Query 008568
Match_columns 561
No_of_seqs 264 out of 1310
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2526 Predicted aminopeptida 100.0 2E-128 5E-133 993.9 39.3 532 10-561 13-555 (555)
2 PF05450 Nicastrin: Nicastrin; 100.0 1.4E-29 3E-34 252.8 18.0 204 220-425 1-234 (234)
3 PF04389 Peptidase_M28: Peptid 100.0 1.2E-28 2.5E-33 235.0 15.1 175 221-410 2-179 (179)
4 PRK10199 alkaline phosphatase 99.9 5.3E-25 1.2E-29 230.0 21.4 216 198-428 95-342 (346)
5 KOG2657 Transmembrane glycopro 99.9 3.6E-21 7.8E-26 204.2 19.2 293 131-429 59-411 (596)
6 COG2234 Iap Predicted aminopep 99.8 1.4E-18 3.1E-23 187.9 14.8 194 198-411 182-381 (435)
7 KOG2195 Transferrin receptor a 99.8 5.4E-18 1.2E-22 191.0 17.5 209 195-429 333-545 (702)
8 KOG2194 Aminopeptidases of the 99.5 4.2E-14 9E-19 159.9 12.4 188 195-410 123-314 (834)
9 KOG3946 Glutaminyl cyclase [Po 99.3 1.3E-11 2.9E-16 123.8 12.3 211 199-424 104-336 (338)
10 COG4882 Predicted aminopeptida 99.2 1.2E-09 2.6E-14 113.0 20.6 279 54-424 69-358 (486)
11 PF09940 DUF2172: Domain of un 99.1 1.1E-08 2.3E-13 107.5 21.3 202 181-423 102-305 (386)
12 TIGR03176 AllC allantoate amid 98.5 3.7E-07 8E-12 98.8 8.9 79 201-293 56-139 (406)
13 TIGR01879 hydantase amidase, h 98.4 6.7E-07 1.4E-11 96.4 9.3 80 201-294 54-138 (401)
14 PRK06133 glutamate carboxypept 98.4 1.3E-06 2.7E-11 94.6 11.3 97 200-311 87-196 (410)
15 PF01546 Peptidase_M20: Peptid 98.4 7E-06 1.5E-10 78.0 14.6 168 223-421 1-188 (189)
16 PRK12890 allantoate amidohydro 98.4 1.2E-06 2.6E-11 94.6 9.4 81 201-295 61-146 (414)
17 TIGR01910 DapE-ArgE acetylorni 98.3 1.8E-06 3.8E-11 91.9 9.2 99 201-312 52-167 (375)
18 PRK13590 putative bifunctional 98.3 1.9E-06 4.1E-11 97.7 9.1 79 200-292 237-320 (591)
19 PRK13799 unknown domain/N-carb 98.3 2.3E-06 4.9E-11 97.1 8.9 79 200-292 237-320 (591)
20 PRK08596 acetylornithine deace 98.2 4.5E-06 9.8E-11 90.5 10.5 99 200-311 62-177 (421)
21 PRK09133 hypothetical protein; 98.2 6.6E-06 1.4E-10 90.5 10.4 98 199-308 87-201 (472)
22 PRK13381 peptidase T; Provisio 98.2 9.8E-06 2.1E-10 87.3 11.1 84 201-294 55-184 (404)
23 PF04114 Gaa1: Gaa1-like, GPI 98.2 0.00011 2.5E-09 81.8 19.6 196 199-430 2-231 (504)
24 PRK12891 allantoate amidohydro 98.1 7E-06 1.5E-10 88.9 9.0 78 201-292 63-145 (414)
25 TIGR01883 PepT-like peptidase 98.1 7.2E-06 1.6E-10 86.6 8.8 84 200-294 49-146 (361)
26 PRK13983 diaminopimelate amino 98.1 1.3E-05 2.8E-10 85.6 10.6 100 200-310 63-180 (400)
27 PRK07906 hypothetical protein; 98.1 8.8E-06 1.9E-10 88.2 9.2 87 200-295 51-154 (426)
28 PRK09104 hypothetical protein; 98.1 1.8E-05 3.9E-10 86.9 10.3 100 200-310 68-189 (464)
29 TIGR01880 Ac-peptdase-euk N-ac 98.0 2.2E-05 4.8E-10 84.4 10.7 99 200-310 57-173 (400)
30 PRK05469 peptidase T; Provisio 98.0 2.3E-05 5E-10 84.6 10.8 86 200-294 55-186 (408)
31 PRK07473 carboxypeptidase; Pro 98.0 2.7E-05 5.9E-10 83.4 11.1 99 201-312 62-173 (376)
32 PRK09290 allantoate amidohydro 98.0 1.8E-05 3.8E-10 85.7 9.4 81 201-295 60-145 (413)
33 PRK08588 succinyl-diaminopimel 98.0 3E-05 6.5E-10 82.5 10.5 97 200-311 48-161 (377)
34 PRK12893 allantoate amidohydro 98.0 2E-05 4.4E-10 84.9 9.0 80 201-294 63-147 (412)
35 TIGR01882 peptidase-T peptidas 98.0 3.1E-05 6.6E-10 83.9 10.3 84 200-293 57-187 (410)
36 COG4310 Uncharacterized protei 98.0 8.7E-05 1.9E-09 76.4 12.6 172 219-423 178-353 (435)
37 PRK12892 allantoate amidohydro 98.0 2.6E-05 5.6E-10 84.1 9.2 79 201-294 62-145 (412)
38 PRK07338 hypothetical protein; 97.9 4.5E-05 9.7E-10 81.9 10.5 97 200-311 80-189 (402)
39 PRK13013 succinyl-diaminopimel 97.9 5.3E-05 1.1E-09 82.0 10.6 101 200-310 71-186 (427)
40 PRK06915 acetylornithine deace 97.9 4.4E-05 9.6E-10 82.6 9.5 86 199-294 79-181 (422)
41 TIGR01892 AcOrn-deacetyl acety 97.9 6.3E-05 1.4E-09 79.3 10.1 83 200-295 46-144 (364)
42 TIGR01893 aa-his-dipept aminoa 97.9 4.6E-05 9.9E-10 84.2 9.2 96 201-312 47-165 (477)
43 TIGR03107 glu_aminopep glutamy 97.9 0.00029 6.2E-09 75.1 14.8 152 240-422 175-340 (350)
44 PRK08201 hypothetical protein; 97.8 6.6E-05 1.4E-09 82.3 9.9 99 200-310 66-181 (456)
45 PRK07907 hypothetical protein; 97.8 8.5E-05 1.9E-09 81.3 10.7 97 200-311 70-183 (449)
46 TIGR01891 amidohydrolases amid 97.8 9.5E-05 2.1E-09 78.5 10.7 95 200-311 43-150 (363)
47 PRK08262 hypothetical protein; 97.8 8.8E-05 1.9E-09 82.0 10.3 86 201-295 98-202 (486)
48 PRK08652 acetylornithine deace 97.8 6.1E-05 1.3E-09 78.9 8.5 81 219-311 55-143 (347)
49 PRK04443 acetyl-lysine deacety 97.7 0.00012 2.6E-09 77.3 9.4 90 201-310 49-146 (348)
50 PRK06837 acetylornithine deace 97.7 0.00013 2.9E-09 79.2 9.9 87 199-294 82-185 (427)
51 KOG2275 Aminoacylase ACY1 and 97.7 0.0006 1.3E-08 73.0 13.6 87 199-294 73-177 (420)
52 PRK07079 hypothetical protein; 97.7 0.00021 4.7E-09 78.6 10.3 100 200-310 72-189 (469)
53 PRK13009 succinyl-diaminopimel 97.6 0.00021 4.5E-09 75.9 9.8 98 200-310 47-162 (375)
54 PRK13004 peptidase; Reviewed 97.6 0.00026 5.6E-09 76.2 10.3 95 201-311 59-171 (399)
55 PRK07522 acetylornithine deace 97.6 0.00017 3.7E-09 76.8 8.8 83 200-295 52-150 (385)
56 PRK13007 succinyl-diaminopimel 97.6 0.00028 6.2E-09 74.2 10.3 94 201-311 50-155 (352)
57 PF05343 Peptidase_M42: M42 gl 97.6 0.00077 1.7E-08 70.2 13.3 143 241-412 132-289 (292)
58 PRK05111 acetylornithine deace 97.6 0.00018 3.9E-09 76.7 8.6 81 200-294 60-156 (383)
59 PRK08651 succinyl-diaminopimel 97.6 0.00026 5.6E-09 75.7 9.7 95 200-313 63-173 (394)
60 PRK09864 putative peptidase; P 97.6 0.001 2.2E-08 71.1 13.9 153 240-421 172-339 (356)
61 PRK06446 hypothetical protein; 97.6 0.00022 4.8E-09 77.8 8.8 84 200-295 50-150 (436)
62 TIGR01902 dapE-lys-deAc N-acet 97.5 0.00034 7.3E-09 73.4 9.1 91 201-313 40-138 (336)
63 PRK06156 hypothetical protein; 97.5 0.00056 1.2E-08 76.5 11.0 84 219-311 109-213 (520)
64 PLN02280 IAA-amino acid hydrol 97.5 0.00052 1.1E-08 76.1 10.5 94 200-309 140-244 (478)
65 TIGR01900 dapE-gram_pos succin 97.5 0.00057 1.2E-08 73.1 10.3 98 202-310 42-168 (373)
66 PLN02693 IAA-amino acid hydrol 97.4 0.00068 1.5E-08 74.4 10.6 82 200-294 90-182 (437)
67 TIGR01886 dipeptidase dipeptid 97.4 0.00033 7.2E-09 77.3 8.2 73 219-295 78-165 (466)
68 PRK09961 exoaminopeptidase; Pr 97.4 0.0024 5.1E-08 68.0 13.8 152 239-420 162-330 (344)
69 PRK08554 peptidase; Reviewed 97.4 0.00087 1.9E-08 73.5 10.6 98 201-313 53-166 (438)
70 PRK07318 dipeptidase PepV; Rev 97.3 0.00053 1.1E-08 75.5 8.2 84 202-295 68-166 (466)
71 PRK00466 acetyl-lysine deacety 97.3 0.00063 1.4E-08 71.8 8.2 80 220-312 61-148 (346)
72 PRK07205 hypothetical protein; 97.3 0.00082 1.8E-08 73.5 9.3 72 219-294 75-163 (444)
73 COG0624 ArgE Acetylornithine d 97.3 0.0011 2.5E-08 71.4 10.0 103 199-311 61-180 (409)
74 PRK15026 aminoacyl-histidine d 97.2 0.0014 3E-08 72.9 9.9 96 201-312 53-171 (485)
75 TIGR01246 dapE_proteo succinyl 97.1 0.0017 3.8E-08 68.8 9.4 82 201-294 45-144 (370)
76 TIGR03106 trio_M42_hydro hydro 97.1 0.0049 1.1E-07 65.6 12.5 151 238-420 179-339 (343)
77 TIGR01887 dipeptidaselike dipe 97.1 0.0016 3.4E-08 71.7 8.5 72 219-294 67-153 (447)
78 COG1363 FrvX Cellulase M and r 97.1 0.0058 1.3E-07 65.2 12.2 155 239-422 176-345 (355)
79 TIGR03526 selenium_YgeY putati 96.9 0.0046 1E-07 66.5 10.3 82 201-294 57-156 (395)
80 TIGR03320 ygeY M20/DapE family 96.7 0.0069 1.5E-07 65.1 9.9 82 201-294 57-156 (395)
81 KOG3566 Glycosylphosphatidylin 96.5 0.19 4E-06 56.3 18.8 163 196-381 116-317 (617)
82 PRK08737 acetylornithine deace 96.4 0.009 1.9E-07 63.9 7.8 74 200-294 54-143 (364)
83 COG4187 RocB Arginine degradat 95.8 0.058 1.3E-06 58.5 10.3 108 197-315 61-210 (553)
84 COG1473 AbgB Metal-dependent a 91.6 1.2 2.7E-05 48.4 10.5 95 201-309 57-162 (392)
85 KOG2276 Metalloexopeptidases [ 86.5 2.4 5.2E-05 46.0 7.8 86 218-307 90-192 (473)
86 PTZ00371 aspartyl aminopeptida 63.2 71 0.0015 35.7 11.5 165 238-415 246-450 (465)
87 TIGR03106 trio_M42_hydro hydro 60.5 8.5 0.00019 41.1 3.6 29 199-233 44-72 (343)
88 PRK02813 putative aminopeptida 60.0 82 0.0018 34.9 11.2 155 238-411 229-419 (428)
89 PF05343 Peptidase_M42: M42 gl 59.9 6.9 0.00015 40.9 2.7 26 202-233 2-27 (292)
90 PRK09961 exoaminopeptidase; Pr 56.0 9.7 0.00021 40.7 3.1 28 199-233 41-68 (344)
91 COG1363 FrvX Cellulase M and r 50.3 13 0.00028 40.1 2.9 29 199-233 43-71 (355)
92 TIGR03107 glu_aminopep glutamy 48.8 14 0.00031 39.6 3.0 30 199-233 39-68 (350)
93 PRK02256 putative aminopeptida 43.6 31 0.00068 38.5 4.7 156 238-409 255-451 (462)
94 COG2195 PepD Di- and tripeptid 37.3 30 0.00065 38.1 3.3 63 239-310 141-203 (414)
95 PRK08652 acetylornithine deace 29.2 1.5E+02 0.0033 30.7 7.0 76 334-424 270-345 (347)
96 PRK09864 putative peptidase; P 28.5 48 0.001 35.8 3.0 27 199-233 41-67 (356)
No 1
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-128 Score=993.92 Aligned_cols=532 Identities=43% Similarity=0.651 Sum_probs=496.8
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccceeEEEEEEeeccCCCCccccccccccccccccccCCCCcccceEEEEeccCCCH
Q 008568 10 DMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNI 89 (561)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ef~vyRm~qyd~~g~~~Gsr~a~~~~ea~s~~~~~~~~~~R~~vl~~~~d~~~ 89 (561)
+.|+.|+.++++++++++|+..+++++||+||||+|||++|+|||||++.+|+||+++.+ ..+|+|+++||.|+..
T Consensus 13 ~~~~~m~~~la~~l~~~~~~~~~daate~~vyrl~qydisg~pyg~rn~~ln~~A~sl~~----~~s~r~~v~r~ld~l~ 88 (555)
T KOG2526|consen 13 ALLFYMTLMLAICLVNGSQQVGEDAATEFHVYRLHQYDISGNPYGCRNYRLNYEAVSLGA----RTSRRTMVTRWLDLLT 88 (555)
T ss_pred hHHHHHHHHHHHHHhhchhhhhhhhcccceeeeeeeeeecCccccccccccchHHHHHHH----hhhhheehhhhhhhhH
Confidence 368899999999999999999999999999999999999999999999999999999875 4489999999999986
Q ss_pred HHHHHHHhhcCCcceEEEEcCCccccCCCCCCCCcchhhHHHhHHHHHHHHhhccCCCCcEEEeechhhHHHHHHHHh--
Q 008568 90 SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVK-- 167 (561)
Q Consensus 90 ~~~~~~~~~~~~~~gvliilP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvyf~~~~~~~~~i~~~~~-- 167 (561)
....+ ..||++|||||+||+++..++++ .++.++.||+.||+.++++||||+++|+++..|++++.
T Consensus 89 ~q~~d--~~~qs~G~vlI~LP~nl~~lnd~----------~r~l~~~LE~~ll~~~tavpVYfApenedl~sil~d~~~~ 156 (555)
T KOG2526|consen 89 TQVDD--MWAQSTGAVLIFLPDNLDELNDI----------DRKLFIDLEAKLLSAKTAVPVYFAPENEDLVSILHDVNTR 156 (555)
T ss_pred HHHHH--HHHhccCcEEEEechhhhhCCHH----------HHHHHHHHHHHHhcCCCCcceEecccchHHHHHHHhhccc
Confidence 55444 45678999999999999999998 68899999999999999999999999999999999963
Q ss_pred hccCCCC----CCceeecceEEEEecCCCcccCCCCcceEEEEec-CCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCcc
Q 008568 168 KNDATGQ----PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQ-GLKADGDANQLPTIAIVASYDTFGAAPALSVGSD 242 (561)
Q Consensus 168 ~~~~~~~----~~s~~~~~~~~~~s~~~~~~~~~~~~~NV~g~L~-G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAd 242 (561)
++++.|+ ..|+++|+|+|++++.+|++++++++.||+|+|. |.+.++|..+.|+|+|+||||++|++|++++|||
T Consensus 157 ~~dapg~~~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgAD 236 (555)
T KOG2526|consen 157 SEDAPGALQHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGAD 236 (555)
T ss_pred cccCcchHHHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCC
Confidence 3333342 3578999999999999999999999999999999 8887788889999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEE
Q 008568 243 SNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIH 322 (561)
Q Consensus 243 DNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lh 322 (561)
+||||+++||||||+||++|++++++++||++|++++|+.+||+|+|+|++.-+....+||+++||||+||++.+.+|||
T Consensus 237 SNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mH 316 (555)
T KOG2526|consen 237 SNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMH 316 (555)
T ss_pred CCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEE
Confidence 99999999999999999999999999999999999999999999999999964444567999999999999988899999
Q ss_pred eccCC-chhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccchhcCCCeEEEEeccCCCCCccccCCCCC-CC
Q 008568 323 VSKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLL-DS 400 (561)
Q Consensus 323 vs~~p-~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~-Dt 400 (561)
+|||| +++.+.+|++.++.+|.++++.+.++|||||++++.++||||+|+++++||+|||+.++|+|+. |++|+ |+
T Consensus 317 vsKpP~dnt~i~qffr~l~svAek~~~~v~~khkkInla~s~lAWEHErFsikR~pAfTLS~l~Sprdp~--rnsi~~d~ 394 (555)
T KOG2526|consen 317 VSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHKKINLASSRLAWEHERFSIKRMPAFTLSTLPSPRDPA--RNSILLDL 394 (555)
T ss_pred ccCCCCcchHHHHHHHHhhhhchhcceEEEEEeeeEeeccchhhhhhhhhhhhcccceeeccCCCCcchh--hccccccc
Confidence 99999 5788999999999999999999999999999999999999999999999999999999999995 45888 99
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhccCC--ceEEeccCCccccChhhHHHHHHhhhcCCCCCccCCCCchHHHHHHHH
Q 008568 401 RHFVDETSFIRSVKLVAESLARHIYGYQGK--NIQIFADNSSLAVNPSYIRSWLDLLSQTPRVAPFISKNDPFIMALKKE 478 (561)
Q Consensus 401 ~d~id~~~L~~~~~~vaeaLa~~iy~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ls~~pR~~~~l~~~~~~~~~l~~~ 478 (561)
++.+|.+.|.+++|+|||+|+++||+-.++ ++.+|.+ +++|+++++++||+||+++||.+++.+||++++++|+++
T Consensus 395 rsrldedtLi~ntRlIaEAla~~iy~ekG~dp~s~vf~e--qlai~~e~vds~ld~f~~~Pr~a~l~~kde~~~s~lk~~ 472 (555)
T KOG2526|consen 395 RSRLDEDTLIDNTRLIAEALAGYIYDEKGPDPDSRVFSE--QLAISKEAVDSFLDQFASRPRPAGLQRKDESITSNLKSV 472 (555)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhccCCCCCCcccchh--hhhcCHHHHHHHHHHhccCCcccccccCcchHHHHHHHH
Confidence 999999999999999999999999986554 4667765 999999999999999999999999999999999999999
Q ss_pred HhhcccceEEEeEEeccceEEeccccceEEEEEecchhHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCCCCcc
Q 008568 479 LADHTDEVIMQHEVLDGMFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKV 558 (561)
Q Consensus 479 l~~~l~~v~~~~~~~d~~~~fy~~~~~~l~~y~vkpa~FDl~l~~~i~~Yl~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (561)
|++|+++||++|++.|.||+||||+|++||+||||||+|||+|+++|++||+++|+++.+++++.|+++++||+|||+|+
T Consensus 473 le~Yln~vk~~h~k~Daef~fydqnk~~LnayrVkpavFDLlLa~vigaYL~a~f~a~q~f~r~yd~v~~l~r~~p~vk~ 552 (555)
T KOG2526|consen 473 LEGYLNVVKSAHTKTDAEFFFYDQNKARLNAYRVKPAVFDLLLAAVIGAYLSAFFYAAQHFQRTYDGVVALIRRPPSVKI 552 (555)
T ss_pred HHHHHhhhhheeeccCceEEEEccchhheeeeeechHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008568 559 KTA 561 (561)
Q Consensus 559 ~~~ 561 (561)
|+.
