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 99888 99999986 34455544 445554 35 78999999999997 9999999987 8999999999
No 40
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.90 E-value=7.6e-23 Score=232.15 Aligned_cols=195 Identities=21% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCceEEEEEeccCCCcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 295 KNSVRIAMVGKYVGLADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
+...+|+|| ||. |++ .++.++|+..|+++.+ +++...++ . -...++|||||+||+|
T Consensus 514 ~~~~~IlVI-D~g---ds~~~~l~~~L~~~G~~v~v---v~~~~~~~---------------~-~~~~~~DgLILsgGPG 570 (717)
T TIGR01815 514 GEGRRILLV-DHE---DSFVHTLANYLRQTGASVTT---LRHSHAEA---------------A-FDERRPDLVVLSPGPG 570 (717)
T ss_pred CCCCEEEEE-ECC---ChhHHHHHHHHHHCCCeEEE---EECCCChh---------------h-hhhcCCCEEEEcCCCC
Confidence 355799999 664 222 6899999999988755 22221111 0 1235799999999999
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCcee
Q 008567 374 DRGVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRR 453 (561)
Q Consensus 374 ~~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~ 453 (561)
++........++++.+.++|+||||||||+|+.++|++|..+ +.+++|+. .+
T Consensus 571 sp~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~-----------------------~~p~~G~~-----~~ 622 (717)
T TIGR01815 571 RPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL-----------------------PEPVHGKA-----SR 622 (717)
T ss_pred CchhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC-----------------------CCCeeCcc-----eE
Confidence 986556678889889999999999999999999999887431 23456654 34
Q ss_pred EEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 454 TLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 454 v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
+.+..+++++..+. ... ..+++|+|.+.... + +.++.++|.++++. ++++++.++| ++|+|||||+..++.
T Consensus 623 V~~~~~~~Lf~~lp-~~~--~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~-i~GVQFHPEsi~T~s 693 (717)
T TIGR01815 623 IRVLGPDALFAGLP-ERL--TVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLP-LAAVQFHPESIMTLD 693 (717)
T ss_pred EEECCCChhhhcCC-CCC--EEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCC-EEEEEeCCeeCCccC
Confidence 55544446666653 233 34778998775433 3 67899999998887 9999999999 899999999965543
Q ss_pred --CchHHHHHHHHHHHHh
Q 008567 534 --RPSALFLGLILAATKQ 549 (561)
Q Consensus 534 --~~~~LF~~Fi~aa~~~ 549 (561)
.+..||++|+..+...
T Consensus 694 g~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 694 GGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred chhHHHHHHHHHHHHhhc
Confidence 3689999999887643
No 41
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.90 E-value=1.4e-22 Score=231.68 Aligned_cols=200 Identities=21% Similarity=0.277 Sum_probs=138.3
Q ss_pred CceEEEEEeccCCCcccHHHHHHHHHHc-CceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 296 NSVRIAMVGKYVGLADSYLSVVKALLHA-CIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 296 ~~~~Iavvgky~~~~DaY~Si~~aL~~a-g~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
..++|.+|+.|++++ .++++.|+.. |..+.+ .++..+.++. +....+.++|||||+||||+
T Consensus 4 ~~~~iL~ID~~DSft---~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG~ 65 (742)
T TIGR01823 4 QRLHVLFIDSYDSFT---YNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPGN 65 (742)
T ss_pred CCceEEEEeCCcchH---HHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCCC
Confidence 457999997664443 5788888876 333322 2244332211 11234678999999999999
Q ss_pred CchhHHHHHHHHHHHc----CCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccC
Q 008567 375 RGVGGMILAAKYAREN----NIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLG 450 (561)
Q Consensus 375 ~~~~g~i~~ir~a~e~----~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG 450 (561)
+.....+..++++++. ++|+||||+|||+|+.++|++|... ..++.|+.
T Consensus 66 p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~-----------------------~~~~hG~~---- 118 (742)
T TIGR01823 66 PNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRL-----------------------PTPKHGQV---- 118 (742)
T ss_pred ccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEEC-----------------------CCCCcCeE----
Confidence 8766666667777764 4999999999999999999987321 11233432
Q ss_pred ceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCC
Q 008567 451 SRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 451 ~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~ 530 (561)
+.+..... .++..++. .. ..+.|+|.++++..+.+ .+.+++.+.++..+|++++.++| +||||||||+..
T Consensus 119 -~~v~~~~~-~lf~gl~~--~~--v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~ 188 (742)
T TIGR01823 119 -YEMHTNDA-AIFCGLFS--VK--STRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCC 188 (742)
T ss_pred -EEEEECCc-cccCCCCC--Cc--eeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCC
Confidence 34444333 55656542 23 35678999876554322 25567767666569999999999 689999999988
Q ss_pred CCCCchHHHHHHHHHHHHhh
Q 008567 531 RPGRPSALFLGLILAATKQL 550 (561)
Q Consensus 531 ~p~~~~~LF~~Fi~aa~~~~ 550 (561)
++..+.+||.+|++++.++.
T Consensus 189 s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 189 SELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCccHHHHHHHHHHHHHHhh
Confidence 88767999999999988665
No 42
>PRK13566 anthranilate synthase; Provisional
Probab=99.89 E-value=1.3e-22 Score=230.45 Aligned_cols=193 Identities=21% Similarity=0.260 Sum_probs=141.9
Q ss_pred CCceEEEEEeccCCCcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 295 KNSVRIAMVGKYVGLADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
+.+.+|.|| ++. |++ .++.++|+..|+++.+ +++-.+.+ . -...++|||||+||+|
T Consensus 524 ~~g~~IlvI-D~~---dsf~~~l~~~Lr~~G~~v~v---v~~~~~~~---------------~-~~~~~~DgVVLsgGpg 580 (720)
T PRK13566 524 GEGKRVLLV-DHE---DSFVHTLANYFRQTGAEVTT---VRYGFAEE---------------M-LDRVNPDLVVLSPGPG 580 (720)
T ss_pred CCCCEEEEE-ECC---CchHHHHHHHHHHCCCEEEE---EECCCChh---------------H-hhhcCCCEEEECCCCC
Confidence 456799999 664 223 5799999999998865 23322211 0 1235799999999999
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCcee
Q 008567 374 DRGVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRR 453 (561)
Q Consensus 374 ~~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~ 453 (561)
.+...+....++.+.++++|+||||+|||+|+.++|++|..+ ..++.|+. ++
T Consensus 581 sp~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~-----------------------~~~~~G~~-----~~ 632 (720)
T PRK13566 581 RPSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQL-----------------------AYPMHGKP-----SR 632 (720)
T ss_pred ChhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEEC-----------------------CCCccCCc-----eE
Confidence 986566788999999999999999999999999999988432 11233433 46
Q ss_pred EEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCC--
Q 008567 454 TLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSR-- 531 (561)
Q Consensus 454 v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~-- 531 (561)
+.+..++.++..+. .. +...++|+|.+.... + +.+++++|.++++. ++++++.+.| ++|+|||||+..+
T Consensus 633 V~v~~~~~Lf~~lp-~~--~~v~~~Hs~~v~~~~---L-p~~~~vlA~s~dg~-V~ai~~~~~p-i~GVQFHPE~i~t~~ 703 (720)
T PRK13566 633 IRVRGPGRLFSGLP-EE--FTVGRYHSLFADPET---L-PDELLVTAETEDGV-IMAIEHKTLP-VAAVQFHPESIMTLG 703 (720)
T ss_pred EEECCCCchhhcCC-CC--CEEEEecceeEeecc---C-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeccCeeCCcCC
Confidence 77665545555553 22 344677887765432 3 67899999999986 9999999988 8999999999765
Q ss_pred CCCchHHHHHHHHHHH
Q 008567 532 PGRPSALFLGLILAAT 547 (561)
Q Consensus 532 p~~~~~LF~~Fi~aa~ 547 (561)
...+..||++|++.+.
T Consensus 704 ~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 704 GDVGLRIIENVVRLLA 719 (720)
T ss_pred chhHHHHHHHHHHHhh
Confidence 2346899999998874
No 43
>PLN02347 GMP synthetase
Probab=99.89 E-value=1.7e-22 Score=223.18 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=131.7
Q ss_pred EEEEEeccCCCcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc--CCCeEEEcCCCCCC
Q 008567 299 RIAMVGKYVGLADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR--NAECVLVPGGFGDR 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~--~~DGIilpGG~G~~ 375 (561)
+|+|+ ||+.. | .++.++|+..|+.+.+ ++|..+ .+.+. ++||||||||++++
T Consensus 12 ~IlII-D~G~~---~t~~I~r~lrelgv~~~v---~p~~~~------------------~~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGSQ---YTHLITRRVRELGVYSLL---LSGTAS------------------LDRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCCc---HHHHHHHHHHHCCCeEEE---EECCCC------------------HHHHhcCCCCEEEECCCCCcc
Confidence 79999 78543 3 5799999999988765 333321 13333 79999999999765
Q ss_pred chh---H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCc
Q 008567 376 GVG---G-MILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGS 451 (561)
Q Consensus 376 ~~~---g-~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~ 451 (561)
... . ....++.+.+.++|+||||+|||+|+.++|++|.... ...+| .
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~-----------------------~~e~G------~ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE-----------------------KQEYG------R 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC-----------------------Ccccc------e
Confidence 211 1 1234555667799999999999999999999884210 01123 3
Q ss_pred eeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 452 RRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 452 ~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
.++.+..++.++..+.. ......++.|+|.+. .+ +.+++++|.++++. ++++++.+.| ++|+|||||++.+
T Consensus 118 ~~v~i~~~~~Lf~~l~~-~~~~~v~~~Hsd~V~-----~l-P~g~~vlA~s~~~~-iaai~~~~~~-i~GvQFHPE~~~t 188 (536)
T PLN02347 118 MEIRVVCGSQLFGDLPS-GETQTVWMSHGDEAV-----KL-PEGFEVVAKSVQGA-VVAIENRERR-IYGLQYHPEVTHS 188 (536)
T ss_pred EEEEEcCCChhhhcCCC-CceEEEEEEEEEEee-----eC-CCCCEEEEEeCCCc-EEEEEECCCC-EEEEEccCCCCcc
Confidence 46666555456655542 212345778988763 23 67899999999997 8999999998 8999999999987
Q ss_pred CCCchHHHHHHHHHHH
Q 008567 532 PGRPSALFLGLILAAT 547 (561)
Q Consensus 532 p~~~~~LF~~Fi~aa~ 547 (561)
+. +..|+++|+..+.
T Consensus 189 ~~-G~~iL~NFl~~ic 203 (536)
T PLN02347 189 PK-GMETLRHFLFDVC 203 (536)
T ss_pred ch-HHHHHHHHHHHHh
Confidence 74 6899999986544
No 44
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.88 E-value=2.8e-22 Score=198.84 Aligned_cols=195 Identities=22% Similarity=0.311 Sum_probs=133.6
Q ss_pred eEEEEEeccCCCcccHHHHHHHHH-HcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALL-HACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~-~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~- 375 (561)
+||||+ .|.+.. .-.++.+||+ .+|+++.. .|... ..+.++|+|+||||++..
T Consensus 1 ~~v~Vl-~~~G~n-~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGSN-CDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCcC-hHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 479999 775432 2267899998 88987533 23221 246789999999997531
Q ss_pred --------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hcccccccccCCcCCCCCCCCCceeEecCCCCcccCCc
Q 008567 376 --------GVGGMILAAKYARENNIPYLGICLGMQISVIE--FARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGS 445 (561)
Q Consensus 376 --------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie--~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~ 445 (561)
......+.++.+.++++|++|||.|+|+|+.+ +.+.+. ...+.+| .
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~---~n~~~~~--------------------~- 111 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT---RNASLKF--------------------I- 111 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE---EcCCCcE--------------------E-
Confidence 12456777888888999999999999999664 222210 0000000 0
Q ss_pred ccccCceeEEEcCCCcccccccCCcee--E-EeeeeeeeeeCcccccccccCCeEEE---EEeCCCCeEEEEEeCC-CCc
Q 008567 446 TMRLGSRRTLFQTPDCVTSKLYRNAEY--V-DERHRHRYEVNPEAIGVLEEAGLKFV---GKDETGKRMEILELPS-HPF 518 (561)
Q Consensus 446 ~mrlG~~~v~l~~~~s~l~~iyg~~~~--I-~~~h~HrY~vn~~~v~~le~~gl~v~---a~~~dg~~vE~ie~~~-~p~ 518 (561)
-....+++.+..+.+.+.++.... + +..|+|||++|+++++.+++.++.+. +.++||...++.++.+ ++|
T Consensus 112 ---~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 112 ---CRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred ---EEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 011234444433455454421222 2 46899999999999999988898744 4558998678888887 889
Q ss_pred EEEEcccCCCCCCC----CCchHHHHHHHH
Q 008567 519 YVGVQFHPEFKSRP----GRPSALFLGLIL 544 (561)
Q Consensus 519 ~~GvQFHPE~~~~p----~~~~~LF~~Fi~ 544 (561)
++|+|||||+.++| .++++||.+|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999987 789999999985
No 45
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.88 E-value=3.4e-22 Score=218.95 Aligned_cols=307 Identities=21% Similarity=0.292 Sum_probs=191.7
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccC---------Cccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLD---------LGNY 74 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dld---------lg~y 74 (561)
|||| |+-|++||.++++.||+.|+++|++|.++|- ++||. +.+|+.||+|+|-. +--+
T Consensus 1 ~~I~-GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp--------~~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVV-GTTSSAGKSTLTAGLCRILARRGYRVAPFKS--------QNMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEe-eCCCCCCHHHHHHHHHHHHHhCCCeEEEECC--------ccccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 6999 9999999999999999999999999999999 99999 89999999887421 1236
Q ss_pred ccccCCCCCCCCcccc-----cchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCC
Q 008567 75 ERFLDVRLTKNNNITT-----GKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGG 149 (561)
Q Consensus 75 erf~~~~l~~~~~~ts-----Gk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gG 149 (561)
++++++.|++..+.++ |+.+.. ..+.+|..... +...+.|++.+.+++ .++|++|||++|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~----~~a~~~~~~~~---~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGD----MNYQEYYKNKV---DFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCc----CCHHHHhhhhh---HHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 7999999999766554 776665 33344443222 335899999999987 579999999999
Q ss_pred ccccc----cccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhC-CCcccEEEE---eecCC
Q 008567 150 TVGDI----ESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRAL-GLTPHLLAC---RSAQP 221 (561)
Q Consensus 150 tvgdi----e~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~-Gi~pd~iI~---R~~~~ 221 (561)
...|+ .....++.++.+..+ ++.| +. +...+-. --+-+.++.++.. ++...++|+ ++...
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~ap-----VILV----~d-~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANAD-----AILV----AD-IDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCCC-----EEEE----Ee-CCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 88764 123344555555433 3333 11 1100000 0111223333332 245556664 32222
Q ss_pred CCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCCCCceEEE
Q 008567 222 LLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIA 301 (561)
Q Consensus 222 l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~~~~~~Ia 301 (561)
+..+..+.+..++.++.-+++.... +. +|. +... .+..+ ... .....++||
T Consensus 201 ~~~~~~~~l~e~~gipvLG~ip~~~--~l--l~~----~e~~----------------~~~~~---~~~--~~~~~~~Ia 251 (475)
T TIGR00313 201 VLKSGIEKLEELTGIPVLGVLPYDE--NL--FPE----EDSL----------------VIQER---RSR--GNAKSIRIG 251 (475)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCC--cC--CCh----HHhh----------------hHHhh---hcc--CCCCCcEEE
Confidence 2223344445556666555544322 11 222 1111 01111 000 111238999
Q ss_pred EEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-----
Q 008567 302 MVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG----- 376 (561)
Q Consensus 302 vvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~----- 376 (561)
|+ +|.....-| =+++|+.. + .+.|++.. +.|.++|+|+||||+....
T Consensus 252 v~-~~~~~~nf~--~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~~l 303 (475)
T TIGR00313 252 VV-RLPRISNFT--DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLYAL 303 (475)
T ss_pred EE-cCCcccCcc--ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHHHH
Confidence 99 764433323 46777766 2 24566643 3467899999999984421
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 377 -VGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 377 -~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
..++.+.|+.+.+++.|+||||.|||+|+-.
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1346788888888999999999999999654
No 46
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.2e-21 Score=217.47 Aligned_cols=195 Identities=18% Similarity=0.295 Sum_probs=133.5
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCce-eeeeeeeEeecCCCcccccccCCCcchhhHHHh--ccCCCeEEEcCCCCCCc
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIA-CSLKPSIDWIAASDLEDESAKLTPKDHAAAWET--LRNAECVLVPGGFGDRG 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~-~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~--l~~~DGIilpGG~G~~~ 376 (561)
|.+|+.|+++. .++.+.|+..|.. +.+ +.+.+.+. +. ..++||||++||||++.
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~~v~~------~~~~~~~~--------------~~~~~~~~d~vIlsgGP~~p~ 58 (534)
T PRK14607 2 IILIDNYDSFT---YNIYQYIGELGPEEIEV------VRNDEITI--------------EEIEALNPSHIVISPGPGRPE 58 (534)
T ss_pred EEEEECchhHH---HHHHHHHHHcCCCeEEE------ECCCCCCH--------------HHHHhcCCCEEEECCCCCChh
Confidence 77887775554 6899999999975 322 33322110 22 23689999999999874
Q ss_pred h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEE
Q 008567 377 V-GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTL 455 (561)
Q Consensus 377 ~-~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~ 455 (561)
. ...+..++. .+.++|+||||+|||+|+.++|++|.... .++.|++ +++.
T Consensus 59 ~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~-----------------------~~~~G~~-----~~v~ 109 (534)
T PRK14607 59 EAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAK-----------------------RILHGKT-----SPID 109 (534)
T ss_pred hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCC-----------------------ccccCCc-----eeEE
Confidence 2 233455655 46789999999999999999999874311 1223443 3444
Q ss_pred EcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCc
Q 008567 456 FQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRP 535 (561)
Q Consensus 456 l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~ 535 (561)
.... +++..+.. ... .+++|+|.++... + +.+++++|.++|+. +++++++++| ++|+|||||+..++ ++
T Consensus 110 ~~~~-~lf~~~~~-~~~--v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~p-i~GvQFHPE~~~t~-~g 178 (534)
T PRK14607 110 HNGK-GLFRGIPN-PTV--ATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHP-IFGVQFHPESILTE-EG 178 (534)
T ss_pred ECCC-cchhcCCC-CcE--Eeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCC-EEEEEeCCCCCCCh-hH
Confidence 4322 55555532 223 3678888885432 3 67899999999998 9999999999 89999999986554 57
Q ss_pred hHHHHHHHHHHHHh--hHHHHhhh
Q 008567 536 SALFLGLILAATKQ--LEAYLNTH 557 (561)
Q Consensus 536 ~~LF~~Fi~aa~~~--~~~~~~~~ 557 (561)
..+|.+|++.+... .++++++.
T Consensus 179 ~~i~~nFl~~~~~~~~~~~~i~~l 202 (534)
T PRK14607 179 KRILKNFLNYQREEIDIKSYLKKL 202 (534)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHh
Confidence 89999999987542 24455443
No 47
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.87 E-value=2.3e-21 Score=191.05 Aligned_cols=192 Identities=21% Similarity=0.232 Sum_probs=121.4
Q ss_pred eEEEEEeccC-CCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc
Q 008567 298 VRIAMVGKYV-GLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG 376 (561)
Q Consensus 298 ~~Iavvgky~-~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~ 376 (561)
++|+|+ +|+ +. ..|+.++|+.+|+++.+ +... +.+.++|+||+||+ |++.
T Consensus 2 ~~v~ii-d~~~GN---~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG~-g~~~ 52 (210)
T CHL00188 2 MKIGII-DYSMGN---LHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPGV-GSFD 52 (210)
T ss_pred cEEEEE-EcCCcc---HHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECCC-CchH
Confidence 479999 895 22 38999999999987654 2221 45678999999883 4421
Q ss_pred -----h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEec--CCCCcccCCccc
Q 008567 377 -----V--GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFM--PEGSRTHMGSTM 447 (561)
Q Consensus 377 -----~--~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm--~~~~~~~~G~~m 447 (561)
+ .+....++.+.++++|+||||+|||+|+..+++... +.-.-.+..|..+- +..+.+|+||+.
T Consensus 53 ~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~--------~glg~~~G~v~~~~~~~~~~~p~~Gw~~ 124 (210)
T CHL00188 53 LAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKE--------EGLGIYKGQVKRLKHSPVKVIPHMGWNR 124 (210)
T ss_pred HHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCc--------CCccceeEEEEECCCCCCCccCccCCcc
Confidence 1 256678888888999999999999999766443210 00001122333221 112679999983
Q ss_pred ccCceeEEEcCC------CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEE
Q 008567 448 RLGSRRTLFQTP------DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVG 521 (561)
Q Consensus 448 rlG~~~v~l~~~------~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~G 521 (561)
+.+..+ ++++..+. .... .++.|+|.+.|... .-+..++...+...+.+++.. + ++|
T Consensus 125 ------v~~~~~~~~~~~~~lf~~l~-~~~~--v~~~HS~~v~p~~~-----~~l~~t~~~~~~~~v~a~~~~--~-i~G 187 (210)
T CHL00188 125 ------LECQNSECQNSEWVNWKAWP-LNPW--AYFVHSYGVMPKSQ-----ACATTTTFYGKQQMVAAIEYD--N-IFA 187 (210)
T ss_pred ------ceecCCcccccCChhhcCCC-CCCE--EEEeCccEecCCCC-----ceEEEEEecCCcceEEEEecC--C-EEE
Confidence 344332 24666664 2333 46789998864321 112333333222348899852 4 899
Q ss_pred EcccCCCCCCCCCchHHHHHHHHH
Q 008567 522 VQFHPEFKSRPGRPSALFLGLILA 545 (561)
Q Consensus 522 vQFHPE~~~~p~~~~~LF~~Fi~a 545 (561)
+|||||+++ + .+..++++|++.
T Consensus 188 vQFHPE~s~-~-~G~~il~nfl~~ 209 (210)
T CHL00188 188 MQFHPEKSG-E-FGLWLLREFMKK 209 (210)
T ss_pred EecCCcccc-H-hHHHHHHHHHhh
Confidence 999999983 3 468999999865
No 48
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.87 E-value=1.2e-21 Score=216.42 Aligned_cols=184 Identities=20% Similarity=0.301 Sum_probs=129.1
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc--CCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR--NAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~--~~DGIilpGG~G~~ 375 (561)
.+|+|+ ||++... .++.++|+.+|+.+.+ ++|-.+ .+.+. ++||||||||+.+.
T Consensus 4 ~~i~vl-D~Gsq~~--~li~r~lrelg~~~~v---~p~~~~------------------~~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 4 DKILIL-DFGSQYT--QLIARRVRELGVYSEI---VPYDIS------------------AEEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred CEEEEE-ECCCCcH--HHHHHHHHHCCCeEEE---EECCCC------------------HHHHhccCCCEEEECCCCccc
Confidence 479999 8865421 4689999999987765 222211 03343 56999999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEE
Q 008567 376 GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTL 455 (561)
Q Consensus 376 ~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~ 455 (561)
.........+.+.+.++|+||||+|||+|+.++|++|... ...+ +|.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~-----------------------~~~e------~G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERA-----------------------GKRE------YGRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEec-----------------------CCcc------cceEEEE
Confidence 2222223345566789999999999999999999987321 0011 2335666
Q ss_pred EcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCc
Q 008567 456 FQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRP 535 (561)
Q Consensus 456 l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~ 535 (561)
+.+++.++..+. ....+ ++.|++.| ..+ +.|++++|.++++. ++++++.+.| ++|+|||||++.++ .+
T Consensus 111 i~~~~~Lf~~l~-~~~~v--~~~H~d~V-----~~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~-~G 178 (511)
T PRK00074 111 VDNDSPLFKGLP-EEQDV--WMSHGDKV-----TEL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTP-QG 178 (511)
T ss_pred EcCCChhhhcCC-CceEE--EEECCeEE-----Eec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCch-hH
Confidence 665544555543 23334 55677665 334 78999999998887 9999998888 89999999999876 47
Q ss_pred hHHHHHHHHHH
Q 008567 536 SALFLGLILAA 546 (561)
Q Consensus 536 ~~LF~~Fi~aa 546 (561)
..||++|+...
T Consensus 179 ~~il~nFl~~i 189 (511)
T PRK00074 179 KKLLENFVFDI 189 (511)
T ss_pred HHHHHHHHHHh
Confidence 89999999544
No 49
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=4.8e-21 Score=186.89 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=117.2
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
++|+|| ||+.-. +.|+.++|++.|+++.+ +... +.+.++|+||+|| +|.+
T Consensus 1 m~i~ii-d~g~gn--~~s~~~~l~~~g~~~~~------v~~~------------------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCAN--LSSVKFAIERLGYEPVV------SRDP------------------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCch--HHHHHHHHHHCCCeEEE------ECCH------------------HHhCCCCEEEECC-CCchHH
Confidence 479999 784322 48999999999877654 3321 5677899999987 3433
Q ss_pred chhH--HHHHHHHHHHcCCCEEEEehhHHHHHHHhccc----ccccccCCcCCCCCCCCCceeEec-CCCCcccCCcccc
Q 008567 376 GVGG--MILAAKYARENNIPYLGICLGMQISVIEFARS----VLGLKRANSNEFDSETPNPVVIFM-PEGSRTHMGSTMR 448 (561)
Q Consensus 376 ~~~g--~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~----v~gl~da~s~Ef~~~~~~~vi~lm-~~~~~~~~G~~mr 448 (561)
.... ....++.+++.++|+||||+|||+|+.+++.. -+|+ .+..+..+. +....+++||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~-----------~~g~v~~~~~~~~~~p~~G~~-- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGI-----------IDGPVKKMTDFGLPLPHMGWN-- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCccc-----------ccEEEEECCCCCCCCCccccc--
Confidence 1111 11234455556899999999999999887431 1111 111222211 01246788886
Q ss_pred cCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCC
Q 008567 449 LGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEF 528 (561)
Q Consensus 449 lG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~ 528 (561)
++.+.+++.++..+. .. ...+|+|+|.+.++ ...++.++++. .....+.+.+ ++|+|||||+
T Consensus 120 ----~v~~~~~~~l~~~l~-~~--~~v~~~Hs~~lp~~---------~~~la~s~~~~-~~~~~~~~~~-i~G~QFHPE~ 181 (196)
T PRK13170 120 ----QVTPQAGHPLFQGIE-DG--SYFYFVHSYAMPVN---------EYTIAQCNYGE-PFSAAIQKDN-FFGVQFHPER 181 (196)
T ss_pred ----eeEeCCCChhhhCCC-cC--CEEEEECeeecCCC---------CcEEEEecCCC-eEEEEEEcCC-EEEEECCCCC
Confidence 566655545666653 23 33478899977432 23567776665 3333344445 9999999999
Q ss_pred CCCCCCchHHHHHHHH
Q 008567 529 KSRPGRPSALFLGLIL 544 (561)
Q Consensus 529 ~~~p~~~~~LF~~Fi~ 544 (561)
+.. .+..++++|++
T Consensus 182 ~~~--~G~~~l~nfl~ 195 (196)
T PRK13170 182 SGA--AGAQLLKNFLE 195 (196)
T ss_pred ccc--ccHHHHHHHhh
Confidence 853 47899999975
No 50
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.86 E-value=1.8e-21 Score=188.71 Aligned_cols=149 Identities=25% Similarity=0.333 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-c----------------
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-G---------------- 376 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-~---------------- 376 (561)
.+++++|+.+|+.+.+ +++.... .+....+.++||||||||++.. .
T Consensus 22 ~~~~~~l~~~G~~~~i---v~~~~~~--------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVL---LPPVDDE--------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEE---eCCCCCh--------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 5789999999987654 3333211 0122456789999999997531 1
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEE
Q 008567 377 -VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTL 455 (561)
Q Consensus 377 -~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~ 455 (561)
.......++++.+.++|+||||+|||+|+.++|+++..
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~----------------------------------------- 123 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQ----------------------------------------- 123 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEc-----------------------------------------
Confidence 01346788888889999999999999999999987621
Q ss_pred EcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCC-CCC
Q 008567 456 FQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSR-PGR 534 (561)
Q Consensus 456 l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~-p~~ 534 (561)
. . .+ .+.|+++| ..+ +.+++++|.++|+. +|+++++++++++|+|||||...+ +..
T Consensus 124 ---~-~----------~v--~~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~ 180 (189)
T cd01745 124 ---D-I----------RV--NSLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPD 180 (189)
T ss_pred ---C-C----------ce--echHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCch
Confidence 0 0 12 23466554 334 67899999988887 999999986669999999999998 667
Q ss_pred chHHHHHHH
Q 008567 535 PSALFLGLI 543 (561)
Q Consensus 535 ~~~LF~~Fi 543 (561)
...||++|+
T Consensus 181 ~~~if~~f~ 189 (189)
T cd01745 181 SLKLFEAFV 189 (189)
T ss_pred HhHHHHHhC
Confidence 899999984
No 51
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=5.4e-21 Score=188.35 Aligned_cols=193 Identities=23% Similarity=0.264 Sum_probs=120.5
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG- 376 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~- 376 (561)
+||+|| +|+.-. ..|+.++|+..|+.+ ++.|+.+. +++.++|+|||||+.....
T Consensus 2 ~~~~ii-d~g~gn--~~s~~~al~~~g~~~----~v~~~~~~------------------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSGN--LRSAAKALERAGAGA----DVVVTADP------------------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCCh--HHHHHHHHHHcCCCc----cEEEECCH------------------HHhcCCCEEEECCCCcHHHH
Confidence 589999 895321 389999999999854 34455431 5689999999999643211
Q ss_pred ---h--hHHHHHH-HHHHHcCCCEEEEehhHHHHHHH---hcccccccccCCcCCCCCCCCCceeEecC---CCCcccCC
Q 008567 377 ---V--GGMILAA-KYARENNIPYLGICLGMQISVIE---FARSVLGLKRANSNEFDSETPNPVVIFMP---EGSRTHMG 444 (561)
Q Consensus 377 ---~--~g~i~~i-r~a~e~~iPvLGICLGmQLL~ie---~g~~v~gl~da~s~Ef~~~~~~~vi~lm~---~~~~~~~G 444 (561)
. .+....+ +.+.++++|+||||+|||+|+.+ .+ .+.++. -.+..|...-+ ..+.+|+|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~-~~~glg---------~l~g~v~~~~~~~~~~~~p~~G 126 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHG-DTPGLG---------LIPGEVVRFQPDGPALKVPHMG 126 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccC-CCCCcc---------eEeEEEEEcCCCCCCCccCccC
Confidence 1 1234444 44456899999999999999765 11 010000 00111111101 11356788
Q ss_pred cccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcc
Q 008567 445 STMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQF 524 (561)
Q Consensus 445 ~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQF 524 (561)
|+ ++.+.++++++..+.. .. ..++.|+|.+.+. + +..++|.++++..+.++.. +.+ ++|+||
T Consensus 127 ~~------~v~~~~~~~lf~~~~~-~~--~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~-~~~-i~GvQF 188 (209)
T PRK13146 127 WN------TVDQTRDHPLFAGIPD-GA--RFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVA-RDN-LFATQF 188 (209)
T ss_pred hH------HeeeCCCChhccCCCC-CC--EEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEe-cCC-EEEEEc
Confidence 86 4565555566666642 33 3478899988532 1 3457777776654566654 345 999999
Q ss_pred cCCCCCCCCCchHHHHHHHHH
Q 008567 525 HPEFKSRPGRPSALFLGLILA 545 (561)
Q Consensus 525 HPE~~~~p~~~~~LF~~Fi~a 545 (561)
|||++.. ....|+++|++.
T Consensus 189 HPE~s~~--~G~~ll~nfl~~ 207 (209)
T PRK13146 189 HPEKSQD--AGLALLRNFLAW 207 (209)
T ss_pred CCcccHH--HHHHHHHHHHhh
Confidence 9999743 578999999875
No 52
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=1.8e-20 Score=184.72 Aligned_cols=196 Identities=19% Similarity=0.224 Sum_probs=120.2
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--c-
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR--G- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~--~- 376 (561)
|+|+ ||+.-. -.|+.++|+..+.++. |+.. + +.+.++|+||+||+ |+. .
T Consensus 2 i~ii-dyg~gN--l~s~~~al~~~~~~~~------~~~~-----------~-------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMGN--IHSCLKAVSLYTKDFV------FTSD-----------P-------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCch--HHHHHHHHHHcCCeEE------EECC-----------H-------HHhccCCEEEECCC-CchHHHH
Confidence 8899 895321 2899999999997653 3332 1 56789999999997 332 1
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCC--CCcccCCcccccC
Q 008567 377 ----VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPE--GSRTHMGSTMRLG 450 (561)
Q Consensus 377 ----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~--~~~~~~G~~mrlG 450 (561)
..++...++.+.+.++|+||||+|||+|+.+++-..-+. +....+.-.-.+..|.. ++. .+.+|+||+.
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~-~~~~~~Glg~~~~~v~~-~~~~~~~~ph~Gw~~--- 128 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGT-KKEQIEGLGYIKGKIKK-FEGKDFKVPHIGWNR--- 128 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCC-cCcccCCcceeEEEEEE-cCCCCCcCCccCccc---
Confidence 136777888888889999999999999987654110000 00000000001122222 221 2578999983
Q ss_pred ceeEEEc--CCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCC-CCeEEEEEeCCCCcEEEEcccCC
Q 008567 451 SRRTLFQ--TPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDET-GKRMEILELPSHPFYVGVQFHPE 527 (561)
Q Consensus 451 ~~~v~l~--~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~d-g~~vE~ie~~~~p~~~GvQFHPE 527 (561)
+.+. .+++++..+.. .. ..+|+|+|.+++. .-+..++..++ +..+.++. .+.+ ++|+|||||
T Consensus 129 ---v~~~~~~~~~lf~~l~~-~~--~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~-i~GvQFHPE 193 (210)
T PRK14004 129 ---LQIRRKDKSKLLKGIGD-QS--FFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN-IFGTQFHPE 193 (210)
T ss_pred ---ceeccCCCCccccCCCC-CC--EEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC-EEEEeCCcc
Confidence 3332 23356666642 33 3478899865321 12345555554 44233444 4455 899999999
Q ss_pred CCCCCCCchHHHHHHHHH
Q 008567 528 FKSRPGRPSALFLGLILA 545 (561)
Q Consensus 528 ~~~~p~~~~~LF~~Fi~a 545 (561)
++. + .+..++++|++.
T Consensus 194 ~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 194 KSH-T-HGLKLLENFIEF 209 (210)
T ss_pred cCc-h-hHHHHHHHHHhh
Confidence 988 4 578999999864
No 53
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=2.6e-20 Score=205.93 Aligned_cols=189 Identities=18% Similarity=0.197 Sum_probs=125.0
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~ 375 (561)
.+|.+|+.|+++. .++.+.|+..|+.+.+ +....+.+ ...+.+ .++|+|||+||||++
T Consensus 2 ~~iLiIDn~dsft---~nl~~~lr~~g~~v~V---~~~~~~~~--------------~~~~~l~~~~~~~IIlSpGPg~p 61 (531)
T PRK09522 2 ADILLLDNIDSFT---YNLADQLRSNGHNVVI---YRNHIPAQ--------------TLIERLATMSNPVLMLSPGPGVP 61 (531)
T ss_pred CeEEEEeCCChHH---HHHHHHHHHCCCCEEE---EECCCCCc--------------cCHHHHHhcCcCEEEEcCCCCCh
Confidence 4799996664443 5799999999987655 22211110 011333 357899999999998
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEE
Q 008567 376 GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTL 455 (561)
Q Consensus 376 ~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~ 455 (561)
...+....+......++|+||||+|||+|+.++|++|... .+ ...|.. ..+.
T Consensus 62 ~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~-----~~------------------~~~G~~-----~~i~ 113 (531)
T PRK09522 62 SEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-----GE------------------ILHGKA-----SSIE 113 (531)
T ss_pred hhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-----Cc------------------eeeeeE-----EEEe
Confidence 5333332332223468999999999999999999998421 00 111221 1121
Q ss_pred EcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCc
Q 008567 456 FQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRP 535 (561)
Q Consensus 456 l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~ 535 (561)
..+++++..+. ....+ .+.|++.+. .+ +.+++++|. .|+. ++++++.+.| +||+|||||...++ .+
T Consensus 114 -~~~~~lf~~~~-~~~~v--~~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~-i~GVQFHPEs~~T~-~G 179 (531)
T PRK09522 114 -HDGQAMFAGLT-NPLPV--ARYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADR-VCGFQFHPESILTT-QG 179 (531)
T ss_pred -ecCCccccCCC-CCcEE--EEehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCC-EEEEEecCccccCc-ch
Confidence 12224555543 23344 456776653 34 778999996 5776 9999999888 89999999999998 57
Q ss_pred hHHHHHHHHHHHH
Q 008567 536 SALFLGLILAATK 548 (561)
Q Consensus 536 ~~LF~~Fi~aa~~ 548 (561)
..||++|++.+..
T Consensus 180 ~~il~NFl~~~~~ 192 (531)
T PRK09522 180 ARLLEQTLAWAQQ 192 (531)
T ss_pred HHHHHHHHHHHhh
Confidence 8999999988753
No 54
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.84 E-value=4.4e-20 Score=212.26 Aligned_cols=196 Identities=15% Similarity=0.209 Sum_probs=130.7
Q ss_pred ceEEEEEeccCCCcccHHHHHHHHHHc-CceeeeeeeeEeecCCCcccccccCCCcchhhHHH---hccCCCeEEEcCCC
Q 008567 297 SVRIAMVGKYVGLADSYLSVVKALLHA-CIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWE---TLRNAECVLVPGGF 372 (561)
Q Consensus 297 ~~~Iavvgky~~~~DaY~Si~~aL~~a-g~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~---~l~~~DGIilpGG~ 372 (561)
.++|.+|+.|+++. .++.+.|... |..+.+ +..+++. +.+... .+..+|+|||+|||
T Consensus 81 ~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~V------v~nd~~~----------~~~~~~~~~~~~~~d~IVlSPGP 141 (918)
T PLN02889 81 FVRTLLIDNYDSYT---YNIYQELSIVNGVPPVV------VRNDEWT----------WEEVYHYLYEEKAFDNIVISPGP 141 (918)
T ss_pred cceEEEEeCCCchH---HHHHHHHHHhcCCCEEE------EeCCCCC----------HHHHHhhhhcccCCCEEEECCCC
Confidence 37999999886665 6899999888 876644 2222211 111111 13579999999999
Q ss_pred CCCchh---HH-HHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccc
Q 008567 373 GDRGVG---GM-ILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMR 448 (561)
Q Consensus 373 G~~~~~---g~-i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mr 448 (561)
|+|... +. ++.+..+ .++|+||||||||+|+.+||++|...+ .+..|..
T Consensus 142 G~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~-----------------------~~~HG~~-- 194 (918)
T PLN02889 142 GSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAP-----------------------EPVHGRL-- 194 (918)
T ss_pred CCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCC-----------------------Cceeeee--
Confidence 998532 21 2333322 479999999999999999999984321 1112332
Q ss_pred cCceeEEEcCCCcccccccCC---ceeEEeeeeeeeeeCcccccccccCCeEEEEEeCC---------------------
Q 008567 449 LGSRRTLFQTPDCVTSKLYRN---AEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDET--------------------- 504 (561)
Q Consensus 449 lG~~~v~l~~~~s~l~~iyg~---~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~d--------------------- 504 (561)
..+.. .++.+|..+... ...+. ..|+..+++..+ +.++.++|+..+
T Consensus 195 ---s~I~h-~~~~lF~glp~~~~~~f~v~--RYHSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~ 264 (918)
T PLN02889 195 ---SEIEH-NGCRLFDDIPSGRNSGFKVV--RYHSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAYES 264 (918)
T ss_pred ---eeEee-cCchhhcCCCcCCCCCceEE--eCCCcccccCCC----CCceEEEEEECCCcccccccccccccccccccc
Confidence 22222 233566666421 13343 348888765433 456777776543
Q ss_pred -------------------------------CCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHHHHHHHhh
Q 008567 505 -------------------------------GKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLILAATKQL 550 (561)
Q Consensus 505 -------------------------------g~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi~aa~~~~ 550 (561)
+..+++++|+.+| ++|||||||...++. +..||.+|++++.++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P-~~GVQfHPESi~t~~-G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 265 QIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP-HYGLQFHPESIATCY-GRQIFKNFREITQDYW 339 (918)
T ss_pred cccccccccccccccccccccccccccccCCCCeeEEEEECCCc-eEEEEeCCccccCch-hHHHHHHHHHHHHHHh
Confidence 1369999999999 799999999998874 6899999999988654
No 55
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=7.2e-20 Score=179.51 Aligned_cols=193 Identities=24% Similarity=0.275 Sum_probs=121.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC-Cc-
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD-RG- 376 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~-~~- 376 (561)
+|+|+ ||+... . .++.++|+..|+++.+ +.. + +.+.++|+||+|||... ..
T Consensus 1 ~i~~~-d~~~~~-~-~~i~~~l~~~G~~v~~------~~~-----------~-------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGMGN-L-RSVEKALERLGAEAVI------TSD-----------P-------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCCch-H-HHHHHHHHHCCCeEEE------ECC-----------H-------HHhccCCEEEECCCCchHHHH
Confidence 37888 785321 1 6899999999987755 221 1 46788999999986321 11
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--ccccccccCCcCCCCCCCCCceeEecC---CCCcccCCccc
Q 008567 377 ----VGGMILAAKYARENNIPYLGICLGMQISVIEFA--RSVLGLKRANSNEFDSETPNPVVIFMP---EGSRTHMGSTM 447 (561)
Q Consensus 377 ----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g--~~v~gl~da~s~Ef~~~~~~~vi~lm~---~~~~~~~G~~m 447 (561)
..+..+.++.+.++++|+||||+|||+|+.++. +.+.++.. + ...+.. .+ +...++.
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~-----l----~g~v~~-~~~~~~~~~~~~---- 119 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGL-----L----PGRVRR-FPPEEGLKVPHM---- 119 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccce-----E----EEEEEE-cCCCCCCcccEe----
Confidence 135678888888899999999999999987631 11111000 0 001111 11 0012233
Q ss_pred ccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCC
Q 008567 448 RLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPE 527 (561)
Q Consensus 448 rlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE 527 (561)
|.+.+.+.+++.++..+. ....+ ++.|++.+.+ +.++.+++.++++..++++.. +.+ ++|+|||||
T Consensus 120 --g~~~i~~~~~~~l~~~l~-~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE 185 (205)
T PRK13141 120 --GWNQLELKKESPLLKGIP-DGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPE 185 (205)
T ss_pred --cCccceeCCCChhhhCCC-CCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCc
Confidence 345666666645554443 23333 4568888742 345778888776644777755 344 999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHH
Q 008567 528 FKSRPGRPSALFLGLILAATK 548 (561)
Q Consensus 528 ~~~~p~~~~~LF~~Fi~aa~~ 548 (561)
+... ....||++|+++|++
T Consensus 186 ~~~~--~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 186 KSGD--VGLKILKNFVEMVEE 204 (205)
T ss_pred cchH--HHHHHHHHHHHHhhc
Confidence 9753 468999999988743
No 56
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=4.1e-20 Score=179.32 Aligned_cols=178 Identities=21% Similarity=0.263 Sum_probs=109.3
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-ch-
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-GV- 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-~~- 377 (561)
|+|+ ||+.-. ..|+.++|++.|+++.+ +... +.+.++|+||+||+.... ..
T Consensus 2 i~ii-dyg~gN--~~s~~~al~~~g~~~~~------v~~~------------------~~l~~~D~lIlPG~g~~~~~~~ 54 (192)
T PRK13142 2 IVIV-DYGLGN--ISNVKRAIEHLGYEVVV------SNTS------------------KIIDQAETIILPGVGHFKDAMS 54 (192)
T ss_pred EEEE-EcCCcc--HHHHHHHHHHcCCCEEE------EeCH------------------HHhccCCEEEECCCCCHHHHHH
Confidence 8899 895322 48999999999876543 3321 567889999999963311 11
Q ss_pred ----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh-cccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCce
Q 008567 378 ----GGMILAAKYARENNIPYLGICLGMQISVIEF-ARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSR 452 (561)
Q Consensus 378 ----~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~-g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~ 452 (561)
.+..++++. +.++|+||||+|||+|+-.. -+...|| .-.+..|.++-++.+.+|+|||..
T Consensus 55 ~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GL---------gll~~~V~rf~~~~~vph~GWn~~---- 119 (192)
T PRK13142 55 EIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGL---------GFIPGNISRIQTEYPVPHLGWNNL---- 119 (192)
T ss_pred HHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCcc---------CceeEEEEECCCCCCCCccccccc----
Confidence 235566665 46899999999999997653 0111111 112334445423346799999942
Q ss_pred eEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 453 RTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGK-RMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 453 ~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~-~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
....+++. . ..++.|+|.+.. +.. +.+.+..|. ++.+++ +.+++|+|||||++..
T Consensus 120 ----~~~~~l~~------~--~~yFVhSy~v~~-------~~~--v~~~~~yg~~~~~~v~---~~n~~g~QFHPEkS~~ 175 (192)
T PRK13142 120 ----VSKHPMLN------Q--DVYFVHSYQAPM-------SEN--VIAYAQYGADIPAIVQ---FNNYIGIQFHPEKSGT 175 (192)
T ss_pred ----CCCCcccc------c--EEEEECCCeECC-------CCC--EEEEEECCCeEEEEEE---cCCEEEEecCcccCcH
Confidence 11212221 1 247899998831 112 233333333 344443 3348999999999875
Q ss_pred CCCchHHHHHHHHH
Q 008567 532 PGRPSALFLGLILA 545 (561)
Q Consensus 532 p~~~~~LF~~Fi~a 545 (561)
. +..|+++|++-
T Consensus 176 ~--G~~ll~nf~~~ 187 (192)
T PRK13142 176 Y--GLQILRQAIQG 187 (192)
T ss_pred h--HHHHHHHHHhc
Confidence 4 68999999763
No 57
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1.8e-19 Score=176.34 Aligned_cols=195 Identities=22% Similarity=0.265 Sum_probs=120.1
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
+||.|+ +|..- + -.++.++|+.+|+++.+ +.. . ..+.++|||++|||....
T Consensus 1 ~~~~v~-~~~~~-~-~~~~~~~l~~~G~~~~~------~~~-~-----------------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG-N-LRSVSKALERAGAEVVI------TSD-P-----------------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc-c-HHHHHHHHHHCCCeEEE------ECC-H-----------------HHHccCCEEEECCCCCHHHH
Confidence 479999 78422 2 17899999999987654 111 0 456789999999853322
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCcee
Q 008567 376 --GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRR 453 (561)
Q Consensus 376 --~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~ 453 (561)
......+.++++.++++|+||||+|||+|+.++.... ..+++. ..+..+.........++ .|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~-~~~~lg------~~~g~v~~~~~~~~~~~------~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGG-GVRGLG------LFPGRVVRFPAGVKVPH------MGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCC-CCCCcc------eeeEEEEEcCCCCCCCe------ecceE
Confidence 2345678888899999999999999999987532100 000000 00111111100001122 24456
Q ss_pred EEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 454 TLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 454 v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
+.+..++.++..+ . ...+ .+.|+|.+.+ +.++.+++.++++..+++.... .+ ++|+|||||+...
T Consensus 121 v~~~~~~~l~~~l-~-~~~~--~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~-~~gvQfHPE~~~~-- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEYV--YFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DN-VFGTQFHPEKSGE-- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcEE--EEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CC-EEEEeCCCccchH--
Confidence 7666554455555 2 2233 4578887743 2346788888876534454443 34 8999999999842
Q ss_pred CchHHHHHHHHHHH
Q 008567 534 RPSALFLGLILAAT 547 (561)
Q Consensus 534 ~~~~LF~~Fi~aa~ 547 (561)
....||++|++.+.
