Query 008572
Match_columns 561
No_of_seqs 176 out of 436
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 13:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 4.4E-58 9.5E-63 467.3 24.4 164 9-172 3-166 (336)
2 KOG2057 Predicted equilibrativ 100.0 1.4E-49 3.1E-54 403.8 24.3 188 8-206 4-196 (499)
3 cd03571 ENTH_epsin ENTH domain 100.0 5E-48 1.1E-52 346.6 13.0 123 27-149 1-123 (123)
4 PF01417 ENTH: ENTH domain; I 100.0 5.3E-42 1.2E-46 302.5 14.3 124 25-148 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 1.8E-34 4E-39 254.9 13.0 126 26-152 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 1.1E-24 2.5E-29 196.3 10.4 113 30-145 4-120 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 1.1E-22 2.4E-27 176.3 11.0 114 28-144 1-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 3.6E-19 7.7E-24 156.5 10.8 112 28-142 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.8 1.2E-08 2.6E-13 100.3 8.9 113 26-139 2-117 (280)
10 KOG0251 Clathrin assembly prot 98.6 4.3E-07 9.3E-12 98.7 11.9 117 24-142 20-138 (491)
11 PF00790 VHS: VHS domain; Int 98.0 1.3E-05 2.9E-10 72.9 7.5 109 25-142 3-116 (140)
12 smart00288 VHS Domain present 97.7 0.00028 6.1E-09 64.2 9.5 107 29-142 2-109 (133)
13 cd03568 VHS_STAM VHS domain fa 97.7 0.00029 6.4E-09 65.5 9.7 108 28-143 1-109 (144)
14 cd03565 VHS_Tom1 VHS domain fa 97.6 0.00064 1.4E-08 62.9 10.4 111 28-143 2-114 (141)
15 cd03569 VHS_Hrs_Vps27p VHS dom 97.5 0.0012 2.5E-08 61.3 11.7 111 25-143 2-113 (142)
16 cd03561 VHS VHS domain family; 97.5 0.00093 2E-08 60.6 10.4 109 29-143 2-111 (133)
17 cd03567 VHS_GGA VHS domain fam 97.4 0.0022 4.7E-08 59.7 11.4 110 28-143 2-115 (139)
18 KOG1087 Cytosolic sorting prot 96.8 0.0068 1.5E-07 66.4 10.6 107 28-141 2-109 (470)
19 KOG2199 Signal transducing ada 94.4 0.4 8.6E-06 52.3 11.4 126 25-160 6-138 (462)
20 PLN03131 hypothetical protein; 88.3 8.3 0.00018 44.6 13.5 51 358-411 359-410 (705)
21 KOG0980 Actin-binding protein 87.5 0.95 2.1E-05 53.3 5.8 106 30-140 9-115 (980)
22 KOG1086 Cytosolic sorting prot 80.7 5.7 0.00012 44.4 7.8 81 26-108 7-88 (594)
23 cd03562 CID CID (CTD-Interacti 78.3 11 0.00024 33.0 7.5 105 27-144 3-108 (114)
24 smart00582 RPR domain present 72.5 18 0.00039 31.7 7.4 95 43-144 11-107 (121)
25 PF12755 Vac14_Fab1_bd: Vacuol 64.3 25 0.00055 31.0 6.6 76 58-144 22-97 (97)
26 KOG1924 RhoA GTPase effector D 64.2 28 0.0006 41.7 8.5 110 46-163 369-484 (1102)
27 KOG1525 Sister chromatid cohes 54.4 64 0.0014 40.4 9.7 144 8-155 382-538 (1266)
28 KOG2176 Exocyst complex, subun 54.4 7.4 0.00016 45.8 2.0 46 26-78 16-63 (800)
29 COG5602 SIN3 Histone deacetyla 43.4 77 0.0017 38.6 7.7 79 8-87 568-659 (1163)
30 KOG2160 Armadillo/beta-catenin 42.1 1.5E+02 0.0033 32.2 9.2 138 18-160 158-326 (342)
31 KOG1818 Membrane trafficking a 40.3 89 0.0019 36.5 7.6 87 26-114 7-96 (634)
32 PLN03131 hypothetical protein; 36.8 4.8E+02 0.01 31.1 12.4 28 476-503 552-579 (705)
33 cd04962 GT1_like_5 This family 34.1 49 0.0011 32.7 3.9 33 130-162 322-355 (371)
34 PF08513 LisH: LisH; InterPro 33.6 53 0.0011 22.9 2.9 20 87-106 6-25 (27)
35 smart00667 LisH Lissencephaly 33.4 47 0.001 22.3 2.6 21 87-107 9-29 (34)
36 PF12755 Vac14_Fab1_bd: Vacuol 33.4 80 0.0017 27.9 4.7 63 21-94 32-96 (97)
37 KOG0624 dsRNA-activated protei 32.4 4.2E+02 0.0091 29.9 10.7 110 44-156 222-351 (504)
38 cd03817 GT1_UGDG_like This fam 31.3 52 0.0011 31.4 3.4 30 133-162 332-361 (374)
39 COG5218 YCG1 Chromosome conden 30.9 1.4E+02 0.0031 35.2 7.2 90 44-145 27-121 (885)
40 PLN03119 putative ADP-ribosyla 30.2 79 0.0017 36.7 5.1 15 89-103 73-87 (648)
41 PF01603 B56: Protein phosphat 29.8 2.2E+02 0.0048 31.0 8.2 111 28-145 253-371 (409)
42 PF02847 MA3: MA3 domain; Int 29.5 1.4E+02 0.0031 25.6 5.6 11 14-24 1-11 (113)
43 cd03823 GT1_ExpE7_like This fa 29.2 74 0.0016 30.3 4.1 67 85-158 277-343 (359)
44 PF08467 Luteo_P1-P2: Luteovir 27.7 69 0.0015 34.7 3.9 40 125-164 138-177 (361)
45 KOG0396 Uncharacterized conser 27.4 1.9E+02 0.004 32.2 7.0 39 60-98 83-132 (389)
46 PF06881 Elongin_A: RNA polyme 27.0 72 0.0016 28.4 3.4 42 43-87 19-73 (109)
47 cd03814 GT1_like_2 This family 26.5 79 0.0017 30.3 3.8 30 130-159 318-347 (364)
48 PF07571 DUF1546: Protein of u 25.6 2.1E+02 0.0045 25.0 5.9 53 44-99 26-80 (92)
49 cd03821 GT1_Bme6_like This fam 24.9 89 0.0019 29.7 3.8 31 132-162 333-364 (375)
50 cd03795 GT1_like_4 This family 24.5 1.1E+02 0.0024 29.7 4.4 29 130-158 318-346 (357)
51 cd04949 GT1_gtfA_like This fam 24.3 96 0.0021 31.1 4.1 33 130-162 331-363 (372)
52 PF09339 HTH_IclR: IclR helix- 24.1 19 0.0004 27.7 -0.8 39 82-120 2-48 (52)
53 cd03820 GT1_amsD_like This fam 24.1 99 0.0021 29.0 3.8 33 130-162 305-337 (348)
54 PF07064 RIC1: RIC1; InterPro 23.5 5.8E+02 0.012 26.5 9.5 70 27-99 117-196 (258)
55 TIGR02552 LcrH_SycD type III s 23.2 4.7E+02 0.01 22.3 9.3 105 23-142 31-135 (135)
56 PRK07764 DNA polymerase III su 23.1 5.3E+02 0.012 31.1 10.3 34 82-115 263-298 (824)
57 cd03808 GT1_cap1E_like This fa 22.7 1.2E+02 0.0025 28.6 4.1 33 130-162 315-348 (359)
58 PF04904 NCD1: NAB conserved r 22.6 75 0.0016 28.2 2.5 39 45-87 33-71 (82)
59 cd05844 GT1_like_7 Glycosyltra 22.4 1.1E+02 0.0024 30.2 4.0 29 130-158 322-350 (367)
60 smart00346 HTH_ICLR helix_turn 22.4 1.2E+02 0.0026 24.9 3.6 41 81-121 3-51 (91)
61 KOG2713 Mitochondrial tryptoph 22.1 93 0.002 33.7 3.6 71 47-117 271-344 (347)
62 PF03564 DUF1759: Protein of u 21.9 1.2E+02 0.0026 27.3 3.9 46 24-76 24-71 (145)
63 KOG2340 Uncharacterized conser 21.6 1.2E+02 0.0026 35.4 4.5 93 38-142 211-313 (698)
64 PRK11115 transcriptional regul 21.1 7.6E+02 0.017 23.9 12.6 88 5-96 12-103 (236)
65 PF13524 Glyco_trans_1_2: Glyc 20.2 2E+02 0.0043 23.6 4.5 29 130-158 48-76 (92)
66 TIGR01070 mutS1 DNA mismatch r 20.1 2.3E+02 0.0051 33.9 6.7 74 12-92 287-363 (840)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.4e-58 Score=467.33 Aligned_cols=164 Identities=46% Similarity=0.834 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 008572 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAV 88 (561)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtL 88 (561)
.++++|||+|+|+|++|+++|+|||+||+||+|||++++|.|||++||++.+|.+||.||||||++.||+||||||||+|
T Consensus 3 ~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLtl 82 (336)
T KOG2056|consen 3 MSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALTL 82 (336)
T ss_pred ccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccccccccC
Q 008572 89 IEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSST 168 (561)
Q Consensus 89 LEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~GvSSs 168 (561)
|||||+||||+||+|||+|+++|+.|++|+|+|++|+|+|++||+||++|+.||+|+++|++||++|+++|.||.|++..
