Query 008570
Match_columns 561
No_of_seqs 148 out of 1194
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 8E-148 2E-152 1173.9 31.7 550 1-561 211-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 5E-136 1E-140 1133.7 41.2 514 1-528 163-679 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 5.9E-93 1.3E-97 799.9 32.3 482 1-523 134-624 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 1.4E-91 3E-96 790.8 41.4 489 1-525 154-654 (654)
5 TIGR00733 putative oligopeptid 100.0 3.2E-47 7E-52 420.6 34.0 432 2-522 123-589 (591)
6 COG1297 Predicted membrane pro 100.0 4E-33 8.7E-38 296.0 22.1 443 3-528 138-619 (624)
7 PF03169 OPT: OPT oligopeptide 89.1 7.3 0.00016 44.6 14.6 102 267-370 3-121 (624)
8 TIGR00733 putative oligopeptid 84.8 63 0.0014 36.9 18.6 229 266-519 2-265 (591)
9 COG0628 yhhT Predicted permeas 72.2 40 0.00086 35.6 11.6 72 298-371 255-331 (355)
10 TIGR02872 spore_ytvI sporulati 47.7 2E+02 0.0044 29.6 11.5 39 332-370 287-329 (341)
11 PF01594 UPF0118: Domain of un 44.0 3.1E+02 0.0067 28.1 12.1 54 318-371 259-317 (327)
12 PRK12287 tqsA pheromone autoin 40.6 3.2E+02 0.0069 28.8 11.7 48 323-370 266-318 (344)
13 PF01864 DUF46: Putative integ 24.3 1.5E+02 0.0033 28.3 5.3 31 413-443 41-71 (175)
14 PF09512 ThiW: Thiamine-precur 22.4 3.6E+02 0.0078 25.2 7.1 27 349-375 90-117 (150)
15 COG5438 Predicted multitransme 21.8 6.1E+02 0.013 27.3 9.5 22 426-447 314-335 (385)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-148 Score=1173.93 Aligned_cols=550 Identities=61% Similarity=1.232 Sum_probs=535.8
Q ss_pred CccCchhHHHHHHHHhccccccCcCccchHHHHHHHHHHHHHHhhcccchhhhccccchhhhhccCCcceeeeccccccc
Q 008570 1 MWWPANLVQVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQGL 80 (561)
Q Consensus 1 ~vwP~~l~t~~l~~slH~~~~~~~~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~~~~~wi~p~n~~~~~l~G~~~Gl 80 (561)
|.||++|++++|||+||+++++++.+++|+|||.++|.++|+|+|+|+|+||+|+.+||.||+.|+|.+++||+||.+||
T Consensus 211 m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~~GL 290 (761)
T KOG2262|consen 211 MWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGLTGL 290 (761)
T ss_pred hcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhccccccc
Confidence 79999999999999999998887767999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCCccCcCCceeeceeeeccC
Q 008570 81 GMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRILNEK 160 (561)
Q Consensus 81 Gl~~~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~~ 160 (561)
|++|+||||++|++|+|||+.+|+++.+|.++|.++..+|+.|++||+|.|+++++|+.|+++||++|++||+++|+| +
T Consensus 291 Gi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~-~ 369 (761)
T KOG2262|consen 291 GIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVTKILD-S 369 (761)
T ss_pred ccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEeceeeeec-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhcCCChhhHHhhhhccCCChH
Q 008570 161 EFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKKNYEAVPQW 240 (561)
Q Consensus 161 ~~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~~~~~~~D~h~~lm~~~y~evP~w 240 (561)
|+++|.+|||+|||.|+++.++++|+++||++++.++|++|+|+|| ||+..|++ .++++|+|.|+||| |||||+|
T Consensus 370 ~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkd---iw~~~~~~-~~k~~DiHtrlMkk-YKeVP~W 444 (761)
T KOG2262|consen 370 KFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKD---IWQQTKKA-FNKKMDIHTRLMKK-YKEVPDW 444 (761)
T ss_pred ccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHH---HHHHHHhc-cccCCCHHHHHHHH-hccCcHH
Confidence 9999999999999999999999999999999999999999999999 88888876 36789999999999 9999999
Q ss_pred HHHHHHHHHHHHHhheeeccccCCCcchHHHHHHHHHHHHHHhhheeEEEeecCCchhHHHHHHhhHhccCCchhHHHHH
Q 008570 241 WFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGKPLANVAF 320 (561)
Q Consensus 241 w~~~~~v~~~~~~~~~~~~~~~~~~lp~w~~ilal~l~~i~~~~~~~~~g~tg~~p~l~~isqli~g~~~pg~~~anl~~ 320 (561)
||++.++++++++++.|+.++.+.|+|||++++|+++++++++|.|.++|+||++||+|+++|+|.||+.||+|+|||.|
T Consensus 445 Wf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~F 524 (761)
T KOG2262|consen 445 WFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCF 524 (761)
T ss_pred HHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchHHHHHH
Confidence 99999999999999999999877799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhHHH
Q 008570 321 KTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVF 400 (561)
Q Consensus 321 ~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~~~t~p~~~~~ 400 (561)
|.||+.++.||++++||+|+|||||+|||.||.+|++||+++++|+.+|..|++.+++|+|+++ +++.||||..+++
T Consensus 525 K~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TCP~~rvf 601 (761)
T KOG2262|consen 525 KTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTCPSDRVF 601 (761)