T Consensus 186 ~g~~i~~~f~~~~~ 199 (200)
T PRK13143 186 TGLKILENFVELIK 199 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45799999998763
No 58
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1e-19 Score=178.05 Aligned_cols=187 Identities=24% Similarity=0.247 Sum_probs=114.3
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch--
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV-- 377 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~-- 377 (561)
|+|| ||+.-. -.|+.++|+..|+++.+ +... +.+.++|+|||||+......
T Consensus 2 i~ii-d~g~~n--~~~v~~~l~~~g~~~~~------~~~~------------------~~l~~~d~lilPG~g~~~~~~~ 54 (201)
T PRK13152 2 IALI-DYKAGN--LNSVAKAFEKIGAINFI------AKNP------------------KDLQKADKLLLPGVGSFKEAMK 54 (201)
T ss_pred EEEE-ECCCCc--HHHHHHHHHHCCCeEEE------ECCH------------------HHHcCCCEEEECCCCchHHHHH
Confidence 7899 885221 27999999999876533 3321 45778999999885432111
Q ss_pred ----hHHHHHHHH-HHHcCCCEEEEehhHHHHHHH-h-cccccccccCCcCCCCCCCCCceeEecC--CCCcccCCcccc
Q 008567 378 ----GGMILAAKY-ARENNIPYLGICLGMQISVIE-F-ARSVLGLKRANSNEFDSETPNPVVIFMP--EGSRTHMGSTMR 448 (561)
Q Consensus 378 ----~g~i~~ir~-a~e~~iPvLGICLGmQLL~ie-~-g~~v~gl~da~s~Ef~~~~~~~vi~lm~--~~~~~~~G~~mr 448 (561)
.+....++. +.+.++|+||||+|||+|+.+ . |+..-++ . . .+..|.++-. ....+|+||
T Consensus 55 ~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~l---g--~----~~g~v~~~~~~~~~~~~~~g~--- 122 (201)
T PRK13152 55 NLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGL---G--F----IEGEVVKFEEDLNLKIPHMGW--- 122 (201)
T ss_pred HHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCc---c--c----ccEEEEECCCCCCCcCCccCe---
Confidence 123444544 457899999999999999875 1 2221111 0 0 1122222110 112356666
Q ss_pred cCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccCC
Q 008567 449 LGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGK-RMEILELPSHPFYVGVQFHPE 527 (561)
Q Consensus 449 lG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~-~vE~ie~~~~p~~~GvQFHPE 527 (561)
+++.+.+++.++..+. .. ...++.|+|.+... + ..+++..+++. .+++++ +. +++|+|||||
T Consensus 123 ---~~v~~~~~~~l~~~l~-~~--~~~~~vHS~~v~~~------~--~~v~a~~~~g~~~~~a~~--~~-~i~GvQFHPE 185 (201)
T PRK13152 123 ---NELEILKQSPLYQGIP-EK--SDFYFVHSFYVKCK------D--EFVSAKAQYGHKFVASLQ--KD-NIFATQFHPE 185 (201)
T ss_pred ---EEEEECCCChhhhCCC-CC--CeEEEEcccEeecC------C--CcEEEEECCCCEEEEEEe--cC-CEEEEeCCCe
Confidence 4777776645555442 22 33477899988531 1 34677777664 355665 33 4999999999
Q ss_pred CCCCCCCchHHHHHHHH
Q 008567 528 FKSRPGRPSALFLGLIL 544 (561)
Q Consensus 528 ~~~~p~~~~~LF~~Fi~ 544 (561)
++.. ....||++|++
T Consensus 186 ~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 186 KSQN--LGLKLLENFAR 200 (201)
T ss_pred ecCh--hhHHHHHHHHh
Confidence 9853 46899999985
No 59
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=8.2e-20 Score=178.40 Aligned_cols=184 Identities=27% Similarity=0.307 Sum_probs=113.9
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG--- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~--- 376 (561)
|+|+ ||+.-. +.|+.++|+..|+++.+ +.. + +.+.++|+||+||| |++.
T Consensus 2 i~vi-d~g~gn--~~~~~~~l~~~g~~v~~------~~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAGN--LRSVANALKRLGVEAVV------SSD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCCh--HHHHHHHHHHCCCcEEE------EcC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7889 785322 47899999999987644 221 1 55788999999985 3321
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc-cc--cccccCCcCCCCCCCCCceeEecCC--CCcccCCccc
Q 008567 377 ----VGGMILAAKYARENNIPYLGICLGMQISVIEFAR-SV--LGLKRANSNEFDSETPNPVVIFMPE--GSRTHMGSTM 447 (561)
Q Consensus 377 ----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~-~v--~gl~da~s~Ef~~~~~~~vi~lm~~--~~~~~~G~~m 447 (561)
..+..+.++.+++.++|+||||+|||+|+.++.. .+ +|+-+ ..+.. ++. .+.++.|++
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~-----------~~v~~-~~~~~~~~~~~G~~- 120 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIP-----------GDVKR-FRSEPLKVPQMGWN- 120 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEE-----------EEEEE-cCCCCCCCCccCcc-
Confidence 1345678888888999999999999999887321 00 00000 01111 111 122455554
Q ss_pred ccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccC
Q 008567 448 RLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGK-RMEILELPSHPFYVGVQFHP 526 (561)
Q Consensus 448 rlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~-~vE~ie~~~~p~~~GvQFHP 526 (561)
++.+.+++.++..+. .... .+++|+|.+.+. +. ..++|.++++. .+++++ +.+ ++|+||||
T Consensus 121 -----~v~~~~~~~lf~~l~-~~~~--~~~~Hs~~v~~~------~~-~~~lA~s~~~~~~~~~~~--~~~-i~GvQFHP 182 (199)
T PRK13181 121 -----SVKPLKESPLFKGIE-EGSY--FYFVHSYYVPCE------DP-EDVLATTEYGVPFCSAVA--KDN-IYAVQFHP 182 (199)
T ss_pred -----ccccCCCChhHcCCC-CCCE--EEEeCeeEeccC------Cc-ccEEEEEcCCCEEEEEEE--CCC-EEEEECCC
Confidence 555555545555543 2333 357788887432 11 34677776654 233443 445 89999999
Q ss_pred CCCCCCCCchHHHHHHHH
Q 008567 527 EFKSRPGRPSALFLGLIL 544 (561)
Q Consensus 527 E~~~~p~~~~~LF~~Fi~ 544 (561)
|++. + ....||++|++
T Consensus 183 E~~~-~-~g~~ll~nfl~ 198 (199)
T PRK13181 183 EKSG-K-AGLKLLKNFAE 198 (199)
T ss_pred ccCC-H-HHHHHHHHHHh
Confidence 9873 2 46899999975
No 60
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.83 E-value=7.1e-20 Score=178.53 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=116.0
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG--- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~--- 376 (561)
|+|+ ||+.-. -.++.++|+.+|+++.+ +... +.+.++|+|++||| +.+.
T Consensus 1 i~i~-d~g~~~--~~~~~~~l~~~g~~v~v------~~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMGN--LRSVANALERLGAEVII------TSDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCCh--HHHHHHHHHHCCCeEEE------EcCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5678 785321 26899999999987755 2221 45778999999885 3332
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--cccccccccCCcCCCCCCCCCceeEecCC---CCcccCCccc
Q 008567 377 ----VGGMILAAKYARENNIPYLGICLGMQISVIEF--ARSVLGLKRANSNEFDSETPNPVVIFMPE---GSRTHMGSTM 447 (561)
Q Consensus 377 ----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~--g~~v~gl~da~s~Ef~~~~~~~vi~lm~~---~~~~~~G~~m 447 (561)
..+..+.++.+.++++|+||||+|||+|+.++ |+.+.++ . -.+..+.. ++. .+.+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~l---g------~~~g~v~~-~~~~~~~~~~~~G~-- 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGL---G------LIPGKVVR-FPASEGLKVPHMGW-- 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCC---C------CcceEEEE-CCCCCCceEEEecc--
Confidence 13567888988889999999999999998762 1111110 0 00111111 110 01234455
Q ss_pred ccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCC
Q 008567 448 RLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPE 527 (561)
Q Consensus 448 rlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE 527 (561)
+.+...++++++..+.. ... ..++|+|.+.+ ...+.++|.++++..+.++ +.+.+ ++|+|||||
T Consensus 121 ----~~v~~~~~~~lf~~l~~-~~~--v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFHPE 184 (198)
T cd01748 121 ----NQLEITKESPLFKGIPD-GSY--FYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFHPE 184 (198)
T ss_pred ----ceEEECCCChhhhCCCC-CCe--EEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECCCc
Confidence 45666666566666642 333 46789988853 1235577877766523333 44555 899999999
Q ss_pred CCCCCCCchHHHHHHH
Q 008567 528 FKSRPGRPSALFLGLI 543 (561)
Q Consensus 528 ~~~~p~~~~~LF~~Fi 543 (561)
++.. .+..++.+|+
T Consensus 185 ~~~~--~g~~~~~nf~ 198 (198)
T cd01748 185 KSGK--AGLKLLKNFL 198 (198)
T ss_pred cccH--hHHHHHHhhC
Confidence 9853 4688898884
No 61
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.83 E-value=8.1e-20 Score=186.86 Aligned_cols=174 Identities=25% Similarity=0.307 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc----hhHHHHHHHHHHH
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG----VGGMILAAKYARE 389 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~----~~g~i~~ir~a~e 389 (561)
.|++++++.+|+.+.. + +++++. + .+.+.+..+||||+|||+-+.. .......++.+++
T Consensus 23 ~~Yv~~l~~aG~~vvp---i-~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~ 85 (273)
T cd01747 23 ASYVKFLESAGARVVP---I-WINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALE 85 (273)
T ss_pred HHHHHHHHHCCCeEEE---E-EeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHH
Confidence 3789999999998643 2 233211 0 1235578999999999974421 2333445566665
Q ss_pred cC-----CCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcC---CCc
Q 008567 390 NN-----IPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQT---PDC 461 (561)
Q Consensus 390 ~~-----iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~---~~s 461 (561)
.+ +|+||||||||+|+.++|+++..+.. . ...|.. .++.+.+ ++.
T Consensus 86 ~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~-----------------~~~~~~-----~~l~~t~~~~~s~ 138 (273)
T cd01747 86 RNDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----T-----------------EATNSA-----LPLNFTEDALQSR 138 (273)
T ss_pred hhhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----C-----------------ccccce-----EEEEEccccccCh
Confidence 43 89999999999999999876421111 0 011211 2334332 123
Q ss_pred ccccccCC-----ceeEEeeeeeeeeeCccccc---ccccCCeEEEEEeCC--CC-eEEEEEeCCCCcEEEEcccCCCCC
Q 008567 462 VTSKLYRN-----AEYVDERHRHRYEVNPEAIG---VLEEAGLKFVGKDET--GK-RMEILELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 462 ~l~~iyg~-----~~~I~~~h~HrY~vn~~~v~---~le~~gl~v~a~~~d--g~-~vE~ie~~~~p~~~GvQFHPE~~~ 530 (561)
++..+... ......+|+|+|.++++... .| ...+++++.+.| |. +++++++.++| ++|+|||||++.
T Consensus 139 lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~ 216 (273)
T cd01747 139 LFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNA 216 (273)
T ss_pred hhhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCc-eEEEecCCCccc
Confidence 33333100 01123488999999876543 23 345788888755 43 67999999999 899999999987
Q ss_pred CCC
Q 008567 531 RPG 533 (561)
Q Consensus 531 ~p~ 533 (561)
...
T Consensus 217 few 219 (273)
T cd01747 217 FEW 219 (273)
T ss_pred ccc
Confidence 644
No 62
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.81 E-value=5.2e-19 Score=177.53 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=121.0
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
+||+|++ ++.++.++.++|+++|+++.. +.. + +.|.++|||||||||++.
T Consensus 2 m~igVLa----~qG~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA----LQGSFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe----CCCchHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 5899994 444568999999999987643 222 1 567899999999998753
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh-c-----ccccccccCCcCCCCCCCCCceeEecCCCCcccCCcc
Q 008567 376 G---VGGMILAAKYARENNIPYLGICLGMQISVIEF-A-----RSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGST 446 (561)
Q Consensus 376 ~---~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~-g-----~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~ 446 (561)
. ..++.+.++.+.+.++|+||||+|||+|+-.. + ...+|.-|..... .-....+..+-+..+.+|+|||
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 1 13577888888888999999999999997653 1 1112221211111 0123344454334467999997
Q ss_pred ccc-CceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCC--CeEEEEEeCCCCcEEEEc
Q 008567 447 MRL-GSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETG--KRMEILELPSHPFYVGVQ 523 (561)
Q Consensus 447 mrl-G~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg--~~vE~ie~~~~p~~~GvQ 523 (561)
.-- ...+..+... +.+... + ..+ +.-|+|.++++.... ..++++.| ..+.+++ +.+++|+|
T Consensus 132 ~~~~~~~~~vFira-p~i~~~-~--~~v--~~l~sy~~~~~~~~~-------~~a~~~y~~~~~~~aV~---qgnvlatq 195 (248)
T PLN02832 132 EGGPETFRAVFIRA-PAILSV-G--PGV--EVLAEYPLPSEKALY-------SSSTDAEGRDKVIVAVK---QGNLLATA 195 (248)
T ss_pred cccccccceEEecC-CceEeC-C--CcE--EEEEEeccccccccc-------ccccccccCCceEEEEE---eCCEEEEE
Confidence 320 1122223333 222111 1 222 456888765432111 12222222 1244444 33499999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHH
Q 008567 524 FHPEFKSRPGRPSALFLGLILAATK 548 (561)
Q Consensus 524 FHPE~~~~p~~~~~LF~~Fi~aa~~ 548 (561)
||||+++.. .++++|++.+..
T Consensus 196 FHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 196 FHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred ccCccCCcc----HHHHHHHHHHHH
Confidence 999999886 788889888765
No 63
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.81 E-value=5.2e-19 Score=177.49 Aligned_cols=132 Identities=21% Similarity=0.247 Sum_probs=94.7
Q ss_pred hccCCCeEEEcCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeE
Q 008567 359 TLRNAECVLVPGGFGDR-----GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVI 433 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~ 433 (561)
.+.++|||||+||+.+. -.....+.++.+.+.++|+||||+|||+|+.++|++|..-
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~------------------ 112 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYN------------------ 112 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccC------------------
Confidence 45789999999998753 1355678899999999999999999999999999987320
Q ss_pred ecCCCCcccCCcccccCceeEEEcCC---CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEE
Q 008567 434 FMPEGSRTHMGSTMRLGSRRTLFQTP---DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEI 510 (561)
Q Consensus 434 lm~~~~~~~~G~~mrlG~~~v~l~~~---~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ 510 (561)
+ .|+ ..|.+++.+.+. ++++..+. .... ..+.|++.| ..+ +.|++++|.++++. +++
T Consensus 113 --~------~g~--e~G~~~v~~~~~~~~~~l~~~~~-~~~~--v~~~H~d~v-----~~l-p~~~~~la~s~~~~-iqa 172 (237)
T PRK09065 113 --P------AGR--ESGTVTVELHPAAADDPLFAGLP-AQFP--AHLTHLQSV-----LRL-PPGAVVLARSAQDP-HQA 172 (237)
T ss_pred --C------CCC--ccceEEEEEccccccChhhhcCC-ccCc--Eeeehhhhh-----hhC-CCCCEEEEcCCCCC-eeE
Confidence 0 011 134456766542 23444432 2333 355676654 334 78999999998887 999
Q ss_pred EEeCCCCcEEEEcccCCCCC
Q 008567 511 LELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 511 ie~~~~p~~~GvQFHPE~~~ 530 (561)
+++.+ + ++|+|||||++.
T Consensus 173 ~~~~~-~-i~gvQfHPE~~~ 190 (237)
T PRK09065 173 FRYGP-H-AWGVQFHPEFTA 190 (237)
T ss_pred EEeCC-C-EEEEEeCCcCCH
Confidence 99975 3 899999999863
No 64
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.80 E-value=4.6e-19 Score=172.99 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=122.4
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcC-ceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHAC-IACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag-~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~- 375 (561)
.+|.|+ ++++- ...-|-+.++..| ....+ ++|..+.+ .....++|||||+||+.+.
T Consensus 2 ~~ilIl-d~g~q--~~~li~r~~re~g~v~~e~---~~~~~~~~----------------~~~~~~~~giIlsGgp~sv~ 59 (198)
T COG0518 2 RKILIL-DFGGQ--YLGLIARRLRELGYVYSEI---VPYTGDAE----------------ELPLDSPDGIIISGGPMSVY 59 (198)
T ss_pred cEEEEE-eCCCc--HhHHHHHHHHHcCCceEEE---EeCCCCcc----------------cccccCCCEEEEcCCCCCCc
Confidence 368888 77542 1245888899998 44443 23332211 0123467999999999653
Q ss_pred --c--hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCc
Q 008567 376 --G--VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGS 451 (561)
Q Consensus 376 --~--~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~ 451 (561)
. .....+.|+.+...++|+||||+|||+|+.++|++|.. +... .+|.
T Consensus 60 ~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~--------------------------E~G~ 110 (198)
T COG0518 60 DEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKR--------------------------EIGW 110 (198)
T ss_pred cccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCC--------------------------ccce
Confidence 2 34455566665555667999999999999999999832 0001 2344
Q ss_pred eeEEEcC-CCcccccccCCce-eEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCC
Q 008567 452 RRTLFQT-PDCVTSKLYRNAE-YVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFK 529 (561)
Q Consensus 452 ~~v~l~~-~~s~l~~iyg~~~-~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~ 529 (561)
.++.+.+ .+.++..+.. .. .++ ++|+ +.+.++ +.|++++|.+++.. ++++++. .+ ++|+|||||.+
T Consensus 111 ~~v~~~~~~~~l~~gl~~-~~~~v~--~sH~-----D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~ 178 (198)
T COG0518 111 TPVELTEGDDPLFAGLPD-LFTTVF--MSHG-----DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVT 178 (198)
T ss_pred EEEEEecCccccccCCcc-ccCccc--cchh-----CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEe
Confidence 5777763 2245666542 33 254 5555 666666 89999999988887 9999998 55 89999999999
Q ss_pred CCCCCchHHHHHHHH
Q 008567 530 SRPGRPSALFLGLIL 544 (561)
Q Consensus 530 ~~p~~~~~LF~~Fi~ 544 (561)
. .....++++|..
T Consensus 179 ~--~~~~~~l~nf~~ 191 (198)
T COG0518 179 H--EYGEALLENFAH 191 (198)
T ss_pred H--HHHHHHHHHhhh
Confidence 8 235678888874
No 65
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.80 E-value=1e-18 Score=168.69 Aligned_cols=138 Identities=21% Similarity=0.255 Sum_probs=99.1
Q ss_pred HhccCCCeEEEcCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCce
Q 008567 358 ETLRNAECVLVPGGFGDR---G---VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPV 431 (561)
Q Consensus 358 ~~l~~~DGIilpGG~G~~---~---~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~v 431 (561)
..+.++||||+|||+.+. . .....+.++++.++++|+||||+|||+|+.++|++|...+
T Consensus 42 ~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~--------------- 106 (188)
T cd01741 42 PDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNP--------------- 106 (188)
T ss_pred CCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCC---------------
Confidence 357899999999998754 1 3567888999999999999999999999999998873210
Q ss_pred eEecCCCCcccCCcccccCceeEEEcCCC---cccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeE
Q 008567 432 VIFMPEGSRTHMGSTMRLGSRRTLFQTPD---CVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRM 508 (561)
Q Consensus 432 i~lm~~~~~~~~G~~mrlG~~~v~l~~~~---s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~v 508 (561)
.| ...|.+++.+.+.. .++..+. ..+..++.|++.|. .+ +.+++++|.++++. +
T Consensus 107 -----------~~--~~~g~~~v~~~~~~~~~~l~~~~~---~~~~v~~~H~~~v~-----~l-p~~~~~la~~~~~~-v 163 (188)
T cd01741 107 -----------KG--WEIGWFPVTLTEAGKADPLFAGLP---DEFPVFHWHGDTVV-----EL-PPGAVLLASSEACP-N 163 (188)
T ss_pred -----------Cc--ceeEEEEEEeccccccCchhhcCC---CcceEEEEeccChh-----hC-CCCCEEeecCCCCC-c
Confidence 01 11234566665431 2222221 23344677887764 24 77899999998887 9
Q ss_pred EEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHH
Q 008567 509 EILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLI 543 (561)
Q Consensus 509 E~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi 543 (561)
++++.. .+++|+||||| ..+|.+|+
T Consensus 164 ~~~~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 164 QAFRYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred ceEEec--CCEEEEccCch--------HHHHhhhC
Confidence 999987 34999999999 56777763
No 66
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=1.7e-18 Score=168.15 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=115.2
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc-
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG- 376 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~- 376 (561)
++|+|+ .. +..|.|..++|+.+|+.+.. +... +.+.++||||+|||++...
T Consensus 2 m~~~i~-~~---~g~~~~~~~~l~~~g~~~~~------~~~~------------------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVL-AL---QGAVREHLAALEALGAEAVE------VRRP------------------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEE-Ec---ccCHHHHHHHHHHCCCEEEE------eCCh------------------hHhccCCEEEECCCChHHHH
Confidence 578888 33 34468889999999987644 2221 4578899999999986531
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCce
Q 008567 377 ----VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSR 452 (561)
Q Consensus 377 ----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~ 452 (561)
.....+.++.+.++++|+||||+|+|+|+.++|+.. . .+.. -.+..+.. ...|+. .|..
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~--~-----~~lg-~~~~~v~~-------~~~g~~--~g~~ 116 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYE--Q-----EHLG-LLDITVRR-------NAFGRQ--VDSF 116 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCC--C-----Ccee-eEEEEEEE-------ccCCCc--eeeE
Confidence 133457888888999999999999999999887631 0 0100 00000100 011221 1111
Q ss_pred eEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCC
Q 008567 453 RTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRP 532 (561)
Q Consensus 453 ~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p 532 (561)
... .++..+ + ..+..++.|+++| ..+ +.+++++|.++ +. +++++. . +++|+|||||++..
T Consensus 117 ~~~-----~~~~~~-~--~~~~~~~~H~d~v-----~~l-p~~~~vlA~~~-~~-~~~~~~--~-~~~g~QfHPE~~~~- 176 (189)
T PRK13525 117 EAE-----LDIKGL-G--EPFPAVFIRAPYI-----EEV-GPGVEVLATVG-GR-IVAVRQ--G-NILATSFHPELTDD- 176 (189)
T ss_pred Eec-----ccccCC-C--CCeEEEEEeCcee-----ecc-CCCcEEEEEcC-CE-EEEEEe--C-CEEEEEeCCccCCC-
Confidence 111 222222 1 1334577787655 344 67899999875 33 667653 2 49999999999865
Q ss_pred CCchHHHHHHHHHHH
Q 008567 533 GRPSALFLGLILAAT 547 (561)
Q Consensus 533 ~~~~~LF~~Fi~aa~ 547 (561)
..||++|++.|.
T Consensus 177 ---~~~~~~f~~~~~ 188 (189)
T PRK13525 177 ---TRVHRYFLEMVK 188 (189)
T ss_pred ---chHHHHHHHHhh
Confidence 589999999875
No 67
>PRK05665 amidotransferase; Provisional
Probab=99.80 E-value=2.5e-18 Score=172.84 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=97.5
Q ss_pred hccCCCeEEEcCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeE
Q 008567 359 TLRNAECVLVPGGFGDR-----GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVI 433 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~ 433 (561)
.+.++|||||+||+.+. -+....+.++.+.++++|+||||+|||+|+.++|++|..-
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~------------------ 115 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA------------------ 115 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC------------------
Confidence 46789999999998653 2366778889999999999999999999999999998320
Q ss_pred ecCCCCcccCCcccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEe
Q 008567 434 FMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILEL 513 (561)
Q Consensus 434 lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~ 513 (561)
..|+. .|.+.+.+.+...++.... . .+...+.|+ +.+..| +.|++++|.++.+. +++++.
T Consensus 116 --------~~G~e--~G~~~~~~~~~~~~~~~~~-~--~~~~~~~H~-----D~V~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 116 --------SQGWG--VGIHRYQLAAHAPWMSPAV-T--ELTLLISHQ-----DQVTAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred --------CCCcc--cceEEEEecCCCccccCCC-C--ceEEEEEcC-----CeeeeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 01332 3445666655433443332 2 233456676 444456 88999999998887 999998
Q ss_pred CCCCcEEEEcccCCCCCCC
Q 008567 514 PSHPFYVGVQFHPEFKSRP 532 (561)
Q Consensus 514 ~~~p~~~GvQFHPE~~~~p 532 (561)
.++ ++|+|||||++...
T Consensus 176 ~~~--~~g~QfHPE~~~~~ 192 (240)
T PRK05665 176 GDQ--VLCFQGHPEFVHDY 192 (240)
T ss_pred CCC--EEEEecCCcCcHHH
Confidence 754 89999999998764
No 68
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.79 E-value=3.2e-18 Score=167.33 Aligned_cols=190 Identities=17% Similarity=0.247 Sum_probs=114.1
Q ss_pred EEEEEeccCCCcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 299 RIAMVGKYVGLADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
||||+ -+-...+.| .++.++|+.+|..+.+ .++.. + +.+.++|+|+||||++..
T Consensus 2 ~i~vl-~~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~-----------~-------~~l~~~d~iii~GG~~~~~~ 58 (200)
T PRK13527 2 KIGVL-ALQGDVEEHIDALKRALDELGIDGEV----VEVRR-----------P-------GDLPDCDALIIPGGESTTIG 58 (200)
T ss_pred EEEEE-EECCccHHHHHHHHHHHHhcCCCeEE----EEeCC-----------h-------HHhccCCEEEECCCcHHHHH
Confidence 67777 343333333 3677888888876544 23321 1 457789999999998764
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc-ccccccCCcCCCCCCCCCceeEecCCC-CcccCCcccccC
Q 008567 376 ---GVGGMILAAKYARENNIPYLGICLGMQISVIEFARS-VLGLKRANSNEFDSETPNPVVIFMPEG-SRTHMGSTMRLG 450 (561)
Q Consensus 376 ---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~-v~gl~da~s~Ef~~~~~~~vi~lm~~~-~~~~~G~~mrlG 450 (561)
...+..+.++.+.++++|+||||+|||+|+.++|+. +.+ ... +..-+++-. .....|+.. +
T Consensus 59 ~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~---~~~---------~~lG~~~~~v~~~~~g~~~--~ 124 (200)
T PRK13527 59 RLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTK---TEQ---------PLLGLMDVTVKRNAFGRQR--D 124 (200)
T ss_pred HHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCC---CCC---------ceeeeeEEEEeeccccCcc--c
Confidence 223568889988889999999999999999998863 211 000 001111000 000111110 0
Q ss_pred ceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCC
Q 008567 451 SRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 451 ~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~ 530 (561)
..... .++..+ ++ .+...+.|++.+ ..+ +.+++++|.++++ +++++. . +++|+|||||.+.
T Consensus 125 ~~~~~-----~~~~~~-~~--~~~~~~~H~~~v-----~~l-p~~~~~la~~~~~--~~a~~~--~-~~~g~QfHPE~~~ 185 (200)
T PRK13527 125 SFEAE-----IDLSGL-DG--PFHAVFIRAPAI-----TKV-GGDVEVLAKLDDR--IVAVEQ--G-NVLATAFHPELTD 185 (200)
T ss_pred cEEEe-----Eecccc-CC--cceEEEEccccc-----ccc-CCCeEEEEEECCE--EEEEEE--C-CEEEEEeCCCCCC
Confidence 00000 112222 11 233355676555 334 6789999988876 346653 3 4999999999875
Q ss_pred CCCCchHHHHHHHHHHHH
Q 008567 531 RPGRPSALFLGLILAATK 548 (561)
Q Consensus 531 ~p~~~~~LF~~Fi~aa~~ 548 (561)
. ..||++|++++..
T Consensus 186 ~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 186 D----TRIHEYFLKKVKG 199 (200)
T ss_pred C----CHHHHHHHHHHhc
Confidence 5 5899999998754
No 69
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.79 E-value=3.2e-18 Score=189.07 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=127.4
Q ss_pred CceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 296 NSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 296 ~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
...+|+|| ||+.-. ..|+.++|+.+|+++.+ +.. | +.+.++|+||||||....
T Consensus 5 ~~~~i~ii-DyG~GN--~~sl~~al~~~G~~v~~------v~~-----------~-------~~l~~~D~lIlpG~gs~~ 57 (538)
T PLN02617 5 ADSEVTLL-DYGAGN--VRSVRNAIRHLGFTIKD------VQT-----------P-------EDILNADRLIFPGVGAFG 57 (538)
T ss_pred CCCeEEEE-ECCCCC--HHHHHHHHHHCCCeEEE------ECC-----------h-------hhhccCCEEEECCCCCHH
Confidence 34799999 895221 38999999999987633 332 1 457899999999854321
Q ss_pred c------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--ccccccccCCcCCCCCCCCCceeEec--CCCCcccCCc
Q 008567 376 G------VGGMILAAKYARENNIPYLGICLGMQISVIEFA--RSVLGLKRANSNEFDSETPNPVVIFM--PEGSRTHMGS 445 (561)
Q Consensus 376 ~------~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g--~~v~gl~da~s~Ef~~~~~~~vi~lm--~~~~~~~~G~ 445 (561)
. ..+..+.++.+.+.++|+||||+|||+|+.++. +.+.|+. ..+..|..+- +..+.+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg---------~l~G~v~~~~~~~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLG---------VIPGVVGRFDSSNGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcc---------cccceEEECCccCCCCCCeecc
Confidence 1 134677888888899999999999999987641 1222221 0111222210 0124678888
Q ss_pred ccccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCC-CCeEEEEEeCCCCcEEEEcc
Q 008567 446 TMRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDET-GKRMEILELPSHPFYVGVQF 524 (561)
Q Consensus 446 ~mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~d-g~~vE~ie~~~~p~~~GvQF 524 (561)
+ ++...++++++..+ + ... .+|+|+|.+.+.. ..+..+.+..+. +.++++++.. +++|+||
T Consensus 129 ~------~V~~~~~spL~~~l-~-~~~--vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQF 190 (538)
T PLN02617 129 N------ALQITKDSELLDGV-G-GRH--VYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQF 190 (538)
T ss_pred e------EEEecCCChhHhcC-C-CcE--EEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEEc
Confidence 6 55565565665555 3 233 3688999864311 122334444432 2358999863 4999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhh
Q 008567 525 HPEFKSRPGRPSALFLGLILAATKQL 550 (561)
Q Consensus 525 HPE~~~~p~~~~~LF~~Fi~aa~~~~ 550 (561)
|||++.. ....+|++|++.....+
T Consensus 191 HPE~s~~--~G~~L~~nFl~~~~~~~ 214 (538)
T PLN02617 191 HPEKSGA--TGLSILRRFLEPKSSAT 214 (538)
T ss_pred CCccCch--hHHHHHHHHHHhhhhhh
Confidence 9999872 45799999998877544
No 70
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.79 E-value=7.9e-18 Score=169.16 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=115.9
Q ss_pred ceEEEEEeccC-CCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 297 SVRIAMVGKYV-GLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 297 ~~~Iavvgky~-~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
..+|.++-.+. +.. .++.+.|+..|.++.+. . ...++ ..| +.+.++||+||+||+++.
T Consensus 7 ~~~vlvi~h~~~~~~---g~l~~~l~~~g~~~~v~---~-~~~~~-------~~p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 7 KRPVLIVLHQERSTP---GRVGQLLQERGYPLDIR---R-PRLGD-------PLP-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CceEEEEecCCCCCC---hHHHHHHHHCCCceEEE---e-ccCCC-------CCC-------CcccccCEEEEECCCCCC
Confidence 46888885553 222 56888899999877652 1 11111 011 357789999999998764
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccC
Q 008567 376 G-----VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLG 450 (561)
Q Consensus 376 ~-----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG 450 (561)
. ....++.|+.+.+.++|+||||+|||+|+.++|++|...+ .|+ ...|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~--------------------------~G~-~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHP--------------------------DGR-VEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCC--------------------------CCC-Cccc
Confidence 2 2456788888899999999999999999999999984210 011 1233
Q ss_pred ceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCC
Q 008567 451 SRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFK 529 (561)
Q Consensus 451 ~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~ 529 (561)
.+++.+.+....+... ... .+|.|++.+ .+ +.++.++|.++++. ++++++.+ + ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~~~--~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~-~-v~g~QfHPE~~ 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---PEM--VYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGD-N-AWGLQFHPEVT 182 (239)
T ss_pred eEEeEECCCcccccCC---CCE--EEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCC-C-EEEEeeCccCC
Confidence 4567665543333222 112 356777542 34 77899999998887 99999975 3 89999999998
No 71
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.78 E-value=2.9e-18 Score=167.27 Aligned_cols=187 Identities=21% Similarity=0.207 Sum_probs=110.4
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG--- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~--- 376 (561)
|+|+ ||+.-. -.++.++|+..|+++.+ +..+ +.++++|+||+||+ |++.
T Consensus 1 ~~~~-~~~~gn--~~~l~~~l~~~g~~v~v------~~~~------------------~~l~~~d~lii~G~-~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVGN--LGSVKRALKRVGAEPVV------VKDS------------------KEAELADKLILPGV-GAFGAAM 52 (196)
T ss_pred CEEE-ecCCcH--HHHHHHHHHHCCCcEEE------EcCH------------------HHhccCCEEEECCC-CCHHHHH
Confidence 5778 774221 26899999999987655 2211 45678999999884 3321
Q ss_pred --hhHH-HHHH-HHHHHcCCCEEEEehhHHHHHHHh--cccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccC
Q 008567 377 --VGGM-ILAA-KYARENNIPYLGICLGMQISVIEF--ARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLG 450 (561)
Q Consensus 377 --~~g~-i~~i-r~a~e~~iPvLGICLGmQLL~ie~--g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG 450 (561)
+... .+.+ +.+.+.++|+||||+|||+|+.++ ++++-++. - ....|.. ++..+.+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg-----~----~~~~v~~-~~~~~~~~~g~~---- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLG-----L----IKGNVVK-LEARKVPHMGWN---- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcc-----e----eeEEEEE-CCCCCCCcccCe----
Confidence 1111 3344 777788999999999999998773 11111110 0 0011111 111123455554
Q ss_pred ceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCC
Q 008567 451 SRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 451 ~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~ 530 (561)
.+....+++++..+. +. ...+++|+|.+.+.. +. +++.++++. .........+ +||+|||||+..
T Consensus 119 --~~~~~~~~~l~~~l~-~~--~~v~~~Hs~~v~~~~-------~~-~~a~~~~g~-~~~~~~~~~~-i~GvQFHPE~~~ 183 (196)
T TIGR01855 119 --EVHPVKESPLLNGID-EG--AYFYFVHSYYAVCEE-------EA-VLAYADYGE-KFPAAVQKGN-IFGTQFHPEKSG 183 (196)
T ss_pred --eeeeCCCChHHhCCC-CC--CEEEEECeeEecCCC-------Cc-EEEEEcCCc-EEEEEEecCC-EEEEECCCccCc
Confidence 344444445665553 22 334788999886421 22 456556655 3333444555 899999999874
Q ss_pred CCCCchHHHHHHHHH
Q 008567 531 RPGRPSALFLGLILA 545 (561)
Q Consensus 531 ~p~~~~~LF~~Fi~a 545 (561)
.....|+++|+++
T Consensus 184 --~~g~~ll~~f~~~ 196 (196)
T TIGR01855 184 --KTGLKLLENFLEL 196 (196)
T ss_pred --HhHHHHHHHHHhC
Confidence 3568999999863
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.77 E-value=6.1e-18 Score=168.71 Aligned_cols=192 Identities=23% Similarity=0.358 Sum_probs=121.7
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
+||+|+ +|.+.. .-.++.++|+.+|+.+.. .|... ..+.++|+|+||||+...
T Consensus 1 ~~v~Vl-~~~G~n-~~~~~~~al~~~G~~~~~----i~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGTN-CDRDTVYALRLLGVDAEI----VWYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCcC-cHHHHHHHHHHCCCeEEE----EecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 479999 784332 115788999999987654 23221 235789999999997431
Q ss_pred -------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcc
Q 008567 376 -------GVGGMILAAKYARENNIPYLGICLGMQISVIE--FARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGST 446 (561)
Q Consensus 376 -------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie--~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~ 446 (561)
......+.++.+.+.++|+||||.|+|+|+.+ +++.+. + ..+.+
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~--~-n~~~~------------------------ 108 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALL--P-NDSLR------------------------ 108 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCcee--e-cCCCc------------------------
Confidence 12346677888888999999999999999764 333221 0 01111
Q ss_pred cccCce--eEEEcCCCcccccccCCceeEEe--ee-eeeeeeCcccccccccCCeEEEEE-----------eCCCC--eE
Q 008567 447 MRLGSR--RTLFQTPDCVTSKLYRNAEYVDE--RH-RHRYEVNPEAIGVLEEAGLKFVGK-----------DETGK--RM 508 (561)
Q Consensus 447 mrlG~~--~v~l~~~~s~l~~iyg~~~~I~~--~h-~HrY~vn~~~v~~le~~gl~v~a~-----------~~dg~--~v 508 (561)
++.. .+++.++.+.+.+-+.....++. .| .|||.++++.++.|++.+..+..+ +++|. .|
T Consensus 109 --~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i 186 (227)
T TIGR01737 109 --FICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNI 186 (227)
T ss_pred --eEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHH
Confidence 1111 22332332333322221222322 34 458999988887786666544333 35652 58
Q ss_pred EEEEeCCCCcEEEEcccCCCCC----CCCCchHHHHHHHH
Q 008567 509 EILELPSHPFYVGVQFHPEFKS----RPGRPSALFLGLIL 544 (561)
Q Consensus 509 E~ie~~~~p~~~GvQFHPE~~~----~p~~~~~LF~~Fi~ 544 (561)
+++++++.+ ++|+|||||+.. .+.++..||++|++
T Consensus 187 ~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 187 AGIVNERGN-VLGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred cccCCCCCC-EEEEecCchhhcccccCCcccHHHHHHHHh
Confidence 889999988 899999999984 23367899999975
No 73
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.77 E-value=1e-17 Score=167.76 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=113.5
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC---
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR--- 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~--- 375 (561)
+|.|+ ..... ..-.++.++|+..|..+.+. .. ...++. ...+.++|||||+||+...
T Consensus 4 ~ilvi-qh~~~-e~~g~i~~~L~~~g~~~~v~---~~-~~~~~~--------------~~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAI-RHVAF-EDLGSFEQVLGARGYRVRYV---DV-GVDDLE--------------TLDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEE-ECCCC-CCChHHHHHHHHCCCeEEEE---ec-CCCccC--------------CCCccCCCEEEECCCCCCCCCC
Confidence 56666 44222 12257899999999876551 11 111110 0235689999999997542
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCc
Q 008567 376 ----GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGS 451 (561)
Q Consensus 376 ----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~ 451 (561)
-.....+.++.+.+.++|+||||+|||+|+.++|++|.. . ....+|.
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~--~---------------------------~~~e~G~ 114 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP--G---------------------------GQKEIGW 114 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec--C---------------------------CCCeEeE
Confidence 235678889999999999999999999999999998831 0 0112344
Q ss_pred eeEEEcCC--CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCC
Q 008567 452 RRTLFQTP--DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFK 529 (561)
Q Consensus 452 ~~v~l~~~--~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~ 529 (561)
.++.+.+. ...+..+. ..+...|+|++.+ .+ +.|.+.+|.++... ++++...+ + ++|+|||||++
T Consensus 115 ~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~------~l-P~ga~~La~s~~~~-~qaf~~g~-~-~~g~QfHpE~~ 181 (234)
T PRK07053 115 APLTLTDAGRASPLRHLG---AGTPVLHWHGDTF------DL-PEGATLLASTPACR-HQAFAWGN-H-VLALQFHPEAR 181 (234)
T ss_pred EEEEEeccccCChhhcCC---CcceEEEEeCCEE------ec-CCCCEEEEcCCCCC-eeEEEeCC-C-EEEEeeCccCC
Confidence 56665442 12223332 1233467787654 23 77899999988876 89999854 3 89999999998
Q ss_pred CC
Q 008567 530 SR 531 (561)
Q Consensus 530 ~~ 531 (561)
+.
T Consensus 182 ~~ 183 (234)
T PRK07053 182 ED 183 (234)
T ss_pred HH
Confidence 65
No 74
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.77 E-value=7.3e-18 Score=169.73 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=93.2
Q ss_pred hccCCCeEEEcCCCCCCch---------h----HHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCC
Q 008567 359 TLRNAECVLVPGGFGDRGV---------G----GMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDS 425 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~~~---------~----g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~ 425 (561)
.+.++|||||+||+.+... . ....+++.+.++++|+||||+|||+|+.++|++|.. .
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~---~------- 117 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR---T------- 117 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec---C-------
Confidence 4678999999999865411 1 123456667789999999999999999999998832 0
Q ss_pred CCCCceeEecCCCCcccCCcccccCceeEEEcCC---CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEe
Q 008567 426 ETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTP---DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKD 502 (561)
Q Consensus 426 ~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~---~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~ 502 (561)
.|+ .+|.+++.+.+. ++++..+. ..+...|.|++.| ..+ +.|++++|.+
T Consensus 118 -----------------~g~--e~G~~~v~l~~~g~~~~l~~~~~---~~~~~~~~H~d~V-----~~l-p~~~~vlA~s 169 (242)
T PRK07567 118 -----------------YGE--PVGAVTVSLTDAGRADPLLAGLP---DTFTAFVGHKEAV-----SAL-PPGAVLLATS 169 (242)
T ss_pred -----------------CCC--cCccEEEEECCccCCChhhcCCC---CceEEEeehhhhh-----hhC-CCCCEEEEeC
Confidence 011 134456766542 23444443 1344467787655 334 7899999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 503 ETGKRMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 503 ~dg~~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
+++. ++++++.++ ++|+|||||++..
T Consensus 170 ~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 170 PTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 8887 999998653 8999999999765
No 75
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.74 E-value=4e-17 Score=157.86 Aligned_cols=175 Identities=17% Similarity=0.259 Sum_probs=108.4
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC---
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR--- 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~--- 375 (561)
||+|+ .++.+|.+..++|+++|+++.. +.+. +.+.++|+|+||||++..
T Consensus 1 ~igvl----~~qg~~~e~~~~l~~~g~~~~~------v~~~------------------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVL----ALQGAVREHARALEALGVEGVE------VKRP------------------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEE----EccCCHHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCHHHHHH
Confidence 47777 2455578999999999987644 3331 457899999999998653
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---cccccCCcCCCCCCCCCceeEecCCCCcccCCcccccC
Q 008567 376 --GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSV---LGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLG 450 (561)
Q Consensus 376 --~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v---~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG 450 (561)
...+....++.+.+.++|+||||+|||+|+-++.... +|+-++ .+. ....|+ ..+
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~-----------~v~-------~~~~g~--~~~ 112 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDM-----------TVE-------RNAYGR--QVD 112 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEE-----------EEE-------eeccCC--ccc
Confidence 1235677888888999999999999999988762110 010000 000 001121 122
Q ss_pred ceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCC
Q 008567 451 SRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKS 530 (561)
Q Consensus 451 ~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~ 530 (561)
...+.+... .+ + ......-..|. +.+..+ +.+++++|.+++ . +++++.. + ++|+|||||.+.
T Consensus 113 s~~~~l~~~-----~~-~-~~~~~~~~~h~-----~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~ 174 (184)
T TIGR03800 113 SFEAEVDIK-----GV-G-DDPITGVFIRA-----PKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTD 174 (184)
T ss_pred cEEEEeecc-----cC-C-CCcceEEEEcC-----CCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCC
Confidence 333333221 00 0 00011112232 566666 889999999654 4 7788644 3 899999999974
Q ss_pred CCCCchHHHHHHH
Q 008567 531 RPGRPSALFLGLI 543 (561)
Q Consensus 531 ~p~~~~~LF~~Fi 543 (561)
. ..+|+.|+
T Consensus 175 ~----~~~~~~f~ 183 (184)
T TIGR03800 175 D----HRVHEYFL 183 (184)
T ss_pred C----chHHHHhh
Confidence 4 37888886
No 76
>PRK00784 cobyric acid synthase; Provisional
Probab=99.73 E-value=7.1e-17 Score=177.85 Aligned_cols=307 Identities=20% Similarity=0.262 Sum_probs=181.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccc---------cCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVD---------LDL 71 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~d---------ldl 71 (561)
||-|||| |+-|++||.++++.|++.|+++|++|.++|. .+|+- +.++.+||.|.+ +.+
T Consensus 2 ~~~ifIt-GT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--------v~~~~----~~~~~~dg~~~~Da~~l~~~~~~~ 68 (488)
T PRK00784 2 AKALMVQ-GTASDAGKSTLVAGLCRILARRGYRVAPFKA--------QNMSL----NSAVTADGGEIGRAQALQAEAAGV 68 (488)
T ss_pred CceEEEE-eCCCCCcHHHHHHHHHHHHHHCCCeEecccc--------hhccc----cceECCCCCeeHHHHHHHHHhCCC
Confidence 6889999 9999999999999999999999999999998 77776 677777876631 122
Q ss_pred cccccccCCCCCCCCc-----ccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEe
Q 008567 72 GNYERFLDVRLTKNNN-----ITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIE 146 (561)
Q Consensus 72 g~yerf~~~~l~~~~~-----~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E 146 (561)
-.++.++++.+++.+. .-+|+...++-.+++. .+.. ...+.|++.+.+++ .++|++|||
T Consensus 69 ~~~~~i~P~~~~~~sp~~a~~~~~g~~~~~l~a~~~~---~~~~-----~~~~~I~~~~~~l~--------~~~D~vIVE 132 (488)
T PRK00784 69 EPSVDMNPVLLKPQSDRGSQVIVQGKPVGNMDARDYH---DYKP-----RLLEAVLESLDRLA--------AEYDVVVVE 132 (488)
T ss_pred CchhccCCEEecCCCCCcceEEEcCccccccCHHHHh---hcch-----hhHHHHHHHHHHHH--------hcCCEEEEE
Confidence 2355677777766553 3456665553332221 1211 24788899998886 578999999
Q ss_pred cCCcccc--c--cccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccc----hHHHHH-hCCCcccEEEEe
Q 008567 147 LGGTVGD--I--ESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQH----SVRELR-ALGLTPHLLACR 217 (561)
Q Consensus 147 ~gGtvgd--i--e~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~----sv~~l~-s~Gi~pd~iI~R 217 (561)
+.|.+-. + .+.-.++-++++... ++. +... ..-+ +-+ +++.|+ ..|+..-++|+-
T Consensus 133 GaGg~~~~~L~~~~~~~~dlak~l~~P-----VIL-------V~~~--~~g~--~~~~i~~~~~~l~~~~~~~i~GvI~N 196 (488)
T PRK00784 133 GAGSPAEINLRDRDIANMGFAEAADAP-----VIL-------VADI--DRGG--VFASLVGTLALLPPEERARVKGFIIN 196 (488)
T ss_pred CCCCccccCcccCCchhHHHHHHcCCC-----EEE-------EEeC--CcCc--HHHHHHHHHHhcChhhCCcEEEEEEE
Confidence 8877642 1 012234444444322 222 1211 0000 011 112222 224667778864
Q ss_pred ecCCCC---chhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccCCCCChhHHHHHHhhhcCC
Q 008567 218 SAQPLL---ENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNL 294 (561)
Q Consensus 218 ~~~~l~---~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~~~ 294 (561)
.-.+-. .+..+.+...+.++.-++++.. +.. .+|. +..++ + +.. . + ...
