Query 008571
Match_columns 561
No_of_seqs 215 out of 695
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pla_A NOP5, PRE mRNA splicing 100.0 6E-110 2E-114 871.5 29.4 372 1-416 1-379 (388)
2 2nnw_A NOP5/NOP56 related prot 100.0 8E-103 3E-107 818.0 28.7 359 4-411 13-375 (376)
3 3icx_A PRE mRNA splicing prote 100.0 1.2E-87 4E-92 672.1 19.7 245 166-416 2-246 (255)
4 2ozb_B U4/U6 small nuclear rib 100.0 3E-85 1E-89 658.0 21.9 248 164-413 13-260 (260)
5 1nt2_B Conserved hypothetical 100.0 4.8E-70 1.6E-74 544.8 11.2 206 141-413 47-257 (258)
6 3id6_A NOP5, PRE mRNA splicing 100.0 5.1E-67 1.8E-71 527.4 22.7 258 1-297 1-263 (268)
7 3gqu_A NOP5P protein; RNA bind 100.0 9.6E-51 3.3E-55 381.6 3.7 135 276-413 14-148 (169)
8 2a1j_A DNA repair endonuclease 38.7 16 0.00054 28.5 2.3 41 303-343 12-56 (63)
9 2a1j_B DNA excision repair pro 31.7 37 0.0013 27.8 3.6 35 303-337 40-77 (91)
10 4fbj_A CIF, hypothetical prote 31.7 13 0.00044 36.6 0.8 65 312-379 99-174 (261)
11 3swh_A MUNC13-1, protein UNC-1 29.8 2.1E+02 0.0071 29.4 9.6 78 116-218 50-132 (341)
12 1x2i_A HEF helicase/nuclease; 27.7 32 0.0011 26.5 2.4 35 303-337 22-59 (75)
13 1z00_A DNA excision repair pro 27.0 35 0.0012 27.8 2.5 42 303-344 27-73 (89)
14 1kea_A Possible G-T mismatches 24.1 2.5E+02 0.0084 26.7 8.4 41 179-220 3-43 (221)
15 1kft_A UVRC, excinuclease ABC 22.0 35 0.0012 27.1 1.6 28 303-330 32-59 (78)
16 3efy_A CIF (cell cycle inhibit 21.6 45 0.0016 31.4 2.5 25 344-368 74-98 (195)
No 1
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=6.5e-110 Score=871.48 Aligned_cols=372 Identities=33% Similarity=0.489 Sum_probs=345.1
Q ss_pred CccEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCC-CHHHHHHHHhhhhccCCCHHHHHHH
Q 008571 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFE-SALDALNQCNSVSEGLMTNELRNFL 79 (561)
Q Consensus 1 m~~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~-s~~~Ale~~~~i~eG~~~~~Lk~FL 79 (561)
|+-.+|+|++.||.+|.=. .+|++|.||+ |+++|++++++|++|++++.|++||
T Consensus 1 ~~k~yl~~~~~G~~a~de~-------------------------~~l~~~~~f~~s~~~ale~~~~i~eg~~~~~L~~fL 55 (388)
T 3pla_A 1 MVKIYLIEHVIGAVAYDEN-------------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELL 55 (388)
T ss_dssp --CEEEEEETTEEEEECSS-------------------------SCEEEEEECCSCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CceEEEEecceeeEEECCC-------------------------CCeEeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5558899999999999421 2788999997 9999999999999999999999999
Q ss_pred HhhCcccccccCCceEEEecChhhhhhhhhhcccccc--cChhHHHHHHHHhhhhhhhhc--cCC--cccHHHHHhhhhH
Q 008571 80 ELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQ--SNEFVLELLRGVRLHFDRFIK--DLK--PGDLEKAQLGLGH 153 (561)
Q Consensus 80 ~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~--~~~~v~EllRgIR~~~~kll~--~l~--~~d~~k~~lgLaH 153 (561)
+.|+| .+|+|+|++||..|++. |++|. +++ .++|+||.|+.+++. ++. ++|+.++++||+|
T Consensus 56 ~~~~~---------~~l~V~d~~L~~~i~~~-~~~~~~~~~~---~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~ 122 (388)
T 3pla_A 56 KKVNP---------QEVVVENEAEVPKLQAL-GYRVSYEPYS---KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSL 122 (388)
T ss_dssp HHSCC---------SEEEESCTTTHHHHHHT-TCEEEECTTC---HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred HHhCC---------CeEEEECHHHHHHHHHc-CCCeeecCch---HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHH
Confidence 99886 36999999999999986 89886 444 567888999999997 455 7899999999999
Q ss_pred HHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhh
Q 008571 154 SYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPA 233 (561)
Q Consensus 154 s~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~ 233 (561)
+|||+||+|++++.|+||||||+++|+||++||.|+||||||||||||||++||+||.+|+++|+.||||.+++.+++.+
T Consensus 123 ~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~ 202 (388)
T 3pla_A 123 EYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE 202 (388)