T ss_pred HHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred HhhhhhheeeccccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHHhhhccCCCcchhhhhHHHH
Q 008570 401 YNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAKAVNYLSWGA 480 (561)
Q Consensus 401 ~~~sv~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~~~~~~~ 480 (561)
+++||+||++||+|+|+.+++|+.+.|+|++|+++|+++|+++|++|+++|.+++|.|+++.|.+++||++..||+++++
T Consensus 602 fnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~i 681 (761)
T KOG2262|consen 602 FNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAI 681 (761)
T ss_pred EeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCCcccccCCC-CcCCCCCCCCCCccccCCCC
Q 008570 481 VGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDIFGPEWWGLAAT-DHCPLAKCPIAPGIKVQGCP 559 (561)
Q Consensus 481 vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~~i~~ii~~~~~~~~g~~~~~wwG~n~~-~~~~~~~~~~~~~~~~~~~~ 559 (561)
+|+++++++|||++.||+||||+||||||+|.++++++++|++|++|+ .++||| |++ ++|+..+|+..++...+++|
T Consensus 682 v~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~-~~~WWG-n~~~~~c~~a~cp~~~~v~~~~~~ 759 (761)
T KOG2262|consen 682 VGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI-SLNWWG-NTVSAGCDLAGCPTAKGVVVSGCP 759 (761)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-cccccc-CcCCCCCCccCCCcCCeeecCCCC
Confidence 999999999999999999999999999999999999999999999999 668999 776 48999999999988888887
Q ss_pred CC
Q 008570 560 VA 561 (561)
Q Consensus 560 ~~ 561 (561)
.+
T Consensus 760 ~f 761 (761)
T KOG2262|consen 760 VF 761 (761)
T ss_pred CC
Confidence 64
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=5.4e-136 Score=1133.70 Aligned_cols=514 Identities=36% Similarity=0.794 Sum_probs=499.2
Q ss_pred CccCchhHHHHHHHHhccccccC--cCccchHHHHHHHHHHHHHHhhcccchhhhccccchhhhhccCCcceeeeccccc
Q 008570 1 MWWPANLVQVSLFRALHEEEKRT--KGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQ 78 (561)
Q Consensus 1 ~vwP~~l~t~~l~~slH~~~~~~--~~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~~~~~wi~p~n~~~~~l~G~~~ 78 (561)
|+||++|+|++|+|+||+++++. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|||+|||+|||+++|+||||.+
T Consensus 163 ~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~~~ 242 (681)
T TIGR00727 163 ALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGGST 242 (681)
T ss_pred CcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhcccc
Confidence 79999999999999999865433 3678999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCCccCcCCceeeceeee
Q 008570 79 GLGMGS-FGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRIL 157 (561)
Q Consensus 79 GlGl~~-~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~~d~~g~~y~~s~i~ 157 (561)
|||++| +|||||+|+++.|+|+++|+++++|+++|.++++++++|++||+|.|+++++|++|+++||++|++||+|+|+
T Consensus 243 GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il 322 (681)
T TIGR00727 243 GLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVTEIL 322 (681)
T ss_pred CCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccceee
Confidence 999999 9999999987889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhcCCChhhHHhhhhccCC
Q 008570 158 NEKEFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKKNYEAV 237 (561)
Q Consensus 158 ~~~~~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~~~~~~~D~h~~lm~~~y~ev 237 (561)
+ +|++||+||||||||+|++++++++|+.+||+++++++|++|+|||| +++++|+ ++++|+|.|+||+ ||||
T Consensus 323 ~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~---i~~~~~~---~~~~D~h~rlM~~-Y~ev 394 (681)
T TIGR00727 323 D-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKL---LFNALKD---DDYPDPHSNLMKA-YKEV 394 (681)
T ss_pred C-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHhc---CCCCChhHHHhhc-CCCC
Confidence 9 99999999999999999999999999999999999999999999999 8887763 5678999999999 9999
Q ss_pred ChHHHHHHHHHHHHHHhheeeccccCCCcchHHHHHHHHHHHHHHhhheeEEEeecCCchhHHHHHHhhHhccCCchhHH
Q 008570 238 PQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMYPGKPLAN 317 (561)
Q Consensus 238 P~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~w~~ilal~l~~i~~~~~~~~~g~tg~~p~l~~isqli~g~~~pg~~~an 317 (561)
|+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.+.++|+||+++++|+++|+|+|++.||||++|
T Consensus 395 P~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~ 472 (681)
T TIGR00727 395 PDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLAM 472 (681)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCchHH
Confidence 99999999999999999999888 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchh
Q 008570 318 VAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGD 397 (561)
Q Consensus 318 l~~~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~~~t~p~~ 397 (561)
|+||++++++.+||.+++||||+|||||+|||+||.+|++||++|++|+++|++|++++++|+|+++ ++++||||..
