Query 008570
Match_columns 561
No_of_seqs 148 out of 1194
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 06:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008570.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008570hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 6.7 1.5E+02 0.011 18.0 2.4 15 268-282 18-32 (37)
2 d1v54k_ f.23.5.1 (K:) Mitochon 5.9 3.7E+02 0.027 17.4 5.4 32 494-528 2-33 (49)
3 d1q90m_ f.23.25.1 (M:) PetM su 5.7 1.9E+02 0.014 17.0 2.3 14 506-519 2-15 (34)
4 d1zava1 d.58.62.1 (A:1-177) Ri 4.2 2.7E+02 0.02 22.7 3.4 30 339-368 127-156 (177)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 3.4 2.7E+02 0.019 19.6 2.3 16 508-523 70-85 (86)
6 d1c7ka_ d.92.1.1 (A:) Zinc pro 3.3 1.5E+02 0.011 23.6 0.6 31 338-396 83-114 (132)
7 d1ymga1 f.19.1.1 (A:6-239) Aqu 3.3 2.5E+02 0.018 24.0 2.3 18 353-370 86-103 (234)
8 d1q90a3 f.23.23.1 (A:248-292) 3.2 2.6E+02 0.019 17.9 1.6 20 426-445 8-27 (45)
9 d1zcea1 b.122.1.8 (A:2-147) Hy 2.9 1.7E+02 0.013 23.6 0.7 16 329-344 34-49 (146)
10 d1h2sa_ f.13.1.1 (A:) Sensory 2.6 5.3E+02 0.039 21.6 3.8 28 477-504 13-40 (225)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.72 E-value=1.5e+02 Score=17.96 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q 008570 268 WWGLLLACAMAFFFT 282 (561)
Q Consensus 268 ~w~~ilal~l~~i~~ 282 (561)
.|++++..+++.+|+
T Consensus 18 y~GlLlifvl~vLFs 32 (37)
T d2axtl1 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555556655554
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.94 E-value=3.7e+02 Score=17.39 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=20.0
Q ss_pred cchhhhhhhhhhhhhhhhhHHHHHHHHHHHhhCCC
Q 008570 494 KGWWARHTYILSAALDAGVAFMGVFLYFTLQSQDI 528 (561)
Q Consensus 494 ~~w~~kynyvlaAgL~aG~~i~~ii~~~~~~~~g~ 528 (561)
|...+||+-.+ |.+|..+..-+-.+.++-.|+
T Consensus 2 p~FHdKYGn~v---L~~Ga~fc~avW~yv~TQ~gI 33 (49)
T d1v54k_ 2 PDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 33 (49)
T ss_dssp CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred CccccccCcEE---Eecccchhhhhhhheeeeeee
Confidence 44567885432 455666766666666666676
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.72 E-value=1.9e+02 Score=16.97 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=10.1
Q ss_pred hhhhhhhHHHHHHH
Q 008570 506 AALDAGVAFMGVFL 519 (561)
Q Consensus 506 AgL~aG~~i~~ii~ 519 (561)
|++++|+++..+-+
T Consensus 2 a~fiagta~tmig~ 15 (34)
T d1q90m_ 2 AEFIAGTALTMVGM 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHH
Confidence 67888888766544
No 4
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=4.25 E-value=2.7e+02 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=24.2
Q ss_pred hhhhhcCCChhhHHHHHHHhHHHhHHHHHH
Q 008570 339 KLGHYMKVPPKSMFVVQLVGTIVASTVYFG 368 (561)
Q Consensus 339 KlG~y~k~pPr~~f~~Q~iGtivg~~v~~~ 368 (561)
++-.+.++|.|...++|++|.+-+..-+.+
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 455778999999999999999887665443
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.40 E-value=2.7e+02 Score=19.60 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHH
Q 008570 508 LDAGVAFMGVFLYFTL 523 (561)
Q Consensus 508 L~aG~~i~~ii~~~~~ 523 (561)
+.++.++.|+.+.|++
T Consensus 70 l~a~~G~~gvaiGfa~ 85 (86)
T d2vv5a3 70 VIAVLGAAGLVVGLAL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4444444444444443
No 6
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]}
Probab=3.31 E-value=1.5e+02 Score=23.60 Aligned_cols=31 Identities=23% Similarity=0.549 Sum_probs=21.4
Q ss_pred chhhhhcCCChhhHHHHHHHhHHHhHHHHHHHHHHHHhhccccCCCCCCCCCC-Ccccch
Q 008570 338 FKLGHYMKVPPKSMFVVQLVGTIVASTVYFGTAWWLLTSVEHICNPSLLPEGS-PWTCPG 396 (561)
Q Consensus 338 lKlG~y~k~pPr~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~~~~~~ll~~~~-~~t~p~ 396 (561)
=.+||.+++| +++++.|++ ||+++. .-+|..
T Consensus 83 HE~GH~LGLP---------------------------D~~~GpCS~-LMSG~saG~sCtN 114 (132)
T d1c7ka_ 83 HETGHVLGLP---------------------------DHYQGPCSE-LMSGGGPGPSCTN 114 (132)
T ss_dssp HHHHHHHTCC---------------------------CCTTSCTTC-GGGTTTTCTTCCC
T ss_pred ehhccccCCC---------------------------CCCCCccHH-hhCCCCCCCCCCC
Confidence 3589999999 557899986 576432 345653
No 7
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.25 E-value=2.5e+02 Score=24.00 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.3
Q ss_pred HHHHHhHHHhHHHHHHHH
Q 008570 353 VVQLVGTIVASTVYFGTA 370 (561)
Q Consensus 353 ~~Q~iGtivg~~v~~~v~ 370 (561)
.+|++|.++|+.+...++
T Consensus 86 ~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHHHHHHHHc
Confidence 799999999998877654
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.20 E-value=2.6e+02 Score=17.85 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 008570 426 NWFFLIGFLAPFPVWLLSRK 445 (561)
Q Consensus 426 ~~~~~iG~~~pi~~~~l~r~ 445 (561)
+..|++.+++.=++.+++||
T Consensus 8 ll~F~~~v~laQi~LVLKKK 27 (45)
T d1q90a3 8 LLVFFSFVLLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777664
No 9
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.91 E-value=1.7e+02 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.8
Q ss_pred Hhhhhhhhhchhhhhc
Q 008570 329 VQALGFLGDFKLGHYM 344 (561)
Q Consensus 329 ~qa~~~~~DlKlG~y~ 344 (561)
.||.+++.|+|.|.+.
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 6899999999999754
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=2.61 E-value=5.3e+02 Score=21.59 Aligned_cols=28 Identities=18% Similarity=-0.129 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhh
Q 008570 477 SWGAVGIFFNYYVYRRFKGWWARHTYIL 504 (561)
Q Consensus 477 ~~~~vG~~~~~~~rr~~~~w~~kynyvl 504 (561)
..|..+.++-.+.+|+.+.-++++.++.
T Consensus 13 ~~m~~~tv~F~~~~~~~~~~~r~~~~~~ 40 (225)
T d1h2sa_ 13 IGMLVGTLAFAWAGRDAGSGERRYYVTL 40 (225)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccchhhHHH
Confidence 4556666666666666666556665543
Done!