T ss_dssp HHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHT
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred hhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHH
Q 008571 234 LTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLIS 313 (561)
Q Consensus 234 l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs 313 (561)
+ ..+++.++.|..+|++|||++||+.|+.+|..+|++|++|.++|++|.+||++||..||||||+|||+.||||||+
T Consensus 203 l---~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs 279 (388)
T 3pla_A 203 L---GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLS 279 (388)
T ss_dssp T---TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHH
Confidence 4 2346678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCC
Q 008571 314 HAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT 393 (561)
Q Consensus 314 ~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~ 393 (561)
|||||.+||||||||||+|||||||||||+|+++|||||+||||++|+++|||+||||+|+||+|||||||||+|++.
T Consensus 280 ~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~aLAARiD~~~g~-- 357 (388)
T 3pla_A 280 IAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR-- 357 (388)
T ss_dssp HHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHHHHHhhcccCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred chHHHHHHHHHHHHHHhhhcCCC
Q 008571 394 TIFGEKLREQVEERLDFYDKGVA 416 (561)
Q Consensus 394 ~~~G~~lr~~ie~rl~~l~~~~~ 416 (561)
.||.+||++|++||++|+++..
T Consensus 358 -~~G~~lreeie~ri~kl~e~~~ 379 (388)
T 3pla_A 358 -FIGDQLNEQLKKRIDEIKEKFA 379 (388)
T ss_dssp -CCHHHHHHHHHHHHHHHHCC--
T ss_pred -ccCHHHHHHHHHHHHHHhCccc
Confidence 4799999999999999998643
No 2
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=8.1e-103 Score=817.97 Aligned_cols=359 Identities=33% Similarity=0.517 Sum_probs=319.5
Q ss_pred EEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCCCHHHHHHHHhhhhccCCCHHHHHHHHhhC
Q 008571 4 YLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNL 83 (561)
Q Consensus 4 ~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~s~~~Ale~~~~i~eG~~~~~Lk~FL~~nl 83 (561)
.+|+||+.|| |.+.+.. ++++|.||+++.+|++++ +++|++++.|++||+. +
T Consensus 13 ~~l~~~~~G~--~~~~e~g-----------------------~~~~~~~f~~~~~al~~~--~~eg~~~~~l~~~l~~-~ 64 (376)
T 2nnw_A 13 AFISENVRGI--YAFDENG-----------------------NLIEKRYFTDKPEKVLDQ--LLKGEITKDLEELLNS-L 64 (376)
T ss_dssp -CEEECSSEE--EEBCSSS-----------------------CBCCCEECSSCHHHHHHH--HTTTCCCHHHHHHHHH-H
T ss_pred HHHHhcccee--EEEcCCC-----------------------ceEeeeeCCChHHHHHHH--HHcCCCCHHHHHHHHh-c
Confidence 6799999999 5443221 356899999999999976 5899999999999987 4
Q ss_pred cccccccCCceEEEecChhhhhhhhhhccccc--ccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhh
Q 008571 84 PKVKEGKKAKFSLGVSEPKIGSHIFEETKIPC--QSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVK 161 (561)
Q Consensus 84 pk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c--~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk 161 (561)
++ ++.++|+|+|++||..|++ +|++| +++..|++++ |.|+++|+ +.|+.++++||+|+|||+||+
T Consensus 65 ~~-----~~~~~l~v~d~~l~~~i~~-~~~~~~~~~~~~~~~~~---R~~~~~l~----~~d~~~~~~~l~h~~sr~Kvk 131 (376)
T 2nnw_A 65 KE-----KGYDEFVFEHPELSRRAKE-LGFSATTEFPNIAGERL---RSNPEEFL----GENWFEEYYKVGVALTRMRIQ 131 (376)
T ss_dssp HT-----TTCCCEEESSHHHHHHHHT-TTCCEEECTTCHHHHHH---HHCTHHHH----CSSHHHHHHHHHHHHHHHHSC
T ss_pred cc-----ccCeEEEEcCHHHHHHHHh-cCCceeeecCcHHHHHH---HHHHHHhh----hhHHHHHHHHHHHHHHHhhhc
Confidence 42 2357899999999999999 88888 4788887776 99999999 689999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhh-cCC
Q 008571 162 FNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDI-LGD 240 (561)
Q Consensus 162 ~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~i-l~~ 240 (561)
|++++.|+||||+|+++|+||++||.|+||||||||||||||++||+||.+|+++|+.||++.+++.++ |.++ ++
T Consensus 132 ~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~k~V~~ig~~~~l~~~~---L~~i~l~- 207 (376)