T Consensus 553 k~~ 555 (555)
T KOG2526|consen 553 KMG 555 (555)
T ss_pred cCC
Confidence 973
No 2
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.97 E-value=1.4e-29 Score=252.81 Aligned_cols=204 Identities=27% Similarity=0.360 Sum_probs=161.8
Q ss_pred CEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcc---
Q 008568 220 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFD--- 296 (561)
Q Consensus 220 ~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~--- 296 (561)
|+|+++|++|++++++++++||++++||+++||++|++|+++.. .....++||+|+||+||.+||+||+||+++|.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~-~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~ 79 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLP-DSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGN 79 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhh-ccccccCcEEEEEecCccccccchHHHHHHHHcCc
Confidence 69999999999999999999999999999999999999999853 23567999999999999999999999999874
Q ss_pred -h--------hhhcCeeEEEEeccccCCCC-ceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCC
Q 008568 297 -Q--------RLRESIDYAICLNSVGSWNN-ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAW 366 (561)
Q Consensus 297 -~--------~~l~~I~~vlnLD~iG~~~~-~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~s 366 (561)
+ ..+++|+++||+++||...+ .+|+|+..+...+...++.+.+.++++..+.......+..+...+.+||
T Consensus 80 f~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPs 159 (234)
T PF05450_consen 80 FPSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPS 159 (234)
T ss_pred CcccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcc
Confidence 2 44689999999999999733 6999998554443344555666665554433332222233444568899
Q ss_pred cccchhcC--CCeEEEEeccCCCCCccccCCCCCCCcCCCCH---------------HHHHHHHHHHHHHHHHHHh
Q 008568 367 EHEQFSRL--RVTAATLSELSAAPELLESTGGLLDSRHFVDE---------------TSFIRSVKLVAESLARHIY 425 (561)
Q Consensus 367 dHe~F~~~--gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~---------------~~L~~~~~~vaeaLa~~iy 425 (561)
..++|.++ +||++.|+++...... +.+||++|+.++||+ ..+++.++.+|..+||.||
T Consensus 160 S~~sFLr~~~~i~~vVLtd~~~~f~N-~~y~S~~D~~~ni~~~y~~~~~~~~~~~~~~~~~~~~~~va~~va~~lY 234 (234)
T PF05450_consen 160 SLQSFLRKDPNIPGVVLTDHDSQFTN-KYYNSILDDAENINFSYPNNSTPEEDLNFVTSTQMSLANVATLVARALY 234 (234)
T ss_pred hHHHHHccCCCCCEEEecCCCccccc-CCccCcccChhhhcCccCccCChhHhhccccHHHHHHHHHHHHHHHhhC
Confidence 99999995 5999999997763211 123899999998877 3667889999999999998
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=1.2e-28 Score=235.03 Aligned_cols=175 Identities=25% Similarity=0.294 Sum_probs=119.8
Q ss_pred EEEEEeccCCCCCC-C-CCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchh
Q 008568 221 TIAIVASYDTFGAA-P-ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQR 298 (561)
Q Consensus 221 ~IvI~AHyDs~g~~-~-~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~ 298 (561)
+|||+|||||++.. + ...+||+|||||+++|||+||.|++.. .+++++|+|+||+|||.|+.||++|+++ ...
T Consensus 2 ~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~----~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~ 76 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK----PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHE 76 (179)
T ss_dssp EEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST----HSSSEEEEEEEESSGGGTSHHHHHHHHH-HHC
T ss_pred EEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh----cccCccEEEEEecccccCccchHHHHHh-hhc
Confidence 89999999999821 1 358999999999999999999999854 3568999999999999999999999984 344
Q ss_pred hhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHH-HHHHHHhCCeeeeccccccCCCCCCCCcccchhcCCCe
Q 008568 299 LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGF-TNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVT 377 (561)
Q Consensus 299 ~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l-~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~~gIP 377 (561)
..+++.++|||||+|.++..++....+ ...+.+.+....+ .......+..... .......+||.+|...|||
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sD~~~F~~~gip 149 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSP-SLPSRLEAYLSSFKQPYGSSLGPDVPP------EKPTFGGSDHYPFSKAGIP 149 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGG-GHHHHHHHHHHHHHHHHHCHTSSECEE------EESSTTSSTCHHHHTTT-E
T ss_pred ccccceeEEeccccccCcccceeeeec-cccchhhhhhhhhhhhhhccccccccc------ccCCCCCCCcHhhhcCCEe
Confidence 678999999999999973344433332 2111122333222 1112222222211 1123457899999999999
Q ss_pred EEEEeccCCCCCccccCCCCCCCcCCCCHHHHH
Q 008568 378 AATLSELSAAPELLESTGGLLDSRHFVDETSFI 410 (561)
Q Consensus 378 Avtls~~~~~~d~~~~r~si~Dt~d~id~~~L~ 410 (561)
+++++.... ....+||..||.++||.+.|+
T Consensus 150 ~~~~~~~~~---~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 150 AVTLSSTDG---YNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp EEEEEESSS---SGTTTTSTT-SGGGC-HHHH-
T ss_pred EEEEEecCC---CCCCCCCcccChhhcCCccCC
Confidence 999998761 122447899999999998874
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.93 E-value=5.3e-25 Score=230.00 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=153.5
Q ss_pred CCcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC----------CCCCCccchhHHHHHHHHHHHHhhcccCCCCC
Q 008568 198 PTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (561)
Q Consensus 198 ~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~ 267 (561)
....||+|.++|.. .+.|+++|||||++-.. ...+||+||+||++++||+||.|++.
T Consensus 95 ~~g~nVIa~~~G~~-------~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~------ 161 (346)
T PRK10199 95 VTGSTVIAAHEGKA-------PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV------ 161 (346)
T ss_pred CccceEEEEECCCC-------CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC------
Confidence 35789999998833 36899999999986311 13589999999999999999999753
Q ss_pred CCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHH-HHHHHHHHHHHh
Q 008568 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQ-IFEGFTNVAEEL 346 (561)
Q Consensus 268 ~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~-l~~~l~~~a~~~ 346 (561)
+++++|.|+++++||.|+.||++|++++++..+++|.++||+||++.. +.++++....... .+.+ ..+.+.++|+++
T Consensus 162 ~~~~~I~fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~-~~~~~~~d~~~~~a~~~ 239 (346)
T PRK10199 162 PTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPE-AVRKLTRDRALAIARRH 239 (346)
T ss_pred CCCCcEEEEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHH-HHhHHHHHHHHHHHHHc
Confidence 357899999999999999999999998766567899999999999985 8888875433211 1222 235567778888
Q ss_pred CCeeeeccccccC--CCCCCCCcccchhcCCCeEEEEeccCC---CCCccc--------cC----C-CCCCCcCCCCH--
Q 008568 347 GFKVGLKHKKINI--SNPRVAWEHEQFSRLRVTAATLSELSA---APELLE--------ST----G-GLLDSRHFVDE-- 406 (561)
Q Consensus 347 ~i~v~~~~~kin~--~~~~~~sdHe~F~~~gIPAvtls~~~~---~~d~~~--------~r----~-si~Dt~d~id~-- 406 (561)
|+.+...+.+... .....+|||.+|+++|||++++..... ..|.++ +. | +-+|..+.++.
T Consensus 240 g~~~~~~~~~~~~~p~g~~~rSDH~~F~~~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~ 319 (346)
T PRK10199 240 GIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKAL 319 (346)
T ss_pred CCccccCCCccccccCCCcCCcccHHHHhcCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhc
Confidence 9888665443210 112346899999999999999965321 011111 11 3 23444433333
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcc
Q 008568 407 -TSFIRSVKLVAESLARHIYGYQ 428 (561)
Q Consensus 407 -~~L~~~~~~vaeaLa~~iy~~~ 428 (561)
..+.+.++...+.|..+|-+++
T Consensus 320 pgri~~~~~~~~~~~~~~~~~~~ 342 (346)
T PRK10199 320 PGRIERRCRDVVRIMLPLVKELA 342 (346)
T ss_pred chHHHHHHHhHHHHHHHHHHHHh
Confidence 4566667777777777776665
No 5
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.6e-21 Score=204.24 Aligned_cols=293 Identities=16% Similarity=0.204 Sum_probs=222.9
Q ss_pred HhHHHHHHHHhhccCCCCc-EEEeechhhHHHHHHHHhhccC--CCCCC------------------ce--------eec
Q 008568 131 KNVLLELEKLLVHAKLPYP-VYFAFENDEIDAVLDDVKKNDA--TGQPA------------------TA--------TTG 181 (561)
Q Consensus 131 ~~~~~~le~~Ll~~~~~~P-vyf~~~~~~~~~i~~~~~~~~~--~~~~~------------------s~--------~~~ 181 (561)
..+|..+...++..++..| |.|+...++.+-|.+|+++.+. +|... |. -..
T Consensus 59 ~~~~~a~~n~~~~k~~~~~~i~~~~~sn~teiikq~~~~hn~p~sg~~stf~~c~ms~~a~nhn~~~se~c~rrg~~~~~ 138 (596)
T KOG2657|consen 59 INSRGAITNDGLMKIDWRIQIVFIDNSNDTEIIKQCYSMHNKPKSGGSSTFPYCGMSFRAANHNAGNSEICYRRGKNDAK 138 (596)
T ss_pred ccccccccccchhcccCcceEEEeecccHHHHHHHHHHHhCCCCCCCCCCCchhhhhchhhhcCccccHHHHhcCCcchh
Confidence 3588999999999999999 9999888899999999987542 22111 10 012
Q ss_pred ceEEEEecCCCcccCCCC-cceEEEEecCCCCCC-CCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhh
Q 008568 182 GYKLVIPIAEPKKVASPT-ITNIQGWLQGLKADG-DANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFS 259 (561)
Q Consensus 182 ~~~~~~s~~~~~~~~~~~-~~NV~g~L~G~~~~~-~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs 259 (561)
-+|+.. ...+...|.+. ..||+..+++..... .+...+++|.+|.+|+++.++..++||++--+|++++|..||+++
T Consensus 139 ~iq~~d-s~~~~~~C~pl~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~ 217 (596)
T KOG2657|consen 139 LIQMID-SGDAPQLCGPLHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALK 217 (596)
T ss_pred hhhhhc-cCCcchhccccCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhc
Confidence 346543 45577789988 999999998865332 333478999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcc----hhhhcC---eeEEEEeccccCC-CCceeEEeccCCchhH
Q 008568 260 LLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFD----QRLRES---IDYAICLNSVGSW-NNELWIHVSKPPENAY 331 (561)
Q Consensus 260 ~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~----~~~l~~---I~~vlnLD~iG~~-~~~l~lhvs~~p~~~~ 331 (561)
+.. .-+..++||+|+++.||.++|+||.+++.+|+ |+..++ |+++|.+.+||.. +.++|+|+.+....+.
T Consensus 218 r~p--ai~nl~rnV~f~~f~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv 295 (596)
T KOG2657|consen 218 RQP--AINNLNRNVFFAFFNGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSV 295 (596)
T ss_pred cCc--ccccccceeEEEEeecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhH
Confidence 876 23457899999999999999999999999874 555677 9999999999986 4689999875442222
Q ss_pred HHHHHHHHHHHHHHh-CCeeeeccccccCCCCCCCCcccchhc--CCCeEEEEeccCCCCCcccc-CCCCCCCcCCCCH-
Q 008568 332 IKQIFEGFTNVAEEL-GFKVGLKHKKINISNPRVAWEHEQFSR--LRVTAATLSELSAAPELLES-TGGLLDSRHFVDE- 406 (561)
Q Consensus 332 ~~~l~~~l~~~a~~~-~i~v~~~~~kin~~~~~~~sdHe~F~~--~gIPAvtls~~~~~~d~~~~-r~si~Dt~d~id~- 406 (561)
-.+..+.|..+++.. +..+.+. +.-+.+++.+|+.-++|.| .++.|+.|.+.+.. ++.+ +|||+|+.++||.
T Consensus 296 ~nqtld~L~~~ekSlrs~~f~ll-~~s~~s~~lPPsSlqsFlR~dpn~saVvLad~~~~--f~NKyYhSilDdaeNin~s 372 (596)
T KOG2657|consen 296 KNQTLDVLDRIEKSLRSHAFDLL-KPSGSSDRLPPSSLQSFLRADPNVSAVVLADYGKE--FENKYYHSILDDAENINDS 372 (596)
T ss_pred HHHHHHHHHHHHhcccccCeeee-cCCCCCCCCChHHHHHHHhhCCCcceEEeccCCch--hhhhhhhhhhcchhhccch
Confidence 345556666555432 2333332 2334456788999999999 58999999887643 2222 2899999999987
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHhhccC
Q 008568 407 ----------------TSFIRSVKLVAESLARHIYGYQG 429 (561)
Q Consensus 407 ----------------~~L~~~~~~vaeaLa~~iy~~~~ 429 (561)
+..++-++.+|..+++.+|+...
T Consensus 373 y~~al~evea~~~~ilas~ak~v~nva~~v~~aly~~~~ 411 (596)
T KOG2657|consen 373 YEKALQEVEAVSTAILASAAKYVGNVADEVVAALYKKLI 411 (596)
T ss_pred hhhhhchhhhhhhcchHhhhhhhhhhHHHHHHHHHHHhh
Confidence 36677788999999999987663
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=187.85 Aligned_cols=194 Identities=19% Similarity=0.166 Sum_probs=122.5
Q ss_pred CCcceEEEEecCCCCCC-----CCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCcee
Q 008568 198 PTITNIQGWLQGLKADG-----DANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (561)
Q Consensus 198 ~~~~NV~g~L~G~~~~~-----~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~n 272 (561)
....|+.+.++|..... .....+.+++++|+|+... .+||+|||||+++|||+||.|+.. +|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~----~~GA~DNasGva~llEiAr~l~~~------~p~~~ 251 (435)
T COG2234 182 LTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPT----GPGADDNASGVAALLELARVLKGN------PPKRT 251 (435)
T ss_pred eEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcC----CCCcccccHHHHHHHHHHHHHhcC------CCCce
Confidence 34677777777752110 0012445555566665333 799999999999999999999874 37999
Q ss_pred EEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeee
Q 008568 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGL 352 (561)
Q Consensus 273 IlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~ 352 (561)
|.|++|++||.|+.||++|+.++.....+++..|||+||+|..+..-+......+... +...+...+...+..+..
T Consensus 252 v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 327 (435)
T COG2234 252 VRFVAFGAEESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLER----VPPGLRAVAALIGRPVDP 327 (435)
T ss_pred EEEEEecchhhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCcc----ccchHHHHHHHHHhhccc
Confidence 9999999999999999999998764456788889999999996312222222222110 111111211211111111
Q ss_pred ccccccCCCCCCCCcccchhcCCCeEEEEeccCCCCC-ccccCCCCCCCcCCCCHHHHHH
Q 008568 353 KHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPE-LLESTGGLLDSRHFVDETSFIR 411 (561)
Q Consensus 353 ~~~kin~~~~~~~sdHe~F~~~gIPAvtls~~~~~~d-~~~~r~si~Dt~d~id~~~L~~ 411 (561)
........+|||.+|.+.++|++.++....... .....|+..|+ ++ +...+..
T Consensus 328 ----~~~~~~~~~sd~~~f~~~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~ 381 (435)
T COG2234 328 ----STVQDFDPRSDHYPFTEAGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQ 381 (435)
T ss_pred ----cccCCCCCCCcchhhhhcCCcceeeeecCCccccccccccccccc-cc-chhhhcc
Confidence 011233568999999999999998877544321 11123777887 66 5544433
No 7
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.77 E-value=5.4e-18 Score=190.98 Aligned_cols=209 Identities=18% Similarity=0.211 Sum_probs=145.0
Q ss_pred cCCCCcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEE
Q 008568 195 VASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNIL 274 (561)
Q Consensus 195 ~~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIl 274 (561)
.....+.||+|.++|... ...+|||+||.|++ .+||.|.+||++.|+|++|.|+.+++. +=+|+|+|+
T Consensus 333 ~~~~ki~NIig~I~Gs~e-----pD~~ViigahrDSw------~~Ga~dp~sGta~Ll~i~~~~~~~~k~-gwrP~RtI~ 400 (702)
T KOG2195|consen 333 REETKIQNIIGKIEGSEE-----PDRYVIIGAHRDSW------TFGAIDPNSGTALLLEIARALSKLKKR-GWRPRRTIL 400 (702)
T ss_pred eeeeeeeeEEEEEecCcC-----CCeEEEEecccccc------ccCCcCCCccHHHHHHHHHHHHHHHHc-CCCccceEE
Confidence 556679999999999653 36799999999998 578999999999999999999998853 368999999
Q ss_pred EEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeecc
Q 008568 275 FGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKH 354 (561)
Q Consensus 275 F~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~ 354 (561)
|++|+|||+|++||..|+|.+.......+..+||+|+++.++.++ |+...|. ..+++ +++++...-......
T Consensus 401 F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l--~~~~~Pl---L~~li---~~~~k~~~~p~~~~~ 472 (702)
T KOG2195|consen 401 FASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTL--HVKTTPL---LTDLI---EEAAKSVLSPDKGDQ 472 (702)
T ss_pred EEEccchhccccccHHHHHHHHHHhhheeEEEEeccccccCCcee--EEecCcc---HHHHH---HHHHhccCCCCcccc
Confidence 999999999999999999986555567889999999999864444 4444442 23343 333333211111111
Q ss_pred ccccCCCCCCCCcccchhc-CCCeEEEEeccCCCCCccccCCCCCCCc---CCCCHHHHHHHHHHHHHHHHHHHhhccC
Q 008568 355 KKINISNPRVAWEHEQFSR-LRVTAATLSELSAAPELLESTGGLLDSR---HFVDETSFIRSVKLVAESLARHIYGYQG 429 (561)
Q Consensus 355 ~kin~~~~~~~sdHe~F~~-~gIPAvtls~~~~~~d~~~~r~si~Dt~---d~id~~~L~~~~~~vaeaLa~~iy~~~~ 429 (561)
.. ......-.+||.+|.. .|||++.+......+ ..||.+||. +++--+....+++ ++..+.-.+..+.+
T Consensus 473 ~~-~v~~~g~~Sd~~~F~~~~GIpsv~~~f~~~yP----~yhs~~dt~~~~~k~~D~~~~~~~~-~a~~~~~~~l~l~~ 545 (702)
T KOG2195|consen 473 SN-RVLSLGGGSDYASFLQFAGIPSVDFAFNRTYP----FYHSTYDTYEWLDKLLDPKFKQHLA-AAGVLGLELLILAD 545 (702)
T ss_pred ce-eEeccCCCCcchhhccccCcceeeeeecCCcc----eeecccCcHHHHHHhcchhHHHHHH-HHHHHHHHHHHHhc
Confidence 00 0111233579999988 899999887765332 347899994 4433334444444 33444444444443
No 8
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=159.89 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=128.9
Q ss_pred cCCCCcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEE
Q 008568 195 VASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNIL 274 (561)
Q Consensus 195 ~~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIl 274 (561)
.+-..+.||+-+|.|++.. ..-.|++.|||||.+. +|||.|+|+|||++||++|.+++.+ +..+++|+
T Consensus 123 ~~Y~~i~NIvVki~~k~~~----~~~~lLlnaHfDSvpt----~~gAtDDg~~va~mLe~lRv~s~~~----~~l~~~vV 190 (834)
T KOG2194|consen 123 LVYQNISNIVVKISPKNGN----DKNALLLNAHFDSVPT----GPGATDDGSGVASMLEALRVLSKSD----KLLTHSVV 190 (834)
T ss_pred heeeeeeeEEEecCCCCCC----ccceeeeeccccccCC----CCCCCcchhHHHHHHHHHHHhhcCC----CcccccEE
Confidence 4556799999999987753 2359999999999998 9999999999999999999999865 34589999
Q ss_pred EEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHH-hCCeeeec
Q 008568 275 FGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEE-LGFKVGLK 353 (561)
Q Consensus 275 F~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~-~~i~v~~~ 353 (561)
|+|.++||.+++||..|+.+|+ ..+++.++||||..|.++..+ +..++|.. +.++... +.+++ ++-.+.-
T Consensus 191 FLfNgaEE~~L~gsH~FItQH~--w~~~~ka~INLea~GsGGrei-LFQagp~~-wl~k~Y~----~~~phPf~stlge- 261 (834)
T KOG2194|consen 191 FLFNGAEESGLLGSHAFITQHP--WSKNIKAVINLEAAGSGGREI-LFQAGPNH-WLLKAYL----QAAPHPFASTLGE- 261 (834)
T ss_pred EEecCcccchhhhcccceecCh--hhhhhheEEeccccCccccee-EEecCCch-HHHHHHH----hhCCCchhhhhHH-
Confidence 9999999999999999999875 458899999999999974444 34444321 2122222 21111 0100000
Q ss_pred cccccCCCCCCC--Ccccchhc-CCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHH
Q 008568 354 HKKINISNPRVA--WEHEQFSR-LRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFI 410 (561)
Q Consensus 354 ~~kin~~~~~~~--sdHe~F~~-~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~ 410 (561)
.-+....++ .|...|.. .++|++.+.....- + -+||..|..+.+-...++
T Consensus 262 ---e~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng--~--vYHTk~D~~~~i~~gs~q 314 (834)
T KOG2194|consen 262 ---ELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNG--Y--VYHTKYDGIQYIPPGSLQ 314 (834)
T ss_pred ---HhhhcCcCccccchHHHHHhCCcccceeeeeecc--c--eEEeecccccccCcchhh
Confidence 000111223 47888865 47888766543321 1 236788988776664433
No 9
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-11 Score=123.76 Aligned_cols=211 Identities=13% Similarity=0.132 Sum_probs=139.0
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEe
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~ 278 (561)
...||++++.+. ...+.|+.+|||+--.-++..-||.|.|--+|++|++||.+.+.-..+..++.-+++.+||
T Consensus 104 ~f~nii~tl~~~-------A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFF 176 (338)
T KOG3946|consen 104 NFNNLIATLDPN-------ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFF 176 (338)
T ss_pred eeeeEEEecCCC-------cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEe
Confidence 367899988753 3569999999999866445568999999999999999999876432233467789999999
Q ss_pred CCCCC--------CCcchHHHHHhcch---------hhhcCeeEEEEeccccCCCCceeEEeccCCc-hhHHHHHHHHHH
Q 008568 279 SGGPY--------NYNGTHKWLRSFDQ---------RLRESIDYAICLNSVGSWNNELWIHVSKPPE-NAYIKQIFEGFT 340 (561)
Q Consensus 279 ~gEe~--------g~~GS~~~v~~~~~---------~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~-~~~~~~l~~~l~ 340 (561)
+|||- .++||++..+.+.. ..++.|+..+-+|-+|..+..++-+...... .....++..++.
