Query 008572
Match_columns 561
No_of_seqs 176 out of 436
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 06:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 7E-59 2.4E-63 437.5 15.5 159 9-167 16-175 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 4.1E-57 1.4E-61 416.0 16.1 148 18-165 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 3.1E-54 1E-58 394.0 15.3 143 23-165 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 3.9E-54 1.3E-58 395.1 1.2 143 10-152 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 3.5E-34 1.2E-38 261.4 11.1 117 29-147 13-133 (140)
6 3zym_A Phosphatidylinositol-bi 99.6 5.3E-16 1.8E-20 156.2 11.0 127 8-138 10-138 (310)
7 3zyl_A Phosphatidylinositol-bi 99.6 6.4E-16 2.2E-20 153.2 10.7 127 8-138 10-138 (271)
8 1hx8_A Synapse-enriched clathr 99.3 1.4E-11 4.7E-16 123.0 10.7 129 9-141 6-147 (299)
9 1juq_A ADP-ribosylation factor 97.8 9.6E-05 3.3E-09 68.9 10.6 114 25-143 11-127 (171)
10 3rru_A TOM1L1 protein; structu 97.8 0.00019 6.4E-09 66.1 11.8 111 26-143 15-129 (152)
11 3zyq_A Hepatocyte growth facto 97.8 0.00017 5.7E-09 69.5 11.5 128 24-161 5-139 (226)
12 1x5b_A Signal transducing adap 97.8 0.00023 7.8E-09 65.8 11.9 127 25-161 13-146 (163)
13 3ldz_A STAM-1, signal transduc 97.7 0.00019 6.4E-09 64.7 10.9 107 25-142 3-112 (140)
14 1elk_A Target of MYB1; superhe 97.7 0.00032 1.1E-08 64.3 12.4 111 26-144 15-130 (157)
15 1mhq_A ADP-ribosylation factor 97.6 0.00056 1.9E-08 62.4 12.0 111 28-143 2-115 (148)
16 3g2s_A C-terminal fragment of 97.6 0.00048 1.6E-08 63.1 10.8 113 24-142 8-124 (149)
17 1dvp_A HRS, hepatocyte growth 97.4 0.00074 2.5E-08 64.3 10.9 108 26-143 4-114 (220)
18 1sz9_A PCF11 protein; RNA poly 82.1 5.6 0.00019 35.9 8.6 105 41-157 23-137 (144)
19 2ijq_A Hypothetical protein; s 77.9 2.7 9.2E-05 39.2 5.2 84 57-149 47-135 (161)
20 4flb_A Regulation of nuclear P 67.8 54 0.0018 28.2 10.8 97 44-154 20-127 (132)
21 3d9j_A RNA-binding protein 16; 67.2 48 0.0016 29.7 10.7 118 26-156 5-136 (145)
22 3fga_B Serine/threonine-protei 43.0 37 0.0013 35.8 6.4 111 26-144 247-366 (403)
23 2qk2_A LP04448P; mini spindles 40.9 51 0.0017 29.9 6.4 65 33-99 21-91 (242)
24 3ut4_A CTHE_2751, putative unc 38.0 1.7E+02 0.0057 26.7 9.1 100 24-141 25-127 (134)
25 1deq_A Fibrinogen (alpha chain 37.7 1.1E+02 0.0038 32.4 8.9 104 38-162 41-157 (390)
26 2db0_A 253AA long hypothetical 36.9 36 0.0012 33.7 4.8 61 25-97 3-64 (253)
27 2pk2_A Cyclin-T1, protein TAT; 35.6 20 0.00069 36.5 3.0 25 129-153 232-257 (358)
28 2bfw_A GLGA glycogen synthase; 31.9 33 0.0011 29.5 3.4 69 85-161 129-198 (200)
29 2b4j_C PC4 and SFRS1 interacti 30.5 38 0.0013 29.5 3.5 66 61-140 8-77 (98)
30 2npp_B PP2A, B subunit, serine 26.9 1.6E+02 0.0056 31.3 8.2 112 26-145 280-400 (449)
31 1z9e_A PC4 and SFRS1 interacti 26.2 39 0.0013 30.7 2.9 66 61-140 8-77 (127)
32 2e8g_A Hypothetical protein PH 24.6 1.3E+02 0.0044 29.9 6.4 67 82-149 13-89 (241)
33 1o5h_A Formiminotetrahydrofola 24.3 87 0.003 30.3 5.1 61 78-140 124-193 (214)
34 2km4_A Regulator of TY1 transp 22.6 2.2E+02 0.0075 25.1 7.1 103 44-155 18-131 (142)
35 2cwy_A Hypothetical protein TT 22.1 2.2E+02 0.0075 23.9 6.6 76 56-143 15-93 (94)
36 3err_A Fusion protein of micro 21.5 2.6E+02 0.009 30.2 8.7 66 43-108 72-140 (536)
37 2klq_A CBD, P105MCM, DNA repli 21.5 84 0.0029 27.5 4.0 69 55-164 7-75 (114)
38 4fu3_A Regulation of nuclear P 20.3 2.1E+02 0.0072 24.4 6.3 97 46-153 21-127 (135)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=7e-59 Score=437.47 Aligned_cols=159 Identities=42% Similarity=0.788 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHh-hcCCCchhhhhhHHH