T Consensus 83 leyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~~~ 162 (336)
T KOG2056|consen 83 LEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFGPG 162 (336)
T ss_pred HHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcc
Q 008572 169 GITY 172 (561)
Q Consensus 169 g~~~ 172 (561)
+..+
T Consensus 163 ~~~~ 166 (336)
T KOG2056|consen 163 SISN 166 (336)
T ss_pred cccc
Confidence 5544
No 2
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=403.83 Aligned_cols=188 Identities=35% Similarity=0.697 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC--chhHHHHHHHHHHHhhcC-CCchhhhhh
Q 008572 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAET-GKDWRYVYK 84 (561)
Q Consensus 8 ~qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn--~~dy~~IM~vLwKRL~d~-gKnWR~VYK 84 (561)
-..||++..+++++||||+++|.+||||||.|||||++.+|.|||++||. +++|.++|.+||.|+.+. .+.||+|||
T Consensus 4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK 83 (499)
T KOG2057|consen 4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK 83 (499)
T ss_pred hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 999999999999997654 578999999
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHh-hcccc
Q 008572 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN-REKYF 163 (561)
Q Consensus 85 ALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkkn-R~Ky~ 163 (561)
+|+||.|||+||+||||.++|+|+|.|+.|++|+|||+.|||||||||+|.++|+++.+|+++|++||+||++. ++||.
T Consensus 84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~ 163 (499)
T KOG2057|consen 84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR 163 (499)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccCCCccCCCCCCCCCCCCCCCCCCCCC-CCCCCccccCCCC
Q 008572 164 GLSSTGITYKSGSASFGTGGYRSSDRYGGS-GDNFRESYKDRDP 206 (561)
Q Consensus 164 GvSSsg~~~~sgs~s~g~g~~~~~~rYGg~-~d~~~d~~rd~~~ 206 (561)
|+.+..+. ++.+..+|... ..-|+..|.-+++
T Consensus 164 G~~qd~mg-----------gf~~SekydpepkS~wDeeWDKe~S 196 (499)
T KOG2057|consen 164 GFDQDDMG-----------GFGSSEKYDPEPKSGWDEEWDKEDS 196 (499)
T ss_pred ccchhhcc-----------ccccccccCCCcccccccccccccc
Confidence 99987652 33456677654 3555555655554
No 3
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=5e-48 Score=346.57 Aligned_cols=123 Identities=51% Similarity=0.940 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 27 e~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
|+|++||||||||||||++++|++||++||++++|.+||++||+||.+++++||||||||+||||||+||||+||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHH
Q 008572 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQ 149 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLr 149 (561)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999985
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=5.3e-42 Score=302.53 Aligned_cols=124 Identities=52% Similarity=0.931 Sum_probs=114.3
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHh-hcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL-~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
||++|++|+||||+|+|||++++|+|||++||++.+|.+||++||+|| ...+++||++||||+||||||+||+++|+.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 7789999999999999999999999999999
Q ss_pred HHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHH
Q 008572 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKI 148 (561)
Q Consensus 104 ~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErL 148 (561)
+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||.|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=1.8e-34 Score=254.88 Aligned_cols=126 Identities=39% Similarity=0.708 Sum_probs=123.2
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
+++|++|++|||+|+|||+.++|.+|+++||++ ..|..||.+||+||.+.+ +||+|||||+||+|||+||+++|+.++
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999999999999999999999999 999999999999999987 999999999999999999999999999
Q ss_pred HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHH
Q 008572 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (561)
Q Consensus 105 R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreER 152 (561)
+.|...|..|.+|+|+|++|+|+|.+||++|+.|.+||.|.++|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.91 E-value=1.1e-24 Score=196.32 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=107.7
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhh-hhHHHHHHHHHHcCCHhHHHHHHhh
Q 008572 30 QKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYV-YKALAVIEYLISHGSERAVDDIIEH 107 (561)
Q Consensus 30 ~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~V-YKALtLLEYLLkNGSErvVdd~R~h 107 (561)
.+|++||+||+|||++.+|.|||+.||+. ..|.+||++|.+||++++ +|| +|||+||.||+.+|++.|+.|+|.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 47899999999999999999999999985 889999999999999876 999 9999999999999999999999999
Q ss_pred hhhhccccceEE-eCC-CCCchhhHHHHHHHHHHHhhcCh
Q 008572 108 TFQISSLSSFEY-VEP-SGKDMGINVRKKAENIVALLNNK 145 (561)
Q Consensus 108 i~~Ir~L~~FqY-iDe-~GKDqGinVReKAkeIleLL~D~ 145 (561)
+++|+.|++|++ .|+ .|.+.+..||++|+++++||-..