T 2nnw_A 132 EQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEV---LRELGLS- 207 (376)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHTCSGGGCCSHH---HHHTTCC-
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHHHHHHHhCCccccCHhh---HHHcCCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999997654 4445 65
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcch
Q 008571 241 EDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTN 320 (561)
Q Consensus 241 ~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~ 320 (561)
++.++.|..+|++|||++||+.|+.+|..+|+++++|.++|++|.+||++||..||||||+|||+.+|||||+|||||.+
T Consensus 208 ~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL~~ 287 (376)
T 2nnw_A 208 EEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRE 287 (376)
T ss_dssp HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhChHHHHHHHHHhCCHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchH-HHH
Q 008571 321 LAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIF-GEK 399 (561)
Q Consensus 321 LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~-G~~ 399 (561)
||||||||||||||||||||||+|+++|||||+||||++||++|||+||||+|+||+|||||||||||++ .+ |.+
T Consensus 288 LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAaK~aLAARiD~~~g----~~~G~~ 363 (376)
T 2nnw_A 288 LAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG----EYIAEE 363 (376)
T ss_dssp HHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHH
T ss_pred HhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcCC----cccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999964 45 999
Q ss_pred HHHHHHHHHHhh
Q 008571 400 LREQVEERLDFY 411 (561)
Q Consensus 400 lr~~ie~rl~~l 411 (561)
+|++|++||++|
T Consensus 364 lre~ie~rl~~i 375 (376)
T 2nnw_A 364 LKKELEARIREI 375 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 3
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-87 Score=672.12 Aligned_cols=245 Identities=44% Similarity=0.707 Sum_probs=214.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChHHHH
Q 008571 166 RVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDKAK 245 (561)
Q Consensus 166 k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~~~~ 245 (561)
+.|+||||||+++|+||++||.|+||||||||||||||++||+||.+|+++|+.|||+.+++.+++.+ +..+++.++
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~~~~l~~---l~l~~~~~~ 78 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKE---LGFNEQRIN 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCCHHHHHT---TTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCChhhHHH---ccCCHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999998766555 423466789
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCC
Q 008571 246 EIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCP 325 (561)
Q Consensus 246 ~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~P 325 (561)
.|..+|++|||++||+.|+.+|..+|++|++|.++|++|.+||++||..||||||+|||+.||||||+|||||.+|||||
T Consensus 79 ~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~P 158 (255)
T 3icx_A 79 RILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMP 158 (255)
T ss_dssp HHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHH
Q 008571 326 SSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVE 405 (561)
Q Consensus 326 AStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~ie 405 (561)
|||||+|||||||||||+|+++||||||||||++|+++|||+||||+|+||+|||||||||+|++. .||.+||++|+
T Consensus 159 AstIqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g~---~~G~~lre~ie 235 (255)
T 3icx_A 159 ASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLK 235 (255)
T ss_dssp HHHHTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred hHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 47999999999
Q ss_pred HHHHhhhcCCC
Q 008571 406 ERLDFYDKGVA 416 (561)
Q Consensus 406 ~rl~~l~~~~~ 416 (561)
+||++|+++..