T Consensus 197 ~v~~~~~~~~~~~~~l~~~~gipvLG~iP~~--~~L-~~~~----e~~~~-~-----~~~-----~---~-------~~~ 248 (488)
T PRK00784 197 KFRGDISLLEPGLDWLEELTGVPVLGVLPYL--DDL-RLPA----EDSLA-L-----LER-----A---A-------RAG 248 (488)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCC--cCC-CcCh----HHhcc-c-----hhc-----c---c-------cCC
Confidence 332211 1222224444555544443332 232 3333 11111 1 000 0 0 112
Q ss_pred CCceEEEEEeccCCCcccHHHHHHHHHH-cCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 295 KNSVRIAMVGKYVGLADSYLSVVKALLH-ACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY~Si~~aL~~-ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
...++|||+ +|..... | .-+++|+. +|+++. |+.+. +.+.++|+|+||||+.
T Consensus 249 ~~~~~i~v~-~~~~a~~-f-~nl~~l~~~~g~~v~------~~s~~------------------~~l~~~d~lilpGg~~ 301 (488)
T PRK00784 249 GGALRIAVI-RLPRISN-F-TDFDPLRAEPGVDVR------YVRPG------------------EPLPDADLVILPGSKN 301 (488)
T ss_pred CCceEEEEE-eCCCcCC-c-cChHHHhhcCCCeEE------EECCc------------------cccccCCEEEECCccc
Confidence 234799999 6643221 1 44778887 887653 34432 3466899999999985
Q ss_pred CCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 374 DRG------VGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 374 ~~~------~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
... ..++.+.++.+.+++.|+||||.|||+|+-.
T Consensus 302 ~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 302 TIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred hHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 421 1346778888888999999999999999765
No 77
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.9e-17 Score=171.47 Aligned_cols=196 Identities=21% Similarity=0.277 Sum_probs=126.5
Q ss_pred CceEEEEEeccCCCcccHHHHHHHHHHc-CceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccC---CCeEEEcCC
Q 008567 296 NSVRIAMVGKYVGLADSYLSVVKALLHA-CIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRN---AECVLVPGG 371 (561)
Q Consensus 296 ~~~~Iavvgky~~~~DaY~Si~~aL~~a-g~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~---~DGIilpGG 371 (561)
.++++.+|+.|++.. .++.++|..+ +....+.|...|..++ +|+.+.+ +|+|++.+|
T Consensus 13 ~rl~~LlID~YDSyT---fNiy~ll~~~~~vp~V~~vh~~~~~~d----------------~~~~l~q~~~FDaIVVgPG 73 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYT---FNIYQLLSTINGVPPVVIVHDEWTWED----------------AYHYLYQDVAFDAIVVGPG 73 (767)
T ss_pred hheeEEEEecccchh---hhHHHHHHHhcCCCcEEEEeccccCHH----------------HHHHHhhccccceEEecCC
Confidence 358999998885443 5889998665 4544444444455432 4455544 999999999
Q ss_pred CCCCchhHHHHHHHHHHH--cCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCccccc
Q 008567 372 FGDRGVGGMILAAKYARE--NNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRL 449 (561)
Q Consensus 372 ~G~~~~~g~i~~ir~a~e--~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrl 449 (561)
||.|....-+..+.+..+ +.+|+||||||||.|+++.|+.|.- ++ .+-.|.-
T Consensus 74 PG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n--------------------~p~HGrv--- 127 (767)
T KOG1224|consen 74 PGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---AN--------------------EPVHGRV--- 127 (767)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CC--------------------Cccccee---
Confidence 999954333434433333 3699999999999999999988731 11 0111110
Q ss_pred CceeEEEcCCCcccccccCC---ceeEEeeeeeeeeeCcccccccccCCeEEEEE--eCCCCeEEEEEeCCCCcEEEEcc
Q 008567 450 GSRRTLFQTPDCVTSKLYRN---AEYVDERHRHRYEVNPEAIGVLEEAGLKFVGK--DETGKRMEILELPSHPFYVGVQF 524 (561)
Q Consensus 450 G~~~v~l~~~~s~l~~iyg~---~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~--~~dg~~vE~ie~~~~p~~~GvQF 524 (561)
..+... +.-++.+++.+ ...+. | .|+..+|+.-++.+ .+.+. +++|.+++.+.+++.|| +|+||
T Consensus 128 --s~i~~~-~~~~f~gi~sg~~~~fK~~-R-YHSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPh-fG~qy 196 (767)
T KOG1224|consen 128 --SGIEHD-GNILFSGIPSGRNSDFKVV-R-YHSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPH-FGLQY 196 (767)
T ss_pred --eeEEec-CcEEEccCCCCCcccceeE-E-eEEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCc-cceee
Confidence 122221 11333334321 22232 4 38899997666543 23343 35566899999999996 99999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHH
Q 008567 525 HPEFKSRPGRPSALFLGLILAATK 548 (561)
Q Consensus 525 HPE~~~~p~~~~~LF~~Fi~aa~~ 548 (561)
|||...... +..||++|++.+..
T Consensus 197 HPES~~s~~-g~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 197 HPESIASTY-GSQLFKNFLDLTVN 219 (767)
T ss_pred ChHHhhhhh-hHHHHHHHHHhhcc
Confidence 999987765 57999999998854
No 78
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.72 E-value=6.8e-17 Score=149.60 Aligned_cols=195 Identities=19% Similarity=0.281 Sum_probs=131.4
Q ss_pred EEEEEeccCCCcccHHHHHHHH-HHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCCCCC
Q 008567 299 RIAMVGKYVGLADSYLSVVKAL-LHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGFGDR 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL-~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~G~~ 375 (561)
.|.+++.|+++. .++.++| -..|+.+.| ...++++- ++| .++++++++.|||.|
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V------yRNDeiTV--------------~El~~~NP~~LliSPGPG~P 76 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV------YRNDELTV--------------EELKRKNPRGLLISPGPGTP 76 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE------EecCcccH--------------HHHhhcCCCeEEecCCCCCC
Confidence 488888998876 7899998 556666554 12233321 223 589999999999999
Q ss_pred chhHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeE
Q 008567 376 GVGGM-ILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRT 454 (561)
Q Consensus 376 ~~~g~-i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v 454 (561)
...+. .++++++ ..++|+||||+|.|.|.-+||++|.. .-|. +++ |.+ .++
T Consensus 77 ~DsGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~H----------GK~-----S~i 128 (223)
T KOG0026|consen 77 QDSGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VMH----------GKS-----SMV 128 (223)
T ss_pred ccccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------eee----------ccc-----ccc
Confidence 75553 3455554 36899999999999999999999831 1111 110 111 011
Q ss_pred EEcC-C-CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCC
Q 008567 455 LFQT-P-DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRP 532 (561)
Q Consensus 455 ~l~~-~-~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p 532 (561)
.-.. + -.++..+.. ...+ .|+ |+.....+.++ ..-++++|+.+||- +++.+|+.+..+-|||||||..-+.
T Consensus 129 ~~D~~~~~G~f~g~~q-~~~V-~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIlte 201 (223)
T KOG0026|consen 129 HYDEKGEEGLFSGLSN-PFIV-GRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITT 201 (223)
T ss_pred ccCCccccccccCCCC-CeEE-Eee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhh
Confidence 1100 0 134555542 3334 343 67766555443 25689999999996 9999999998899999999998776
Q ss_pred CCchHHHHHHHHHHHHhhHH
Q 008567 533 GRPSALFLGLILAATKQLEA 552 (561)
Q Consensus 533 ~~~~~LF~~Fi~aa~~~~~~ 552 (561)
. ++-+.++|++...+.-++
T Consensus 202 e-Gk~~irNflni~~~tWeE 220 (223)
T KOG0026|consen 202 E-GKTIVRNFIKIVEKKWSE 220 (223)
T ss_pred h-hHHHHHHHHHhcccchhc
Confidence 4 688999999987665443
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.71 E-value=4.3e-16 Score=156.28 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=92.8
Q ss_pred hccCCCeEEEcCCCCCCc-------h---hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCC
Q 008567 359 TLRNAECVLVPGGFGDRG-------V---GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETP 428 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~~-------~---~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~ 428 (561)
.+.++|||||+||+.... + ....+.++.+.++++|+||||+|+|+|+.++|++|..-
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~------------- 108 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHS------------- 108 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccC-------------
Confidence 457899999999976521 1 34578889998999999999999999999999998320
Q ss_pred CceeEecCCCCcccCCcccccCceeEEEcCC---CcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCC
Q 008567 429 NPVVIFMPEGSRTHMGSTMRLGSRRTLFQTP---DCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETG 505 (561)
Q Consensus 429 ~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~---~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg 505 (561)
.... +|.+++.+.+. ++++..+. ....+ .|+|++.+ .+ +.|++++|.++.+
T Consensus 109 ----------~~~e------~G~~~v~lt~~g~~d~l~~~~~-~~~~v--~~~H~d~~------~l-P~~a~~LA~s~~~ 162 (235)
T PRK08250 109 ----------PEKE------IGYFPITLTEAGLKDPLLSHFG-STLTV--GHWHNDMP------GL-TDQAKVLATSEGC 162 (235)
T ss_pred ----------CCCc------eeEEEEEEccccccCchhhcCC-CCcEE--EEEeccee------cC-CCCCEEEECCCCC
Confidence 0011 33456666543 23444442 23333 56676532 34 7899999998877
Q ss_pred CeEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 506 KRMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 506 ~~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
. ++++.+.++ ++|+|||||++..
T Consensus 163 ~-~qa~~~~~~--~~g~QfHPE~~~~ 185 (235)
T PRK08250 163 P-RQIVQYSNL--VYGFQCHMEFTVE 185 (235)
T ss_pred C-ceEEEeCCC--EEEEeecCcCCHH
Confidence 6 999998654 8999999999754
No 80
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.70 E-value=8e-15 Score=160.18 Aligned_cols=306 Identities=18% Similarity=0.198 Sum_probs=161.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||-|||+ |+-||+||.++++.|++.|+++|++|.++|.+|- .+|| -.+++.
T Consensus 3 m~~i~I~-gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd-~~d~------------------------~~~~~~--- 53 (451)
T PRK01077 3 MPALVIA-APASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD-YIDP------------------------AYHTAA--- 53 (451)
T ss_pred CcEEEEE-eCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC-cccH------------------------HHHHHH---
Confidence 5779999 9999999999999999999999999999999541 0111 111111
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcccc-----cc
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGD-----IE 155 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgd-----ie 155 (561)
+|+...+ .- ...+ -.+.|++++.+++ .++|++|||+.|-.-| .+
T Consensus 54 ---------~g~~~~~---------ld--~~~~---~~~~v~~~~~~~~--------~~~D~vlVEGagGl~~g~~~~~~ 102 (451)
T PRK01077 54 ---------TGRPSRN---------LD--SWMM---GEELVRALFARAA--------QGADIAVIEGVMGLFDGAGSDPD 102 (451)
T ss_pred ---------hCCCccc---------CC--ceeC---CHHHHHHHHHHhc--------ccCCEEEEECCCccccCCccCCC
Confidence 1111110 00 0011 1478899998886 5789999999876644 11
Q ss_pred ccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCC-ccccCCccchHHHHHhCCCcccEEEEeecCC-C-Cchhhhcccc
Q 008567 156 SMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVG-EQKTKPTQHSVRELRALGLTPHLLACRSAQP-L-LENTKEKLSQ 232 (561)
Q Consensus 156 ~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~-e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~-l-~~~~~~kisl 232 (561)
..-.++-++.+... ++.| ..... ..-.-.+.++.+.+ ..++...++|+-.-.+ . ....++.+..
T Consensus 103 ~~s~adiA~~l~~p-----viLV-------~~~~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~ 169 (451)
T PRK01077 103 EGSTADIAKLLGAP-----VVLV-------VDASGMAQSAAALVLGFATF-DPDVRIAGVILNRVGSERHYQLLREALER 169 (451)
T ss_pred CCCHHHHHHHhCCC-----EEEE-------ECCchHHHHHHHHHHHHHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHh
Confidence 22234555555432 3332 21100 00001122222333 2367777888643321 1 1111222222
Q ss_pred cCCCCCCCeeeeCC---CCCcchhcHHHHhc-chhhhhhhhcCCCccCCCCChhHHHHHHhhhc-------------CCC
Q 008567 233 FCHVPIGNILNIHD---VPNIWHVPLLLRNQ-NAHHSILKQLNLLSIAAPPNLQAWTKRAETYD-------------NLK 295 (561)
Q Consensus 233 ~~~v~~~~Vi~~~d---vdt~y~vp~~l~~q-G~~~~i~~~l~l~~~~~~~~~~~w~~l~~~~~-------------~~~ 295 (561)
++++.-++++... ++.| .+.+.--.+ .-.+..++.+.-. .....+ |..+.+-.. ...
T Consensus 170 -~gipvLG~IP~~~~l~~p~r-~lgl~~~~e~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (451)
T PRK01077 170 -CGIPVLGALPRDAALALPER-HLGLVQASEHGDLEARLDALADL-VEEHVD---LDALLALARAAPPPPPAAAPPPPAP 243 (451)
T ss_pred -cCCCEEEEeeCCcccCCCcc-ccCCCCccccccHHHHHHHHHHH-HHHcCC---HHHHHHHHhCCCcccccccccccCC
Confidence 4455444444322 1222 111111000 0000011000000 000001 221111000 012
Q ss_pred CceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 296 NSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 296 ~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
..++|||+ +.-.+.=.|..-+++|+..|+++ .|+.+-+ + +.+.++|+|+||||+...
T Consensus 244 ~~~~iava-~d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~ 300 (451)
T PRK01077 244 PGVRIAVA-RDAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPEL 300 (451)
T ss_pred CCceEEEE-ecCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhh
Confidence 23799999 55455445677889999888654 4565421 0 345689999999997531
Q ss_pred ------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008567 376 ------GVGGMILAAKYARENNIPYLGICLGMQISVIEF 408 (561)
Q Consensus 376 ------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~ 408 (561)
...+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 301 ~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 301 FAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124678899999999999999999999996553
No 81
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.65 E-value=1.6e-15 Score=146.43 Aligned_cols=171 Identities=16% Similarity=0.270 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-----chhHHHHHHH
Q 008567 311 DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-----GVGGMILAAK 385 (561)
Q Consensus 311 DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-----~~~g~i~~ir 385 (561)
.++....++|+..|+++.. +.+. +.+.++||||+|||+... ......+.++
T Consensus 8 g~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~ 63 (183)
T cd01749 8 GDFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLR 63 (183)
T ss_pred CCcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHH
Confidence 3346777999999987644 3331 457889999999987432 1234567788
Q ss_pred HHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCccccc
Q 008567 386 YARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSK 465 (561)
Q Consensus 386 ~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~ 465 (561)
.+.+.++|+||||+|||+|+.++++. + ....+. -.+..+. ....|+. .|.....+... .
T Consensus 64 ~~~~~g~PvlGiC~G~qlL~~~~~~~--~----~~~glG-~~~~~v~-------~~~~g~~--~g~~~~~l~~~-----~ 122 (183)
T cd01749 64 EFIRAGKPVFGTCAGLILLAKEVEDQ--G----GQPLLG-LLDITVR-------RNAFGRQ--VDSFEADLDIP-----G 122 (183)
T ss_pred HHHHcCCeEEEECHHHHHHHHHhccc--C----CCCccC-ceeEEEE-------eeccccc--cceEEEcCCCC-----c
Confidence 88899999999999999999988753 0 000000 0000010 0011211 12222222111 1
Q ss_pred ccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCCCCCCCchHHHHHHH
Q 008567 466 LYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQFHPEFKSRPGRPSALFLGLI 543 (561)
Q Consensus 466 iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQFHPE~~~~p~~~~~LF~~Fi 543 (561)
+ + .......+.|. +.+..+ +.+++++|.++ +. +++++.. + ++|+|||||++... .+|+.|+
T Consensus 123 ~-~-~~~~~~~~~h~-----~~v~~~-p~~~~~la~~~-~~-~~a~~~~--~-~~g~qfHPE~~~~~----~~~~~f~ 183 (183)
T cd01749 123 L-G-LGPFPAVFIRA-----PVIEEV-GPGVEVLAEYD-GK-IVAVRQG--N-VLATSFHPELTDDT----RIHEYFL 183 (183)
T ss_pred C-C-CCccEEEEEEC-----cEEEEc-CCCcEEEEecC-CE-EEEEEEC--C-EEEEEcCCccCCCc----chhhhhC
Confidence 1 0 11222344554 344445 77999999875 44 5677753 3 89999999998543 5666663
No 82
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=155.16 Aligned_cols=195 Identities=22% Similarity=0.290 Sum_probs=124.9
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcC-C-CCCC-
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPG-G-FGDR- 375 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpG-G-~G~~- 375 (561)
.|-++ +|+.-. -.|+.+||+|.|+++.. +.+ | .++.++|-+|+|| | ||..
T Consensus 3 vv~~l-d~~agn--~~si~nal~hlg~~i~~------v~~-----------P-------~DI~~a~rLIfPGVGnfg~~~ 55 (541)
T KOG0623|consen 3 VVTLL-DYGAGN--VRSIRNALRHLGFSIKD------VQT-----------P-------GDILNADRLIFPGVGNFGPAM 55 (541)
T ss_pred eEEEE-ecCCcc--HHHHHHHHHhcCceeee------ccC-----------c-------hhhccCceEeecCcccchHHH
Confidence 35566 674211 38999999999998744 222 2 5678999999999 3 4432
Q ss_pred ---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCC-CCcccCCcccccCc
Q 008567 376 ---GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPE-GSRTHMGSTMRLGS 451 (561)
Q Consensus 376 ---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~-~~~~~~G~~mrlG~ 451 (561)
...+..+.++..+++++|++|||+|.|+| |.+.+. ...|.-. ...+.-|-+|-.. ..++|+|||
T Consensus 56 D~L~~~Gf~eplr~YiesgkPfmgicvGlQaL---F~gSvE---~p~skGL-gvipg~v~RFD~s~k~VPhIGWN----- 123 (541)
T KOG0623|consen 56 DVLNRTGFAEPLRKYIESGKPFMGICVGLQAL---FDGSVE---NPPSKGL-GVIPGIVGRFDASAKIVPHIGWN----- 123 (541)
T ss_pred HHHhhhhhHHHHHHHHhcCCCeEeehhhHHHH---hccccc---CCCcCcc-cccccceecccCCCCcCCccccc-----
Confidence 24688899999999999999999999999 333331 1111111 1123334444322 348999998
Q ss_pred eeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCC--eEEEEEeCCCCcEEEEcccCCCC
Q 008567 452 RRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGK--RMEILELPSHPFYVGVQFHPEFK 529 (561)
Q Consensus 452 ~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~--~vE~ie~~~~p~~~GvQFHPE~~ 529 (561)
.|.+..+ +.+...-+ .-..++.|+| .|++.-..+++.+|++. ....|+ ++.+| .+.+++++|||||++
T Consensus 124 -sc~v~sd-~effg~~p---~~~~YFVHSy-l~~ek~~~len~~wkia-t~kYG~E~Fi~ai---~knN~~AtQFHPEKS 193 (541)
T KOG0623|consen 124 -SCQVGSD-SEFFGDVP---NRHVYFVHSY-LNREKPKSLENKDWKIA-TCKYGSESFISAI---RKNNVHATQFHPEKS 193 (541)
T ss_pred -ccccCCc-ccccccCC---CceEEEEeee-cccccccCCCCCCceEe-eeccCcHHHHHHH---hcCceeeEecccccc
Confidence 3444444 44444332 2234788998 55554456677888764 334443 33333 345699999999999
Q ss_pred CCCCCchHHHHHHHH
Q 008567 530 SRPGRPSALFLGLIL 544 (561)
Q Consensus 530 ~~p~~~~~LF~~Fi~ 544 (561)
... +...+++|+.
T Consensus 194 G~a--GL~vl~~FL~ 206 (541)
T KOG0623|consen 194 GEA--GLSVLRRFLH 206 (541)
T ss_pred cch--hHHHHHHHHh
Confidence 876 4677888887
No 83
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.63 E-value=2.6e-14 Score=156.04 Aligned_cols=293 Identities=20% Similarity=0.249 Sum_probs=165.0
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLT 83 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~ 83 (561)
|||| |+-||+||.+++++|++.|+++|++|.++|. | | |+ .|-..+.+-.
T Consensus 2 ~~I~-gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~--------g---~----------d~----~D~~~~~~~~----- 50 (449)
T TIGR00379 2 VVIA-GTSSGVGKTTISTGIMKALSRRKLRVQPFKV--------G---P----------DY----IDPMFHTQAT----- 50 (449)
T ss_pred EEEE-eCCCCCcHHHHHHHHHHHHHHCCCceeEEcc--------C---C----------CC----CCHHHHHHHh-----
Confidence 7899 9999999999999999999999999999995 3 2 22 1222222211
Q ss_pred CCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcccc----c-cccH
Q 008567 84 KNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGD----I-ESMP 158 (561)
Q Consensus 84 ~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgd----i-e~~~ 158 (561)
|+...++ -.|+ + -.+.|++.+.+++ .++|++|||+.|-.-| + +.--
T Consensus 51 -------g~~~~~l------d~~~------~--~~~~i~~~~~~~~--------~~~D~viVEGagGl~~g~~p~~~~~s 101 (449)
T TIGR00379 51 -------GRPSRNL------DSFF------M--SEAQIQECFHRHS--------KGTDYSIIEGVRGLYDGISAITDYGS 101 (449)
T ss_pred -------CCchhhC------Cccc------C--CHHHHHHHHHHhc--------ccCCEEEEecCCccccCCCCCCCCcc
Confidence 2111110 0011 1 2678999999886 5789999999865532 1 2223
Q ss_pred HHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHH------HhCCCcccEEEEeecCC--CCchhhhcc
Q 008567 159 FIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVREL------RALGLTPHLLACRSAQP--LLENTKEKL 230 (561)
Q Consensus 159 f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l------~s~Gi~pd~iI~R~~~~--l~~~~~~ki 230 (561)
.++-++++... + +++... ++ ..+++..+ ...|+...++|+-.-.+ .....++.+
T Consensus 102 ~adlAk~l~~p-----V-------ILV~~~----~~--~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i 163 (449)
T TIGR00379 102 TASVAKALDAP-----I-------VLVMNC----QR--LSRSAAAIVLGYRSFDPGVKLKGVILNRVGSERHLEKLKIAV 163 (449)
T ss_pred HHHHHHHhCCC-----E-------EEEECC----ch--HHHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 45656655332 1 222221 11 23455543 24588888888743322 112234455
Q ss_pred cccCCCCCCCeeeeCC---CCCcchhcHHH--Hhcchh---hh----hhhhcCCCccCCCCChhHHHHHHhh--------
Q 008567 231 SQFCHVPIGNILNIHD---VPNIWHVPLLL--RNQNAH---HS----ILKQLNLLSIAAPPNLQAWTKRAET-------- 290 (561)
Q Consensus 231 sl~~~v~~~~Vi~~~d---vdt~y~vp~~l--~~qG~~---~~----i~~~l~l~~~~~~~~~~~w~~l~~~-------- 290 (561)
..++.++.-++++... ++.| ++.+.- +..... +. +.+.++++ ...++...
T Consensus 164 ~~~~gipvLG~IP~~~~l~~p~r-hLgLv~~~e~~~~~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~ 233 (449)
T TIGR00379 164 EPLRGIPILGVIPRQQDLKVPDR-HLGLVPAGEREIIQQIFDWLAEVVEKYLDLD---------KLLEIAETARNLPSPM 233 (449)
T ss_pred HHhCCCCEEEEecCccccCCCCc-ccCCCChhhhhhHHHHHHHHHHHHHhhCCHH---------HHHHHhhcCCCccccc
Confidence 6666676555554432 1222 111100 000000 11 11112221 10011100
Q ss_pred --h--cCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeE
Q 008567 291 --Y--DNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECV 366 (561)
Q Consensus 291 --~--~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGI 366 (561)
. .....+++|||+ +...+.=-|..-+++|+..|+++ .|+.+-. | +.+.++|+|
T Consensus 234 ~~~~~~~~~~~~~Iava-~d~afnFy~~~~~~~L~~~g~~~------~~~~~~~--------d--------~~l~~~d~l 290 (449)
T TIGR00379 234 SLLWEPQNSKYVRIAVA-QDQAFNFYYQDNLDALTHNAAEL------VPFSPLE--------D--------TELPDVDAV 290 (449)
T ss_pred cccccccCCCCcEEEEE-echhhceeHHHHHHHHHHCCCEE------EEECCcc--------C--------CCCCCCCEE
Confidence 0 011223799999 44334323456778898887653 4565421 0 335689999
Q ss_pred EEcCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 367 LVPGGFGDR---G---VGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 367 ilpGG~G~~---~---~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
+||||+... . ..++.+.++.+.+++.|+||||-|||+|+-.
T Consensus 291 ~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 291 YIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred EeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999998542 1 2457788999999999999999999999655
No 84
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.57 E-value=1e-13 Score=135.71 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=124.4
Q ss_pred ceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc-CCCeEEEcCCCCCC
Q 008567 297 SVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR-NAECVLVPGGFGDR 375 (561)
Q Consensus 297 ~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~-~~DGIilpGG~G~~ 375 (561)
.+||||+ .+-+.. ....+..|++.+|.++.. .|.... .+. ++|+|++||||..-
T Consensus 2 ~~kvaVi-~fpGtN-~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGTN-CDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCcC-chHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 884332 236788899999998744 455431 234 79999999998542
Q ss_pred -----c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcc
Q 008567 376 -----G----VGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGST 446 (561)
Q Consensus 376 -----~----~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~ 446 (561)
+ .+..++.++.+.+.++|+||||.|+|+|. +.| - ++.+ |+++. .
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g-L---lPGa---------------l~~N~-------s 109 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG-L---LPGA---------------LTRNE-------S 109 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC-c---CCcc---------------eecCC-------C
Confidence 2 35667778888889999999999999996 533 1 1111 11110 0
Q ss_pred cccCce--eEEEcCCCcccccccCCcee--EE-eeeeeeeeeCcccccccccCCeEEEEE-----------eCCCC--eE
Q 008567 447 MRLGSR--RTLFQTPDCVTSKLYRNAEY--VD-ERHRHRYEVNPEAIGVLEEAGLKFVGK-----------DETGK--RM 508 (561)
Q Consensus 447 mrlG~~--~v~l~~~~s~l~~iyg~~~~--I~-~~h~HrY~vn~~~v~~le~~gl~v~a~-----------~~dg~--~v 508 (561)
.|+=.+ .+++..++|.+.+-|.+... |. ..+.-||.++.+.+++|+.+|..+.-+ +++|. -|
T Consensus 110 ~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 110 LRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred CceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 111112 23344455777666643222 22 344457888877777787777655433 45665 36
Q ss_pred EEEEeCCCCcEEEEcccCCCCCCCCC----chHHHHHHHHH
Q 008567 509 EILELPSHPFYVGVQFHPEFKSRPGR----PSALFLGLILA 545 (561)
Q Consensus 509 E~ie~~~~p~~~GvQFHPE~~~~p~~----~~~LF~~Fi~a 545 (561)
.+|...+.. ++|...|||+..+... ...||.+.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 666666665 9999999999886543 46677766543
No 85
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.54 E-value=1.3e-14 Score=152.16 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=96.0
Q ss_pred cCCCeEEEcCCCCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCC
Q 008567 361 RNAECVLVPGGFGDRGV---GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPE 437 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~---~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~ 437 (561)
.++-||||+|||-+--. ...-.+ ..+-++|+||||.|||+|+-.+|+.|..= ...|
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~---if~~~vpvLGICYGmQ~i~~~~Gg~V~~~---~~RE--------------- 116 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPA---IFELGVPVLGICYGMQLINKLNGGTVVKG---MVRE--------------- 116 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChh---HhccCCcceeehhHHHHHHHHhCCccccc---cccC---------------
Confidence 47999999999866311 111111 23568999999999999999999988430 0111
Q ss_pred CCcccCCcccccCceeEEEcCCCcccccccCCcee--EEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCC
Q 008567 438 GSRTHMGSTMRLGSRRTLFQTPDCVTSKLYRNAEY--VDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPS 515 (561)
Q Consensus 438 ~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg~~~~--I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~ 515 (561)
.|...+...+...+|.++.+ ... ++..|. +.+..+ +.|+++.|++.+.. +.++....
T Consensus 117 -----------~G~~eI~v~~~~~lF~~~~~-~~~~~VlltHg-------dsl~~v-~~g~kv~a~s~n~~-va~i~~e~ 175 (552)
T KOG1622|consen 117 -----------DGEDEIEVDDSVDLFSGLHK-TEFMTVLLTHG-------DSLSKV-PEGFKVVAFSGNKP-VAGILNEL 175 (552)
T ss_pred -----------CCCceEEcCchhhhhhhhcc-cceeeeeeccc-------cchhhc-cccceeEEeecCcc-eeeehhhh
Confidence 12234444333234555542 222 555554 666666 78899999987775 88888888
Q ss_pred CCcEEEEcccCCCCCCCCCchHHHHHHH
Q 008567 516 HPFYVGVQFHPEFKSRPGRPSALFLGLI 543 (561)
Q Consensus 516 ~p~~~GvQFHPE~~~~p~~~~~LF~~Fi 543 (561)
++ ++|+|||||...++. +..++.+|+
T Consensus 176 kk-iyglqfhpEV~~t~~-g~~ll~nFl 201 (552)
T KOG1622|consen 176 KK-IYGLQFHPEVTLTPN-GKELLKNFL 201 (552)
T ss_pred hh-hhcCCCCCcccccCc-hhHHHHHHH
Confidence 88 899999999999985 479999998
No 86
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.53 E-value=2.9e-13 Score=137.71 Aligned_cols=211 Identities=21% Similarity=0.299 Sum_probs=125.1
Q ss_pred ceEEEEEeccCCC-cccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC-
Q 008567 297 SVRIAMVGKYVGL-ADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD- 374 (561)
Q Consensus 297 ~~~Iavvgky~~~-~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~- 374 (561)
++||||+ .+.+. .| .++.++|+++|+.+.+ .|+.. +.+ . ...++++|+|+||||++.
T Consensus 3 ~~kvaVl-~~pG~n~d--~e~~~Al~~aG~~v~~----v~~~~--~~~-----~-------~~~l~~~DgLvipGGfs~g 61 (261)
T PRK01175 3 SIRVAVL-RMEGTNCE--DETVKAFRRLGVEPEY----VHIND--LAA-----E-------RKSVSDYDCLVIPGGFSAG 61 (261)
T ss_pred CCEEEEE-eCCCCCCH--HHHHHHHHHCCCcEEE----Eeecc--ccc-----c-------ccchhhCCEEEECCCCCcc
Confidence 4789999 67444 34 5788999999988644 23321 110 0 034788999999999743
Q ss_pred -C---c------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccC
Q 008567 375 -R---G------V-GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHM 443 (561)
Q Consensus 375 -~---~------~-~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~ 443 (561)
. + . ..+.++++.+.++++|+||||+|+|+|+- .| -+ +.. +... . .+-+.|+.+..
T Consensus 62 D~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~G-lL---pg~--~~~~-~--~~~~~L~~N~s---- 127 (261)
T PRK01175 62 DYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-LG-LL---PGF--DEIA-E--KPEMALTVNES---- 127 (261)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-CC-CC---CCC--Cccc-c--CCcceEeecCC----
Confidence 1 1 1 11337788889999999999999999954 33 22 110 0100 0 01112322111
Q ss_pred CcccccCce--eEEEcCCCcccccccCCc-eeEEeeeee-eee-eCcccccccccCCeEEEEE------------eCCCC
Q 008567 444 GSTMRLGSR--RTLFQTPDCVTSKLYRNA-EYVDERHRH-RYE-VNPEAIGVLEEAGLKFVGK------------DETGK 506 (561)
Q Consensus 444 G~~mrlG~~--~v~l~~~~s~l~~iyg~~-~~I~~~h~H-rY~-vn~~~v~~le~~gl~v~a~------------~~dg~ 506 (561)
.|+=.+ .+++....|.+-+-+.+. -.+...|.- +|. .+++.++.|+..+..+.-+ |++|+
T Consensus 128 ---~~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs 204 (261)
T PRK01175 128 ---NRFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGS 204 (261)
T ss_pred ---CCeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCC
Confidence 011111 222333234444333211 122334443 566 5666677777777666544 56665
Q ss_pred --eEEEEEeCCCCcEEEEcccCCCCCCCC------------CchHHHHHHHHHH
Q 008567 507 --RMEILELPSHPFYVGVQFHPEFKSRPG------------RPSALFLGLILAA 546 (561)
Q Consensus 507 --~vE~ie~~~~p~~~GvQFHPE~~~~p~------------~~~~LF~~Fi~aa 546 (561)
-|++|..++.. ++|...|||+...|. ++..||+++++..
T Consensus 205 ~~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 205 IYNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 47788877776 999999999998876 6789999987643
No 87
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.47 E-value=7.1e-13 Score=133.27 Aligned_cols=176 Identities=21% Similarity=0.239 Sum_probs=106.4
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---------hhH-HHHH
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG---------VGG-MILA 383 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~---------~~g-~i~~ 383 (561)
.++.++|+.+|+.+.+ .|+.. ..+. ...+.++|+|+||||+.... ... ..+.
T Consensus 13 ~~~~~al~~aG~~v~~----v~~~~-~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~ 74 (238)
T cd01740 13 RDMAYAFELAGFEAED----VWHND-LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEE 74 (238)
T ss_pred HHHHHHHHHcCCCEEE----EeccC-Cccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHHHH
Confidence 6899999999987754 23321 1100 02467899999999975311 112 6788
Q ss_pred HHHHHHcCCCEEEEehhHHHHHHH--hcccccccccCCcCCCCCCCCCceeEecCCCCcccCCcccccCceeEEEcCCCc
Q 008567 384 AKYARENNIPYLGICLGMQISVIE--FARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDC 461 (561)
Q Consensus 384 ir~a~e~~iPvLGICLGmQLL~ie--~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s 461 (561)
++.+.++++|+||||.|+|+|+.+ +++.+.. ..+.++.. ...+ +. ..+.+..+++
T Consensus 75 l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~---------------~~~~---~~--v~~~v~~~~s 131 (238)
T cd01740 75 VKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFIC---------------RWQN---RF--VTLRVENNDS 131 (238)
T ss_pred HHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceec---------------cccC---ce--EEEEEcCCCC
Confidence 899999999999999999999654 3332210 01111100 0000 00 1122222223
Q ss_pred ccccc--cCCceeEEeeeee-eeeeCcccccccccCCeEEEEE-------------eCCCC--eEEEEEeCCCCcEEEEc
Q 008567 462 VTSKL--YRNAEYVDERHRH-RYEVNPEAIGVLEEAGLKFVGK-------------DETGK--RMEILELPSHPFYVGVQ 523 (561)
Q Consensus 462 ~l~~i--yg~~~~I~~~h~H-rY~vn~~~v~~le~~gl~v~a~-------------~~dg~--~vE~ie~~~~p~~~GvQ 523 (561)
.+.+- .+....++..|.+ ||.++++.+..++..+..+ -+ |++|. -|++|..++.. ++|..
T Consensus 132 i~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglM 209 (238)
T cd01740 132 PFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMM 209 (238)
T ss_pred ceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEc
Confidence 33332 2323456667765 6877777676665555443 22 46666 38888888877 99999
Q ss_pred ccCCCCCCC
Q 008567 524 FHPEFKSRP 532 (561)
Q Consensus 524 FHPE~~~~p 532 (561)
.|||+...+
T Consensus 210 phPer~~~~ 218 (238)
T cd01740 210 PHPERAVEP 218 (238)
T ss_pred CChHHcccc
Confidence 999999887
No 88
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.44 E-value=1.2e-12 Score=125.50 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=60.5
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC--
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-- 375 (561)
+||+|+.-++ ++....++|++.|+++.+ +.. | +.++++|+|++|||++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~------v~~-----------~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKL------VKF-----------N-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEE------ECC-----------H-------HHHhCCCEEEECCChHHHHH
Confidence 6899995444 446788999999987533 221 1 568899999999997654
Q ss_pred c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 376 G---VGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 376 ~---~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
. ..++.+.+++..+ ++|+||||+|||+|+-.
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~ 88 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKG 88 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHcc
Confidence 1 2457888888775 67999999999999653
No 89
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.43 E-value=7.5e-12 Score=135.58 Aligned_cols=293 Identities=18% Similarity=0.263 Sum_probs=157.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc-cccCCCCCCCCccccceEEcCCCcccccCCcccccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLD 79 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp-yln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~ 79 (561)
|+=|||+ |+-||.||-.++..|.+.|+++|++|.++|.-| |+ ||+ +++|...
T Consensus 1 m~~~~i~-~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~~------------------------~~~~~~g 53 (433)
T PRK13896 1 MKGFVLG-GTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DPS------------------------HHEAVAG 53 (433)
T ss_pred CceEEEE-eCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CHH------------------------HHHHHhC
Confidence 5668999 999999999999999999999999999999966 53 432 2222222
Q ss_pred CCCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccH--HHHHHHHHHhhccCCCCCCCCCCEEEEecCCcccccccc
Q 008567 80 VRLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHIT--DAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESM 157 (561)
Q Consensus 80 ~~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~--~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~ 157 (561)
... .| +-||.. +.|++.+.+ ...|++|||+.|-.-|=...
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 111 01 112222 334443321 23799999999888764434
Q ss_pred HHHHHHHhhccccCCCCEEEEEEeeeeEeCC-CCccccCCccchHHHHHh---CCCcccEEEEeecCCC--Cchhhhc--
Q 008567 158 PFIEALRQLSFSVGPDNFCLIHVSLIPVLGV-VGEQKTKPTQHSVRELRA---LGLTPHLLACRSAQPL--LENTKEK-- 229 (561)
Q Consensus 158 ~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~-~~e~ktkptq~sv~~l~s---~Gi~pd~iI~R~~~~l--~~~~~~k-- 229 (561)
-.++-++++... ++.| ..+ .+-.---+|=.+++++.. .++...+||+-.-.+. ....++.
T Consensus 96 s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 566666666442 2221 211 110010111122233333 4899999997543321 1111222
Q ss_pred --ccccCCCCCCCeeeeCCCCCcchhcHHHHhc--c---hhhhhhhhcCCCccCCCCChhHHHHHHhh--h------cCC
Q 008567 230 --LSQFCHVPIGNILNIHDVPNIWHVPLLLRNQ--N---AHHSILKQLNLLSIAAPPNLQAWTKRAET--Y------DNL 294 (561)
Q Consensus 230 --isl~~~v~~~~Vi~~~dvdt~y~vp~~l~~q--G---~~~~i~~~l~l~~~~~~~~~~~w~~l~~~--~------~~~ 294 (561)
+..+..+|...-+.+ ++| +|-+.--.+ . ..+.+-+.++++ ...++... . ...
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~~~~~ 230 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE---------RLAAVAREPPRPEPPEEAPA 230 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH---------HHHHHhhCCCCccccccccC
Confidence 223333333222222 233 222211111 0 111111112221 11111100 0 011
Q ss_pred CCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 295 KNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
...++|||--|- .+.=-|..-++.|+.+ +++. ++.+-. . +.+.++|+|+||||+..
T Consensus 231 ~~~~~iavA~D~-AF~FyY~enl~~L~~~-aelv------~fSPl~--~--------------~~lp~~D~l~lpGG~~e 286 (433)
T PRK13896 231 TGDPTVAVARDA-AFCFRYPATIERLRER-ADVV------TFSPVA--G--------------DPLPDCDGVYLPGGYPE 286 (433)
T ss_pred CCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcEE------EEcCCC--C--------------CCCCCCCEEEeCCCchh
Confidence 123689998443 2222367788999888 6542 233311 0 34568999999999855
Q ss_pred Cc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 375 RG---V--GGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 375 ~~---~--~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
-. + .+..+.++.+.+++.|++|||-|||+|+-.
T Consensus 287 ~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 287 LHADALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred hHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 31 1 234578888889999999999999999543
No 90
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.39 E-value=6.6e-12 Score=129.81 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=117.6
Q ss_pred CceEEEEEeccCCC-cccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc-CCCcchhhHHHhc--cCCCeEEEcCC
Q 008567 296 NSVRIAMVGKYVGL-ADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK-LTPKDHAAAWETL--RNAECVLVPGG 371 (561)
Q Consensus 296 ~~~~Iavvgky~~~-~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~-~d~~~~~~~~~~l--~~~DGIilpGG 371 (561)
++++|+|+ +.--. .++=..+.+.|...... +++.|+...+-...+.. ....+|...++.+ .++||+||+|.
T Consensus 34 rpl~i~il-NlMp~k~~TE~q~~rll~~~~~q----v~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILIL-NLMPKKIETETQFLRLLGNTPLQ----VDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEE-eCCCCCchHHHHHHHHhcCCCce----EEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 45899999 56222 13334566666444333 34455654432221110 0001122223444 48999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCC
Q 008567 372 FGD-------RGVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMG 444 (561)
Q Consensus 372 ~G~-------~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G 444 (561)
+-. +-+..+.+.+++++++.+|+||||.|+|+++.++||-. +. . + +
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~------~------------~--------~ 161 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KY------T------------L--------P 161 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cC------C------------C--------C
Confidence 743 12566888889999999999999999999999988731 10 0 0 0
Q ss_pred cccccCceeEEE-cCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 008567 445 STMRLGSRRTLF-QTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQ 523 (561)
Q Consensus 445 ~~mrlG~~~v~l-~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQ 523 (561)
. -.+|.++..+ .+.++++..+. ..+..-|.|--+|..+.+.. +.|++++|.++... +.++...+.. ++++|
T Consensus 162 ~-K~~Gv~~~~~~~~~~pL~~g~~---d~F~~phSr~~~V~~~~i~~--~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQ 233 (302)
T PRK05368 162 E-KLSGVFEHRVLDPHHPLLRGFD---DSFLVPHSRYTEVREEDIRA--ATGLEILAESEEAG-VYLFASKDKR-EVFVT 233 (302)
T ss_pred C-ceeEEEEEEEcCCCChhhcCCC---CccccceeehhhccHHHhcc--CCCCEEEecCCCCC-eEEEEeCCCC-EEEEE
Confidence 0 0123333333 22335555542 22333555555555444433 68999999987766 8899887666 89999
Q ss_pred ccCCCCCC
Q 008567 524 FHPEFKSR 531 (561)
Q Consensus 524 FHPE~~~~ 531 (561)
+|||+...
T Consensus 234 gHPEYd~~ 241 (302)
T PRK05368 234 GHPEYDAD 241 (302)
T ss_pred CCCCCCHH
Confidence 99999864
No 91
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.5e-11 Score=116.89 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=64.0
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcC-ceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHAC-IACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR- 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag-~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~- 375 (561)
+||||++ ++.+....+++|+.++ +++ .|+.. | ++|+++||+|||||.++.
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~------~~Vk~-----------~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEV------VEVKR-----------P-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCce------EEEcC-----------H-------HHhccCcEEEecCccHHHH
Confidence 4788884 4445577889999996 443 34442 2 778999999999998763
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 376 ----GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 376 ----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
...++.+.++...++++|+||.|.||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 23578899999999999999999999999765
No 92
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.6e-12 Score=124.51 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=90.6
Q ss_pred HhccCCCeEEEcCCC----CCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCcee
Q 008567 358 ETLRNAECVLVPGGF----GDRGV-GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVV 432 (561)
Q Consensus 358 ~~l~~~DGIilpGG~----G~~~~-~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi 432 (561)
++|.++||++|+|.. ++..| ..+...++.....++|++|||+|||+++.+.|++|-. +
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr--a--------------- 117 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR--A--------------- 117 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc--C---------------
Confidence 678899999999974 43333 4566777888888999999999999999999988722 0
Q ss_pred EecCCCCcccCCcccccCceeEEEcCCCcccccccC---CceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCCeEE
Q 008567 433 IFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSKLYR---NAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRME 509 (561)
Q Consensus 433 ~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~iyg---~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE 509 (561)
..|..|-+|+-.+ ++.. ..-.+.+| ..-.|...| + +-+-.+ +.|.+..|.+++.+ +|
T Consensus 118 ---------~KG~~~~lg~iti-vk~~-~~~~~yFG~~~~~l~IikcH--q-----Devle~-PE~a~llasSe~ce-ve 177 (245)
T KOG3179|consen 118 ---------PKGPDLGLGSITI-VKDA-EKPEKYFGEIPKSLNIIKCH--Q-----DEVLEL-PEGAELLASSEKCE-VE 177 (245)
T ss_pred ---------CCCCcccccceEE-EEec-ccchhhcccchhhhhHHhhc--c-----cceecC-Cchhhhhccccccc-eE
Confidence 0122222222221 1111 22222232 122233334 3 333344 78899999999998 99
Q ss_pred EEEeCCCCcEEEEcccCCCCCCC
Q 008567 510 ILELPSHPFYVGVQFHPEFKSRP 532 (561)
Q Consensus 510 ~ie~~~~p~~~GvQFHPE~~~~p 532 (561)
++...+| ++++|-|||++...
T Consensus 178 ~fs~~~~--~l~fQGHPEyn~ei 198 (245)
T KOG3179|consen 178 MFSIEDH--LLCFQGHPEYNKEI 198 (245)
T ss_pred EEEecce--EEEecCCchhhHHH
Confidence 9999988 79999999998753
No 93
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.29 E-value=5.5e-11 Score=114.03 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=54.1
Q ss_pred CCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-----chhHHHH
Q 008567 308 GLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-----GVGGMIL 382 (561)
Q Consensus 308 ~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-----~~~g~i~ 382 (561)
.++.++....+.|+.+|.+... +.. + ++|.++||||||||..+. ...++.+
T Consensus 3 ALQG~~~EH~~~l~~lg~~~~~------Vr~-----------~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~ 58 (188)
T PF01174_consen 3 ALQGAFREHIRMLERLGAEVVE------VRT-----------P-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFE 58 (188)
T ss_dssp SSSSSHHHHHHHHHHTTSEEEE------E-S-----------G-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHH
T ss_pred ccccChHHHHHHHHHcCCCeEE------eCC-----------H-------HHHccCCEEEECCCcHHHHHHHHHHcCCHH
Confidence 3556668889999999987622 222 2 678899999999997653 2357889
Q ss_pred HHHHHHHcC-CCEEEEehhHHHHH
Q 008567 383 AAKYARENN-IPYLGICLGMQISV 405 (561)
Q Consensus 383 ~ir~a~e~~-iPvLGICLGmQLL~ 405 (561)
.++.+..++ +|+||+|.||-||+
T Consensus 59 ~l~~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 59 PLREFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHHHHTT--EEEEETHHHHHHE
T ss_pred HHHHHHHcCCCceeehhHHHHHhh
Confidence 999998887 99999999999983
No 94
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.27 E-value=1.3e-11 Score=120.99 Aligned_cols=180 Identities=21% Similarity=0.340 Sum_probs=106.4
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch--hHHHHHHHHHHHc-
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV--GGMILAAKYAREN- 390 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~--~g~i~~ir~a~e~- 390 (561)
.|+++.++..|+++ +.+.|..++++ ..+.++..+|||+|||...++. +-........+++
T Consensus 80 ASYVK~aEsgGARV---iPli~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~n 142 (340)
T KOG1559|consen 80 ASYVKLAESGGARV---IPLIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERN 142 (340)
T ss_pred HHHHHHHHcCCceE---EEEecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhcc
Confidence 37899999999987 33556655542 3356788999999999766543 2222333444443
Q ss_pred ----CCCEEEEehhHHHHHHHhcccccccccCCcCCCCCC-CCCceeEecCCCCcccCCcccccCceeEEEcCCCccccc
Q 008567 391 ----NIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSE-TPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCVTSK 465 (561)
Q Consensus 391 ----~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~-~~~~vi~lm~~~~~~~~G~~mrlG~~~v~l~~~~s~l~~ 465 (561)
..|++||||||.+|.+-...|-.-+ +.|+.. ...+. .+. ...+.-++|. -++ +. .++.+
T Consensus 143 DaGehFPvyg~CLGFE~lsmiISqnrdil-----e~~d~vd~AssL-qF~---~nvn~~~t~F-----QrF-Pp-ELLkk 206 (340)
T KOG1559|consen 143 DAGEHFPVYGICLGFELLSMIISQNRDIL-----ERFDAVDVASSL-QFV---GNVNIHGTMF-----QRF-PP-ELLKK 206 (340)
T ss_pred CCccccchhhhhhhHHHHHHHHhcChhHH-----Hhhcccccccce-eee---cccceeehhH-----hhC-CH-HHHHH
Confidence 3999999999999987654322111 122211 00010 000 1112222321 011 12 34555
Q ss_pred ccCCceeEEeeeeeeeeeCccccc---ccccCCeEEEEEeCCCC---eEEEEEeCCCCcEEEEcccCCCCCC
Q 008567 466 LYRNAEYVDERHRHRYEVNPEAIG---VLEEAGLKFVGKDETGK---RMEILELPSHPFYVGVQFHPEFKSR 531 (561)
Q Consensus 466 iyg~~~~I~~~h~HrY~vn~~~v~---~le~~gl~v~a~~~dg~---~vE~ie~~~~p~~~GvQFHPE~~~~ 531 (561)
+- ....+ .++|+|.+.|+... .| ..-+.++-++.|++ +|..++.+.+| +.|+|||||+.+.