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 999999999999 688 99999999999999999999654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.88 E-value=1.1e-22 Score=176.31 Aligned_cols=114 Identities=27% Similarity=0.403 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
.|++|++||+++.|||+..+|.+|++.+++. ..+.+||+.||+||.+. +||++||||+|||||++||.++|..+++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3789999999999999999999999999887 66799999999999886 99999999999999999999999999999
Q ss_pred hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 008572 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D 144 (561)
+.++++.+ .|+|.+..|.+++.+||+|+++|+++..|
T Consensus 79 ~~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 79 NDFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred hHHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 99888765 46888889999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.79 E-value=3.6e-19 Score=156.47 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=104.0
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+|+.|+.||+++.|+|..+.|.+|..+|++ ...+..||..|++||.+ ++|+++||||+||++||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 478899999999999999999999999999 89999999999999998 799999999999999999999999999999
Q ss_pred hhhhhccccceEEeCC-CCCchhhHHHHHHHHHHHhh
Q 008572 107 HTFQISSLSSFEYVEP-SGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe-~GKDqGinVReKAkeIleLL 142 (561)
|...| .|..|++.+. .+.|+|..||..|+-|.+.|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 97666 6778988865 68899999999999988765
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.82 E-value=1.2e-08 Score=100.32 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=83.4
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R 105 (561)
+++|+-|..||+.+.-+|..+.+..|..+|++......++..|.+||... ++|.+++|+|.||+.||+.|++.++.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 57899999999999999999999999999999677888999999999874 58999999999999999999999999998
Q ss_pred hhhhhhccccceEEeC---CCCCchhhHHHHHHHHHH
Q 008572 106 EHTFQISSLSSFEYVE---PSGKDMGINVRKKAENIV 139 (561)
Q Consensus 106 ~hi~~Ir~L~~FqYiD---e~GKDqGinVReKAkeIl 139 (561)
.|...+..+.++.-.| ..+.+++..||.=|+-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~ 117 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLD 117 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHHH
Confidence 8876666666553322 345678888888876554
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=4.3e-07 Score=98.71 Aligned_cols=117 Identities=26% Similarity=0.348 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 008572 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (561)
Q Consensus 24 nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVd 102 (561)
.++.+++.|..||+.|..+|..+.+..|-.+|-.. ....-++..|-+||... ++|.++||||+|+++||++|.+.+..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 57999999999999999999999999999999665 67888999999999986 59999999999999999999999998
Q ss_pred HHHhhhhhhccccceEEe-CCCCCchhhHHHHHHHHHHHhh
Q 008572 103 DIIEHTFQISSLSSFEYV-EPSGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 103 d~R~hi~~Ir~L~~FqYi-De~GKDqGinVReKAkeIleLL 142 (561)
++..+-..| .|.+|.=. ...+-|+..-||.=|+-|-+.|
T Consensus 99 ~l~~~~~~l-~lS~F~d~s~~~~~d~safVR~Ya~YLderl 138 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDFRDKSSSLTWDMSAFVRTYALYLDERL 138 (491)
T ss_pred HHHhccccc-chhhhhcccccccchhhHHHHHHHHHHHHHH
Confidence 887666333 34566211 2236688889997776554433
No 11
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.04 E-value=1.3e-05 Score=72.93 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
.++++.+|.+||+...-.|.-..+-+|++.-. +.....+++..|.|||.. .+-+.++-||+|||+|++|+.+++-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 57899999999999888888888888888753 356778899999999999 589999999999999999999988877
Q ss_pred HHhh--hhhhccccceEEeCCCCCchhhH--HHHHHHHHHHhh
Q 008572 104 IIEH--TFQISSLSSFEYVEPSGKDMGIN--VRKKAENIVALL 142 (561)
Q Consensus 104 ~R~h--i~~Ir~L~~FqYiDe~GKDqGin--VReKAkeIleLL 142 (561)
+-.. +..|..|-.-.+ .+.. ||+|+.+++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~~-------~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKK-------TDPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTT-------THHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCC-------CCchhHHHHHHHHHHHHH
Confidence 6332 333333222111 2223 999998887654
No 12
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.67 E-value=0.00028 Score=64.24 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 008572 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (561)
Q Consensus 29 E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~h 107 (561)
|.+|.+||+...-.|.-..+-+|++.-.. ...-.+.++.|.|||.. ++-+.++.||+|||+|++|+-.+|..++-..
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 67899999987778888888888887633 44567899999999996 4788999999999999999988887776433
Q ss_pred hhhhccccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 008572 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 108 i~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL 142 (561)
-+ +..|... +... .....||+|+.+++.-.
T Consensus 80 ~f-l~~L~~l--~~~~--~~~~~Vk~kil~li~~W 109 (133)
T smart00288 80 EF-LNELVKL--IKPK--YPLPLVKKRILELIQEW 109 (133)
T ss_pred HH-HHHHHHH--HcCC--CCcHHHHHHHHHHHHHH
Confidence 22 2222211 1111 11112999988887654
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.66 E-value=0.00029 Score=65.51 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+|.+|..||+...-.|.-.++-+|++.-.. ...-.+.|..|.|||.. ++-+.++.||.|||-|++|+-.+|-.++-.
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evas 78 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVAS 78 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 378899999987777777888888877533 45567799999999986 478899999999999999999998877743
Q ss_pred hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
. ..+..|... +... .-..||+|+.+|+.-..
T Consensus 79 k-~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 79 R-DFTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred H-HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 2 222223222 1211 34589999988887653
No 14
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.57 E-value=0.00064 Score=62.95 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=77.0
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
.+.+|.+||+...-.|.=.+.-+|++.-... ..-.+.|..|.|||. ++++-+.++-||+|||-|++|+-.+|-.++-.
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias 80 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK 80 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 5789999999876666777777777765433 445789999999996 45688899999999999999999998877633
Q ss_pred hhhhhcc-ccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 107 HTFQISS-LSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 107 hi~~Ir~-L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
. ..+.. |... +.+. .+.-..||+|+.+|+.-..
T Consensus 81 k-~Fl~e~L~~~--i~~~-~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 81 K-DFIKDVLVKL--INPK-NNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred H-HhhhHHHHHH--Hccc-CCCcHHHHHHHHHHHHHHH
Confidence 3 11221 2111 1111 1123478888888776543
No 15
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.54 E-value=0.0012 Score=61.32 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=80.4
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
.++++.+|.+||+...-.|.-..+-+|++.-.. ...-.+.+..|.|||.. ++-+.++-||.|||.|++|+-.++-.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 468899999999977777777787777776533 34567899999999988 489999999999999999988887776
Q ss_pred HHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 104 ~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
+-+.- .+..|... +.. ..-..||+|+-+|+.-..
T Consensus 80 vas~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASRE-FMDELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHH-HHHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 64322 12222211 111 233589999888876543
No 16
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.50 E-value=0.00093 Score=60.57 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 008572 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (561)
Q Consensus 29 E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~h 107 (561)
+.+|.+||+...-.|.-.++-+|+..-.. ...-.+.++.|.|||... +-+..+.||.|||.|++|+...+-.++-..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 46799999986666777788888877543 456788999999999975 788999999999999999999887777553
Q ss_pred hhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 108 i~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
-++.+ |... +... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHHH
Confidence 33322 2222 1111 1245689999988887553
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.38 E-value=0.0022 Score=59.71 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=80.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+|.+|..||+.-.-.|.-.++-+|++.-.. ...-.+.+..|.|||... +-+.++-||.|||.|++|+-.+|-.++-.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas 79 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGK 79 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 688999999987777777788888877543 344567999999999865 67899999999999999999988777643
Q ss_pred --hhh-hhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 107 --HTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 107 --hi~-~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
.+. +++.+.. +| .|...-..||+|+.+|+.-..
T Consensus 80 ~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 80 FRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 232 2332221 22 133344699999998887665
No 18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0068 Score=66.41 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+..+|..||+..--+|.=.+--|||+.-- ......+++..|.|||..+.. +..|=||+|||=|++|+-+.|=.++-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45789999998777777778888888763 345566899999999998754 788889999999999998876655433
Q ss_pred hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHh
Q 008572 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleL 141 (561)
--.+=+.++.|+|.. .-..||+|+-+||+.