Q 008572 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALA 87 (561)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL-~d~gKnWR~VYKALt 87 (561)
+.||+++|+|+|+|++||++|++||||||||||||++++|+|||++||++++|.+||++||+|| .+.+++||||||||+
T Consensus 16 ~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~ 95 (176)
T 1xgw_A 16 WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLL 95 (176)
T ss_dssp ------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999996 778999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccc
Q 008572 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167 (561)
Q Consensus 88 LLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~GvSS 167 (561)
||||||+||||+||+|+|+|++.|+.|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+||
T Consensus 96 LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 96 LLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=4.1e-57 Score=415.97 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=133.8
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcC-CCchhhhhhHHHHHHHHHHcC
Q 008572 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAET-GKDWRYVYKALAVIEYLISHG 96 (561)
Q Consensus 18 Vkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~-gKnWR~VYKALtLLEYLLkNG 96 (561)
+.|+|+|||++|++||||||||||||++++|+|||++||++.+|.+||++||+||.++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999999999999997 689999999999999999999
Q ss_pred CHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 008572 97 SERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (561)
Q Consensus 97 SErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~Gv 165 (561)
||+||+|+|+|+++|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=3.1e-54 Score=394.04 Aligned_cols=143 Identities=41% Similarity=0.753 Sum_probs=141.0
Q ss_pred cCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 008572 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (561)
Q Consensus 23 ~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVd 102 (561)
+|||++|++||||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 008572 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (561)
Q Consensus 103 d~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky~Gv 165 (561)
|+|+|++.|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=3.9e-54 Score=395.11 Aligned_cols=143 Identities=41% Similarity=0.773 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHH
Q 008572 10 TVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVI 89 (561)
Q Consensus 10 tvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLL 89 (561)
++++++|+|+|+|++||++|++||||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHH
Q 008572 90 EYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (561)
Q Consensus 90 EYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreER 152 (561)
||||+||||+||+|+|+|++.|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=3.5e-34 Score=261.41 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=111.1
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccCc--hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 008572 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (561)
Q Consensus 29 E~KVREATSNDpWGPs~slM~EIA~aTfn~--~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~ 106 (561)
+.||++||+||||||++.+|+|||++||+. +.|.+||++||+||.++ .|+++||||+||+||++||+++|++++|+
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 468999999999999999999999999986 55899999999999997 68899999999999999999999999999
Q ss_pred hhhhhccccceEEeCC--CCCchhhHHHHHHHHHHHhhcChHH
Q 008572 107 HTFQISSLSSFEYVEP--SGKDMGINVRKKAENIVALLNNKDK 147 (561)
Q Consensus 107 hi~~Ir~L~~FqYiDe--~GKDqGinVReKAkeIleLL~D~Er 147 (561)
|+++|++|++|+|+++ +|+|+|++||++|++|++||.|++.
