BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008568
(561 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NZ07|NCLN_DANRE Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1
Length = 572
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 193/566 (34%), Positives = 296/566 (52%), Gaps = 66/566 (11%)
Query: 32 CDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISF 91
+AA VYR+ QYD+ G +GSR A LN A ++ LSR VM+ R + S+
Sbjct: 33 AEAAHEFSVYRMQQYDLQGQTYGSRNAILNTEARTVE---AEVLSRRCVMM--RLADFSY 87
Query: 92 VTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVY 151
+ + G ++ +LP +++V+ +ELE L+ + PVY
Sbjct: 88 EKYQKALRQSAGAVVIILPH---------NMSTLPQDIVQQ-FMELEPELLATETIVPVY 137
Query: 152 FAFENDEIDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNI 203
FA E++E+ ++ + + ++ + TAT G+++V A+ K V+ IT++
Sbjct: 138 FALEDEELLSIYTQTQISSSSQGSSSAAEVLLHTATANGFQMVTSGAQSKAVSDWAITSL 197
Query: 204 QGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYS 263
+G L G LPTI +VA YD+FG AP LS G+DSNGSGV LLE+ARLFS LYS
Sbjct: 198 EGRLTG----SGGEDLPTIVLVAHYDSFGVAPWLSYGADSNGSGVAILLELARLFSRLYS 253
Query: 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNE 318
+T YN+LF L+ GG +NY GT +WL + D L++++ + +CL+++G+ +N
Sbjct: 254 YKRTHAGYNLLFFLSGGGKFNYQGTKRWLEDNLDHTDASLLQDNVAFVLCLDTLGNSDN- 312
Query: 319 LWIHVSKPPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISNPRVAWEHEQFSRLR 375
L +HVSKPP+ + E T VA + K + HKKIN+++ +AWEHE+F R
Sbjct: 313 LHLHVSKPPKEGSPQYTLLKELETVVAHQHPDLKFAMVHKKINLADDTLAWEHERFGIRR 372
Query: 376 VTAATLSEL---------------SAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESL 420
+ A TLS L S +P LE G H VD R+ K++AE+L
Sbjct: 373 LPAFTLSHLESHRSPARHSIMDMRSVSPS-LEGAGEATTGPH-VDLGKLSRNTKVIAETL 430
Query: 421 ARHIYGYQGK----NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALK 476
AR IY K +++IF + + V + S +D L+ PR A + K+ I L+
Sbjct: 431 ARVIYNLTEKGVTGDLEIFTEQ--MQVQEDQLASLVDWLTAQPRAAQLLDKDSSIINTLE 488
Query: 477 KELADHTDEV---IMQHEVLDGMFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYLIVLF 533
+L+ + +V +++ + D F FYD K ++N Y+V FDLLL + + SYL VL
Sbjct: 489 HQLSRYLKDVKRHLVRADKRDPEFVFYDQLKQTMNAYRVKPAIFDLLLAVCIASYLGVL- 547
Query: 534 SFLVITTRGLDDLISLFRRPPSRKVK 559
+L I GL L RR + +VK
Sbjct: 548 -YLAIQNFGL--LYGFLRRVTAPRVK 570
>sp|Q5XIA1|NCLN_RAT Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1
Length = 563
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/517 (34%), Positives = 276/517 (53%), Gaps = 55/517 (10%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVVMIPVRELNISFVTEYVSR 98
VYR+ QYD+ G P+G+R A LN A ++ AD LSR V++ R L+ S+ +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTV----DADVLSRRCVLM--RLLDFSYEHYQKAL 101
Query: 99 KHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDE 158
+ G ++ +LP ++VV+ +E+E ++ + PVYFA E++
Sbjct: 102 RQSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETVVPVYFAVEDEA 151
Query: 159 IDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGL 210
+ ++ + + A+ A TAT G+++V A+ + V+ IT+++G L GL
Sbjct: 152 LLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGL 211
Query: 211 KADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270
+ LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+ARLFS LY+ +T
Sbjct: 212 GGE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAA 267
Query: 271 YNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSK 325
YN+LF + GG +NY GT +WL S D L++++ + +CL++VG + L +HVSK
Sbjct: 268 YNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSK 326
Query: 326 PPENAYIKQIFEGFTNVAEELGF---KVGLKHKKINISNPRVAWEHEQFSRLRVTAATLS 382
PP ++ +F + F + HKKIN+++ +AWEHE+F+ R+ A TLS