T Consensus 177 DGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l~ 256 (338)
T KOG3946|consen 177 DGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGELA 256 (338)
T ss_pred ccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHHH
Confidence 99763 57899999887431 1357788888889999863333333221110 001112222221
Q ss_pred HHH--HHhCCeeeeccccccCCC--CCCCCcccchhcCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHH
Q 008568 341 NVA--EELGFKVGLKHKKINISN--PRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLV 416 (561)
Q Consensus 341 ~~a--~~~~i~v~~~~~kin~~~--~~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~v 416 (561)
.++ +.+. .+ ..+.+... ...--||.+|.++|+|.+.+...+.+. -+|+..|+..++|+.+...-+.++
T Consensus 257 ~~g~l~s~r--~~--~~~Fq~~~~~~~veDDHiPFlrrgVPVLHlI~~pFPs----vWHt~dD~e~nldy~tt~~~~lil 328 (338)
T KOG3946|consen 257 LLGLLASHR--LP--PRYFQPGGLSSVVEDDHIPFLRRGVPVLHLIPVPFPS----VWHTPDDNERNLDYATTDNLALII 328 (338)
T ss_pred HHHHHHhcc--CC--chhccccCccccccCCcchhhhcCCceEEecCCCCcc----cccCccchhhcCCchhHHHHHHHH
Confidence 111 1111 11 11111111 123358999999999999998876542 447899999999998877777777
Q ss_pred HHHHHHHH
Q 008568 417 AESLARHI 424 (561)
Q Consensus 417 aeaLa~~i 424 (561)
..=++.++
T Consensus 329 r~Fv~eyL 336 (338)
T KOG3946|consen 329 RVFVAEYL 336 (338)
T ss_pred HHHHHHHh
Confidence 66666654
No 10
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=113.04 Aligned_cols=279 Identities=16% Similarity=0.111 Sum_probs=165.3
Q ss_pred ccccccccccccccccCCCCcccceEEEEeccCCCHHHHHHH-Hh-hcCCcceEEEEcCCccccCCCCCCCCcchhhHHH
Q 008568 54 GSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEY-VS-RKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVK 131 (561)
Q Consensus 54 Gsr~a~~~~ea~s~~~~~~~~~~R~~vl~~~~d~~~~~~~~~-~~-~~~~~~gvliilP~~~~~~s~~~~n~~~~~~~~~ 131 (561)
|.=+.+-.-|+|-+.- .++.-+|-+|-.+.+++. .++.+ +. .++.+-|||+-+-..-......
T Consensus 69 ~PYsls~~IEgr~v~~-~gD~~Gr~~Va~~pq~vd--d~k~~~i~Aae~ga~a~~f~~~~~rriV~~G------------ 133 (486)
T COG4882 69 GPYSLSGDIEGRPVVL-EGDAGGRVVVARAPQVVD--DLKAAAILAAEAGAEALLFESRDPRRIVTGG------------ 133 (486)
T ss_pred cccccccccccceecc-cCCCCCeEEeeeccccHH--HHHHHHHHHHHcCCeEEEEecCCceeEEecc------------
Confidence 3334445556665441 234455555556666653 33222 22 3445666766543332222222
Q ss_pred hHHHHHHHHhhccCCCCcEEEeechhhHHHHHHHHhhccCCCCCCceeecceEEEEecCCCcccCCCCcceEEEEecCCC
Q 008568 132 NVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLK 211 (561)
Q Consensus 132 ~~~~~le~~Ll~~~~~~Pvyf~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~~~~~~NV~g~L~G~~ 211 (561)
+++..+-..-+++|++.++++ .-..+- .+...++.++.. +. -.-+.|+++.=.|
T Consensus 134 ----d~gy~~~s~PtPIPva~v~en-~~~y~~---------------~~~rvrl~vD~~-~~---~ty~y~~Ia~~~~-- 187 (486)
T COG4882 134 ----DWGYSVSSSPTPIPVAVVPEN-YSRYAE---------------EAGRVRLWVDAC-VE---RTYDYNVIAVDGG-- 187 (486)
T ss_pred ----cccccCCCCCCCcceEEeccC-cchhhc---------------cceeEEEEEecc-cc---eeEEEEEEEecCC--
Confidence 456666677799999999875 222211 112222333211 11 1136677765433
Q ss_pred CCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCC------
Q 008568 212 ADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNY------ 285 (561)
Q Consensus 212 ~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~------ 285 (561)
...+|+|+||+||. ..|+.||--|++.-.|+++.|..- .+-.-.+.|++||.|.
T Consensus 188 ------en~vv~i~AH~DHW------~~G~tDN~lg~~~AV~~~~~lr~~--------~~~~~lv~FtAEE~g~p~~~sf 247 (486)
T COG4882 188 ------ENGVVLIGAHLDHW------YTGFTDNILGVAQAVETAGRLRGR--------GLAAGLVVFTAEEHGMPGMASF 247 (486)
T ss_pred ------CCCceEEeechhhh------hhcccchhhhHHHHHHHHHHHhhc--------CcceeEEEEeccccCCCCCcce
Confidence 24599999999998 579999999999999999988642 2233466778888776
Q ss_pred ---cchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCC
Q 008568 286 ---NGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNP 362 (561)
Q Consensus 286 ---~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~ 362 (561)
.||+.|+++.. .-++|.+.+|+|-+|.. .+-+ +.. .++.+.. +++|...- ..+
T Consensus 248 yWa~GSr~~lk~~k--~~~~v~~~VN~Dv~g~~--~lv~--~~~------P~L~e~~----~~~g~~~v--------esp 303 (486)
T COG4882 248 YWAAGSRGLLKESK--AAEEVEAYVNFDVAGYR--CLVA--SGA------PQLVEHA----LEAGAVEV--------ESP 303 (486)
T ss_pred eecccchHHHhhcC--Cchhhhheecccccccc--chhh--hcC------hHHHHHH----HHhCCcee--------cCC
Confidence 58888888743 34789999999999974 2222 111 2444332 33332221 134
Q ss_pred CCCCcccchhcCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 008568 363 RVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARHI 424 (561)
Q Consensus 363 ~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa~~i 424 (561)
.+.+|-..+.+.|||.+|++++.-+ +....+|+..||+.. ++ |+.-++++.-|.+
T Consensus 304 e~y~Ds~~y~~aGiPS~Ti~SL~~~-~~~e~yh~p~Dtpa~--~~----n~~t~~d~a~r~v 358 (486)
T COG4882 304 EPYCDSIMYAWAGIPSLTIHSLWCP-GVQEAYHTPRDTPAS--WD----NAWTAVDAAVRTV 358 (486)
T ss_pred CcccchhhhhhcCCCeeEeeeccCC-CccceecCCCCCchh--HH----HHHHHHHHHHHHH
Confidence 4577888999999999999998743 111123799999833 22 3344555555554
No 11
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.09 E-value=1.1e-08 Score=107.50 Aligned_cols=202 Identities=18% Similarity=0.201 Sum_probs=115.7
Q ss_pred cceEEEEecCCCcccCCCCcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhc
Q 008568 181 GGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSL 260 (561)
Q Consensus 181 ~~~~~~~s~~~~~~~~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~ 260 (561)
..|.+++... ..+-...--.-.++|.. .+.|++++|.+|=++ |+||-||++++.+|||.|+.
T Consensus 102 g~Y~V~IdS~----l~~G~L~ygE~~ipG~s-------~~EillsthiCHPsm-------ANdnLSG~~v~~~La~~L~~ 163 (386)
T PF09940_consen 102 GEYEVVIDST----LEDGSLTYGEFVIPGES-------DEEILLSTHICHPSM-------ANDNLSGPAVLTFLAKWLKQ 163 (386)
T ss_dssp SEEEEEEEEE----EES-EEEEEEEEE--SS-------S-EEEEEEE----S--------TTTTHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeee----ecCCceeEEEEEecCCC-------CCeEEEEEeccCccc-------ccccccHHHHHHHHHHHHhc
Confidence 4566665432 22223333334567733 569999999999544 89999999999999999987
Q ss_pred ccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHH
Q 008568 261 LYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFT 340 (561)
Q Consensus 261 l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~ 340 (561)
+. ++|+..|+|.. +-+||-.|+........++|.+-++|.|+|.. ......-|.. .++.+.++. .
T Consensus 164 ~~------~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~-~~~syk~Sr~-g~~~iDr~~---~ 228 (386)
T PF09940_consen 164 LP------NRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDD-GAYSYKRSRR-GNTLIDRAA---A 228 (386)
T ss_dssp S--------SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SS-S-EEEE--TT-SSSHHHHHH---H
T ss_pred CC------cCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCC-CCcceecCCC-CCcHHHHHH---H
Confidence 64 35889999988 78999999997554444559999999999974 3222111111 133232332 2
Q ss_pred HHHHHhCCeeeeccccccCCCCCCCCcccchhcCC--CeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHH
Q 008568 341 NVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLR--VTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAE 418 (561)
Q Consensus 341 ~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~~g--IPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vae 418 (561)
.+.++.+-++.. ..+.+ ..+|...|...| +|...+...+.. .| ..+||..|+.+-|+.+.|+.....+.+
T Consensus 229 ~vl~~~~~~~~~----~~F~~--~GsDERQfcSPG~dLPv~~~~Rs~yg-~y-pEYHTS~Dnl~fi~p~~L~~s~~~~~~ 300 (386)
T PF09940_consen 229 HVLKHSGPNFKI----YDFLP--RGSDERQFCSPGFDLPVGSLMRSKYG-EY-PEYHTSLDNLDFISPEGLEGSFEVLLE 300 (386)
T ss_dssp HHHHHSSS-EEE----E---S---SSTHHHHTSTTT---EEEEESS-TT----TTTTBTTSSGGG--HHHHHHHHHHHHH
T ss_pred HHHHhcCCCceE----ecccc--cCCCcceeecCCcCCceeeeeccccc-CC-cccccCCCccccCCHHHHHHHHHHHHH
Confidence 333444333332 12222 368999999976 999999876532 22 244899999999999999998887777
Q ss_pred HHHHH
Q 008568 419 SLARH 423 (561)
Q Consensus 419 aLa~~ 423 (561)
++..+
T Consensus 301 ~i~~l 305 (386)
T PF09940_consen 301 AIEIL 305 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 12
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.48 E-value=3.7e-07 Score=98.77 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=69.7
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++|+++|.++ +.|.|++++|+||++- -|.-|+..||++.||++|.|.... .+|+++|-+++|..
T Consensus 56 gN~~~~~~g~~~-----~~~~i~~gsHlDtv~~-----gG~~dg~~Gv~~~le~~~~l~~~~----~~~~~~i~vi~~~~ 121 (406)
T TIGR03176 56 GNLYGRLVGTEF-----PEETILTGSHIDTVVN-----GGNLDGQFGALAAWLAVDYLKEKY----GAPLRTVEVLSMAE 121 (406)
T ss_pred CcEEEEecCCCC-----CCCeEEEeccccCCCC-----CCccCchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 699999999664 4789999999999975 578899999999999999998743 47899999999999
Q ss_pred CCCC-----CcchHHHHH
Q 008568 281 GPYN-----YNGTHKWLR 293 (561)
Q Consensus 281 Ee~g-----~~GS~~~v~ 293 (561)
||-+ ++||+.|..
T Consensus 122 EEg~rf~~~~~Gs~~~~g 139 (406)
T TIGR03176 122 EEGSRFPYVFWGSKNIFG 139 (406)
T ss_pred ccCccCCcccccHHHHhC
Confidence 9976 999999985
No 13
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.43 E-value=6.7e-07 Score=96.35 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=68.2
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.||+|+++|.++ ..|.|++++|+|+++. .|.-|+..|+++.|++++.|++.. .+++++|.|+++.+
T Consensus 54 ~nl~a~~~g~~~-----~~~~l~~~~H~DtV~~-----gg~~dg~~gvaa~l~a~~~l~~~g----~~~~~~i~~~~~~d 119 (401)
T TIGR01879 54 GNLIGRKEGTEP-----PLEVVLSGSHIDTVVN-----GGNFDGQLGVLAGIEVVDALKEAY----VVPLHPIEVVAFTE 119 (401)
T ss_pred CcEEEEecCCCC-----CCCEEEEecccccCCC-----CCccCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEeC
Confidence 599999998553 2579999999999975 367788999999999999998743 46789999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 008568 281 GPY-----NYNGTHKWLRS 294 (561)
Q Consensus 281 Ee~-----g~~GS~~~v~~ 294 (561)
||. ++.||+.|+..
T Consensus 120 EE~~~f~~~~~Gs~~~~~~ 138 (401)
T TIGR01879 120 EEGSRFPYGMWGSRNMVGL 138 (401)
T ss_pred CcCcCcccccccHHHHhcc
Confidence 997 89999999864
No 14
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.42 E-value=1.3e-06 Score=94.56 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=76.9
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-C------------CCCCccchhHHHHHHHHHHHHhhcccCCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A------------LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~ 266 (561)
..|++|.++|.+ .|+|++.+|+|+++... | ++.|+.|+-+|++++|++++.|++..
T Consensus 87 ~~~lia~~~g~~-------~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~---- 155 (410)
T PRK06133 87 GDMVVATFKGTG-------KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLG---- 155 (410)
T ss_pred CCeEEEEECCCC-------CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcC----
Confidence 469999997632 46899999999998632 1 35799999999999999999997643
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 267 ~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
.+++.+|.|+|+.+||.|..|++.++++.. .+++++|+++.
T Consensus 156 ~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~----~~~d~~i~~ep 196 (410)
T PRK06133 156 FKDYGTLTVLFNPDEETGSPGSRELIAELA----AQHDVVFSCEP 196 (410)
T ss_pred CCCCCCEEEEEECCcccCCccHHHHHHHHh----ccCCEEEEeCC
Confidence 245679999999999999899999998631 34567777763
No 15
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.40 E-value=7e-06 Score=77.99 Aligned_cols=168 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred EEEeccCCCCCC-CC--------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCc-
Q 008568 223 AIVASYDTFGAA-PA--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN- 286 (561)
Q Consensus 223 vI~AHyDs~g~~-~~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~- 286 (561)
++.||||+++.. .| .+.|++|+..|+++.|.+++.|.+.. ..++++|.|+++..||.|..
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~g~~~ 76 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESG----DDLPGNIIFLFTPDEEIGSIG 76 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTT----TTCSSEEEEEEESTCCGTSTT
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhcc----ccccccccccccccccCCCcc
Confidence 578999999920 01 26799999999999999999998633 46789999999999999998
Q ss_pred chHHHHHhcchhhhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHhCC-eeeeccccccCCCCCCC
Q 008568 287 GTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGF-KVGLKHKKINISNPRVA 365 (561)
Q Consensus 287 GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i-~v~~~~~kin~~~~~~~ 365 (561)
|.++++++... .-.++.+++..|.-+.. .. . +..+ ..+++.+.+++++.+. ...... .. -.
T Consensus 77 g~~~l~~~~~~-~~~~~~~~~~~e~~~~~--~~---~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~-----g~ 138 (189)
T PF01546_consen 77 GAKHLLEEGAF-FGLHPDYVIIGEPTGKG--GV---G--SDND---PPLVQALQAAAQEVGGEPPEPVA--SG-----GG 138 (189)
T ss_dssp HHHHHHHHCEE-EEEEESEEEECECETTS--EE---E--HCTC---HHHHHHHHHHHHHTTSSEEEEEE--ES-----SS
T ss_pred hhhhhhhhccc-ccccccccccccccccc--cc---c--cccc---HHHHHHHHHHHHHHhhccccccc--ee-----cc
Confidence 99999987210 11235666665544432 10 1 1122 2366666777666543 332211 11 13
Q ss_pred Ccccchh---cCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 008568 366 WEHEQFS---RLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLA 421 (561)
Q Consensus 366 sdHe~F~---~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa 421 (561)
.|--.|. ..++|++.+..... .-|+.. +.++.+.+.+.++.+++.|.
T Consensus 139 tD~~~~~~~~~~~~~~i~~G~~~~------~~H~~~---E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 139 TDAGFLAEVKGLGIPAIGFGPGGS------NAHTPD---EYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp STHHHHHCHHHTTEEEEEEESCEE------STTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccceeeeCCCCC------CCCCCC---cEecHHHHHHHHHHHHHHHh
Confidence 4555666 35899998875431 224444 78889999988887776653
No 16
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.36 E-value=1.2e-06 Score=94.61 Aligned_cols=81 Identities=21% Similarity=0.149 Sum_probs=67.7
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++++++|.++ ..|.|++.+|||+++. .|+.|+.+|++++|++++.|.+.. ..++.+|.|+++.+
T Consensus 61 ~nlia~~~g~~~-----~~~~l~~~~H~DtVp~-----~g~~D~~~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (414)
T PRK12890 61 GNLFGRLPGRDP-----DLPPLMTGSHLDTVPN-----GGRYDGILGVLAGLEVVAALREAG----IRPPHPLEVIAFTN 126 (414)
T ss_pred CcEEEEeCCCCC-----CCCEEEEeCcccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEec
Confidence 599999987532 2579999999999985 477899999999999999998643 35688999999999
Q ss_pred CCC-----CCcchHHHHHhc
Q 008568 281 GPY-----NYNGTHKWLRSF 295 (561)
Q Consensus 281 Ee~-----g~~GS~~~v~~~ 295 (561)
||. ++.||+++...+
T Consensus 127 EE~~~~~~~~~G~~~~~~~~ 146 (414)
T PRK12890 127 EEGVRFGPSMIGSRALAGTL 146 (414)
T ss_pred ccccccCCccccHHHHHccc
Confidence 997 779999887643
No 17
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.32 E-value=1.8e-06 Score=91.90 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=76.1
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
.|+++..+|.+ ..|+|++.+|+|+++..+ | .+.|+.|+.+|++++|++++.|.+..
T Consensus 52 ~~~~~~~~g~~------~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~- 124 (375)
T TIGR01910 52 GKVVVKEPGNG------NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAG- 124 (375)
T ss_pred cceEEeccCCC------CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 36777777633 257999999999998741 1 24699999999999999999997643
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccc
Q 008568 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~i 312 (561)
..++++|.|+|+.+||.|..|++.++++- ..++.+++|+.|.-
T Consensus 125 ---~~~~~~i~~~~~~~EE~g~~G~~~~~~~~---~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 125 ---IKPNGNIILQSVVDEESGEAGTLYLLQRG---YFKDADGVLIPEPS 167 (375)
T ss_pred ---CCCCccEEEEEEcCcccCchhHHHHHHcC---CCCCCCEEEECCCC
Confidence 24678999999999999999999999862 22346677777754
No 18
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.29 E-value=1.9e-06 Score=97.68 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=66.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTS 279 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~ 279 (561)
..||+|+++|.++ ..|.|++++|+||+.- -|.-|+..||++.||++|.|.... .+++++|.|++|.