T Consensus 236 ~ri~kl~e~~~ 246 (255)
T 3icx_A 236 KRIDEIKEKFA 246 (255)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHhCccc
Confidence 99999998643
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=3e-85 Score=658.01 Aligned_cols=248 Identities=27% Similarity=0.482 Sum_probs=227.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhhhhcCChHH
Q 008571 164 VNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALTDILGDEDK 243 (561)
Q Consensus 164 ~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~~il~~~~~ 243 (561)
.+.++.||||+|+++|+||+|||+||||||||||||||||++||+||.+|+++|+.|||+.+++.. ..+|.++++ ++.
T Consensus 13 ~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~-~~~L~~iL~-~~~ 90 (260)
T 2ozb_B 13 AAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN-NENLQQILT-NAT 90 (260)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTT-CTTGGGTSC-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccc-hHHHHHHcC-HHH
Confidence 456899999999999999999999999999999999999999999999999999999999887642 245667787 456
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhcc
Q 008571 244 AKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAK 323 (561)
Q Consensus 244 ~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk 323 (561)
++.|..+|++|||++||+.|+.+|..+|+++++|.++|++|.+||++||..||||||+|||+.||||||+|||||.+|||
T Consensus 91 ~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL~~Lak 170 (260)
T 2ozb_B 91 IMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSK 170 (260)
T ss_dssp HHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHhhhhhhhhhHHhhhcCCCCceeEEeeccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHH
Q 008571 324 CPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQ 403 (561)
Q Consensus 324 ~PAStIQiLGAEKALFraLkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~ 403 (561)
|||||||+||||||||+||+|+++|||||+||||++|+++||++||||+|+||+|||||||||+|++.+++.||.++|++
T Consensus 171 ~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~~ 250 (260)
T 2ozb_B 171 MPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 250 (260)
T ss_dssp SCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHH
T ss_pred CCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 008571 404 VEERLDFYDK 413 (561)
Q Consensus 404 ie~rl~~l~~ 413 (561)
|++||++|++
T Consensus 251 ie~rl~~~~e 260 (260)
T 2ozb_B 251 IERKFDKWQE 260 (260)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcC
Confidence 9999999974
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=4.8e-70 Score=544.77 Aligned_cols=206 Identities=30% Similarity=0.516 Sum_probs=181.5
Q ss_pred cccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHh
Q 008571 141 PGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLI 220 (561)
Q Consensus 141 ~~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I 220 (561)
+.|+....++++|+|||+||+|++++.|+||||+|+++|+||++||.|+||||||||| |
T Consensus 47 ~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~--~------------------- 105 (258)
T 1nt2_B 47 GKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV--K------------------- 105 (258)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT--C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C-------------------
Confidence 5789999999999999999999999999999999999999999999999999999998 0
Q ss_pred hcCCCCCCCChhhhhhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Q 008571 221 EDKSKLTDDMVPALTDILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLA 300 (561)
Q Consensus 221 ~~r~~l~~~~l~~l~~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAPNLt 300 (561)
+| +||+ .+|+++++|.++|+.|.+||++||..||||||
T Consensus 106 --------------------------------~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLs 143 (258)
T 1nt2_B 106 --------------------------------ES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAPNMT 143 (258)
T ss_dssp --------------------------------CC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred --------------------------------CC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 11 3443 89999999999999999999999999999999
Q ss_pred HHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHh---hhc--CCCCceeEEeeccccccCccccchhHHHHH
Q 008571 301 SLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRAL---KTR--GNTPKYGLIFHSSFIGRASARNKGRMARYL 375 (561)
Q Consensus 301 aLvG~~vaARLIs~AGsL~~LAk~PAStIQiLGAEKALFraL---kt~--~~tPK~GlIy~s~lV~~ap~~~rgKiaR~L 375 (561)