T Consensus 80 k~fL~emVk~~k~~~-----~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKP-----RDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccccCC-----cchhHHHHHHHHHHH
Confidence 333333556665532 456999999888875
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=94.39 E-value=0.4 Score=52.32 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=82.2
Q ss_pred CCHHHHHHHHhhcC----CCCCCCHHHHHHHHHH-ccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 008572 25 VPEIEQKVLDATDN----EPWGPHGTALAEIAQA-TKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (561)
Q Consensus 25 ySe~E~KVREATSN----DpWGPs~slM~EIA~a-Tfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSEr 99 (561)
.+++|..|..||+. |.|+ ++-+||.. +-+.+-=...|+.|.|||+.. .--.|+-||+||+-|+.|+-.+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred cchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcchH
Confidence 57899999999984 6775 55566655 344555667899999999987 5668999999999999999999
Q ss_pred HHHHH--HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhc
Q 008572 100 AVDDI--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANRE 160 (561)
Q Consensus 100 vVdd~--R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~ 160 (561)
+..++ |+-...++.|-.=.- - --.-..||.-.++..+-..++..|.-.-.-.+++|.
T Consensus 80 ~r~EVsSr~F~~el~al~~~~~-h---~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELRALIESKA-H---PKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred HHHHHhhhhHHHHHHHHHhhcc-c---HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 98887 444445554432111 0 012223444444444445555555555555555554
No 20
>PLN03131 hypothetical protein; Provisional
Probab=88.33 E-value=8.3 Score=44.57 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=30.9
Q ss_pred ccccccccCCCCCccCCCCCcccccCCCCCCCCCCC-CCCCCCCCCCCCCCCccc
Q 008572 358 KTEVDLFSSQPVDFSAAPAPVDLFAAPEPAVHPEPK-APKSEPTTTNIVDPFATV 411 (561)
Q Consensus 358 q~~vdlf~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dpfa~v 411 (561)
..-|||| | .-+++-++.+|+|..++-...|..+ .+.++...|..+|=||.+
T Consensus 359 a~pIDLF--q-lp~ts~a~~vdlf~~s~l~~~p~~n~~q~~qts~p~~~dlfag~ 410 (705)
T PLN03131 359 APPIDLF--Q-LPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSIDLFGGI 410 (705)
T ss_pred CCchhhh--h-ccCCCCCCcccccccCcccCCCccccCCCCcccCCccccccccc
Confidence 5678888 3 3344555578888754422223333 335666778888888765
No 21
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.49 E-value=0.95 Score=53.35 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh
Q 008572 30 QKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF 109 (561)
Q Consensus 30 ~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~ 109 (561)
.-|+.|++.+...|..++..-|.-.|++...-... =+..+|+.- ..+-...+|.+.||+-||+.|.+.++.+.+.|..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~F-Wt~ik~~PL-~~~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIF-WTTIKRQPL-ENHEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccchhH-HHHhhcccc-ccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 56889999999999999999999999885443222 222233322 1355677899999999999999999999999999
Q ss_pred hhccccceE-EeCCCCCchhhHHHHHHHHHHH
Q 008572 110 QISSLSSFE-YVEPSGKDMGINVRKKAENIVA 140 (561)
Q Consensus 110 ~Ir~L~~Fq-YiDe~GKDqGinVReKAkeIle 140 (561)
.|+.|.++. +.. +++|.-||.-++-|..
T Consensus 87 ~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 87 WITQLGRMWGHLS---DGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHhcccc---ccchHHHHHHHHHHHH
Confidence 999997762 222 5789999988876554
No 22
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.73 E-value=5.7 Score=44.36 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHH-HHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQ-MVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~-~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
-.+|..|-.||+--.---.-+.++-+++.-|...+=. .-...|-..|. ...+|--+| ||++|||+++||-|+|=+++
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiq-SPqe~EAl~-altvLe~cmkncGekfH~ev 84 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQ-SPQEWEALQ-ALTVLEYCMKNCGEKFHEEV 84 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3566777777762111111123333443333221111 12222222222 356887765 89999999999999988776
Q ss_pred Hhhh
Q 008572 105 IEHT 108 (561)
Q Consensus 105 R~hi 108 (561)
-...
T Consensus 85 gkfr 88 (594)
T KOG1086|consen 85 GKFR 88 (594)
T ss_pred HHHH
Confidence 5443
No 23
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=78.31 E-value=11 Score=32.98 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 27 e~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+++..+++-|.+...++.-..|..+|.. +......|+.+|.++|..... ++-+-.|-|++-+++|.-.+....+..
T Consensus 3 ~~~~~l~~L~~~~~S~~~I~~lt~~a~~--~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 3 DYNALLEKLTFNKNSQPSIQTLTKLAIE--NRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred cHHHHHHHHHcCcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHH
Confidence 4455666667766555554444444443 346778899999999987643 777789999999999977766665555
Q ss_pred hhh-hhccccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 008572 107 HTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (561)
Q Consensus 107 hi~-~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D 144 (561)
.+. ++. .-|+- .-..+|+|..+|+++-++
T Consensus 79 ~~~~~f~--~~~~~-------~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 79 FLVPLFL--DAYEK-------VDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHH--HHHHh-------CCHHHHHHHHHHHHHccC
Confidence 432 221 12221 234788888888887544
No 24
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=72.48 E-value=18 Score=31.74 Aligned_cols=95 Identities=5% Similarity=0.088 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh-hhccccceEEe
Q 008572 43 PHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF-QISSLSSFEYV 120 (561)
Q Consensus 43 Ps~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~-~Ir~L~~FqYi 120 (561)
++...++.+....- +.+....|+++|.+++.....+ +-+-.|-|++-+|+|+.......++..+. .|.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666666666653 4456678999999999876443 44568899999999987664444443322 1111 11111
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcC
Q 008572 121 EPSGKDMGINVRKKAENIVALLNN 144 (561)
Q Consensus 121 De~GKDqGinVReKAkeIleLL~D 144 (561)
..... ..+|+|..+|+++=++
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 4799999999998765
No 25
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=64.26 E-value=25 Score=31.03 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHH
Q 008572 58 FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAEN 137 (561)
Q Consensus 58 ~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAke 137 (561)
.+.+..|++.|.+.|.+. +||.=|=|..-|-.|++..-+.++..+-+-...|-.| . .|.-.+||.-|+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-----~----~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-----S----ADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----cCCchhHHHHHHH
Confidence 355667999999888887 8999999999999999998777766443333332221 1 2455689999999
Q ss_pred HHHhhcC
Q 008572 138 IVALLNN 144 (561)
Q Consensus 138 IleLL~D 144 (561)
|-.||.|
T Consensus 91 Ld~llkd 97 (97)
T PF12755_consen 91 LDRLLKD 97 (97)
T ss_pred HHHHhcC
Confidence 9999987
No 26
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=64.23 E-value=28 Score=41.66 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHHHHhhcCC--CchhhhhhHHHHH--HHHHHcCCHhHHHHHHhhhhhhccc--cceEE
Q 008572 46 TALAEIAQATKKFSECQMVMNVLWTRLAETG--KDWRYVYKALAVI--EYLISHGSERAVDDIIEHTFQISSL--SSFEY 119 (561)
Q Consensus 46 slM~EIA~aTfn~~dy~~IM~vLwKRL~d~g--KnWR~VYKALtLL--EYLLkNGSErvVdd~R~hi~~Ir~L--~~FqY 119 (561)
+++..+-.-+.+++++.+++.+||.-+.+.+ -.+..|+.-|+|+ +|-++--.-.+|++|...|.+=+.- -+|+|
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Confidence 4455555667889999999999999998874 4566666655555 3444444434555555544433322 34555
Q ss_pred eCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccc
Q 008572 120 VEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYF 163 (561)
Q Consensus 120 iDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~ 163 (561)
...=..| ..+|++-+.|.+++++-|++|..+..||-
T Consensus 449 r~~l~id--------~~~liD~~vdkak~eeseqkA~e~~kk~~ 484 (1102)
T KOG1924|consen 449 RFRLDID--------LTELIDKMVDKAKAEESEQKAAELEKKFD 484 (1102)
T ss_pred hhcccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211112 46788889999999999999999888864
No 27
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.43 E-value=64 Score=40.38 Aligned_cols=144 Identities=13% Similarity=0.011 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHH-HhhcCCCHHHH---HHHHhhcCCCCCCCHHHHHHHHHHccCc--hhHHHHHHHHHHHhhcCC-----
Q 008572 8 DQTVREIKREVN-LKVLKVPEIEQ---KVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETG----- 76 (561)
Q Consensus 8 ~qtvReikRkVk-n~V~nySe~E~---KVREATSNDpWGPs~slM~EIA~aTfn~--~dy~~IM~vLwKRL~d~g----- 76 (561)
.+-+|+-|-+|+ .+++..+++=+ ..+.|-+.+-|+|...+-.+|.+.-|.- ++-..|-.+|..-|..+.
