Query 008570
Match_columns 561
No_of_seqs 148 out of 1194
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nq2_A Hypothetical ABC transp 28.5 4.5E+02 0.016 26.2 15.5 113 337-498 224-336 (337)
2 3iyz_A Aquaporin-4; water tran 26.0 5.2E+02 0.018 26.0 12.0 22 346-367 171-192 (340)
3 1v54_K IHQ, cytochrome C oxida 25.9 1.6E+02 0.0056 21.4 5.5 36 490-528 3-38 (56)
4 2y69_K Cytochrome C oxidase po 23.4 1.6E+02 0.0056 23.0 5.5 36 490-528 27-62 (80)
5 2l8s_A Integrin alpha-1; trans 21.3 1.8E+02 0.0061 21.3 5.1 38 97-134 2-39 (54)
6 3h3g_B Parathyroid hormone-rel 12.5 1.2E+02 0.0042 18.4 1.9 18 334-360 3-20 (24)
7 2jwa_A Receptor tyrosine-prote 11.5 1.3E+02 0.0046 21.0 2.2 19 477-495 23-41 (44)
8 2ks1_B Epidermal growth factor 9.2 2.5E+02 0.0085 19.6 2.9 16 480-495 26-41 (44)
9 2l2t_A Receptor tyrosine-prote 9.1 2.5E+02 0.0086 19.6 2.9 17 479-495 24-40 (44)
10 1iij_A ERBB-2 receptor protein 7.6 98 0.0034 20.6 0.2 18 476-493 18-35 (35)
No 1
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.48 E-value=4.5e+02 Score=26.18 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=58.0
Q ss_pred hchhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhHHHHhhhhhheeecccccc
Q 008570 337 DFKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGSPWTCPGDDVFYNASIIWGVVGPLRMF 416 (561)
Q Consensus 337 DlKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~~~t~p~~~~~~~~sv~wg~~gp~~lf 416 (561)
|=...+-+|+++|..-..-++-+.+-+-+.+.+. + +. .=-.+-.|+.. ++++
T Consensus 224 g~~~A~~lGv~v~~~r~~~l~l~all~a~ava~v--------G---~I---~fvGLivPhia--------------r~l~ 275 (337)
T 2nq2_A 224 DEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS--------G---SI---GWVGLIIPHLS--------------RMLV 275 (337)
T ss_dssp CHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH--------C---CC---CSSTTHHHHHH--------------HHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHh--------H---HH---HHHHHHHHHHH--------------HHHh
Confidence 5556888999999876655554444433333322 1 11 00012345421 3445
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhhhcCCcccccccchhHHHhhhccCCCcchhhhhHHHHHHHHHHHHHHhcCcch
Q 008570 417 TNYGNYPQMNWFFLIGFLAPFPVWLLSRKFPEKKWIKNIHMPLLLAGPGSLPSAKAVNYLSWGAVGIFFNYYVYRRFKGW 496 (561)
Q Consensus 417 ~~g~~y~~~~~~~~iG~~~pi~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w 496 (561)
+++. -..++.+.++|+++-+..-.+.|... ..+.| .+..+.++-+-+|-+.++|++++|
T Consensus 276 g~~~-~~llp~s~l~Ga~~ll~ad~lar~~~------p~elP--------------vG~~taliG~p~fl~ll~r~~~~~ 334 (337)
T 2nq2_A 276 GANH-QSLLPCTMLVGATYMLLVDNVARSLS------DAEIP--------------ISILTALIGAPLFGVLVYKLKRGG 334 (337)
T ss_dssp CSCH-HHHHHHHHHHHHHHHHHHHHHHHHSC------SSCCC--------------HHHHHHHHHHHHHHHHHHCC----
T ss_pred CCCh-hhHHHHHHHHHHHHHHHHHHHHHHhc------ccCCC--------------HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4332 24567899999988887777765421 11222 233455555666777777765555
Q ss_pred hh
Q 008570 497 WA 498 (561)
Q Consensus 497 ~~ 498 (561)
-+
T Consensus 335 ~~ 336 (337)
T 2nq2_A 335 MN 336 (337)
T ss_dssp --
T ss_pred cc
Confidence 43
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=26.04 E-value=5.2e+02 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=14.6
Q ss_pred CChhhHHHHHHHhHHHhHHHHH
Q 008570 346 VPPKSMFVVQLVGTIVASTVYF 367 (561)
Q Consensus 346 ~pPr~~f~~Q~iGtivg~~v~~ 367 (561)
.++...|..|+++|++=.++..
