Query 008571
Match_columns 561
No_of_seqs 215 out of 695
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 13:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2573 Ribosome biogenesis pr 100.0 8E-150 2E-154 1154.2 36.1 452 1-460 1-454 (498)
2 KOG2572 Ribosome biogenesis pr 100.0 5E-126 1E-130 977.7 33.8 402 3-417 1-402 (498)
3 PRK14552 C/D box methylation g 100.0 3.4E-97 7E-102 787.2 34.6 371 3-412 1-376 (414)
4 COG1498 SIK1 Protein implicate 100.0 3.5E-97 8E-102 773.2 32.2 356 46-415 2-357 (395)
5 KOG2574 mRNA splicing factor P 100.0 4E-58 8.7E-63 477.3 12.8 250 165-416 91-340 (492)
6 PF01798 Nop: Putative snoRNA 100.0 1.8E-54 4E-59 404.8 10.0 148 266-413 1-149 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.9 6.3E-22 1.4E-26 155.6 6.5 53 170-222 1-53 (53)
8 PF08156 NOP5NT: NOP5NT (NUC12 99.8 5.8E-20 1.3E-24 151.0 4.7 66 3-69 1-67 (67)
9 KOG2573 Ribosome biogenesis pr 58.0 3.9 8.5E-05 44.9 0.5 15 112-126 62-76 (498)
10 KOG2014 SMT3/SUMO-activating c 55.6 23 0.0005 37.9 5.6 71 245-316 230-304 (331)
11 KOG2572 Ribosome biogenesis pr 53.3 10 0.00022 41.8 2.7 32 282-313 203-234 (498)
12 PF04286 DUF445: Protein of un 47.0 2.5E+02 0.0055 29.1 11.9 45 267-311 278-322 (367)
13 TIGR03060 PS_II_psb29 photosys 36.3 4.9E+02 0.011 26.7 12.6 102 97-202 6-108 (214)
14 KOG0066 eIF2-interacting prote 26.5 28 0.0006 39.4 0.8 12 530-541 156-167 (807)
15 KOG3365 NADH:ubiquinone oxidor 26.4 36 0.00078 32.5 1.4 37 185-222 46-82 (145)
16 PF07913 DUF1678: Protein of u 22.8 1.3E+02 0.0028 29.8 4.5 72 123-199 95-170 (201)
17 TIGR03738 PRTRC_C PRTRC system 22.2 50 0.0011 27.8 1.4 17 190-206 26-42 (66)
18 KOG0964 Structural maintenance 20.4 1.5E+03 0.033 28.4 13.2 164 4-194 539-724 (1200)
19 PF11043 DUF2856: Protein of u 20.1 3.1E+02 0.0067 24.2 5.7 27 113-141 12-38 (97)
No 1
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-150 Score=1154.19 Aligned_cols=452 Identities=67% Similarity=1.044 Sum_probs=433.0
Q ss_pred CccEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHH
Q 008571 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLE 80 (561)
Q Consensus 1 m~~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~ 80 (561)
|++|||||+|+||+||.+++.|+|+..+++|+.++.|+.+|+++|+|.+|.||+++.+||||+|+|++|.+|++|++||+
T Consensus 1 ~~~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe 80 (498)
T KOG2573|consen 1 MMEYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLE 80 (498)
T ss_pred CcceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccCCceEEEecChhhhhhhhhhcc-cccccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHh
Q 008571 81 LNLPKVKEGKKAKFSLGVSEPKIGSHIFEETK-IPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAK 159 (561)
Q Consensus 81 ~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lg-i~c~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~K 159 (561)
.|+|++ |+.+.+|||+|++||.+|++.++ |+|++++.|+|||||+|.||++|+++|++.|+.++||||||+|||+|
T Consensus 81 ~nlpK~---kkkk~sLgi~d~kLg~~i~E~~~~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaK 157 (498)
T KOG2573|consen 81 LNLPKV---KKKKVSLGIGDSKLGISIKEAFPKIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAK 157 (498)
T ss_pred hhChhh---hcCceeeccCcchhhhHHHhhccCcccccchhHHHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhh
Confidence 999974 56679999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcC
Q 008571 160 VKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILG 239 (561)
Q Consensus 160 vk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~ 239 (561)
|+||++|+|+||||+|.||||||+|||+|+||||||||||||||.+||+||+.|+++|++|+++..++++.+.++.+.|+
T Consensus 158 VkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~ 237 (498)
T KOG2573|consen 158 VKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLG 237 (498)
T ss_pred eeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred -ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCc
Q 008571 240 -DEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSL 318 (561)
Q Consensus 240 -~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL 318 (561)
+.+.+++|++|+++|||++||+.||.||..||++|.+|.+||++|.+||.++|+.|||||++|||+.||||||||||||
T Consensus 238 ~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsL 317 (498)
T KOG2573|consen 238 VDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSL 317 (498)