T Consensus 207 L~-~dcLv--mq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnaf 273 (340)
T KOG1559|consen 207 LS-TDCLV--MQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAF 273 (340)
T ss_pred hc-cchhe--eeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceecc-ceeeeecCccCcc
Confidence 53 12233 57899999886543 22 33456666666653 78888899999 9999999999875
No 95
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.20 E-value=3.3e-09 Score=113.10 Aligned_cols=403 Identities=21% Similarity=0.264 Sum_probs=205.8
Q ss_pred EeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc-cccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCCC
Q 008567 6 VTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTK 84 (561)
Q Consensus 6 v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp-yln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~~ 84 (561)
|..|+.||.||-.++..|.+.|+++|++|.++|.=| | |||+.-..
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY--IDP~~H~~-------------------------------- 49 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY--IDPGYHTA-------------------------------- 49 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc--cCchhhhH--------------------------------
Confidence 445999999999999999999999999999999977 5 35553222
Q ss_pred CCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEec--------CCccccccc
Q 008567 85 NNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIEL--------GGTVGDIES 156 (561)
Q Consensus 85 ~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~--------gGtvgdie~ 156 (561)
-||+.-.+ | ...+++ .+.|++.+.+.+ ++.|++|||+ +++. |.-|
T Consensus 50 ----atG~~srN----------L--D~~mm~--~~~v~~~f~~~~--------~~adi~vIEGVMGLfDG~~~~~-~~gS 102 (451)
T COG1797 50 ----ATGRPSRN----------L--DSWMMG--EEGVRALFARAA--------ADADIAVIEGVMGLFDGRGSAT-DTGS 102 (451)
T ss_pred ----hhCCccCC----------C--chhhcC--HHHHHHHHHHhc--------CCCCEEEEeeccccccCCCCCc-CCCC
Confidence 33333222 1 334544 577778777776 6889999996 2233 4444
Q ss_pred cHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhC--CCcccEEEE---eecCCCCchhhhccc
Q 008567 157 MPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRAL--GLTPHLLAC---RSAQPLLENTKEKLS 231 (561)
Q Consensus 157 ~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~--Gi~pd~iI~---R~~~~l~~~~~~kis 231 (561)
.- .-+|.+..- + |++++ ....++-.=--|+-+++. .+.-.++|+ .|++ ...-.|+-+.
T Consensus 103 TA--~lAk~l~~P-----V-------vLVid--~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgser-H~~llr~Ale 165 (451)
T COG1797 103 TA--DLAKLLGAP-----V-------VLVVD--ASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSER-HYELLRDALE 165 (451)
T ss_pred HH--HHHHHhCCC-----E-------EEEEe--CcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCHH-HHHHHHHHhh
Confidence 33 333333322 1 33344 222221111122223332 233345664 2222 1222333344
Q ss_pred ccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhh--------hhhhcCCCccCCCCChhHHHHHHhh---hc--------
Q 008567 232 QFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHS--------ILKQLNLLSIAAPPNLQAWTKRAET---YD-------- 292 (561)
Q Consensus 232 l~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~--------i~~~l~l~~~~~~~~~~~w~~l~~~---~~-------- 292 (561)
-.|.|+.-+++.=.+ .. +||. |-=|++.+ .++.+..- ..+..+++...++... ..
T Consensus 166 ~~~gv~vlG~lpr~~--~l-~lp~--RHLGLV~a~E~~~~~~~~~~~a~~-v~~~vDld~l~~ia~~~~~~~~~~~~~~~ 239 (451)
T COG1797 166 EYTGVPVLGYLPRDD--DL-ELPS--RHLGLVPASERLELEAKLEALAEV-VEKHVDLDALLEIASSAGPLEPDLSPEPE 239 (451)
T ss_pred hcCCCcEEEEecCCc--cc-CCcc--cccccccchhhhhHHHHHHHHHHH-HHhhCCHHHHHHHHhccCCCCCCcccccc
Confidence 446666555554333 22 3331 22222211 11110000 0000111111111111 00
Q ss_pred C-CCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhcc-CCCeEEEcC
Q 008567 293 N-LKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLR-NAECVLVPG 370 (561)
Q Consensus 293 ~-~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~-~~DGIilpG 370 (561)
. .....||||.-|- .+.=-|...++.|+.+|+++.. ..+- ++ +.+. ++|+|.|||
T Consensus 240 ~~~~~~~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~------FSPL--~D--------------~~lP~~~D~vYlgG 296 (451)
T COG1797 240 RGNPLGVRIAVARDA-AFNFYYPENLELLREAGAELVF------FSPL--AD--------------EELPPDVDAVYLGG 296 (451)
T ss_pred ccCCcCceEEEEecc-hhccccHHHHHHHHHCCCEEEE------eCCc--CC--------------CCCCCCCCEEEeCC
Confidence 0 1123699998442 2322367899999999998732 3331 11 3454 699999999
Q ss_pred CCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCC
Q 008567 371 GFGDR------GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMG 444 (561)
Q Consensus 371 G~G~~------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G 444 (561)
||-.- ..+.+.+.|+.+.+.++|++|=|-|+--|+-. +.+++.. .++..-++|- ...|+
T Consensus 297 GYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~-------le~~~G~------~~~M~Gvlp~--~~~m~ 361 (451)
T COG1797 297 GYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES-------LEDADGD------TYEMVGVLPG--STRMT 361 (451)
T ss_pred CChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh-------eeccCCc------eeeeeeeecc--chhhh
Confidence 98652 23568889999999999999999999877433 2222211 1222233331 12333
Q ss_pred cc-cccCceeEEEcCCCcccccccCCceeEEeeeeeeeeeCcccccccccCCeEEEEEeCCCC--eEEEEEeCCCCcEEE
Q 008567 445 ST-MRLGSRRTLFQTPDCVTSKLYRNAEYVDERHRHRYEVNPEAIGVLEEAGLKFVGKDETGK--RMEILELPSHPFYVG 521 (561)
Q Consensus 445 ~~-mrlG~~~v~l~~~~s~l~~iyg~~~~I~~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~--~vE~ie~~~~p~~~G 521 (561)
.. +.||-..+....+ +++... |.+..=.|.|.-+....++ ...-+-....+|. --+++.. .+++|
T Consensus 362 ~Rl~~lGY~~~~~~~d-~~~~~~-G~~irGHEFHyS~~~~~~~-------~~~a~~~~~g~g~~~~~~G~~~---gnv~a 429 (451)
T COG1797 362 KRLQALGYREAEAVDD-TLLLRA-GEKIRGHEFHYSRLITEED-------AEPAFRVRRGDGIDNGRDGYRS---GNVLA 429 (451)
T ss_pred hhhhccceeEEEecCC-cccccC-CceeeeeeeeeeecccCCc-------CceeeeeecccCccccccceee---CCeEE
Confidence 33 3467677776665 333222 1111123444322212211 0111111111111 0233332 24889
Q ss_pred EcccCCCCCCCCCchHHHHHHHHHH
Q 008567 522 VQFHPEFKSRPGRPSALFLGLILAA 546 (561)
Q Consensus 522 vQFHPE~~~~p~~~~~LF~~Fi~aa 546 (561)
.=.|=-+.+.| .++.+|+++|
T Consensus 430 sY~H~H~~s~~----~~~~~~v~~~ 450 (451)
T COG1797 430 SYLHLHFASNP----AFAARFVAAA 450 (451)
T ss_pred EEEeeecccCH----HHHHHHHHhh
Confidence 88888887776 5677888776
No 96
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.17 E-value=2.2e-10 Score=116.45 Aligned_cols=196 Identities=21% Similarity=0.292 Sum_probs=105.0
Q ss_pred ceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 297 SVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 297 ~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
++||+|+ .+ +...| ..+..||+.+|+++.. + |+. ++-+. ...|+++|+|+|||||+.-
T Consensus 1 kpkV~Vl-~~pGtNce--~e~~~A~~~aG~~~~~---v-~~~--dl~~~------------~~~l~~~~~lvipGGFS~g 59 (259)
T PF13507_consen 1 KPKVAVL-RFPGTNCE--RETAAAFENAGFEPEI---V-HIN--DLLSG------------ESDLDDFDGLVIPGGFSYG 59 (259)
T ss_dssp --EEEEE-E-TTEEEH--HHHHHHHHCTT-EEEE---E-ECC--HHHTT------------S--GCC-SEEEE-EE-GGG
T ss_pred CCEEEEE-ECCCCCCH--HHHHHHHHHcCCCceE---E-EEE--ecccc------------cCchhhCcEEEECCccCcc
Confidence 3689999 55 33433 7889999999998765 1 221 11000 0468999999999998542
Q ss_pred -----c--h-------hHHHHHHHHHHHc-CCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCc
Q 008567 376 -----G--V-------GGMILAAKYAREN-NIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSR 440 (561)
Q Consensus 376 -----~--~-------~g~i~~ir~a~e~-~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~ 440 (561)
+ + ....++++.+.++ +.|+||||.|||+| +++| ++. .-...+ ......++++..
T Consensus 60 D~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL-~~~G--llp--~~~~~~-----~~~~~~L~~N~s- 128 (259)
T PF13507_consen 60 DYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQIL-VELG--LLP--GGEIKD-----SEQSPALTPNAS- 128 (259)
T ss_dssp GTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHH-CCCC--CST--T-----------TT--EEE--TT-
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHH-HHhC--cCC--Cccccc-----cCCCcEEcCCCC-
Confidence 1 1 2346778888888 99999999999999 5544 221 100000 112223332211
Q ss_pred ccCCcccccCceeEE--EcCCC-ccc-ccccCCceeEEeeeee-eeee-CcccccccccCCeEEEEEe------------
Q 008567 441 THMGSTMRLGSRRTL--FQTPD-CVT-SKLYRNAEYVDERHRH-RYEV-NPEAIGVLEEAGLKFVGKD------------ 502 (561)
Q Consensus 441 ~~~G~~mrlG~~~v~--l~~~~-s~l-~~iyg~~~~I~~~h~H-rY~v-n~~~v~~le~~gl~v~a~~------------ 502 (561)
.|+=.+.+. +.+.+ +.+ ..+ +...+...|.+ ||.+ +++.++.|+..+..+.-+.
T Consensus 129 ------~~fe~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~ 200 (259)
T PF13507_consen 129 ------GRFESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPR 200 (259)
T ss_dssp ------SS-EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTT
T ss_pred ------CCeEEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCC
Confidence 011111222 21221 121 222 22334445555 5777 5667778878887766554
Q ss_pred -CCCC--eEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 503 -ETGK--RMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 503 -~dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
++|. -|++|...+.. ++|...|||....+.
T Consensus 201 NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 201 NPNGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp SSS--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 3332 48999988877 999999999987754
No 97
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.05 E-value=5.3e-09 Score=124.78 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=124.9
Q ss_pred CceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 296 NSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 296 ~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
.++||+|+ .+ +...| .....|++.+|+++.. .|+.. |....... ...+....|.++|+|++||||+.
T Consensus 976 ~kpkvaIl-~~pGtNce--~d~a~Af~~aG~~~~~----v~~~d--l~~~~i~~---s~~~~~~~l~~~~~l~~pGGFSy 1043 (1239)
T TIGR01857 976 EKPRVVIP-VFPGTNSE--YDSAKAFEKEGAEVNL----VIFRN--LNEEALVE---SVETMVDEIDKSQILMLPGGFSA 1043 (1239)
T ss_pred CCCeEEEE-ECCCCCCH--HHHHHHHHHcCCceEE----EEEec--Cccccccc---chhhhhcccccCcEEEEcCccCc
Confidence 45899999 66 33433 7788999999998543 23321 11111000 00111135789999999999854
Q ss_pred C----c---h-------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCC-CCceeEecCCCC
Q 008567 375 R----G---V-------GGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSET-PNPVVIFMPEGS 439 (561)
Q Consensus 375 ~----~---~-------~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~-~~~vi~lm~~~~ 439 (561)
- + + ....+.++.+.+.+.|+||||.|||+| +++| ++ +. .++.+.. ..| .|+.+..
T Consensus 1044 GD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L-~~lG--Ll--P~---~~~~~~~~~~p--~l~~N~s 1113 (1239)
T TIGR01857 1044 GDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQAL-VKSG--LL--PY---GNIEAANETSP--TLTYNDI 1113 (1239)
T ss_pred ccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHH-HHcC--CC--cC---ccccccccCCc--eeeecCC
Confidence 2 1 1 345667777777899999999999999 5554 11 10 0111100 011 2221110
Q ss_pred cccCCcccccCce--eEEEcCCCccccccc--CCceeEEeeeee-eeeeCcccccccccCCeEEEEE-------------
Q 008567 440 RTHMGSTMRLGSR--RTLFQTPDCVTSKLY--RNAEYVDERHRH-RYEVNPEAIGVLEEAGLKFVGK------------- 501 (561)
Q Consensus 440 ~~~~G~~mrlG~~--~v~l~~~~s~l~~iy--g~~~~I~~~h~H-rY~vn~~~v~~le~~gl~v~a~------------- 501 (561)
.|+=.+ .+++..+.|.+..-+ |..-.+...|.- ||.++++.++.|+.+|...+-+
T Consensus 1114 -------~rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~ 1186 (1239)
T TIGR01857 1114 -------NRHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKY 1186 (1239)
T ss_pred -------CCeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCC
Confidence 011111 223333334443333 222234445543 6777766677777777655544
Q ss_pred eCCCC--eEEEEEeCCCCcEEEEcccCCCCCCCC-------CchHHHHHHHH
Q 008567 502 DETGK--RMEILELPSHPFYVGVQFHPEFKSRPG-------RPSALFLGLIL 544 (561)
Q Consensus 502 ~~dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p~-------~~~~LF~~Fi~ 544 (561)
|+||. -|++|..++.. ++|.+-|||+...+. +...||.+.++
T Consensus 1187 NPNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1187 NPNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 56665 47788888776 999999999987654 23678877664
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.95 E-value=1.8e-08 Score=122.04 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=116.2
Q ss_pred CceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 296 NSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 296 ~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
.++||+|+ .+ +...| .....||+.+|+.+.. .|+. +|.+.. ..|.++++|++||||+.
T Consensus 1034 ~~pkv~il-~~pG~N~~--~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~l~~~GGFS~ 1092 (1290)
T PRK05297 1034 ARPKVAIL-REQGVNSH--VEMAAAFDRAGFDAID----VHMS--DLLAGR------------VTLEDFKGLVACGGFSY 1092 (1290)
T ss_pred CCCeEEEE-ECCCCCCH--HHHHHHHHHcCCCeEE----EEee--cCcCCC------------CChhhCcEEEECCccCC
Confidence 45899999 66 33333 7789999999998743 2222 222111 34789999999999854
Q ss_pred Cc-------h-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCC
Q 008567 375 RG-------V-------GGMILAAKYAR-ENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGS 439 (561)
Q Consensus 375 ~~-------~-------~g~i~~ir~a~-e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~ 439 (561)
-+ + ....+.++.+. +.+.++||||.|||+| +++|. + ++.+ +. .| .+..+..
T Consensus 1093 gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L-~~lg~-l--~p~~---~~-----~p--~l~~N~s 1158 (1290)
T PRK05297 1093 GDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMM-SNLKE-I--IPGA---EH-----WP--RFVRNRS 1158 (1290)
T ss_pred cccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHH-HHhCC-c--cCCC---CC-----CC--eEeecCC
Confidence 21 1 13455566644 5689999999999999 55552 2 1111 10 01 1211100
Q ss_pred cccCCcccccCce--eEEEcCCCcccc-cccCCceeEEeeeee-eeeeCcccccccccCCeEEEEE-------------e
Q 008567 440 RTHMGSTMRLGSR--RTLFQTPDCVTS-KLYRNAEYVDERHRH-RYEVNPEAIGVLEEAGLKFVGK-------------D 502 (561)
Q Consensus 440 ~~~~G~~mrlG~~--~v~l~~~~s~l~-~iyg~~~~I~~~h~H-rY~vn~~~v~~le~~gl~v~a~-------------~ 502 (561)
| |+=++ .+++..+.|.+. .+-|..-.++..|.| ||.++++.++.|+..|...+-+ |
T Consensus 1159 ----~---rfesr~~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1231 (1290)
T PRK05297 1159 ----E---QFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPAN 1231 (1290)
T ss_pred ----C---CeEEeeeEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCC
Confidence 0 00001 223333334443 332322345667777 5666666666676677655444 5
Q ss_pred CCCC--eEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 503 ETGK--RMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 503 ~dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
++|. -|++|..++.. ++|...|||+...+.
T Consensus 1232 PNGS~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1232 PNGSPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred CCCChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 6665 48888888877 899999999987654
No 99
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.89 E-value=5.5e-08 Score=117.04 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=115.5
Q ss_pred CCceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 295 KNSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 295 ~~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
..++||+|+ .+ +...| .....||+.+|+.+.. .|+. +|.+.. ..|.+++||++||||+
T Consensus 1035 ~~~pkVaVl-~~pGtN~~--~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFS 1093 (1307)
T PLN03206 1035 TSKPKVAII-REEGSNGD--REMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFS 1093 (1307)
T ss_pred CCCCeEEEE-ECCCCCCH--HHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCC
Confidence 356899999 66 33333 7889999999998733 2332 222111 3478999999999984
Q ss_pred --CC---c--h-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhcccccccccCCcCCC---CCCCCCceeEec
Q 008567 374 --DR---G--V-------GGMILAAKYAR-ENNIPYLGICLGMQISVIEFARSVLGLKRANSNEF---DSETPNPVVIFM 435 (561)
Q Consensus 374 --~~---~--~-------~g~i~~ir~a~-e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef---~~~~~~~vi~lm 435 (561)
|. + + ....+.++.+. +.+.++||||.|||+| .++| ++ +.+..... ......| .+.
T Consensus 1094 yGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL-~~lg--ll--Pg~~~~~~~~~~~~e~~p--~l~ 1166 (1307)
T PLN03206 1094 YADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLM-ALLG--WV--PGPQVGGGLGAGGDPSQP--RFV 1166 (1307)
T ss_pred CccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHH-HHcC--CC--CCCccccccccccccCCc--eee
Confidence 42 1 1 23455666666 4589999999999999 4543 21 22210000 0000011 121
Q ss_pred CCCCcccCCcccccCce--eEEEcCCCcccc-cccCCceeEEeeeeee-eeeC-cccccccccCCeEEEEE---------
Q 008567 436 PEGSRTHMGSTMRLGSR--RTLFQTPDCVTS-KLYRNAEYVDERHRHR-YEVN-PEAIGVLEEAGLKFVGK--------- 501 (561)
Q Consensus 436 ~~~~~~~~G~~mrlG~~--~v~l~~~~s~l~-~iyg~~~~I~~~h~Hr-Y~vn-~~~v~~le~~gl~v~a~--------- 501 (561)
.+. ..|+=++ .+++.++.|.+. .+-|..-.++..|.|+ |.+. ++.+..+..+|...+-+
T Consensus 1167 ~N~-------s~rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~ 1239 (1307)
T PLN03206 1167 HNE-------SGRFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTE 1239 (1307)
T ss_pred ecC-------CCCeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccC
Confidence 110 0011011 223333334443 3323224566778774 3433 44556666666555443
Q ss_pred ----eCCCC--eEEEEEeCCCCcEEEEcccCCCCCCCC
Q 008567 502 ----DETGK--RMEILELPSHPFYVGVQFHPEFKSRPG 533 (561)
Q Consensus 502 ----~~dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p~ 533 (561)
|++|. -|++|..++.. ++|...|||+...+.
T Consensus 1240 ~yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1240 QYPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 56665 38888888877 899999999987643
No 100
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.74 E-value=6.3e-08 Score=117.15 Aligned_cols=194 Identities=16% Similarity=0.093 Sum_probs=111.9
Q ss_pred CceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 296 NSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 296 ~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
.++||+|+ .+ +...| .....||+.+|+.+.. .|+. +|.... ..|.+++||++||||+.
T Consensus 1054 ~~p~vail-~~pG~N~~--~e~~~Af~~aGf~~~~----v~~~--dl~~~~------------~~l~~~~~lv~~GGFSy 1112 (1310)
T TIGR01735 1054 VRPKVAIL-REQGVNGD--REMAAAFDRAGFEAWD----VHMS--DLLAGR------------VHLDEFRGLAACGGFSY 1112 (1310)
T ss_pred CCceEEEE-ECCCCCCH--HHHHHHHHHhCCCcEE----EEEe--ccccCC------------cchhheeEEEEcCCCCC
Confidence 45899999 66 33333 7788999999998533 2322 221111 24788999999999854
Q ss_pred Cc-------h-------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCC
Q 008567 375 RG-------V-------GGMILAAKYAR-ENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGS 439 (561)
Q Consensus 375 ~~-------~-------~g~i~~ir~a~-e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~ 439 (561)
-+ + ....+.++.+. +.+.++||||.|+|+|+-+.| ++ +.+ +. .| .|+.+..
T Consensus 1113 gD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g--ll--p~~---~~-----~p--~l~~N~s 1178 (1310)
T TIGR01735 1113 GDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE--WI--PGT---EN-----WP--HFVRNNS 1178 (1310)
T ss_pred ccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC--cC--CCC---CC-----Cc--eeeecCC
Confidence 21 1 23455666666 578999999999999963433 21 111 10 01 1211100
Q ss_pred cccCCcccccCc--eeEEEcCCCcccc-cccCCceeEEeeeee-eee-eCcccccccccCCeEEEEE-------------
Q 008567 440 RTHMGSTMRLGS--RRTLFQTPDCVTS-KLYRNAEYVDERHRH-RYE-VNPEAIGVLEEAGLKFVGK------------- 501 (561)
Q Consensus 440 ~~~~G~~mrlG~--~~v~l~~~~s~l~-~iyg~~~~I~~~h~H-rY~-vn~~~v~~le~~gl~v~a~------------- 501 (561)
-|+=. -.+++.++.|.+. .+-|..-.++..|.+ ||. .+++.+..++..|...+-+
T Consensus 1179 -------~~fe~r~~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~ 1251 (1310)
T TIGR01735 1179 -------ERFEARVASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPL 1251 (1310)
T ss_pred -------CCeEEeeeEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCC
Confidence 01100 1233333334443 332322345667766 433 3445555665666554433
Q ss_pred eCCCC--eEEEEEeCCCCcEEEEcccCCCCCCC
Q 008567 502 DETGK--RMEILELPSHPFYVGVQFHPEFKSRP 532 (561)
Q Consensus 502 ~~dg~--~vE~ie~~~~p~~~GvQFHPE~~~~p 532 (561)
|++|. -|++|..++.. ++|...|||+...+
T Consensus 1252 NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1252 NPNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CCCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 56666 38888888877 89999999997664
No 101
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.70 E-value=3.8e-07 Score=85.53 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=62.2
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCcee--eeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIAC--SLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~--~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
..||++ .++.|+...++-++++-++. .+++++.-+.. ++++.++||+|||||....
T Consensus 12 ~VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT------------------~~D~aq~DaLIIPGGEST~ 69 (226)
T KOG3210|consen 12 VVIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT------------------KNDLAQCDALIIPGGESTA 69 (226)
T ss_pred eEEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeecC------------------HHHHhhCCEEEecCCchhH
Confidence 346666 57777888788888766665 44444444432 2678999999999997663
Q ss_pred -----chhHHHHHHHHHHHcC-CCEEEEehhHHHHHHH
Q 008567 376 -----GVGGMILAAKYARENN-IPYLGICLGMQISVIE 407 (561)
Q Consensus 376 -----~~~g~i~~ir~a~e~~-iPvLGICLGmQLL~ie 407 (561)
...++...+.....+. +|+||.|.||-+|.-.
T Consensus 70 mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 70 MSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 2345666666666666 9999999999998643
No 102
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.62 E-value=9.2e-08 Score=93.34 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=59.3
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG--- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~--- 376 (561)
|+|+ +|.... -+.|+.++++..|+++.+ +.+. +.+.++|+|+||||+....
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4566 674221 147888999999987644 4432 2256889999999984321
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008567 377 ---VGGMILAAKYARENNIPYLGICLGMQISVIEF 408 (561)
Q Consensus 377 ---~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~ 408 (561)
...+.+.++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 13467788888889999999999999996653
No 103
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=98.62 E-value=2.6e-09 Score=97.20 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.6
Q ss_pred HHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhh
Q 008567 203 ELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSIL 267 (561)
Q Consensus 203 ~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~ 267 (561)
++||.++++.++|||+.++.+++|+++.+|..|++.++|+++.++||| +|+++||++|.|++++
T Consensus 67 ~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 67 DFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp G-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred cCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 379999999999999999999999999999999999999999999999 9999999999998764
No 104
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.55 E-value=1.8e-07 Score=91.65 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC---ch---hHHHHHHHH
Q 008567 313 YLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR---GV---GGMILAAKY 386 (561)
Q Consensus 313 Y~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~---~~---~g~i~~ir~ 386 (561)
|...+++|+.+|+++.. +.+.. .+.+.++|+|+||||+... .+ .++.+.|+.
T Consensus 13 y~e~~~~l~~~G~~v~~------~s~~~----------------~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~ 70 (198)
T cd03130 13 YPENLELLEAAGAELVP------FSPLK----------------DEELPDADGLYLGGGYPELFAEELSANQSMRESIRA 70 (198)
T ss_pred cHHHHHHHHHCCCEEEE------ECCCC----------------CCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHH
Confidence 67789999999976533 44310 0235569999999986442 11 357788999
Q ss_pred HHHcCCCEEEEehhHHHHHHH
Q 008567 387 ARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 387 a~e~~iPvLGICLGmQLL~ie 407 (561)
+.++++|++|||.|||+|+-.
T Consensus 71 ~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 71 FAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHcCCCEEEEcccHHHHHHH
Confidence 888999999999999999755
No 105
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.47 E-value=2.8e-07 Score=101.29 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=52.9
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC-Cc
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD-RG 376 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~-~~ 376 (561)
+||||+ .. .|+.+++++.+.. .+.+.|+.. + +.|.++|+||||||.-. .+
T Consensus 1 m~iGvl-al-------~sv~~al~~lg~~---~~~vv~~~~-----------~-------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL-DI-------KGSLPCFENFGNL---PTKIIDENN-----------I-------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE-eh-------hhHHHHHHHhcCC---CcEEEEeCC-----------h-------HHhccCCEEEECCCchhhcc
Confidence 379999 34 7889999988862 122344443 1 56889999999998522 11
Q ss_pred -h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 377 -V-GGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 377 -~-~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
+ .++.++++ +.++|+||||.|||||+-.
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 1 33334443 3489999999999999643
No 106
>PHA03366 FGAM-synthase; Provisional
Probab=98.43 E-value=3.1e-06 Score=102.80 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCCceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCC
Q 008567 294 LKNSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGF 372 (561)
Q Consensus 294 ~~~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~ 372 (561)
+..++||||+ .+ +... -.....|+..+|+++.. .++ .+|... ..|.+++||++||||
T Consensus 1025 ~~~~prVaIl-~~pG~N~--~~e~~~Af~~aGf~~~~----v~~--~dL~~~-------------~~l~~f~glv~~GGF 1082 (1304)
T PHA03366 1025 PDKRHRVAVL-LLPGCPG--PHALLAAFTNAGFDPYP----VSI--EELKDG-------------TFLDEFSGLVIGGSS 1082 (1304)
T ss_pred CCCCCeEEEE-ECCCCCC--HHHHHHHHHHcCCceEE----EEe--ecCCCC-------------CccccceEEEEcCCC
Confidence 4456899999 66 3333 37889999999998643 122 222211 228899999999998
Q ss_pred CCC-------ch-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHHHHhc
Q 008567 373 GDR-------GV-------GGMILAAKYAR-ENNIPYLGICL-GMQISVIEFA 409 (561)
Q Consensus 373 G~~-------~~-------~g~i~~ir~a~-e~~iPvLGICL-GmQLL~ie~g 409 (561)
+.. ++ +...++++.+. +.+.++||||. |+|+| .++|
T Consensus 1083 S~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L-~~lg 1134 (1304)
T PHA03366 1083 GAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQIL-FALK 1134 (1304)
T ss_pred CCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHH-HHcC
Confidence 652 12 34556666666 45899999998 99999 4544
No 107
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.41 E-value=3.8e-06 Score=101.58 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCceEEEEEecc-CCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 295 KNSVRIAMVGKY-VGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 295 ~~~~~Iavvgky-~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
..++||||+ .+ +...| .....|++.+|+.+.. .++ .+|... ..|++++||+++|||+
T Consensus 927 ~~~p~VaIl-~~pG~N~~--~e~~~Af~~aGf~~~~----v~~--~dl~~~-------------~~l~~f~glv~~Ggfs 984 (1202)
T TIGR01739 927 DPRHQVAVL-LLPGQSVP--HGLLAALTNAGFDPRI----VSI--TELKKT-------------DFLDTFSGLIIGGASG 984 (1202)
T ss_pred CCCCeEEEE-eCCCCCCH--HHHHHHHHHcCCceEE----EEe--ccCCCC-------------CchhheEEEEEcCcCC
Confidence 346899999 67 33333 7889999999998543 122 222111 2367899999999986
Q ss_pred CCc-------h-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHHHHhc
Q 008567 374 DRG-------V-------GGMILAAKYAR-ENNIPYLGICL-GMQISVIEFA 409 (561)
Q Consensus 374 ~~~-------~-------~g~i~~ir~a~-e~~iPvLGICL-GmQLL~ie~g 409 (561)
..+ + ....+.++.+. +.+.++||||. |+|+| .++|
T Consensus 985 y~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L-~~lg 1035 (1202)
T TIGR01739 985 TLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLL-LALN 1035 (1202)
T ss_pred CCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHH-HHcC
Confidence 521 1 24455566666 45899999998 99999 4544
No 108
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.15 E-value=8.1e-06 Score=81.70 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~ 80 (561)
||-|||| |+-.++||..+++.|++.|+++|++|..+|- .++|-.. ++ ++..|-|.-.+.+..+.
T Consensus 2 ~~~ifIt-~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP-------------i~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFIT-GTDTSVGKTVVSRALLQALASQGKTVAGYKP-------------VAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEECc-------------cccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 4679999 9999999999999999999999999988874 6666432 22 23344444444444443
Q ss_pred CCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccc--cccH
Q 008567 81 RLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDI--ESMP 158 (561)
Q Consensus 81 ~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdi--e~~~ 158 (561)
..+... + +--.+..-...++. + +.+. .++|.+++++++ .++|+||||+.|.+..- ....
T Consensus 66 ~~~~~~-~-~p~~~~~~~a~~~~----~---~~i~--~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~~~~~ 126 (231)
T PRK12374 66 ELPYEA-V-NPIALSEEESSVAH----S---CPIN--YTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMNDLRP 126 (231)
T ss_pred CCCHHh-c-cCeecCCCcChHHc----C---CcCC--HHHHHHHHHHHH--------hhCCEEEEECCCCcceeccCccc
Confidence 322110 0 00001000001111 1 2221 467888888876 68999999999944211 1223
Q ss_pred HHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEee
Q 008567 159 FIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRS 218 (561)
Q Consensus 159 f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~ 218 (561)
+.+.+.++ +-- ++.|. + ...|. .-=|.-+++.+++.|+..-++|+-.
T Consensus 127 ~~d~~~~~----~~p-vilV~----~--~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~ 173 (231)
T PRK12374 127 LSEWVVQE----QLP-VLMVV----G--IQEGC--INHALLTAQAIANDGLPLIGWVANR 173 (231)
T ss_pred HHHHHHHh----CCC-EEEEE----C--CCcCh--HHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 44555553 211 22221 0 00111 1223446677888999999999744
No 109
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=97.98 E-value=2.9e-05 Score=76.80 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=102.0
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLT 83 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~ 83 (561)
|||| |+-++.||..+++.|++.|+++|++|..+|- .++|.-... .|=|.-...++.++...
T Consensus 2 i~I~-~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP-------------v~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVT-GTDTDVGKTVVTAALAQALREAGYSVAGYKP-------------VQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEE-eCCCCcCHHHHHHHHHHHHHHcCCceEEEee-------------EecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 7899 9999999999999999999999999999884 344421100 12222223343333221
Q ss_pred CCCcccccchhhHH----hhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccc--ccc
Q 008567 84 KNNNITTGKIYQSV----LEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDI--ESM 157 (561)
Q Consensus 84 ~~~~~tsGk~y~~v----i~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdi--e~~ 157 (561)
. ...++-.|... +..... |. .+ -.+.|++.+++++ +++|+||||+.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~----~~--~~---~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALE----GV--AI---DLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHh----CC--CC---CHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11112212111 111112 22 11 2577888888876 67999999999876432 222
Q ss_pred HHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCC----Cchhhhccccc
Q 008567 158 PFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPL----LENTKEKLSQF 233 (561)
Q Consensus 158 ~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l----~~~~~~kisl~ 233 (561)
-.++.++++.. . ++.+.= +.+ +. ..-+.-+++.++..|+...++|+-...+- .....+.+...
T Consensus 124 ~~adl~~~l~~----p-vilV~~---~~~---~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~ 190 (222)
T PRK00090 124 TLADLAKQLQL----P-VILVVG---VKL---GC--INHTLLTLEAIRARGLPLAGWVANGIPPEPGLRHAENLATLERL 190 (222)
T ss_pred cHHHHHHHhCC----C-EEEEEC---CCC---cH--HHHHHHHHHHHHHCCCCeEEEEEccCCCcchhHHHHHHHHHHHH
Confidence 33334444321 1 222220 111 11 22356677788888998888886432221 22334444444
Q ss_pred CCCCCCCeee
Q 008567 234 CHVPIGNILN 243 (561)
Q Consensus 234 ~~v~~~~Vi~ 243 (561)
..++.-++++
T Consensus 191 ~gi~vlg~ip 200 (222)
T PRK00090 191 LPAPLLGELP 200 (222)
T ss_pred cCCCeEEecC
Confidence 4555444443
No 110
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=97.95 E-value=7e-05 Score=74.73 Aligned_cols=175 Identities=24% Similarity=0.349 Sum_probs=117.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCccc--ccCCccccccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV--DLDLGNYERFL 78 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~--dldlg~yerf~ 78 (561)
||-+||| |+=-|+||-++++.|++.|+.+|++|..+|- .|=|. .|. +=|.=.++|+.
T Consensus 2 ~~~~fVt-GTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP-------------VqsG~-------~~~~~~~D~~~l~~~~ 60 (223)
T COG0132 2 MKRFFVT-GTDTGVGKTVVSAALAQALKQQGYSVAGYKP-------------VQTGS-------EETAENSDALVLQRLS 60 (223)
T ss_pred CceEEEE-eCCCCccHHHHHHHHHHHHHhCCCeeEEECc-------------eeeCC-------CCCCCCchHHHHHHhc
Confidence 6889999 9999999999999999999999999999986 22222 111 24555666766
Q ss_pred CCCCCCCCcccccchh----hHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcc---
Q 008567 79 DVRLTKNNNITTGKIY----QSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTV--- 151 (561)
Q Consensus 79 ~~~l~~~~~~tsGk~y----~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtv--- 151 (561)
++.++. ..++--.| +-.|..+.+ |++ |. .++|...+..+. .++|.++||+.|-+
T Consensus 61 ~~~~~~--~~~~py~f~~P~sPhlAa~~e----g~~---I~--~~~l~~~l~~l~--------~~~d~vlVEGAGGl~vP 121 (223)
T COG0132 61 GLDLSY--ELINPYRFKEPLSPHLAAELE----GRT---ID--LEKLSQGLRQLL--------KKYDLVLVEGAGGLLVP 121 (223)
T ss_pred CCCccc--ccccceecCCCCCcHHHHhhc----CCc---cc--HHHHHHHHHhhh--------cccCEEEEeCCCceeee
Confidence 666541 11222222 223333333 667 33 577777777775 58999999999987
Q ss_pred -ccccccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcc
Q 008567 152 -GDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKL 230 (561)
Q Consensus 152 -gdie~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~ki 230 (561)
.| ...|+.-++|++..+ ++.+.+ .|.+-+- |=-|++.+++.||..-++|+-+..+.+.+.....
T Consensus 122 l~~--~~~~~D~~~~~~lpv----ILV~~~----~LGtINH-----tlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~ 186 (223)
T COG0132 122 LTE--EYTFADLAVQLQLPV----ILVVGI----KLGTINH-----TLLTVEALRARGLPLAGWVANGINPELDHYAEIN 186 (223)
T ss_pred cCC--cccHHHHHHHcCCCE----EEEecC----CccHHHH-----HHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHH
Confidence 33 268888899988653 222222 1221111 2237788999999999999988777766655544
No 111
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.92 E-value=0.00017 Score=74.67 Aligned_cols=195 Identities=13% Similarity=0.215 Sum_probs=97.9
Q ss_pred CceEEEEEeccCCCc-ccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc-CCCcchhhHHHhc--cCCCeEEEcCC
Q 008567 296 NSVRIAMVGKYVGLA-DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK-LTPKDHAAAWETL--RNAECVLVPGG 371 (561)
Q Consensus 296 ~~~~Iavvgky~~~~-DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~-~d~~~~~~~~~~l--~~~DGIilpGG 371 (561)
+.++|+|+ +.--.+ ++=..+++.|...+.. |++.|+...+-...+.. ..-.++...++.+ ..+||+||+|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tplq----v~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPLQ----VEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 56899999 663222 2222345554444443 44556655432221110 0001222234555 47999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHH-HHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccC
Q 008567 372 FGD-------RGVGGMILAAKYARENNIPYLGICLGMQIS-VIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHM 443 (561)
Q Consensus 372 ~G~-------~~~~g~i~~ir~a~e~~iPvLGICLGmQLL-~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~ 443 (561)
|=. .-++.+.+.+.++.++..+.|.||.|.|.. ..-+|-.-. .+++
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~--------------------~l~~------ 161 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKY--------------------PLPE------ 161 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----E--------------------EEEE------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcc--------------------cCCC------
Confidence 643 236788899999999999999999999994 344442210 0111
Q ss_pred CcccccCceeEEE-cCCCcccccccCCceeEEeeeeeee-eeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEE
Q 008567 444 GSTMRLGSRRTLF-QTPDCVTSKLYRNAEYVDERHRHRY-EVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVG 521 (561)
Q Consensus 444 G~~mrlG~~~v~l-~~~~s~l~~iyg~~~~I~~~h~HrY-~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~G 521 (561)
-.+|.++..+ .+.++++.++- . .+..-|. || +++.+.+. +..++++++.+++.. +-.+..+++. .+=
T Consensus 162 ---KlfGVf~~~~~~~~~pLl~Gfd-d--~f~~PhS-R~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r-~vf 230 (298)
T PF04204_consen 162 ---KLFGVFEHRVLDPDHPLLRGFD-D--TFFAPHS-RYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGR-QVF 230 (298)
T ss_dssp ---EEEEEEEEEES-SS-GGGTT---S--EEEEEEE-EEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCT-EEE
T ss_pred ---cceeceeeeccCCCChhhcCCC-c--cccCCcc-cccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCC-EEE
Confidence 1235556663 34457777663 1 2322332 33 34444442 368999999987765 7888888887 577
Q ss_pred EcccCCCCCCC
Q 008567 522 VQFHPEFKSRP 532 (561)
Q Consensus 522 vQFHPE~~~~p 532 (561)
+|-|||+....
T Consensus 231 i~GH~EYd~~T 241 (298)
T PF04204_consen 231 ITGHPEYDADT 241 (298)
T ss_dssp E-S-TT--TTH
T ss_pred EeCCCccChhH
Confidence 89999998753
No 112
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.91 E-value=5.7e-05 Score=63.23 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc----hhHHHHHHHHH
Q 008567 312 SYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG----VGGMILAAKYA 387 (561)
Q Consensus 312 aY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~----~~g~i~~ir~a 387 (561)
.+....++|+.+++.+.+ +......... .....++|+|++|||+..+. ....++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 356788899999865543 4433211000 02357899999999987653 26788889999
Q ss_pred HHcCCCEEEEehhHHHH
Q 008567 388 RENNIPYLGICLGMQIS 404 (561)
Q Consensus 388 ~e~~iPvLGICLGmQLL 404 (561)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 98999999999999999
No 113
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.84 E-value=1.7e-05 Score=74.93 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred HhccCCCeEEEcCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008567 358 ETLRNAECVLVPGGFGDR------GVGGMILAAKYARENNIPYLGICLGMQISVIEF 408 (561)
Q Consensus 358 ~~l~~~DGIilpGG~G~~------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~ 408 (561)
+.+.++|+|+||||+-.. ...++.+.|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 456799999999997653 125688999999999999999999999997653
No 114
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.81 E-value=0.00011 Score=70.89 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=43.8
Q ss_pred ccCCCeEEEcCCCCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 008567 360 LRNAECVLVPGGFGD-------RGVGGMILAAKYARENNIPYLGICLGMQISVIEFARS 411 (561)
Q Consensus 360 l~~~DGIilpGG~G~-------~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~ 411 (561)
..++||+||+|.+-. .-|+.+.+.+.+++++..|+||||.|+|++...++|-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 468999999998642 2356788999999999999999999999998887754
No 115
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.79 E-value=4.3e-05 Score=75.64 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=62.0
Q ss_pred CCceEEEEEeccCCCcccH-HHHHHHHHHc-CceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCC
Q 008567 295 KNSVRIAMVGKYVGLADSY-LSVVKALLHA-CIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGF 372 (561)
Q Consensus 295 ~~~~~Iavvgky~~~~DaY-~Si~~aL~~a-g~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~ 372 (561)
+..++|++|.-=....+.| .++.++++.. |+++... .-.+.+ +..+.|.++|+|++|||-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~---~~~~~~---------------~~~~~l~~ad~I~l~GG~ 90 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL---HLFDTE---------------DPLDALLEADVIYVGGGN 90 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE---eccCcc---------------cHHHHHhcCCEEEECCch
Confidence 3557999995222333344 4688889999 8876542 111111 112678999999999962
Q ss_pred CCC---ch--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 373 GDR---GV--GGMILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 373 G~~---~~--~g~i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
-.. .+ .++.++++.+.+++.|++|||.|||++.
T Consensus 91 ~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 91 TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 111 11 3566778877788999999999999994
No 116
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=97.76 E-value=9.1e-05 Score=72.04 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=103.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVR 81 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~ 81 (561)
|-|||+ |+-.++||..+++.|++.|+++|.+|..+|- .++|.. .|=|.-...++.+..
T Consensus 1 r~i~I~-~t~t~vGKT~vslgL~~~l~~~g~~v~~~KP-------------i~~~~~--------~d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFIT-GTDTGVGKTVVSLGLARALRRRGIKVGYFKP-------------IQTGPE--------DDEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEE-ESSSSSSHHHHHHHHHHHHHHTTSEEEEEEE-------------EEESCC--------CSSHHHHHHHHCCTC
T ss_pred CEEEEE-eCCCCCCHHHHHHHHHHHHHhCCCceEEEee-------------eEecCC--------CCchHHHHHHHhCCC
Confidence 468999 9999999999999999999999999988875 566654 122444456666554
Q ss_pred CCCC--CcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcccc--cccc
Q 008567 82 LTKN--NNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGD--IESM 157 (561)
Q Consensus 82 l~~~--~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgd--ie~~ 157 (561)
.... +-++-.......+..++.| ..++ .+.|+ +++++ .+.|++|||+.|.+.. .+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~~~~~~~ 119 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMVPIFSGD 119 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTSECCTTE
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCcccccCh
Confidence 4322 2222233333344444443 2222 33333 46665 5789999999998842 2334
Q ss_pred HHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCC--ccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCC
Q 008567 158 PFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKP--TQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCH 235 (561)
Q Consensus 158 ~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkp--tq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~ 235 (561)
-.++-++.+... +++| .. .+..| + +..+++.++..|+..-++|+-...+- +..+.+..+..
T Consensus 120 ~n~dia~~L~a~-----vIlV-------~~--~~~g~-i~~~l~~~~~~~~~g~~v~GvI~N~~~~~--~~~~~l~~~~~ 182 (199)
T PF13500_consen 120 LNADIAKALGAP-----VILV-------AS--GRLGT-INHTLLTIEALKQRGIRVLGVILNRVPEP--ENLEALREKSG 182 (199)
T ss_dssp EHHHHHHHHT-E-----EEEE-------EE--SSTTH-HHHHHHHHHHHHCTTS-EEEEEEEECTCC--HHHHHHHHHHC
T ss_pred HHHHHHHHcCCC-----EEEE-------eC--CCCCC-HHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHhCC
Confidence 455666665443 2222 21 22222 1 23466778889999999887552221 33444444444
Q ss_pred CCCCC
Q 008567 236 VPIGN 240 (561)
Q Consensus 236 v~~~~ 240 (561)
++.-+
T Consensus 183 i~vlg 187 (199)
T PF13500_consen 183 IPVLG 187 (199)
T ss_dssp CEECE
T ss_pred CCEEE
Confidence 44333
No 117
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.75 E-value=3.3e-05 Score=69.30 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=51.9
Q ss_pred EEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---
Q 008567 300 IAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG--- 376 (561)
Q Consensus 300 Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~--- 376 (561)
|+|--+.+....+.+.+.+.|+... . +..+..+++... .|+ .++|.||+|||.-...
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~------v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-A------VSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-c------eeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHH
Confidence 3333333334444566777777654 1 223455443221 122 5899999999643321
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008567 377 --VGGMILAAKYARENNIPYLGICLGMQIS 404 (561)
Q Consensus 377 --~~g~i~~ir~a~e~~iPvLGICLGmQLL 404 (561)
..+ .+++++..+++.|+||||+|.=+.