Sbjct: 327 PPREGTLQHVFLRELEMVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLS 386
Query: 383 ELS---AAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIF 435
L A P ++D R VD + R+ +++AE+L R IY K ++ +F
Sbjct: 387 HLENHRAGPR-----SSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVF 441
Query: 436 ADNSSLAVNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKELADHTDEVIMQH---EV 492
+ + V I S +D L+ PR A + K+ F+ L+ L+ + +V H +
Sbjct: 442 TEQ--MQVQQEQIDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADK 499
Query: 493 LDGMFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYL 529
D F FYD K +N Y+V FDLLL L +G+YL
Sbjct: 500 RDPEFVFYDQLKQVMNAYRVKPAIFDLLLALCIGAYL 536
>sp|Q8VCM8|NCLN_MOUSE Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2
Length = 563
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 178/517 (34%), Positives = 277/517 (53%), Gaps = 55/517 (10%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVVMIPVRELNISFVTEYVSR 98
VYR+ QYD+ G P+G+R A LN A ++ AD LSR V++ R L+ S+ +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTV----DADVLSRRCVLM--RLLDFSYEHYQKAL 101
Query: 99 KHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDE 158
+ G ++ +LP ++VV+ +E+E ++ + PVYFA E++
Sbjct: 102 RQSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETVVPVYFAVEDEA 151
Query: 159 IDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGL 210
+ ++ + + A+ A TAT G+++V A+ + V+ IT+++G L GL
Sbjct: 152 LLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGL 211
Query: 211 KADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270
+ LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+ARLFS LY+ +T
Sbjct: 212 GGE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAA 267
Query: 271 YNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSK 325
YN+LF + GG +NY GT +WL S D L++++ + +CL++VG + L +HVSK
Sbjct: 268 YNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSK 326
Query: 326 PPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLS 382
PP ++ F E T A + + HKKIN+++ +AWEHE+F+ R+ A TLS
Sbjct: 327 PPREGTLQHAFLRELETVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLS 386
Query: 383 ELS---AAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIF 435
L A P ++D R VD + R+ +++AE+L R IY K ++ +F
Sbjct: 387 HLESHRAGPR-----SSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVF 441
Query: 436 ADNSSLAVNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKELADHTDEVIMQH---EV 492
+ + V I S +D L+ PR A + K+ F+ L+ L+ + +V H +
Sbjct: 442 TEQ--MQVQEEQIDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADK 499
Query: 493 LDGMFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYL 529
D F FYD K +N Y+V FDLLL L +G+YL
Sbjct: 500 RDPEFVFYDQLKQVMNAYRVKPAIFDLLLALCIGAYL 536
>sp|Q969V3|NCLN_HUMAN Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2
Length = 563
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 169/513 (32%), Positives = 273/513 (53%), Gaps = 47/513 (9%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
VYR+ QYD+ G P+G+R A LN A ++ LSR V++ R L+ S+ + +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTM---AAEVLSRRCVLM--RLLDFSYEQYQKALR 102
Query: 100 HPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEI 159
G ++ +LP ++VV+ +E+E ++ + PVYFA E++ +
Sbjct: 103 QSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETAVPVYFAVEDEAL 152
Query: 160 DAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLK 211
++ + A+ A TAT G+++V + K V+ I +++G L GL
Sbjct: 153 LSIYKQTQAASASQGSASAAEVLLRTATANGFQMVTSGVQSKAVSDWLIASVEGRLTGLG 212
Query: 212 ADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRY 271