T ss_pred CcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhcccc
Confidence 5666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHH
Q 008571 319 TNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGE 398 (561)
Q Consensus 319 ~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~ 398 (561)
+||||+||||+|||||||||||+|||++||||||+||||+||++|..+++|||+||||+|||||+|||||++.|++.||+
T Consensus 318 tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe 397 (498)
T KOG2573|consen 318 TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGE 397 (498)
T ss_pred chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhhccccccccCCcchhhhhhcccccccchhh
Q 008571 399 KLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNVITTFSNADTEMKEAATDTSGKKSKK 460 (561)
Q Consensus 399 ~lr~~ie~rl~~l~~~~~p~kn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (561)
.||+|||+||++|++|..|++|++||++|++.+.. ++++.+...+...++.+.++.+
T Consensus 398 ~Lr~qVEeRL~fy~tg~~p~kn~~vmkea~e~~~~-----~~~~~~~e~e~~~~e~~ek~~e 454 (498)
T KOG2573|consen 398 KLREQVEERLEFYETGEAPRKNSDVMKEAMEAYNG-----ISRDSAPEDEASAKEKPEKDEE 454 (498)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHHHHHhcc-----cccccchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999874 5666665555555444444433
No 2
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-126 Score=977.73 Aligned_cols=402 Identities=46% Similarity=0.770 Sum_probs=385.4
Q ss_pred cEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHHhh
Q 008571 3 LYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELN 82 (561)
Q Consensus 3 ~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~n 82 (561)
||||||||+|||||++.+...+ .+++++|+-|.+++...++|+|++|..|.++.+||++.+.|.+|.+|..|++||+.+
T Consensus 1 mlvL~Eta~Gya~fk~~de~kl-~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~ 79 (498)
T KOG2572|consen 1 MLVLFETAAGYALFKVLDEKKL-ANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLN 79 (498)
T ss_pred CeEEEeeccceeeeeecchhhH-hhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhh
Confidence 6999999999999999864443 478999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccccCCceEEEecChhhhhhhhhhcccccccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhc
Q 008571 83 LPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKF 162 (561)
Q Consensus 83 lpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk~ 162 (561)
.. +++|+|+|++||..|++.+++.|+++++|.+|+||||.|++.|++++.+.|+..|.|||+|+++|+||+|
T Consensus 80 ~~--------~etLaVaD~KLgn~i~ekL~~~~v~~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkf 151 (498)
T KOG2572|consen 80 KK--------KETLAVADAKLGNAIKEKLSINCVHDSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKF 151 (498)
T ss_pred cc--------CCeeeeccHHHhHHHHHhhcceeecchhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhccc
Confidence 42 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChH
Q 008571 163 NVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDED 242 (561)
Q Consensus 163 s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~ 242 (561)
+|+++|+||||||+|||+||+++|+|+||||||||||||||.+||.||+.|+++|+.+|+|.++...+++ ++++ ++
T Consensus 152 s~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~s---Eil~-ee 227 (498)
T KOG2572|consen 152 SPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFS---EILP-EE 227 (498)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHH---hhch-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877655 4666 45
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhc
Q 008571 243 KAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLA 322 (561)
Q Consensus 243 ~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LA 322 (561)
....+..||.+|||+++++.|+.+|..+|++|+++.+||.+|.+||.+||..||||||+|||++||||||+|||||.|||
T Consensus 228 iE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLa 307 (498)
T KOG2572|consen 228 IEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLA 307 (498)
T ss_pred HHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHH
Q 008571 323 KCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLRE 402 (561)
Q Consensus 323 k~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~ 402 (561)
++|+||||||||||||||+|+|+++|||||+|||+++|+++||+++|||+|.||+|++||+|+|+|+++.++.+|...|.