T Consensus 382 ~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~ 461 (1266)
T KOG1525|consen 382 AERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQE 461 (1266)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHH
Confidence 334444444443 24444444444 4567777888888888888888887754 333334455555565442
Q ss_pred --CchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHH
Q 008572 77 --KDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNK 154 (561)
Q Consensus 77 --KnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReK 154 (561)
+.|.++|..|-++.+-.-+-=-.+...+|.++...=.|..++|.|. .-..|..+...|.+.|-|+-....-+.+
T Consensus 462 Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~ 537 (1266)
T KOG1525|consen 462 RMKHLYQLLAGLDLNAHKAFNEILKRQSRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMK 537 (1266)
T ss_pred HHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHH
Confidence 4565555555544443333222334445555543335677777663 4446777777777777777555544444
Q ss_pred H
Q 008572 155 A 155 (561)
Q Consensus 155 A 155 (561)
.
T Consensus 538 f 538 (1266)
T KOG1525|consen 538 F 538 (1266)
T ss_pred H
Confidence 4
No 28
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.39 E-value=7.4 Score=45.78 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=36.4
Q ss_pred CHHHHHHH--HhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCc
Q 008572 26 PEIEQKVL--DATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKD 78 (561)
Q Consensus 26 Se~E~KVR--EATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKn 78 (561)
.+.|+.|. |+|+.+.|||+ .|..|+...-..+|..|..|+.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH
Confidence 45555554 89999999999 677888888888999999888877654
No 29
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=43.37 E-value=77 Score=38.57 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHH--HHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHH-----------HHHHHhhc
Q 008572 8 DQTVREIK--REVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMN-----------VLWTRLAE 74 (561)
Q Consensus 8 ~qtvReik--RkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~-----------vLwKRL~d 74 (561)
..+.|-|+ .++.+.+.+.+|.|+....--.+ -=+|+-++..++...-|..++-++|++ ++.|||..
T Consensus 568 ea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~g-lg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~ 646 (1163)
T COG5602 568 EATQRTIKALEQIIDKIKDMEESEKANKTLPGG-LGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM 646 (1163)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCc-CCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34555555 56667777888777654432111 126788899999999999988888765 55678888
Q ss_pred CCCchhhhhhHHH
Q 008572 75 TGKDWRYVYKALA 87 (561)
Q Consensus 75 ~gKnWR~VYKALt 87 (561)
+.++||.+...+.
T Consensus 647 Kd~EWR~~kRew~ 659 (1163)
T COG5602 647 KDEEWRSCKREWN 659 (1163)
T ss_pred hhHHHHHHHHHHH
Confidence 8888887655443
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=1.5e+02 Score=32.23 Aligned_cols=138 Identities=16% Similarity=0.196 Sum_probs=86.5
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc----hhHHHH--HHHHHHHhhcCCCchhhhhhHHHHHHH
Q 008572 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF----SECQMV--MNVLWTRLAETGKDWRYVYKALAVIEY 91 (561)
Q Consensus 18 Vkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~----~dy~~I--M~vLwKRL~d~gKnWR~VYKALtLLEY 91 (561)
+|+.|+.+.-.+.+++-.+.+++-....+.|..|+-+-.+. ..|..| ..+|..-|..++..-|-.-|++.||.|
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34567777777777777888888898899999998876653 233332 456777788888899999999999999
Q ss_pred HHHcCCHhHHHHHHhhhh----------------------hhccccceEEeCCCCC---chhhHHHHHHHHHHHhhcChH
Q 008572 92 LISHGSERAVDDIIEHTF----------------------QISSLSSFEYVEPSGK---DMGINVRKKAENIVALLNNKD 146 (561)
Q Consensus 92 LLkNGSErvVdd~R~hi~----------------------~Ir~L~~FqYiDe~GK---DqGinVReKAkeIleLL~D~E 146 (561)
|+.---...- .+..+.. ++..|..+. .++ +--.+-|+.-++.+.++.+-.
T Consensus 238 Ll~~~~s~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~----~~~~~~~~~~~l~e~l~~~~q~~~~~~ 312 (342)
T KOG2160|consen 238 LLQEDKSDED-IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS----TRKELFVSLLNLEELLKSLIQIISDHA 312 (342)
T ss_pred HHHhhhhhhh-HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh----hcchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9976432211 1111111 111112221 111 123466777777777777666
Q ss_pred HHHHHHHHHHHhhc
Q 008572 147 KIQEVRNKASANRE 160 (561)
Q Consensus 147 rLreEReKAkknR~ 160 (561)
.++++|+-+.....