T Consensus 473 ~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftcp~~ 549 (681)
T TIGR00727 473 MIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTCPNA 549 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhheeeccccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHHhhhccCCCcchhhhhH
Q 008570 398 DVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAKAVNYLS 477 (561)
Q Consensus 398 ~~~~~~sv~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~~~~ 477 (561)
++++++||+||++||+|+|++|++|+.++|+|++|+++|++.|+++|++|++ +.|++|.|+++.+.|++||++++|+.+
T Consensus 550 ~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~n~~s 628 (681)
T TIGR00727 550 VVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPYNYMY 628 (681)
T ss_pred cceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchhhHHH
Confidence 9999999999999999999999999999999999999999999999999975 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHhhCCC
Q 008570 478 WGAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 528 (561)
Q Consensus 478 ~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~~i~~ii~~~~~~~~g~ 528 (561)
+.++|+++|+|+||||++||+||||++|||||+|+++++++++|+++++++
T Consensus 629 ~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 629 YTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 999999999999999999999999999999999999999999999999876
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=5.9e-93 Score=799.88 Aligned_cols=482 Identities=37% Similarity=0.763 Sum_probs=442.7
Q ss_pred CccCchhHHHHHHHHhccccccCcCccchHHHHHHHHHHHHHHhhcccchhhhccccchhhhhccCCcceeeeccccccc
Q 008570 1 MWWPANLVQVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQGL 80 (561)
Q Consensus 1 ~vwP~~l~t~~l~~slH~~~~~~~~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~~~~~wi~p~n~~~~~l~G~~~Gl 80 (561)
|+||+++|+++++++||++++. +.+++|+|+|.++|.++|+|+|+|+|+||+|+.++|+||++|+|+.+++++|+.+
T Consensus 134 l~fP~~~a~a~~i~alh~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~-- 210 (624)
T PF03169_consen 134 LPFPSGLATAELINALHSGGGW-REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS-- 210 (624)
T ss_pred ccCcchhHHHHHHHHhccCccc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce--
Confidence 6899999999999999998722 2357999999999999999999999999999999999999999999999988775
Q ss_pred ccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc-CccccCCCCCCCCCccCcCCceeeceeeecc
Q 008570 81 GMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWC-NAFEAQRFPLFSSHTFDSDGQIYNVSRILNE 159 (561)
Q Consensus 81 Gl~~~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~-n~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~ 159 (561)
++||||++ ++|+|+++|+++++|+++|.+++|+++.|++||+ |.|+++++|++|+++||++|+
T Consensus 211 ----~~~dws~~--~~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------- 274 (624)
T PF03169_consen 211 ----FSFDWSPI--LIGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------- 274 (624)
T ss_pred ----eeEeecHH--hcCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------
Confidence 89999996 5899999999999999999999999999999997 999999999999999999887
Q ss_pred CCCccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH------hhhcCCChhhHHhhhh
Q 008570 160 KEFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAA------VKQQFGDVHTRLMKKN 233 (561)
Q Consensus 160 ~~~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~------~~~~~~D~h~~lm~~~ 233 (561)
+|.++|+++|++||+++.+..+.++|+..|+.+++.++|.+++|+|+ +++++++. .+++++|+|++.||+
T Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~- 350 (624)
T PF03169_consen 275 SDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKA---IWQAFKQSKSSQRSSKSSEDDPHYRLMRT- 350 (624)
T ss_pred cccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHH---HHhhhhhhcccccccccccCCchhhhhhh-
Confidence 45688999999999999999999999999999999999999999999 55544332 134678999999998
Q ss_pred ccCCChHHHHHHHHHHHHHHhheeeccccCCCcchHHHHHHHHHHHHHHhhheeEEEeecCCc--hhHHHHHHhhHhccC
Q 008570 234 YEAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQP--GLNIITEMVIGYMYP 311 (561)
Q Consensus 234 y~evP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~w~~ilal~l~~i~~~~~~~~~g~tg~~p--~l~~isqli~g~~~p 311 (561)
|||+|+|||+.++++++++++++++.++.++++|+|+.++++++++++++|.++++|+||+|| ++++++|+++|++.|
T Consensus 351 ~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~p 430 (624)
T PF03169_consen 351 YKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLP 430 (624)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHh
Confidence 999999999999999999999999888655899999999999999999999999999999988 899999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 008570 312 GKPLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSP 391 (561)
Q Consensus 312 g~~~anl~~~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~~ 391 (561)
|++++||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|+++++++++++ +.++.|.++ +++.