T Consensus 308 K~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~ 387 (498)
T KOG2572|consen 308 KAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRA 387 (498)
T ss_pred hCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCC
Q 008571 403 QVEERLDFYDKGVAP 417 (561)
Q Consensus 403 ~ie~rl~~l~~~~~p 417 (561)
++|.||+.++.+...
T Consensus 388 klE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 388 KLEKRLRSLEGRDLQ 402 (498)
T ss_pred HHHHHHhhhhccCcc
Confidence 999999999976543
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=3.4e-97 Score=787.22 Aligned_cols=371 Identities=34% Similarity=0.497 Sum_probs=341.1
Q ss_pred cEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHHhh
Q 008571 3 LYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELN 82 (561)
Q Consensus 3 ~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~n 82 (561)
+.+|+|||.||.+|.-.+ ++. + .-+-|.+.++|++++++|++|++++.|++||+.
T Consensus 1 ~~~~~~~~~g~~~~~~~~--~~~-----------~-----------~~~~~~~~~~a~~~~~~~~~g~~~~~l~~~l~~- 55 (414)
T PRK14552 1 KIYIAEHVIGAFAFDENG--KLI-----------D-----------KIFNPEDIPKIVEELLNNEKGEPTNALFELLEE- 55 (414)
T ss_pred CeeeeeccceeeEEccCc--chh-----------h-----------hhcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHh-
Confidence 468999999999998642 110 0 113455999999999999999999999999988
Q ss_pred CcccccccCCceEEEecChhhhhhhhhhcccccccChhHHHHHHHHhhhhhhhhccC----CcccHHHHHhhhhHHHHHH
Q 008571 83 LPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDL----KPGDLEKAQLGLGHSYSRA 158 (561)
Q Consensus 83 lpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~kll~~l----~~~d~~k~~lgLaHs~SR~ 158 (561)
+++ +.+.+|+|+|++|+..|++ +|+.|+.+ ++.+++||||.|+.+++.++ .+.|+.++++||+|+|||.
T Consensus 56 ~~~-----~~~~~l~v~d~~l~~~l~~-~~~~~~~~-~~~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~sr~ 128 (414)
T PRK14552 56 LKE-----LGPDEVVVENEEESRKLQE-LGYRVTVE-PPNKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELTRR 128 (414)
T ss_pred chh-----cCCceEEEecHHHHHHHHH-cCCeeEec-cHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHHHH
Confidence 452 2357899999999999998 68999854 66999999999999999753 4789999999999999999
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhh-
Q 008571 159 KVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDI- 237 (561)
Q Consensus 159 Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~i- 237 (561)
+|+|++++.|+||||||.++|+||++||.|||||||||+||||||++||+|+.+|+++|+.++++.++....+. ++
T Consensus 129 klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~---~i~ 205 (414)
T PRK14552 129 KLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTREKLK---KLG 205 (414)
T ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHH---hcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764443 34
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcC
Q 008571 238 LGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGS 317 (561)
Q Consensus 238 l~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGs 317 (561)
++ ++.++.|..||++|||.++++.|+.+|..+|++|++|+++|++|.+||+++|..||||||+|||+.+|||||+||||
T Consensus 206 l~-~eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGs 284 (414)
T PRK14552 206 LP-ENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAGG 284 (414)
T ss_pred CC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCC
Confidence 44 56789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHH
Q 008571 318 LTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFG 397 (561)
Q Consensus 318 L~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G 397 (561)
|.+||+||||||||||||||||+||+|+++||||||||||++|+++|+|+||||+|+||+|||||||||||++. .+|
T Consensus 285 L~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~~---~~G 361 (414)
T PRK14552 285 LEELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSGR---YIG 361 (414)
T ss_pred HHHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCCc---cch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999873 699
Q ss_pred HHHHHHHHHHHHhhh
Q 008571 398 EKLREQVEERLDFYD 412 (561)
Q Consensus 398 ~~lr~~ie~rl~~l~ 412 (561)
..||++|++||+++.
T Consensus 362 ~~l~~~l~~ri~~i~ 376 (414)
T PRK14552 362 DELKEELNKRIEEIK 376 (414)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 4
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-97 Score=773.23 Aligned_cols=356 Identities=43% Similarity=0.655 Sum_probs=336.8
Q ss_pred EeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHHhhCcccccccCCceEEEecChhhhhhhhhhcccccccChhHHHHH
Q 008571 46 QLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELL 125 (561)
Q Consensus 46 kL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~Ell 125 (561)
+|++|.||++..+++++-+.+.+|.++..+..||+.+++.. +.+.++.++|++|+. .....|..++....+.