T Consensus 313 ~~~~e~~l~~~l~~ 326 (342)
T KOG2160|consen 313 ALEEERQLVNSLWE 326 (342)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777766655443
No 31
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.32 E-value=89 Score=36.51 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=63.1
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
|..+.++..||+-+..-+.-...-||...... ...+..-|..|.+|++ ..+-+...=+|.|+++.++||--.|..++
T Consensus 7 ~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 7 SAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred hHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 45677788899877755566666666666543 3445567888888888 45777778899999999999886777665
Q ss_pred --Hhhhhhhccc
Q 008572 105 --IEHTFQISSL 114 (561)
Q Consensus 105 --R~hi~~Ir~L 114 (561)
|+.+..|..+
T Consensus 85 ~tre~m~~~~~~ 96 (634)
T KOG1818|consen 85 ATREFMDLLKSL 96 (634)
T ss_pred HHHHHHHHHHhh
Confidence 6667766654
No 32
>PLN03131 hypothetical protein; Provisional
Probab=36.76 E-value=4.8e+02 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=21.6
Q ss_pred cccccceeccccccccccccccceeccC
Q 008572 476 SLSRGIIDLNISASKKVSLADVGVVGGL 503 (561)
Q Consensus 476 slsrgli~lni~~pk~~~~~d~g~~~~~ 503 (561)
.-+|+|-||+-.+|+..--+|+|-.-++
T Consensus 552 ~~~~~~~d~~~d~~~r~~p~~~~~~~g~ 579 (705)
T PLN03131 552 IGCKALEDFNKDGIKRTAPHGQGELPGL 579 (705)
T ss_pred cccccccccccccccccCCCCCcCCCCC
Confidence 3478999999999999888888544333
No 33
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=34.09 E-value=49 Score=32.66 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkkn-R~Ky 162 (561)
++.+-|+.|.+||+|++.+++.++++++. +++|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 56778999999999999998888888876 5543
No 34
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=33.55 E-value=53 Score=22.92 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCHhHHHHHHh
Q 008572 87 AVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 87 tLLEYLLkNGSErvVdd~R~ 106 (561)
.|++||+++|-......++.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58899999999887776653
No 35
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=33.43 E-value=47 Score=22.26 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCHhHHHHHHhh
Q 008572 87 AVIEYLISHGSERAVDDIIEH 107 (561)
Q Consensus 87 tLLEYLLkNGSErvVdd~R~h 107 (561)
.|++||+.+|-......++.-
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e 29 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKE 29 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 499999999998877666543
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=33.40 E-value=80 Score=27.93 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=44.9
Q ss_pred hhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC--chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHH
Q 008572 21 KVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLIS 94 (561)
Q Consensus 21 ~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn--~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLk 94 (561)
++..++.-+.+||.+. -+.|.+|+..... ...|.+|+..|+|.+.|...+ |-++-.+|+.|||
T Consensus 32 VL~~~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 32 VLKCFDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HHHHcCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 4455566666777553 3456666666543 356899999999999998655 6667889999987
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=32.43 E-value=4.2e+02 Score=29.85 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHccCchhHHHHHHHHHHHhhcC--C-------CchhhhhhHHHHHHHHHHcCCHh-HHHHHHhhhh----
Q 008572 44 HGTALAEIAQATKKFSECQMVMNVLWTRLAET--G-------KDWRYVYKALAVIEYLISHGSER-AVDDIIEHTF---- 109 (561)
Q Consensus 44 s~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~--g-------KnWR~VYKALtLLEYLLkNGSEr-vVdd~R~hi~---- 109 (561)
++..|.+|+++-|.+-+...-+..|..+|.-. . |.-|.|-|+|--.+-++.++.-. |+..-..-+.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 56778899999999888888888888888532 2 45566666666666666666432 3332111111
Q ss_pred --hhccccceEEe----CCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 008572 110 --QISSLSSFEYV----EPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKAS 156 (561)
Q Consensus 110 --~Ir~L~~FqYi----De~GKDqGinVReKAkeIleLL~D~ErLreEReKAk 156 (561)
.| .+.-|..+ -++|. .|..||+ |++|++..-|+-.+--+|..|-
T Consensus 302 ~~~i-r~~~~r~~c~C~~~d~~-~~eAiqq-C~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 302 ETMI-RYNGFRVLCTCYREDEQ-FGEAIQQ-CKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred ccce-eeeeeheeeecccccCC-HHHHHHH-HHHHHhcCchHHHHHHHHHHHH
Confidence 11 12333222 22322 5666665 7777777766555555555443
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=31.29 E-value=52 Score=31.38 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 008572 133 KKAENIVALLNNKDKIQEVRNKASANREKY 162 (561)
Q Consensus 133 eKAkeIleLL~D~ErLreEReKAkknR~Ky 162 (561)
+-++.|.+||+|++.+++.++++++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 778899999999999888888777765543
No 39
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.88 E-value=1.4e+02 Score=35.21 Aligned_cols=90 Identities=24% Similarity=0.265 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHccCchhHHHHHHHHHHHhhcC--CCchhhhhhHH-HHHHHHHHcCCH--hHHHHHHhhhhhhccccceE
Q 008572 44 HGTALAEIAQATKKFSECQMVMNVLWTRLAET--GKDWRYVYKAL-AVIEYLISHGSE--RAVDDIIEHTFQISSLSSFE 118 (561)
Q Consensus 44 s~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~--gKnWR~VYKAL-tLLEYLLkNGSE--rvVdd~R~hi~~Ir~L~~Fq 118 (561)
+.+.++++-..-+...--..+.+++-+-|.-+ +..--+|+|-| +.++|++.+-+| ++|+-+-.|+ |+-
T Consensus 27 hrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~--lRg----- 99 (885)
T COG5218 27 HRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHL--LRG----- 99 (885)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHH--Hhc-----
Confidence 56666666655544333334555555555433 44556666655 578999999887 5777665553 322
Q ss_pred EeCCCCCchhhHHHHHHHHHHHhhcCh
Q 008572 119 YVEPSGKDMGINVRKKAENIVALLNNK 145 (561)
Q Consensus 119 YiDe~GKDqGinVReKAkeIleLL~D~ 145 (561)
+|.. -.+||.++-+|+++|.|-
T Consensus 100 -~esk----dk~VR~r~lqila~~~d~ 121 (885)
T COG5218 100 -TESK----DKKVRKRSLQILALLSDV 121 (885)
T ss_pred -ccCc----chhHHHHHHHHHHHHHHh
Confidence 2322 238999999999999873
No 40
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=30.18 E-value=79 Score=36.73 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=10.3
Q ss_pred HHHHHHcCCHhHHHH
Q 008572 89 IEYLISHGSERAVDD 103 (561)
Q Consensus 89 LEYLLkNGSErvVdd 103 (561)
|+.|...|.+++-.-
T Consensus 73 Ve~Mk~gGN~~AN~i 87 (648)
T PLN03119 73 VEVLQNGGNQRAREI 87 (648)
T ss_pred HHHHHHhchHHHHHH
Confidence 677778887765443
No 41
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=29.82 E-value=2.2e+02 Score=30.97 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCCCCCCHHH---HHHHHHH--ccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcCCHhH
Q 008572 28 IEQKVLDATDNEPWGPHGTA---LAEIAQA--TKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHGSERA 100 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~sl---M~EIA~a--Tfn~~dy~~IM~vLwKRL~d--~gKnWR~VYKALtLLEYLLkNGSErv 100 (561)
++.-|+.-...=|+.-+.+. |.||... .....++..|+..|++||.. ...+++..-.||.++. .+.+
T Consensus 253 ~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~------n~~~ 326 (409)
T PF01603_consen 253 AEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN------NEYF 326 (409)
T ss_dssp HHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG------SHHH
T ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC------CHHH
Confidence 33444444444444444433 2233333 24668899999999999975 4568888888887753 3444
Q ss_pred HHHHHhhhhhhccccceEEeCCCC-CchhhHHHHHHHHHHHhhcCh
Q 008572 101 VDDIIEHTFQISSLSSFEYVEPSG-KDMGINVRKKAENIVALLNNK 145 (561)
Q Consensus 101 Vdd~R~hi~~Ir~L~~FqYiDe~G-KDqGinVReKAkeIleLL~D~ 145 (561)
+..+.+|...|-.+ =|..+..+. .-|-..||..|.+++.+|.|-
T Consensus 327 ~~li~~~~~~i~p~-i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 327 LSLISQNSRVILPI-IFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHCTHHHHHHH-HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhChHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44444443322110 010011111 247789999999999999764
No 42
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.55 E-value=1.4e+02 Score=25.56 Aligned_cols=11 Identities=0% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHhhcC
Q 008572 14 IKREVNLKVLK 24 (561)
Q Consensus 14 ikRkVkn~V~n 24 (561)
+||++++.|+.
T Consensus 1 ~rk~i~~~l~e 11 (113)
T PF02847_consen 1 LRKKIFSILME 11 (113)
T ss_dssp HHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 35555554443
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=29.24 E-value=74 Score=30.32 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 008572 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN 158 (561)
Q Consensus 85 ALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkkn 158 (561)
.+.|+|+|. .|.+=|+.+.-....+|..-..--+++.. .+.+-++.|.+||+|++.+++.++++++.