T Consensus 237 ~GNl~~~~~g~~~-----~~~~v~~gsHlDTV~~-----gG~~DG~~Gv~a~lea~~~l~~~~----~~~~~~i~vv~~~ 302 (591)
T PRK13590 237 VGNVVGRYKGSTP-----QAKRLLTGSHYDTVRN-----GGKYDGRLGIFVPMACVRELHRQG----RRLPFGLEVVGFA 302 (591)
T ss_pred CCCEEEEecCCCC-----CCCeEEEecccccCCC-----CCCcccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEec
Confidence 5899999998653 3689999999999964 466799999999999999998743 3567899999999
Q ss_pred CCCC-----CCcchHHHH
Q 008568 280 GGPY-----NYNGTHKWL 292 (561)
Q Consensus 280 gEe~-----g~~GS~~~v 292 (561)
+||. +++||+.|.
T Consensus 303 ~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13590 303 EEEGQRYKATFLGSGALI 320 (591)
T ss_pred CCccccCCccccchHHHh
Confidence 9997 599999754
No 19
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.26 E-value=2.3e-06 Score=97.07 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=68.9
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTS 279 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~ 279 (561)
..||+|+++|.++ ..|.|++++|+||+.- -|.=|+..||++.||++|.|.... .+++++|.|+.|.
T Consensus 237 ~gNv~~~~~g~~~-----~~p~v~~gSHlDTV~~-----gG~~DG~~Gv~a~l~~~~~l~~~~----~~~~~~i~vi~~~ 302 (591)
T PRK13799 237 VGNVVGRYKAADD-----DAKTLITGSHYDTVRN-----GGKYDGREGIFLAIACVKELHEQG----ERLPFHFEVIAFA 302 (591)
T ss_pred CCCEEEEcCCCCC-----CCCeEEEeccccccCC-----CCccccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEec
Confidence 4899999998653 3789999999999964 566789999999999999998743 4678999999999
Q ss_pred CCCC-----CCcchHHHH
Q 008568 280 GGPY-----NYNGTHKWL 292 (561)
Q Consensus 280 gEe~-----g~~GS~~~v 292 (561)
+||. ++.||+.|+
T Consensus 303 ~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 303 EEEGQRFKATFLGSGALI 320 (591)
T ss_pred CCCccCCCccccchHHHh
Confidence 9997 899999998
No 20
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.24 E-value=4.5e-06 Score=90.52 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=77.4
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..||+++++|.++ ...|+|++.+|+|+++..+ | ++.|+.|+-+|++++|.+++.|.+..
T Consensus 62 ~~nvia~~~g~~~----~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~ 137 (421)
T PRK08596 62 DPNVVGVKKGTES----DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAG 137 (421)
T ss_pred CceEEEEecCCCC----CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcC
Confidence 4699999987532 1246899999999987632 1 24799999999999999999997643
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
.+++.+|.|++..+||.|..|+++++++. . ..+++|+.|-
T Consensus 138 ----~~~~~~v~~~~~~dEE~g~~G~~~~~~~~----~-~~d~~i~~ep 177 (421)
T PRK08596 138 ----IELPGDLIFQSVIGEEVGEAGTLQCCERG----Y-DADFAVVVDT 177 (421)
T ss_pred ----CCCCCcEEEEEEeccccCCcCHHHHHhcC----C-CCCEEEECCC
Confidence 34678999999999999989999998762 1 2356777764
No 21
>PRK09133 hypothetical protein; Provisional
Probab=98.19 E-value=6.6e-06 Score=90.54 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=75.8
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
...||++.++|.++ .|.|++.+|+|+++..+ | ++.|+.|+-+|++++|++++.|.+..
T Consensus 87 ~~~nli~~~~g~~~------~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~ 160 (472)
T PRK09133 87 RKGNLVARLRGTDP------KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREG 160 (472)
T ss_pred CceeEEEEecCCCC------CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcC
Confidence 35799999987542 36899999999998631 1 35799999999999999999997642
Q ss_pred CCCCCCCceeEEEEEeCCCC-CCCcchHHHHHhcchhhhcCeeEEEE
Q 008568 263 SNPKTRGRYNILFGLTSGGP-YNYNGTHKWLRSFDQRLRESIDYAIC 308 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe-~g~~GS~~~v~~~~~~~l~~I~~vln 308 (561)
..++++|.|+++..|| .|..|++.+++.+.. .. +..++|+
T Consensus 161 ----~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~-~~-~~~~~i~ 201 (472)
T PRK09133 161 ----FKPKRDIILALTGDEEGTPMNGVAWLAENHRD-LI-DAEFALN 201 (472)
T ss_pred ----CCCCCCEEEEEECccccCccchHHHHHHHHhh-cc-CeEEEEE
Confidence 3567899999999999 899999999886432 11 2356666
No 22
>PRK13381 peptidase T; Provisional
Probab=98.17 E-value=9.8e-06 Score=87.32 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=67.3
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCC------------------------------------------CC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA------------------------------------------LS 238 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~------------------------------------------~~ 238 (561)
.||+|+++|.++ ..|+|++.+|+|+++..+. ++
T Consensus 55 ~nvi~~~~g~~~-----~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 129 (404)
T PRK13381 55 AIVTAKLPGNTP-----GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFS 129 (404)
T ss_pred eEEEEEEecCCC-----CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeC
Confidence 599999987542 2489999999999976331 12
Q ss_pred CCc----cchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 239 VGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 239 ~GA----dDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
.|+ .|+-+|++++|..++.|.+.. .++.+|.|+|..+||.|..|+++++.+
T Consensus 130 rG~~~~g~DmKgg~aa~l~a~~~l~~~~-----~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 130 DGTSVLGADNKAAIAVVMTLLENLTENE-----VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCccccccccHHHHHHHHHHHHHHHhcC-----CCCCCEEEEEEcccccccccHHHHHHh
Confidence 477 899999999999999997642 235689999999999999999999764
No 23
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=98.17 E-value=0.00011 Score=81.75 Aligned_cols=196 Identities=22% Similarity=0.270 Sum_probs=123.4
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEe
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~ 278 (561)
.+.||+|.++.-... ..+.||+++.|++.. .+-|..|++.+|.+||.|++.. --.++|+|+++
T Consensus 2 ~G~nvy~i~rapR~d----~tEaivl~~~~~~~~--------~~~n~~~v~l~lal~~~~~~~~-----~wsKDii~l~~ 64 (504)
T PF04114_consen 2 SGTNVYGILRAPRGD----GTEAIVLVVPWRDSD--------GEYNAGGVALALALARYFRRQS-----YWSKDIIFLFT 64 (504)
T ss_pred CceEEEEEEecCCCC----CceeEEEEEecCCCC--------cccchhhHHHHHHHHHHhhhch-----hhhccEEEEec
Confidence 478999999874432 367999999998643 2557889999999999998743 34689999998
Q ss_pred CCCCCCCcchHHHHHhc-ch-------hhh----cCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHh
Q 008568 279 SGGPYNYNGTHKWLRSF-DQ-------RLR----ESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEEL 346 (561)
Q Consensus 279 ~gEe~g~~GS~~~v~~~-~~-------~~l----~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~ 346 (561)
+. +..|.+.|++++ .. .++ -.|.+.|++|--+...+.+.+...+.--.-.-.++++.+.+.+.+.
T Consensus 65 ~~---~~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~ 141 (504)
T PF04114_consen 65 DD---ELAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKE 141 (504)
T ss_pred CC---cchHHHHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhc
Confidence 74 468999999873 21 011 2688999999877643444444433210000146777777777766
Q ss_pred CCeeeec--cccccCC-CC-------------------CCCCcccchhcCCCeEEEEeccCCCCCccccCCCCCCCcCCC
Q 008568 347 GFKVGLK--HKKINIS-NP-------------------RVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFV 404 (561)
Q Consensus 347 ~i~v~~~--~~kin~~-~~-------------------~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~i 404 (561)
|+..... ..+.... .+ .+...|-.|.+.+|+|+|+...+.+. + ..-
T Consensus 142 gi~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~y~I~aiTl~~~~~~~----------~--~~~ 209 (504)
T PF04114_consen 142 GIPMGVSLHLQPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLRYRIDAITLRGVKSTG----------P--GPH 209 (504)
T ss_pred CCCccccccccccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhhcCccEEEEecccCCC----------C--CCc
Confidence 6443221 1110000 00 12346889999999999996533211 1 122
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCC
Q 008568 405 DETSFIRSVKLVAESLARHIYGYQGK 430 (561)
Q Consensus 405 d~~~L~~~~~~vaeaLa~~iy~~~~~ 430 (561)
++..+. .+-|.+.|.+-|+.++
T Consensus 210 ~~~~~g----r~~E~~~RslNNLlE~ 231 (504)
T PF04114_consen 210 DFTAFG----RILEGIFRSLNNLLER 231 (504)
T ss_pred CHHHHH----HHHHHHHHHHHHHHHh
Confidence 444444 3447888888877765
No 24
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.13 E-value=7e-06 Score=88.90 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=64.7
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++|+++|.++ ..|.|++.+|+|+++. .|.-|+.+|+++.|++++.|.+.. .+++++|.|+++.+
T Consensus 63 gNl~a~~~g~~~-----~~~~l~~~~H~DtVp~-----gg~~D~k~Gv~a~l~a~~~l~~~~----~~~~~~i~v~~~~d 128 (414)
T PRK12891 63 GNLFARRAGRDP-----DAAPVMTGSHADSQPT-----GGRYDGIYGVLGGLEVVRALNDAG----IETERPVDVVIWTN 128 (414)
T ss_pred CCEEEEecCCCC-----CCCeEEEEecccCCCC-----CccccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 499999988542 2589999999999975 355689999999999999998753 46788999999999
Q ss_pred CCCC-----CcchHHHH
Q 008568 281 GPYN-----YNGTHKWL 292 (561)
Q Consensus 281 Ee~g-----~~GS~~~v 292 (561)
||.+ +.||+.|.
T Consensus 129 EE~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 129 EEGSRFAPSMVGSGVFF 145 (414)
T ss_pred cccCcCCcccccHHHHh
Confidence 9975 57998663
No 25
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.13 E-value=7.2e-06 Score=86.61 Aligned_cols=84 Identities=24% Similarity=0.243 Sum_probs=67.4
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCC----------CCCCc----cchhHHHHHHHHHHHHhhcccCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA----------LSVGS----DSNGSGVVALLEVARLFSLLYSNP 265 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~----------~~~GA----dDNaSGvaaLLELAR~fs~l~~~~ 265 (561)
..|++|.++|.+ ..|+|++.+|+|+++..+. .+.|+ .|+-+|++++|++++.|.+..
T Consensus 49 ~~~~~~~~~g~~------~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~--- 119 (361)
T TIGR01883 49 DNNLIARLPGTV------KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE--- 119 (361)
T ss_pred CceEEEEEeCCC------CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC---
Confidence 579999998753 2479999999999986321 34576 677899999999999997632
Q ss_pred CCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 266 KTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 266 ~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
.++.+|.|+|+.+||.|..|++.|...
T Consensus 120 --~~~~~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 120 --TPHGTIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred --CCCCCEEEEEEcccccCchhHhHhChh
Confidence 246789999999999999999988753
No 26
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.12 E-value=1.3e-05 Score=85.62 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=75.3
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|++|.++|.+ ..++|++.+|+|+++..+ | ++.|+.|+-.|++++|++++.|.+..
T Consensus 63 ~~nl~~~~~g~~------~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~ 136 (400)
T PRK13983 63 RPNIVAKIPGGD------GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLG 136 (400)
T ss_pred CccEEEEecCCC------CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhC
Confidence 489999998743 246999999999998632 1 24789999999999999999987632
Q ss_pred CCCCCCCceeEEEEEeCCCCCCC-cchHHHHHhcchhhhcCeeEEEEec
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~-~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
.+++.+|.|+|+.+||.|- .|.+++++.+.. .+...+++++.|
T Consensus 137 ----~~~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~-~~~~~d~~i~~~ 180 (400)
T PRK13983 137 ----IRPKYNLGLAFVSDEETGSKYGIQYLLKKHPE-LFKKDDLILVPD 180 (400)
T ss_pred ----CCCCCcEEEEEEeccccCCcccHHHHHhhccc-ccCCCCEEEEec
Confidence 3567899999999999877 489988876321 123345666654
No 27
>PRK07906 hypothetical protein; Provisional
Probab=98.11 E-value=8.8e-06 Score=88.19 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
..|++++++|.++ ..|.|++.+|+|+++..+ | ++.|+.|+-+|++++|++++.|.+..
T Consensus 51 ~~nv~~~~~g~~~-----~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~- 124 (426)
T PRK07906 51 RANVVARLPGADP-----SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTG- 124 (426)
T ss_pred ceEEEEEEeCCCC-----CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 5799999987542 257899999999998621 1 35799999999999999999997643
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHhc
Q 008568 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSF 295 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g-~~GS~~~v~~~ 295 (561)
..++++|.|+++..||.| ..|+++++++.
T Consensus 125 ---~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 125 ---RRPPRDLVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred ---CCCCccEEEEEecCcccchhhhHHHHHHHH
Confidence 356789999999999985 67999988763
No 28
>PRK09104 hypothetical protein; Validated
Probab=98.05 E-value=1.8e-05 Score=86.91 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=77.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC----------------------CCCCCccchhHHHHHHHHHHHH
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------------------ALSVGSDSNGSGVVALLEVARL 257 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------------------~~~~GAdDNaSGvaaLLELAR~ 257 (561)
..||++.+.|.++ ..|+|++.+|+|+++..+ -++.|+.|+-.|++++|++++.
T Consensus 68 ~~~l~a~~~g~~~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~ 142 (464)
T PRK09104 68 HPMVVAHHEGPTG-----DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRA 142 (464)
T ss_pred CCEEEEEecCCCC-----CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 3599999987432 367999999999987531 1356999999999999999999
Q ss_pred hhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 258 fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
|.+.. ..++.+|.|++.+.||.|-.|.++|+.+... ..+.+++|+.|
T Consensus 143 l~~~~----~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~--~~~~d~~iv~E 189 (464)
T PRK09104 143 WKAVT----GSLPVRVTILFEGEEESGSPSLVPFLEANAE--ELKADVALVCD 189 (464)
T ss_pred HHHhc----CCCCCcEEEEEECccccCCccHHHHHHhhHH--hcCCCEEEEeC
Confidence 98753 2356789999999999999999999986211 12357788878
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=98.05 E-value=2.2e-05 Score=84.36 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C---------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A---------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~---------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|+++.++|.++ ..|+|++.+|+|+++..+ | ++.|+.|+-+|++++|++++.|.+..
T Consensus 57 ~~~l~~~~~g~~~-----~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~ 131 (400)
T TIGR01880 57 KPVVVLTWPGSNP-----ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASG 131 (400)
T ss_pred ceeEEEEEecCCC-----CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcC
Confidence 4689999987442 247999999999998621 1 24689899999999999999997643
Q ss_pred CCCCCCCceeEEEEEeCCCCCCC-cchHHHHHhcchhhhcCeeEEEEec
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~-~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
..++++|.|+|..+||.|- .|.+.++++. ....+++.+++|
T Consensus 132 ----~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~---~~~~~~~~~~~d 173 (400)
T TIGR01880 132 ----FKFKRTIHISFVPDEEIGGHDGMEKFAKTD---EFKALNLGFALD 173 (400)
T ss_pred ----CCCCceEEEEEeCCcccCcHhHHHHHHHhh---hccCCceEEEEc
Confidence 3567899999999999864 6999888751 123345666665
No 30
>PRK05469 peptidase T; Provisional
Probab=98.05 E-value=2.3e-05 Score=84.57 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCC------------------------------------------C
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA------------------------------------------L 237 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~------------------------------------------~ 237 (561)
..||+|.++|... ...|+|++.+|||+++.++. .
T Consensus 55 ~~~v~~~~~g~~~----~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 55 NGYVMATLPANVD----KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred CeEEEEEecCCCC----CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 3589999988531 13589999999999976430 1
Q ss_pred CCCc----cchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 238 SVGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 238 ~~GA----dDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
+.|+ .|+-+|++++|.+++.|.+.. ..++.+|.|+|..+||.| .|+++++.+
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~----~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHP----EIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCC----CCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 2355 789999999999999997642 235678999999999998 899988643
No 31
>PRK07473 carboxypeptidase; Provisional
Probab=98.04 E-value=2.7e-05 Score=83.40 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=75.8
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCC------C-------CCCCCccchhHHHHHHHHHHHHhhcccCCCCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~------~-------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~ 267 (561)
.|+++.++|.+. ..|+|++.+|+|+++.. | -++.|+.|.-+|++++|..++.|.+.. .
T Consensus 62 ~~~~~~~~~~~~-----~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~----~ 132 (376)
T PRK07473 62 DCVRARFPHPRQ-----GEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAG----I 132 (376)
T ss_pred CeEEEEeCCCCC-----CCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcC----C
Confidence 589999875321 35799999999999431 1 146899999999999999999997643 2
Q ss_pred CCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccc
Q 008568 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (561)
Q Consensus 268 ~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~i 312 (561)
.++.+|.|+++.+||.|..|++.++++. ....+++|+.|--
T Consensus 133 ~~~~~v~~~~~~dEE~g~~g~~~~~~~~----~~~~d~~iv~ep~ 173 (376)
T PRK07473 133 TTPLPITVLFTPDEEVGTPSTRDLIEAE----AARNKYVLVPEPG 173 (376)
T ss_pred CCCCCEEEEEeCCcccCCccHHHHHHHh----hccCCEEEEeCCC
Confidence 3456899999999999999999999862 1234678887754
No 32
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.02 E-value=1.8e-05 Score=85.67 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=65.4
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++++++|.++ ..|.|++.+|+|+++. .|.-|+-+|+|++|++++.|.+.. .+++++|.|+++..
T Consensus 60 ~nl~a~~~g~~~-----~~~~l~l~gH~DtVp~-----~g~~d~k~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 125 (413)
T PRK09290 60 GNLFGRLEGRDP-----DAPAVLTGSHLDTVPN-----GGRFDGPLGVLAGLEAVRTLNERG----IRPRRPIEVVAFTN 125 (413)
T ss_pred CcEEEEecCCCC-----CCCEEEEecCccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEcC
Confidence 599999977431 2478999999999976 345577889999999999997643 34678999999999
Q ss_pred CCC-----CCcchHHHHHhc
Q 008568 281 GPY-----NYNGTHKWLRSF 295 (561)
Q Consensus 281 Ee~-----g~~GS~~~v~~~ 295 (561)
||. |..|++++++.+
T Consensus 126 EE~g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 126 EEGSRFGPAMLGSRVFTGAL 145 (413)
T ss_pred CccccccCccccHHHHHccc
Confidence 998 578999888653
No 33
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.00 E-value=3e-05 Score=82.50 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=74.8
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|+++.+ |.+ .|.|++.+|+|+++..+ | .+.|+.|+-.|++++|+.++.|.+..
T Consensus 48 ~~~l~a~~-g~~-------~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~ 119 (377)
T PRK08588 48 RANLVAEI-GSG-------SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQG 119 (377)
T ss_pred CceEEEEe-CCC-------CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcC
Confidence 46999988 421 37999999999998631 1 25689999999999999999997643
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
..++.+|.|+|..+||.|..|+++++++- ..++++++|+.+-
T Consensus 120 ----~~~~~~i~l~~~~dEE~g~~G~~~~~~~~---~~~~~d~~i~~ep 161 (377)
T PRK08588 120 ----QLLNGTIRLLATAGEEVGELGAKQLTEKG---YADDLDALIIGEP 161 (377)
T ss_pred ----CCCCCcEEEEEEcccccCchhHHHHHhcC---ccCCCCEEEEecC
Confidence 34678999999999999999999999861 2345666666553
No 34
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=97.98 E-value=2e-05 Score=84.94 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=65.1
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++++++|.++ ..|.|++.+|+|+++. .|.-|+-.|++++|++++.|++.. ..++.+|.|+++.+
T Consensus 63 ~n~~a~~~g~~~-----~~~~l~l~~H~DtVp~-----~g~~dgk~gvaa~l~a~~~l~~~~----~~~~~~v~~~~~~d 128 (412)
T PRK12893 63 GNLFGRRAGTDP-----DAPPVLIGSHLDTQPT-----GGRFDGALGVLAALEVVRTLNDAG----IRTRRPIEVVSWTN 128 (412)
T ss_pred CcEEEEeCCCCC-----CCCEEEEEecccCCCC-----CCcccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEEcc
Confidence 499999987442 2579999999999975 344567789999999999998743 34678999999999
Q ss_pred CCCC-----CcchHHHHHh
Q 008568 281 GPYN-----YNGTHKWLRS 294 (561)
Q Consensus 281 Ee~g-----~~GS~~~v~~ 294 (561)
||.| ..|++.+...