T Consensus 2 ~l~~~~~f~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~----~~~~e~~~~~~~l~~----~~~~~~~~~~~~~~~r 73 (395)
T COG1498 2 SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEG----EKKLELVVCDTKLGN----ADSAFEIPSEVGEDLR 73 (395)
T ss_pred CccccccCCccHHHHhhhhhhhhcccchHHHHHHHhhcccc----hheeeccchhhhhhc----ccccccCCcHHHHHHH
Confidence 68899999999999999999999999999999999998742 346889999999998 1125566778888888
Q ss_pred HHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhh
Q 008571 126 RGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVK 205 (561)
Q Consensus 126 RgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~ 205 (561)
++++.++.++.... ++|+..++++++|+|||.+|++++++.|+||||+|++||+||++||+|+||||||||||||||++
T Consensus 74 ~~~~~~~~~l~~~~-~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~ 152 (395)
T COG1498 74 ENAEEALGELSSSD-EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSS 152 (395)
T ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh
Confidence 99999999998655 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008571 206 IVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLY 285 (561)
Q Consensus 206 iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~ 285 (561)
||+||.+||++|..+|++.+++++.+.+|..++++ .+..|..+|..|||+++++.|+.+|..||+.|.+|+++|++|.
T Consensus 153 lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~--~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~ 230 (395)
T COG1498 153 LVPDNEQYAKLVSALGNRENINKESLKDLGFALPD--IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLE 230 (395)
T ss_pred hcccHHHHHHHHHHHcchhccchhhHHHHhhhcch--HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877774 7889999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCcc
Q 008571 286 EYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASA 365 (561)
Q Consensus 286 ~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~ 365 (561)
+||+++|+.||||||+|||+.||||||+|||||.+||+|||||||+|||||||||||+++++|||||+|||||+|+++|+
T Consensus 231 ~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~ 310 (395)
T COG1498 231 EYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPP 310 (395)
T ss_pred HHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhcCC
Q 008571 366 RNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGV 415 (561)
Q Consensus 366 ~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~~~ 415 (561)
|+||||||+||+|||||||||+|++++++ ..||++|++||+++.++.
T Consensus 311 ~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~ 357 (395)
T COG1498 311 WQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKP 357 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999877 889999999999998763
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=4e-58 Score=477.27 Aligned_cols=250 Identities=24% Similarity=0.425 Sum_probs=234.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHH
Q 008571 165 NRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKA 244 (561)
Q Consensus 165 ~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~~~ 244 (561)
+..+.+|+.++.+.-+||++|+.+|.+||+||+.+||||+++|+++++|+++|+.|||..+....+++ +..+|+. ..+
T Consensus 91 dpeykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~-~~~~L~~-atI 168 (492)
T KOG2574|consen 91 DPEYKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLE-LQAILPS-ATI 168 (492)
T ss_pred CcceeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhh-hhccCcc-ceE
Confidence 35678999999999999999999999999999999999999999999999999999998776544433 3346663 445
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccC
Q 008571 245 KEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKC 324 (561)
Q Consensus 245 ~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~ 324 (561)
+.|...|++|.|..|+++.+++|.++|+.+.+|+..|..|.+|+++||..||||||+|||+.++|+||++||||.+|++|
T Consensus 169 MVvsvTasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~ 248 (492)
T KOG2574|consen 169 MVVSVTASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKM 248 (492)
T ss_pred EEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccC
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHH
Q 008571 325 PSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQV 404 (561)
Q Consensus 325 PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~i 404 (561)