+ LPTI IVA YD FG AP LS+G+DSNGSGV LLE+ARLFS LY+ +T Y
Sbjct: 213 GE----DLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAY 268
Query: 272 NILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSKP 326
N+LF + GG +NY GT +WL + D L++++ + +CL++VG + L +HVSKP
Sbjct: 269 NLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGR-GSSLHLHVSKP 327
Query: 327 PENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSE 383
P ++ F E T A + + + HK+IN++ +AWEHE+F+ R+ A TLS
Sbjct: 328 PREGTLQHAFLRELETVAAHQFPEVRFSMVHKRINLAEDVLAWEHERFAIRRLPAFTLSH 387
Query: 384 LSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGK----NIQIFADNS 439
L + + S+ ++D R VD + R+ +++AE+L R IY K ++ +F +
Sbjct: 388 LESHRDGQRSS--IMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQ- 444
Query: 440 SLAVNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKELADHTDEVIMQH---EVLDGM 496
+ + + S +D L+ PR A + K+ F+ L+ L+ + +V H + D
Sbjct: 445 -MQIQQEQLDSVMDWLTNQPRAAQLVDKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPE 503
Query: 497 FTFYDSTKASLNIYQVASVTFDLLLLLVLGSYL 529
F FYD K +N Y+V FDLLL + + +YL
Sbjct: 504 FVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYL 536
>sp|Q5ZJH2|NCLN_CHICK Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1
Length = 562
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 173/541 (31%), Positives = 277/541 (51%), Gaps = 59/541 (10%)
Query: 22 VFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVV 80
V +L+ +AA VYR+ QY++ G P+G+R A LN A ++ AD LSR V
Sbjct: 29 VLLLLGPPPAAEAAHESTVYRMQQYELGGQPYGTRSAVLNTEARTVE----ADVLSRRCV 84
Query: 81 MIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKL 140
M+ R ++ S+ + + G ++ +LP ++VVK +E+E
Sbjct: 85 MM--RLVDFSYEQYQKALRQSAGAVVIILPRSI---------SSVPQDVVKQ-FMEIEPE 132
Query: 141 LVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEP 192
++ + PVYFA E+DE+ ++ + + A+ A TAT G+++V A+
Sbjct: 133 MLAMETIVPVYFAVEDDELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQS 192
Query: 193 KKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALL 252
K + I +++G L GL + LPT+ IVA YD+FG AP LS G+DSNGSGV LL
Sbjct: 193 KAIHDWLIPSVEGRLTGLGGE----DLPTVVIVAHYDSFGVAPWLSHGADSNGSGVSVLL 248
Query: 253 EVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAI 307
E+ARLFS LY+ +T YN+LF + GG +NY GT +WL + D L++++ + +
Sbjct: 249 ELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVL 308
Query: 308 CLNSVGSWNNELWIHVSKPPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISNPRV 364
CL+++G N L +HVSKPP+ ++ F E VA + K + HKKIN++ +
Sbjct: 309 CLDTLGR-GNSLHLHVSKPPKEGTLQHAFLRELEMVVASQFPEVKFSMVHKKINLAEDIL 367
Query: 365 AWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHI 424
AWEHE+F+ R+ A T+S L + + L ++ ++D R VD K + + H
Sbjct: 368 AWEHERFAIRRLPAFTISHLESHRDSLRNS--IMDRRSQVD-------TKALTQEYQDHC 418
Query: 425 YGYQGKNIQIFADNSSLA--------VNPSYIRSWLD-LLSQTPRVAPFISKNDPFIMAL 475
G+ ++Q + S+ +P D L Q+ + A I K+ F+ L
Sbjct: 419 GGFDEGHLQPNREGSTCRSADLHGSDADPGGAARISDGLAEQSAQAAQLIDKDSTFLSTL 478
Query: 476 KKELADHTDEVIMQH---EVLDGMFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYLIVL 532
+ + + +V H + D F FYD K +N Y+V FDLLL + + +YL V
Sbjct: 479 EYYMGRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIAAYLGVA 538
Query: 533 F 533
+
Sbjct: 539 Y 539
>sp|Q90997|TFR1_CHICK Transferrin receptor protein 1 OS=Gallus gallus GN=TFRC PE=2 SV=2
Length = 776
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFS 259
I NI G +QG + + I A D++G A + G+G LLE+AR+ S
Sbjct: 399 ILNIFGAIQGFEEPDR-----YVVIGAQRDSWGPGVAKA------GTGTAILLELARVIS 447
Query: 260 LLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311
+ N + R +I+F S G Y G +WL + L I L++