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 134 788888888999999999998776
No 118
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.58 E-value=0.00021 Score=57.06 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch----hHHHHHHHHHH
Q 008567 313 YLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV----GGMILAAKYAR 388 (561)
Q Consensus 313 Y~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~----~g~i~~ir~a~ 388 (561)
+..+.+.++..++.+.+ +......... .....++|++++|||...... ...++.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE------EeCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 35678888888866544 2222110000 023578999999999877532 56778888888
Q ss_pred HcCCCEEEEehhHHHH
Q 008567 389 ENNIPYLGICLGMQIS 404 (561)
Q Consensus 389 e~~iPvLGICLGmQLL 404 (561)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 119
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.43 E-value=0.0014 Score=67.74 Aligned_cols=196 Identities=12% Similarity=0.184 Sum_probs=109.9
Q ss_pred CceEEEEEeccCCCc-ccHHHHHHHHHHcCceeeeeeeeEeecCCCccccccc-CCCcchhhHHHhc--cCCCeEEEcCC
Q 008567 296 NSVRIAMVGKYVGLA-DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAK-LTPKDHAAAWETL--RNAECVLVPGG 371 (561)
Q Consensus 296 ~~~~Iavvgky~~~~-DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~-~d~~~~~~~~~~l--~~~DGIilpGG 371 (561)
++++|+|+ ..--.+ ++=..+++.|...... |++.|+..++-...+.. ....+|-..++++ ..+||+||+|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplq----v~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQ----VNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 45899999 663222 2223466666554443 34455654443322210 0001222223444 58999999997
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCC
Q 008567 372 FGD-------RGVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMG 444 (561)
Q Consensus 372 ~G~-------~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G 444 (561)
|=. .-|+.+.+.+.++.++-...|.||.|.|.....+ .|++- . .++++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~----yGI~K---~------------~l~~K------ 163 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYF----YGIPK---Y------------TLPEK------ 163 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH----cCCCc---c------------ccCCc------
Confidence 633 1367888999999999999999999999964332 12210 0 01111
Q ss_pred cccccCceeEEEcCCCcccccccCCceeEE-eeeeeeeeeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 008567 445 STMRLGSRRTLFQTPDCVTSKLYRNAEYVD-ERHRHRYEVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQ 523 (561)
Q Consensus 445 ~~mrlG~~~v~l~~~~s~l~~iyg~~~~I~-~~h~HrY~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQ 523 (561)
.+|.++..+.++++++.++- ....+. +||. +++.+.+.. ..++++++.+++.. +-.+..++.. -+=++
T Consensus 164 ---lfGVf~h~~~~~~pL~rGfd-d~f~~PhSR~t---~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r-~vfi~ 232 (300)
T TIGR01001 164 ---LSGVYKHDIAPDSLLLRGFD-DFFLAPHSRYA---DFDAEDIDK--VTDLEILAESDEAG-VYLAANKDER-NIFVT 232 (300)
T ss_pred ---eEEeecCccCCCCccccCCC-CccccCCCCCC---CCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCC-EEEEc
Confidence 12222322224445555542 122221 2332 244343332 36899999887665 7788878776 35599
Q ss_pred ccCCCCCCC
Q 008567 524 FHPEFKSRP 532 (561)
Q Consensus 524 FHPE~~~~p 532 (561)
-|||+....
T Consensus 233 GH~EYd~~T 241 (300)
T TIGR01001 233 GHPEYDAYT 241 (300)
T ss_pred CCCccChhH
Confidence 999998753
No 120
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=97.31 E-value=0.0012 Score=62.14 Aligned_cols=34 Identities=38% Similarity=0.523 Sum_probs=31.3
Q ss_pred EEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 5 LVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 5 ~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||| |+-.|.||..+++.|++.|+++|++|..+|-
T Consensus 1 fI~-~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP 34 (166)
T TIGR00347 1 FVT-GTDTGVGKTVASSALAAKLKKAGYSVGYYKP 34 (166)
T ss_pred Cee-cCCCCccHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 678 8999999999999999999999999988663
No 121
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.23 E-value=0.0014 Score=75.91 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=35.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
||-|||+ |+-++.||..++.+|+++|+++|++|..||
T Consensus 2 ~k~l~I~-~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLA-PTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEE-ECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 5789999 999999999999999999999999999999
No 122
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.22 E-value=0.028 Score=60.28 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=36.9
Q ss_pred ccCCCeEEEcCCCCCCc---hhHH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 360 LRNAECVLVPGGFGDRG---VGGM-ILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 360 l~~~DGIilpGG~G~~~---~~g~-i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
..+++.+|+|||...+. +.+. .+.||..++++.-+||||.|--+..
T Consensus 47 ~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 47 QSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred ccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 35789999999875542 3333 7889999999999999999988764
No 123
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.97 E-value=0.0082 Score=59.28 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=35.2
Q ss_pred cCCCeEEEcCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 361 RNAECVLVPGGFGDR------GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 361 ~~~DGIilpGG~G~~------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
..+|-+++.||-... ....+...++.++++++|+|.||-|.|+|.-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 578977777764321 2234567889999999999999999999964
No 124
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.88 E-value=0.0053 Score=57.69 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 362 NAECVLVPGGFGDR---GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 362 ~~DGIilpGG~G~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
++|+|++|||.+.. ......+.++++.++++|+.|||.|.++|+-
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 68999999997632 2356888899999999999999999999964
No 125
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.78 E-value=0.0022 Score=63.96 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=41.2
Q ss_pred ccCCCeEEEcCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 008567 360 LRNAECVLVPGGFGDR--------------GVGGMILAAKYARENNIPYLGICLGMQISVIEF 408 (561)
Q Consensus 360 l~~~DGIilpGG~G~~--------------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~ 408 (561)
..++|+|+||||+|.. ..+...+.++++.++++|+..||-|-++|+-++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 4689999999998742 135688899999999999999999999997654
No 126
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.77 E-value=0.0023 Score=63.64 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=43.5
Q ss_pred ccCCCeEEEcCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--cccccc
Q 008567 360 LRNAECVLVPGGFGDR--------------GVGGMILAAKYARENNIPYLGICLGMQISVIEF--ARSVLG 414 (561)
Q Consensus 360 l~~~DGIilpGG~G~~--------------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~--g~~v~g 414 (561)
+.++|+|+||||++.. ..+..++.++.+.++++|+.+||-|-++|+-+. |+++.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~ 150 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTI 150 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEc
Confidence 4579999999997631 134688889999999999999999999997655 455543
No 127
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.68 E-value=0.012 Score=55.63 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=33.3
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|+ +.-.|.||..+|+.|+..|.+.|++|..+-.||-
T Consensus 2 i~v~-s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 2 IAVM-SGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EEEe-cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4555 6778999999999999999999999999888764
No 128
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.63 E-value=0.0058 Score=61.64 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=69.6
Q ss_pred ChhHHHHHHhhhcCCCCceEEEEEeccCCCc---ccHH-HHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhh
Q 008567 280 NLQAWTKRAETYDNLKNSVRIAMVGKYVGLA---DSYL-SVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAA 355 (561)
Q Consensus 280 ~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~---DaY~-Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~ 355 (561)
.++.|.++...+-. +.+||++| -+.+.. +.|. ++.++++..|+++.. +...+ +
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~--------------d 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA--------------D 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------h
Confidence 44556566555422 35789999 564432 3343 477788888987543 22110 1
Q ss_pred HHHhccCCCeEEEcCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 356 AWETLRNAECVLVPGGFGDR-----GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 356 ~~~~l~~~DGIilpGG~G~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
..+.|.++|+|+++||--.. ...++.+.++.+.++++|+.|+|.|.-+++-.
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhcc
Confidence 12568899999999984332 12467788888889999999999999887544
No 129
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=96.53 E-value=0.014 Score=53.52 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=31.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+|||| .|.||-.+++.|.+.|+++|++|..+|..+.
T Consensus 3 ~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 3 GFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 57774 6699999999999999999999999998654
No 130
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.042 Score=63.51 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred CceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 296 NSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 296 ~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
..+||||+-.-+. ..+..+.-++..+|++..- + .-.+|-... -.|+++-||.++|||...
T Consensus 1057 ~~PkVAilREeGv--Ng~rEMa~af~~AgF~~~D---V---tmtDlL~G~------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1057 TAPKVAILREEGV--NGDREMAAAFYAAGFETVD---V---TMTDLLAGR------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCCceEEeecccc--ccHHHHHHHHHHcCCceee---e---eeehhhcCc------------eeHhHhcceeeecCcchH
Confidence 3579999933332 3468899999999997621 1 111221111 236789999999998542
Q ss_pred -------ch-------hHHHHHHHHHHH-cCCCEEEEehhHHHHHH
Q 008567 376 -------GV-------GGMILAAKYARE-NNIPYLGICLGMQISVI 406 (561)
Q Consensus 376 -------~~-------~g~i~~ir~a~e-~~iPvLGICLGmQLL~i 406 (561)
+| +....-...+.. .+.=-||||.|.|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 23 334444444332 35667999999999964
No 131
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.47 E-value=0.0038 Score=59.82 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=38.6
Q ss_pred cCCCeEEEcCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 361 RNAECVLVPGGFGDR---GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 361 ~~~DGIilpGG~G~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
..+|+|+||||++.. ........++.+.++++|+.|||.|.++|+.+
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 368999999997642 23567888999999999999999999998653
No 132
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.17 E-value=0.052 Score=54.28 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=36.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|.|+ +.--|+||..+|+.|+..|..+|++|..+-.||-
T Consensus 2 ~ii~v~-s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVIT-SGKGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEe-cCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 778888 7788999999999999999999999999999884
No 133
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.01 E-value=0.042 Score=50.35 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=60.6
Q ss_pred eEEEEEeccCCCc-ccHHHHHHHHHHcCceeeeeeeeEeecCCCcccc-cccCCCc-chhhHHHhccCCCeEEEcCCCCC
Q 008567 298 VRIAMVGKYVGLA-DSYLSVVKALLHACIACSLKPSIDWIAASDLEDE-SAKLTPK-DHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 298 ~~Iavvgky~~~~-DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~-~~~~d~~-~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
.||+|+ -+.+.. -.+....+.|+.+++++.+ .......+... .....+. .+++ ....++|+|++|||.+.
T Consensus 2 ~~v~il-l~~g~~~~e~~~~~~~~~~a~~~v~v----vs~~~~~v~s~~g~~i~~~~~l~~--~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGIL-VADGVDAAELSALKAALKAAGANVKV----VAPTLGGVVDSDGKTLEVDQTYAG--APSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEE-EcCCcCHHHHHHHHHHHHHCCCEEEE----EecCcCceecCCCcEEecceeecC--CChhhcCEEEECCCccC
Confidence 467777 454433 2345688888888876644 11111111100 0000000 1110 01135899999998765
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 375 R----GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 375 ~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
. .....++.++++.++++|+.+||-|-.+|+.
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~ 110 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEA 110 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHH
Confidence 2 3456888899999999999999999999854
No 134
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.95 E-value=0.045 Score=58.08 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=35.8
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
.|-|+| . +|.||+.++..+...|+.+|++|..+.+||.-.+
T Consensus 58 ~igi~G-~-~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 58 RIGITG-V-PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred EEEEEC-C-CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 567774 3 8999999999999999999999999999997544
No 135
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.94 E-value=0.052 Score=52.85 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=39.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
+|.|+|+ +.-.|.||..+++.|+..|.++|++|..+-.||+-
T Consensus 17 ~kvI~v~-s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLIT-SVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEe-cCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5789999 88899999999999999999999999999998874
No 136
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.83 E-value=0.067 Score=53.23 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|.|+ +.=-|+||..+|+.|+..|..+|++|..+.+||.
T Consensus 1 ~ii~v~-~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 1 RIITIA-SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred CEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 345666 6778999999999999999999999999999984
No 137
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=95.83 E-value=0.013 Score=55.08 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=38.3
Q ss_pred cCCCeEEEcCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 361 RNAECVLVPGGFGDR---GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 361 ~~~DGIilpGG~G~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
.++|+|++|||++.. .....++.++++.++++|+.|||.|-++|+-
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~ 109 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLIS 109 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHh
Confidence 368999999998543 2356788899999999999999999999854
No 138
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.74 E-value=0.016 Score=58.37 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=40.4
Q ss_pred ccCCCeEEEcCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 360 LRNAECVLVPGGFGD----RGVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 360 l~~~DGIilpGG~G~----~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
..++|+|+||||.|. +..+.+.+.++++.++++|+-.||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 468999999999764 234668899999999999999999999998654
No 139
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.73 E-value=0.038 Score=57.09 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=35.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
||.|-|+|- ||-||..++..|.+.|+++| +|..+|.||
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 788888955 89999999999999999999 999999998
No 140
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.65 E-value=0.054 Score=53.91 Aligned_cols=41 Identities=34% Similarity=0.557 Sum_probs=37.9
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
||.|.|+ +-=.|.||..+|..||..|..+|++|-.+-.||.
T Consensus 1 m~iI~v~-s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEE-eCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6888888 7778999999999999999999999999999985
No 141
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.62 E-value=0.033 Score=46.04 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=29.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|+++|.- |.||+.+++.+++.|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5677444 99999999999999999999999877
No 142
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.37 E-value=0.14 Score=52.02 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=37.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+|.|.|+ +--.|+||..+|+.|+..|..+|++|..+=+||.
T Consensus 2 ~kviav~-s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 2 ARIIVVT-SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred ceEEEEE-eCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3788888 7788999999999999999999999999999995
No 143
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.24 E-value=0.15 Score=47.72 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=32.7
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.++|. +|.||..++..++..|+.+|.+|..+..||.
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 456644 7899999999999999999999999999984
No 144
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.23 E-value=0.029 Score=53.41 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=34.7
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
|+|+ +.-.|.||..+|+.|+..|..+|++|..+..||.-
T Consensus 1 I~v~-~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 1 IAVT-SGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp EEEE-ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CEEE-cCCCCccHHHHHHHHHhccccccccccccccCccc
Confidence 6777 78899999999999999999999999999998754
No 145
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.13 E-value=0.016 Score=53.75 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=36.9
Q ss_pred ccCCCeEEEcCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 360 LRNAECVLVPGGFGD----RGV-GGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 360 l~~~DGIilpGG~G~----~~~-~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
..++|+|+||||.+. +.. +.+...++++.++++|+.+||-|-.+|+.
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~ 86 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAA 86 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhc
Confidence 356999999999873 212 67889999999999999999999987744
No 146
>PRK10867 signal recognition particle protein; Provisional
Probab=95.07 E-value=0.25 Score=54.29 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHC-CCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKAC-GLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~-g~~v~~~K~dpy 42 (561)
+.|+++| ..|.||..+++-|+..|+.+ |++|..+-+|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4688885 89999999999999999999 999999999986
No 147
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.04 E-value=0.24 Score=54.32 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
+.|+++| ..|.||..+++.|+..|+.+|++|..+-+|||=
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4788885 699999999999999999999999999998874
No 148
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=95.03 E-value=0.028 Score=54.09 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=40.0
Q ss_pred ccCCCeEEEcCC-CCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 360 LRNAECVLVPGG-FGDRG---VGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 360 l~~~DGIilpGG-~G~~~---~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
..++|+|++||| .|... .+..+..++++.++++|+..||-|-++|.-
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ 114 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAA 114 (188)
T ss_pred HhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhc
Confidence 358999999999 66642 267899999999999999999999999943
No 149
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.95 E-value=0.2 Score=52.23 Aligned_cols=43 Identities=33% Similarity=0.491 Sum_probs=37.5
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
++.|.|+|. .|.||..++..++..|..+|++|..+.+||+-+.
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 367888854 8999999999999999999999999999996543
No 150
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.89 E-value=0.14 Score=52.17 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|+||++|. .|.||..+|++++..+.+.|++|-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888854 8999999999999999999999999999984
No 151
>PRK04155 chaperone protein HchA; Provisional
Probab=94.72 E-value=0.043 Score=57.07 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=39.2
Q ss_pred ccCCCeEEEcCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 360 LRNAECVLVPGGFGD----RGVGGMILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 360 l~~~DGIilpGG~G~----~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
..++|+|+||||.|. +..+.+.+.++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 468999999999775 2346788999999999999999999998773
No 152
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.55 E-value=0.061 Score=51.01 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=38.6
Q ss_pred cCCCeEEEcCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 361 RNAECVLVPGGFGD--RGVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 361 ~~~DGIilpGG~G~--~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
.++|.|+||||+.. ...+...+.++.+.+++.++.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 57899999999753 23466888999999999999999999999965
No 153
>PHA02518 ParA-like protein; Provisional
Probab=94.49 E-value=0.14 Score=49.45 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=35.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
|.|.|+ +.=-|+||..+|..|+..|.++|++|..+-+||.-
T Consensus 1 ~ii~v~-~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 1 KIIAVL-NQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CEEEEE-cCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 345555 66678999999999999999999999999999863
No 154
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.39 E-value=0.076 Score=50.82 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=40.1
Q ss_pred hccCCCeEEEcCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 359 TLRNAECVLVPGGFGDR---GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
.+.++|.|++|||.+.. ..+..++.++.+.+++.++.+||-|-++|+.
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 35678999999997653 3467889999998899999999999999854
No 155
>PRK14974 cell division protein FtsY; Provisional
Probab=94.37 E-value=0.35 Score=51.44 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=35.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|+++| ..|.||..+++.|+..|+.+|++|..+-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4688885 88999999999999999999999999888766
No 156
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.25 E-value=0.061 Score=53.58 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=40.0
Q ss_pred ccCCCeEEEcCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 360 LRNAECVLVPGGFGDR----GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 360 l~~~DGIilpGG~G~~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
+.++|+|+||||.+.. ..+...+.++.+.++++|+.+||-|-++|+-+
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 3579999999998642 34678899999999999999999999998543
No 157
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.10 E-value=0.18 Score=49.68 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=60.9
Q ss_pred CceEEEEEeccCCC-ccc-HHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 296 NSVRIAMVGKYVGL-ADS-YLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 296 ~~~~Iavvgky~~~-~Da-Y~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
...+|+++. .... .+. ...+.++++..|+.... +..++..+ + .+..+.|.++|+|+++||--
T Consensus 28 ~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~---~~~~~~~~--------~----~~~~~~l~~ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVH---LLLIDTAN--------D----PDVVARLLEADGIFVGGGNQ 91 (210)
T ss_pred CCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEE---EeccCCCC--------C----HHHHHHHhhCCEEEEcCCcH
Confidence 457999994 5322 222 34588889999987644 22332210 0 12346789999999999732
Q ss_pred CC---ch--hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 374 DR---GV--GGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 374 ~~---~~--~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
.. .+ .+..+.++....++.|+.|+|.|..++.-
T Consensus 92 ~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 92 LRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred HHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 21 11 22556666666689999999999999853
No 158
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=94.08 E-value=0.08 Score=53.34 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=38.9
Q ss_pred ccCCCeEEEcCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 360 LRNAECVLVPGGFGDR----GVGGMILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 360 l~~~DGIilpGG~G~~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
..++|+|++|||.|.. ..+.+.+.++++.++++|+-.||-|-++|.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 3689999999997653 346788899999999999999999998773
No 159
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.04 E-value=0.59 Score=51.36 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=32.5
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHH-HCCCeeeEeecCcc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLK-ACGLRVTSIKIDPY 42 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~-~~g~~v~~~K~dpy 42 (561)
.|+++| ..|.||..+++.|+..|+ .+|++|..+-+|+|
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 466663 578999999999999987 68999999999884
No 160
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.03 E-value=0.092 Score=50.66 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=39.0
Q ss_pred hccCCCeEEEcCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 359 TLRNAECVLVPGGFGDR------GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
...++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|..+|+-
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 34678999999986542 2356788899888999999999999999854
No 161
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.94 E-value=0.46 Score=47.76 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
||.|.|. +-==|+||..++..|+..|..+|++|..+-.||--|
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 6777776 666789999999999999999999999999998744
No 162
>PRK13768 GTPase; Provisional
Probab=93.89 E-value=0.085 Score=53.71 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|+|+ |- +|.||..++..+...|+..|.+|..+.+||-
T Consensus 3 ~~i~v~-G~-~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFL-GT-AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEE-CC-CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 445555 55 9999999999999999999999999999983
No 163
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=0.8 Score=49.91 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
+.|++. |. .|.||..+++.|+..|..+|++|..+-.|||-
T Consensus 242 ~vI~LV-Gp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALI-GP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEE-CC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 467888 44 99999999999999999999999999998774
No 164
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=93.83 E-value=0.09 Score=48.85 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=38.8
Q ss_pred cCCCeEEEcCCCC-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 361 RNAECVLVPGGFG-DR---GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 361 ~~~DGIilpGG~G-~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
.++|.|+||||.+ .. ..+..++.++.+.++++++.+||-|-.+|+-+
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 5899999999983 22 24567888999999999999999999998653
No 165
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.60 E-value=0.62 Score=47.88 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=93.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVR 81 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~ 81 (561)
+.|+|+ ....|.||+.+|+.|+..|...|+||-.+-.|=|- |..| ||+++.
T Consensus 58 ~~I~V~-S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~g--------ps~~--------------------~~l~~~ 108 (265)
T COG0489 58 NVIAVT-SGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRG--------PSIP--------------------RMLGLE 108 (265)
T ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCC--------CchH--------------------HHhCCC
Confidence 578888 66789999999999999999999999998776442 2111 222221
Q ss_pred CC-CCCcccccchhhHHhhhhh-c---CCCCCCeeEEecccH------HHHHHHHHHhhccCCCCCCCCCCEEEEecCCc
Q 008567 82 LT-KNNNITTGKIYQSVLEKER-K---GDYLGKTVQVVPHIT------DAIKNWIESVAVIPVDGKEGPADVCVIELGGT 150 (561)
Q Consensus 82 l~-~~~~~tsGk~y~~vi~~er-~---g~y~g~tvq~iph~~------~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGt 150 (561)
-. .-.+.-.|+.+..++..-+ + -.++|. .|++| ..+++.|..+. +..+|++||+..=-
T Consensus 109 ~~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~----~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~ 177 (265)
T COG0489 109 NLPGLTELLAGEALEPVIQHDGIKVLSILPLGP----VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPG 177 (265)
T ss_pred CCCCcccccCCCccccceecCccceEEEEecCC----CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCC
Confidence 00 0112222333333332221 1 112233 45555 56677777776 34599999998866
Q ss_pred cccccccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEE
Q 008567 151 VGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLAC 216 (561)
Q Consensus 151 vgdie~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~ 216 (561)
.||... -.+.++ .+ + +++ ..++++-...=.+.++..++..++..-++|.
T Consensus 178 ~g~~d~----~i~~~~---~~-g-~vi--------Vt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~ 226 (265)
T COG0489 178 TGDADA----TVLQRI---PD-G-VVI--------VTTPGKTALEDVKKAIDMLEKAGIPVLGVVE 226 (265)
T ss_pred chHHHH----HHHhcc---CC-e-EEE--------EeCCccchHHHHHHHHHHHHhcCCceEEEEe
Confidence 677322 222222 11 2 222 2235555555566788889999988888874
No 166
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=93.34 E-value=0.15 Score=49.43 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=36.5
Q ss_pred cCCCeEEEcCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008567 361 RNAECVLVPGGFGDR----GVGGMILAAKYARENNIPYLGICLGMQIS 404 (561)
Q Consensus 361 ~~~DGIilpGG~G~~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL 404 (561)
.++|.|++|||++.. ..+..++.++.+.++++|+.+||-|-.+|
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~l 112 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATV 112 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHH
Confidence 479999999997432 23467899999999999999999999975
No 167
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.96 E-value=0.16 Score=52.61 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHC-C-CeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKAC-G-LRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~-g-~~v~~~K~dpyl 43 (561)
+.|+++|. +|.||..+++.|+..|+.+ | ++|..+.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 46778854 8999999999999999876 5 999999998864
No 168
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.88 E-value=0.41 Score=49.91 Aligned_cols=100 Identities=29% Similarity=0.466 Sum_probs=71.5
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLT 83 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~ 83 (561)
|=|| | +=|.||+.+...|++.|..+|++|..+-+||= |||-=| -. ||+==||......
T Consensus 54 iGIT-G-~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGG---------si---LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGIT-G-VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGG---------SI---LGDRIRMQRLAVD 111 (323)
T ss_pred EEec-C-CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCc---------cc---cccHhhHHhhccC
Confidence 4466 3 35999999999999999999999999999883 675433 33 6888899988876
Q ss_pred CCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCC
Q 008567 84 KNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGG 149 (561)
Q Consensus 84 ~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gG 149 (561)
+.--+.| --...++|- ++.+..+.|.-+- ...+|++|||-=|
T Consensus 112 ~~vFiRs----------~~srG~lGG-------lS~at~~~i~~ld-------AaG~DvIIVETVG 153 (323)
T COG1703 112 PGVFIRS----------SPSRGTLGG-------LSRATREAIKLLD-------AAGYDVIIVETVG 153 (323)
T ss_pred CCeEEee----------cCCCccchh-------hhHHHHHHHHHHH-------hcCCCEEEEEecC
Confidence 6654443 223334443 3566666666664 2689999999444
No 169
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.85 E-value=0.16 Score=48.20 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=38.7
Q ss_pred ccCCCeEEEcCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 360 LRNAECVLVPGGFGDR----GVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 360 l~~~DGIilpGG~G~~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
..++|.|+||||.+.. ..+..++.++.+.++++|+.+||-|-.+|+-+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 4579999999986421 23567888999999999999999999998543
No 170
>PRK05439 pantothenate kinase; Provisional
Probab=92.63 E-value=0.18 Score=52.98 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=35.9
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHC--CCeeeEeecCccccCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKAC--GLRVTSIKIDPYLNTD 46 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~--g~~v~~~K~dpyln~d 46 (561)
.|.|+|| ||.||+.+|..|..+|+.. |.+|..+-+|-|+.-+
T Consensus 88 iIgIaG~--~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 88 IIGIAGS--VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 5788876 5779999999999999874 7899999999998654
No 171
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=92.62 E-value=0.23 Score=50.09 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=34.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||.|.|+|- ||.||..++..|.+.|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 788999954 8999999999999999999999999996
No 172
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=92.60 E-value=0.74 Score=45.53 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=34.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
++++ | -.|.||..+++.++..+.+.|++|-.+-.||--+
T Consensus 2 ~~~~-g-~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFT-G-KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEe-C-CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 4455 4 7899999999999999999999999999988764
No 173
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=92.46 E-value=0.35 Score=41.55 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=32.2
Q ss_pred CccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 9 GVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 9 gv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|--.|.||..+|+.++..|..+|.+|..+-.||.
T Consensus 6 ~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 6 NQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred eCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 6778999999999999999999999999999988
No 174
>PRK06696 uridine kinase; Validated
Probab=92.40 E-value=0.31 Score=48.35 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=36.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTD 46 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d 46 (561)
.|.|+| .||.||+.+|..|...|...|..|..+-.|=|..-+
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 567776 588999999999999999999999998898887643
No 175
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.38 E-value=0.24 Score=51.08 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|+++ | ..|.||..+++.|+..|+..|++|..+-+|+|
T Consensus 73 ~vi~l~-G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFV-G-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEE-C-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 678888 4 89999999999999999999999999999985
No 176
>PRK11249 katE hydroperoxidase II; Provisional
Probab=92.38 E-value=0.51 Score=55.05 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=63.3
Q ss_pred CceEEEEEeccCCCc-ccHHHHHHHHHHcCceeeee-eeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 296 NSVRIAMVGKYVGLA-DSYLSVVKALLHACIACSLK-PSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 296 ~~~~Iavvgky~~~~-DaY~Si~~aL~~ag~~~~v~-v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
++.||||+ -+.+.. ..+..+.++|+.+|+.+.+. ...-.+....= ..+..|. .|.+. ....+|+|+||||..
T Consensus 596 ~gRKIaIL-VaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G--~~I~aD~-t~~~~--~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 596 KGRKVAIL-LNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDG--TVLPIAA-TFAGA--PSLTFDAVIVPGGKA 669 (752)
T ss_pred cccEEEEE-ecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CEEecce-eeccC--CccCCCEEEECCCch
Confidence 45789998 454443 34567899999999865441 00001111100 0000000 01100 012589999999864
Q ss_pred CC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 374 DR----GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 374 ~~----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
.. .....+..|+++.++.+||..||-|.++|+-
T Consensus 670 ~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 670 NIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 32 2346888899999999999999999999964
No 177
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=92.33 E-value=0.25 Score=47.29 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=39.2
Q ss_pred ccCCCeEEEcCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 360 LRNAECVLVPGGFGDR--GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 360 l~~~DGIilpGG~G~~--~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
..++|.|+||||.+.. ..+..++.++.+.+++..+.+||-|-.+|+.
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~ 110 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLAR 110 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHH
Confidence 4578999999987543 3467889999999999999999999999853
No 178
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.27 E-value=0.28 Score=46.56 Aligned_cols=40 Identities=40% Similarity=0.381 Sum_probs=36.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|+.|.|+|- ||.||..++..|...|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 678889954 8999999999999999999999999999663
No 179
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.20 E-value=0.19 Score=47.73 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=38.0
Q ss_pred ccCCCeEEEcCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 360 LRNAECVLVPGGFGDR---GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 360 l~~~DGIilpGG~G~~---~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
...+|+|+||||.+.. ..+..++.++++.++++|+.+||-|--+|+-
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~ 109 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAA 109 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHh
Confidence 4579999999997643 2356788888888899999999999987743
No 180
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.13 E-value=0.25 Score=50.24 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=38.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
||.|.|+ |+=-|+||-.++|.|+..|+..|.+|..+-+||
T Consensus 1 M~~iai~-s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 1 MKVIAIV-SPKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred CcEEEEe-cCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 8999999 999999999999999999999999999999977
No 181
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.08 E-value=2.7 Score=45.64 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|+++|- +|.||..+++.|+..+..+|++|..+-+|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 57888964 6999999999999999999999999999888
No 182
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.89 E-value=0.71 Score=44.23 Aligned_cols=115 Identities=27% Similarity=0.435 Sum_probs=75.8
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCccc-----ccCCcccccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV-----DLDLGNYERF 77 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~-----dldlg~yerf 77 (561)
=|+|||= -|+||..++.=|.-.|+++||+|. |.+-| || .++|.-+ |||=|.=..|
T Consensus 7 ki~ITG~--PGvGKtTl~~ki~e~L~~~g~kvg------------Gf~t~----EV--R~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 7 KIFITGR--PGVGKTTLVLKIAEKLREKGYKVG------------GFITP----EV--REGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred EEEEeCC--CCccHHHHHHHHHHHHHhcCceee------------eEEee----ee--ecCCeEeeeEEEEccCCceEEE
Confidence 4899964 589999999999999999999997 55666 64 4677544 5554444444
Q ss_pred cCCCCCCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEE-ecCCccccccc
Q 008567 78 LDVRLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVI-ELGGTVGDIES 156 (561)
Q Consensus 78 ~~~~l~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~-E~gGtvgdie~ 156 (561)
-.+.. .+-|-|.|. --|+. ..+....+|+++- +.+|++|| ||| +=..-|
T Consensus 67 a~~~~----------------~~~rvGkY~-V~v~~---le~i~~~al~rA~--------~~aDvIIIDEIG--pMElks 116 (179)
T COG1618 67 ARVGF----------------SRPRVGKYG-VNVEG---LEEIAIPALRRAL--------EEADVIIIDEIG--PMELKS 116 (179)
T ss_pred EEcCC----------------CCcccceEE-eeHHH---HHHHhHHHHHHHh--------hcCCEEEEeccc--chhhcc
Confidence 33332 235667773 22222 2334456666654 45799888 555 335557
Q ss_pred cHHHHHHHhhc
Q 008567 157 MPFIEALRQLS 167 (561)
Q Consensus 157 ~~f~ea~~q~~ 167 (561)
--|.+|+++.-
T Consensus 117 ~~f~~~ve~vl 127 (179)
T COG1618 117 KKFREAVEEVL 127 (179)
T ss_pred HHHHHHHHHHh
Confidence 78999998874
No 183
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.87 E-value=0.29 Score=49.41 Aligned_cols=43 Identities=26% Similarity=0.500 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
||-|.|. | =-|+||..+|+-|+..|.++|+||-.+=+||-.|.
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 6788888 6 89999999999999999999999999999998774
No 184
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.84 E-value=0.33 Score=45.73 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=30.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
|.|+|- +|.||..++..|...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456643 79999999999999999999999999985
No 185
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=91.83 E-value=0.21 Score=46.85 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=38.2
Q ss_pred hccCCCeEEEcCCCCC---CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 359 TLRNAECVLVPGGFGD---RGVGGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~---~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
...++|.||||||++. ...+..++.++...+++.++.+||-|..+|+-+
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 3568999999999982 233667788888888899999999999999643
No 186
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=91.73 E-value=1.1 Score=53.15 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+-+||| |+=-++||-++++.|++.|+++|++|..+|-
T Consensus 28 ~~~fI~-GtnT~VGKT~vS~~L~~~~~~~g~~~~y~KP 64 (817)
T PLN02974 28 PAFAVW-GANTAVGKTLVSAGLAAAAASRRSPVLYVKP 64 (817)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHHcCCceEEEEE
Confidence 457999 9999999999999999999999999998885
No 187
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.68 E-value=0.28 Score=50.61 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=40.3
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMS 51 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~ms 51 (561)
|-||| .||.||..++.+|..+|+..|.+|+.+..|.|--.|--.|.
T Consensus 2 IgItG--~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~ 47 (277)
T cd02029 2 IAVTG--SSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMK 47 (277)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHH
Confidence 67897 48999999999999999999999999999998876665543
No 188
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.46 E-value=0.3 Score=49.86 Aligned_cols=43 Identities=23% Similarity=0.480 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
||.|-|+ | =-|+||..+|..|+..|.++|+||-.+=+||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6778788 6 78999999999999999999999999999999874
No 189
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=91.38 E-value=0.41 Score=46.87 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=37.5
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHH-CCCeeeEeecCccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKA-CGLRVTSIKIDPYL 43 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~-~g~~v~~~K~dpyl 43 (561)
+|.|.|+ |.-+|.||+.+|+.|+..|.. .|++|-.+-.||.-
T Consensus 35 ~~vi~v~-s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVT-SSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEE-CCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 4678888 888999999999999999986 69999999999864
No 190
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=91.23 E-value=0.36 Score=45.25 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=33.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|+ +.-+|.||..+|+.|+..|+++|++|-.+-.||-
T Consensus 2 i~v~-~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 2 IVVT-SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred EEEe-eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4455 7789999999999999999999999999988874
No 191
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.11 E-value=0.82 Score=47.93 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
+|.|.|+ |.--|.||..+|+.|+..|..+|++|..+-.||..+
T Consensus 93 ~~vIav~-~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 93 GVVVAVI-GGRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred ceEEEEE-cCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3678888 778899999999999999999999999999999865
No 192
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.99 E-value=0.44 Score=42.79 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.4
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|.++| -+|.||..+++.++..|..+|.+|..+-.||
T Consensus 2 i~~~G--kgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITG--KGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 67785 3899999999999999999999999999999
No 193
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.93 E-value=0.39 Score=44.53 Aligned_cols=36 Identities=33% Similarity=0.282 Sum_probs=30.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+.|.|+|. |+.||..++..|.+.|+++||+|..+|-
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 45889964 8999999999999999999999999887
No 194
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.81 E-value=0.53 Score=45.44 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=32.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+.|-|+| -||-||..++..|.++|+.+|++|..+|.
T Consensus 7 ~ii~ivG--~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 7 PLLAIAA--WSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred eEEEEEC--CCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 4566775 49999999999999999999999999998
No 195
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.74 E-value=4 Score=38.41 Aligned_cols=37 Identities=35% Similarity=0.626 Sum_probs=31.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.++| ..|.||..+++.++..|+..|.+|..+-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45553 46899999999999999999999999999874
No 196
>CHL00175 minD septum-site determining protein; Validated
Probab=90.63 E-value=0.48 Score=48.47 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc-ccCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY-LNTD 46 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy-ln~d 46 (561)
+|.|.|+ +.--|+||..+|+.|+..|..+|++|..+-.||- -|++
T Consensus 15 ~~vi~v~-s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 15 SRIIVIT-SGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLD 60 (281)
T ss_pred ceEEEEE-cCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChh
Confidence 3678888 6778999999999999999999999999999995 4544
No 197
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=90.60 E-value=0.31 Score=54.20 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=33.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|+-|||| |+-||.||-++++.|.+.|+++ |.++|..|
T Consensus 238 ~~~i~Ia-gt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp 274 (476)
T PRK06278 238 PKGIILL-ATGSESGKTFLTTSIAGKLRGK---VFVAKIGP 274 (476)
T ss_pred CCeEEEE-eCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC
Confidence 3558999 9999999999999999999998 99999743
No 198
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=90.29 E-value=0.51 Score=48.32 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=39.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
||-|.++ | =.|+||..+|..|+..|..+|+||-.+=.||-.|.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~ 43 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADC 43 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccc
Confidence 6788888 5 89999999999999999999999999999997665
No 199
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=89.68 E-value=0.56 Score=48.71 Aligned_cols=42 Identities=33% Similarity=0.555 Sum_probs=37.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
|| |.|+| =-|+||..+|..|+..|.++|+||-.+=+||=.|.
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~ 42 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDS 42 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcc
Confidence 67 78885 78999999999999999999999999999997654
No 200
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=89.32 E-value=0.78 Score=42.16 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=34.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|.|+ |..+|.||..+|..+++.|..+|.+|..+-+|++
T Consensus 1 k~i~v~-s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVW-SPKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEE-ESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 678899 9999999999999999999999999998887553
No 201
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=89.23 E-value=0.63 Score=49.39 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=38.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
+|.|.|+ | -.|.||..+++.|+..|..+|++|-.+-.||+-+
T Consensus 31 ~~ii~v~-g-kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 31 TQIIAIY-G-KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CeEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 4678899 5 7999999999999999999999999999999854
No 202
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.18 E-value=0.56 Score=49.17 Aligned_cols=41 Identities=27% Similarity=0.475 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
||+||++|= =|+||..+||+++..+.++|.+|-.+-.||-=
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 799999952 48899999999999999999999999999953
No 203
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.17 E-value=0.68 Score=48.90 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=35.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|+++| .+|.||..+++.|+.+|+.+|.+|..+-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4688885 89999999999999999999999999998874
No 204
>PTZ00301 uridine kinase; Provisional
Probab=89.03 E-value=0.78 Score=45.52 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHC-C-CeeeEeecCccccCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKAC-G-LRVTSIKIDPYLNTD 46 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~-g-~~v~~~K~dpyln~d 46 (561)
+.|-|+|| ||-||..+|.+|...|..+ | ..|..+-.|=|-.-+
T Consensus 4 ~iIgIaG~--SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~ 48 (210)
T PTZ00301 4 TVIGISGA--SGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ 48 (210)
T ss_pred EEEEEECC--CcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc
Confidence 46778876 7889999999999777543 4 346678888876544
No 205
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.87 E-value=0.73 Score=48.78 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=40.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAG 48 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g 48 (561)
+++||+|| =.|+||..+|||++..|.+.|.+|-.+-.||=-|...-
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhh
Confidence 58999995 58999999999999999999999999999997776443
No 206
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=88.75 E-value=0.65 Score=48.60 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=39.1
Q ss_pred HhccCCCeEEEcCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 008567 358 ETLRNAECVLVPGGFGDR--GVGGMILAAKYARENNIPYLGICLGMQISVI 406 (561)
Q Consensus 358 ~~l~~~DGIilpGG~G~~--~~~g~i~~ir~a~e~~iPvLGICLGmQLL~i 406 (561)
+.+.++|.||+|||.+.. .....++.++.+.+++.++.|||-|--+|+.
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 121 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAA 121 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHh
Confidence 345689999999986532 2356788898888899999999999988754
No 207
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.71 E-value=3.4 Score=44.81 Aligned_cols=42 Identities=26% Similarity=0.154 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec-Ccccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI-DPYLN 44 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~-dpyln 44 (561)
|.|.|+ .-=-|+||..+|..|+..|..+|+||-.+-+ ||=-|
T Consensus 107 ~vIav~-n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~n 149 (387)
T PHA02519 107 VVLAVM-SHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGT 149 (387)
T ss_pred eEEEEe-cCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 455555 4445789999999999999999999999996 99544
No 208
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=88.48 E-value=6.3 Score=37.22 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=29.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
|.|+ +---|.||+.+|+.|+..| .+|..+-.||..
T Consensus 2 I~v~-s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 2 IAVI-SGKGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred EEEE-cCCCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 4566 5567999999999999999 899999999863
No 209
>PRK10037 cell division protein; Provisional
Probab=88.21 E-value=0.82 Score=46.10 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
||.|-|. .-=-|+||..+|..|+..|..+|+||-.+-.||
T Consensus 1 ~~~iav~-n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQ-GVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEe-cCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6766666 677899999999999999999999999999999
No 210
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=88.21 E-value=0.85 Score=46.52 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=38.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHH-CCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKA-CGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~-~g~~v~~~K~dpyln~ 45 (561)
+|.|-|+ | =-|+||..+|..|+..|.. +|+||-.+=.||-.|-
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 4788888 7 8999999999999999997 6999999999998763
No 211
>PRK07667 uridine kinase; Provisional
Probab=88.08 E-value=1 Score=43.78 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=35.8
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
.|.|+|+ ||.||+.+|..|...|+..|.+|..+-.|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5678865 788999999999999999999999999999874
No 212
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.07 E-value=0.96 Score=46.10 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=36.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|.|.|| +.-.|.||..+|..|++.|...|.+|-.+-.|+
T Consensus 104 ~vi~vt-s~~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 104 KALAVV-SAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred eEEEEE-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 678999 889999999999999999999999999998875
No 213
>PRK11670 antiporter inner membrane protein; Provisional
Probab=88.07 E-value=0.96 Score=48.74 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=38.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTD 46 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d 46 (561)
|.|.|+ .-=-|+||..+|+.|+..|.+.|+||-.+-+|||-+-=
T Consensus 108 ~vIaV~-S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~ 151 (369)
T PRK11670 108 NIIAVS-SGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred EEEEEe-CCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 567777 55678999999999999999999999999999998743
No 214
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=87.81 E-value=0.95 Score=49.75 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
||.|=|+| - ||-||-.++..|-..|+.+||+|..+|-|
T Consensus 1 MkVi~IvG-~-sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 1 MRVYGIIG-W-KDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred CcEEEEEe-c-CCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 67788884 3 89999999999999999999999999983
No 215
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.79 E-value=2.4 Score=43.25 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=64.7
Q ss_pred HHHHHhhhcCCCCceEEEEEeccCCCcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccC
Q 008567 284 WTKRAETYDNLKNSVRIAMVGKYVGLADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRN 362 (561)
Q Consensus 284 w~~l~~~~~~~~~~~~Iavvgky~~~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~ 362 (561)
|+.+++.. .+...||+++.-=..-.+.| ..+.++|+..|+.....+. +.+. +.. .++ +..+.+.+
T Consensus 17 ~~~~~~la--g~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~---i~~r--~~a---~~~----~~~~~l~~ 82 (250)
T TIGR02069 17 LREFVSRA--GGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILD---VRER--EDA---SDE----NAIALLSN 82 (250)
T ss_pred HHHHHHHh--CCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEe---cCCh--HHc---cCH----HHHHHHhh
Confidence 44454433 22347999994222222222 3577888999985322122 2210 000 011 22356889
Q ss_pred CCeEEEcCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 363 AECVLVPGGFGDR-----GVGGMILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 363 ~DGIilpGG~G~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
+|+|++.||--.+ .-.+...+++.+.+++.|+.|+--|.-+|+
T Consensus 83 ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 83 ATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred CCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 9999999984322 124566788888889999999999998874
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.76 E-value=7.4 Score=42.33 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=33.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHH----CCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKA----CGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~----~g~~v~~~K~dpy 42 (561)
+.|++.|.+ |+||-.+++-|+..|+. .|.+|..+-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 467888665 99999999999998874 5899999999876
No 217
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=87.63 E-value=1.1 Score=45.55 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|-|. | =-|+||..+|+.|+..|..+|+||-.+=.||=
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 777787 6 89999999999999999999999999999984
No 218
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=87.39 E-value=2.9 Score=45.32 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec-Ccccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI-DPYLN 44 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~-dpyln 44 (561)
|.|-|+ .-=-|+||..+|..|+..|..+|+||-.+-+ ||--|
T Consensus 107 ~vIai~-n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~n 149 (388)
T PRK13705 107 PVIGVA-AHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGT 149 (388)
T ss_pred eEEEEE-CCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCc
Confidence 445555 4456789999999999999999999999996 99655
No 219
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.33 E-value=3.4 Score=46.74 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=32.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHC--CCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKAC--GLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~--g~~v~~~K~dpy 42 (561)
+.|.++|. +|.||..+++.|+..+..+ |.+|..+-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 46778864 6999999999999988776 578998888776
No 220
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.01 E-value=1.2 Score=42.72 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=36.8
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTD 46 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d 46 (561)
|.|+| .||-||..+|..|...|+..|.++..+..|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 67886 588899999999999999999999999999888654
No 221
>PRK13236 nitrogenase reductase; Reviewed
Probab=86.20 E-value=1.3 Score=46.16 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
+.|-| +| =-|+||..+|..|+..|.++|+||-.+=+||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 44555 45 77999999999999999999999999999998753
No 222
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=86.13 E-value=1.4 Score=47.37 Aligned_cols=38 Identities=32% Similarity=0.262 Sum_probs=34.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
+|.|-|+| .||.||..+...|.+.|+++||+|..+|-|
T Consensus 205 ~~~~~~~g--~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 205 PPLLGVVG--YSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred ccEEEEec--CCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 36788885 599999999999999999999999999983
No 223
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=85.97 E-value=1.3 Score=45.11 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=38.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
||-|-|. | =-|+||..+|..|+..|..+|+||-.+=+||=.|-
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 6778777 6 88999999999999999999999999999997763
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.95 E-value=1.1 Score=49.11 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHH--HCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLK--ACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~--~~g~~v~~~K~dpy 42 (561)
+.|++.|- +|+||..+++.|+..+. ..|++|..+.+|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 46777744 89999999999998887 67899999999988
No 225
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=85.48 E-value=1.6 Score=41.47 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=31.3
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
.|++|| .||.||..+|.+|-+.|+++|++|..+-.|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578885 799999999999999999999999887765
No 226
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=85.41 E-value=1.6 Score=42.87 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=37.0
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
.|.|+ | =-|+||..+++.|+..|..+|++|-.+-.||-.|.
T Consensus 2 ~iav~-g-KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~ 42 (212)
T cd02117 2 QIAIY-G-KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADS 42 (212)
T ss_pred EEEEE-C-CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 47788 5 88999999999999999999999999999988764
No 227
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=85.35 E-value=1.5 Score=44.77 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=37.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
-|.|. | =-|+||..+|..|+..|..+|++|-.+=.||=.|.
T Consensus 2 ~ia~~-g-KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIY-G-KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEe-C-CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 57788 5 88999999999999999999999999999987764
No 228
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=85.31 E-value=1.3 Score=44.47 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=35.6
Q ss_pred cCCCeEEEcCC-CCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008567 361 RNAECVLVPGG-FGDRG---VGGMILAAKYARENNIPYLGICLGMQIS 404 (561)
Q Consensus 361 ~~~DGIilpGG-~G~~~---~~g~i~~ir~a~e~~iPvLGICLGmQLL 404 (561)
+.+|.|+|||| +|... .+-..+.++...+.+.++.-||-|--++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 68999999999 77643 3566778888888899999999986444
No 229
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=84.87 E-value=1.1 Score=46.18 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=27.5
Q ss_pred CCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 12 SGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 12 S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
-|+||+.+++-|...|..+|+||-.+=+||-
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCC
Confidence 4899999999999999999999999999985
No 230
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=84.52 E-value=1.7 Score=41.24 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=31.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
++|++.| ..|.||+..+..|...|..+|++|..+..
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788885 68899999999999999999999976654
No 231
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=84.31 E-value=0.97 Score=45.81 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
||-|-|. | =.|+||..+|+.|+..|..+| +|-.+=.||=.|
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 6778888 6 899999999999999999999 999999988654
No 232
>PRK15453 phosphoribulokinase; Provisional
Probab=84.26 E-value=1.4 Score=45.79 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=40.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMS 51 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~ms 51 (561)
.|.|||| ||.||..+|.+|..+|+..|.++..+..|=|=-.|-..|.