||||||+||+.|.+..++++-...|+|||||+|++||+.||.+|.|++|+||+||+||||||++.++++|.+|..||++|
T Consensus 249 PaCNv~vlGk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~ev 328 (492)
T KOG2574|consen 249 PACNVQVLGKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEV 328 (492)
T ss_pred CcchhhhhhccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC
Q 008571 405 EERLDFYDKGVA 416 (561)
Q Consensus 405 e~rl~~l~~~~~ 416 (561)
+.++++|.++++
T Consensus 329 ekK~eKl~EpPp 340 (492)
T KOG2574|consen 329 EKKIEKLQEPPP 340 (492)
T ss_pred HHHHHhhcCCCC
Confidence 999999998654
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=1.8e-54 Score=404.85 Aligned_cols=148 Identities=51% Similarity=0.883 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhc
Q 008571 266 NVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTR 345 (561)
Q Consensus 266 ~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~ 345 (561)
||.++|+++++|.++|+.|.+||++||..||||||+|||+.||||||++||||.+||+|||||||+|||||++|++|+++
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCch-HHHHHHHHHHHHHHhhhc
Q 008571 346 GNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTI-FGEKLREQVEERLDFYDK 413 (561)
Q Consensus 346 ~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~-~G~~lr~~ie~rl~~l~~ 413 (561)
++||||||||||++|+++||++||||+|+||+||+||||||+|++.+++. ||.+||++|++||++|++
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e 149 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQE 149 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999995 999999999999999985
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.85 E-value=6.3e-22 Score=155.58 Aligned_cols=53 Identities=57% Similarity=0.998 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhc
Q 008571 170 MVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIED 222 (561)
Q Consensus 170 ~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~ 222 (561)
|||||++++++||++||.+|||+|||||||||||+++|+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999987
No 8
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=99.79 E-value=5.8e-20 Score=151.02 Aligned_cols=66 Identities=48% Similarity=0.838 Sum_probs=61.9
Q ss_pred cEEeecCcceeeeeeec-cccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhcc
Q 008571 3 LYLLYETASGYSLFLAH-GLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEG 69 (561)
Q Consensus 3 ~~vLfEtaaGYALFkv~-~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG 69 (561)
||||||||+|||||+|+ +.+.++.. ++||+.+.|+.+|+++|+|++|.||+|+++||+++++|+||
T Consensus 1 m~vLfEtaaGyaLF~v~~~~~~~~~~-~~v~~~~~~~~~f~k~vkL~aF~pF~s~~~ALe~~~aiseG 67 (67)
T PF08156_consen 1 MLVLFETAAGYALFKVKDEKDEIGSD-EEVQKSFSDPEKFSKIVKLKAFSPFKSAEEALENANAISEG 67 (67)
T ss_pred CEEEEcCCCeeeeeEEechhhhhccH-HHHHHHHcCHHHHhhhhhhhhccCCCCHHHHHHHHHHhhcC
Confidence 69999999999999998 66666555 99999999999999999999999999999999999999998
No 9
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=57.97 E-value=3.9 Score=44.88 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=10.3
Q ss_pred ccccccChhHHHHHH
Q 008571 112 KIPCQSNEFVLELLR 126 (561)
Q Consensus 112 gi~c~~~~~v~EllR 126 (561)
++.|++-+.+++-+|
T Consensus 62 n~n~iSeG~~~edLr 76 (498)
T KOG2573|consen 62 NANAISEGVVHEDLR 76 (498)
T ss_pred hccccccccccHHHH
Confidence 567777777777664
No 10
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.60 E-value=23 Score=37.91 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhc
Q 008571 245 KEIVEAGKASMGQDL---SAVDLVNVQMFAQRVMD-LSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAG 316 (561)
Q Consensus 245 ~~I~~aa~~SmG~~l---se~Dl~~I~~~a~~v~~-L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AG 316 (561)
..+...-.+|-|.+- +++|++.+..+-..++. ..-.-..+.+|+...-..+|| .||+||..||.-.|-.-+
T Consensus 230 l~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 230 LPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAIS 304 (331)
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhh
Confidence 344445556666654 59999999888777776 556666777889998899999 899999999988775443
No 11
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.31 E-value=10 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHhccccccchhHHHhChHHHHHHHH
Q 008571 282 KKLYEYLVTKMNDIAPNLASLIGEVVGARLIS 313 (561)
Q Consensus 282 ~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs 313 (561)
..+..++-.|.+..--+++.++++.+-|.|=.