Sbjct: 448 DIVKNEGYKPRRSIIFASWSAGDYGAVGATEWLEGYSAMLHAKAFTYISLDA 499
>sp|Q9UP52|TFR2_HUMAN Transferrin receptor protein 2 OS=Homo sapiens GN=TFR2 PE=1 SV=1
Length = 801
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 197 SPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVAR 256
S I NI G ++G +++ D + I A D +G G+ + G LLE+ R
Sbjct: 407 STPINNIFGCIEG-RSEPDH----YVVIGAQRDAWGP------GAAKSAVGTAILLELVR 455
Query: 257 LFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295
FS + SN R R ++LF GG + G+ +WL +
Sbjct: 456 TFSSMVSN-GFRPRRSLLFISWDGGDFGSVGSTEWLEGY 493
>sp|A4WCV7|MNMC_ENT38 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Enterobacter sp. (strain 638) GN=mnmC
PE=3 SV=2
Length = 666
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 31 LCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAG--SLHFSPGADLSRTVVMIPVRELN 88
LC A V L Q V +G L SLNH G L F+ GAD + V++
Sbjct: 406 LCPAELTAAVINLAQSRGLAVHYGYHLDSLNHQQGDWQLRFNNGADAQHSSVVLANGHRI 465
Query: 89 ISFVTEYVSRKHPLGGMLFLLPEIFRLE 116
F +P+GG + +P +LE
Sbjct: 466 SDFSQTEKLPVYPVGGQVSHIPTTPQLE 493
>sp|P25152|BSAP_BACSU Aminopeptidase YwaD OS=Bacillus subtilis (strain 168) GN=ywaD PE=1
SV=2
Length = 455
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 31/191 (16%)
Query: 175 PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAI---------- 224
P T G K+ IP+ KK +T + LKA + I I
Sbjct: 184 PMTPNLSGNKVGIPVVGIKKEDGEALTQQKEATLKLKAFTNQTSQNIIGIKKPKNIKHPD 243
Query: 225 ----VASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280
A YD+ +P G++ NGSG +LE+AR+ + S+ + R I FG
Sbjct: 244 IVYVTAHYDSVPFSP----GANDNGSGTSVMLEMARVLKSVPSDKEIR---FIAFGAEEL 296
Query: 281 GPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG-SWN--NELWIHVSKPPENAYIKQIFE 337
G G+ ++ ++ + + L+ VG SW +EL+++ N ++E
Sbjct: 297 GLL---GSSHYVDHLSEKELKRSEVNFNLDMVGTSWEKASELYVNTLDGQSN----YVWE 349
Query: 338 GFTNVAEELGF 348
AE++GF
Sbjct: 350 SSRTAAEKIGF 360
>sp|Q2FSF9|DP2L_METHJ DNA polymerase II large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=polC PE=3 SV=1
Length = 1286
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 373 RLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHIYGYQGKNI 432
R R ++ +S + E+L S G +++ H + +++ S + R ++
Sbjct: 391 RARELSSQVSHIIDVGEILISYGEFMENNHVLVPSAYCESWWRLEGGTTRP----ADEDE 446
Query: 433 QIFADNSSLAVNPSYIRSWLDLLSQTPR-VAPFISK-----NDPFIMALKKELADHTDEV 486
I S L ++P Y+ W DL R +A FI K + I+ L + ++ + V
Sbjct: 447 AILQCESGLYLHPDYLYLWDDLKPAEIRSLAEFIHKHGTLADKTLILPLDPTIKEYLERV 506
Query: 487 IMQHEVLDGMF 497
+ +H+V +GM
Sbjct: 507 LCEHQVREGMI 517
>sp|Q9JKX3|TFR2_MOUSE Transferrin receptor protein 2 OS=Mus musculus GN=Tfr2 PE=2 SV=2
Length = 798
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 194 KVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLE 253
+V++P I+NI ++G A+ D + I A D +G G+ + G LLE
Sbjct: 400 RVSTP-ISNIFACIEGF-AEPDH----YVVIGAQRDAWGP------GAAKSAVGTAILLE 447
Query: 254 VARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295
+ R FS + SN R R ++LF GG + G +WL +
Sbjct: 448 LVRTFSSMVSN-GFRPRRSLLFISWDGGDFGSVGATEWLEGY 488
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,803,081
Number of Sequences: 539616
Number of extensions: 9137418
Number of successful extensions: 21760
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 21718
Number of HSP's gapped (non-prelim): 20
length of query: 561
length of database: 191,569,459
effective HSP length: 123
effective length of query: 438
effective length of database: 125,196,691
effective search space: 54836150658
effective search space used: 54836150658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)