T Consensus 129 EE~g~~~~~~~G~~~~~~~ 147 (412)
T PRK12893 129 EEGARFAPAMLGSGVFTGA 147 (412)
T ss_pred ccccccccccccHHHHhCc
Confidence 9986 8899988755
No 35
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.98 E-value=3.1e-05 Score=83.89 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=62.8
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCC-CC------------------------------------------
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-PA------------------------------------------ 236 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-~~------------------------------------------ 236 (561)
..||+|+++|.... +.|.|+++||+||+... .+
T Consensus 57 ~gnv~~~~~~~~~~----~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 57 NGYVIATIPSNTDK----DVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred ceEEEEEecCCCCC----CCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 68999999885421 24899999999998630 00
Q ss_pred ----CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHH
Q 008568 237 ----LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (561)
Q Consensus 237 ----~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~ 293 (561)
.-.|+ |+-+|+|++|++++.|.+.. ..++.+|.|+|+.+||.| .|++++..
T Consensus 133 ~~g~~l~G~-D~KgglAa~l~A~~~L~e~~----~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLGA-DDKAGIAEIMTAADYLINHP----EIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeecc-cCHHHHHHHHHHHHHHHhCC----CCCCCCEEEEEECcccCC-cCcchhhh
Confidence 11464 56679999999999997642 124568999999999988 59987754
No 36
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=97.97 E-value=8.7e-05 Score=76.36 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=115.6
Q ss_pred CCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchh
Q 008568 219 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQR 298 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~ 298 (561)
+..|+++||.-|=++ |+||-||+|.+.-||+.++.+. .+|+-.|+|-. +-+||-.|+.....
T Consensus 178 ~~eiLlst~lCHPSm-------aNdn~SG~all~~lak~l~~~k------trysYRfvf~P----~TiGsi~wLsrnee- 239 (435)
T COG4310 178 KDEILLSTYLCHPSM-------ANDNLSGLALLTFLAKALKSLK------TRYSYRFVFAP----ETIGSIVWLSRNEE- 239 (435)
T ss_pred cceeeeeecccChhh-------ccCccchHHHHHHHHHHHHhcc------ceeeEEEEecc----cccchhhhHhcchh-
Confidence 458999999999765 7999999999999999998875 36777888766 56899999987432
Q ss_pred hhcCeeEEEEeccccCCCCceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCC--CCcccchhcC--
Q 008568 299 LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRV--AWEHEQFSRL-- 374 (561)
Q Consensus 299 ~l~~I~~vlnLD~iG~~~~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~--~sdHe~F~~~-- 374 (561)
.+++|..-+-+-++|.++..-|.++-+. ++.+.++. ..+.++-+-.+. . .+.+ .+|-..|...
T Consensus 240 ~lkhvk~GlVlsClGD~g~~nykrtrrg--na~iDki~---~~tl~~~~s~~~-------~-~dF~p~G~DERQf~sPg~ 306 (435)
T COG4310 240 CLKHVKHGLVLSCLGDGGGPNYKRTRRG--NALIDKIA---LHTLKHCGSNFK-------A-ADFLPYGSDERQFCSPGF 306 (435)
T ss_pred HHhhhhcceEEEEecCCCCccceecccc--chHHHHHH---HHHHhcCCcCce-------e-eecccCCCchhhccCCCc
Confidence 4678998899999998766667665332 22122222 111122121121 1 1233 3577788874
Q ss_pred CCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 008568 375 RVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLARH 423 (561)
Q Consensus 375 gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa~~ 423 (561)
++|...+-.... ..+..+|+..|+.+-|+.+.|+...+.+-|.+...
T Consensus 307 NLpvg~~~Rs~y--G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~l 353 (435)
T COG4310 307 NLPVGGLQRSRY--GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNL 353 (435)
T ss_pred CCchhhhhHhhc--CCCccccCccccccccCHHHHHHHHHHHHHHHHHH
Confidence 567766643211 11224478899999999999998887776665443
No 37
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=97.96 E-value=2.6e-05 Score=84.06 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=64.2
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.|++++++|.++ .|.|++.+|+|+++.. |-.|+-.|++++|++++.|.+.. .+++.+|.|+++..
T Consensus 62 ~nl~a~~~g~~~------~~~l~l~gH~DtVp~~-----g~~dg~~Gvaa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (412)
T PRK12892 62 GNVFGRLPGPGP------GPALLVGSHLDSQNLG-----GRYDGALGVVAGLEAARALNEHG----IATRHPLDVVAWCD 126 (412)
T ss_pred CcEEEEecCCCC------CCeEEEEccccCCCCC-----CcccchHHHHHHHHHHHHHHHcC----CCCCCCeEEEEecC
Confidence 499999988542 3789999999999762 33456679999999999998643 35678999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 008568 281 GPY-----NYNGTHKWLRS 294 (561)
Q Consensus 281 Ee~-----g~~GS~~~v~~ 294 (561)
||. ++.||++++..
T Consensus 127 EE~~~~~~~~~Gs~~~~~~ 145 (412)
T PRK12892 127 EEGSRFTPGFLGSRAYAGR 145 (412)
T ss_pred cccccccCccccHHHHHcC
Confidence 998 57899999864
No 38
>PRK07338 hypothetical protein; Provisional
Probab=97.93 E-value=4.5e-05 Score=81.95 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=73.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCC--C---------C--CCCCccchhHHHHHHHHHHHHhhcccCCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--P---------A--LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--~---------~--~~~GAdDNaSGvaaLLELAR~fs~l~~~~~ 266 (561)
..|+++++.|.. .+.|++.+|||+++.. | + ++.|+.|.-+|++++|+.++.|.+..
T Consensus 80 ~~nl~a~~~~~~-------~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~---- 148 (402)
T PRK07338 80 GPALHVSVRPEA-------PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSP---- 148 (402)
T ss_pred CCeEEEEECCCC-------CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcC----
Confidence 369999986522 3479999999999752 1 0 35699999999999999999997532
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 267 ~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
..++.+|.|+|..+||.|..|++.++++.. .+..++++++-
T Consensus 149 ~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~----~~~~~~i~~ep 189 (402)
T PRK07338 149 LADKLGYDVLINPDEEIGSPASAPLLAELA----RGKHAALTYEP 189 (402)
T ss_pred CCCCCCEEEEEECCcccCChhhHHHHHHHh----ccCcEEEEecC
Confidence 245678999999999999999999998632 23456666654
No 39
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.91 E-value=5.3e-05 Score=81.98 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=71.6
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-C--------------CCCCccchhHHHHHHHHHHHHhhcccCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEVARLFSLLYSN 264 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~ 264 (561)
-.|++|+++|.+ ..|.|++.+|+|+++... | ++.|+.|+-+|++++|..++.|++..
T Consensus 71 ~~nlia~~~g~~------~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~-- 142 (427)
T PRK13013 71 RWNLVARRQGAR------DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVY-- 142 (427)
T ss_pred cceEEEEecCCC------CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhC--
Confidence 469999997743 247899999999998621 1 24699999999999999999998753
Q ss_pred CCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 265 ~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
.+++.+|.|++..+||.|-.|..+|+.+.......+++++|+.+
T Consensus 143 --~~~~~~v~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~e 186 (427)
T PRK13013 143 --PDFAGSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVIIPE 186 (427)
T ss_pred --CCCCccEEEEEEeccccCChhHHHHHHhcCCccccCCCEEEEec
Confidence 24577999999999998765444444431110111456666655
No 40
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.89 E-value=4.4e-05 Score=82.59 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=69.2
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
...||+|+++|.++ .|+|++.+|+|+++..+ | ++.|+.|+-+|++++|..++.|.+.
T Consensus 79 ~~~nlia~~~g~~~------~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~ 152 (422)
T PRK06915 79 DSPNIVATLKGSGG------GKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIES 152 (422)
T ss_pred CCceEEEEEcCCCC------CCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHc
Confidence 35899999987442 47999999999998631 1 3579999999999999999999764
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
. ..++.+|.|+++.+||.|-.|+.+.+.+
T Consensus 153 ~----~~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 153 G----IELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred C----CCCCCcEEEEEecccccCCcchHHHHhc
Confidence 3 2456789999999999888899887764
No 41
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.87 E-value=6.3e-05 Score=79.29 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=67.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
..||+|.+.|.+ .|+|++.||+|+++..+ | .+.|+.|+=+|++++|.+++.|.+..
T Consensus 46 ~~nl~~~~~~~~-------~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~- 117 (364)
T TIGR01892 46 KSNLVAVIGPSG-------AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ- 117 (364)
T ss_pred cccEEEEecCCC-------CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-
Confidence 579999985522 46899999999998631 1 25689999999999999999997632
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhc
Q 008568 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~ 295 (561)
.+.+|.|+|..+||.|..|+++++++.
T Consensus 118 -----~~~~v~~~~~~~EE~g~~G~~~~~~~~ 144 (364)
T TIGR01892 118 -----LKKPLHLALTADEEVGCTGAPKMIEAG 144 (364)
T ss_pred -----cCCCEEEEEEeccccCCcCHHHHHHhc
Confidence 356899999999999999999999874
No 42
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.86 E-value=4.6e-05 Score=84.20 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=69.3
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC------C--------------CCCCcc---chhHHHHHHHHHHHH
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP------A--------------LSVGSD---SNGSGVVALLEVARL 257 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~------~--------------~~~GAd---DNaSGvaaLLELAR~ 257 (561)
.|+++.++|.... ...|.|++.+|+|+++... | +++|+. |+..|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~---~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~ 123 (477)
T TIGR01893 47 GNVLIRKPATPGY---ENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED 123 (477)
T ss_pred CeEEEEEcCCCCC---CCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc
Confidence 5999999885421 1358999999999998632 1 256774 889999999998764
Q ss_pred hhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccc
Q 008568 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (561)
Q Consensus 258 fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~i 312 (561)
.. .+..+|.++|+.+||.|+.||+++.... -...+++|.|..
T Consensus 124 ---~~-----~~~~~i~~~~~~dEE~g~~Gs~~l~~~~-----~~~~~~~~~d~~ 165 (477)
T TIGR01893 124 ---NN-----LKHPPLELLFTVDEETGMDGALGLDENW-----LSGKILINIDSE 165 (477)
T ss_pred ---CC-----CCCCCEEEEEEeccccCchhhhhcChhh-----cCCcEEEEecCC
Confidence 11 1345899999999999999999887541 122456666643
No 43
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.86 E-value=0.00029 Score=75.15 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred CccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCC---
Q 008568 240 GSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN--- 316 (561)
Q Consensus 240 GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~--- 316 (561)
-|-||-.|+++|+|++|.++.. .+++++.|+|+..||.|+.|++.-...++| +..|.+|..-..+
T Consensus 175 kalDdR~g~a~l~e~l~~l~~~------~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p------D~aI~vDv~~~~d~~~ 242 (350)
T TIGR03107 175 KAWDNRYGVLMILELLESLKDQ------ELPNTLIAGANVQEEVGLRGAHVSTTKFNP------DIFFAVDCSPAGDIYG 242 (350)
T ss_pred eccccHHHHHHHHHHHHHhhhc------CCCceEEEEEEChhhcCchhhhhHHhhCCC------CEEEEEecCCcCCCCC
Confidence 4679999999999999999642 357899999999999999999965555443 3566666543221
Q ss_pred --------CceeEEecc-CCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcc--cchhcCCCeEEEEeccC
Q 008568 317 --------NELWIHVSK-PPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEH--EQFSRLRVTAATLSELS 385 (561)
Q Consensus 317 --------~~l~lhvs~-~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdH--e~F~~~gIPAvtls~~~ 385 (561)
+..-....+ +..+ ..+.+.+.++|++.+++.+.... . -.+|- ..|+..|+|++.++-.
T Consensus 243 ~~~~~lg~Gp~i~~~D~~~i~~---~~l~~~l~~~A~~~~I~~Q~~~~-----~--gGtDa~~~~~~~~Gvpt~~i~ip- 311 (350)
T TIGR03107 243 DQGGKLGEGTLLRFFDPGHIML---PRMKDFLLTTAEEAGIKYQYYVA-----K--GGTDAGAAHLKNSGVPSTTIGVC- 311 (350)
T ss_pred CCccccCCCceEEEecCCCCCC---HHHHHHHHHHHHHcCCCcEEecC-----C--CCchHHHHHHhCCCCcEEEEccC-
Confidence 111112211 1122 46778888899998888775211 0 12333 3678899999999752
Q ss_pred CCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 008568 386 AAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAR 422 (561)
Q Consensus 386 ~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa~ 422 (561)
. ++-||.. +.++.+.+...++++.+.+..
T Consensus 312 ~-----Ry~Hs~~---e~i~~~D~~~~~~Ll~~~i~~ 340 (350)
T TIGR03107 312 A-----RYIHSHQ---TLYSIDDFLAAQAFLQAIVKK 340 (350)
T ss_pred c-----ccccChh---heeeHHHHHHHHHHHHHHHHh
Confidence 1 1235666 677888888777766555543
No 44
>PRK08201 hypothetical protein; Provisional
Probab=97.84 E-value=6.6e-05 Score=82.29 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=74.4
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..||++.+.|.+ ..|+|++.+|+|+++..+ | ++.|+.|+-+|++++|++++.|.+..
T Consensus 66 ~~~l~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~ 139 (456)
T PRK08201 66 HPIVYADWLHAP------GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVE 139 (456)
T ss_pred CCEEEEEecCCC------CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhc
Confidence 358999887632 257999999999987632 1 24699999999999999999997643
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
..++.+|.|+++..||.|-.|+.+|+++.... . ..+++|+.|
T Consensus 140 ----~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~-~-~~d~~ii~e 181 (456)
T PRK08201 140 ----GTLPVNVKFCIEGEEEIGSPNLDSFVEEEKDK-L-AADVVLISD 181 (456)
T ss_pred ----CCCCCCEEEEEEcccccCCccHHHHHHhhHHh-c-cCCEEEEeC
Confidence 23467999999999999999999999863211 1 124566665
No 45
>PRK07907 hypothetical protein; Provisional
Probab=97.83 E-value=8.5e-05 Score=81.28 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=73.8
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|++++++|.+ ..|+|++.+|+|+++..+ | ++.|+.|+-+|++++|..++.| . .
T Consensus 70 ~~nl~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~-~ 141 (449)
T PRK07907 70 APAVIGTRPAPP------GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G-G 141 (449)
T ss_pred CCEEEEEecCCC------CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c-c
Confidence 469999997632 257999999999998631 1 2569999999999999999988 2 1
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
+++.+|.|++++.||.|-.|+++++++... .+ +.+++|+.|.
T Consensus 142 -----~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~-~~-~~d~~iv~E~ 183 (449)
T PRK07907 142 -----DLPVGVTVFVEGEEEMGSPSLERLLAEHPD-LL-AADVIVIADS 183 (449)
T ss_pred -----CCCCcEEEEEEcCcccCCccHHHHHHhchH-hh-cCCEEEEecC
Confidence 346889999999999888999999986321 11 2356676664
No 46
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=97.83 E-value=9.5e-05 Score=78.49 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=68.6
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-----------C--CCCCccchhHHHHHHHHHHHHhhcccCCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------A--LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~--~~~GAdDNaSGvaaLLELAR~fs~l~~~~~ 266 (561)
..|+++++.|.+ ..|.|++.+|+|+++..+ + .+.|+ .+|++++|.+++.|.+..
T Consensus 43 ~~~vva~~~~~~------~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~---- 109 (363)
T TIGR01891 43 ATGVVATIGGGK------PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLA---- 109 (363)
T ss_pred CcEEEEEEeCCC------CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhch----
Confidence 478999987632 147899999999997522 1 23454 268899999999887643
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 267 ~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
.+++.+|.|+|+.+||.+ .|+++++++. ..++++++|+++-
T Consensus 110 ~~~~~~i~~~~~~dEE~~-~G~~~~~~~~---~~~~~d~~i~~e~ 150 (363)
T TIGR01891 110 DLLEGTVRLIFQPAEEGG-GGATKMIEDG---VLDDVDAILGLHP 150 (363)
T ss_pred hhCCceEEEEEeecCcCc-chHHHHHHCC---CCCCcCEEEEECC
Confidence 245679999999999986 7999888752 2355667777654
No 47
>PRK08262 hypothetical protein; Provisional
Probab=97.81 E-value=8.8e-05 Score=82.01 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=69.1
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-----C--------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----~--------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
.|+++.++|.++ ..|+|++.+|+|+++..+ | ++.|+.|+-+|++++|.+++.+.+.
T Consensus 98 ~~vv~~~~g~~~-----~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~ 172 (486)
T PRK08262 98 HSLLYTWKGSDP-----SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQ 172 (486)
T ss_pred ccEEEEEECCCC-----CCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHc
Confidence 578888877442 247999999999998631 1 2569999999999999999999764
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhc
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~ 295 (561)
. ..++.+|.|+|..+||.|-.|++++++.+
T Consensus 173 ~----~~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 173 G----FQPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred C----CCCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 3 34678999999999998888999988753
No 48
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.80 E-value=6.1e-05 Score=78.87 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCEEEEEeccCCCCCCCC--------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHH
Q 008568 219 LPTIAIVASYDTFGAAPA--------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHK 290 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~~--------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~ 290 (561)
.|.|++.+|+|+++.... ++.|+.|+-+|++++|++++.|.... ++.+|.|+|+.+||.|..|++.
T Consensus 55 ~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~------~~~~v~~~~~~dEE~g~~G~~~ 128 (347)
T PRK08652 55 KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKEF------EDLNVGIAFVSDEEEGGRGSAL 128 (347)
T ss_pred CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhcc------cCCCEEEEEecCcccCChhHHH
Confidence 368999999999986321 46899999999999999999987422 3468999999999998889999
Q ss_pred HHHhcchhhhcCeeEEEEecc
Q 008568 291 WLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 291 ~v~~~~~~~l~~I~~vlnLD~ 311 (561)
+++... .+++|+.+-
T Consensus 129 ~~~~~~------~d~~i~~ep 143 (347)
T PRK08652 129 FAERYR------PKMAIVLEP 143 (347)
T ss_pred HHHhcC------CCEEEEecC
Confidence 987632 146676664
No 49
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.73 E-value=0.00012 Score=77.33 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=70.5
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCC-C-----C--CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCcee
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-P-----A--LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-~-----~--~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~n 272 (561)
.|++|++.| ..|+|++.+|||+++.. | + ++.|+.|+-+|++++|+.++.| . ..++++
T Consensus 49 ~n~i~~~~~--------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~------~~~~~~ 113 (348)
T PRK04443 49 GNARGPAGD--------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E------ALVRAR 113 (348)
T ss_pred CcEEEEcCC--------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c------ccCCCC
Confidence 588888732 13799999999999752 2 1 4689999999999999999998 3 135789
Q ss_pred EEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 273 IlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
|.|+++.+||.|..|..+++.+. . ..+++|+.|
T Consensus 114 i~~~~~~dEE~g~~~~~~~l~~~----~-~~d~~iv~E 146 (348)
T PRK04443 114 VSFVGAVEEEAPSSGGARLVADR----E-RPDAVIIGE 146 (348)
T ss_pred EEEEEEcccccCChhHHHHHHhc----c-CCCEEEEeC
Confidence 99999999999988888888752 1 356777776
No 50
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.72 E-value=0.00013 Score=79.22 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=69.1
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
...||+|.++|.++ +.|+|++.+|+|+++..+ | .+.|+.|+-+|++++|..++.|.+.
T Consensus 82 ~~~nl~a~~~g~~~-----~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~ 156 (427)
T PRK06837 82 GAPNVVGTYRPAGK-----TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAA 156 (427)
T ss_pred CCceEEEEecCCCC-----CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHc
Confidence 36899999987542 357999999999998742 1 1459999999999999999999764
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
. ..++++|.|+++.+||.+-.|+.+.+..
T Consensus 157 ~----~~~~~~i~~~~~~dEE~~g~g~~~~~~~ 185 (427)
T PRK06837 157 G----LAPAARVHFQSVIEEESTGNGALSTLQR 185 (427)
T ss_pred C----CCCCCcEEEEEEeccccCCHhHHHHHhc
Confidence 2 3567899999999999887888776653
No 51
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.68 E-value=0.0006 Score=72.97 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=71.9
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCC-----------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA-----------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~-----------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
.-.+++-+++|+++ +.|-|++.+|.|.++.+.. .+.||.|.=+-.++.||.+|.|..-
T Consensus 73 ~~~~~l~T~~GS~P-----~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~ 147 (420)
T KOG2275|consen 73 GKYVLLYTWLGSDP-----ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKAS 147 (420)
T ss_pred ceeEEEEEeeCCCC-----CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhc
Confidence 35678888899886 4899999999999998532 2468988888888899999998753
Q ss_pred cCCCCCCCceeEEEEEeCCCCCC-CcchHHHHHh
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g-~~GS~~~v~~ 294 (561)
+-+|+|+|...|.-+||.| ..|.+-|+..