T Consensus 203 ak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~ 234 (498)
T KOG2572|consen 203 AKLVKAMGVRCNAASLDFSEILPEEIEAELKE 234 (498)
T ss_pred HHHHHHHhHhhhhhcccHHhhchHHHHHHHHh
Confidence 44556666777777777888888887777653
No 12
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=47.01 E-value=2.5e+02 Score=29.09 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHH
Q 008571 267 VQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARL 311 (561)
Q Consensus 267 I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARL 311 (561)
+..+.+.+..-.+.++.+..||.+.+..+..+....||..|.-+|
T Consensus 278 l~~~~~~l~~~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l 322 (367)
T PF04286_consen 278 LEELIDKLKEDPELREKINRFIENLLERIVESNHIDIGEIVEEKL 322 (367)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444446788888888888888888887777777766554
No 13
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=36.32 E-value=4.9e+02 Score=26.65 Aligned_cols=102 Identities=22% Similarity=0.131 Sum_probs=65.6
Q ss_pred EecChhhhhhhhhhcccccccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHH
Q 008571 97 GVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIF 176 (561)
Q Consensus 97 ~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~ 176 (561)
.|+|.|-.-.=.=...|+-++.-+|.||| +-.|+-+.=.+|..+.+ +.|||-..|.+.-=-+.|+..=.-|.+|+-
T Consensus 6 TVSDtKr~F~~~~p~pI~siYrrvv~ELL--VElHLl~~n~~F~yDpl--fAlGlvt~fd~fm~GY~Pee~~~~IF~Alc 81 (214)
T TIGR03060 6 TVSDSKRAFHAAFPRVIPPLYRRVVDELL--VELHLLSHQSDFKYDPL--FALGLVTVFDRFMEGYRPEEHLDALFDALC 81 (214)
T ss_pred cHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777654332211236667888888988 77777766555555554 467888888887777777665556666654
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhccCcc
Q 008571 177 LL-DTLDKDINSFSMRVREWYSWHFPE 202 (561)
Q Consensus 177 ll-d~lDkeIn~~~~rlrEwYs~hFPE 202 (561)
-- ..=-+.++.-+..+.+|.+-+=++
T Consensus 82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~ 108 (214)
T TIGR03060 82 NSNGFDPEQLREDAKQLLEQAKGKGLD 108 (214)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 43 333356777788888888765443
No 14
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=26.52 E-value=28 Score=39.36 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=4.6
Q ss_pred hhhhhhccchhh
Q 008571 530 KKKKKAEDNEED 541 (561)
Q Consensus 530 ~~~~~~~~~~~~ 541 (561)
++|+..+++++.
T Consensus 156 ~~k~~qa~~ee~ 167 (807)
T KOG0066|consen 156 SKKKQQASEEEM 167 (807)
T ss_pred hhhhhhhhHHHh
Confidence 333333444433
No 15
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=26.38 E-value=36 Score=32.50 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhc
Q 008571 185 INSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIED 222 (561)
Q Consensus 185 In~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~ 222 (561)
+++.+.|++.||+-.-|+|+.| ++|.-|-+.+..|-+
T Consensus 46 ~~~~~~rl~~ly~kil~~~eqI-pkn~ayRk~Tesit~ 82 (145)
T KOG3365|consen 46 CENPHERLRDLYTKILDVLEQI-PKNAAYRKYTESITN 82 (145)
T ss_pred cCCHHHHHHHHHHHhHHHHHHc-chhhhhhHHHHHHHH
Confidence 4668999999999999999986 999999987666544
No 16
>PF07913 DUF1678: Protein of unknown function (DUF1678); InterPro: IPR012465 This family is composed of uncharacterised proteins expressed by Methanopyrus kandleri, a hyperthermophilic archaeon.
Probab=22.81 E-value=1.3e+02 Score=29.79 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=47.7
Q ss_pred HHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc
Q 008571 123 ELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVR----EWYSW 198 (561)
Q Consensus 123 EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlr----EwYs~ 198 (561)
-+||.+|.-+..++.+++...++++.--|+-.+ .+.|+......-=| =.+|+.|-..+..|..|.- .||+.