T Consensus 431 g~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~ 505 (624)
T PF03169_consen 431 GNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDS 505 (624)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---cccc
Confidence 99999999999999999999999999999999999999999999999999999999999877 567778765 5568
Q ss_pred cccchhHHHHhhhhhheeeccccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHHhhhccCCCcc
Q 008570 392 WTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAK 471 (561)
Q Consensus 392 ~t~p~~~~~~~~sv~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~ 471 (561)
++||.+|+.++++++||++||+| +.+|..+++++++|++++++.++++|++|+. +++.|...+++.+
T Consensus 506 ~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~~~~~~~~~~~~~ 572 (624)
T PF03169_consen 506 FSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------LAFGGASSIGFYL 572 (624)
T ss_pred CcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------heeeecccccccc
Confidence 99999999999999999999877 7899999999999999999999999988842 3344455555566
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 008570 472 AVNYLSWGAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLYFTL 523 (561)
Q Consensus 472 ~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~~i~~ii~~~~~ 523 (561)
+.++++++++|.++++++||||++||+||||++|||||+||+++++++++++
T Consensus 573 ~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 573 PSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred hhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999999999999999999999998763
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.4e-91 Score=790.79 Aligned_cols=489 Identities=40% Similarity=0.762 Sum_probs=440.4
Q ss_pred CccCchhHHHHHHHHhccccccCc-CccchHHHHHHHHHHHHHHhhcccchhhhccccchhhhhccCCcceeeecccccc
Q 008570 1 MWWPANLVQVSLFRALHEEEKRTK-GGLTRLQFFVIVFISSFAYYVVPGYLFPSISALSFVCWIWKDSVTAQKLGSGLQG 79 (561)
Q Consensus 1 ~vwP~~l~t~~l~~slH~~~~~~~-~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~~~~~wi~p~n~~~~~l~G~~~G 79 (561)
|+||+++|+++|+|+||++.+.++ ++++| +...+ |.++|+.+..++|+||+.|+++.++ +|| |
T Consensus 154 l~~P~~la~a~l~~al~~~~~~~~g~~~~r---~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 154 LPWPSGLATAELFKALHGKFHTANGDTIAK---NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccCCcccHHHHHHHHhhhccCccCCCccch---hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 689999999999999986543332 33444 22222 7788888889999999999988875 455 8
Q ss_pred cccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCCccCcCCceeec-eeeec
Q 008570 80 LGMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNV-SRILN 158 (561)
Q Consensus 80 lGl~~~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~~d~~g~~y~~-s~i~~ 158 (561)
+|+++++|||+++++++|+|+++|+++++|+++|.+++|+++.|++||+|+|.++++|.+|++.+|++|.+|+. ++|++
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~ 297 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVV 297 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEe
Confidence 89999999999987789999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred cCC-CccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhcCCChhhHHhhh-----
Q 008570 159 EKE-FSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFGDVHTRLMKK----- 232 (561)
Q Consensus 159 ~~~-~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~~~~~~~D~h~~lm~~----- 232 (561)
++ .++|+++|++|||+|+++++ |+.+|+.++++++|.+++|+|+ +++++|+.. ++++|.|.|+||+
T Consensus 298 -~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~d~~ 369 (654)
T TIGR00728 298 -DGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRD---IISARRDHY-KLGRDDHVRLLSRDEDLK 369 (654)
T ss_pred -CCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHH---HHHHHHHhh-hccCCCChHHHhhccccc
Confidence 66 69999999999999999999 8999999999999999999999 777776552 3445666666555
Q ss_pred --hccCCChHHHHHHHHHHHHHHhheeeccccCCCcchHHHHHHHHHHHHHHhhheeEEEeecCCchhHHHHHHhhHhcc
Q 008570 233 --NYEAVPQWWFHAILIITFALSLFTCEGFDKQFQLPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVIGYMY 310 (561)
Q Consensus 233 --~y~evP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~w~~ilal~l~~i~~~~~~~~~g~tg~~p~l~~isqli~g~~~ 310 (561)
.|+|+|+|||+.++++++++++++++.++..+++|||+++++++++++|++|.++++|+||...++++++|+++|++.
T Consensus 370 ~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 370 VKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 049999999999999999999998888855578999999999999999999999999999777799999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 008570 311 PGKPLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGS 390 (561)
Q Consensus 311 pg~~~anl~~~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~ 390 (561)
||+|++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|++++++|++|+++++++ +++
T Consensus 450 pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~ 521 (654)
T TIGR00728 450 PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNN 521 (654)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887753 456
Q ss_pred CcccchhHHHHhhhhhheeeccccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHHhhhccCCCc
Q 008570 391 PWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSA 470 (561)
Q Consensus 391 ~~t~p~~~~~~~~sv~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~ 470 (561)
.|+||.+++++++|++||++||+ +|+.+++|..+.|++++| +++++.+++||++|+ +.+++|+|+++.+...+||.
T Consensus 522 ~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~ 597 (654)
T TIGR00728 522 NFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPA 597 (654)
T ss_pred CccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCc
Confidence 89999999999999999999999 999999999999999999 899999999999986 57899999877777777888
Q ss_pred chhhhhHHHHHHHHHHHHHHhcCcchh--hhhhhhhhhhhhhhhHHHHHHHHHHHhh
Q 008570 471 KAVNYLSWGAVGIFFNYYVYRRFKGWW--ARHTYILSAALDAGVAFMGVFLYFTLQS 525 (561)
Q Consensus 471 ~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kynyvlaAgL~aG~~i~~ii~~~~~~~ 525 (561)
++.++.++.++|.++++++|||+++|| +||||++||||||||+|+++++||++++
T Consensus 598 ~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 598 TAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 888889999999999999999988877 9999999999999999999999999874
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=3.2e-47 Score=420.63 Aligned_cols=432 Identities=15% Similarity=0.130 Sum_probs=305.1
Q ss_pred ccCchhHHHHHHHHhccccccCcCccchHHHHHHHHHHHHHHhhcccchhhhccccc--hhhhhccCCcceeeecccccc
Q 008570 2 WWPANLVQVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISALS--FVCWIWKDSVTAQKLGSGLQG 79 (561)
Q Consensus 2 vwP~~l~t~~l~~slH~~~~~~~~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~~--~~~wi~p~n~~~~~l~G~~~G 79 (561)
-||++.|++.++++-.+ . + ..+|.|.+...+..+++|.++++ +..++ .-.|.. . |
T Consensus 123 ~fP~G~A~Ae~l~~g~~---g-~-~~~~~~~l~~g~~~s~~~~~~~~-----~~~~~~~~~~~~~---------~----g 179 (591)
T TIGR00733 123 PYPEGVACAEVLKAGDK---A-R-NGTGAKPIAYGGILASIYAFLGS-----LRVWSGTLSAAKL---------V----G 179 (591)
T ss_pred CCCCHHHHHHHHHcccc---c-c-chhhHHHHHHHHHHHHHHHHHHH-----hccCCchHHHHHh---------c----C
Confidence 59999999999996322 1 1 23678889999999999998843 22221 111211 1 1
Q ss_pred cccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCCccCcCCceeeceeeecc
Q 008570 80 LGMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRILNE 159 (561)
Q Consensus 80 lGl~~~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~ 159 (561)
.+...+++|||+ +++|.|+++|+++.+++++|.+++|+++.|++..+++. ..+.|.