T Consensus 7 iI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 7 IIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 5788975 8999999999999999999999999999887766666554
No 233
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=84.25 E-value=1.8 Score=42.11 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=28.6
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
.|..|| +||.||+.+|.++-+.|..+|++|-.+
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467784 899999999999999999999977653
No 234
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=84.17 E-value=2 Score=44.71 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=36.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
||.|-|. | =.|+||..+++.|+..|...|+||-.+-.||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4556554 3 67899999999999999999999999999987554
No 235
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=83.73 E-value=11 Score=38.65 Aligned_cols=196 Identities=15% Similarity=0.237 Sum_probs=101.3
Q ss_pred CceEEEEEeccCCCc-ccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc--cCCCeEEEcCCC
Q 008567 296 NSVRIAMVGKYVGLA-DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL--RNAECVLVPGGF 372 (561)
Q Consensus 296 ~~~~Iavvgky~~~~-DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l--~~~DGIilpGG~ 372 (561)
++.+|+|+ ..--.+ .+=..+++.|-.....+ .+.+.++++-.-..... ..-.+|-..++++ .++||+||+|.|
T Consensus 34 RPL~Ilil-NLMP~Ki~TE~Q~lRLL~nsPLQV--~itll~~~sh~~KnTp~-eHl~~FY~tfeeVk~~~FDG~IiTGAP 109 (307)
T COG1897 34 RPLKILIL-NLMPKKIETETQILRLLGNSPLQV--DITLLRIDSHESKNTPA-EHLNSFYCTFEEVKDQKFDGLIITGAP 109 (307)
T ss_pred ccceeeee-ecCchhHHHHHHHHHHhcCCCceE--EEEEEEecCcCCCCCcH-HHHHHHhhcHHHHhhcccCceEEeCCc
Confidence 45789999 552211 11123455554444444 44466666533211000 0001222334554 479999999976
Q ss_pred CCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccccccccCCcCCCCCCCCCceeEecCCCCcccCCc
Q 008567 373 GDR-------GVGGMILAAKYARENNIPYLGICLGMQISVIEFARSVLGLKRANSNEFDSETPNPVVIFMPEGSRTHMGS 445 (561)
Q Consensus 373 G~~-------~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v~gl~da~s~Ef~~~~~~~vi~lm~~~~~~~~G~ 445 (561)
=.. -|+.+.+.+.+...+=.-.|=||-|.|.....+= |++.- + |++.-
T Consensus 110 ve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~y----Gv~K~---~------------l~~Kl------ 164 (307)
T COG1897 110 VELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFY----GVPKY---T------------LPEKL------ 164 (307)
T ss_pred ccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHc----CCCcc---c------------cchhh------
Confidence 331 2567778888888777889999999999755432 22110 1 11100
Q ss_pred ccccCceeEE-EcCCCcccccccCCceeEEeeeeeee-eeCcccccccccCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 008567 446 TMRLGSRRTL-FQTPDCVTSKLYRNAEYVDERHRHRY-EVNPEAIGVLEEAGLKFVGKDETGKRMEILELPSHPFYVGVQ 523 (561)
Q Consensus 446 ~mrlG~~~v~-l~~~~s~l~~iyg~~~~I~~~h~HrY-~vn~~~v~~le~~gl~v~a~~~dg~~vE~ie~~~~p~~~GvQ 523 (561)
.|.++-. +.+.+.++.+. .+...+ -| -|| +++.+.+.. -.++++.+.+.... +-.+..++... +=+-
T Consensus 165 ---~GVy~h~~l~p~~~l~rGf-dd~f~~--Ph-SR~t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~-ifv~ 233 (307)
T COG1897 165 ---SGVYKHDILSPHSLLTRGF-DDSFLA--PH-SRYTDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRN-IFVT 233 (307)
T ss_pred ---hceeeccccCccchhhccC-CccccC--cc-cccccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCe-EEEe
Confidence 1222222 33442223222 112222 22 123 345454544 35788888876544 66666666663 4456
Q ss_pred ccCCCCCC
Q 008567 524 FHPEFKSR 531 (561)
Q Consensus 524 FHPE~~~~ 531 (561)
-|||+...
T Consensus 234 gH~EYD~~ 241 (307)
T COG1897 234 GHPEYDAT 241 (307)
T ss_pred CCcchhhh
Confidence 69998765
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=83.68 E-value=1.8 Score=47.74 Aligned_cols=39 Identities=31% Similarity=0.551 Sum_probs=35.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
..|+++| .-|.||..+++-|++.|+..|++|..+-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4688884 58999999999999999999999999999875
No 237
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=83.05 E-value=2.4 Score=43.12 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.++|. +-=-|+||..+|+.++..|..+|.+|..+-.||=
T Consensus 3 ~i~~i~-~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVL-QGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEe-cCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 455666 6678999999999999999999999999988764
No 238
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=82.80 E-value=2 Score=44.73 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=34.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
|.|.|. | =-|+||..+|+.|+..|..+|+||-.+=+||=.
T Consensus 1 ~vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred CEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 456677 5 689999999999999999999999999998744
No 239
>COG2403 Predicted GTPase [General function prediction only]
Probab=82.67 E-value=1.5 Score=47.00 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=33.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
.|-|| ||--|+||+-+++-+||+|++|||+|+.+..
T Consensus 128 viaV~-atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 128 VIAVT-ATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred eEEEE-EeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 35688 8999999999999999999999999999876
No 240
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.30 E-value=2.3 Score=43.08 Aligned_cols=39 Identities=36% Similarity=0.532 Sum_probs=34.5
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
|.|+ | =.|+||..+|+.|+..|..+|+||-.+-.||=.|
T Consensus 3 i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~ 41 (267)
T cd02032 3 LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD 41 (267)
T ss_pred EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5666 5 8899999999999999999999999999998433
No 241
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.21 E-value=5.1 Score=43.42 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=83.8
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRL 82 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l 82 (561)
.||..| +-|.||-.+++-++..+|.+||+|..+-.|-| -+
T Consensus 103 VimfVG--LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF--------Ra------------------------------ 142 (483)
T KOG0780|consen 103 VIMFVG--LQGSGKTTTCTKLAYYYKKKGYKVALVCADTF--------RA------------------------------ 142 (483)
T ss_pred EEEEEe--ccCCCcceeHHHHHHHHHhcCCceeEEeeccc--------cc------------------------------
Confidence 355553 56889999999999999999999999888432 22
Q ss_pred CCCCcccccchhhHHhhhhhcC-CCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHH
Q 008567 83 TKNNNITTGKIYQSVLEKERKG-DYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIE 161 (561)
Q Consensus 83 ~~~~~~tsGk~y~~vi~~er~g-~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~e 161 (561)
|-.-|-.++-+|.+ -|+|.--.+-| ....++-+++.- ++++|++|+.-.|----=+| ..|
T Consensus 143 --------gAfDQLkqnA~k~~iP~ygsyte~dp--v~ia~egv~~fK-------ke~fdvIIvDTSGRh~qe~s--Lfe 203 (483)
T KOG0780|consen 143 --------GAFDQLKQNATKARVPFYGSYTEADP--VKIASEGVDRFK-------KENFDVIIVDTSGRHKQEAS--LFE 203 (483)
T ss_pred --------chHHHHHHHhHhhCCeeEecccccch--HHHHHHHHHHHH-------hcCCcEEEEeCCCchhhhHH--HHH
Confidence 23333344445443 34454445556 455566677765 48999999999997644333 458
Q ss_pred HHHhhccccCCCCEEEEE
Q 008567 162 ALRQLSFSVGPDNFCLIH 179 (561)
Q Consensus 162 a~~q~~~~~~~~~~~~~~ 179 (561)
-++|....+.+++++||-
T Consensus 204 EM~~v~~ai~Pd~vi~Vm 221 (483)
T KOG0780|consen 204 EMKQVSKAIKPDEIIFVM 221 (483)
T ss_pred HHHHHHhhcCCCeEEEEE
Confidence 899999999999999984
No 242
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=81.81 E-value=1.9 Score=41.64 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.5
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCe----eeEeecCccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLR----VTSIKIDPYL 43 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~----v~~~K~dpyl 43 (561)
.|.|+|+ ||.||+.+|..|..+|...|.. +..+-.|-|.
T Consensus 1 IIgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 3778875 7789999999999999999988 6666665554
No 243
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=81.59 E-value=2.2 Score=42.89 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=34.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
.|.|+||-|- -|+||-.++|+||.-|..+|.||..+-+|
T Consensus 2 ~~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 3789999654 58999999999999999999999998773
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.33 E-value=2.4 Score=49.72 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=38.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|+|| +..+|.||..+|..|+..|...|.||-.+-.||.
T Consensus 532 kvI~vt-S~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 532 NILMIT-GATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred eEEEEe-cCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 789999 9999999999999999999999999999999876
No 245
>PRK11519 tyrosine kinase; Provisional
Probab=81.22 E-value=2.4 Score=49.61 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=38.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|+|| +..+|.||..+|..|+..|...|.+|-.+-+|+.
T Consensus 527 kvi~vt-s~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMT-GVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEE-CCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 789999 8999999999999999999999999999999876
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.14 E-value=2.5 Score=46.45 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHH-HHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVL-KACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll-~~~g~~v~~~K~dpyl 43 (561)
+.|+++| .+|.||+.+++.|+..+ ..+|.+|..+-+|+|=
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 4678885 68999999999999754 7889999999888864
No 247
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=80.65 E-value=6.9 Score=41.11 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=63.3
Q ss_pred cccCCccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcC
Q 008567 192 QKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLN 271 (561)
Q Consensus 192 ~ktkptq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~ 271 (561)
.|----..+++.|.+.| +|++|+|-...- .-..++.+..+. .||+.=|=..- . ..|.++
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~eg---aa~~~a~~~~~~--pvINaGDG~~q-H-----PTQ~LL-------- 144 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEG---AARLLAEFSGVN--PVINAGDGSHQ-H-----PTQALL-------- 144 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCcccc---HHHHHHHhcCCC--ceEECCCCCCC-C-----ccHHHH--------
Confidence 45445567889999888 999999976533 334555555664 48887774333 1 123333
Q ss_pred CCccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeee
Q 008567 272 LLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSL 329 (561)
Q Consensus 272 l~~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v 329 (561)
++....+-.. .-+..+||++||. ...-.-+|.+++|...|+++.+
T Consensus 145 --------Dl~TI~~~~G----~~~gl~iaivGDl-khsRva~S~~~~L~~~ga~v~l 189 (316)
T COG0540 145 --------DLYTIREEFG----RLDGLKIAIVGDL-KHSRVAHSNIQALKRFGAEVYL 189 (316)
T ss_pred --------HHHHHHHHhC----CcCCcEEEEEccc-cchHHHHHHHHHHHHcCCEEEE
Confidence 1111111111 1245899999987 2333347899999999976654
No 248
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.47 E-value=3.3 Score=43.25 Aligned_cols=36 Identities=39% Similarity=0.622 Sum_probs=29.9
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
..+|-+|.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 63 ~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDGT-----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEecCC
Confidence 46899999998775 5677777777799999999986
No 249
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=80.42 E-value=2.7 Score=45.84 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=36.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
||.|.|+ .-=-|+||..+|.-|+..|..+|++|-.+-+||--|
T Consensus 121 ~~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 121 LQVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred ceEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 3556666 556789999999999999999999999999999644
No 250
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=79.67 E-value=3.1 Score=44.88 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|.|+ .-=-|+||..+|..|+..|..+|++|-.+-+||-
T Consensus 105 ~vI~v~-n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ 144 (387)
T TIGR03453 105 QVIAVT-NFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred eEEEEE-ccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 566676 6677999999999999999999999999999994
No 251
>PRK03846 adenylylsulfate kinase; Provisional
Probab=79.47 E-value=3 Score=40.51 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=31.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.|.++|. ||.||+.++..|..+|..+|+.+..+-.|++
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 46788854 7999999999999999988987777666554
No 252
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=78.51 E-value=4.5 Score=37.03 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.0
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.++ +.-+|.||..++..++..|..+|.+|..+-.||+
T Consensus 2 i~~~-~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVT-SGKGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5677 4489999999999999999999999999999873
No 253
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=78.51 E-value=8.1 Score=40.09 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=77.6
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRL 82 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l 82 (561)
.|.|+-|- =|+||+.+++-|+..|.++|++|-.+-+|=|.-==|-.|+. +||+-+-.+.+-+ ++..
T Consensus 49 iI~VlSGK-GGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~--e~~~~~~~~~g~~-----------Pv~~ 114 (300)
T KOG3022|consen 49 IILVLSGK-GGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGL--EGEVVHQSDNGWI-----------PVVV 114 (300)
T ss_pred EEEEEeCC-CCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCC--CCceeeecCCCce-----------eeee
Confidence 45555332 37899999999999999999999999999887666677777 5666444444333 3322
Q ss_pred CCCCcccc-cchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcccc
Q 008567 83 TKNNNITT-GKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGD 153 (561)
Q Consensus 83 ~~~~~~ts-Gk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgd 153 (561)
++.-..-| |=.-.. | .+ .-+.-=|-.+..|++.++.+. +.+.|++||..==-.+|
T Consensus 115 ~~~l~~mS~gfLl~~-----~-~~---~vIwRGpkk~~~I~qflk~vd-------wg~lDyLviDtPPGtsD 170 (300)
T KOG3022|consen 115 NKNLKLMSMGFLLKP-----R-DD---SVIWRGPKKNSMIKQFLKDVD-------WGELDYLVIDTPPGTSD 170 (300)
T ss_pred cCCeEEEEeeeecCC-----C-Cc---cceeechHHHHHHHHHHhcCC-------CCCcCEEEEeCCCCCCh
Confidence 22211111 221111 0 00 123444677889999998886 68999999985433355
No 254
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.12 E-value=3.9 Score=41.11 Aligned_cols=41 Identities=34% Similarity=0.495 Sum_probs=34.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHH-HCCCeeeEeecCcc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLK-ACGLRVTSIKIDPY 42 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~-~~g~~v~~~K~dpy 42 (561)
||.|.|+ ..==|+||..+|.-||..|. .+|+||-.+=+||=
T Consensus 2 ~~iI~v~-n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 2 MKIIAVA-NQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred CEEEEEE-ecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4556666 77778999999999999999 77799999999874
No 255
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=77.72 E-value=2.7 Score=42.56 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=28.1
Q ss_pred EEEeCCccCCCchHHHHHH-HHHHHHHCCCeeeEeecCc
Q 008567 4 VLVTGGVVSGLGKGVTASS-VGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s-~~~ll~~~g~~v~~~K~dp 41 (561)
|-|||= -|.||..+||. +-++++..||+|-.+-.||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 456642 37899999999 6666666669999999998
No 256
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=77.14 E-value=3.6 Score=42.13 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=29.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|+|.|.-==|+||+.+|.-|+..|...|++|..+-+|.|
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 555555566899999999999999999999999888775
No 257
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=77.14 E-value=8.1 Score=38.39 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred CceEEEEEeccCC-CcccH-HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCC
Q 008567 296 NSVRIAMVGKYVG-LADSY-LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFG 373 (561)
Q Consensus 296 ~~~~Iavvgky~~-~~DaY-~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G 373 (561)
...+|+++ .+.. ..+.| ..+.++++..|+..... ..+.. .+.. .++ +..+.+.++|+|++.||--
T Consensus 28 ~~~~i~~i-ptA~~~~~~~~~~~~~~~~~lG~~~v~~---~~~~~--~~~a---~~~----~~~~~l~~ad~I~~~GG~~ 94 (217)
T cd03145 28 AGARIVVI-PAASEEPAEVGEEYRDVFERLGAREVEV---LVIDS--REAA---NDP----EVVARLRDADGIFFTGGDQ 94 (217)
T ss_pred CCCcEEEE-eCCCcChhHHHHHHHHHHHHcCCceeEE---eccCC--hHHc---CCH----HHHHHHHhCCEEEEeCCcH
Confidence 45799999 5532 22233 34777888888753221 11221 1100 011 2235688999999999842
Q ss_pred CC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 008567 374 DR-----GVGGMILAAKYARENNIPYLGICLGMQISV 405 (561)
Q Consensus 374 ~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ 405 (561)
.. .-.++..+++.+.+++.|+.|+--|.-+++
T Consensus 95 ~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 95 LRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 21 113567788888889999999999998874
No 258
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=76.99 E-value=3.5 Score=39.79 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=31.6
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
|.|+|+ ||.||+.++..|..+| .|.+|..+-.|.|..
T Consensus 2 igi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 678877 8999999999999999 567888888888763
No 259
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=76.93 E-value=4.1 Score=41.25 Aligned_cols=39 Identities=36% Similarity=0.538 Sum_probs=33.4
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
|.|. | =-|+||..+|..|+..|.++|+||-.+=.||=.|
T Consensus 3 i~~~-g-KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~ 41 (268)
T TIGR01281 3 LAVY-G-KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41 (268)
T ss_pred EEEE-c-CCcCcHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 3444 5 7799999999999999999999999999998543
No 260
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=76.54 E-value=2.9 Score=42.96 Aligned_cols=100 Identities=27% Similarity=0.401 Sum_probs=58.7
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLT 83 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~ 83 (561)
|=||| .=|+||+.+...|++.|.++|.+|..+-+||= ||+-.|-. ||.=-||......
T Consensus 32 iGiTG--~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~~~~~d 89 (266)
T PF03308_consen 32 IGITG--PPGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQELSRD 89 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCHHHHTS
T ss_pred EEeeC--CCCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhcCcCCC
Confidence 44663 35899999999999999999999999999884 67555543 6777788765544
Q ss_pred CCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCC
Q 008567 84 KNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGG 149 (561)
Q Consensus 84 ~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gG 149 (561)
+.--+.| --...-||- +.....+.+.-+.. ..+|++|||-=|
T Consensus 90 ~~vfIRS----------~atRG~lGG-------ls~~t~~~v~ll~a-------aG~D~IiiETVG 131 (266)
T PF03308_consen 90 PGVFIRS----------MATRGSLGG-------LSRATRDAVRLLDA-------AGFDVIIIETVG 131 (266)
T ss_dssp TTEEEEE----------E---SSHHH-------HHHHHHHHHHHHHH-------TT-SEEEEEEES
T ss_pred CCEEEee----------cCcCCCCCC-------ccHhHHHHHHHHHH-------cCCCEEEEeCCC
Confidence 4433333 111122222 24455555555532 579999999544
No 261
>PRK00889 adenylylsulfate kinase; Provisional
Probab=76.28 E-value=5.2 Score=37.76 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
+.|.++| .+|.||..++..|...|+..|.+|..+-.|
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3566663 689999999999999999999888777554
No 262
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=75.99 E-value=7.1 Score=37.30 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=40.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc-ccCCCCCCCCccccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY-LNTDAGTMSPFEHGE 57 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy-ln~d~g~msp~~hge 57 (561)
||.+=|+| .|+-||-.+...|-+.|+.+||+|+.+|-++= +.+|..-=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 46666774 58889999999999999999999999999542 244444334444433
No 263
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=75.93 E-value=5.8 Score=34.61 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=34.6
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHC-CCeeeEeecCccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKAC-GLRVTSIKIDPYL 43 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~-g~~v~~~K~dpyl 43 (561)
|.|+ |-=.|.||..++..|+..|.+. |++|..+-.||.-
T Consensus 2 i~~~-~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 2 IAFI-GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred EEEE-CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 5566 6778999999999999999998 9999999998873
No 264
>PLN02929 NADH kinase
Probab=75.85 E-value=4 Score=42.89 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHH
Q 008567 309 LADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYAR 388 (561)
Q Consensus 309 ~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~ 388 (561)
+++....+.+.|+..|+++.. +...++ .+.+.++|.||.-||-|+ ++.+++.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~------v~r~~~---------------~~~~~~~Dlvi~lGGDGT-----~L~aa~~~- 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWEC------VLRNEL---------------SQPIRDVDLVVAVGGDGT-----LLQASHFL- 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEE------eecccc---------------ccccCCCCEEEEECCcHH-----HHHHHHHc-
Confidence 334446678889999987633 111111 034567899999998775 56677777
Q ss_pred HcCCCEEEEehhH
Q 008567 389 ENNIPYLGICLGM 401 (561)
Q Consensus 389 e~~iPvLGICLGm 401 (561)
..++|+|||=.|.
T Consensus 85 ~~~iPvlGIN~Gp 97 (301)
T PLN02929 85 DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCcEEEEECCC
Confidence 7789999999983
No 265
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=75.49 E-value=3 Score=43.04 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+|+++|| |..||||+. +++.|.++|++|..+=-
T Consensus 6 ~~~~lIT-GASsGIG~~-----~A~~lA~~g~~liLvaR 38 (265)
T COG0300 6 GKTALIT-GASSGIGAE-----LAKQLARRGYNLILVAR 38 (265)
T ss_pred CcEEEEE-CCCchHHHH-----HHHHHHHCCCEEEEEeC
Confidence 4799999 999999975 78999999999988644
No 266
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=75.39 E-value=5.2 Score=45.98 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=33.9
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
||.|=|+| .||-||-.+..-|...|+++||+|..+|-|.
T Consensus 10 ~~vi~ivG--~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCA--YSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEc--CCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 46666774 3999999999999999999999999999855
No 267
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=74.91 E-value=3.4 Score=38.58 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC---c--hhHHHHHHHHHH
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR---G--VGGMILAAKYAR 388 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~---~--~~g~i~~ir~a~ 388 (561)
..+.++++..|+++.. ++-.+.+ ..+..+.+.++|+|++.||--.. . -.++.++|+++.
T Consensus 3 ~~~~~~f~~~g~~v~~------l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~ 66 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQ------LDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAY 66 (154)
T ss_dssp HHHHHHHHHCT-EEEE------CCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEE------EeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHH
Confidence 3567889999987533 3322211 11234667899999999973221 1 246788999998
Q ss_pred HcCCCEEEEehhHHH
Q 008567 389 ENNIPYLGICLGMQI 403 (561)
Q Consensus 389 e~~iPvLGICLGmQL 403 (561)
.++.|+.|+-.|.-+
T Consensus 67 ~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 67 RKGGVIIGTSAGAMI 81 (154)
T ss_dssp HTTSEEEEETHHHHC
T ss_pred HCCCEEEEEChHHhh
Confidence 899999999999854
No 268
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.48 E-value=6.3 Score=41.52 Aligned_cols=36 Identities=44% Similarity=0.698 Sum_probs=29.8
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.++|.+|.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 71 ~~~D~vi~lGGDGT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 71 DGCELVLVLGGDGT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred cCCCEEEEEcCCHH-----HHHHHHHhccCCCcEEEEecCC
Confidence 46899999998775 5677777777899999999885
No 269
>PRK07933 thymidylate kinase; Validated
Probab=74.42 E-value=5.8 Score=39.23 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=32.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+||.+-| +.|.||+..+..|...|+++|++|...+.
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4788885 47889999999999999999999999887
No 270
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.06 E-value=6.4 Score=41.23 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=51.6
Q ss_pred eEEEEEeccCC--CcccHHHHHHHHHHcCceeeeeeeeEeecCC-CcccccccCCCcchhhHHHhc-cCCCeEEEcCCCC
Q 008567 298 VRIAMVGKYVG--LADSYLSVVKALLHACIACSLKPSIDWIAAS-DLEDESAKLTPKDHAAAWETL-RNAECVLVPGGFG 373 (561)
Q Consensus 298 ~~Iavvgky~~--~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~-~l~~~~~~~d~~~~~~~~~~l-~~~DGIilpGG~G 373 (561)
.+|+|+.+... ..+....+.++|...|+.+.+.-. ....+ .+.... ......+. ..+ ..+|.+|.-||-|
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~--~~~~~~~~~~~~---~~~~~~~~-~~~~~~~D~vi~lGGDG 79 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEV--GIKEGCIYTQDT---VGCHIVNK-TELGQYCDLVAVLGGDG 79 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecc--cccccchhcccc---ccccccch-hhcCcCCCEEEEECCcH
Confidence 36999976632 112223567778888887654200 00000 000000 00000000 223 3689999999877
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 374 DRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 374 ~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
+ ++.+++.+...++|+|||=+|.
T Consensus 80 T-----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 T-----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred H-----HHHHHHHhcccCCCEEEEecCC
Confidence 5 5677777767799999999996
No 271
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.03 E-value=4.8 Score=47.31 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=37.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|.|.|| +...|.||..+|..|+..|...|.+|-.+-.||.
T Consensus 547 kvi~vt-s~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 547 EVVETQ-RPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred eEEEee-cCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 678899 8999999999999999999999999999999876
No 272
>PRK05480 uridine/cytidine kinase; Provisional
Probab=73.85 E-value=6.1 Score=38.46 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=30.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
..|.|+| .||.||+.++..|...| .+.+|..+-.|.|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 3678886 68999999999999998 45577777787764
No 273
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=73.64 E-value=17 Score=35.51 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=32.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMS 51 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~ms 51 (561)
-|.++| ..|.||-.+...+.+.+. .+.+|..++-|++-++|+-.+.
T Consensus 24 ~i~~~G--~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~ 69 (207)
T TIGR00073 24 VLNFMS--SPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLR 69 (207)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHH
Confidence 345553 478899877666665554 4689999999887777765444
No 274
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=73.51 E-value=7.6 Score=40.53 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=51.2
Q ss_pred eEEEEEeccCCC--cccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGL--ADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~--~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
.+|+++.+...- ......+.++|+..|+.+.+.. ..+..+..... + .+ ...+....+|.+|.-||-|.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~----~~~~~~~~~~~---~-~~-~~~~~~~~~d~vi~~GGDGt- 75 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEA----DTARNIGLTGY---P-AL-TPEEIGARADLAVVLGGDGT- 75 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCcccc---c-cc-ChhHhccCCCEEEEECCcHH-
Confidence 369999766331 1223567778888887754420 00100000000 0 00 00122246899999998664
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 376 GVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 376 ~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
++.+++.....++|+|||=+|.
T Consensus 76 ----~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ----MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHHhcCCCCCEEEEcCCC
Confidence 5667776666789999999887
No 275
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.44 E-value=6.8 Score=38.36 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=32.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
|+|++.| .+|+||-.+++=|+..++.+|.+|..+-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 6777775 479999999999999999999999999886663
No 276
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=73.21 E-value=3.2 Score=42.07 Aligned_cols=100 Identities=26% Similarity=0.395 Sum_probs=65.6
Q ss_pred CCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCCCCCccccc
Q 008567 12 SGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTKNNNITTG 91 (561)
Q Consensus 12 S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~~~~~~tsG 91 (561)
-|+||+.+++-+...|...|.+|-.+=+||=- |- .-++.-|
T Consensus 10 GGIGKSTts~N~aAAla~~GkkVl~vGCDPKa-------------------DS--------------------Tr~Llgg 50 (278)
T COG1348 10 GGIGKSTTSQNLAAALAELGKKVLIVGCDPKA-------------------DS--------------------TRLLLGG 50 (278)
T ss_pred CCcCcchhHHHHHHHHHHcCCeEEEEcCCCCc-------------------ch--------------------HHHHhCC
Confidence 38999999999999999999999999998831 11 1122335
Q ss_pred chhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcc--------ccccccHHHHHH
Q 008567 92 KIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTV--------GDIESMPFIEAL 163 (561)
Q Consensus 92 k~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtv--------gdie~~~f~ea~ 163 (561)
+.-.+||.--|+-.. +--+|+ -|-|. +.-.-|--+|-||-- |=|+++-+||-+
T Consensus 51 ~~ipTVld~lre~~~-~e~~~l----edvi~--------------~Gf~Gv~CVEsGGPepGvGCAGRGVitai~~Le~l 111 (278)
T COG1348 51 KAIPTVLDTLREKGE-VEDLEL----EDVIF--------------TGFGGVKCVESGGPEPGVGCAGRGVITAINLLEEL 111 (278)
T ss_pred cccchHHHHHHhcCc-cccCCH----HHhee--------------ccCCceEEeecCCCCCCCCcccchHHHHHHHHHHh
Confidence 666667766655332 112332 11111 122356667888865 778888888888
Q ss_pred Hhhccc
Q 008567 164 RQLSFS 169 (561)
Q Consensus 164 ~q~~~~ 169 (561)
..+..+
T Consensus 112 gaf~~~ 117 (278)
T COG1348 112 GAFEED 117 (278)
T ss_pred CCcccc
Confidence 777655
No 277
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=72.46 E-value=10 Score=37.95 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=36.8
Q ss_pred eeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCc---hhHHH-HHHHHHHHcCCCEEEEehhH
Q 008567 332 SIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRG---VGGMI-LAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 332 ~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~---~~g~i-~~ir~a~e~~iPvLGICLGm 401 (561)
.+.+++...|..+ .|+ +.-..+|+|||-.-+- +.+++ ..|....+++--+||||.|-
T Consensus 32 ~v~~V~~~~Li~E-----------pW~--~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 32 AVDRVDAQFLIKE-----------PWE--ETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred eEEEeeeheeecC-----------cch--hceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc
Confidence 3556776665432 243 4557789999865542 33433 44566667889999999984
No 278
>PLN02727 NAD kinase
Probab=72.19 E-value=7.5 Score=46.37 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=53.6
Q ss_pred ceEEEEEeccCC-CcccHHHHHHHHHHc-CceeeeeeeeEeecCCCcccc-cccCCCcchhhHHHhc-cCCCeEEEcCCC
Q 008567 297 SVRIAMVGKYVG-LADSYLSVVKALLHA-CIACSLKPSIDWIAASDLEDE-SAKLTPKDHAAAWETL-RNAECVLVPGGF 372 (561)
Q Consensus 297 ~~~Iavvgky~~-~~DaY~Si~~aL~~a-g~~~~v~v~i~~i~~~~l~~~-~~~~d~~~~~~~~~~l-~~~DGIilpGG~ 372 (561)
..+|+||+|... ..+....+.++|... |+.+.+.-+ ..+.+... ........|....+.+ .++|.||+-||-
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~----~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGD 753 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPD----VHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGD 753 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecc----hHHHhhccccccccceecccchhhcccCCCEEEEECCc
Confidence 468999988743 112223477888876 766543211 01111000 0000000000001222 468999999987
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 373 GDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 373 G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
|+ ++.+++.+...++|+|||=+|.
T Consensus 754 GT-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 754 GV-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred HH-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 75 5677777777789999999985
No 279
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=72.09 E-value=7.1 Score=40.45 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=29.5
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCe--eeEeecCc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLR--VTSIKIDP 41 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~--v~~~K~dp 41 (561)
.|.+.|.| ++||+.+|.-+..+|+..+-+ |..+-.|.
T Consensus 84 IIgiaGsv--avGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 84 IIGIAGSV--AVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred EEEeccCc--cccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 36777766 689999999999999999988 66655554
No 280
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=71.84 E-value=5.8 Score=43.06 Aligned_cols=48 Identities=29% Similarity=0.266 Sum_probs=38.9
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc--CCCCCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN--TDAGTMSP 52 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln--~d~g~msp 52 (561)
-|||.|+|= .||+.+++-|+..|-++|++|..+-.||=-| .-||+||.
T Consensus 75 ~vmvvG~vD--SGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL 124 (398)
T COG1341 75 VVMVVGPVD--SGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISL 124 (398)
T ss_pred EEEEECCcC--cCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEe
Confidence 379999975 5899999999999999999999987776333 45666665
No 281
>PRK08727 hypothetical protein; Validated
Probab=71.21 E-value=3 Score=41.73 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=40.4
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~d 63 (561)
.|+++|+ ||.||.-++.++|.-+.+.|++|.-+-.+-+...=+..+.-++.=.+.|.||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5889977 8999999999999999999998877655332221112222233335677775
No 282
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=70.45 E-value=6.7 Score=42.15 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=35.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||.||+. -+=++.||..++.+|.+.|+.+|.+|..+|-
T Consensus 2 ~~~l~l~-p~~~~~G~tsi~lgLl~~l~~k~~kva~~kP 39 (354)
T COG0857 2 SRTLLLI-PTETGVGKTSISLGLLRALEQKGLKVAYFKP 39 (354)
T ss_pred cceEEEe-ccCCCccHHHHHHHHHHHHHHcCceeEEEec
Confidence 5788887 8999999999999999999999999999985
No 283
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=69.72 E-value=13 Score=37.19 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=59.5
Q ss_pred ceEEEEEeccCCCccc---HH-HHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCC
Q 008567 297 SVRIAMVGKYVGLADS---YL-SVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGF 372 (561)
Q Consensus 297 ~~~Iavvgky~~~~Da---Y~-Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~ 372 (561)
..+|+.| -+.+..-+ |. -..++|+..|+.+.- +.-..+. ..+....|.+.|.|.+.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~~-------------~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKPP-------------LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeee---eeccCCC-------------HHHHHHhhhhccEEEECCch
Confidence 5799999 56433322 32 377888999987632 2222221 01123456779999999973
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 008567 373 GDR-----GVGGMILAAKYARENNIPYLGICLGMQIS 404 (561)
Q Consensus 373 G~~-----~~~g~i~~ir~a~e~~iPvLGICLGmQLL 404 (561)
--- ...+..+.|+...++++|+.|+-.|.-+.
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 211 12578889999999999999999886554
No 284
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.67 E-value=10 Score=39.89 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=29.4
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.++|-+|.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 67 ~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCCC
Confidence 46899999998774 5677777777899999998874
No 285
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.27 E-value=7.5 Score=37.42 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=29.0
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
-++++|. +|.||.-+|++||+-+..+|++|.-+..
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 4778864 7999999999999999999999988877
No 286
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=68.06 E-value=9.9 Score=36.29 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=29.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
++|+|.|. .|.||+..+..|...|...|++|..
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 78999964 6889999999999999999999864
No 287
>PRK06761 hypothetical protein; Provisional
Probab=67.87 E-value=7.1 Score=40.63 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=29.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
+.|+|+|- +|.||..++..|...|..+|++|..+
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 67899953 89999999999999999999988774
No 288
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.87 E-value=12 Score=42.73 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCceEEEEEeccCC--CcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCC
Q 008567 295 KNSVRIAMVGKYVG--LADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGF 372 (561)
Q Consensus 295 ~~~~~Iavvgky~~--~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~ 372 (561)
.+..||+|+.+... ..+....+.++|+..++.+.+.- .....+..... ... .....+.++|.+|.-||-
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~----~~~~~~~~~~~-~~~----~~~~~~~~~dlvi~lGGD 358 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELES----FLYNKLKNRLN-EEC----NLIDDIEEISHIISIGGD 358 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEec----hhhhhhccccc-ccc----cccccccCCCEEEEECCc
Confidence 34568999976532 11122356777887887654420 00111100000 000 000123468999999987
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 373 GDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 373 G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
|+ ++.+++.+...++|+|||=+|.
T Consensus 359 GT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 359 GT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 75 5677777766789999999886
No 289
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.81 E-value=11 Score=39.33 Aligned_cols=85 Identities=22% Similarity=0.171 Sum_probs=50.8
Q ss_pred eEEEEEeccCCCcccH---HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCC
Q 008567 298 VRIAMVGKYVGLADSY---LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGD 374 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY---~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~ 374 (561)
.+|+|+.+... ++. ..+.++|+..|+++.+.- ..+..+.... +. ..+...++|-+|.-||-|+
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~~----~~~~~~~~~~-------~~-~~~~~~~~Dlvi~iGGDGT 76 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLEK----ESAEILDLPG-------YG-LDELFKISDFLISLGGDGT 76 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEec----chhhhhcccc-------cc-hhhcccCCCEEEEECCCHH
Confidence 46999976532 222 346667777787764421 0111110000 00 0022246899999998664
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 375 RGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 375 ~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 -----LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -----HHHHHHHhcCCCCcEEEEeCCC
Confidence 5677777777799999999987
No 290
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.70 E-value=11 Score=39.47 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=50.7
Q ss_pred eEEEEEeccCCCc--ccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC
Q 008567 298 VRIAMVGKYVGLA--DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR 375 (561)
Q Consensus 298 ~~Iavvgky~~~~--DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~ 375 (561)
.+|+|+.+...-. .....+.++|+..|+++.+.- ..+..+...... ..+..+...++|.+|.-||-|+
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~d~vi~lGGDGT- 75 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQ----QIAHELQLKNVK-----TGTLAEIGQQADLAIVVGGDGN- 75 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccccc-----ccchhhcCCCCCEEEEECCcHH-
Confidence 3699997653211 112346777888887764420 001011000000 0000122346899999998775
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 376 GVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 376 ~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
++.+++.+...++|+|||=+|.
T Consensus 76 ----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 ----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ----HHHHHHHhcCCCCeEEEEECCC
Confidence 5567776666789999999987
No 291
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=67.53 E-value=9 Score=38.14 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=31.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHH--CCCeeeEeecCccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKA--CGLRVTSIKIDPYL 43 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~--~g~~v~~~K~dpyl 43 (561)
|-|+|+ ||.||..+|..|..+|+. .+.+|..+-.|-|.
T Consensus 2 igI~G~--sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGS--VAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCC--CCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 556765 788999999999999986 66788888888773
No 292
>PRK05642 DNA replication initiation factor; Validated
Probab=67.24 E-value=4.1 Score=40.84 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=41.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG 64 (561)
.+++.|. ||.||.-.+.++|..+.++|.+|.-+..+=+.+-.+..+..++...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4677865 79999999999999999999999876664333322233334455556666653
No 293
>PRK01184 hypothetical protein; Provisional
Probab=67.14 E-value=6.7 Score=37.23 Aligned_cols=30 Identities=33% Similarity=0.394 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|+.|++||+.-| ||+.++ ++++..|+.+..
T Consensus 1 ~~~i~l~G~~Gs--GKsT~a----~~~~~~g~~~i~ 30 (184)
T PRK01184 1 MKIIGVVGMPGS--GKGEFS----KIAREMGIPVVV 30 (184)
T ss_pred CcEEEEECCCCC--CHHHHH----HHHHHcCCcEEE
Confidence 688999988655 599854 368888876643
No 294
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=67.11 E-value=6.5 Score=40.37 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=38.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNT 45 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~ 45 (561)
|||||-| =-|+||-..++||+.-|..-+-+|-.|-.||--|+
T Consensus 20 KwifVGG--KGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 20 KWIFVGG--KGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred eEEEEcC--cCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 8999964 35899999999999999999999999999998776
No 295
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=65.30 E-value=5.4 Score=40.61 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=24.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++|| |-.||+|+. +++.|...|++|-.
T Consensus 7 kv~lIT-GASSGiG~A-----~A~~l~~~G~~vvl 35 (246)
T COG4221 7 KVALIT-GASSGIGEA-----TARALAEAGAKVVL 35 (246)
T ss_pred cEEEEe-cCcchHHHH-----HHHHHHHCCCeEEE
Confidence 678999 889999864 68899999998876
No 296
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=65.04 E-value=3.1 Score=40.64 Aligned_cols=110 Identities=14% Similarity=0.305 Sum_probs=58.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHC-CCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCc--ccccc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKAC-GLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLG--NYERF 77 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~-g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg--~yerf 77 (561)
++.|.||||..| ||+.++..+ +++ |+.| +|+..+.- |++ ..|.++ + -.++|
T Consensus 1 ~~~i~itG~~gs--GKst~~~~l----~~~~g~~~----------i~~D~~~~----~~~--~~~~~~----~~~l~~~f 54 (195)
T PRK14730 1 QRRIGLTGGIAS--GKSTVGNYL----AQQKGIPI----------LDADIYAR----EAL--APGSPI----LKAILQRY 54 (195)
T ss_pred CcEEEEECCCCC--CHHHHHHHH----HHhhCCeE----------eeCcHHHH----HHH--hcCchH----HHHHHHHh
Confidence 467999998654 798666554 444 7765 35555543 322 223333 1 12356
Q ss_pred cCCCCCCCC-cccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEec
Q 008567 78 LDVRLTKNN-NITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIEL 147 (561)
Q Consensus 78 ~~~~l~~~~-~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~ 147 (561)
-+.-+.++. .+.-.++-.-|.+....-..| .-.+=|+|..++.+++.... ...++++|+
T Consensus 55 g~~i~~~~g~~idr~~L~~~vf~d~~~~~~l--~~i~hP~i~~~~~~~~~~~~---------~~~~vv~e~ 114 (195)
T PRK14730 55 GNKIIDPDGSELNRKALGEIIFNDPEERRWL--ENLIHPYVRERFEEELAQLK---------SNPIVVLVI 114 (195)
T ss_pred CHHhcCCCCCeeCHHHHHHHHhCCHHHHHHH--HHHHhHHHHHHHHHHHHhcC---------CCCEEEEEe
Confidence 555555554 333322222222223332333 12345888888888876643 224788876
No 297
>PRK06851 hypothetical protein; Provisional
Probab=65.02 E-value=12 Score=40.56 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++++|| +|.||+.+...|+..|..+|++|.-+.+
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 56889987 7999999999999999999999987754
No 298
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=64.75 E-value=10 Score=32.98 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+|+| .||.||+.+|..|+..| |+.+
T Consensus 2 I~I~G--~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 2 IIISG--PPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEE--STTSSHHHHHHHHHHHH---TCEE
T ss_pred EEEEC--CCCCCHHHHHHHHHHHH---CCeE
Confidence 67774 58999999888888766 6554
No 299
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.33 E-value=13 Score=38.39 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCCCchhHHHHHHHHHHH--cCCCEEEEehhH
Q 008567 362 NAECVLVPGGFGDRGVGGMILAAKYARE--NNIPYLGICLGM 401 (561)
Q Consensus 362 ~~DGIilpGG~G~~~~~g~i~~ir~a~e--~~iPvLGICLGm 401 (561)
++|.+|.-||-|+ .+.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5699999998775 5677777665 589999999986
No 300
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=64.33 E-value=14 Score=37.49 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=32.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
|+.|-+. -.==|.||..++-.|+..|.++|-+|+.|-.||=
T Consensus 1 M~vItf~-s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn 41 (231)
T PF07015_consen 1 MPVITFA-SSKGGAGKTTAAMALASELAARGARVALIDADPN 41 (231)
T ss_pred CCeEEEe-cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3444444 2334789999999999999999999999999874
No 301
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.15 E-value=46 Score=36.79 Aligned_cols=118 Identities=24% Similarity=0.404 Sum_probs=87.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRL 82 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l 82 (561)
.||..| +=|-||-.+|+=|++.|+.+|++|-..-+|-| -| +-||-
T Consensus 102 vImmvG--LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~--------Rp-------------------AA~eQ------ 146 (451)
T COG0541 102 VILMVG--LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY--------RP-------------------AAIEQ------ 146 (451)
T ss_pred EEEEEe--ccCCChHhHHHHHHHHHHHcCCceEEEecccC--------Ch-------------------HHHHH------
Confidence 355553 56889999999999999999999999999766 34 33331
Q ss_pred CCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHHH
Q 008567 83 TKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEA 162 (561)
Q Consensus 83 ~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ea 162 (561)
...+...-.-+|+|...+.-| .+..++.+.+.- ...+|++||--+|-..= .....+-
T Consensus 147 ------------L~~La~q~~v~~f~~~~~~~P--v~Iak~al~~ak-------~~~~DvvIvDTAGRl~i--de~Lm~E 203 (451)
T COG0541 147 ------------LKQLAEQVGVPFFGSGTEKDP--VEIAKAALEKAK-------EEGYDVVIVDTAGRLHI--DEELMDE 203 (451)
T ss_pred ------------HHHHHHHcCCceecCCCCCCH--HHHHHHHHHHHH-------HcCCCEEEEeCCCcccc--cHHHHHH
Confidence 113333445567777556666 777899998886 36789999999997742 3567788
Q ss_pred HHhhccccCCCCEEEE
Q 008567 163 LRQLSFSVGPDNFCLI 178 (561)
Q Consensus 163 ~~q~~~~~~~~~~~~~ 178 (561)
+++++..+.+..++||
T Consensus 204 l~~Ik~~~~P~E~llV 219 (451)
T COG0541 204 LKEIKEVINPDETLLV 219 (451)
T ss_pred HHHHHhhcCCCeEEEE
Confidence 8899988888877776
No 302
>PRK13973 thymidylate kinase; Provisional
Probab=63.42 E-value=15 Score=36.21 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=32.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+||.+-| +.|.||+..+..|...|.++|++|.....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~~ 39 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTRE 39 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 7999986 47899999999999999999999977765
No 303
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.06 E-value=9 Score=35.30 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=29.2
Q ss_pred HhccCCCeEEEcCCCCCCchhHHHHHHHHHHH--cCCCEEEEeh
Q 008567 358 ETLRNAECVLVPGGFGDRGVGGMILAAKYARE--NNIPYLGICL 399 (561)
Q Consensus 358 ~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e--~~iPvLGICL 399 (561)
+.+.++|.|++-||-.-|..-...+-+++..+ .+.|+.|+|+
T Consensus 81 e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 44667999999999777654333444444443 4679999995
No 304
>PLN02796 D-glycerate 3-kinase
Probab=62.57 E-value=10 Score=40.60 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
.|-|+|+ ||-||..++..|..+|+..|+++..+-+|-
T Consensus 102 iIGI~G~--sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 102 VIGISAP--QGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 3667765 899999999999999999898888887754
No 305
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.57 E-value=8.5 Score=39.06 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||||.- ||+|+. +++.|.+.|++|...
T Consensus 8 k~~lVTGas~~~GIG~a-----iA~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWG-----IAKQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHH-----HHHHHHhCCCEEEEe
Confidence 7899998876 699976 667788899998763
No 306
>PRK06179 short chain dehydrogenase; Provisional
Probab=62.52 E-value=8.3 Score=38.56 Aligned_cols=34 Identities=38% Similarity=0.593 Sum_probs=26.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|.|+|||| .||+|+ ++++.|.++|++|...--||
T Consensus 5 ~~vlVtGa-sg~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGA-SSGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecC-CCHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 67999966 478875 56677888999998776643
No 307
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=62.51 E-value=32 Score=33.97 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=21.2
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGI 397 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGI 397 (561)
.++||||+.+.. . ......++.+.+.++|+..+
T Consensus 59 ~~vdgiIi~~~~--~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPAS--P--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCCC--h--hhhHHHHHHHHHCCCeEEEE
Confidence 489999997631 1 11123456666788998875
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=62.51 E-value=15 Score=33.02 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=29.3
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
++|+|. +|.||..++..++..+...|.+|..+-.+
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 577865 89999999999999999988888766553
No 309
>PRK00698 tmk thymidylate kinase; Validated
Probab=62.43 E-value=14 Score=35.31 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=29.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
++|+|.| .+|.||+..+..|...|...|+.|...+
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 7899996 4788999999999999999887766543
No 310
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=62.07 E-value=11 Score=35.00 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=29.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|+++| .||-||+.+|..|+..|...|+++..+-.|+
T Consensus 2 i~i~G--~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTG--LSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 56664 5899999999999999999998877655444
No 311
>PRK06217 hypothetical protein; Validated
Probab=61.79 E-value=8.4 Score=36.80 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+-|+|+| .||-||+.+|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 56699996 68999999999999876
No 312
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=60.94 E-value=13 Score=35.37 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
.|.+|| +||-||+.+|-+|-++|-+||.-.-.