T Consensus 148 ----g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~ 177 (420)
T KOG2275|consen 148 ----GFKPKRTIHLSFVPDEEIGGHIGMKEFAKT 177 (420)
T ss_pred ----CCCcCceEEEEecCchhccCcchHHHHhhh
Confidence 3569999999999999976 9999999983
No 52
>PRK07079 hypothetical protein; Provisional
Probab=97.65 E-value=0.00021 Score=78.64 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=74.9
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C----------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A----------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~----------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
..||++++.|.+ ..|.|++.+|+|+++..+ | ++.|+.|+-+|+++.|..++.+.+.
T Consensus 72 ~~~vva~~~~~~------~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~ 145 (469)
T PRK07079 72 GPFLIAERIEDD------ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA 145 (469)
T ss_pred CCEEEEEeCCCC------CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh
Confidence 468999986532 257999999999998521 1 2469999999999999999987542
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
. +.+++++|.|++...||.|-.|++.+++++... -..+++|+.|
T Consensus 146 ~---~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~--~~~d~~iv~e 189 (469)
T PRK07079 146 R---GGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREA--LAADVLIASD 189 (469)
T ss_pred c---CCCCCCCEEEEEECccccCCccHHHHHHHhHHh--cCCCEEEEeC
Confidence 1 135678999999999999999999999874211 1235666655
No 53
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.65 E-value=0.00021 Score=75.86 Aligned_cols=98 Identities=23% Similarity=0.247 Sum_probs=71.3
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|+++.+ |. ..|.|++.+|+|+++... | ++.|+.|+-+|++++|+.++.|.+..
T Consensus 47 ~~n~~~~~-g~-------~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~ 118 (375)
T PRK13009 47 VKNLWARR-GT-------EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAH 118 (375)
T ss_pred CcEEEEEe-cC-------CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhc
Confidence 46999987 42 147999999999998632 1 24699899999999999999886642
Q ss_pred CCCCCCCceeEEEEEeCCCCCC-CcchHHHHHhcchhhhcCeeEEEEec
Q 008568 263 SNPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g-~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
..++.+|.|+++.+||.+ ..|++.+++.+... ....+++|+.+
T Consensus 119 ----~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~-~~~~d~~i~~e 162 (375)
T PRK13009 119 ----PDHKGSIAFLITSDEEGPAINGTVKVLEWLKAR-GEKIDYCIVGE 162 (375)
T ss_pred ----CCCCceEEEEEEeecccccccCHHHHHHHHHHc-CcCCCEEEEcC
Confidence 246789999999999974 46999988753211 12345565543
No 54
>PRK13004 peptidase; Reviewed
Probab=97.63 E-value=0.00026 Score=76.22 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=70.2
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
.|++|++.|. .|+|++.+|+|+++..+ | ++.|+.|+-+|++++|.+++.|.+..
T Consensus 59 ~n~~a~~~~~--------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 129 (399)
T PRK13004 59 GNVLGYIGHG--------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLG- 129 (399)
T ss_pred CeEEEEECCC--------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcC-
Confidence 4899988541 26999999999998621 1 24689899999999999999997743
Q ss_pred CCCCCCceeEEEEEeCCCCC-CCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 264 NPKTRGRYNILFGLTSGGPY-NYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~-g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
..++.+|.|+++.+||. +-.|+++++++- .. ..+++|+.+.
T Consensus 130 ---~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~---~~-~~d~~i~~e~ 171 (399)
T PRK13004 130 ---LDDEYTLYVTGTVQEEDCDGLCWRYIIEED---KI-KPDFVVITEP 171 (399)
T ss_pred ---CCCCCeEEEEEEcccccCcchhHHHHHHhc---CC-CCCEEEEccC
Confidence 34678999999999884 456888888751 11 2355666554
No 55
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.63 E-value=0.00017 Score=76.78 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=66.7
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
..||+|++.|. ..|+|++.+|+|+++..+ | .+.|+.|+=.|++++|++++.|.+.
T Consensus 52 ~~nv~a~~~~~-------~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-- 122 (385)
T PRK07522 52 KANLFATIGPA-------DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-- 122 (385)
T ss_pred cccEEEEeCCC-------CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--
Confidence 47999998542 147999999999998631 1 2568988888999999999999763
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhc
Q 008568 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~ 295 (561)
.++++|.|+|+.+||.|..|+++++++.
T Consensus 123 ----~~~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 123 ----PLRRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred ----CCCCCEEEEEEeccccCCccHHHHHHHh
Confidence 2457899999999999889999999763
No 56
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.62 E-value=0.00028 Score=74.17 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCC----------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCc
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA----------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~----------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~ 270 (561)
.|+++++.+ + +.+.|++.+|+|+++..+. .+.|+.|+-+|+|++|.+++.|.. ++
T Consensus 50 ~~~~~~~~~-~------~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~--------~~ 114 (352)
T PRK13007 50 NSVVARTDL-G------RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE--------PA 114 (352)
T ss_pred CeEEEEccC-C------CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc--------cC
Confidence 589999842 1 1347999999999986421 468999999999999999999832 46
Q ss_pred eeEEEEEeCCCCCCC--cchHHHHHhcchhhhcCeeEEEEecc
Q 008568 271 YNILFGLTSGGPYNY--NGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 271 ~nIlF~~~~gEe~g~--~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
++|.|+++..||.+- .|++.++..... ..+.+++|+.|-
T Consensus 115 ~~i~~~~~~~EE~~~~~~G~~~~~~~~~~--~~~~d~~i~~ep 155 (352)
T PRK13007 115 HDLTLVFYDCEEVEAEANGLGRLAREHPE--WLAGDFAILLEP 155 (352)
T ss_pred CCeEEEEEecccccCCcccHHHHHHhccc--ccCCCEEEEecC
Confidence 789999999999753 588888875321 234577787764
No 57
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.62 E-value=0.00077 Score=70.16 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=89.3
Q ss_pred ccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccc------cC
Q 008568 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV------GS 314 (561)
Q Consensus 241 AdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~i------G~ 314 (561)
|-||-.|+++|+|++|.++.. ..++++.|+|+..||.|+.|++.....+.| +..|++|.. |.
T Consensus 132 alDdR~g~~~lle~l~~l~~~------~~~~~v~~v~tvqEEvG~rGA~~aa~~i~P------D~ai~vD~~~a~d~~~~ 199 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK------ELDVDVYFVFTVQEEVGLRGAKTAAFRIKP------DIAIAVDVTPAGDTPGS 199 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS------S-SSEEEEEEESSCTTTSHHHHHHHHHH-C------SEEEEEEEEEESSSTTS
T ss_pred eCCchhHHHHHHHHHHHHhhc------CCCceEEEEEEeeeeecCcceeecccccCC------CEEEEEeeeccCCCCCC
Confidence 568999999999999999763 235999999999999999999977776433 344454443 22
Q ss_pred CCC-------ceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccchhc--CCCeEEEEeccC
Q 008568 315 WNN-------ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSR--LRVTAATLSELS 385 (561)
Q Consensus 315 ~~~-------~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~--~gIPAvtls~~~ 385 (561)
... ..-.+..+.+- .-..+.+.+.++|++.+++.+.... ....+|-..|.. .|+|+..++-.
T Consensus 200 ~~~~~~lG~Gp~i~~~D~~~i--~~~~l~~~l~~~A~~~~Ip~Q~~~~------~~ggTDa~~~~~~~~Gi~t~~i~iP- 270 (292)
T PF05343_consen 200 DEKEQGLGKGPVIRVGDSSMI--PNPKLVDKLREIAEENGIPYQREVF------SGGGTDAGAIQLSGGGIPTAVISIP- 270 (292)
T ss_dssp TTTTSCTTS-EEEEEEETTEE--SHHHHHHHHHHHHHHTT--EEEEEE------SSSSSTHHHHHTSTTSSEEEEEEEE-
T ss_pred chhhccCCCCcEEEEccCCCC--CCHHHHHHHHHHHHHcCCCeEEEec------CCcccHHHHHHHcCCCCCEEEEecc-
Confidence 211 11222222221 1246778888999998888876311 122455555554 69999999752
Q ss_pred CCCCccccCCCCCCCcCCCCHHHHHHH
Q 008568 386 AAPELLESTGGLLDSRHFVDETSFIRS 412 (561)
Q Consensus 386 ~~~d~~~~r~si~Dt~d~id~~~L~~~ 412 (561)
.++.||.. +.++.+.+...
T Consensus 271 -----~ry~Hs~~---e~~~~~Di~~~ 289 (292)
T PF05343_consen 271 -----CRYMHSPV---EVIDLDDIEAT 289 (292)
T ss_dssp -----EBSTTSTT---EEEEHHHHHHH
T ss_pred -----cccCCCcc---eEEEHHHHHHH
Confidence 22346665 45566555543
No 58
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.61 E-value=0.00018 Score=76.65 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=65.0
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
-.|++|++ |.+ .+.|++.+|+|+++... | .+.|+.|+=+|++++|+.++.|.+.
T Consensus 60 ~~nvia~~-g~~-------~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-- 129 (383)
T PRK05111 60 KFNLLASL-GSG-------EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-- 129 (383)
T ss_pred CceEEEEe-CCC-------CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--
Confidence 47999998 522 24799999999997531 1 3568888888999999999998752
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
..+.+|.|++..+||.|..|+++++++
T Consensus 130 ----~~~~~i~~~~~~~EE~g~~G~~~~~~~ 156 (383)
T PRK05111 130 ----KLKKPLYILATADEETSMAGARAFAEA 156 (383)
T ss_pred ----CCCCCeEEEEEeccccCcccHHHHHhc
Confidence 235689999999999998999999986
No 59
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.60 E-value=0.00026 Score=75.73 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=70.5
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-C---------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A---------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~---------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
..|+++.. |. ..|+|++.+|+|+++... + .+.|+.|+-.|++++|++++.+.+.
T Consensus 63 ~~~~~~~~-~~-------~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~-- 132 (394)
T PRK08651 63 RPNLIARR-GS-------GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPA-- 132 (394)
T ss_pred cceEEEEe-CC-------CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhc--
Confidence 46788764 21 137999999999998632 1 2468899999999999999998652
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecccc
Q 008568 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG 313 (561)
. +.+|.|++..+||.|-.|+++++++.. ...+++|+.|--|
T Consensus 133 ----~-~~~v~~~~~~~EE~g~~G~~~~~~~~~----~~~d~~i~~~~~~ 173 (394)
T PRK08651 133 ----G-DGNIELAIVPDEETGGTGTGYLVEEGK----VTPDYVIVGEPSG 173 (394)
T ss_pred ----C-CCCEEEEEecCccccchhHHHHHhccC----CCCCEEEEecCCC
Confidence 1 678999999999988899999998632 1245566555433
No 60
>PRK09864 putative peptidase; Provisional
Probab=97.59 E-value=0.001 Score=71.15 Aligned_cols=153 Identities=8% Similarity=0.020 Sum_probs=97.6
Q ss_pred CccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCC---
Q 008568 240 GSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN--- 316 (561)
Q Consensus 240 GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~--- 316 (561)
=|-||-.|+++|+|++|.++. +++++.|+|+..||.|+-|++.-...++| +.+|.+|+.-..+
T Consensus 172 kalDnR~g~~~lle~l~~l~~--------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P------DiaIavDvt~~~d~p~ 237 (356)
T PRK09864 172 KALDNRIGCAMMAELLQTVNN--------PEITLYGVGSVEEEVGLRGAQTSAEHIKP------DVVIVLDTAVAGDVPG 237 (356)
T ss_pred EeCccHHHHHHHHHHHHHhhc--------CCCeEEEEEEcchhcchHHHHHHHhcCCC------CEEEEEecccCCCCCC
Confidence 467899999999999999843 46899999999999999999966665543 3466666543210
Q ss_pred ------------CceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccchhcCCCeEEEEecc
Q 008568 317 ------------NELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSEL 384 (561)
Q Consensus 317 ------------~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~~gIPAvtls~~ 384 (561)
+..-....+.+- .-..+.+.+.++|++.+++++.....-. . .-.+...+.+.|+|+..++=
T Consensus 238 ~~~~~~~~~lG~Gp~i~~~D~~~i--~~~~l~~~l~~~A~~~~Ip~Q~~~~~~g-g---TDa~~i~~~~~Gvpt~~isi- 310 (356)
T PRK09864 238 IDNIKYPLKLGQGPGLMLFDKRYF--PNQKLVAALKSCAAHNDLPLQFSTMKTG-A---TDGGRYNVMGGGRPVVALCL- 310 (356)
T ss_pred CcccccccccCCCCeEEEccCCcc--CCHHHHHHHHHHHHHcCCCceEEEcCCC-C---chHHHHHHhCCCCcEEEEee-
Confidence 111101111110 1246778888899998888775321101 1 11234456678999999974
Q ss_pred CCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 008568 385 SAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLA 421 (561)
Q Consensus 385 ~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa 421 (561)
+. ++-||.. +-++.+.+...++++.+.+.
T Consensus 311 P~-----RY~Hs~~---e~~~~~D~e~~~~Ll~~~~~ 339 (356)
T PRK09864 311 PT-----RYLHANS---GMISKADYDALLTLIRDFLT 339 (356)
T ss_pred cc-----CcCCCcc---eEeEHHHHHHHHHHHHHHHH
Confidence 22 2336666 56777777776666655443
No 61
>PRK06446 hypothetical protein; Provisional
Probab=97.56 E-value=0.00022 Score=77.82 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=67.2
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhccc
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLY 262 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~ 262 (561)
..|+++++.+ + ..|+|++.+|+|+++..+ | ++.||.|+-+|++++|...+.|.+..
T Consensus 50 ~~~lia~~~~-~------~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~ 122 (436)
T PRK06446 50 HPVVYGEINV-G------AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH 122 (436)
T ss_pred CCEEEEEecC-C------CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC
Confidence 4689999853 1 247999999999987532 1 24699999999999999998775432
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhc
Q 008568 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (561)
Q Consensus 263 ~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~ 295 (561)
.++.+|.|++...||.|-.|+++|++.+
T Consensus 123 -----~~~~~i~~~~~~dEE~g~~g~~~~l~~~ 150 (436)
T PRK06446 123 -----KLNVNVKFLYEGEEEIGSPNLEDFIEKN 150 (436)
T ss_pred -----CCCCCEEEEEEcccccCCHhHHHHHHHH
Confidence 3567999999999999999999999864
No 62
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=97.52 E-value=0.00034 Score=73.45 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=68.9
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--------CCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCcee
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~n 272 (561)
.|+++.. | . ..|+|++.+|||+++... -++.|+.|+-+|++++|+..+.|.+. ..+
T Consensus 40 ~~~~~~~-~--~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~--------~~~ 103 (336)
T TIGR01902 40 GNFILGK-G--D-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK--------GIK 103 (336)
T ss_pred CcEEEEe-C--C-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC--------CCc
Confidence 4777654 2 1 257999999999996421 14679999999999999999998642 357
Q ss_pred EEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecccc
Q 008568 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (561)
Q Consensus 273 IlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG 313 (561)
|+|+++.+||.|..|++++++... . .++|+.|--+
T Consensus 104 i~~~~~~dEE~g~~G~~~~~~~~~----~--~~~ii~ept~ 138 (336)
T TIGR01902 104 VIVSGLVDEESSSKGAREVIDKNY----P--FYVIVGEPSG 138 (336)
T ss_pred EEEEEEeCcccCCccHHHHHhhcC----C--CEEEEecCCC
Confidence 999999999999999999998732 1 2666666443
No 63
>PRK06156 hypothetical protein; Provisional
Probab=97.49 E-value=0.00056 Score=76.54 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=65.8
Q ss_pred CCEEEEEeccCCCCCCC--C-------------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEE
Q 008568 219 LPTIAIVASYDTFGAAP--A-------------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGL 277 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~--~-------------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~ 277 (561)
.|.|++.+|+|+++... | ++.|+.|+-.|++++|...+.|.+.. .+++.+|.|+|
T Consensus 109 ~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~----~~~~~~i~~~~ 184 (520)
T PRK06156 109 SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSG----LPLARRIELLV 184 (520)
T ss_pred CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcC----CCCCceEEEEE
Confidence 46899999999998621 1 24699999999999999998886632 34567999999
Q ss_pred eCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 278 TSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 278 ~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
+.+||.|..|+++|+++.. ...+++|+|.
T Consensus 185 ~~dEE~g~~G~~~~~~~~~-----~~~~~~~~D~ 213 (520)
T PRK06156 185 YTTEETDGDPLKYYLERYT-----PPDYNITLDA 213 (520)
T ss_pred ecccccCchhHHHHHHhcC-----CCCeEEeeCC
Confidence 9999999999999998631 2356677775
No 64
>PLN02280 IAA-amino acid hydrolase
Probab=97.49 E-value=0.00052 Score=76.14 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=68.2
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-----------CCCCCccchhHHHHHHHHHHHHhhcccCCCCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~ 268 (561)
..|++|++ |.+ ..|+|++.||+|+++... +...|.+.++ +++++|.++++|++.. ..
T Consensus 140 ~~~vva~~-g~~------~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~----~~ 207 (478)
T PLN02280 140 KTGIRAWI-GTG------GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSRE----HL 207 (478)
T ss_pred CCEEEEEE-CCC------CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhcc----cc
Confidence 56999998 533 137999999999998732 1223555566 9999999999997643 23
Q ss_pred CceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEe
Q 008568 269 GRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICL 309 (561)
Q Consensus 269 ~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnL 309 (561)
.+.+|.|+|..+||.|. |+++++++- ..+++++++++
T Consensus 208 ~~g~V~~if~pdEE~g~-Ga~~li~~g---~~~~~d~~~~~ 244 (478)
T PLN02280 208 LKGTVVLLFQPAEEAGN-GAKRMIGDG---ALDDVEAIFAV 244 (478)
T ss_pred CCceEEEEecccccccc-hHHHHHHCC---CCcCCCEEEEE
Confidence 56789999999999875 999998861 23445555553
No 65
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.47 E-value=0.00057 Score=73.12 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred eEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---------------------C------CCCCccchhHHHHHHHHH
Q 008568 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---------------------A------LSVGSDSNGSGVVALLEV 254 (561)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---------------------~------~~~GAdDNaSGvaaLLEL 254 (561)
||+|++.+ + +.|+|++.+|+|+++..+ . ++.|+.|+-+|++++|.+
T Consensus 42 nvva~~~~-~------~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a 114 (373)
T TIGR01900 42 NVLARTDF-G------KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHL 114 (373)
T ss_pred EEEEecCC-C------CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHH
Confidence 89998743 1 246899999999997521 0 246999999999999999
Q ss_pred HHHhhcccCCCCCCCceeEEEEEeCCCCCC--CcchHHHHHhcchhhhcCeeEEEEec
Q 008568 255 ARLFSLLYSNPKTRGRYNILFGLTSGGPYN--YNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 255 AR~fs~l~~~~~~~~~~nIlF~~~~gEe~g--~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
++.|.... .+..++.+|.|++..+||.+ ..|++++++.... ....+++|+.+
T Consensus 115 ~~~l~~~~--~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~--~~~~d~~iv~E 168 (373)
T TIGR01900 115 AATLDGRA--PETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPD--WLAADFAIIGE 168 (373)
T ss_pred HHHHhhhc--cccCCCCCEEEEEEecccccCCCCCHHHHHHhCcc--cccCCEEEEEC
Confidence 99985421 11245779999999999975 3699999876321 12345666654
No 66
>PLN02693 IAA-amino acid hydrolase
Probab=97.44 E-value=0.00068 Score=74.36 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=61.3
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-----------CCCCCccchhHHHHHHHHHHHHhhcccCCCCCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~ 268 (561)
..||+|.+ |.+ +.|+|++.||+|+++... +...|.+-+| +++++|.+++.|++.. ..
T Consensus 90 ~~~via~~-g~~------~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg-~~A~~l~Aa~~L~~~~----~~ 157 (437)
T PLN02693 90 ITGIIGYI-GTG------EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG-HVAMLLGAAKILQEHR----HH 157 (437)
T ss_pred CcEEEEEE-CCC------CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH-HHHHHHHHHHHHHhCc----cc
Confidence 58999998 322 247999999999998632 1123444444 8999999999998753 12
Q ss_pred CceeEEEEEeCCCCCCCcchHHHHHh
Q 008568 269 GRYNILFGLTSGGPYNYNGTHKWLRS 294 (561)
Q Consensus 269 ~~~nIlF~~~~gEe~g~~GS~~~v~~ 294 (561)
.+.+|.|+|..+|| +..|+++++++
T Consensus 158 ~~g~V~~if~pdEE-~~~Ga~~~i~~ 182 (437)
T PLN02693 158 LQGTVVLIFQPAEE-GLSGAKKMREE 182 (437)
T ss_pred CCceEEEEEEEccc-chhhHHHHHHC
Confidence 35689999999999 55799999886
No 67
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.44 E-value=0.00033 Score=77.30 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=61.4
Q ss_pred CCEEEEEeccCCCCCCC-C--------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCC
Q 008568 219 LPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~-~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~ 283 (561)
.|+|++.+|+|+++... | ++.|+.|+-+|+++.|..+++|++.. .+++++|.|++...||.