T Consensus 277 ~~~~~Ea~a-~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~------d~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 277 PLVIREALA-AGVPVIASDIGGMAELVRDGVNGLLFPPG------DAEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred ChHHHHHHH-CCCCEEECCCCCHHHHhcCCCcEEEECCC------CHHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 556888876 45544444332222333322111122321 36778999999999999988888777654
No 44
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=27.72 E-value=69 Score=34.69 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.3
Q ss_pred CchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccccc
Q 008572 125 KDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFG 164 (561)
Q Consensus 125 KDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~G 164 (561)
.|+-..-+.|++.+++||++.+.|...+.++++.-.+-.|
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G 177 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIG 177 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999888888876655554
No 45
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.38 E-value=1.9e+02 Score=32.15 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhc-----------CCCchhhhhhHHHHHHHHHHcCCH
Q 008572 60 ECQMVMNVLWTRLAE-----------TGKDWRYVYKALAVIEYLISHGSE 98 (561)
Q Consensus 60 dy~~IM~vLwKRL~d-----------~gKnWR~VYKALtLLEYLLkNGSE 98 (561)
-+.++.+.+..||.. .-..|-+.+=.-.|.|||++||.-
T Consensus 83 ~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~ 132 (389)
T KOG0396|consen 83 SEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYF 132 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCch
Confidence 344577777777641 125799999999999999999973
No 46
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=27.00 E-value=72 Score=28.39 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHccCchhHHHHHHHHHHHhhc--C-----------CCchhhhhhHHH
Q 008572 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE--T-----------GKDWRYVYKALA 87 (561)
Q Consensus 43 Ps~slM~EIA~aTfn~~dy~~IM~vLwKRL~d--~-----------gKnWR~VYKALt 87 (561)
++..+|..|-..+ .++....+.||++|.. . +..||.+|-.|.
T Consensus 19 ~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 19 CSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLK 73 (109)
T ss_pred CCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHH
Confidence 3667777777765 5666677889999853 1 258999887543
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.50 E-value=79 Score=30.30 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhh
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASANR 159 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkknR 159 (561)
++.+-++.|.+|++|++.+++..+++++..
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 455678999999999999888888777654
No 48
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.60 E-value=2.1e+02 Score=24.99 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHcc--CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 008572 44 HGTALAEIAQATK--KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (561)
Q Consensus 44 s~slM~EIA~aTf--n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSEr 99 (561)
..++|..|++.-- ...-..+|++.+.+.|.+..+.+-..|=||.-|..| |+|-
T Consensus 26 AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 26 AASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 3567777776521 134566899999999999999999999999999999 6643
No 49
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=24.87 E-value=89 Score=29.70 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 008572 132 RKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (561)
Q Consensus 132 ReKAkeIleLL~D~ErLreEReKAkkn-R~Ky 162 (561)
.+-++.|..|++|++..++.++++++. +++|
T Consensus 333 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T cd03821 333 DALAAALRRALELPQRLKAMGENGRALVEERF 364 (375)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 667899999999998888888888776 5554
No 50
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.51 E-value=1.1e+02 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkkn 158 (561)
++.+-++.|..||+|++.+++.++++++.
T Consensus 318 d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 318 DPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 57778999999999999988888888764
No 51
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=24.32 E-value=96 Score=31.09 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkknR~Ky 162 (561)
++-+-|+.|..||+|++.+++.++++++...+|
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 677889999999999999999988888775554
No 52
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=24.10 E-value=19 Score=27.73 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHhhhh--------hhccccceEEe
Q 008572 82 VYKALAVIEYLISHGSERAVDDIIEHTF--------QISSLSSFEYV 120 (561)
Q Consensus 82 VYKALtLLEYLLkNGSErvVdd~R~hi~--------~Ir~L~~FqYi 120 (561)
|-|+|.||++|..++..--+.++-+++. +|+.|.+--|+
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence 5689999999999998744445444332 45555554444
No 53
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=24.06 E-value=99 Score=28.95 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkknR~Ky 162 (561)
++.+-++.|.+||+|++++++.++++++...+|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999998888887666554
No 54
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.52 E-value=5.8e+02 Score=26.46 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCCC-----CCCHHHHHHHHHHccCchhHHH-HHHHHHHHhhcCCCchhhhhhHH----HHHHHHHHcC
Q 008572 27 EIEQKVLDATDNEPW-----GPHGTALAEIAQATKKFSECQM-VMNVLWTRLAETGKDWRYVYKAL----AVIEYLISHG 96 (561)
Q Consensus 27 e~E~KVREATSNDpW-----GPs~slM~EIA~aTfn~~dy~~-IM~vLwKRL~d~gKnWR~VYKAL----tLLEYLLkNG 96 (561)
-+|.++.++..++.- .+...++..+...-.++.+|.+ |++++.| +. -+.|+.+++.| .|++-+|.+|
T Consensus 117 ~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C~RK-tE--~~~W~~LF~~lg~P~dLf~~cl~~~ 193 (258)
T PF07064_consen 117 ALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNCARK-TE--VRYWPYLFDYLGSPRDLFEECLENG 193 (258)
T ss_pred HHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHHHHh-hH--HHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 357777777776654 5677788888877766666655 4444443 22 35899999876 6888888887
Q ss_pred CHh
Q 008572 97 SER 99 (561)
Q Consensus 97 SEr 99 (561)
.-+
T Consensus 194 ~l~ 196 (258)
T PF07064_consen 194 NLK 196 (258)
T ss_pred cHH
Confidence 655
No 55
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.21 E-value=4.7e+02 Score=22.27 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 008572 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (561)
Q Consensus 23 ~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVd 102 (561)
-++.++...++.+...+|+ .......++..-+...+|.....++.+.+...+.+|...|. |-.+. +...-.++++.
T Consensus 31 ~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~-~~~g~~~~A~~ 106 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAECL-LALGEPESALK 106 (135)
T ss_pred ccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHHH-HHcCCHHHHHH
Confidence 3566666777777777666 34555566666666667777776666666555555555443 22222 22233344555
Q ss_pred HHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 008572 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 103 d~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL 142 (561)
.++.-+.+. ++ .......++++..++++|
T Consensus 107 ~~~~al~~~----------p~-~~~~~~~~~~~~~~~~~~ 135 (135)
T TIGR02552 107 ALDLAIEIC----------GE-NPEYSELKERAEAMLESL 135 (135)
T ss_pred HHHHHHHhc----------cc-cchHHHHHHHHHHHHhcC
Confidence 554333322 11 123345677777777765
No 56
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.15 E-value=5.3e+02 Score=31.10 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHcCCH--hHHHHHHhhhhhhcccc
Q 008572 82 VYKALAVIEYLISHGSE--RAVDDIIEHTFQISSLS 115 (561)
Q Consensus 82 VYKALtLLEYLLkNGSE--rvVdd~R~hi~~Ir~L~ 115 (561)
+.++|.+|+.|+.+|-+ +++.++.+|+..|-.|+
T Consensus 263 ~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vk 298 (824)
T PRK07764 263 GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQ 298 (824)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44677889999998854 57777777665443333
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=22.70 E-value=1.2e+02 Score=28.62 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkkn-R~Ky 162 (561)
++.+-++.|.+|+.|++.+++..+++++. +++|
T Consensus 315 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (359)
T cd03808 315 DAEALADAIERLIEDPELRARMGQAARKRAEEEF 348 (359)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 47778999999999999998888777766 5443
No 58
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.63 E-value=75 Score=28.21 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 008572 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA 87 (561)
Q Consensus 45 ~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALt 87 (561)
+..+++|+.+- .++|.+||+++- +..++-+-|+..|||+
T Consensus 33 gDDvqQL~~~~--e~eF~eim~lvG--M~sKPLHVrRlqKAL~ 71 (82)
T PF04904_consen 33 GDDVQQLCEAG--EEEFLEIMALVG--MASKPLHVRRLQKALQ 71 (82)
T ss_pred ChhHHHHHhcC--hHHHHHHHHHhC--ccCccHHHHHHHHHHH
Confidence 34456666664 389999999886 7788889999999875
No 59
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=22.36 E-value=1.1e+02 Score=30.20 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkkn 158 (561)
++.+-++.|.+||+|++.+++.++++++.