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~Il 192 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFTIF 192 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888876555433
No 3
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=25.93 E-value=1.6e+02 Score=21.41 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=22.9
Q ss_pred HhcCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHhhCCC
Q 008570 490 YRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 528 (561)
Q Consensus 490 rr~~~~w~~kynyvlaAgL~aG~~i~~ii~~~~~~~~g~ 528 (561)
+|+.+...+||+-.+ |.+|..+...+-.+.++-.|+
T Consensus 3 ~k~~p~FHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 38 (56)
T 1v54_K 3 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 38 (56)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCcchhhhcCcee---eecchhhhHhhHhhhheeece
Confidence 456677889996443 456677777776666666677
No 4
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.44 E-value=1.6e+02 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=23.8
Q ss_pred HhcCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHhhCCC
Q 008570 490 YRRFKGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 528 (561)
Q Consensus 490 rr~~~~w~~kynyvlaAgL~aG~~i~~ii~~~~~~~~g~ 528 (561)
+|+.|...+||+-.+ |.+|.++...+-.+.++-.|+
T Consensus 27 ~k~~pdFHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 62 (80)
T 2y69_K 27 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 62 (80)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCchhhhcCcee---eecchhHHHhhHHHhheecce
Confidence 345677889996443 566777777777777777777
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.27 E-value=1.8e+02 Score=21.29 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Q 008570 97 GSPLATPFFAIANILVGFFLFLYILIPIAYWCNAFEAQ 134 (561)
Q Consensus 97 g~pl~~p~~~~~~~~~G~vl~~~ii~P~ly~~n~~~~~ 134 (561)
|.|--+|+|..+-..+|.++-..++.-++|.-|.+.-+
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 56777898886666666555556666577877876533
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=12.48 E-value=1.2e+02 Score=18.35 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.0
Q ss_pred hhhhchhhhhcCCChhhHHHHHHHhHH
Q 008570 334 FLGDFKLGHYMKVPPKSMFVVQLVGTI 360 (561)
Q Consensus 334 ~~~DlKlG~y~k~pPr~~f~~Q~iGti 360 (561)
-+||+| |.||.-++++-+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 468998 999888877653
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.53 E-value=1.3e+02 Score=21.01 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 008570 477 SWGAVGIFFNYYVYRRFKG 495 (561)
Q Consensus 477 ~~~~vG~~~~~~~rr~~~~ 495 (561)
..+++|..+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 5567788888899998754
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.17 E-value=2.5e+02 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcCcc
Q 008570 480 AVGIFFNYYVYRRFKG 495 (561)
Q Consensus 480 ~vG~~~~~~~rr~~~~ 495 (561)
+++....+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4556667788887654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=9.09 E-value=2.5e+02 Score=19.58 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCcc
Q 008570 479 GAVGIFFNYYVYRRFKG 495 (561)
Q Consensus 479 ~~vG~~~~~~~rr~~~~ 495 (561)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34556667788887654
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.57 E-value=98 Score=20.61 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 008570 476 LSWGAVGIFFNYYVYRRF 493 (561)
Q Consensus 476 ~~~~~vG~~~~~~~rr~~ 493 (561)
...+++|..+..|+||||
T Consensus 18 ll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 18 LLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHhheEEeecC
Confidence 455677777788899875
Done!