T Consensus 78 ~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 153 (466)
T TIGR01886 78 DERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG----LPPSKKIRFVVGTNEET 153 (466)
T ss_pred CCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC----CCCCCCEEEEEECcccc
Confidence 46999999999997631 1 35799999999999999999997643 35678999999999999
Q ss_pred CCcchHHHHHhc
Q 008568 284 NYNGTHKWLRSF 295 (561)
Q Consensus 284 g~~GS~~~v~~~ 295 (561)
|..|+++|+++.
T Consensus 154 g~~g~~~~~~~~ 165 (466)
T TIGR01886 154 GWVDMDYYFKHE 165 (466)
T ss_pred CcccHHHHHhcC
Confidence 999999999863
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=97.40 E-value=0.0024 Score=68.05 Aligned_cols=152 Identities=12% Similarity=0.073 Sum_probs=97.8
Q ss_pred CCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCC--
Q 008568 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN-- 316 (561)
Q Consensus 239 ~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~-- 316 (561)
..|-||-.|+++++|++|.+++. .++.++.|+|+..||.|+.|++.-...++| +++|.+|..-..+
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~------~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p------d~~I~vDv~~~~d~~ 229 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA------ELPAEVWLVASSSEEVGLRGGQTATRAVSP------DVAIVLDTACWAKNF 229 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc------CCCceEEEEEEcccccchHHHHHHHhccCC------CEEEEEeccCCCCCC
Confidence 35789999999999999988642 357899999999999999999977665432 4577777653321
Q ss_pred Cc-----------eeE-Eecc-CCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccch--hcCCCeEEEE
Q 008568 317 NE-----------LWI-HVSK-PPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQF--SRLRVTAATL 381 (561)
Q Consensus 317 ~~-----------l~l-hvs~-~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F--~~~gIPAvtl 381 (561)
+. .-+ ...+ ...+ ..+.+.+.++|++.+++.+..... ...+|-..| +..|+|++.+
T Consensus 230 ~~~~~~~~~lg~Gp~i~~~D~~~i~~---~~l~~~l~~~A~~~~Ip~Q~~~~~------ggGTDa~~~~~~~~Giptv~i 300 (344)
T PRK09961 230 DYGAANHRQIGNGPMLVLSDKSLIAP---PKLTAWIETVAAEIGIPLQADMFS------NGGTDGGAVHLTGTGVPTVVM 300 (344)
T ss_pred CCCCCcccccCCCceEEEccCCcCCC---HHHHHHHHHHHHHcCCCcEEEecC------CCcchHHHHHHhCCCCCEEEe
Confidence 00 001 1111 1112 467777788888888766542111 113555544 4489999999
Q ss_pred eccCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 008568 382 SELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESL 420 (561)
Q Consensus 382 s~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaL 420 (561)
+-. . + +-||+. +.++.+.+.+.++++.+.+
T Consensus 301 g~p-~-r----y~Hs~~---E~v~~~D~~~~~~Ll~~~i 330 (344)
T PRK09961 301 GPA-T-R----HGHCAA---SIADCRDILQMIQLLSALI 330 (344)
T ss_pred chh-h-h----cccChh---heEEHHHHHHHHHHHHHHH
Confidence 642 2 1 225555 6788888887777665544
No 69
>PRK08554 peptidase; Reviewed
Probab=97.38 E-value=0.00087 Score=73.47 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=72.4
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC--C--------------CCCCccchhHHHHHHHHHHHHhhcccCC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--A--------------LSVGSDSNGSGVVALLEVARLFSLLYSN 264 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~ 264 (561)
.|+++.+ |. ..+.|++.+|+|+++..+ | +++|+.|+-+|++++|..++.|.+.
T Consensus 53 ~~l~~~~-~~-------~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--- 121 (438)
T PRK08554 53 YAVYGEI-GE-------GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--- 121 (438)
T ss_pred eEEEEEe-CC-------CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc---
Confidence 6888886 31 136899999999998642 1 3579999999999999999998652
Q ss_pred CCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecccc
Q 008568 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (561)
Q Consensus 265 ~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG 313 (561)
.++++|.|+++..||.|-.|+.++++.+.. .....+++|+.|.-+
T Consensus 122 ---~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~-~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 122 ---PLNGKVIFAFTGDEEIGGAMAMHIAEKLRE-EGKLPKYMINADGIG 166 (438)
T ss_pred ---CCCCCEEEEEEcccccCccccHHHHHHHHh-cCCCCCEEEEeCCCC
Confidence 246789999999999887777777665321 112346788888744
No 70
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.33 E-value=0.00053 Score=75.55 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=65.7
Q ss_pred eEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-C--------------CCCCccchhHHHHHHHHHHHHhhcccCCCC
Q 008568 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (561)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~ 266 (561)
|+.|++.+.+ ..|.|++.+|+|+++... | ++.|+.|+-+|++++|...+.|.+..
T Consensus 68 n~~~~~~~~~------~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g---- 137 (466)
T PRK07318 68 NYAGHIEYGE------GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELG---- 137 (466)
T ss_pred CccceEEECC------CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcC----
Confidence 6666654311 246899999999998621 1 35799999999999999999997632
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhc
Q 008568 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (561)
Q Consensus 267 ~~~~~nIlF~~~~gEe~g~~GS~~~v~~~ 295 (561)
.+++.+|.|+++..||.|..|++++++..
T Consensus 138 ~~~~~~i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 138 LPLSKKVRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred CCCCccEEEEEEcccccCchhHHHHHHhC
Confidence 34567899999999999999999999863
No 71
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=97.32 E-value=0.00063 Score=71.76 Aligned_cols=80 Identities=10% Similarity=0.058 Sum_probs=62.4
Q ss_pred CEEEEEeccCCCCCC-C-------CCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHH
Q 008568 220 PTIAIVASYDTFGAA-P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKW 291 (561)
Q Consensus 220 ~~IvI~AHyDs~g~~-~-------~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~ 291 (561)
|.|++.+|+|+++.. + =++.||.|+-+|++++|+.++.|.+. ..++.|+++.+||.|..|++++
T Consensus 61 ~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~--------~~~i~~~~~~dEE~g~~G~~~l 132 (346)
T PRK00466 61 GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEK--------GIKVMVSGLADEESTSIGAKEL 132 (346)
T ss_pred CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHc--------CCCEEEEEEcCcccCCccHHHH
Confidence 469999999999851 1 13589999999999999999998652 1358999999999998999999
Q ss_pred HHhcchhhhcCeeEEEEeccc
Q 008568 292 LRSFDQRLRESIDYAICLNSV 312 (561)
Q Consensus 292 v~~~~~~~l~~I~~vlnLD~i 312 (561)
+++. .+.+++|+.+--
T Consensus 133 ~~~~-----~~~d~~i~~ep~ 148 (346)
T PRK00466 133 VSKG-----FNFKHIIVGEPS 148 (346)
T ss_pred HhcC-----CCCCEEEEcCCC
Confidence 8752 135567766543
No 72
>PRK07205 hypothetical protein; Provisional
Probab=97.31 E-value=0.00082 Score=73.47 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=60.8
Q ss_pred CCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCC
Q 008568 219 LPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGG 281 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gE 281 (561)
.|.|++.+|+|+++..+ | ++.|+.|+=.|++++|...+.|.+.. .+++++|.|++.+.|
T Consensus 75 ~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~----~~~~~~i~l~~~~dE 150 (444)
T PRK07205 75 EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAG----VQFNKRIRFIFGTDE 150 (444)
T ss_pred CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCc
Confidence 46899999999998621 1 35799999999999999999997643 356789999999999
Q ss_pred CCCCcchHHHHHh
Q 008568 282 PYNYNGTHKWLRS 294 (561)
Q Consensus 282 e~g~~GS~~~v~~ 294 (561)
|.|..|+++|++.
T Consensus 151 E~g~~g~~~~~~~ 163 (444)
T PRK07205 151 ETLWRCMNRYNEV 163 (444)
T ss_pred ccCcccHHHHHhC
Confidence 9999999999874
No 73
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0011 Score=71.37 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=80.0
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcc
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l 261 (561)
...|++|++.|..+ .|.|++.+|||+++..+ | +..|+.|+=.|+++.+..++.|...
T Consensus 61 ~~~n~~~~~~~~~~------~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~ 134 (409)
T COG0624 61 GRPNLVARLGGGDG------GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA 134 (409)
T ss_pred CceEEEEEecCCCC------CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 35699999988542 28999999999999853 2 2469999999999999999999764
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEecc
Q 008568 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (561)
Q Consensus 262 ~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~ 311 (561)
. ..++.+|.|++...||.|-.|.++|++..........+++|..|.
T Consensus 135 ~----~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 135 G----GELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred C----CCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 2 346799999999999999999999999743211234456666665
No 74
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=97.21 E-value=0.0014 Score=72.86 Aligned_cols=96 Identities=17% Similarity=0.042 Sum_probs=68.6
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC------C--------------CCCCc---cchhHHHHHHHHHHHH
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP------A--------------LSVGS---DSNGSGVVALLEVARL 257 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~------~--------------~~~GA---dDNaSGvaaLLELAR~ 257 (561)
.|++++.++.... ...|.|++.+|+|+++... | ++.|+ .|++.|++++|++.+
T Consensus 53 gnvi~~~~~~~g~---~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~- 128 (485)
T PRK15026 53 GNILIRKPATAGM---ENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA- 128 (485)
T ss_pred CeEEEEEcCCCCC---CCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH-
Confidence 5899988764321 1367899999999997521 0 23677 499999999887752
Q ss_pred hhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccc
Q 008568 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (561)
Q Consensus 258 fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~i 312 (561)
... .+..+|.|+|+..||.|..|++++... ..+.+++||+|.-
T Consensus 129 --~~~-----~~~~~i~~l~t~dEE~G~~ga~~l~~~-----~~~~~~~i~~e~~ 171 (485)
T PRK15026 129 --DEN-----VVHGPLEVLLTMTEEAGMDGAFGLQSN-----WLQADILINTDSE 171 (485)
T ss_pred --hCC-----CCCCCEEEEEEcccccCcHhHHHhhhc-----cCCcCEEEEeCCC
Confidence 211 125578999999999999999988543 1245788888764
No 75
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=97.14 E-value=0.0017 Score=68.84 Aligned_cols=82 Identities=21% Similarity=0.208 Sum_probs=62.7
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
.|+++.+ |. ..|+|++.+|+|+++..+ | ++.|+.|+=.|++++|+.++.+.+..
T Consensus 45 ~~~~~~~-g~-------~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~- 115 (370)
T TIGR01246 45 KNLWATR-GT-------GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKN- 115 (370)
T ss_pred ceEEEEe-cC-------CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhc-
Confidence 5899875 31 247999999999998742 1 24688888889999888888776532
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHh
Q 008568 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g-~~GS~~~v~~ 294 (561)
.+++.+|.|+|..+||.+ ..|++.+++.
T Consensus 116 ---~~~~~~v~~~~~~dEE~~~~~G~~~~~~~ 144 (370)
T TIGR01246 116 ---PDHKGSISLLITSDEEGTAIDGTKKVVET 144 (370)
T ss_pred ---CCCCCcEEEEEEeccccCCCcCHHHHHHH
Confidence 245679999999999975 4799998875
No 76
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=97.12 E-value=0.0049 Score=65.62 Aligned_cols=151 Identities=9% Similarity=0.035 Sum_probs=92.0
Q ss_pred CCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCC--
Q 008568 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW-- 315 (561)
Q Consensus 238 ~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~-- 315 (561)
+.| -||-.|++++++++|.+.+.. .+++++|.|+|+..||.| .|+.+ .+. .++.-+|.+|+-...
T Consensus 179 gr~-~D~K~G~a~~l~~~~~l~~~~----~~~~~~v~~~~t~qEEvG-~gaa~---~i~----pd~a~~i~vd~~~~~p~ 245 (343)
T TIGR03106 179 SRH-LDDKAGVAALLAALKAIVEHK----VPLPVDVHPLFTITEEVG-SGASH---ALP----PDVAELVSVDNGTVAPG 245 (343)
T ss_pred EEe-cccHHhHHHHHHHHHHHHhcC----CCCCceEEEEEECCcccC-ccchh---ccc----HhhhccEEEEecccCCC
Confidence 344 789999999999999997643 246789999999999999 57432 222 122223444422111
Q ss_pred ----C--CceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCc--ccchhcCCCeEEEEeccCCC
Q 008568 316 ----N--NELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWE--HEQFSRLRVTAATLSELSAA 387 (561)
Q Consensus 316 ----~--~~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sd--He~F~~~gIPAvtls~~~~~ 387 (561)
+ -.+.+.-...+.+ ..+.+.+.++|++.+++.+..... ...+| ...++..|+|+..++= +.
T Consensus 246 ~~~lg~Gp~i~~~d~~~~~~---~~l~~~l~~~A~~~~Ip~Q~~~~~------~~gtDa~~~~~~~~Gi~t~~i~i-P~- 314 (343)
T TIGR03106 246 QNSSEHGVTIAMADSSGPFD---YHLTRKLIRLCQDHGIPHRRDVFR------YYRSDAASAVEAGHDIRTALVTF-GL- 314 (343)
T ss_pred CCcCCCCceEEEecCCCCCC---HHHHHHHHHHHHHcCCCcEEEecC------CCCChHHHHHHcCCCCCEEEeec-cc-
Confidence 0 1221221122223 467778888999888887753211 11333 4456668999999964 22
Q ss_pred CCccccCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 008568 388 PELLESTGGLLDSRHFVDETSFIRSVKLVAESL 420 (561)
Q Consensus 388 ~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaL 420 (561)
++.|| . +.++.+.+...++++.+.+
T Consensus 315 ----Ry~Hs-~---e~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 315 ----DASHG-Y---ERTHIDALEALANLLVAYA 339 (343)
T ss_pred ----cchhh-h---hhccHHHHHHHHHHHHHHh
Confidence 13366 4 7788888877666665433
No 77
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.08 E-value=0.0016 Score=71.73 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCEEEEEeccCCCCCCC-C--------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCC
Q 008568 219 LPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (561)
Q Consensus 219 ~~~IvI~AHyDs~g~~~-~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~ 283 (561)
.|+|++.+|+|+++..+ | ++.|+.|+-.|++++|+.++.|.+.. .+++++|.|+++..||.
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 142 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELG----LKLKKKIRFIFGTDEET 142 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCccc
Confidence 46899999999998621 1 35799999999999999999997643 34678999999999999
Q ss_pred CCcchHHHHHh
Q 008568 284 NYNGTHKWLRS 294 (561)
Q Consensus 284 g~~GS~~~v~~ 294 (561)
|..|+++|+++
T Consensus 143 g~~g~~~~l~~ 153 (447)
T TIGR01887 143 GWACIDYYFEH 153 (447)
T ss_pred CcHhHHHHHHh
Confidence 99999999976
No 78
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.0058 Score=65.16 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=99.8
Q ss_pred CCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEeccccCCCC-
Q 008568 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNN- 317 (561)
Q Consensus 239 ~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD~iG~~~~- 317 (561)
.=|-||--|+++|||++|.++ . ..++..+.|+++..||.|+-|++......+| +..|-+|..+..+.
T Consensus 176 skalDdR~gva~lle~lk~l~-~-----~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p------d~aiavd~~~~~d~~ 243 (355)
T COG1363 176 SKALDDRAGVAALLELLKELK-G-----IELPADVYFVASVQEEVGLRGAKTSAFRIKP------DIAIAVDVTPAGDTP 243 (355)
T ss_pred eeeccchHhHHHHHHHHHHhc-c-----CCCCceEEEEEecchhhccchhhccccccCC------CEEEEEecccccCCC
Confidence 346799999999999999994 1 2467889999999999999999977666433 34566666655411
Q ss_pred ------------ceeEEeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccchhc--CCCeEEEEec
Q 008568 318 ------------ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSR--LRVTAATLSE 383 (561)
Q Consensus 318 ------------~l~lhvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~--~gIPAvtls~ 383 (561)
..-....... ..-..+.+.|..+|++.+++.+..-.+ ...+|-..+.. .|||+.+++-
T Consensus 244 ~~~~~~~~lg~Gp~i~~~D~~~--~~~~~l~~~L~~~A~~~~Ip~Q~~v~~------~ggTDA~a~~~~g~gvpta~Igi 315 (355)
T COG1363 244 GVPKGDVKLGKGPVIRVKDASG--IYHPKLRKFLLELAEKNNIPYQVDVSP------GGGTDAGAAHLTGGGVPTALIGI 315 (355)
T ss_pred CCcccccccCCCCEEEEEcCCC--CCCHHHHHHHHHHHHHcCCCeEEEecC------CCCccHHHHHHcCCCCceEEEec
Confidence 1110111110 112457777788899989888753221 23556655555 5799999975
Q ss_pred cCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 008568 384 LSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAR 422 (561)
Q Consensus 384 ~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~vaeaLa~ 422 (561)
. . .| .||.. +.++.+.+....+++.+.+.+
T Consensus 316 p-~--ry---~Hs~~---e~~~~~D~~~~~~Ll~~~i~~ 345 (355)
T COG1363 316 P-T--RY---IHSPV---EVAHLDDLEATVKLLVAYLES 345 (355)
T ss_pred c-c--cc---ccCcc---eeecHHHHHHHHHHHHHHHHh
Confidence 2 1 12 25555 567777777666666544443
No 79
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.92 E-value=0.0046 Score=66.47 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=61.6
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
.|++|.+ |.+ .|+|++.+|+|+++..+ | ++.|+.|+-.|++++|..++.|.+..
T Consensus 57 ~~v~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 127 (395)
T TIGR03526 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CcEEEEe-CCC-------CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcC-
Confidence 5889987 421 36899999999998621 1 24799999999999999999997743
Q ss_pred CCCCCCceeEEEEEeCCCC-CCCcchHHHHHh
Q 008568 264 NPKTRGRYNILFGLTSGGP-YNYNGTHKWLRS 294 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe-~g~~GS~~~v~~ 294 (561)
..++.++.|++..+|| .+=.|+++++++
T Consensus 128 ---~~~~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEEecccccCCcHhHHHHHhc
Confidence 2356789898888888 333467777764
No 80
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=96.75 E-value=0.0069 Score=65.06 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC---C--------------CCCCccchhHHHHHHHHHHHHhhcccC
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~ 263 (561)
.|++|.+ |.+ .|+|++.+|+|+++... | ++.|+.|+-.|++++|..++.|.+..
T Consensus 57 ~n~~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g- 127 (395)
T TIGR03320 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CCEEEEe-CCC-------CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcC-
Confidence 4889987 421 36899999999998521 1 25799999999999999999997642
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHh
Q 008568 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (561)
Q Consensus 264 ~~~~~~~~nIlF~~~~gEe~g-~~GS~~~v~~ 294 (561)
..++.+|+|++..+||.+ -.|++++++.
T Consensus 128 ---~~~~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEecccccccCchHHHHHHHh
Confidence 235678889888878753 2345556653
No 81
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.19 Score=56.27 Aligned_cols=163 Identities=24% Similarity=0.276 Sum_probs=99.0
Q ss_pred CCCCcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCCCCCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEE
Q 008568 196 ASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILF 275 (561)
Q Consensus 196 ~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF 275 (561)
+...+.||+|.|.+-.. |. .+-||+++.|+.... - |--|++.++.+|+.|++.. =-.++|+|
T Consensus 116 e~y~G~NvyGilRAPRg--dg--tEsivl~vP~~~~~~-------~--~~~~v~l~lsla~~f~r~~-----yWsKDII~ 177 (617)
T KOG3566|consen 116 EEYSGENVYGILRAPRG--DG--TESIVLVVPYGRSSG-------S--NSASVALLLSLADYFSRWV-----YWSKDIIF 177 (617)
T ss_pred hhcCCceEEEEEecCCC--CC--cceEEEEEecccCCC-------c--chhHHHHHHHHHHHhcCCe-----eecccEEE
Confidence 44458999999987332 22 668999999986532 2 3557889999999998742 24679999
Q ss_pred EEeCCCCCCCcchHHHHHh-cchhh-----h---------cCeeEEEEeccccCCCCceeEEeccCC-chhHHHHHHHHH
Q 008568 276 GLTSGGPYNYNGTHKWLRS-FDQRL-----R---------ESIDYAICLNSVGSWNNELWIHVSKPP-ENAYIKQIFEGF 339 (561)
Q Consensus 276 ~~~~gEe~g~~GS~~~v~~-~~~~~-----l---------~~I~~vlnLD~iG~~~~~l~lhvs~~p-~~~~~~~l~~~l 339 (561)
+++++ .+.|-+.|++. |++.. . -.+.+.+++++-...-+.+-+...+.. +-+ --+++...