T Consensus 322 d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 322 DVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 56778899999999999887777776553
No 60
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=22.36 E-value=1.2e+02 Score=24.88 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHcCCHhHHHHHHhhhh--------hhccccceEEeC
Q 008572 81 YVYKALAVIEYLISHGSERAVDDIIEHTF--------QISSLSSFEYVE 121 (561)
Q Consensus 81 ~VYKALtLLEYLLkNGSErvVdd~R~hi~--------~Ir~L~~FqYiD 121 (561)
-+-|+|.||+||..++.+--+.++-+++. .|+.|.+-.|+.
T Consensus 3 ~~~r~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~ 51 (91)
T smart00346 3 SLERGLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVE 51 (91)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 35689999999998833344444433332 456665555554
No 61
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.14 E-value=93 Score=33.66 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHHc--cCchhHHH-HHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccce
Q 008572 47 ALAEIAQAT--KKFSECQM-VMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSF 117 (561)
Q Consensus 47 lM~EIA~aT--fn~~dy~~-IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~F 117 (561)
...||.+.+ .+.-+|.. +-+.|.++|.--..+.-++..-=..|+++|.-|.|+..+.+..++..|+.+.-|
T Consensus 271 s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf 344 (347)
T KOG2713|consen 271 SIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKARELAAKNLEEIKQLMGF 344 (347)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 344555433 34555554 667778888654434433333456799999999999999999999999887665
No 62
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=21.91 E-value=1.2e+02 Score=27.26 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCHHHHHH--HHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCC
Q 008572 24 KVPEIEQKV--LDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETG 76 (561)
Q Consensus 24 nySe~E~KV--REATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~g 76 (561)
.+++.++.. +.++ ++....-|.........|..++..|.+|..+..
T Consensus 24 ~~~d~~K~~~L~~~L-------~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~ 71 (145)
T PF03564_consen 24 DLSDIEKLNYLRSCL-------KGEAKELIRGLPLSEENYEEAWELLEERYGNPR 71 (145)
T ss_pred CCCHHHHHHHHHHHh-------cchHHHHHHcccccchhhHHHHHHHHHHhCCch
Confidence 466666654 4554 445566677777788899999999999998764
No 63
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=1.2e+02 Score=35.37 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccce
Q 008572 38 NEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSF 117 (561)
Q Consensus 38 NDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~F 117 (561)
..+-+|=+.+-.+|...+++|.+..-+- |=...+.+.|+|| ||.+|.|++++-.. |+ +.+..++.. .+
T Consensus 211 ~K~s~pltalQ~~L~~~m~~YrDl~y~~-----~s~kn~~e~R~lY-clH~lNHi~K~r~~-IL---~Nn~r~~Sq--k~ 278 (698)
T KOG2340|consen 211 QKKSEPLTALQKELFKIMFNYRDLLYPT-----RSQKNGEEYRSLY-CLHALNHILKTRDL-IL---GNNRRLASQ--KE 278 (698)
T ss_pred ccccCcchHHHHHHHHHHHhhhhhcccc-----ccccccchhhhhH-HHHHHHHHHHHHHH-Hh---cchHhhhhh--hc
Confidence 4677888888888999888876543221 1123477899999 99999999997531 11 111111111 11
Q ss_pred E-EeCCCCCchhh---------HHHHHHHHHHHhh
Q 008572 118 E-YVEPSGKDMGI---------NVRKKAENIVALL 142 (561)
Q Consensus 118 q-YiDe~GKDqGi---------nVReKAkeIleLL 142 (561)
- -.++.=.|||. .-|+-|-+|++||
T Consensus 279 g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~l 313 (698)
T KOG2340|consen 279 GENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLL 313 (698)
T ss_pred CCCCchhhhhcCCCCceEEEEecchHHHHHHHHHH
Confidence 1 11223345653 5699999999888
No 64
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=21.15 E-value=7.6e+02 Score=23.91 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHH-HHHHHHHHHhhc---CCCchh
Q 008572 5 KVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQ-MVMNVLWTRLAE---TGKDWR 80 (561)
Q Consensus 5 ~~~~qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~-~IM~vLwKRL~d---~gKnWR 80 (561)
+.++.++.++++.+..+....-++-.++.+|.-+.. .....+|.+.-...+.+. +|...+.+-+.. ..+.+|
T Consensus 12 ~~~~~~l~~~~~el~~M~~~v~~ml~~~~~al~~~d----~~~~~~i~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d~~ 87 (236)
T PRK11115 12 GQFNAELESIRTQVLTMGGLVEQQLSDAITAMHNQD----AELAKRVIEGDHKVNMMEVAIDEACVRIIAKRQPTASDLR 87 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 457778888888887665444444455566664432 466667776665555544 566666665522 246889
Q ss_pred hhhhHHHHHHHHHHcC
Q 008572 81 YVYKALAVIEYLISHG 96 (561)
Q Consensus 81 ~VYKALtLLEYLLkNG 96 (561)
.+.-.+.++.+|=+=|
T Consensus 88 ~~~~~~~i~~~lERIg 103 (236)
T PRK11115 88 LVMAIIKTIADLERIG 103 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887775444
No 65
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=20.22 E-value=2e+02 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 008572 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (561)
Q Consensus 130 nVReKAkeIleLL~D~ErLreEReKAkkn 158 (561)
++.+-+..|..||+|++..++.++++++.
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 67788899999999999888888777654
No 66
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=20.13 E-value=2.3e+02 Score=33.90 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCHHHHH---HHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 008572 12 REIKREVNLKVLKVPEIEQK---VLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAV 88 (561)
Q Consensus 12 ReikRkVkn~V~nySe~E~K---VREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtL 88 (561)
|-||+-+.+=+.+..+++.. |.+..++ ..+..+|...-....+..+|+..|... .-..++|..++++|..
T Consensus 287 RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~------~~l~~~l~~~L~~i~Dlerll~ri~~~-~~~~~dl~~l~~~l~~ 359 (840)
T TIGR01070 287 RLLKRWLHRPLRDREVLEARQDTVEVLLRH------FFLREGLRPLLKEVGDLERLAARVALG-NARPRDLARLRTSLEQ 359 (840)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHhC------HHHHHHHHHHhccCcCHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44455455555566666554 4455553 246667766666777787877766532 1235788888888876
Q ss_pred HHHH
Q 008572 89 IEYL 92 (561)
Q Consensus 89 LEYL 92 (561)
+..|
T Consensus 360 ~~~l 363 (840)
T TIGR01070 360 LPEL 363 (840)
T ss_pred HHHH
Confidence 5544
Done!