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999966 8999999999999999999999873
No 6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.64 E-value=5.3e-16 Score=156.18 Aligned_cols=127 Identities=22% Similarity=0.329 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCch-hHHHHHHHHHHHhhcCCCchhhhhhHH
Q 008572 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (561)
Q Consensus 8 ~qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~-dy~~IM~vLwKRL~d~gKnWR~VYKAL 86 (561)
.|++++=-..+|+.|++ +++|+.|+.||+++.|+|..+.+.+|..+|++.. .+..||..|++||. .++|+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~KaL 86 (310)
T 3zym_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (310)
T ss_dssp --CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHHH
Confidence 45666666788898888 9999999999999999999999999999999875 47899999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCC-CCCchhhHHHHHHHHH
Q 008572 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEP-SGKDMGINVRKKAENI 138 (561)
Q Consensus 87 tLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe-~GKDqGinVReKAkeI 138 (561)
+||++||+.|++.|+.+++.|..+ -.|.+|..... .|.|++..||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~~-~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 87 ITTHHLMVYGNERFIQYLASRNTL-FNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSCC-CCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCCe-eecccccCCCCcCcccccHHHHHHHHHH
Confidence 999999999999999999888764 48999853211 4567889999999987
No 7
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.63 E-value=6.4e-16 Score=153.17 Aligned_cols=127 Identities=22% Similarity=0.338 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCch-hHHHHHHHHHHHhhcCCCchhhhhhHH
Q 008572 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (561)
Q Consensus 8 ~qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~~-dy~~IM~vLwKRL~d~gKnWR~VYKAL 86 (561)
.|++.+--..+||.|++ +++|+.|+.||+++.|+|..+.+.+|..+|++.. .+..||..|++||. .++|+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~KaL 86 (271)
T 3zyl_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (271)
T ss_dssp --CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 56777777888998888 9999999999999999999999999999999875 47999999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeC-CCCCchhhHHHHHHHHH
Q 008572 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (561)
Q Consensus 87 tLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiD-e~GKDqGinVReKAkeI 138 (561)
+||++||+.|+++|+.+++.|.. |-.|.+|.... ..|.|++..||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 87 ITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 99999999999999999988875 55889986432 24567778999999877
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.26 E-value=1.4e-11 Score=123.05 Aligned_cols=129 Identities=23% Similarity=0.272 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 008572 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALA 87 (561)
Q Consensus 9 qtvReikRkVkn~V~nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn~-~dy~~IM~vLwKRL~d~gKnWR~VYKALt 87 (561)
|++|+.-..|++-. ..+++|+.|+.||+.+.|+|..+.+.+|..+|++. .....++..|++|+. .++|.+++|||+
T Consensus 6 ~~~~~~~~a~k~~~-~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~--~~~w~va~K~Li 82 (299)
T 1hx8_A 6 QTINDRLLAARHSL-AGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ--NANWVVVYKSLI 82 (299)
T ss_dssp -----------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhcc--CCcHHHHHHHHH
Confidence 45555444444322 24699999999999999999999999999999887 446789999999964 459999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhccccceEEeC------------CCCCchhhHHHHHHHHHHHh
Q 008572 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE------------PSGKDMGINVRKKAENIVAL 141 (561)
Q Consensus 88 LLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiD------------e~GKDqGinVReKAkeIleL 141 (561)
||++||+.|++.++.++..+.. |-.|.+|.-.. ..|.|++..||.-|+-|.+-
T Consensus 83 vlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r 147 (299)
T 1hx8_A 83 TTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK 147 (299)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999976533 44566772111 12346888999999866543
No 9
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.82 E-value=9.6e-05 Score=68.86 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
.++++.+|.+||+...-.|.-.+..+|++.-. +...-.+.+..|.|||... +-...+-||+|||.|++|+..+|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 57899999999997666777777888887753 3456778999999999864 77888999999999999998887766
Q ss_pred HHhh--hhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 104 IIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 104 ~R~h--i~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
+-.. +..|..|-.=+|. |...-..||+|+.+|+.-..
T Consensus 89 vas~~Fl~eL~kl~~~k~~---~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYL---GDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCC---CTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccccC---CCCCCHHHHHHHHHHHHHHH
Confidence 6332 3322222111121 22244699999999887554
No 10
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.78 E-value=0.00019 Score=66.10 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=80.4
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
|+++..|..||+..--.|.-...-||++.-. +...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7899999999997666666667888887643 34567789999999998 445777777899999999999999988887
Q ss_pred H--hhhh-hhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 105 I--EHTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 105 R--~hi~-~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
- +-+. .|..|- .+.. ..-..||+|+.+|+.-..