T Consensus 178 v~~d~---~~~g~~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~~~d~v~i~~eglNGqlP-NLDlf~i~ 253 (617)
T KOG3566|consen 178 VFTDG---PALGLDAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEKFQDIVEIQYEGLNGQLP-NLDLFNIT 253 (617)
T ss_pred EEeCC---ccccHHHHHHHhhccccccccccccccccccccceeeEEEEEeccccceeEEEEecccCCCCC-cchHHHHH
Confidence 99987 77899999997 33111 0 123567777776543222222222211 101 12455444
Q ss_pred HHHHHHhCCeeeeccccccCCCCC-----------------------CCCcccchhcCCCeEEEE
Q 008568 340 TNVAEELGFKVGLKHKKINISNPR-----------------------VAWEHEQFSRLRVTAATL 381 (561)
Q Consensus 340 ~~~a~~~~i~v~~~~~kin~~~~~-----------------------~~sdHe~F~~~gIPAvtl 381 (561)
+...++.|..+.+.-+.-+. |.+ +-.-|--|.+-||-|+|+
T Consensus 254 ~~~~~k~g~~v~l~g~~~~~-d~~s~~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~Y~vdaLTl 317 (617)
T KOG3566|consen 254 QIFMQKEGLLVTLQGKLLPL-DWHSNSMYLSGLKTLLLMLLTQASGSPTGIHGLFLRYRVDALTL 317 (617)
T ss_pred HHHHHhcCceEEEecCcCCc-ccccCchhhhhHHHHHHHHHHHHhcCCCCccccccccccceEEe
Confidence 44556777777654321111 111 011367788889999999
No 82
>PRK08737 acetylornithine deacetylase; Provisional
Probab=96.38 E-value=0.009 Score=63.88 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=57.6
Q ss_pred cceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-C--------------CCCCccchhHHHHHHHHHHHHhhcccCC
Q 008568 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A--------------LSVGSDSNGSGVVALLEVARLFSLLYSN 264 (561)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~ 264 (561)
..|+++. .| .|.|++.+|+|+++..+ | ++.||.|--+|++++|..++.+
T Consensus 54 ~~nli~~-~g---------~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~~------ 117 (364)
T PRK08737 54 AVSLYAV-RG---------TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANAG------ 117 (364)
T ss_pred ceEEEEE-cC---------CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHcc------
Confidence 4688885 23 25799999999998632 1 3469999988999999987631
Q ss_pred CCCCCceeEEEEEeCCCCCCC-cchHHHHHh
Q 008568 265 PKTRGRYNILFGLTSGGPYNY-NGTHKWLRS 294 (561)
Q Consensus 265 ~~~~~~~nIlF~~~~gEe~g~-~GS~~~v~~ 294 (561)
..+|.|+++..||.|- .|++++++.
T Consensus 118 -----~~~v~~~~~~dEE~g~~~g~~~~~~~ 143 (364)
T PRK08737 118 -----DGDAAFLFSSDEEANDPRCVAAFLAR 143 (364)
T ss_pred -----CCCEEEEEEcccccCchhhHHHHHHh
Confidence 2469999999999876 799999886
No 83
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=95.80 E-value=0.058 Score=58.52 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=81.6
Q ss_pred CC-CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-----C---------------------------------C
Q 008568 197 SP-TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----A---------------------------------L 237 (561)
Q Consensus 197 ~~-~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----~---------------------------------~ 237 (561)
|| .-.||.+.++|.+ .+.+||+.+|||++++.+ + .
T Consensus 61 DpygR~nv~AlVrg~~------~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlf 134 (553)
T COG4187 61 DPYGRRNVFALVRGGT------SKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLF 134 (553)
T ss_pred CccccceeEEEEecCC------CCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCccc
Confidence 44 4789999999933 267999999999999732 0 1
Q ss_pred CCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhh-hc--CeeEEEEeccccC
Q 008568 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRL-RE--SIDYAICLNSVGS 314 (561)
Q Consensus 238 ~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~-l~--~I~~vlnLD~iG~ 314 (561)
+-||-|=-||.|+=|..-..|+.- +.-+-||+|+...-||..-.|.+.-+..++... .. .+.++||+|-++.
T Consensus 135 GRGa~DMKsGlav~la~L~~fa~~-----~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 135 GRGALDMKSGLAVHLACLEEFAAR-----TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred CCCchhhhhhhHHHHHHHHHHhhC-----CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 359999999999988887777653 345679999999999999999887666544211 12 3668999999976
Q ss_pred C
Q 008568 315 W 315 (561)
Q Consensus 315 ~ 315 (561)
.
T Consensus 210 ~ 210 (553)
T COG4187 210 Q 210 (553)
T ss_pred C
Confidence 4
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=91.63 E-value=1.2 Score=48.40 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=67.0
Q ss_pred ceEEEEecCCCCCCCCCCCCEEEEEeccCCCCCCC-------CCCCC---ccchhHHHHHHHHHHHHhhcccCCCCCCCc
Q 008568 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-------ALSVG---SDSNGSGVVALLEVARLFSLLYSNPKTRGR 270 (561)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-------~~~~G---AdDNaSGvaaLLELAR~fs~l~~~~~~~~~ 270 (561)
+=|+|.+.|.++ .|+|.+=|-||.+++.. +..+| |..--.-++++|-.|+.|++.. ...+
T Consensus 57 TGvva~~~~g~~------g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~----~~~~ 126 (392)
T COG1473 57 TGVVATLKGGKP------GPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHK----DNLP 126 (392)
T ss_pred eEEEEEEcCCCC------CCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhh----hhCC
Confidence 558899987553 45999999999999721 11222 2223345788999999998764 2456
Q ss_pred eeEEEEEeCCCCCCCcchHHHHHhcchhhhcC-eeEEEEe
Q 008568 271 YNILFGLTSGGPYNYNGTHKWLRSFDQRLRES-IDYAICL 309 (561)
Q Consensus 271 ~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~-I~~vlnL 309 (561)
-+|.|+|-.+||.+- |.+.++++= .+++ +++++-+
T Consensus 127 Gtv~~ifQPAEE~~~-Ga~~mi~~G---~~~~~vD~v~g~ 162 (392)
T COG1473 127 GTVRLIFQPAEEGGG-GAKAMIEDG---VFDDFVDAVFGL 162 (392)
T ss_pred cEEEEEecccccccc-cHHHHHhcC---CccccccEEEEe
Confidence 789999999999766 999999871 2455 6655543
No 85
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=86.49 E-value=2.4 Score=46.01 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCCEEEEEeccCCCCCC---CC--------------CCCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCC
Q 008568 218 QLPTIAIVASYDTFGAA---PA--------------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (561)
Q Consensus 218 ~~~~IvI~AHyDs~g~~---~~--------------~~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~g 280 (561)
.+++|++-.|||-.+.. .| .+-|+.||---+++-.++.++|.++. ...+-||+|+|-+-
T Consensus 90 ~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g----~~lpvnv~f~~Egm 165 (473)
T KOG2276|consen 90 SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLG----IDLPVNVVFVFEGM 165 (473)
T ss_pred CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhC----ccccceEEEEEEec
Confidence 47899999999998874 12 24699999999999999999998864 45689999999999
Q ss_pred CCCCCcchHHHHHhcchhhhcCeeEEE
Q 008568 281 GPYNYNGTHKWLRSFDQRLRESIDYAI 307 (561)
Q Consensus 281 Ee~g~~GS~~~v~~~~~~~l~~I~~vl 307 (561)
||.|-.|-...++.........++++.
T Consensus 166 EEsgS~~L~~l~~~~kD~~~~~vD~vc 192 (473)
T KOG2276|consen 166 EESGSEGLDELIEKEKDKFFKDVDFVC 192 (473)
T ss_pred hhccCccHHHHHHHHhhhhhccCCEEE
Confidence 999999998888753223345666644
No 86
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=63.23 E-value=71 Score=35.75 Aligned_cols=165 Identities=9% Similarity=-0.044 Sum_probs=88.9
Q ss_pred CCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCee-------------
Q 008568 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESID------------- 304 (561)
Q Consensus 238 ~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~------------- 304 (561)
..++-||=.|+.++||..+...... + ..+....++++|+-||.|..|.+--...+.+..++.|.
T Consensus 246 ~s~rlDnr~~~~~~l~al~~~~~~~--~-~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~ 322 (465)
T PTZ00371 246 SSPRLDNLGSSFCAFKALTEAVESL--G-ENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDS 322 (465)
T ss_pred EEecchhHHHHHHHHHHHHhccccc--c-CCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhH
Confidence 4567789999999999987653210 0 11334455566999999998877433333222112111
Q ss_pred --------EEEEeccccCC-----C--C---ce------eE-EeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccC
Q 008568 305 --------YAICLNSVGSW-----N--N---EL------WI-HVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINI 359 (561)
Q Consensus 305 --------~vlnLD~iG~~-----~--~---~l------~l-hvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~ 359 (561)
++|..|+.-.. + + .. -+ +.+.. +...-..+...++++|++.|+.++.-..+
T Consensus 323 ~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~-~y~td~~~~a~i~~la~~~~Ip~Q~~~~~--- 398 (465)
T PTZ00371 323 FAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQ-RYATNGVTASLLKAIAKKANIPIQEFVVK--- 398 (465)
T ss_pred HHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCC-CcccCHHHHHHHHHHHHHcCCCEEEEEec---
Confidence 78888886431 0 0 01 11 11111 00111345566677888888887753211
Q ss_pred CCCCCCCcccch--hcCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHHHH
Q 008568 360 SNPRVAWEHEQF--SRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKL 415 (561)
Q Consensus 360 ~~~~~~sdHe~F--~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~~~ 415 (561)
.+..-.++--++ ++.|||++.++-- .+.-||+.-+...-|.+.+.+-.+.
T Consensus 399 ~d~~~GsTig~i~~s~~Gi~tvDiGiP------~l~MHS~rE~~~~~D~~~~~~l~~a 450 (465)
T PTZ00371 399 NDSPCGSTIGPILSSNLGIRTVDIGIP------QLAMHSIREMCGVVDIYYLVKLIKA 450 (465)
T ss_pred CCCCCcchHHHHHHhCCCCcEEEechh------hcccccHHHHccHHHHHHHHHHHHH
Confidence 111113333344 3579999988641 1123788866666666665554433
No 87
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=60.53 E-value=8.5 Score=41.14 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=23.5
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
...|++|.++|.. ..|.|+++||+|++|.
T Consensus 44 ~~Gnlia~~~g~~------~~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 44 RRGAIRATLPGRE------ATPARAVVTHLDTLGA 72 (343)
T ss_pred CCeEEEEEECCCC------CCCeEEEEEeeccccc
Confidence 4689999987742 2468999999999997
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=60.04 E-value=82 Score=34.85 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=85.3
Q ss_pred CCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCc---chHH-HHHh----cch----------hh
Q 008568 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN---GTHK-WLRS----FDQ----------RL 299 (561)
Q Consensus 238 ~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~---GS~~-~v~~----~~~----------~~ 299 (561)
..++-||=.|+.++||..+.... +..+++++|+-||.|.. |++- |+++ +-. ..
T Consensus 229 ~s~~lDnr~~~~~~l~al~~~~~---------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~ 299 (428)
T PRK02813 229 SSGRLDNLSSCHAGLEALLAAAS---------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRA 299 (428)
T ss_pred EEecchhHHHHHHHHHHHHhcCC---------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHh
Confidence 34567888999999998765421 46788999999999998 8773 2221 100 01
Q ss_pred hcCeeEEEEeccccCC--C-----C---ceeE------EeccCCchhHHHHHHHHHHHHHHHhCCeeeeccccccCCCCC
Q 008568 300 RESIDYAICLNSVGSW--N-----N---ELWI------HVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPR 363 (561)
Q Consensus 300 l~~I~~vlnLD~iG~~--~-----~---~l~l------hvs~~p~~~~~~~l~~~l~~~a~~~~i~v~~~~~kin~~~~~ 363 (561)
+ +-.++|.+|+.-.. + + ...+ -.....+...-..+...++++|++.++..+.-..+ .+-.
T Consensus 300 i-~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~---~d~~ 375 (428)
T PRK02813 300 L-ARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNR---SDMP 375 (428)
T ss_pred h-CCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEec---CCCC
Confidence 1 23578888876332 0 0 0101 01000000012244455677788888887653221 1111
Q ss_pred CCCcccchh--cCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHH
Q 008568 364 VAWEHEQFS--RLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIR 411 (561)
Q Consensus 364 ~~sdHe~F~--~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~ 411 (561)
-.++--++. +.|||++.++-- .+.-||+.-+.+.-|.+.+.+
T Consensus 376 gGstig~i~~s~~Gi~tvdiGiP------~l~MHS~~E~~~~~D~~~~~~ 419 (428)
T PRK02813 376 CGSTIGPITAARLGIRTVDVGAP------MLAMHSARELAGVKDHAYLIK 419 (428)
T ss_pred CccHHHHHHHhCCCCcEEEeChh------hcccccHHHHccHHHHHHHHH
Confidence 244444553 479999998641 112368876555555544443
No 89
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=59.92 E-value=6.9 Score=40.89 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.7
Q ss_pred eEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
||+++++|.+ ..|.|+|+||+|..|+
T Consensus 2 nvi~~~~g~~------~~~~vmi~AHmDEiG~ 27 (292)
T PF05343_consen 2 NVIARKKGKE------GGPKVMIAAHMDEIGF 27 (292)
T ss_dssp -EEEEECSSC------SSSEEEEEEE--B-EE
T ss_pred cEEEEECCCC------CCceEEEEEccceeeE
Confidence 8999999822 4789999999999997
No 90
>PRK09961 exoaminopeptidase; Provisional
Probab=55.96 E-value=9.7 Score=40.67 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.7
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
...|++|++.|.+ .|.|+++||+|++|.
T Consensus 41 ~~Gnvi~~~~g~~-------~~~v~l~aHmDevg~ 68 (344)
T PRK09961 41 GLGSVLIRLNEST-------GPKVMICAHMDEVGF 68 (344)
T ss_pred CCCCEEEEEcCCC-------CCEEEEEeccceece
Confidence 4679999887622 358999999999996
No 91
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=50.29 E-value=13 Score=40.09 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.3
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
..-||+++++|.+. .|-|+|+||+|.+|.
T Consensus 43 ~lGnlia~~~g~~g------~~~imi~AHmDEiG~ 71 (355)
T COG1363 43 RLGNLIAKKGGKNG------PPKVMIAAHMDEIGF 71 (355)
T ss_pred CCCcEEEEecCCCC------CccEEEEeecceeee
Confidence 46789999998331 356999999999997
No 92
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=48.84 E-value=14 Score=39.58 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.1
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
...||+|.+.|.+. +.|.|++.||+|++|+
T Consensus 39 ~~GNvia~~~g~~~-----~~~~vml~AHmDeVGf 68 (350)
T TIGR03107 39 GLGGIFGIKESQVE-----NAPRVMVAAHMDEVGF 68 (350)
T ss_pred CCCCEEEEecCCCC-----CCCEEEEEecccEeCE
Confidence 35799999876311 2469999999999997
No 93
>PRK02256 putative aminopeptidase 1; Provisional
Probab=43.56 E-value=31 Score=38.50 Aligned_cols=156 Identities=8% Similarity=-0.012 Sum_probs=83.5
Q ss_pred CCCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHH----HhcchhhhcCe----------
Q 008568 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWL----RSFDQRLRESI---------- 303 (561)
Q Consensus 238 ~~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v----~~~~~~~l~~I---------- 303 (561)
+.++-||=.|+.+++|..+... .++..+++++|+-||.|..|.+-=. .+.-.+....+
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~--------~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~pd~~~~~~~ 326 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE--------NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEGNYSDLKLR 326 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc--------cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCCCcchHHHH
Confidence 5567889999999999987653 1356788999999999987765222 11000000011
Q ss_pred -----eEEEEeccccCC-----C------------CceeEEeccCC-c-hh--HHHHHHHHHHHHHHHhCCeeeec-ccc
Q 008568 304 -----DYAICLNSVGSW-----N------------NELWIHVSKPP-E-NA--YIKQIFEGFTNVAEELGFKVGLK-HKK 356 (561)
Q Consensus 304 -----~~vlnLD~iG~~-----~------------~~l~lhvs~~p-~-~~--~~~~l~~~l~~~a~~~~i~v~~~-~~k 356 (561)
.++|.+|+.-.. + +.......... + .+ .-..+...+.++|++.+++++.. ..+
T Consensus 327 ~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r 406 (462)
T PRK02256 327 RALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNVVWQTAELGK 406 (462)
T ss_pred HHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 278888877322 0 00110010000 0 00 02346666778888888887752 211
Q ss_pred ccCCCCCCCCcccchhcCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHH
Q 008568 357 INISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSF 409 (561)
Q Consensus 357 in~~~~~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L 409 (561)
.+. .--..+.-..++.|||++.++-- .+.-||+.-+...-|.+.+
T Consensus 407 ~d~--~~GgTig~~~s~~Gi~tvdiGiP------~l~MHS~rE~~~~~D~~~~ 451 (462)
T PRK02256 407 VDQ--GGGGTIAKFLANYGMEVIDCGVA------LLSMHSPFEIASKADIYET 451 (462)
T ss_pred CCC--CCcChHHHHHcCCCCcEEEechh------hhccccHHHHhhHHHHHHH
Confidence 111 01123432334679999998641 1122677754444444433
No 94
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=37.35 E-value=30 Score=38.11 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=45.4
Q ss_pred CCccchhHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhcchhhhcCeeEEEEec
Q 008568 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (561)
Q Consensus 239 ~GAdDNaSGvaaLLELAR~fs~l~~~~~~~~~~nIlF~~~~gEe~g~~GS~~~v~~~~~~~l~~I~~vlnLD 310 (561)
-||||- +|++.+++..+.+.... + .-+..+|.+.++++||.|..|.+++.-. .=...+.-++|
T Consensus 141 LgaD~k-AGia~i~~al~~~~~~~--~-~i~h~~i~~g~s~~Ee~g~rg~~~~~~a-----~f~a~~ay~iD 203 (414)
T COG2195 141 LGADDK-AGIAEIMTALSVLREKH--P-EIPHGGIRGGFSPDEEIGGRGAANKDVA-----RFLADFAYTLD 203 (414)
T ss_pred cCCcch-hHHHHHHHHHHHHhhcC--c-cccccCeEEEecchHHhhhhhhhhccHH-----hhhcceeEecC
Confidence 577766 67777777777776432 1 3467899999999999999999987543 12245667777
No 95
>PRK08652 acetylornithine deacetylase; Provisional
Probab=29.23 E-value=1.5e+02 Score=30.68 Aligned_cols=76 Identities=8% Similarity=0.017 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCeeeeccccccCCCCCCCCcccchhcCCCeEEEEeccCCCCCccccCCCCCCCcCCCCHHHHHHHH
Q 008568 334 QIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSV 413 (561)
Q Consensus 334 ~l~~~l~~~a~~~~i~v~~~~~kin~~~~~~~sdHe~F~~~gIPAvtls~~~~~~d~~~~r~si~Dt~d~id~~~L~~~~ 413 (561)
.+.+.+.+++++.|...... . ....+|-..|++.|+|++.+.-... . .-|+.. |.++.+.+.+.+
T Consensus 270 ~lv~~l~~a~~~~g~~~~~~----~---~~g~tDa~~~~~~gip~v~~Gpg~~-~----~~H~~n---E~i~i~~l~~~~ 334 (347)
T PRK08652 270 EIVQLLEKAMKEVGLEPEFT----V---MRSWTDAINFRYNGTKTVVWGPGEL-D----LCHTKF---ERIDVREVEKAK 334 (347)
T ss_pred HHHHHHHHHHHHhCCCCCcC----c---CCccchhHHHHHCCCCEEEECCCch-h----hcCCCC---ceeeHHHHHHHH
Confidence 55666666555545432211 1 0113467778888999998764211 1 124443 889999999999
Q ss_pred HHHHHHHHHHH
Q 008568 414 KLVAESLARHI 424 (561)
Q Consensus 414 ~~vaeaLa~~i 424 (561)
+.+.+.+.+++
T Consensus 335 ~~l~~~~~~~~ 345 (347)
T PRK08652 335 EFLKALNEILL 345 (347)
T ss_pred HHHHHHHHHHh
Confidence 99998887765
No 96
>PRK09864 putative peptidase; Provisional
Probab=28.45 E-value=48 Score=35.78 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred CcceEEEEecCCCCCCCCCCCCEEEEEeccCCCCC
Q 008568 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (561)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (561)
...|+++.. |.+ .|.|++.||+|.+|.
T Consensus 41 ~~GNli~~~-g~~-------~~kvml~AHmDevG~ 67 (356)
T PRK09864 41 GLGSFVARK-GNK-------GPKVAVVGHMDEVGF 67 (356)
T ss_pred CCCCEEEEe-CCC-------CcEEEEEecccccCE
Confidence 357899985 511 358999999999997
Done!