T Consensus 95 HlmRnlRsvLktlL~evs~lpyk~ar~VL~rgl---al~FdarP~~sp~I--rdlLe~lPdrlesflvrtLg~WPa~Ys~ 169 (201)
T PF07913_consen 95 HLMRNLRSVLKTLLTEVSDLPYKKARRVLARGL---ALAFDARPSESPRI--RDLLEELPDRLESFLVRTLGGWPAHYSS 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcc---cccccCCCCCCchH--HHHHHhCccHHHHHHHHHhcCCcHHHHH
Confidence 478999999999998888777777765555544 35565444333222 3467777777777877754 45654
Q ss_pred c
Q 008571 199 H 199 (561)
Q Consensus 199 h 199 (561)
|
T Consensus 170 ~ 170 (201)
T PF07913_consen 170 H 170 (201)
T ss_pred H
Confidence 3
No 17
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=22.24 E-value=50 Score=27.77 Aligned_cols=17 Identities=41% Similarity=0.854 Sum_probs=14.5
Q ss_pred HHHHHHHhccCcchhhh
Q 008571 190 MRVREWYSWHFPELVKI 206 (561)
Q Consensus 190 ~rlrEwYs~hFPEL~~i 206 (561)
..||+.|+..||||..-
T Consensus 26 e~V~dfYs~~YPeLttA 42 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNA 42 (66)
T ss_pred HHHHHHHhccCchheee
Confidence 56899999999999753
No 18
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.35 E-value=1.5e+03 Score=28.45 Aligned_cols=164 Identities=17% Similarity=0.266 Sum_probs=87.1
Q ss_pred EEeecCcceeeeeee-ccccccccchHHHHHHhhcHhhhccceEeecccc----------CCCHHHHHHHHhhhhccCCC
Q 008571 4 YLLYETASGYSLFLA-HGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHP----------FESALDALNQCNSVSEGLMT 72 (561)
Q Consensus 4 ~vLfEtaaGYALFkv-~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~p----------F~s~~~Ale~~~~i~eG~~~ 72 (561)
+.-+|..+|-+||.+ .+.|++.-. |-..|.... ++ =+.|.| |++..+|+--+..| ...
T Consensus 539 ~tavEvtaGNsLF~iVVdndevATk---Il~~~n~m~-~G----rVTF~PLNrl~~r~v~yp~~sdaiPli~kl---~y~ 607 (1200)
T KOG0964|consen 539 KTAVEVTAGNSLFNIVVDNDEVATK---ILRKLNKMK-GG----RVTFMPLNRLKARDVEYPKDSDAIPLISKL---RYE 607 (1200)
T ss_pred HhHHhhhcccceEEEEecccHHHHH---HHHHHHhcc-CC----eeEEeecccCchhhccCCCCCCccchHHHh---Ccc
Confidence 345788899999997 355555422 112222211 11 133444 44444554333333 334
Q ss_pred HHHHHHHHhhCcccccccCCceEEEecChhhhhhhhhhcccccccC--hhH---HHHHHHH----hhhhhhhhccCC--c
Q 008571 73 NELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSN--EFV---LELLRGV----RLHFDRFIKDLK--P 141 (561)
Q Consensus 73 ~~Lk~FL~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~--~~v---~EllRgI----R~~~~kll~~l~--~ 141 (561)
+....-|..-+. .++.|.|-.-+..+....++.|++= +.| +-+.-|. |+.++ +++++. .
T Consensus 608 p~fdka~k~Vfg---------ktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe-~~k~~~~~~ 677 (1200)
T KOG0964|consen 608 PQFDKALKHVFG---------KTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLE-LLKNVNESR 677 (1200)
T ss_pred hhhHHHHHHHhC---------ceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHH-HHhhhHHHH
Confidence 555555554443 3788888888888888888888522 111 0011111 11111 112221 1
Q ss_pred ccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008571 142 GDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVRE 194 (561)
Q Consensus 142 ~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrE 194 (561)
.++...+-.|.. +.-..+..|+-|-|++.-+-+++.+++.|+.-.+.
T Consensus 678 ~~~~~l~~~L~~------~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~ 724 (1200)
T KOG0964|consen 678 SELKELQESLDE------VRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEK 724 (1200)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222323322222 33455678899999999999999999988766554
No 19
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=20.11 E-value=3.1e+02 Score=24.17 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=20.2
Q ss_pred cccccChhHHHHHHHHhhhhhhhhccCCc
Q 008571 113 IPCQSNEFVLELLRGVRLHFDRFIKDLKP 141 (561)
Q Consensus 113 i~c~~~~~v~EllRgIR~~~~kll~~l~~ 141 (561)
..| +++.|.|++-.||.+++.|+. |.+
T Consensus 12 ~rC-SGnSvsEVL~~~k~N~D~~~a-L~~ 38 (97)
T PF11043_consen 12 RRC-SGNSVSEVLDNIKNNYDAFMA-LPP 38 (97)
T ss_pred ccc-cCccHHHHHHHHHHHHHHHHc-CCh
Confidence 345 345688999999999999984 543
Done!