T Consensus 94 ask~Fl~e~L~kl~-----~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKLL-----NPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGGG-----SGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHh-----cCCC-CCcHHHHHHHHHHHHHHH
Confidence 4 3332 122221 1110 123479999988887654
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.76 E-value=0.00017 Score=69.49 Aligned_cols=128 Identities=15% Similarity=0.212 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 008572 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (561)
Q Consensus 24 nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVd 102 (561)
.-+++|..|.+||+...-.|.-.+..+|++.-.. ...-.+.|..|.|||.. ++-..++-||+|||.|++|+-.++-.
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4578999999999987777888888888887644 34467899999999984 47778999999999999998888776
Q ss_pred HH--HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhh----cChHHHHHHHHHHHHhhcc
Q 008572 103 DI--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL----NNKDKIQEVRNKASANREK 161 (561)
Q Consensus 103 d~--R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL----~D~ErLreEReKAkknR~K 161 (561)
++ ++-+..|..|- . ......||+|+.+|+.-. .++..|...+.--+.+|.+
T Consensus 83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVE 139 (226)
T ss_dssp HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Confidence 65 22232232221 1 112358999999988754 3444555555555555543
No 12
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.75 E-value=0.00023 Score=65.80 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
-++++.+|.+||+...-.|.-.+..+|++.-. +...-.+.+..|.|||..+ +-...+-||+|||.|++|+-.+|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46789999999997666777777778887643 3456778999999999864 45567779999999999998887755
Q ss_pred HHh--hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc----ChHHHHHHHHHHHHhhcc
Q 008572 104 IIE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN----NKDKIQEVRNKASANREK 161 (561)
Q Consensus 104 ~R~--hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~----D~ErLreEReKAkknR~K 161 (561)
+-. -+..|..|- ... .-..||+|+.+++.... +...|..-|.--+.+|.+
T Consensus 91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Confidence 522 222221111 111 12479999999887543 233344445544555543
No 13
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.75 E-value=0.00019 Score=64.71 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=78.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd 103 (561)
-++++.+|.+||+...-.|.-...-+|++.-.. ...-.+.|..|.|||..+ +-...+-||+|||.|++|+-.++-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 378899999999987777777788888888654 345677999999999864 66778999999999999998887755
Q ss_pred H--HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 008572 104 I--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 104 ~--R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL 142 (561)
+ ++-+..|..|-. . .-..||+|+.+++.-.
T Consensus 81 vas~~Fl~el~~l~~-----~----~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN-----K----GHPKVCEKLKALMVEW 112 (140)
T ss_dssp HSSHHHHHHHHHHHH-----H----SCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhc-----c----CCHHHHHHHHHHHHHH
Confidence 5 333332222211 0 1248999998888654
No 14
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.73 E-value=0.00032 Score=64.30 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=80.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
++++.+|.+||+...-.|.-.+.-+|++.-. +...-.+.+..|.|||..+ ++...++-||+|||.|++|+-.++-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4899999999997766777777888887643 3456788999999999853 4777789999999999999988887766
Q ss_pred Hh--hhhh--hccccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 008572 105 IE--HTFQ--ISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (561)
Q Consensus 105 R~--hi~~--Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D 144 (561)
-. -+.. ++.+ .+.+ +.-..||+|+.+++.-..+
T Consensus 94 a~~~fl~e~Lvk~~------~~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTI------LPKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHH------STTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh------ccCC-CCcHHHHHHHHHHHHHHHH
Confidence 32 2222 2222 1111 1235899999888876543
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.61 E-value=0.00056 Score=62.38 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcc-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH--
Q 008572 28 IEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI-- 104 (561)
Q Consensus 28 ~E~KVREATSNDpWGPs~slM~EIA~aTf-n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~-- 104 (561)
++..|.+||+...-.|.-.+..+|++.-. +...-.+.|..|.|||.. ++-..++-||+|||.|++|+-.+|-.++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 57899999997666777777888887753 345677899999999985 4788889999999999999999887776
Q ss_pred HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 105 R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
++-+..|..|-.=+| .|...-..||+|+.+|+.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 333333322211012 122234699999988887553
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.55 E-value=0.00048 Score=63.11 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 008572 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (561)
Q Consensus 24 nySe~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVd 102 (561)
.-++++.+|.+||+...-.|.-...-+|++.-.. ...-.+.|..|.|||.. ++-+..+-||+|||.|++|+-.+|-.