T Consensus 180 ~~~~~~~~~~Sp--alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~~--------------------- 235 (591)
T TIGR00733 180 RRALYFGSDLSL--ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLSA--------------------- 235 (591)
T ss_pred CcceEEEecccH--HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccH---------------------
Confidence 112235689999 79999999999999999999999999999999765431 100000
Q ss_pred CCCccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhcCC-ChhhHHhhhhccCCC
Q 008570 160 KEFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQQFG-DVHTRLMKKNYEAVP 238 (561)
Q Consensus 160 ~~~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~~~~~~~-D~h~~lm~~~y~evP 238 (561)
.+ ....+..+.+||++++.|+.. -.+.+++..|+ +++++|+..+..++ +.+.+..|+ ++|+|
T Consensus 236 --~~-~~~~vw~~~vR~iGvg~m~~~----------gl~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~-~~dip 298 (591)
T TIGR00733 236 --LD-LAWTIWSTKVRYIGVGAIVVA----------ALWTLLKLRGP---IARGIKAGLEAARRRQAGEAVLRT-EEDLP 298 (591)
T ss_pred --HH-HHHHHHhcccchhhHHHHHHH----------HHHHHHHHHHH---HHHHHHHHHHHhcccccccccccc-ccccc
Confidence 00 011223356999999988632 23345566666 66666554322111 111123455 89999
Q ss_pred hHHHHHHHHHHHHHHhheeeccccCCCcc--------h-HHHHHHHHHHHHHHhhheeEEEe--ecCCc--hhHHHHHHh
Q 008570 239 QWWFHAILIITFALSLFTCEGFDKQFQLP--------W-WGLLLACAMAFFFTLPVGVIQAT--TNLQP--GLNIITEMV 305 (561)
Q Consensus 239 ~ww~~~~~v~~~~~~~~~~~~~~~~~~lp--------~-w~~ilal~l~~i~~~~~~~~~g~--tg~~p--~l~~isqli 305 (561)
.|+...++++. ++. . .+..++.| + .+.+++++++|+++..++|+.|+ ||.|| ++++++|++
T Consensus 299 ~~~v~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~ 372 (591)
T TIGR00733 299 INIVLTLVALF-VIP---L--ADFLLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLF 372 (591)
T ss_pred HHHHHHHHHHH-HHH---H--HHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH
Confidence 99755443332 222 1 11123333 3 57799999999999999999999 77799 899999999
Q ss_pred hHhcc------------CCchhHHHHHHHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHH
Q 008570 306 IGYMY------------PGKPLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWL 373 (561)
Q Consensus 306 ~g~~~------------pg~~~anl~~~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~l 373 (561)
++.+. |+...+|++.+++.+.+++||+|++||||+||+++++||+||++|++|+++|+++.++++.++
T Consensus 373 ~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll 452 (591)
T TIGR00733 373 TALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLL 452 (591)
T ss_pred HHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 345678999999999999999999999999999999999999999999999999999999766
Q ss_pred HhhccccCCCCCCCCCCCcccchhHHHHhhhhhheeeccccccCCCCChhhHHHHH-HHHHHHHHHHHHhhhhcCCcccc
Q 008570 374 LTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFF-LIGFLAPFPVWLLSRKFPEKKWI 452 (561)
Q Consensus 374 l~~~~~~~~~~ll~~~~~~t~p~~~~~~~~sv~wg~~gp~~lf~~g~~y~~~~~~~-~iG~~~pi~~~~l~r~~p~~~~~ 452 (561)
.+.+ ++..+.-.++++.+++|++..+ ++++.|++++ . ++|.+ .+|+++.++..++++..++++
T Consensus 453 ~~ay-g~~~~~~~~~~~~l~APqA~l~--~ava~gi~~~------~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~-- 516 (591)
T TIGR00733 453 IKAY-GIAGTPTAKGENALPAPQAFLM--AAVTEGVFTG------T-----LEWTMVFIGAGIGIALIIIDEILAKRG-- 516 (591)
T ss_pred HHHh-cccccccCCCccccCCCHHHHH--HHHHhhhcCC------C-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence 6655 4422111224566889987776 5566666542 2 35543 466776766666665554332
Q ss_pred cccchhHHHhhhccCCCcchhhhhHHHHHHHHHHHHHHhcCcch------hhhhhhhhhhhhhhhhHHHHHHHHHH
Q 008570 453 KNIHMPLLLAGPGSLPSAKAVNYLSWGAVGIFFNYYVYRRFKGW------WARHTYILSAALDAGVAFMGVFLYFT 522 (561)
Q Consensus 453 ~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~kynyvlaAgL~aG~~i~~ii~~~~ 522 (561)
+++..|.+++|+|+|.|. +++..+++|.+..++|+||+++- -++|.+++||||++||+++|++++..