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~Y~ 64 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLTYI 64 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceEEE
Confidence 478885 79999999999999999999965444
No 313
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=60.39 E-value=20 Score=35.67 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=33.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
.+||.+-| +-|.||...+.+|...|+.+|++|...+-
T Consensus 3 g~fI~iEG--iDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 3 GMFIVIEG--IDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred ceEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 37899996 47899999999999999999999998887
No 314
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=60.35 E-value=11 Score=35.37 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=20.7
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
+++|+|.|+ +|.||+.++..|+.-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468899976 9999999998888754
No 315
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=59.86 E-value=12 Score=36.38 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYL 43 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyl 43 (561)
..|.|+| .||.||+.++.+|..+|.. .++..+-.|.|+
T Consensus 7 ~vi~I~G--~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~ 44 (207)
T TIGR00235 7 IIIGIGG--GSGSGKTTVARKIYEQLGK--LEIVIISQDNYY 44 (207)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHhcc--cCCeEecccccc
Confidence 4577886 6899999999999999875 455566666664
No 316
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.28 E-value=19 Score=37.29 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=49.3
Q ss_pred eEEEEEeccCCC--cccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHh-ccCCCeEEEcCCCCC
Q 008567 298 VRIAMVGKYVGL--ADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWET-LRNAECVLVPGGFGD 374 (561)
Q Consensus 298 ~~Iavvgky~~~--~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~-l~~~DGIilpGG~G~ 374 (561)
+||+++.+.+.- ......+.++|+..++++.+.- ..+....... .+. .... ..++|.||.-||-|+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~----~~~~~~~~~~------~~~-~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDS----ETYEHLPEFS------EED-VLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccc------ccc-cccccccCCCEEEEEeCcHH
Confidence 478998665321 1122357778888888765420 0010000000 000 0011 136899999998665
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 375 RGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 375 ~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
++.+++ ....++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 456666 556689999999987
No 317
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.27 E-value=21 Score=36.45 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=44.3
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
+++++++ -......+..+.+.|...|..+. |..... ....++|.+|.-||-|+
T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFY-REEKEKEAKFLKEKISKEHEVVE------FCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEe-CccHHHHHHHHHHHHHHcCCeeE------eecccc-----------------cccCCCCEEEEECCcHH---
Confidence 3567773 22333444567777777776542 222111 12247799999998765
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhH
Q 008567 378 GGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.+.+++.+ ++|+|||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 34555544 89999999886
No 318
>PRK14528 adenylate kinase; Provisional
Probab=59.27 E-value=13 Score=35.78 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
||-|+|+|+ +|.||+.+|..|+..+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 688999977 9999999988887654
No 319
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=58.63 E-value=32 Score=34.86 Aligned_cols=50 Identities=28% Similarity=0.526 Sum_probs=30.3
Q ss_pred cCCCeEEEcCCCCCCc-h-hHHHHHHHHHHHcCCCEEEE--ehhHHHHHHHhcccccc
Q 008567 361 RNAECVLVPGGFGDRG-V-GGMILAAKYARENNIPYLGI--CLGMQISVIEFARSVLG 414 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~-~-~g~i~~ir~a~e~~iPvLGI--CLGmQLL~ie~g~~v~g 414 (561)
++.|-|..+-|||--. + ...+-+-.-..-.++|+.|+ |.|| +|+||.+.|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 4568899998887632 2 11111111122368999997 8887 666877644
No 320
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.61 E-value=56 Score=27.96 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=46.3
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCC-CcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCch
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAAS-DLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGV 377 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~-~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~ 377 (561)
+|+|||.- .+-...+.+.++..|++... ...+ ..+... ......+.++|.||++=++-+-
T Consensus 1 ~vliVGG~---~~~~~~~~~~~~~~G~~~~~------hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH-- 61 (97)
T PF10087_consen 1 SVLIVGGR---EDRERRYKRILEKYGGKLIH------HGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSH-- 61 (97)
T ss_pred CEEEEcCC---cccHHHHHHHHHHcCCEEEE------EecCCCCccch--------hHHHHhcCCCCEEEEEeCCcCh--
Confidence 47888742 23336778888889987533 3111 100000 0133678899999988765432
Q ss_pred hHHHHHHHHHHHcCCCEEEE
Q 008567 378 GGMILAAKYARENNIPYLGI 397 (561)
Q Consensus 378 ~g~i~~ir~a~e~~iPvLGI 397 (561)
.....+-+.|.+.++|+.=.
T Consensus 62 ~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 62 NAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 22334445667789998643
No 321
>PRK06924 short chain dehydrogenase; Provisional
Probab=58.36 E-value=12 Score=36.86 Aligned_cols=31 Identities=42% Similarity=0.701 Sum_probs=24.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
||.++||| ..+|+|+. |++.|.++|++|..+
T Consensus 1 ~k~vlItG-asggiG~~-----ia~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITG-TSQGLGEA-----IANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEec-CCchHHHH-----HHHHHHhcCCEEEEE
Confidence 78999995 55788865 566677889998775
No 322
>PRK07831 short chain dehydrogenase; Provisional
Probab=57.95 E-value=12 Score=37.15 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++||||.-||+|+. +++.|.++|++|...
T Consensus 18 k~vlItG~sg~gIG~~-----ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSA-----TARRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHH-----HHHHHHHcCCEEEEE
Confidence 6789998887799854 567788899998763
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.89 E-value=20 Score=37.10 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=81.0
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRL 82 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l 82 (561)
.|++.|. +|.||..++..|+..|..+|.+|..+-+|||- . |.++++-
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-----------------------i----~~~~ql~---- 123 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-----------------------I----GTVQQLQ---- 123 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-----------------------H----HHHHHHH----
Confidence 5677755 89999999999999999999999888776542 1 1122110
Q ss_pred CCCCcccccchhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcc-ccccccHHHH
Q 008567 83 TKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTV-GDIESMPFIE 161 (561)
Q Consensus 83 ~~~~~~tsGk~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtv-gdie~~~f~e 161 (561)
+ .++-+|-.+.... =.+++.+.++.+++ ..++|+|||...|.. .| ..-++
T Consensus 124 ------------------~-~~~~~~~~~~~~~-~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~~---~~~l~ 174 (270)
T PRK06731 124 ------------------D-YVKTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNYRA---SETVE 174 (270)
T ss_pred ------------------H-HhhhcCceEEecC-CHHHHHHHHHHHHh------cCCCCEEEEECCCCCcCC---HHHHH
Confidence 0 1111232322221 24567777877752 246899999999997 34 24456
Q ss_pred HHHhhccccCCCCEEEEEEeeeeEeCCCCccccCCccchHHHHHhCCCcccEEEE
Q 008567 162 ALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLAC 216 (561)
Q Consensus 162 a~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkptq~sv~~l~s~Gi~pd~iI~ 216 (561)
.++++.....+. .+|+. |.++ .|..=.+.-++.+.+ +.+|.+|+
T Consensus 175 el~~~~~~~~~~---~~~LV----l~a~--~~~~d~~~~~~~f~~--~~~~~~I~ 218 (270)
T PRK06731 175 EMIETMGQVEPD---YICLT----LSAS--MKSKDMIEIITNFKD--IHIDGIVF 218 (270)
T ss_pred HHHHHHhhhCCC---eEEEE----EcCc--cCHHHHHHHHHHhCC--CCCCEEEE
Confidence 666655444433 23332 3321 111112334455544 66788875
No 324
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=57.77 E-value=23 Score=34.85 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=31.1
Q ss_pred HhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 358 ETLRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 358 ~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
+.|+++|.||+....++.-.....++++..++++.+++||.-+.
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 46899999999987764333556778888888999999998443
No 325
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=57.57 E-value=15 Score=36.94 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=27.3
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|+++| .+|.||+.+|..|++.|...|++|..+
T Consensus 2 Ivl~G--~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTG--LPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 67775 578899999999999999988887665
No 326
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=57.48 E-value=17 Score=37.17 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=30.6
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
-+++.|+ +|+||.-+|++||.-|..+|++|.-+..
T Consensus 107 nl~l~G~--~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 107 NLVLLGP--PGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4677765 6999999999999999999999998765
No 327
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.02 E-value=12 Score=37.48 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=25.0
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||||.. +|+|+. +++.|.++|++|...
T Consensus 8 k~~lItGa~~s~GIG~a-----ia~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWG-----IARSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHH-----HHHHHHHCCCEEEEe
Confidence 6799998885 899965 677788899998653
No 328
>PRK05541 adenylylsulfate kinase; Provisional
Probab=57.00 E-value=18 Score=34.01 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=26.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
++|+++| .||.||+.++..|...|...|..+..
T Consensus 8 ~~I~i~G--~~GsGKst~a~~l~~~l~~~~~~~~~ 40 (176)
T PRK05541 8 YVIWITG--LAGSGKTTIAKALYERLKLKYSNVIY 40 (176)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4678885 58889999999999999887766543
No 329
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=56.64 E-value=14 Score=39.60 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=33.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHH-HCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLK-ACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~-~~g~~v~~~K~dpyln 44 (561)
++++| ++|.||+.++..|...|. .+|++|..+-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 45564 689999999999998887 6999999999987763
No 330
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=56.61 E-value=22 Score=28.37 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=24.7
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|+++|+ +|.||+.++..|...| .|.++..+.-
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 678865 6778999999999988 6677776643
No 331
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.14 E-value=13 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++||||.. +|+|+. +++.|.++|++|...
T Consensus 8 k~~lItGas~~~gIG~a-----~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 8 KKIVVMGVANKRSIAWG-----CAQAIKDQGATVIYT 39 (252)
T ss_pred CEEEEeCCCCCCchHHH-----HHHHHHHCCCEEEEe
Confidence 7799998876 899976 567777899998753
No 332
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.90 E-value=18 Score=34.58 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=37.4
Q ss_pred cCCCeEEEcCCCCCCc--------------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc
Q 008567 361 RNAECVLVPGGFGDRG--------------VGGMILAAKYARENNIPYLGICLGMQISVIEFA 409 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~--------------~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g 409 (561)
..+|++|+|||||... ......+++...+.++|+==||.-=-++..-||
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g 146 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC
Confidence 4679999999998731 134566677777889999999988877766655
No 333
>PRK08118 topology modulation protein; Reviewed
Probab=55.17 E-value=13 Score=35.22 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+=|+|+| .+|.||+.+|..|+..|
T Consensus 1 m~rI~I~G--~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 1 MKKIILIG--SGGSGKSTLARQLGEKL 25 (167)
T ss_pred CcEEEEEC--CCCCCHHHHHHHHHHHh
Confidence 56689996 68999999999999865
No 334
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.00 E-value=21 Score=37.34 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=49.3
Q ss_pred EEEEEeccCC--CcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhc-cCCCeEEEcCCCCCC
Q 008567 299 RIAMVGKYVG--LADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETL-RNAECVLVPGGFGDR 375 (561)
Q Consensus 299 ~Iavvgky~~--~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l-~~~DGIilpGG~G~~ 375 (561)
+|+|+.+... ..+....+.+.|+..++++.+. ....+.+...... +.+ ...+ +.+|-||.-||-|+
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~~-----~~~-~~~~~~~~d~vi~~GGDGt- 74 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGLQ-----TVS-RKLLGEVCDLVIVVGGDGS- 74 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCccccc-----ccc-hhhcccCCCEEEEEeCcHH-
Confidence 6999865432 2223345777787778776442 1111111100000 000 0122 36899999998664
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 376 GVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 376 ~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.+.+++.+...++|+|||=.|.
T Consensus 75 ----~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 75 ----LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ----HHHHHHHhcCCCCCEEEEeCCc
Confidence 4566666666789999999986
No 335
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=54.89 E-value=15 Score=36.90 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=24.6
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++||||. .||||+. +++.|.++|++|..
T Consensus 7 k~~lItGas~~~GIG~a-----ia~~la~~G~~v~~ 37 (258)
T PRK07370 7 KKALVTGIANNRSIAWG-----IAQQLHAAGAELGI 37 (258)
T ss_pred cEEEEeCCCCCCchHHH-----HHHHHHHCCCEEEE
Confidence 789999886 5899975 66778889999865
No 336
>PRK08233 hypothetical protein; Provisional
Probab=54.87 E-value=12 Score=35.00 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLK 28 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~ 28 (561)
+.|+|+|+ ||.||+.+|..|+..|.
T Consensus 4 ~iI~I~G~--~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAV--SGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECC--CCCCHHHHHHHHHhhCC
Confidence 56888864 49999999999998764
No 337
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=54.52 E-value=11 Score=38.91 Aligned_cols=28 Identities=43% Similarity=0.656 Sum_probs=20.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+.|.||| +||.||+++..+ |...||-+
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~----lEDlGyyc 28 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRV----LEDLGYYC 28 (286)
T ss_pred CcEEEEec--CCCCcHHHHHHH----HHhcCeee
Confidence 57899995 899999987755 45555543
No 338
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=54.35 E-value=23 Score=38.01 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc-cccCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP-YLNTD 46 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp-yln~d 46 (561)
|-|+| .||-||..++..|...|+.+ ++|..+|-++ ...+|
T Consensus 8 i~i~G--~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~~~~~d 48 (369)
T PRK14490 8 IAFCG--YSGSGKTTLITALVRRLSER-FSVGYYKHGCHRFDID 48 (369)
T ss_pred EEEEe--CCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCCCCCCC
Confidence 44563 39999999999999999999 9999999753 33444
No 339
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=54.23 E-value=12 Score=39.10 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+.|+||| +||.||+.+. +.|...||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 78999996 8999998554 5677777765
No 340
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=54.14 E-value=13 Score=37.67 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=64.8
Q ss_pred cCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCCCCCcccc
Q 008567 11 VSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTKNNNITT 90 (561)
Q Consensus 11 ~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~~~~~~ts 90 (561)
..|-||...++++..+|...|.+|..+ |.||++-+. --+.|.|+=.|
T Consensus 4 paGSGKTT~~~~~~~~~~~~~~~~~~v------NLDPa~~~~-----------~y~~~iDird~---------------- 50 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNGRDVYIV------NLDPAVENL-----------PYPPDIDIRDL---------------- 50 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT-S-EEEE------E--TT-S-------------SS--SEEGGGT----------------
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEE------EcchHhccc-----------ccCchHHHHhh----------------
Confidence 368899999999999999999998875 556677653 01223332211
Q ss_pred cchhhHHhhhhhcC---------CCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHH
Q 008567 91 GKIYQSVLEKERKG---------DYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIE 161 (561)
Q Consensus 91 Gk~y~~vi~~er~g---------~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~e 161 (561)
--+.+|+++..-| +|+-.. .|++++.|++.. .+.+|+ +|+|=||=..+-+
T Consensus 51 -i~~~evm~~~~LGPNGal~~~me~l~~~-------~d~l~~~i~~~~----------~~y~l~---DtPGQiElf~~~~ 109 (238)
T PF03029_consen 51 -ISVEEVMEEYGLGPNGALIYCMEYLEEN-------IDWLDEEIEKYE----------DDYLLF---DTPGQIELFTHSD 109 (238)
T ss_dssp ---HHHHHTT-T--HHHHHHHHHHHHGGG-------HHHHHHHHHHHH-----------SEEEE---E--SSHHHHHHSH
T ss_pred -hhhhhhhhhcCcCCcHHHHHHHHHHHHH-------HHHHHHHHhhcC----------CcEEEE---eCCCCEEEEEech
Confidence 1123334332222 333222 266667666653 288888 7999999999999
Q ss_pred HHHhhccccCC-CCEEEEEE
Q 008567 162 ALRQLSFSVGP-DNFCLIHV 180 (561)
Q Consensus 162 a~~q~~~~~~~-~~~~~~~~ 180 (561)
.++.+...+.+ .+.+-+|+
T Consensus 110 ~~~~i~~~L~~~~~~~~v~L 129 (238)
T PF03029_consen 110 SGRKIVERLQKNGRLVVVFL 129 (238)
T ss_dssp HHHHHHHTSSS----EEEEE
T ss_pred hHHHHHHHHhhhcceEEEEE
Confidence 99988877764 33444444
No 341
>PRK08177 short chain dehydrogenase; Provisional
Probab=53.89 E-value=17 Score=35.35 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||-++|||| .+|+|+ ++++.|.++|++|..+-.
T Consensus 1 ~k~vlItG~-sg~iG~-----~la~~l~~~G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGA-SRGLGL-----GLVDRLLERGWQVTATVR 33 (225)
T ss_pred CCEEEEeCC-CchHHH-----HHHHHHHhCCCEEEEEeC
Confidence 688999966 567775 467788889999987654
No 342
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=53.52 E-value=24 Score=36.94 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=31.6
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHC--CCeeeEeecCcccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKAC--GLRVTSIKIDPYLN 44 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~--g~~v~~~K~dpyln 44 (561)
.|-|.|+ ||.||+.+|..|..+|+.. +-+|..+-.|.|..
T Consensus 64 IIGIaG~--~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 64 IISIAGS--VAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4567776 6789999999999999854 34788888888774
No 343
>PRK08939 primosomal protein DnaI; Reviewed
Probab=53.32 E-value=21 Score=37.56 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|-+++.|. +|.||.-++++||.-|..+|++|..+..
T Consensus 157 ~gl~L~G~--~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 157 KGLYLYGD--FGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CeEEEECC--CCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 35788875 5999999999999999999999987766
No 344
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.81 E-value=15 Score=36.83 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=23.4
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++||||.- +|+|+ ++++.|..+|++|..
T Consensus 9 k~~lITGas~~~GIG~-----a~a~~la~~G~~v~~ 39 (260)
T PRK06603 9 KKGLITGIANNMSISW-----AIAQLAKKHGAELWF 39 (260)
T ss_pred cEEEEECCCCCcchHH-----HHHHHHHHcCCEEEE
Confidence 6899997764 47776 467888899999865
No 345
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=52.76 E-value=14 Score=38.17 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=27.7
Q ss_pred ccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 360 LRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 360 l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
..++|.||+-||-|+ .+.+++.+...++|+|||=.|.
T Consensus 74 ~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 478999999998554 4556666655689999999874
No 346
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.59 E-value=16 Score=37.19 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=25.1
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||||.. +|+|+ ++++.|.+.|++|...
T Consensus 6 k~~lItGas~~~GIG~-----aiA~~la~~G~~Vil~ 37 (274)
T PRK08415 6 KKGLIVGVANNKSIAY-----GIAKACFEQGAELAFT 37 (274)
T ss_pred cEEEEECCCCCCCHHH-----HHHHHHHHCCCEEEEE
Confidence 7899998874 79985 5778888899998753
No 347
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=52.47 E-value=26 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.++|.||.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 46899999998775 5667777666789999999774
No 348
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.94 E-value=16 Score=36.76 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.2
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++||||. .+|||+. +++.|.++|++|..
T Consensus 7 k~~lITGa~~~~GIG~a-----~a~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYG-----IAKACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHH-----HHHHHHHCCCEEEE
Confidence 679999984 6799976 66778889999864
No 349
>PRK06851 hypothetical protein; Provisional
Probab=51.76 E-value=25 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=32.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++++|+ .|.||..+...++..+..+|++|..+-+
T Consensus 215 ~~~~i~G~--pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 215 NRYFLKGR--PGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred eEEEEeCC--CCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 67899987 5899999999999999999999987765
No 350
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=51.52 E-value=13 Score=38.06 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.4
Q ss_pred ccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 360 LRNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 360 l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
+.++|.+|.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 456899999998775 5677777777789999999885
No 351
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=51.28 E-value=28 Score=33.03 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=28.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+.|.++| .||.||+.++..|...|...|+.+..+-.
T Consensus 19 ~~i~i~G--~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 19 VVIWLTG--LSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 4677885 36999999999999999998886654433
No 352
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=50.44 E-value=23 Score=39.14 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=32.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+|-|.|+ ||-||..++..|..+|+..|++|..+-+|-|
T Consensus 214 IIGIsG~--qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 214 VIGFSAP--QGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 4567765 7889999999999999999999999998874
No 353
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.27 E-value=20 Score=34.53 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=25.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
|.|+||||. +++| .++++.|.++|++|..+-.+
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRG 40 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCC
Confidence 679999655 7777 56778888899998776553
No 354
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=49.90 E-value=26 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=33.0
Q ss_pred EEEEEeCCccC---CCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVS---GLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S---~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|+|+|| .... |=||..++..|+..|...|.+|..+
T Consensus 56 k~IlVT-S~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 56 KLILVT-AINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred eEEEEe-cCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 899999 7777 9999999999999999999999887
No 355
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.89 E-value=19 Score=35.64 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=25.6
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.|+||||.- ||+|+. +++.|..+|++|...
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~ 37 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFT 37 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEE
Confidence 6799998884 799965 778888899998875
No 356
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.79 E-value=20 Score=35.62 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=25.5
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||||.- +|||+ .+++.|.++|.+|...
T Consensus 7 k~vlVtGas~~~giG~-----~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGA-----AICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHH-----HHHHHHHHCCCeEEEE
Confidence 7899998884 89995 5778888999998764
No 357
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=49.73 E-value=34 Score=33.11 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=26.0
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+|.|-+| +|-||..+|.+++.-...+|++|.++.+
T Consensus 7 li~v~~g--~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTG--NGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECC--CCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4555556 7888888888888888889999966543
No 358
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=49.66 E-value=16 Score=35.63 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=29.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+.|+++| -+|.||..+|.++++-+...|.++..+.+
T Consensus 39 ~~lll~G--~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 39 RFLYLWG--ESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CeEEEEC--CCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 3588996 46999999999999999888887766555
No 359
>PRK06101 short chain dehydrogenase; Provisional
Probab=49.43 E-value=17 Score=35.71 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=24.4
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
||-++|||| .+|+|+. +++.|.++|++|...
T Consensus 1 ~~~vlItGa-s~giG~~-----la~~L~~~G~~V~~~ 31 (240)
T PRK06101 1 MTAVLITGA-TSGIGKQ-----LALDYAKQGWQVIAC 31 (240)
T ss_pred CcEEEEEcC-CcHHHHH-----HHHHHHhCCCEEEEE
Confidence 578999966 5888855 667778899998875
No 360
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.33 E-value=15 Score=37.81 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.2
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.++|.++.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 45799999998765 5677777777899999999885
No 361
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=49.17 E-value=17 Score=35.69 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=23.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
+|.|+|| |..||+||. +++.|..+|.+|...
T Consensus 5 ~~~ilIT-Gas~GiG~a-----ia~~l~~~G~~v~~~ 35 (251)
T COG1028 5 GKVALVT-GASSGIGRA-----IARALAREGARVVVA 35 (251)
T ss_pred CCEEEEe-CCCCHHHHH-----HHHHHHHCCCeEEEE
Confidence 4789999 667799987 455566889986653
No 362
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=48.80 E-value=21 Score=35.79 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=35.3
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGMQISVIEFARSV 412 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGmQLL~ie~g~~v 412 (561)
.++||++|+= |++|++ .++|+. ..+|+.|||----+.+...|+++
T Consensus 68 ~GvdaiiIaC-f~DPgl----~~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGL----AAARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHH----HHHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 4799999987 888664 344443 37999999999888888888875
No 363
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=48.34 E-value=38 Score=35.11 Aligned_cols=35 Identities=40% Similarity=0.655 Sum_probs=28.7
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLG 400 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLG 400 (561)
+.+|.+++-||-|. ++.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 56888888888664 567777777778999999999
No 364
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.27 E-value=21 Score=35.76 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.5
Q ss_pred EEEEEeCCcc-CCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVV-SGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~-S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++||||.. +|+|+. +++.|.++|++|...
T Consensus 11 k~~lItGas~g~GIG~a-----~a~~la~~G~~v~l~ 42 (258)
T PRK07533 11 KRGLVVGIANEQSIAWG-----CARAFRALGAELAVT 42 (258)
T ss_pred CEEEEECCCCCCcHHHH-----HHHHHHHcCCEEEEE
Confidence 6789998876 699965 667778899988764
No 365
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.22 E-value=18 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=25.5
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|-++|||+- .||+|+. +++.|.++|++|..
T Consensus 9 k~alITGa~~~~GIG~a-----~A~~la~~Ga~Vvv 39 (299)
T PRK06300 9 KIAFIAGIGDDQGYGWG-----IAKALAEAGATILV 39 (299)
T ss_pred CEEEEeCCCCCCCHHHH-----HHHHHHHCCCEEEE
Confidence 678999776 5999976 67899999999976
No 366
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=47.97 E-value=31 Score=29.15 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCC
Q 008567 299 RIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGG 371 (561)
Q Consensus 299 ~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG 371 (561)
||||=.. | .++.++|+..|+++.- +.. +..+.++|+++++|-
T Consensus 3 kIAVE~~---L----s~v~~~L~~~GyeVv~------l~~------------------~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 3 KIAVEEG---L----SNVKEALREKGYEVVD------LEN------------------EQDLQNVDAIVVTGQ 44 (80)
T ss_pred eEEecCC---c----hHHHHHHHHCCCEEEe------cCC------------------ccccCCcCEEEEECC
Confidence 6776632 3 7899999999998732 111 134789999999994
No 367
>PF13479 AAA_24: AAA domain
Probab=47.65 E-value=17 Score=35.71 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHHHHHh
Q 008567 118 TDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQ 165 (561)
Q Consensus 118 ~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ea~~q 165 (561)
++++.+.+..+.. ....+|.+||. |+.+++.+-+.++++|
T Consensus 52 ~~~~~~~~~~l~~-----~~~~y~tiVID---sis~~~~~~~~~~~~~ 91 (213)
T PF13479_consen 52 WEDFLEALDELEE-----DEADYDTIVID---SISWLEDMCLEYICRQ 91 (213)
T ss_pred HHHHHHHHHHHHh-----ccCCCCEEEEE---CHHHHHHHHHHHHhhh
Confidence 5555555555432 13566777776 5556666666666655
No 368
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.22 E-value=24 Score=39.30 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
+.|-|| |+ -||+.+++-|..+|++.|+++..
T Consensus 122 ~~I~VT-GT---nGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAIT-GT---NGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEE-CC---CcHHHHHHHHHHHHHHcCCCEEE
Confidence 468888 43 79999999999999999999886
No 369
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=46.98 E-value=23 Score=35.22 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=23.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
+++|||| .||||+.++- .+.+.+++.|++|...
T Consensus 2 ~vlItGa-s~GIG~~~a~-~la~~~~~~g~~V~~~ 34 (256)
T TIGR01500 2 VCLVTGA-SRGFGRTIAQ-ELAKCLKSPGSVLVLS 34 (256)
T ss_pred EEEEecC-CCchHHHHHH-HHHHhhccCCcEEEEE
Confidence 6899965 5999987543 3444455689998764
No 370
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.79 E-value=43 Score=34.56 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.9
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHc-CCCEEEEeh-h
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYAREN-NIPYLGICL-G 400 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~-~iPvLGICL-G 400 (561)
.++|.+|.-||-|+ ++.+++.+... ++|+|||=+ |
T Consensus 38 ~~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 38 KNANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CCccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 34699999998765 45666665443 789999999 6
No 371
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=46.78 E-value=35 Score=33.84 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=30.9
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE-eecCccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS-IKIDPYL 43 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~-~K~dpyl 43 (561)
.|.|+| .||.||..++..|..+|+..+-.+.. +-+|.|.
T Consensus 35 iigi~G--~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 35 IVGIAG--PPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 456664 48999999999999999998887776 6666643
No 372
>PRK06893 DNA replication initiation factor; Validated
Probab=46.59 E-value=14 Score=36.82 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~d 63 (561)
.+++.|. ||.||.-++.++|.-+..+|.+|.-+..+-.-...+..+..++.-.+.+.||
T Consensus 41 ~l~l~G~--~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDD 99 (229)
T PRK06893 41 FFYIWGG--KSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDD 99 (229)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeC
Confidence 4567764 7999999999999999999998876655321111112233455556777776
No 373
>PRK04040 adenylate kinase; Provisional
Probab=46.48 E-value=29 Score=33.62 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=23.9
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
+|.|+||| .+|.||+.++..|...|. .|+++
T Consensus 2 ~~~i~v~G--~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTG--VPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEe--CCCCCHHHHHHHHHHHhc-cCCeE
Confidence 58899996 578999999998888774 24443
No 374
>PRK06196 oxidoreductase; Provisional
Probab=46.45 E-value=20 Score=37.05 Aligned_cols=30 Identities=40% Similarity=0.499 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.|+||||. +|+|+- +++.|.++|++|...
T Consensus 27 k~vlITGas-ggIG~~-----~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 27 KTAIVTGGY-SGLGLE-----TTRALAQAGAHVIVP 56 (315)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999664 888864 566777899998774
No 375
>PRK06953 short chain dehydrogenase; Provisional
Probab=46.37 E-value=27 Score=33.87 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=24.8
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||.++|||| .+++|.. +++.|.++|++|..+-.
T Consensus 1 ~~~vlvtG~-sg~iG~~-----la~~L~~~G~~v~~~~r 33 (222)
T PRK06953 1 MKTVLIVGA-SRGIGRE-----FVRQYRADGWRVIATAR 33 (222)
T ss_pred CceEEEEcC-CCchhHH-----HHHHHHhCCCEEEEEEC
Confidence 688999966 5888865 55566678999988643
No 376
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.31 E-value=38 Score=37.25 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=38.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCC-CCCCcc-ccceEEcCCCcccccCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAG-TMSPFE-HGEVFVLDDGGEVDLDL 71 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g-~msp~~-hgev~V~~dG~E~dldl 71 (561)
|.|-||| +-||..|++-|+.+|+..|+++..-. |+-.. ++...+ -.+++|.+=+ |-+||+
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~ 176 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDL 176 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccc
Confidence 4677774 57999999999999999999875421 22111 111112 2478888766 334544
No 377
>PRK05693 short chain dehydrogenase; Provisional
Probab=46.13 E-value=21 Score=35.76 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=24.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
||-++|||| .||+|+. +++.|.++|++|...-
T Consensus 1 mk~vlItGa-sggiG~~-----la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRA-----LADAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHH-----HHHHHHHCCCEEEEEe
Confidence 688999955 6888875 4566678899987643
No 378
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=45.63 E-value=21 Score=35.55 Aligned_cols=30 Identities=30% Similarity=0.635 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .||+|+. +++.|.++|++|...
T Consensus 9 k~~lItGa-s~gIG~a-----ia~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQG-----MAIGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEe
Confidence 78999955 6888865 567778899998753
No 379
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=45.41 E-value=1.1e+02 Score=32.53 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
+-|+|+|++ |-||..+..+|+..+
T Consensus 149 ~~ilI~G~t--GSGKTTll~aL~~~~ 172 (319)
T PRK13894 149 RNILVIGGT--GSGKTTLVNAIINEM 172 (319)
T ss_pred CeEEEECCC--CCCHHHHHHHHHHhh
Confidence 468899886 568998888887643
No 380
>PLN02422 dephospho-CoA kinase
Probab=45.37 E-value=24 Score=35.73 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
||.|.||||..| ||+ .++.+|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 788999999755 787 4556666788877
No 381
>PRK12377 putative replication protein; Provisional
Probab=45.11 E-value=34 Score=34.86 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.8
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
.++++|. +|.||.-+|.+|+..|...|++|..+..
T Consensus 103 ~l~l~G~--~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVFSGK--PGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 4678864 5999999999999999999999976655
No 382
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=45.07 E-value=36 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+.++|+|. +|.||..++..++..+...+.+|..+-.
T Consensus 20 ~~v~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 20 KNLLLYGP--PGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CeEEEECC--CCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 46888875 6999999999999999876777666554
No 383
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=45.04 E-value=20 Score=37.82 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=27.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
.|||||| |.=||+|+. +|+-|-++||+|..
T Consensus 29 ~k~VlIT-GCDSGfG~~-----LA~~L~~~Gf~V~A 58 (322)
T KOG1610|consen 29 DKAVLIT-GCDSGFGRL-----LAKKLDKKGFRVFA 58 (322)
T ss_pred CcEEEEe-cCCcHHHHH-----HHHHHHhcCCEEEE
Confidence 3899999 889999975 88999999999987
No 384
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=44.99 E-value=32 Score=36.64 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.7
Q ss_pred hccCCCeEEEcCCCCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 008567 359 TLRNAECVLVPGGFGDRGV---GGMILAAKYARENNIPYLGICLGMQISVIE 407 (561)
Q Consensus 359 ~l~~~DGIilpGG~G~~~~---~g~i~~ir~a~e~~iPvLGICLGmQLL~ie 407 (561)
....+|-|++.+|.+.... .....+++.+..++.++-|||.|-=+|+-+
T Consensus 73 ~~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 73 AAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred ccCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 3445888888787766432 458899999999999999999999998543
No 385
>PRK06398 aldose dehydrogenase; Validated
Probab=44.95 E-value=23 Score=35.39 Aligned_cols=30 Identities=40% Similarity=0.475 Sum_probs=24.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||| ..+|+|+. +++.|.++|++|...
T Consensus 7 k~vlItG-as~gIG~~-----ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTG-GSQGIGKA-----VVNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEEC-CCchHHHH-----HHHHHHHCCCeEEEE
Confidence 7899995 57899876 567888899999864
No 386
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=44.87 E-value=1.9e+02 Score=30.40 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=68.3
Q ss_pred ccchHHHHHhCCCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCCccC
Q 008567 197 TQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIA 276 (561)
Q Consensus 197 tq~sv~~l~s~Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~~~~ 276 (561)
.+.+++-|.+. +|+|++|... ......++..+.+ .||+.-+ +-++=+ |.+.+
T Consensus 88 l~Dt~~~l~~~---~D~iv~R~~~---~~~~~~~a~~~~v---PVINag~--~~~HPt-----QaL~D------------ 139 (304)
T PRK00779 88 IEDTARVLSRY---VDAIMIRTFE---HETLEELAEYSTV---PVINGLT--DLSHPC-----QILAD------------ 139 (304)
T ss_pred HHHHHHHHHHh---CCEEEEcCCC---hhHHHHHHHhCCC---CEEeCCC--CCCChH-----HHHHH------------
Confidence 34444555444 8999999753 3344445555554 4777754 333333 33321
Q ss_pred CCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCccccc-c-----c---
Q 008567 277 APPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDES-A-----K--- 347 (561)
Q Consensus 277 ~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~-~-----~--- 347 (561)
+.. +.+... .-+++||+++|+... .-.|.+.++...|+++.+ +.++.+.... . .
T Consensus 140 ----l~T---i~e~~g-~l~gl~i~~vGd~~~---v~~Sl~~~l~~~g~~v~~------~~P~~~~~~~~~~~~~~~~~g 202 (304)
T PRK00779 140 ----LLT---IYEHRG-SLKGLKVAWVGDGNN---VANSLLLAAALLGFDLRV------ATPKGYEPDPEIVEKIAKETG 202 (304)
T ss_pred ----HHH---HHHHhC-CcCCcEEEEEeCCCc---cHHHHHHHHHHcCCEEEE------ECCcccCCCHHHHHHHHHHcC
Confidence 111 111111 124589999998533 348999999998987654 4444443210 0 0
Q ss_pred CCCcchhhHHHhccCCCeEEEc
Q 008567 348 LTPKDHAAAWETLRNAECVLVP 369 (561)
Q Consensus 348 ~d~~~~~~~~~~l~~~DGIilp 369 (561)
.....+++..+.++++|-|...
T Consensus 203 ~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 203 ASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred CeEEEEcCHHHHhCCCCEEEec
Confidence 0001123445667888977765
No 387
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.87 E-value=24 Score=35.73 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=24.4
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|-++||||. .+|||+. +++.|.++|++|..
T Consensus 11 k~~lItGas~~~GIG~a-----ia~~la~~G~~V~l 41 (272)
T PRK08159 11 KRGLILGVANNRSIAWG-----IAKACRAAGAELAF 41 (272)
T ss_pred CEEEEECCCCCCcHHHH-----HHHHHHHCCCEEEE
Confidence 678999887 4899976 66778889999865
No 388
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=44.77 E-value=36 Score=32.44 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=29.0
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||+||- .|+||..+..-+...|+..|++|.=|-.
T Consensus 2 i~iTG~--pG~GKTTll~k~i~~l~~~~~~v~Gf~t 35 (168)
T PF03266_consen 2 IFITGP--PGVGKTTLLKKVIEELKKKGLPVGGFYT 35 (168)
T ss_dssp EEEES---TTSSHHHHHHHHHHHHHHTCGGEEEEEE
T ss_pred EEEECc--CCCCHHHHHHHHHHHhhccCCccceEEe
Confidence 799974 6999999999999999999999875554
No 389
>PRK08703 short chain dehydrogenase; Provisional
Probab=44.60 E-value=25 Score=34.32 Aligned_cols=30 Identities=40% Similarity=0.572 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||| ..+|+|+. +++.|.++|++|...
T Consensus 7 k~vlItG-~sggiG~~-----la~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTG-ASQGLGEQ-----VAKAYAAAGATVILV 36 (239)
T ss_pred CEEEEEC-CCCcHHHH-----HHHHHHHcCCEEEEE
Confidence 7899994 57899976 566777889988763
No 390
>PRK08267 short chain dehydrogenase; Provisional
Probab=44.55 E-value=25 Score=34.79 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=24.1
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
||-++||||. +|+|+. +++.|.++|++|..+
T Consensus 1 mk~vlItGas-g~iG~~-----la~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRA-----TALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEE
Confidence 6889999655 788764 666677889998875
No 391
>PRK02496 adk adenylate kinase; Provisional
Probab=44.41 E-value=27 Score=33.12 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+-|+|+|+ +|.||+.+|+.|+..+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 456888976 8999998888887755
No 392
>PRK13695 putative NTPase; Provisional
Probab=44.41 E-value=40 Score=31.70 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=25.6
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|++||. +|.||..++..|...|+..|+++.-
T Consensus 3 i~ltG~--~G~GKTTll~~i~~~l~~~G~~~~g 33 (174)
T PRK13695 3 IGITGP--PGVGKTTLVLKIAELLKEEGYKVGG 33 (174)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 567765 8999999999998888888988653
No 393
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.16 E-value=25 Score=34.72 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|| |..||+|+. +++.|..+|++|...
T Consensus 6 k~~lVt-Gas~GIG~a-----ia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILIT-SAGSVLGRT-----ISCHFARLGATLILC 35 (227)
T ss_pred eEEEEE-CCccHHHHH-----HHHHHHHCCCEEEEE
Confidence 689999 666799876 667788899998764
No 394
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=44.10 E-value=24 Score=38.46 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=21.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+.|.||||..| ||+ .+|++|+..|+.|
T Consensus 1 m~~IgltG~igs--GKS----tv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GKS----TVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 788999998755 786 5666777788876
No 395
>PRK06762 hypothetical protein; Provisional
Probab=44.07 E-value=35 Score=31.64 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
+.|.++| .+|.||+.+|..|...|
T Consensus 3 ~li~i~G--~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRG--NSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHh
Confidence 5678885 47889999999888776
No 396
>PRK09620 hypothetical protein; Provisional
Probab=44.05 E-value=31 Score=34.67 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=31.5
Q ss_pred EEEEEeCC----------ccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGG----------VVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~gg----------v~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-|+||+| .+|.-=-|-+.+.|++.|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 45889987 6777778999999999999999999886
No 397
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=44.04 E-value=42 Score=37.82 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.1
Q ss_pred EEEEEeCCccC---CCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVS---GLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S---~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|+|+|| .... |=||..++..|+..|.+.|.+|..+
T Consensus 39 k~IlVT-s~~PTp~GEGKTT~si~La~~la~~Gkk~l~~ 76 (524)
T cd00477 39 KLILVT-AITPTPAGEGKTTTTIGLAQALNAHGKKAIAC 76 (524)
T ss_pred eEEEEE-eCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 899999 7666 9999999999999999999998866
No 398
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=43.92 E-value=35 Score=35.18 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=26.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
|.++||||. |-+.+.|.+.|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999764 5667888888999999987654443
No 399
>PRK07890 short chain dehydrogenase; Provisional
Probab=43.88 E-value=28 Score=34.31 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.|+|||| .||+|+ ++++.|.++|++|...-.
T Consensus 6 k~vlItGa-~~~IG~-----~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGR-----TLAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHH-----HHHHHHHHcCCEEEEEeC
Confidence 67999965 778885 567777889999887643
No 400
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.63 E-value=27 Score=35.06 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.3
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|-++||||. .+|||+ ++++.|.+.|++|..
T Consensus 7 k~vlItGas~~~GIG~-----a~a~~l~~~G~~v~~ 37 (260)
T PRK06997 7 KRILITGLLSNRSIAY-----GIAKACKREGAELAF 37 (260)
T ss_pred cEEEEeCCCCCCcHHH-----HHHHHHHHCCCeEEE
Confidence 679999885 689997 467778889999865
No 401
>PRK05866 short chain dehydrogenase; Provisional
Probab=43.33 E-value=22 Score=36.48 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .||+|+. +++.|.++|++|...
T Consensus 41 k~vlItGa-sggIG~~-----la~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEA-----AAEQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHH-----HHHHHHHCCCEEEEE
Confidence 67999955 6888865 566677889988764
No 402
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=43.22 E-value=29 Score=34.46 Aligned_cols=32 Identities=38% Similarity=0.476 Sum_probs=24.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++|| |..+|+|+. +++.|.++|++|...-.
T Consensus 10 k~vlIt-G~s~gIG~~-----la~~l~~~G~~v~~~~~ 41 (266)
T PRK06171 10 KIIIVT-GGSSGIGLA-----IVKELLANGANVVNADI 41 (266)
T ss_pred CEEEEe-CCCChHHHH-----HHHHHHHCCCEEEEEeC
Confidence 679999 555888865 56678889999987543
No 403
>PRK12829 short chain dehydrogenase; Provisional
Probab=43.17 E-value=28 Score=34.30 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++||||. +++| +++++.|.++|++|..+-.
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeC
Confidence 679999764 7776 6778888899999877543
No 404
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=43.17 E-value=64 Score=34.31 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=30.3
Q ss_pred EEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 4 VLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 4 i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|+..|.. +.|-||--++..|.+.|+++|++|..++-
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 3344333 56999999999999999999999999987
No 405
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.08 E-value=1.2e+02 Score=33.89 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred eEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcc---------cccccCCCcchhhHHHhccCCCeEEE
Q 008567 298 VRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLE---------DESAKLTPKDHAAAWETLRNAECVLV 368 (561)
Q Consensus 298 ~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~---------~~~~~~d~~~~~~~~~~l~~~DGIil 368 (561)
.||+|+| ++... .+..+.|...|+.+.+ .+..... .+........... +.+.++|-|++
T Consensus 8 ~kv~V~G-LG~sG---~a~a~~L~~~G~~v~v------~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~ 75 (448)
T COG0771 8 KKVLVLG-LGKSG---LAAARFLLKLGAEVTV------SDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVK 75 (448)
T ss_pred CEEEEEe-ccccc---HHHHHHHHHCCCeEEE------EcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEE
Q ss_pred cCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 008567 369 PGGFGDRGVGGMILAAKYARENNIPYLG 396 (561)
Q Consensus 369 pGG~G~~~~~g~i~~ir~a~e~~iPvLG 396 (561)
++|..-..- .++.|+..++|++|
T Consensus 76 SPGi~~~~p-----~v~~A~~~gi~i~~ 98 (448)
T COG0771 76 SPGIPPTHP-----LVEAAKAAGIEIIG 98 (448)
T ss_pred CCCCCCCCH-----HHHHHHHcCCcEEe
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=43.06 E-value=1.5e+02 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccCCCCCCC--CCCEEEEecCCcccccccc
Q 008567 119 DAIKNWIESVAVIPVDGKEG--PADVCVIELGGTVGDIESM 157 (561)
Q Consensus 119 ~~i~~~i~~~~~~~~~~~~~--~~d~~i~E~gGtvgdie~~ 157 (561)
+...+.+.++.. .. +||.+|||-.| ..|-..+
T Consensus 68 ~~~~~~l~~l~~------~~~~~~d~IiIE~sG-~a~p~~l 101 (178)
T PF02492_consen 68 DDLVEALRRLLR------EYEERPDRIIIETSG-LADPAPL 101 (178)
T ss_dssp S-HHHHHHHHCC------CCHGC-SEEEEEEEC-SSGGGGH
T ss_pred HHHHHHHHHHHH------hcCCCcCEEEECCcc-ccccchh
Confidence 355566777763 34 79999999999 7887777
No 407
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=43.02 E-value=26 Score=34.88 Aligned_cols=30 Identities=47% Similarity=0.665 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .+|+|+. +++.|.++|++|...
T Consensus 6 k~vlItGa-s~gIG~~-----ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGG-ASGLGRA-----IVDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECC-CChHHHH-----HHHHHHHCCCEEEEE
Confidence 78999955 6888854 667788899998763
No 408
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.01 E-value=26 Score=35.09 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=24.7
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||||- .||+|+. +++.|.++|++|...
T Consensus 8 k~~lItGa~~s~GIG~a-----~a~~la~~G~~v~l~ 39 (256)
T PRK07889 8 KRILVTGVITDSSIAFH-----VARVAQEQGAEVVLT 39 (256)
T ss_pred CEEEEeCCCCcchHHHH-----HHHHHHHCCCEEEEe
Confidence 679999774 7999976 567788899998763
No 409
>PRK09183 transposase/IS protein; Provisional
Probab=42.91 E-value=36 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=28.9
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
.++++|. +|.||..++.+||..+...|++|.-+.
T Consensus 104 ~v~l~Gp--~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 104 NIVLLGP--SGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred eEEEEeC--CCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3677864 699999999999999999999997654
No 410
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=42.64 E-value=34 Score=31.76 Aligned_cols=39 Identities=33% Similarity=0.302 Sum_probs=26.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPY 42 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpy 42 (561)
+.++|+|. +|.||..+...+-..++.++.-+..+.+++.
T Consensus 25 ~~~ll~G~--~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGE--SGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B---TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57889964 8999999999888888887544777666544
No 411
>PRK07035 short chain dehydrogenase; Provisional
Probab=42.43 E-value=26 Score=34.46 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++|| |..|||| .++++.|.++|++|...
T Consensus 9 k~vlIt-Gas~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVT-GASRGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEE-CCCcHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999 5558888 45778888899998765
No 412
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=42.18 E-value=44 Score=35.20 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|-|++. |+=+.+||=.++-.|.+.|+++|+++..+=.
T Consensus 113 ~rv~~v-GTDcavGK~tTal~L~~~l~~~G~~a~fvaT 149 (301)
T PF07755_consen 113 KRVLTV-GTDCAVGKMTTALELRRALRERGINAGFVAT 149 (301)
T ss_dssp EEEEEE-ESSSSSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred CEEEEE-ccCccccHHHHHHHHHHHHHHcCCCceEEec
Confidence 456666 9999999999999999999999999998877
No 413
>PRK07102 short chain dehydrogenase; Provisional
Probab=42.12 E-value=26 Score=34.39 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
||-++|||| .+|+|+. +++.|.++|++|...=.
T Consensus 1 ~~~vlItGa-s~giG~~-----~a~~l~~~G~~Vi~~~r 33 (243)
T PRK07102 1 MKKILIIGA-TSDIARA-----CARRYAAAGARLYLAAR 33 (243)
T ss_pred CcEEEEEcC-CcHHHHH-----HHHHHHhcCCEEEEEeC
Confidence 688999965 4888865 55566678999877644
No 414
>COG4240 Predicted kinase [General function prediction only]
Probab=42.12 E-value=38 Score=34.56 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=29.5
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCC-CeeeEeecC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACG-LRVTSIKID 40 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g-~~v~~~K~d 40 (561)
+++|+|- -|-||+.+|+.|-++|.++| +++..+-+|
T Consensus 52 i~gisGp--QGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 52 IVGISGP--QGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred EEEeecC--CCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 4667754 36689999999999999999 688877775
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=42.09 E-value=24 Score=33.21 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKAC 30 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~ 30 (561)
+.|+|+| .||.||+.++..|+.+|...
T Consensus 2 ~~~~i~G--~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVG--PSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEEC--CCCCCHHHHHHHHHHHcCcC
Confidence 4677885 58999999999998887543
No 416
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=42.03 E-value=1.2e+02 Score=29.83 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccc-----cc---cHHHHHHHhhccccCCCCEEEEEEeeeeEeCC
Q 008567 117 ITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDI-----ES---MPFIEALRQLSFSVGPDNFCLIHVSLIPVLGV 188 (561)
Q Consensus 117 ~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdi-----e~---~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~ 188 (561)
-.++|.+.|+.+.. ..++++|||--=..+..- +. .-+++.++++..+.+ +..+-++-++-- +
T Consensus 107 ~~~~l~~~i~~~~~------~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~---~~ii~~~q~~r~-~ 176 (242)
T cd00984 107 TVSDIRSRARRLKK------EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELN---VPVIALSQLSRG-V 176 (242)
T ss_pred CHHHHHHHHHHHHH------hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhC---CeEEEecccChh-h
Confidence 36889999988763 347899998754333111 11 124555555555554 333333322211 0
Q ss_pred CCccccCCccchHHHHHhCCCcccEEE
Q 008567 189 VGEQKTKPTQHSVRELRALGLTPHLLA 215 (561)
Q Consensus 189 ~~e~ktkptq~sv~~l~s~Gi~pd~iI 215 (561)
.+..+-+|+.+.++.-....=.+|.++
T Consensus 177 ~~~~~~~~~~~~~~gS~~i~~~aD~vi 203 (242)
T cd00984 177 ESRADKRPMLSDLRESGSIEQDADVVM 203 (242)
T ss_pred hccCCCCCCHHHHhhhcccccCCCEEE
Confidence 111233677777775555555688877
No 417
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=42.01 E-value=18 Score=34.90 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=15.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
+.||+.|+ |+.||+.+|..|-..|
T Consensus 2 ~iI~LNG~--sSSGKSsia~~Lq~~~ 25 (174)
T PF07931_consen 2 QIIILNGP--SSSGKSSIARALQERL 25 (174)
T ss_dssp -EEEEEE---TTSSHHHHHHHHHHHS
T ss_pred eEEEEeCC--CCCCHHHHHHHHHHhC
Confidence 67899954 5569976665555544
No 418
>PRK04296 thymidine kinase; Provisional
Probab=41.96 E-value=66 Score=31.03 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
+.+++||.+ |.||...+--+..-+..+|.+|..+|
T Consensus 3 ~i~litG~~--GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAM--NSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCC--CCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467888643 44566555555555667899999986
No 419
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=41.89 E-value=27 Score=31.61 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhh-HHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 008567 314 LSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAA-AWETLRNAECVLVPGGFGDRGVGGMILAAKYARENNI 392 (561)
Q Consensus 314 ~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~-~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~i 392 (561)
..+.+.|+..|+++..... + +++.+. ..+ ..+.+..+|-||.+||-|--...-..++++.+....+
T Consensus 21 ~~l~~~l~~~G~~~~~~~~---v-~Dd~~~---------I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~ 87 (135)
T smart00852 21 PALAELLTELGIEVTRYVI---V-PDDKEA---------IKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGKEL 87 (135)
T ss_pred HHHHHHHHHCCCeEEEEEE---e-CCCHHH---------HHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcC
Confidence 3567778999987643211 1 222110 001 1123457999999998663223333445554443334
Q ss_pred C
Q 008567 393 P 393 (561)
Q Consensus 393 P 393 (561)
|
T Consensus 88 ~ 88 (135)
T smart00852 88 P 88 (135)
T ss_pred C
Confidence 4
No 420
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=41.85 E-value=28 Score=34.42 Aligned_cols=30 Identities=40% Similarity=0.501 Sum_probs=24.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++|| |..+++| .+|++.|.++|++|...