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3478999999999988778888899999988643 34567799999999985 48888999999999999999999876
Q ss_pred HHH--hhhhhhcc-ccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 008572 103 DII--EHTFQISS-LSSFEYVEPSGKDMGINVRKKAENIVALL 142 (561)
Q Consensus 103 d~R--~hi~~Ir~-L~~FqYiDe~GKDqGinVReKAkeIleLL 142 (561)
++- +-+..|.. +.. +| .|...-..||+|+.+|+.-.
T Consensus 86 eias~~Fl~eL~kl~~~-k~---~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSP-KY---LGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHTSHHHHHHHHHHHCT-TT---TGGGSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcc-cc---cCCCCCHHHHHHHHHHHHHH
Confidence 652 22222221 111 11 12223468999999888655
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.43 E-value=0.00074 Score=64.27 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=78.1
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aTfn-~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~ 104 (561)
+.++.+|.+||+...-.|.-.++-||++.-.. ...-.+.+..|.|||.. ++-..++-||+|||.|++|+-.++-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 56899999999976667777788888877543 34667899999999986 4778899999999999999877776654
Q ss_pred Hh--hhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 008572 105 IE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (561)
Q Consensus 105 R~--hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~ 143 (561)
-. -+..|..| +.. ..-..||+|+.+|++...
T Consensus 82 a~~~fl~~l~~l-----~~~---~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKENCEMFSSF-----LES---TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHHHHHHHHHH-----HHH---CSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-----hcC---CCcHHHHHHHHHHHHHHH
Confidence 22 22222222 110 123589999888876554
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=82.12 E-value=5.6 Score=35.90 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEe
Q 008572 41 WGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYV 120 (561)
Q Consensus 41 WGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYi 120 (561)
.+|.-..|..+|. .+...+..|+++|.++|..- .-.+-+=+|-|++-+++|....++..+-.++..+=. .-|+.+
T Consensus 23 Sk~~I~~LT~~a~--~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~-~~~~~~ 97 (144)
T 1sz9_A 23 SRPIITTLTKLAE--ENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK-RTYLLV 97 (144)
T ss_dssp CHHHHHHHHHHHH--HTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH-HHHHTS
T ss_pred cHhHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHhC
Confidence 3444444444544 46778999999999999864 345667789999999999777777777766553310 122212
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcCh----------HHHHHHHHHHHH
Q 008572 121 EPSGKDMGINVRKKAENIVALLNNK----------DKIQEVRNKASA 157 (561)
Q Consensus 121 De~GKDqGinVReKAkeIleLL~D~----------ErLreEReKAkk 157 (561)
| ..+|.|..+|+.+=... +.|+.-|+.-.+
T Consensus 98 d-------~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 98 D-------NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp C-------HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 2 48999999999988766 777777765543
No 19
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=77.85 E-value=2.7 Score=39.24 Aligned_cols=84 Identities=6% Similarity=0.118 Sum_probs=56.4
Q ss_pred CchhHHHHHHHHHHHhhcCCCchhhhhhHHHH-H---HHHHHcCCHh-HHHHHHhhhhhhccccceEEeCCCCCchhhHH
Q 008572 57 KFSECQMVMNVLWTRLAETGKDWRYVYKALAV-I---EYLISHGSER-AVDDIIEHTFQISSLSSFEYVEPSGKDMGINV 131 (561)
Q Consensus 57 n~~dy~~IM~vLwKRL~d~gKnWR~VYKALtL-L---EYLLkNGSEr-vVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinV 131 (561)
.+-+|.+|++-+|++......+ |.+|++|+. | -|-+++|..+ .+.-++.-+..|+.+.. ...|++|
T Consensus 47 ~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~--------~~~GIDv 117 (161)
T 2ijq_A 47 EFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN--------DYYGVDL 117 (161)
T ss_dssp CHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT--------TGGGBCH
T ss_pred CchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--------ccCCcCH
Confidence 4667778999999987655323 788888877 2 3446777765 44444555555554322 3478888
Q ss_pred HHHHHHHHHhhcChHHHH
Q 008572 132 RKKAENIVALLNNKDKIQ 149 (561)
Q Consensus 132 ReKAkeIleLL~D~ErLr 149 (561)
..-...|-++|.|++.+.