T Consensus 517 ~~~~~p~lavgig~yLP~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~ 589 (591)
T TIGR00733 517 SKFRTPVMAVGVGIYLPL---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAI 589 (591)
T ss_pred cccCCchhHHHHHhhcch---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHH
Confidence 345568899999999875 36899999999999999875531 14679999999999999999998653
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4e-33 Score=296.02 Aligned_cols=443 Identities=15% Similarity=0.119 Sum_probs=302.4
Q ss_pred cCchhHHHHHHHHhccccccCcCccchHHHHHHHHHHHHHHhhcccchhhhcccc--chhhhhccCCcceeeeccccccc
Q 008570 3 WPANLVQVSLFRALHEEEKRTKGGLTRLQFFVIVFISSFAYYVVPGYLFPSISAL--SFVCWIWKDSVTAQKLGSGLQGL 80 (561)
Q Consensus 3 wP~~l~t~~l~~slH~~~~~~~~~~sr~~~f~~~f~~~f~~~~~p~y~~p~L~~~--~~~~wi~p~n~~~~~l~G~~~Gl 80 (561)
||++.|++.++++..+++.+. +..|-..+......+|.++.+= +.-+ ++-+|+. . |-
T Consensus 138 yPeGvAaAEvL~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~g----~~~~~~~~~~~~~----------~---~~ 196 (624)
T COG1297 138 YPEGVAAAEVLKAGNQREGDA----SGIKLIALGGALAALYSLLASG----LRVIASSLSAAFS----------V---GR 196 (624)
T ss_pred CCCchhHHHHHHhcCCCCCCc----ccchhhhhhhHHHHHHHHHhcc----ceeehhhHHHHHH----------h---cc
Confidence 899999999999987443221 4556677777778888877551 1111 1112222 1 11
Q ss_pred ccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCCccCcCCceeeceeeeccC
Q 008570 81 GMGSFGLDWATVAGFLGSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQRFPLFSSHTFDSDGQIYNVSRILNEK 160 (561)
Q Consensus 81 Gl~~~tfDW~~i~a~~g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~~ 160 (561)
+..-+..|.++ +++|.|+++++.+.+-++.|.+++|.+..|++-+... .|. |. .+
T Consensus 197 ~~~~lg~~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~-----~p~------~~---~~--------- 251 (624)
T COG1297 197 AAFALGLGLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVP-----GPS------DQ---EA--------- 251 (624)
T ss_pred hhhhhcccccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhccc-----CCC------ch---hH---------
Confidence 11223445566 6899999999999999999999999999998854433 111 00 00
Q ss_pred CCccCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhh---cCCChhhHHhhhhccCC
Q 008570 161 EFSFDREAYDNYSRLYLSVLFAFIYGLGFATLMASISHVALFEGKTIWQMWRKTTAAVKQ---QFGDVHTRLMKKNYEAV 237 (561)
Q Consensus 161 ~~~l~~~~y~~ysp~y~~~~~~~~~~~~fa~l~~~i~~~~l~~~k~i~~i~~~~~~~~~~---~~~D~h~~lm~~~y~ev 237 (561)
.+ +.-++...-.||++++.+. ..-+|+++...|+ +.|..+++.+. +++.. +..|+ ++|+
T Consensus 252 -~~-~a~~vW~s~VrfIGaG~i~----------i~~~wtl~~l~~p---i~~gi~~~f~~~r~~~~~~--~~~rt-e~Dl 313 (624)
T COG1297 252 -GV-QAWKVWSSKVRFIGAGAIA----------IAAIWTLISLLGP---ILRGIKATFESARGRRRAG--AVSRT-ERDL 313 (624)
T ss_pred -HH-HHHHHhhheeEEeehhHHH----------HHHHHHHHHHHhH---HHHHHHHHHHHhhcccccc--cccch-hhcC
Confidence 00 1122333447999998874 2335666677777 55555443211 11111 11256 8999
Q ss_pred ChHHHHHHHHHHHHHHhheeeccccCC-------CcchHHHHHHHHHHHHHHhhheeEEEeecC--Cc--hhHHHHHHhh
Q 008570 238 PQWWFHAILIITFALSLFTCEGFDKQF-------QLPWWGLLLACAMAFFFTLPVGVIQATTNL--QP--GLNIITEMVI 306 (561)
Q Consensus 238 P~ww~~~~~v~~~~~~~~~~~~~~~~~-------~lp~w~~ilal~l~~i~~~~~~~~~g~tg~--~p--~l~~isqli~ 306 (561)
|..|-...++...+..+......-..+ .+-.-+.+++++++|.++..+|++.|..|. +| ++.+++.++.