T Consensus 7 ~~vlIt-Gas~~iG-----~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 7 KVALLT-GAASGIG-----EAVAERYLAEGARVVIA 36 (257)
T ss_pred CEEEEe-CCCchHH-----HHHHHHHHHcCCEEEEE
Confidence 679999 5567887 46788888999998765
No 421
>PRK06182 short chain dehydrogenase; Validated
Probab=41.70 E-value=29 Score=34.74 Aligned_cols=31 Identities=42% Similarity=0.505 Sum_probs=24.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|.|+|| |..||+|+. +++.|.++|++|...-
T Consensus 4 k~vlIt-GasggiG~~-----la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVT-GASSGIGKA-----TARRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEE-CCCChHHHH-----HHHHHHHCCCEEEEEe
Confidence 789999 557888876 5677778999998643
No 422
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=41.70 E-value=27 Score=34.20 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
+.|+|+ | +||.||+.+|..|+.-|
T Consensus 4 ~~i~i~-G-~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIG-G-IPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHhc
Confidence 345555 4 69999999998887753
No 423
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=41.26 E-value=23 Score=34.39 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCchHHHHHHHHHHHHHC--CCeeeEeec
Q 008567 12 SGLGKGVTASSVGVVLKAC--GLRVTSIKI 39 (561)
Q Consensus 12 S~~GKg~~~~s~~~ll~~~--g~~v~~~K~ 39 (561)
-|=|||.++|++|..|++. |+||.++.+
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 4679999999999999985 567877654
No 424
>PRK06547 hypothetical protein; Provisional
Probab=41.09 E-value=34 Score=32.73 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=18.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHH
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVV 26 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~l 26 (561)
..|.|+| .||-||+.+|..|...
T Consensus 16 ~~i~i~G--~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 16 ITVLIDG--RSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHH
Confidence 5688885 6899999999888775
No 425
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.06 E-value=30 Score=34.27 Aligned_cols=29 Identities=31% Similarity=0.612 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++|||| .||+|+. +++.|.++|++|..
T Consensus 8 k~~lItGa-s~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGG-TRGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCC-CChHHHH-----HHHHHHHCCCEEEE
Confidence 78999965 6999965 67888889999865
No 426
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=40.96 E-value=30 Score=35.66 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=26.8
Q ss_pred CEEEEEeCCccCCCchHHH-HHHHHHHHHHCCCeeeEee
Q 008567 1 MKYVLVTGGVVSGLGKGVT-ASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~-~~s~~~ll~~~g~~v~~~K 38 (561)
||.+|++||+. -.+. +..|++-|+.+|++|+.+-
T Consensus 1 ~~i~~~~g~~~----g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGTG----GHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCccH----HHHhHHHHHHHHHHhCCCEEEEEe
Confidence 68889998884 3333 3489999999999998874
No 427
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=40.87 E-value=35 Score=34.26 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=32.4
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
.|-|+|| ||-||..+|.-|+..|+.. +|+.+-.|=|-+
T Consensus 10 iIgIaG~--SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 10 IIGIAGG--SGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred EEEEeCC--CCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 5667776 7779999999999999866 999999999888
No 428
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=40.72 E-value=26 Score=37.18 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCCchhHHHHHHHHHHHc
Q 008567 311 DSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDRGVGGMILAAKYAREN 390 (561)
Q Consensus 311 DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~~~~g~i~~ir~a~e~ 390 (561)
++-.-+.+.|..+|++..+ +..+++. +.+..+|.||=.||-|+- +.+.-..+..
T Consensus 75 n~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGTf-----L~Aasrv~~~ 128 (395)
T KOG4180|consen 75 NAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGTF-----LLAASRVIDD 128 (395)
T ss_pred HHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccce-----eehhhhhhcc
Confidence 4446688889999998544 3333321 347788999999998762 2233336678
Q ss_pred CCCEEEE
Q 008567 391 NIPYLGI 397 (561)
Q Consensus 391 ~iPvLGI 397 (561)
.+|++||
T Consensus 129 ~~PViGv 135 (395)
T KOG4180|consen 129 SKPVIGV 135 (395)
T ss_pred CCceeee
Confidence 8999998
No 429
>PRK08303 short chain dehydrogenase; Provisional
Probab=40.62 E-value=27 Score=36.23 Aligned_cols=30 Identities=40% Similarity=0.601 Sum_probs=23.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||| ..||+|+. +++.|.+.|++|...
T Consensus 9 k~~lITG-gs~GIG~a-----ia~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAG-ATRGAGRG-----IAVELGAAGATVYVT 38 (305)
T ss_pred CEEEEeC-CCchHHHH-----HHHHHHHCCCEEEEE
Confidence 7899995 55899965 567777899998764
No 430
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.57 E-value=1.5e+02 Score=29.10 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=20.8
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGI 397 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGI 397 (561)
.++||||+.++. + ......++++.+.++|+..+
T Consensus 54 ~~vdgii~~~~~--~--~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHGR--A--EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecCC--h--hhhHHHHHHHHHcCCCEEEe
Confidence 479999997532 1 11234456677788897654
No 431
>PRK06835 DNA replication protein DnaC; Validated
Probab=40.55 E-value=42 Score=35.66 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.3
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
-+++.|. +|.||.-++.+||.-|..+|++|.-+-.
T Consensus 185 ~Lll~G~--~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 185 NLLFYGN--TGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred cEEEECC--CCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 4788864 5999999999999999999999987665
No 432
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=40.39 E-value=62 Score=34.26 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=59.6
Q ss_pred ceEE-cCCCcccccCCcccccccC--C--CCCCCCcccccchhhH---Hh-hhhhcCCCCCCeeEEecccHHHHHHHHHH
Q 008567 57 EVFV-LDDGGEVDLDLGNYERFLD--V--RLTKNNNITTGKIYQS---VL-EKERKGDYLGKTVQVVPHITDAIKNWIES 127 (561)
Q Consensus 57 ev~V-~~dG~E~dldlg~yerf~~--~--~l~~~~~~tsGk~y~~---vi-~~er~g~y~g~tvq~iph~~~~i~~~i~~ 127 (561)
++.+ ...||.- |+|+||-+ . -|+-.+.+..|+++.. .| +.-++-.+.=..+.++|.=-++|++.|.+
T Consensus 135 ~~~l~~k~ggks----g~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~ 210 (312)
T PRK03604 135 GIRLLEKTGGKS----GHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAA 210 (312)
T ss_pred eEEEEEeeCCCC----CcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHH
Confidence 4444 4679999 99999976 1 2344455566776544 11 11222223223445778888899999988
Q ss_pred hhccCCCCCCCCCCEEEEecCCc-cccccccHHHHHHHhhc
Q 008567 128 VAVIPVDGKEGPADVCVIELGGT-VGDIESMPFIEALRQLS 167 (561)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~E~gGt-vgdie~~~f~ea~~q~~ 167 (561)
+.. ..+|++|+= ||| +|+-- ...||++.+-
T Consensus 211 a~~-------~~~DlIITT-GGtg~g~~D--~tpeAl~~lg 241 (312)
T PRK03604 211 WIA-------EGYALIITT-GGTGLGPRD--VTPEALAPLL 241 (312)
T ss_pred hhh-------CCCCEEEEC-CCCCCCCCc--cHHHHHHHhc
Confidence 842 468998887 554 43332 3348888764
No 433
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.32 E-value=35 Score=37.29 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=31.0
Q ss_pred EEEEEeCC----------ccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGG----------VVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~gg----------v~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|-++|||| .+|.-.-|.+..+|++.|..+|.+|+.+-.
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~ 236 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSG 236 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 56899999 566666677778999999999999988643
No 434
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=40.32 E-value=23 Score=34.02 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=21.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHH
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLK 28 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~ 28 (561)
+||++|.=|| ||-||+.++..|+.-|.
T Consensus 11 ~k~~i~vmGv-sGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 11 FKYVIVVMGV-SGSGKSTIGKALSEELG 37 (191)
T ss_pred CceeEEEEec-CCCChhhHHHHHHHHhC
Confidence 3776666464 89999999999988775
No 435
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=40.31 E-value=33 Score=33.61 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
+|-|+|||| .+|+|+. +++.|.++|++|..
T Consensus 2 ~k~ilItGa-s~giG~~-----la~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGA-SRGIGRA-----TAVLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCC-CCcHHHH-----HHHHHHHCCCEEEE
Confidence 578999965 5888865 66777788988754
No 436
>PRK07261 topology modulation protein; Provisional
Probab=40.19 E-value=23 Score=33.58 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEeCCccCCCchHHHHHHHHHHH
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+|+| .||.||+.+|..|++.+
T Consensus 3 i~i~G--~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIG--YSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHh
Confidence 77885 89999999999987654
No 437
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=40.09 E-value=28 Score=36.39 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.8
Q ss_pred EEEEEeCCc-cCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGV-VSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv-~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|-++|||+- .||||+. +++.|.+.|.+|..
T Consensus 10 k~alITGa~~s~GIG~a-----~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 10 KRAFIAGVADDNGYGWA-----IAKALAAAGAEILV 40 (303)
T ss_pred CEEEEeCCCCCCcHHHH-----HHHHHHHCCCEEEE
Confidence 789999776 7999975 67899999999975
No 438
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=39.92 E-value=47 Score=32.60 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=28.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHH-HCCCeeeEeecCc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLK-ACGLRVTSIKIDP 41 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~-~~g~~v~~~K~dp 41 (561)
+.+.|.|. +|-||+.++++|..-|. ..|.+|.. +||
T Consensus 24 ~H~~I~G~--TGsGKS~~~~~ll~~l~~~~~~~~ii--~D~ 60 (229)
T PF01935_consen 24 RHIAIFGT--TGSGKSNTVKVLLEELLKKKGAKVII--FDP 60 (229)
T ss_pred ceEEEECC--CCCCHHHHHHHHHHHHHhcCCCCEEE--EcC
Confidence 45678864 57799999999999988 88887776 455
No 439
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.85 E-value=88 Score=32.38 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 362 NAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 362 ~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
++|.+|.-||-|+ ++.+++ ....|+|||=+|.
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~~---~~~~PilGIN~G~ 83 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTLQ---RAKGPILGINMGG 83 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHHH---HcCCCEEEEECCC
Confidence 7899999998775 333433 3457999999983
No 440
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=39.84 E-value=31 Score=33.76 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .+|+|+ ++++.|.++|++|...
T Consensus 6 k~vlItGa-s~gIG~-----~ia~~l~~~G~~vi~~ 35 (248)
T TIGR01832 6 KVALVTGA-NTGLGQ-----GIAVGLAEAGADIVGA 35 (248)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEE
Confidence 78999955 677775 5677788899988663
No 441
>PRK03839 putative kinase; Provisional
Probab=39.82 E-value=33 Score=32.40 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHH
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+++| ++|.||+.++..|++.|
T Consensus 3 I~l~G--~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITG--TPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHh
Confidence 78885 57999999888888866
No 442
>PRK06526 transposase; Provisional
Probab=39.78 E-value=32 Score=35.14 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=27.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
-++++|. +|.||..+|.+||.-+..+|++|..
T Consensus 100 nlll~Gp--~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 100 NVVFLGP--PGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred eEEEEeC--CCCchHHHHHHHHHHHHHCCCchhh
Confidence 4678864 6999999999999999999999855
No 443
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.77 E-value=32 Score=33.99 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|| |..+|+|+ ++++.|.++|++|...
T Consensus 9 k~vlVt-Gas~gIG~-----~la~~l~~~G~~v~~~ 38 (260)
T PRK12823 9 KVVVVT-GAAQGIGR-----GVALRAAAEGARVVLV 38 (260)
T ss_pred CEEEEe-CCCchHHH-----HHHHHHHHCCCEEEEE
Confidence 679999 55688885 4677788899998764
No 444
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=39.67 E-value=39 Score=36.42 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=28.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.|=|| |+ =|||.+++-|..+|++.|++|-.+-.
T Consensus 19 ~vI~Vt-GT---NGKgSt~~~l~~iL~~~g~~vg~~tS 52 (397)
T TIGR01499 19 PVIHVA-GT---NGKGSTCAFLESILRAAGYKVGLFTS 52 (397)
T ss_pred CEEEEe-CC---CChHHHHHHHHHHHHHcCCCeeEEeC
Confidence 567777 43 59999999999999999999988754
No 445
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.65 E-value=28 Score=36.06 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .||||+. +++.|..+|++|...
T Consensus 15 k~~lITGa-s~GIG~~-----~a~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGA-SDGLGLG-----LARRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCC-CChHHHH-----HHHHHHHCCCEEEEE
Confidence 67999966 5999975 556677889998764
No 446
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=39.64 E-value=33 Score=29.79 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=37.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCC-CeeeEeecCcc-ccCCCCCCCCccccceEEcCCC
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACG-LRVTSIKIDPY-LNTDAGTMSPFEHGEVFVLDDG 64 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g-~~v~~~K~dpy-ln~d~g~msp~~hgev~V~~dG 64 (561)
|++.|.. |.||+.+|..|++-|.+.- ..- +-+=| .|.+--.++-|++=+|.+-||=
T Consensus 1 I~i~G~~--G~GKS~l~~~l~~~l~~~~~~~~---~~~vy~~~~~~~~w~gY~~q~vvi~DD~ 58 (107)
T PF00910_consen 1 IWIYGPP--GIGKSTLAKELAKDLLKHIGEPT---KDSVYTRNPGDKFWDGYQGQPVVIIDDF 58 (107)
T ss_pred CEEECCC--CCCHHHHHHHHHHHHHHHhccCC---CCcEEeCCCccchhhccCCCcEEEEeec
Confidence 5677543 9999999999888776533 111 11112 3666667788887788888873
No 447
>PRK08356 hypothetical protein; Provisional
Probab=39.60 E-value=39 Score=32.60 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=19.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
+.|+++|+ +|.|||.+|.-| +..|+.+
T Consensus 6 ~~i~~~G~--~gsGK~t~a~~l----~~~g~~~ 32 (195)
T PRK08356 6 MIVGVVGK--IAAGKTTVAKFF----EEKGFCR 32 (195)
T ss_pred EEEEEECC--CCCCHHHHHHHH----HHCCCcE
Confidence 56888975 688999877665 4567763
No 448
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.42 E-value=32 Score=33.84 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .+++|+ +|++.|.++|++|..+
T Consensus 3 k~vlItG~-sg~iG~-----~la~~L~~~g~~vi~~ 32 (256)
T PRK12745 3 PVALVTGG-RRGIGL-----GIARALAAAGFDLAIN 32 (256)
T ss_pred cEEEEeCC-CchHHH-----HHHHHHHHCCCEEEEE
Confidence 78999954 667764 5778888899987654
No 449
>PF12846 AAA_10: AAA-like domain
Probab=39.42 E-value=46 Score=33.34 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=29.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCc
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDP 41 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dp 41 (561)
-++|+|. +|-||..++.++..-+..+|..|..+ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678865 68899999999999999999888886 55
No 450
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=39.40 E-value=34 Score=33.32 Aligned_cols=30 Identities=37% Similarity=0.648 Sum_probs=22.9
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
||.++|||| .+++|.. +.+.|.++|++|..
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 688999955 6788865 66667788998865
No 451
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.40 E-value=4.8e+02 Score=27.43 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCC
Q 008567 117 ITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKP 196 (561)
Q Consensus 117 ~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkp 196 (561)
+.++|++.+.++.. ..+..|-+++|=+|.-. .|.-|++.......++|=. +-++. |. .+-
T Consensus 14 i~~~i~~~v~~l~~----~~g~~p~La~i~vg~~~---~s~~Yv~~k~k~a~~~Gi~---~~~~~----l~--~~~---- 73 (296)
T PRK14188 14 VRATVAAEVARLKA----AHGVTPGLAVVLVGEDP---ASQVYVRSKGKQTKEAGMA---SFEHK----LP--ADT---- 73 (296)
T ss_pred HHHHHHHHHHHHHH----ccCCCCeEEEEEeCCCh---hHHHHHHHHHHHHHHcCCE---EEEEE----CC--CCC----
Confidence 45666666666531 01246899999888655 5689999999999999833 22222 21 111
Q ss_pred cc-chHHHHHhC--CCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCC
Q 008567 197 TQ-HSVRELRAL--GLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLL 273 (561)
Q Consensus 197 tq-~sv~~l~s~--Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~ 273 (561)
|| .-.+.++++ --..|+|++- .|+|++..++--+ +.|.+..|||-.- | ...|-+ ....-.+-
T Consensus 74 ~~~el~~~i~~lN~d~~V~GIlvq--~Plp~~~~~~~i~------~~I~p~KDVDGl~--~---~n~g~l--~~~~~~~~ 138 (296)
T PRK14188 74 SQAELLALIARLNADPAIHGILVQ--LPLPKHLDSEAVI------QAIDPEKDVDGLH--V---VNAGRL--ATGETALV 138 (296)
T ss_pred CHHHHHHHHHHHhCCCCCcEEEEe--CCCCCCCCHHHHH------hccCcccccccCC--h---hhHHHH--hCCCCCCc
Confidence 11 122333333 2345677775 4566655433211 3555666777551 0 111111 11111110
Q ss_pred ccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeee
Q 008567 274 SIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSL 329 (561)
Q Consensus 274 ~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v 329 (561)
+. ....--++.+...-.-.+.+|+|+|.-.-.. .-+...|..+|+.+.+
T Consensus 139 ---Pc-Tp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG---~PmA~~L~~~g~tVtv 187 (296)
T PRK14188 139 ---PC-TPLGCMMLLRRVHGDLSGLNAVVIGRSNLVG---KPMAQLLLAANATVTI 187 (296)
T ss_pred ---CC-CHHHHHHHHHHhCCCCCCCEEEEEcCCcchH---HHHHHHHHhCCCEEEE
Confidence 11 1111122444433333567999998664343 5688888889988765
No 452
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.31 E-value=34 Score=33.70 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++|| |..||+|. ++++.|.+.|++|..
T Consensus 5 k~~lIt-Gas~gIG~-----~ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVT-GASRGIGR-----AIAKRLANDGALVAI 33 (252)
T ss_pred CEEEEe-CCCChHHH-----HHHHHHHHCCCeEEE
Confidence 789999 55688885 567778899998865
No 453
>PRK07952 DNA replication protein DnaC; Validated
Probab=39.29 E-value=48 Score=33.74 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=29.1
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
-+++.|+ +|.||.-++++|+..|..+|.+|..+-.
T Consensus 101 ~~~l~G~--~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGK--PGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4677764 5999999999999999999999876643
No 454
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=39.27 E-value=52 Score=36.07 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=25.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.|-|| |+ -||..|++-|+.+|+..|++.+.
T Consensus 100 ~~IaIT-GT---nGKTTTt~ll~~iL~~~g~~~~~ 130 (448)
T TIGR01082 100 HSIAVA-GT---HGKTTTTAMIAVILKEAGLDPTV 130 (448)
T ss_pred cEEEEE-CC---CChHHHHHHHHHHHHHcCCCCeE
Confidence 578888 43 79999999999999999985443
No 455
>PRK07577 short chain dehydrogenase; Provisional
Probab=39.12 E-value=37 Score=32.81 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=25.1
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
|.|+||| ..+++|+ .+++.|.++|++|..+-.+
T Consensus 4 k~vlItG-~s~~iG~-----~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 4 RTVLVTG-ATKGIGL-----ALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CEEEEEC-CCCcHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 7899994 4567776 5677888899999886553
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=39.12 E-value=31 Score=29.81 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.0
Q ss_pred EEEeCCccCCCchHHHHHHHHHHH
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+|+| .+|.||+.+|..|...|
T Consensus 1 I~i~G--~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISG--IPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEE--STTSSHHHHHHHHHHHH
T ss_pred CEEEC--CCCCCHHHHHHHHHHHH
Confidence 67785 47889999888888877
No 457
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.10 E-value=32 Score=34.68 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=23.9
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.|+|||| .||+|+. +++.|.++|++|...-.
T Consensus 5 ~~vlVtGa-sggiG~~-----la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGV-SSGFGRA-----LAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecC-CChHHHH-----HHHHHHhCcCEEEEEeC
Confidence 78999955 5788755 56667788999987543
No 458
>PLN02780 ketoreductase/ oxidoreductase
Probab=38.92 E-value=27 Score=36.53 Aligned_cols=32 Identities=34% Similarity=0.580 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++|| |-.||+|+. +++.|.++|++|...=.
T Consensus 54 ~~~lIT-GAs~GIG~a-----lA~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVT-GPTDGIGKG-----FAFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEe-CCCcHHHHH-----HHHHHHHCCCCEEEEEC
Confidence 679999 557899976 66778889999887533
No 459
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=38.85 E-value=46 Score=32.31 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
++.+|+|+ .|-||..+.+.+...++..|++|...-
T Consensus 19 ~~~~l~G~--aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 19 RVSVLQGP--AGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp SEEEEEES--TTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEEC--CCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 47889976 899999999999999999998887653
No 460
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.83 E-value=4.9e+02 Score=27.44 Aligned_cols=193 Identities=14% Similarity=0.096 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCccccccccHHHHHHHhhccccCCCCEEEEEEeeeeEeCCCCccccCC
Q 008567 117 ITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFSVGPDNFCLIHVSLIPVLGVVGEQKTKP 196 (561)
Q Consensus 117 ~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtvgdie~~~f~ea~~q~~~~~~~~~~~~~~~t~~~~~~~~~e~ktkp 196 (561)
+.+++++.+..+.. .+..|-+++|-+|.-. +|.-|.+.......++|=. +-.+|+ | + + =
T Consensus 16 i~~~lk~~i~~l~~-----~g~~P~LaiI~vg~d~---as~~Yv~~k~k~a~~~Gi~-~~~~~l---~--~---~----~ 74 (301)
T PRK14194 16 VLAQVREDVRTLKA-----AGIEPALAVILVGNDP---ASQVYVRNKILRAEEAGIR-SLEHRL---P--A---D----T 74 (301)
T ss_pred HHHHHHHHHHHHHh-----CCCCCeEEEEEeCCCh---hHHHHHHHHHHHHHHcCCE-EEEEEC---C--C---C----C
Confidence 35566666666532 1357899999988755 6789999999999999833 322322 1 1 0 0
Q ss_pred ccc-hHHHHHhC--CCcccEEEEeecCCCCchhhhcccccCCCCCCCeeeeCCCCCcchhcHHHHhcchhhhhhhhcCCC
Q 008567 197 TQH-SVRELRAL--GLTPHLLACRSAQPLLENTKEKLSQFCHVPIGNILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLL 273 (561)
Q Consensus 197 tq~-sv~~l~s~--Gi~pd~iI~R~~~~l~~~~~~kisl~~~v~~~~Vi~~~dvdt~y~vp~~l~~qG~~~~i~~~l~l~ 273 (561)
||. -.+.++++ --..|+|++- .|+|++..+.--+ +.|-+..|||-. ...++.+.....-.+-
T Consensus 75 t~~~l~~~I~~lN~D~~V~GIlvq--lPLP~~i~~~~i~------~~I~p~KDVDGl-------~~~N~g~l~~~~~~~~ 139 (301)
T PRK14194 75 SQARLLALIAELNADPSVNGILLQ--LPLPAHIDEARVL------QAINPLKDVDGF-------HSENVGGLSQGRDVLT 139 (301)
T ss_pred CHHHHHHHHHHHcCCCCCCeEEEe--CCCCCCCCHHHHH------hccCchhccCcc-------ChhhhhHHhcCCCCCC
Confidence 122 22333333 2355677775 4566554332211 345556677754 1111111111111110
Q ss_pred ccCCCCChhHHHHHHhhhcCCCCceEEEEEeccCCCcccHHHHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcch
Q 008567 274 SIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDH 353 (561)
Q Consensus 274 ~~~~~~~~~~w~~l~~~~~~~~~~~~Iavvgky~~~~DaY~Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~ 353 (561)
+ .....--++.+.....-.+.+|++||.=+-+. .-+...|..+|+.+.+ |.....
T Consensus 140 ---P-cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG---~PmA~~L~~~gatVtv-----~~~~t~------------- 194 (301)
T PRK14194 140 ---P-CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVG---KPMAALLLQAHCSVTV-----VHSRST------------- 194 (301)
T ss_pred ---C-CcHHHHHHHHHHhCCCCCCCEEEEECCCCccH---HHHHHHHHHCCCEEEE-----ECCCCC-------------
Confidence 1 11112223444443334567999998532232 5578888889988766 322110
Q ss_pred hhHHHhccCCCeEEEcCC
Q 008567 354 AAAWETLRNAECVLVPGG 371 (561)
Q Consensus 354 ~~~~~~l~~~DGIilpGG 371 (561)
+..+..+++|-||..=|
T Consensus 195 -~l~e~~~~ADIVIsavg 211 (301)
T PRK14194 195 -DAKALCRQADIVVAAVG 211 (301)
T ss_pred -CHHHHHhcCCEEEEecC
Confidence 12355678897776543
No 461
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=38.82 E-value=57 Score=33.49 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=55.7
Q ss_pred HHHHHHHHcCceeeeeeeeEeecCCCcccccccCCCcchhhHHHhccCCCeEEEcCCCCCC-----chhHHHHHHHHHHH
Q 008567 315 SVVKALLHACIACSLKPSIDWIAASDLEDESAKLTPKDHAAAWETLRNAECVLVPGGFGDR-----GVGGMILAAKYARE 389 (561)
Q Consensus 315 Si~~aL~~ag~~~~v~v~i~~i~~~~l~~~~~~~d~~~~~~~~~~l~~~DGIilpGG~G~~-----~~~g~i~~ir~a~e 389 (561)
++++..+..|.+-.-.+++.|-+..+. .+....+.+++||++.||--.+ ......++|+.-..
T Consensus 71 ~y~rife~~gv~~v~ildir~R~~a~~------------s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r 138 (293)
T COG4242 71 NYIRIFEMMGVEEVQILDIRNREDASS------------SDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVR 138 (293)
T ss_pred chhhHHHHhccceeEEEeeecccccch------------HHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHh
Confidence 456778888887655566666553321 1234568899999999985433 23567778877777
Q ss_pred cCCCEEEEehhHHHHH
Q 008567 390 NNIPYLGICLGMQISV 405 (561)
Q Consensus 390 ~~iPvLGICLGmQLL~ 405 (561)
+++-+-|.-.|.-+|.
T Consensus 139 ~G~avgGTSAGAavM~ 154 (293)
T COG4242 139 RGIAVGGTSAGAAVMS 154 (293)
T ss_pred cCceecccccchhhcC
Confidence 8899999999988874
No 462
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=45 Score=35.41 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=38.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCcc
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFE 54 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~ 54 (561)
|-++|. |+-+-+||=.++-.|.+.++.+|+++..+-. |-++-.+
T Consensus 149 ~~V~vv-GTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT--------gqtgil~ 192 (339)
T COG3367 149 KVVLVV-GTDCAVGKRTTALELREAAREEGIKAGFVAT--------GQTGILI 192 (339)
T ss_pred cEEEEe-ccccccchhHHHHHHHHHHHHhCCccceEec--------CceeeEE
Confidence 345555 9999999999999999999999999999988 7777755
No 463
>PRK08339 short chain dehydrogenase; Provisional
Probab=38.78 E-value=33 Score=34.45 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|| |-.||+|+. +++.|.++|++|...
T Consensus 9 k~~lIt-Gas~gIG~a-----ia~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTT-ASSKGIGFG-----VARVLARAGADVILL 38 (263)
T ss_pred CEEEEe-CCCCcHHHH-----HHHHHHHCCCEEEEE
Confidence 689999 455888875 667788899998764
No 464
>PLN02686 cinnamoyl-CoA reductase
Probab=38.75 E-value=44 Score=35.65 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.6
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
+|-|+||||. |-+.+.|++.|.++|++|...
T Consensus 53 ~k~VLVTGat------GfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 53 ARLVCVTGGV------SFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred CCEEEEECCc------hHHHHHHHHHHHHCCCEEEEE
Confidence 3679999776 566788888888999998753
No 465
>PLN02913 dihydrofolate synthetase
Probab=38.42 E-value=29 Score=39.15 Aligned_cols=34 Identities=38% Similarity=0.450 Sum_probs=28.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.|-|+ || =|||-+++-|..+|++.||+|-.+-.
T Consensus 76 ~vIhVa-GT---NGKGSt~a~l~~iL~~aG~~vG~fTS 109 (510)
T PLN02913 76 KAVHVA-GT---KGKGSTAAFLSNILRAQGYSVGCYTS 109 (510)
T ss_pred cEEEEe-CC---CchHHHHHHHHHHHHhcCCCeEEECC
Confidence 456777 43 59999999999999999999988755
No 466
>PRK09186 flagellin modification protein A; Provisional
Probab=38.05 E-value=37 Score=33.34 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||| .+|+|+. +++.|.++|++|...
T Consensus 5 k~vlItGa-s~giG~~-----~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGA-GGLIGSA-----LVKAILEAGGIVIAA 34 (256)
T ss_pred CEEEEECC-CchHHHH-----HHHHHHHCCCEEEEE
Confidence 78999955 6888865 667778899998775
No 467
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=38.05 E-value=40 Score=35.59 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+|-+|| |..-|+||+ .++-|..||++|..+--
T Consensus 50 ~WAVVT-GaTDGIGKa-----yA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 50 SWAVVT-GATDGIGKA-----YARELAKRGFNVVLISR 81 (312)
T ss_pred CEEEEE-CCCCcchHH-----HHHHHHHcCCEEEEEeC
Confidence 356788 677888886 56778888888777644
No 468
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=38.03 E-value=34 Score=34.80 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=22.3
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHH-CCCeee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKA-CGLRVT 35 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~-~g~~v~ 35 (561)
|+.|-+|||..| ||+ +++++|++ .|+.|.
T Consensus 1 M~iIGlTGgIgS--GKS----tVs~~L~~~~G~~vi 30 (244)
T PTZ00451 1 MILIGLTGGIAC--GKS----TVSRILREEHHIEVI 30 (244)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHHcCCeEE
Confidence 678999999866 686 56677887 498874
No 469
>PRK12742 oxidoreductase; Provisional
Probab=38.02 E-value=37 Score=32.93 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.|+|| |..||+|+. +++.|.++|++|..
T Consensus 7 k~vlIt-GasggIG~~-----~a~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVL-GGSRGIGAA-----IVRRFVTDGANVRF 35 (237)
T ss_pred CEEEEE-CCCChHHHH-----HHHHHHHCCCEEEE
Confidence 689999 558899875 66788889998864
No 470
>PRK06114 short chain dehydrogenase; Provisional
Probab=37.90 E-value=34 Score=33.89 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++||| ..+|+|+ ++++.|.++|++|...
T Consensus 9 k~~lVtG-~s~gIG~-----~ia~~l~~~G~~v~~~ 38 (254)
T PRK06114 9 QVAFVTG-AGSGIGQ-----RIAIGLAQAGADVALF 38 (254)
T ss_pred CEEEEEC-CCchHHH-----HHHHHHHHCCCEEEEE
Confidence 6799995 5667775 5677788899988654
No 471
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=37.77 E-value=32 Score=34.25 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++|| |..||+|+.+ ++.|.++|++|..
T Consensus 9 k~vlIt-Gas~gIG~~i-----a~~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVIS-GGTRGIGKAI-----VYEFAQSGVNIAF 37 (260)
T ss_pred CEEEEe-CCCchHHHHH-----HHHHHHCCCEEEE
Confidence 789999 6669999874 4556678998754
No 472
>PRK07677 short chain dehydrogenase; Provisional
Probab=37.75 E-value=37 Score=33.54 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|.++||| ..+|+|+. +++.|.++|++|...=
T Consensus 2 k~~lItG-~s~giG~~-----ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITG-GSSGMGKA-----MAKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeC-CCChHHHH-----HHHHHHHCCCEEEEEe
Confidence 7789994 47888865 6677778999887653
No 473
>PRK06523 short chain dehydrogenase; Provisional
Probab=37.74 E-value=43 Score=33.09 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=25.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++|||| .+|+|+ ++++.|.++|++|..+-.
T Consensus 10 k~vlItGa-s~gIG~-----~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 10 KRALVTGG-TKGIGA-----ATVARLLEAGARVVTTAR 41 (260)
T ss_pred CEEEEECC-CCchhH-----HHHHHHHHCCCEEEEEeC
Confidence 67999954 578885 677788889999987655
No 474
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=37.72 E-value=39 Score=32.74 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=19.2
Q ss_pred CEEEEEeCCccCCCchHHHHHHHHHHHHHCCCee
Q 008567 1 MKYVLVTGGVVSGLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 1 ~k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+.|.||||. |-||+.++ ++|++.|+.|
T Consensus 2 ~~~i~ltG~~--gsGKst~~----~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGI--GSGKSTVA----NLFAELGAPV 29 (194)
T ss_pred CeEEEEECCC--CCCHHHHH----HHHHHcCCEE
Confidence 5679999985 55797554 5556667654
No 475
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=37.61 E-value=40 Score=35.16 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|-|+||||. |-+.+.|.+.|.++|++|..+-.
T Consensus 1 ~~vlVTGat------GfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGIT------GQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCC------CcHHHHHHHHHHHCCCEEEEEec
Confidence 568999765 55557888888889999987543
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=37.39 E-value=31 Score=29.30 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=23.7
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACG 31 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g 31 (561)
..++++|. +|.||..++..|+..+...+
T Consensus 3 ~~~~l~G~--~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGP--PGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECC--CCCcHHHHHHHHHhccCCCC
Confidence 35788876 89999999999999887766
No 477
>PRK04148 hypothetical protein; Provisional
Probab=37.36 E-value=53 Score=30.46 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCchHHHHHHHHHHHHHCCCeeeEeecCccccCCCCCCCCccccceEEcCCCcccccCCcccccccCCCCCCCCcccccc
Q 008567 13 GLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTKNNNITTGK 92 (561)
Q Consensus 13 ~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln~d~g~msp~~hgev~V~~dG~E~dldlg~yerf~~~~l~~~~~~tsGk 92 (561)
|+|-| .+++..|++.|+.|+.+-+||..--++ -+.|--+|.+|--+-|+ .
T Consensus 24 G~GfG---~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~----------------------~ 73 (134)
T PRK04148 24 GIGFY---FKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNL----------------------E 73 (134)
T ss_pred EecCC---HHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCH----------------------H
Confidence 45544 567788889999999999988742222 12355677777766533 2
Q ss_pred hhhHHhhhhhcCCCCCCeeEEecccHHHHHHHHHHhhccCCCCCCCCCCEEEEecCCcc
Q 008567 93 IYQSVLEKERKGDYLGKTVQVVPHITDAIKNWIESVAVIPVDGKEGPADVCVIELGGTV 151 (561)
Q Consensus 93 ~y~~vi~~er~g~y~g~tvq~iph~~~~i~~~i~~~~~~~~~~~~~~~d~~i~E~gGtv 151 (561)
+|+. + .----+-| ..|++..|.++|+ .-++|++|.=++|-.
T Consensus 74 ~y~~---------a-~liysirp--p~el~~~~~~la~------~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 74 IYKN---------A-KLIYSIRP--PRDLQPFILELAK------KINVPLIIKPLSGEE 114 (134)
T ss_pred HHhc---------C-CEEEEeCC--CHHHHHHHHHHHH------HcCCCEEEEcCCCCC
Confidence 2322 0 11123446 7899999999995 578999999998854
No 478
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=37.30 E-value=40 Score=38.36 Aligned_cols=32 Identities=44% Similarity=0.530 Sum_probs=29.9
Q ss_pred EEEEEeCCccC---CCchHHHHHHHHHHHHHCCCee
Q 008567 2 KYVLVTGGVVS---GLGKGVTASSVGVVLKACGLRV 34 (561)
Q Consensus 2 k~i~v~ggv~S---~~GKg~~~~s~~~ll~~~g~~v 34 (561)
|+|+|| .... |=||.+++..|+..|.+.|.+|
T Consensus 55 k~IlVT-s~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 55 KLVLVT-AITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred eEEEEE-ecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 899999 7666 9999999999999999999987
No 479
>PRK08116 hypothetical protein; Validated
Probab=37.26 E-value=54 Score=33.68 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=28.9
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
++++|. +|.||.-+|.+|+.-|..+|++|..+-.
T Consensus 117 l~l~G~--~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 117 LLLWGS--VGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 778875 6999999999999999998988876544
No 480
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=37.21 E-value=45 Score=34.42 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=27.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecCcccc
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLN 44 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~dpyln 44 (561)
|-|+| -||.||+.++..|..+|...|. +.+-.|.|..
T Consensus 2 igI~G--~sGsGKSTl~~~L~~ll~~~~~--~vi~~Dd~~~ 38 (273)
T cd02026 2 IGVAG--DSGCGKSTFLRRLTSLFGSDLV--TVICLDDYHS 38 (273)
T ss_pred EEEEC--CCCCCHHHHHHHHHHhhCCCce--EEEECccccc
Confidence 56776 4899999999999999976653 3444565544
No 481
>PRK00279 adk adenylate kinase; Reviewed
Probab=37.17 E-value=37 Score=33.23 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.1
Q ss_pred EEEeCCccCCCchHHHHHHHHHHH
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVL 27 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll 27 (561)
|+|+|+ .|.||+.+|..|+.-+
T Consensus 3 I~v~G~--pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGP--PGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh
Confidence 888977 8889999998887643
No 482
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.16 E-value=33 Score=35.56 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=28.8
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGICLGM 401 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGICLGm 401 (561)
.++|.+|.-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 41 ~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 41 QRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 46899999998765 5667777666789999999883
No 483
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=37.12 E-value=1.2e+02 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=21.2
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGI 397 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGI 397 (561)
.++||||+.+.... .....++.+.+.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 47999988653221 1223456677789998765
No 484
>PLN00198 anthocyanidin reductase; Provisional
Probab=37.11 E-value=54 Score=34.08 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=25.8
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeecC
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKID 40 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~d 40 (561)
|.|+||||. |-+.+.|.+.|.++|++|..+-.|
T Consensus 10 ~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 10 KTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECC
Confidence 679999876 566678888888999999765554
No 485
>PRK06940 short chain dehydrogenase; Provisional
Probab=37.10 E-value=31 Score=34.93 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|.++|||+ ||||+.+ ++.|. +|++|...
T Consensus 3 k~~lItGa--~gIG~~l-----a~~l~-~G~~Vv~~ 30 (275)
T PRK06940 3 EVVVVIGA--GGIGQAI-----ARRVG-AGKKVLLA 30 (275)
T ss_pred CEEEEECC--ChHHHHH-----HHHHh-CCCEEEEE
Confidence 67899975 7888764 44554 69988663
No 486
>PRK08643 acetoin reductase; Validated
Probab=37.03 E-value=41 Score=33.17 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++|| |..||+|. +|++.|.++|++|..+
T Consensus 3 k~~lIt-Gas~giG~-----~la~~l~~~G~~v~~~ 32 (256)
T PRK08643 3 KVALVT-GAGQGIGF-----AIAKRLVEDGFKVAIV 32 (256)
T ss_pred CEEEEE-CCCChHHH-----HHHHHHHHCCCEEEEE
Confidence 678999 56688885 5677777899988764
No 487
>PLN02924 thymidylate kinase
Probab=36.94 E-value=59 Score=32.40 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.5
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
+||.+.|. =|.||+..+..|...|..+|++|..+..
T Consensus 17 ~~IviEGi--DGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 17 ALIVLEGL--DRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 68999964 5789999999999999999999865543
No 488
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=36.88 E-value=42 Score=36.57 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=27.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|.|=|| |+ =|||-+++-|..+|++.|++|-.+-
T Consensus 50 ~~I~Vt-GT---NGKgSt~~~l~~iL~~~G~~vG~~t 82 (416)
T PRK10846 50 FVFTVA-GT---NGKGTTCRTLESILMAAGYRVGVYS 82 (416)
T ss_pred CEEEEE-CC---CChHHHHHHHHHHHHHcCCCceEEC
Confidence 456777 44 3999999999999999999997763
No 489
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=36.88 E-value=44 Score=36.79 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=25.6
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|+||||+ |.+.+.|.+.|.++|++|..+-
T Consensus 123 ILVTGat------GFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 123 IVVTGGA------GFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred EEEECCc------cHHHHHHHHHHHHCCCEEEEEe
Confidence 8999865 8899999999999999998764
No 490
>PRK08309 short chain dehydrogenase; Provisional
Probab=36.84 E-value=55 Score=31.45 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=20.2
Q ss_pred EEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 4 VLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 4 i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
++||||+ |+| .+ +++.|.++|++|...
T Consensus 3 vlVtGGt--G~g----g~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGGT--GML----KR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEECcC--HHH----HH-HHHHHHHCcCEEEEE
Confidence 7899884 544 23 778888899999864
No 491
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.71 E-value=38 Score=32.98 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|.++|||| .+++|+ ++++.|.++|++|..+=
T Consensus 8 ~~vlVtG~-sg~iG~-----~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGA-GRGIGR-----AVAIALAKEGVNVGLLA 38 (239)
T ss_pred CEEEEEcC-CchHHH-----HHHHHHHHCCCEEEEEe
Confidence 67999965 577775 46677778999987753
No 492
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=36.55 E-value=44 Score=35.10 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=26.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|-|+||||+ |-+-+.|++.|.++|++|..+-
T Consensus 16 ~~vlVtGat------GfiG~~lv~~L~~~g~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVA------GFIGSGLLEELLFLNQTVIGLD 46 (348)
T ss_pred CEEEEECCc------cHHHHHHHHHHHHCCCEEEEEe
Confidence 569999876 8889999999999999987653
No 493
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.41 E-value=20 Score=35.23 Aligned_cols=28 Identities=46% Similarity=0.788 Sum_probs=22.2
Q ss_pred ccCCCchHHHHHHHHHHHHHCC--CeeeEe
Q 008567 10 VVSGLGKGVTASSVGVVLKACG--LRVTSI 37 (561)
Q Consensus 10 v~S~~GKg~~~~s~~~ll~~~g--~~v~~~ 37 (561)
|..|=|||.++|++|..|++.| ++|-.+
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEE
Confidence 3468899999999999999865 566554
No 494
>PLN02583 cinnamoyl-CoA reductase
Probab=36.35 E-value=45 Score=34.22 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-|+||||. |-+.+.|.+.|.++||+|...
T Consensus 7 k~vlVTGat------G~IG~~lv~~Ll~~G~~V~~~ 36 (297)
T PLN02583 7 KSVCVMDAS------GYVGFWLVKRLLSRGYTVHAA 36 (297)
T ss_pred CEEEEECCC------CHHHHHHHHHHHhCCCEEEEE
Confidence 568999764 445566777788899999764
No 495
>PRK07062 short chain dehydrogenase; Provisional
Probab=36.21 E-value=39 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEeec
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIKI 39 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K~ 39 (561)
|.++|| |..||+|+. +++.|.++|++|...-.
T Consensus 9 k~~lIt-Gas~giG~~-----ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVT-GGSSGIGLA-----TVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEe-CCCchHHHH-----HHHHHHHCCCeEEEEeC
Confidence 679999 556888864 67777889999877543
No 496
>PLN02348 phosphoribulokinase
Probab=36.17 E-value=63 Score=35.33 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=32.7
Q ss_pred EEEEeCCccCCCchHHHHHHHHHHHHHCC---------------CeeeEeecCccccCCC
Q 008567 3 YVLVTGGVVSGLGKGVTASSVGVVLKACG---------------LRVTSIKIDPYLNTDA 47 (561)
Q Consensus 3 ~i~v~ggv~S~~GKg~~~~s~~~ll~~~g---------------~~v~~~K~dpyln~d~ 47 (561)
.|-|+|+ ||-||..+|..|..+|...+ -.++.+-+|=|--.|.
T Consensus 51 IIGIaG~--SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr 108 (395)
T PLN02348 51 VIGLAAD--SGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR 108 (395)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCCh
Confidence 4567765 78899999999999997653 4677888887754443
No 497
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.16 E-value=1.8e+02 Score=29.20 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=22.0
Q ss_pred cCCCeEEEcCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 008567 361 RNAECVLVPGGFGDRGVGGMILAAKYARENNIPYLGI 397 (561)
Q Consensus 361 ~~~DGIilpGG~G~~~~~g~i~~ir~a~e~~iPvLGI 397 (561)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~----~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGE----ALASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChh----hHHHHHHHHHHCCCCEEEE
Confidence 48999999763222 1234566677788998765
No 498
>PRK05867 short chain dehydrogenase; Provisional
Probab=36.13 E-value=36 Score=33.60 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeE
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTS 36 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~ 36 (561)
|.++|||| .||+|. ++++.|.++|++|..
T Consensus 10 k~vlVtGa-s~gIG~-----~ia~~l~~~G~~V~~ 38 (253)
T PRK05867 10 KRALITGA-STGIGK-----RVALAYVEAGAQVAI 38 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEE
Confidence 67999954 678775 567777889998865
No 499
>PRK06125 short chain dehydrogenase; Provisional
Probab=36.10 E-value=38 Score=33.58 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEee
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSIK 38 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~K 38 (561)
|.++||| ..+|+|+. +++.|.++|++|...=
T Consensus 8 k~vlItG-~~~giG~~-----ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 8 KRVLITG-ASKGIGAA-----AAEAFAAEGCHLHLVA 38 (259)
T ss_pred CEEEEeC-CCchHHHH-----HHHHHHHcCCEEEEEe
Confidence 6899995 47889876 5556667899887753
No 500
>PRK07806 short chain dehydrogenase; Provisional
Probab=36.08 E-value=41 Score=32.90 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCCchHHHHHHHHHHHHHCCCeeeEe
Q 008567 2 KYVLVTGGVVSGLGKGVTASSVGVVLKACGLRVTSI 37 (561)
Q Consensus 2 k~i~v~ggv~S~~GKg~~~~s~~~ll~~~g~~v~~~ 37 (561)
|-++|| |..||+|+.+ ++.|.++|++|...
T Consensus 7 k~vlIt-GasggiG~~l-----~~~l~~~G~~V~~~ 36 (248)
T PRK07806 7 KTALVT-GSSRGIGADT-----AKILAGAGAHVVVN 36 (248)
T ss_pred cEEEEE-CCCCcHHHHH-----HHHHHHCCCEEEEE
Confidence 779999 4568999765 45566789988753
Done!