+|||+.||||||+|||||.+||+|||||||+|||||+||+|| +|+ ++||||||||||++|+++||++||||+|+|
T Consensus 144 aLvG~~vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~aR~L 223 (258)
T 1nt2_B 144 ELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFL 223 (258)
T ss_dssp HHHCHHHHHHHHHHHCSHHHHHTCCHHHHTTSSCC--------------------CCGGGGSHHHHTSCSSSSHHHHHHH
T ss_pred HHhCcHHHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 999999999999999999999999999999
Q ss_pred HhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhc
Q 008571 376 ANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDK 413 (561)
Q Consensus 376 A~K~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~ 413 (561)
|+|||||||||+|++ .||.++|++|++||++|.+
T Consensus 224 AaK~aLAARiD~~~g----~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 224 AAKLAIAAKIDYFRG----EIDESLYESIRRRYEELRR 257 (258)
T ss_dssp HHHHHHHHHHHHHTC----SCCTHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhCC----cccHHHHHHHHHHHHHHhh
Confidence 999999999999964 5899999999999999975
No 6
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-67 Score=527.38 Aligned_cols=258 Identities=26% Similarity=0.346 Sum_probs=233.0
Q ss_pred CccEEeecCcceeeeeeeccccccccchHHHHHHhhcHhhhccceEeeccccCC-CHHHHHHHHhhhhccCCCHHHHHHH
Q 008571 1 MALYLLYETASGYSLFLAHGLDQIGQNTEAVRSSISDMNRFGKVVQLTAFHPFE-SALDALNQCNSVSEGLMTNELRNFL 79 (561)
Q Consensus 1 m~~~vLfEtaaGYALFkv~~~d~i~~~~~~v~~~~~~~~~f~k~VkL~aF~pF~-s~~~Ale~~~~i~eG~~~~~Lk~FL 79 (561)
|+-.+|+|++.||-.|.=. -+|++|.||+ |+++||+++++|++|++++.|++||
T Consensus 1 ~mk~yl~~~~~G~~a~de~-------------------------g~lv~f~pF~~s~~~ale~~~~i~eG~~~~~L~~fL 55 (268)
T 3id6_A 1 MVKIYLIEHVIGAVAYDEN-------------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELL 55 (268)
T ss_dssp -CEEEEEEETTEEEEECTT-------------------------SCEEEEEECCSCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CceEEEEecceeeEEECCC-------------------------CCeeeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5558899999999999421 2899999999 9999999999999999999999999
Q ss_pred HhhCcccccccCCceEEEecChhhhhhhhhhcccccccChhHHHHHHHHhhhhhhhhc--cCC--cccHHHHHhhhhHHH
Q 008571 80 ELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIK--DLK--PGDLEKAQLGLGHSY 155 (561)
Q Consensus 80 ~~nlpk~~~~k~~~~~L~V~D~kL~~~I~e~lgi~c~~~~~v~EllRgIR~~~~kll~--~l~--~~d~~k~~lgLaHs~ 155 (561)
+.|+| .+|+|+|++||.+|++. |++|.+ +.+.+++||||.|+.+++. ++. ++|+.++++||||+|
T Consensus 56 ~~~~~---------~~l~V~D~kL~~~i~~~-gi~~~~-~~~~~~~~~iR~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~ 124 (268)
T 3id6_A 56 KKVNP---------QEVVVENEAEVPKLQAL-GYRVSY-EPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEY 124 (268)
T ss_dssp HHSCC---------SEEEESCTTHHHHHTTT-TCEEEE-CTTCHHHHHHHHTTTHHHHHTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHhCC---------CeEEEeChHHHHHHHhc-CCCccc-CCcHHHHHHHHHhHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 99987 36999999999999997 899984 2345789999999999996 456 789999999999999
Q ss_pred HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHhhcCCCCCCCChhhhh
Q 008571 156 SRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLIEDKSKLTDDMVPALT 235 (561)
Q Consensus 156 SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I~~r~~l~~~~l~~l~ 235 (561)
||+||+|++++.|+||||||++||+||++||+|+||||||||||||||++||+||.+||++|+.||+|.+++..++++|
T Consensus 125 sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i- 203 (268)
T 3id6_A 125 TRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKEL- 203 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGG-
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987665554
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 008571 236 DILGDEDKAKEIVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAP 297 (561)
Q Consensus 236 ~il~~~~~~~~I~~aa~~SmG~~lse~Dl~~I~~~a~~v~~L~e~R~~L~~YL~~rM~~iAP 297 (561)
.++ ++.++.|..||++|||++||+.||.+|..||++|++|+++|++|.+||++||..+|-
T Consensus 204 -~l~-~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 204 -GFN-EQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp -TCC-HHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -CCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 144 677999999999999999999999999999999999999999999999999999885
No 7
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=9.6e-51 Score=381.64 Aligned_cols=135 Identities=43% Similarity=0.674 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhccccccchhHHHhChHHHHHHHHHhcCcchhccCCchHHHhhhhhhhhhHHhhhcCCCCceeEEe