T Consensus 314 ~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~ 393 (624)
T COG1297 314 PPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLL 393 (624)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Confidence 998877666655444333333322111 223667788899999999999999999887 45 7888888777
Q ss_pred Hhcc------------CCc----hhHHHHHHHHHHHHHHhhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHH
Q 008570 307 GYMY------------PGK----PLANVAFKTYGYISMVQALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTA 370 (561)
Q Consensus 307 g~~~------------pg~----~~anl~~~~~~~~~~~qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~ 370 (561)
+.++ |.+ ...+++.+++.+.++.+++|++||||+||+++++||+||.+|++|+++++++..+|+
T Consensus 394 ~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL 473 (624)
T COG1297 394 SLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVL 473 (624)
T ss_pred HHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHH
Confidence 4443 221 156777799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCCcccchhHHHHhhhhhheeeccccccCCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcc
Q 008570 371 WWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFTNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKK 450 (561)
Q Consensus 371 ~~ll~~~~~~~~~~ll~~~~~~t~p~~~~~~~~sv~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~ 450 (561)
+.+.+. .++..+. ..+....|..|+..++++..| +|+...+|..+..+.++|+.+..+.+.+++++
T Consensus 474 ~ll~~a-Ygf~ga~---~r~~~~l~apqa~lma~ia~G------vf~~~lew~mi~~g~~~gi~lI~id~~l~~~~---- 539 (624)
T COG1297 474 ELLNKA-YGFAGAP---PRQGMDLAAPQATLMATIAKG------VFTGNLEWSMILAGAGIGIVLIGIDERLKGRG---- 539 (624)
T ss_pred HHHHHH-hCcCCCC---CCCCCCCcchHHHHHHHHhcc------cCCCCcchHHHHHHHhHhheeeeccHHHhcCC----
Confidence 866554 4443221 111111455567777777644 46667778888777778888888887776542
Q ss_pred cccccchhHHHhhhccCCCcchhhhhHHHHHHHHHHHHHHhcC-------cchhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 008570 451 WIKNIHMPLLLAGPGSLPSAKAVNYLSWGAVGIFFNYYVYRRF-------KGWWARHTYILSAALDAGVAFMGVFLYFTL 523 (561)
Q Consensus 451 ~~~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~-------~~w~~kynyvlaAgL~aG~~i~~ii~~~~~ 523 (561)
.+...|++++|+|.+.|. ..++.+++|.+..+.+.|++ .+.-++.++++||||+.||++++++++...
T Consensus 540 --~~~~lpvlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii 614 (624)
T COG1297 540 --GKLRLPVLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALII 614 (624)
T ss_pred --ccccccceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHh
Confidence 233479999999999663 35688899999888877763 234456789999999999999999997766
Q ss_pred hhCCC
Q 008570 524 QSQDI 528 (561)
Q Consensus 524 ~~~g~ 528 (561)
...|.
T Consensus 615 ~~~g~ 619 (624)
T COG1297 615 VGSGK 619 (624)
T ss_pred eecCC
Confidence 65544
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=89.10 E-value=7.3 Score=44.65 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHhhheeEEEeecCCchhHHHHHHhh----Hhc---------cCC--chhHHHHHHHHHHHHHH--
Q 008570 267 PWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMVI----GYM---------YPG--KPLANVAFKTYGYISMV-- 329 (561)
Q Consensus 267 p~w~~ilal~l~~i~~~~~~~~~g~tg~~p~l~~isqli~----g~~---------~pg--~~~anl~~~~~~~~~~~-- 329 (561)
.+-++++.++++.+++....+..-.+|..+..+++.|++. -.+ .|| ++..|.+..+.+..+..
T Consensus 3 T~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~~~ 82 (624)
T PF03169_consen 3 TFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGGMA 82 (624)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 3445555555666666555555555555554444444432 111 134 56677777666665555
Q ss_pred hhhhhhhhchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHH
Q 008570 330 QALGFLGDFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTA 370 (561)
Q Consensus 330 qa~~~~~DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~ 370 (561)
.+.+++.-+..-.+++. +.-+..|++-++.+.++.++..
T Consensus 83 ~a~~~i~~ipa~~~~~~--~~~~~~~~l~~~~~~~lG~~~a 121 (624)
T PF03169_consen 83 YAAGFIAAIPALLFLGQ--PFSFGYLILWTLSTQLLGYGFA 121 (624)
T ss_pred hhhhHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhhh
Confidence 66666655444444432 3355555555555555554443
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=84.79 E-value=63 Score=36.94 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=125.8
Q ss_pred cchHHHHHHHHHHHHHHhhheeEEEeecCCchhHHHHHHh----hHhccCCchhHHHHHHHHHHHHHHhhhhhhhhc---
Q 008570 266 LPWWGLLLACAMAFFFTLPVGVIQATTNLQPGLNIITEMV----IGYMYPGKPLANVAFKTYGYISMVQALGFLGDF--- 338 (561)
Q Consensus 266 lp~w~~ilal~l~~i~~~~~~~~~g~tg~~p~l~~isqli----~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~Dl--- 338 (561)
+.+-++++.++++.+++..+.|+.=.+|..++.++.+-++ .-.+.+.++..|.+..+.+..+.+.++ +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567888999999999999999888888887555544443 333445677888887777666555542 22221
Q ss_pred -hhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhHHHHhhhhhheeeccccccC
Q 008570 339 -KLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMFT 417 (561)
Q Consensus 339 -KlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~~~t~p~~~~~~~~sv~wg~~gp~~lf~ 417 (561)
.+|+.-+.|...+...=+.|.++|.+...+.-+.++.+ + +.+-|...+- +-++- .|.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~------~-------~L~fP~G~A~--Ae~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE------S-------KLPYPEGVAC--AEVLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------C-------CCCCCCHHHH--HHHHH--cccccc--
Confidence 23333344667777777789999999988865544321 1 2233433222 11111 111100
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhhhhcCC----------cccccccchhHHHhhhccCCCcchhhhhHHHHHHHHHHH
Q 008570 418 NYGNYPQMNWFFLIGFLAPFPVWLLSRKFPE----------KKWIKNIHMPLLLAGPGSLPSAKAVNYLSWGAVGIFFNY 487 (561)
Q Consensus 418 ~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~----------~~~~~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 487 (561)
.+..-..+..++.++.+..+.. - -|.+|. +.+.-.++......|.|++.+- +....+++|.++.|
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFLG-S-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-H-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHHH
Confidence 0112234455555555544431 1 123331 0111123555567899998542 34566777777765
Q ss_pred H-----HHhc--Ccc----h------hhhhhhhhhhhhhhhhHHHHHHH
Q 008570 488 Y-----VYRR--FKG----W------WARHTYILSAALDAGVAFMGVFL 519 (561)
Q Consensus 488 ~-----~rr~--~~~----w------~~kynyvlaAgL~aG~~i~~ii~ 519 (561)
. ++++ .+. + |.+|---++.|...+.++..++.