Q 008571 276 DLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIF 355 (561)
Q Consensus 276 ~L~e~R~~L~~YL~~rM~~iAPNLtaLvG~~vaARLIs~AGsL~~LAk~PAStIQiLGAEKALFraLkt~~~tPK~GlIy 355 (561)
.+...|..|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||+|||||+||+||+++++||||||||
T Consensus 14 ~~~~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy 93 (169)
T 3gqu_A 14 KMVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIY 93 (169)
T ss_dssp ------CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCccccchhHHHHHHhHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHhhhc
Q 008571 356 HSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDK 413 (561)
Q Consensus 356 ~s~lV~~ap~~~rgKiaR~LA~K~aLAARiD~f~~~~~~~~G~~lr~~ie~rl~~l~~ 413 (561)
||++|+++|+++||||+|+||+||+||||||+|+++ .||..+|++|++||++|.+
T Consensus 94 ~s~lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e 148 (169)
T 3gqu_A 94 QYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKE 148 (169)
T ss_dssp GSHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCC
T ss_pred eCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864 5799999999999999985
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=38.71 E-value=16 Score=28.53 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=33.6
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHH-Hhhhhhh-h--hhHHhh
Q 008571 303 IGEVVGARLISHAGSLTNLAKCPSSTL-QILGAEK-A--LFRALK 343 (561)
Q Consensus 303 vG~~vaARLIs~AGsL~~LAk~PAStI-QiLGAEK-A--LFraLk 343 (561)
||+.-.-+|+.|.||+.++..++--.+ +++|.+. | ++.+|.
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 689999999999999999999998887 5677655 3 566664
No 9
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=31.70 E-value=37 Score=27.84 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=28.2
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh
Q 008571 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA 337 (561)
Q Consensus 303 vG~~vaARLIs~AGsL~~LAk~PAStIQi---LGAEKA 337 (561)
||+..+.+|+.+.|++.+|...+...++- +|..++
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a 77 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKA 77 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHH
Confidence 68999999999999999998888777653 465554
No 10
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=31.65 E-value=13 Score=36.61 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHhcCc------chhccCCchHHHhhhhhh-hhhHH----hhhcCCCCceeEEeeccccccCccccchhHHHHHHhHH
Q 008571 312 ISHAGSL------TNLAKCPSSTLQILGAEK-ALFRA----LKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKC 379 (561)
Q Consensus 312 Is~AGsL------~~LAk~PAStIQiLGAEK-ALFra----Lkt~~~tPK~GlIy~s~lV~~ap~~~rgKiaR~LA~K~ 379 (561)
++.+|+| +.|+.||||.=-|+=-.- +|-++ +-...+ |+.||||||++=+++-|.+| ++--+..|-
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~-~r~ayiyQSDLG~Galp~lr--~eDWm~~rg 174 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQ-ETVGYIYQSDLGQGALPPLK--IADWLNSRG 174 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSS-CCEEEEECCBCSCSSSCCBC--HHHHHHHGG
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCC-CcceEEEecccCCCCCccee--HHHHHhhcC
Confidence 4567787 678899998744432211 12111 222334 89999999999999988764 444444443
No 11
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=29.80 E-value=2.1e+02 Score=29.42 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=44.6
Q ss_pred ccChhHHHHHHHHhhhhhhhhccCCcccHHHHHhhhhHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008571 116 QSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREW 195 (561)
Q Consensus 116 ~~~~~v~EllRgIR~~~~kll~~l~~~d~~k~~lgLaHs~SR~Kvk~s~~k~D~~IIqai~lld~lDkeIn~~~~rlrEw 195 (561)
.++..|.++++.+.+ +-.++..|...|... .++.++ .+++.+-+-+..|+..|+.-
T Consensus 50 ~hSsSvvDif~~~~Q-~~~~~~~L~WpD~~~----~~~f~t-------------------~l~~~i~~~~~~Y~~~l~~~ 105 (341)
T 3swh_A 50 LFSCSVVDVFSQLNQ-SFEIIKKLECPDPQI----VGHYMR-------------------RFAKTISNVLLQYADIVSKD 105 (341)
T ss_dssp CSCTHHHHHHHHHHH-HHHHHHHSCCSCHHH----HHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH-HHHHHHHCCCCCHHH----HHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 467888999999965 444666677666432 222222 24455555555566555543
Q ss_pred HhccCcc-----hhhhccCchhHHHHHH
Q 008571 196 YSWHFPE-----LVKIVNDNYLYARVVK 218 (561)
Q Consensus 196 Ys~hFPE-----L~~iv~d~~~Y~kvV~ 218 (561)
+.-+... ++ ++-||++|+|+..
T Consensus 106 ~~~~~~~e~~~~~C-v~lNNie~lR~~L 132 (341)
T 3swh_A 106 FASYCSKEKEKVPC-ILMNNTQQLRVQL 132 (341)
T ss_dssp HHHHCCTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHhhhhhhcccchh-hhcccHHHHHHHH
Confidence 3222211 22 4558888888754
No 12
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=27.72 E-value=32 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=26.7
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh
Q 008571 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA 337 (561)
Q Consensus 303 vG~~vaARLIs~AGsL~~LAk~PAStIQi---LGAEKA 337 (561)
||+.++.+|+.+.|++.+|...+...++- +|..++
T Consensus 22 iG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a 59 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA 59 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHH
Confidence 68889999999999999988777666543 454443
No 13
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=26.96 E-value=35 Score=27.79 Aligned_cols=42 Identities=31% Similarity=0.514 Sum_probs=31.7
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHHh---hhhhhh--hhHHhhh
Q 008571 303 IGEVVGARLISHAGSLTNLAKCPSSTLQI---LGAEKA--LFRALKT 344 (561)
Q Consensus 303 vG~~vaARLIs~AGsL~~LAk~PAStIQi---LGAEKA--LFraLkt 344 (561)
||+..+-+|+.+.|++.+|...+...++- +|..++ +...+..
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999888877753 566555 3344443
No 14
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=24.10 E-value=2.5e+02 Score=26.67 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhhccCchhHHHHHHHh
Q 008571 179 DTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARVVKLI 220 (561)
Q Consensus 179 d~lDkeIn~~~~rlrEwYs~hFPEL~~iv~d~~~Y~kvV~~I 220 (561)
|-++..+..|..+|.+||..+...+.- ......|--+|..|
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~pw-~~~~~pfe~lv~~I 43 (221)
T 1kea_A 3 DATNKKRKVFVSTILTFWNTDRRDFPW-RHTRDPYVILITEI 43 (221)
T ss_dssp CTHHHHHHHHHHHHHHHHHHSCCCCGG-GGCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhCcC-CCCCCHHHHHHHHH
Confidence 345677888999999999986433321 12334566666665
No 15
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=22.01 E-value=35 Score=27.14 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.3
Q ss_pred hChHHHHHHHHHhcCcchhccCCchHHH
Q 008571 303 IGEVVGARLISHAGSLTNLAKCPSSTLQ 330 (561)
Q Consensus 303 vG~~vaARLIs~AGsL~~LAk~PAStIQ 330 (561)
||+..+-+|+.+.|++.+|...+...++
T Consensus 32 IG~~~A~~Ll~~fgsl~~l~~a~~eeL~ 59 (78)
T 1kft_A 32 VGPKRRQMLLKYMGGLQGLRNASVEEIA 59 (78)
T ss_dssp CSSSHHHHHHHHHSCHHHHHHCCHHHHT
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHH
Confidence 7899999999999999998888776664
No 16
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=21.63 E-value=45 Score=31.42 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=21.1
Q ss_pred hcCCCCceeEEeeccccccCccccc
Q 008571 344 TRGNTPKYGLIFHSSFIGRASARNK 368 (561)
Q Consensus 344 t~~~tPK~GlIy~s~lV~~ap~~~r 368 (561)
...+.|+.||||||++=+.+-|.+|
T Consensus 74 ~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 74 KGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp SCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred CCCCCCcceEEEecccCCcccccee
Confidence 4468899999999999999888664
Done!