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 4 2221 110 1 21111116899999999999875
No 9
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=72.24 E-value=40 Score=35.64 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=45.8
Q ss_pred hHHHHHHhhHhccCCchhHHHHHHHHHHHHHHhh-hhhhhhchhhhhcCCChhhHHHHHHHhH----HHhHHHHHHHHH
Q 008570 298 LNIITEMVIGYMYPGKPLANVAFKTYGYISMVQA-LGFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTAW 371 (561)
Q Consensus 298 l~~isqli~g~~~pg~~~anl~~~~~~~~~~~qa-~~~~~DlKlG~y~k~pPr~~f~~Q~iGt----ivg~~v~~~v~~ 371 (561)
+..+--.+.++..-| + .-...-.++....+|- .+++...=+|+-+|++|=..+.+.+.|. ++|.++.+.++.
T Consensus 255 i~~ip~~i~al~~~~-~-~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 255 IGLIPAVIIALLQGG-P-WGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred HHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544 2 2233344455555544 4457777899999999999999999877 455555655553
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=47.71 E-value=2e+02 Score=29.62 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=30.2
Q ss_pred hhhhhhchhhhhcCCChhhHHHHHHHhHH----HhHHHHHHHH
Q 008570 332 LGFLGDFKLGHYMKVPPKSMFVVQLVGTI----VASTVYFGTA 370 (561)
Q Consensus 332 ~~~~~DlKlG~y~k~pPr~~f~~Q~iGti----vg~~v~~~v~ 370 (561)
.+.++-.=.|.-+++||=..+.+.+.|.- +|.++.+.++
T Consensus 287 ~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 287 RQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777999999999999999998874 4555555554
No 11
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=43.99 E-value=3.1e+02 Score=28.14 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhh-hhhhhchhhhhcCCChhhHHHHHHHhHH----HhHHHHHHHHH
Q 008570 318 VAFKTYGYISMVQAL-GFLGDFKLGHYMKVPPKSMFVVQLVGTI----VASTVYFGTAW 371 (561)
Q Consensus 318 l~~~~~~~~~~~qa~-~~~~DlKlG~y~k~pPr~~f~~Q~iGti----vg~~v~~~v~~ 371 (561)
.....+.....+|-. +.++-.=.|+-+|+||-..+.+.+.|.. +|.++.+.++.
T Consensus 259 ~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~ 317 (327)
T PF01594_consen 259 ALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILA 317 (327)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444555555544 4455566799999999999999999874 46666666654
No 12
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=40.60 E-value=3.2e+02 Score=28.76 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred HHHHHHHhh-hhhhhhchhhhhcCCChhhHHHHHHHhH----HHhHHHHHHHH
Q 008570 323 YGYISMVQA-LGFLGDFKLGHYMKVPPKSMFVVQLVGT----IVASTVYFGTA 370 (561)
Q Consensus 323 ~~~~~~~qa-~~~~~DlKlG~y~k~pPr~~f~~Q~iGt----ivg~~v~~~v~ 370 (561)
+.+...+|. .++++-.=+|+-++++|=..+.+.++|. ++|.++.+++.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555 5677888899999999999999999987 45556666655
No 13
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=24.25 E-value=1.5e+02 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.048 Sum_probs=25.1
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q 008570 413 LRMFTNYGNYPQMNWFFLIGFLAPFPVWLLS 443 (561)
Q Consensus 413 ~~lf~~g~~y~~~~~~~~iG~~~pi~~~~l~ 443 (561)
||+|+.++.|.-..-+.+.|++..++..++.
T Consensus 41 rRilGdgKTwrG~i~gvl~g~l~g~i~~~l~ 71 (175)
T PF01864_consen 41 RRILGDGKTWRGFIGGVLAGTLVGIIQGLLL 71 (175)
T ss_pred CEecCCCCeEEeeeHHHHHHHHHHHHHHHHh
Confidence 8999999999877777778888887777664
No 14
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=22.44 E-value=3.6e+02 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.5
Q ss_pred hhHHHHHHHhH-HHhHHHHHHHHHHHHh
Q 008570 349 KSMFVVQLVGT-IVASTVYFGTAWWLLT 375 (561)
Q Consensus 349 r~~f~~Q~iGt-ivg~~v~~~v~~~ll~ 375 (561)
..-..+|++|| ++|+++++.++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45568999999 6999999999988764
No 15
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=21.76 E-value=6.1e+02 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 008570 426 NWFFLIGFLAPFPVWLLSRKFP 447 (561)
Q Consensus 426 ~~~~~iG~~~pi~~~~l~r~~p 447 (561)
+....+|..+|+..|+.+-.+|
T Consensus 314 L~lay~g~al~l~i~~~~~~~~ 335 (385)
T COG5438 314 LLLAYLGGALPLLILFLRNNYS 335 (385)
T ss_pred HHHHHHHhhHHHHHHHHHcCCc
Confidence 3444588889999998866555
Done!