T Consensus 118 ~~L~~~~~~~l~dp~~~~ 135 (161)
T 2ijq_A 118 LDVRTTVTNALSDPSALH 135 (161)
T ss_dssp HHHHHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHhhCCccCC
Confidence 888888888888887543
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=67.83 E-value=54 Score=28.22 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC----HhHHHHHHhhhhhhccccceE
Q 008572 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTFQISSLSSFE 118 (561)
Q Consensus 44 s~slM~EIA~aT-fn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGS----ErvVdd~R~hi~~Ir~L~~Fq 118 (561)
+..-.+.++... ++...+..|+++|.++|.....+ +-+-.|-|++-+|+|.. ..++..+...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~--~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP--HRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 455566666665 56788899999999999876443 44577899999999863 33445454444322 22
Q ss_pred Ee-CCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHHH
Q 008572 119 YV-EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNK 154 (561)
Q Consensus 119 Yi-De~GKDqGinVReKAkeIleLL~-----D~ErLreEReK 154 (561)
++ ++ .+|+|..+|+++-+ +++.|++-|+.
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 22 32 45788888888765 46777766653
No 21
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=67.21 E-value=48 Score=29.68 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=79.4
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCH------
Q 008572 26 PEIEQKVLDATDNEPWGPHGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE------ 98 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~slM~EIA~aT-fn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSE------ 98 (561)
.+.|.++.+-+...|- -+...++.|..++ .+...+..|+..|.++|..-. -++-+=.|-|++=+++|.-.
T Consensus 5 ~~f~~~L~~L~~~k~~-~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~ 81 (145)
T 3d9j_A 5 KTFNSELYSLNDYKPP-ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEK 81 (145)
T ss_dssp HHHHHHHHGGGGSCSS-CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCcc
Confidence 3455666665555432 5666676666655 567788999999999998763 34668899999999999665
Q ss_pred -hHHHHHHhhhhh-hccccceEEeCCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHHHHH
Q 008572 99 -RAVDDIIEHTFQ-ISSLSSFEYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKAS 156 (561)
Q Consensus 99 -rvVdd~R~hi~~-Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~-----D~ErLreEReKAk 156 (561)
.++..+..++.. +. .-|. ....+|.|.++|+++=+ .++.|+.-|....
T Consensus 82 ~~f~~~F~~~L~~~f~--~~~~--------~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 82 DVFAPRFSNNIISTFQ--NLYR--------CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp CSHHHHHHHHHHHHHH--HHTS--------SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--HHHh--------CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 466666555442 22 1121 12578899999998864 6677777776654
No 22
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=43.03 E-value=37 Score=35.84 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=65.7
Q ss_pred CHHHHHHHHhhcCCCCCCCHHH------HHHHHHHccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcCC
Q 008572 26 PEIEQKVLDATDNEPWGPHGTA------LAEIAQATKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHGS 97 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~sl------M~EIA~aTfn~~dy~~IM~vLwKRL~d--~gKnWR~VYKALtLLEYLLkNGS 97 (561)
+-++.-|+.-...=|+..+.+. +.+|.+.. +..+|..||..|.+||.. ...+.+..-.||.+. ..
T Consensus 247 ~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------nN 319 (403)
T 3fga_B 247 TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------NN 319 (403)
T ss_dssp GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------GC
T ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------cc
Confidence 3344455555544444444443 23444434 778999999999999974 345888888888776 23
Q ss_pred HhHHHHHHhhhhhhccccceEEeCCC-CCchhhHHHHHHHHHHHhhcC
Q 008572 98 ERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNN 144 (561)
Q Consensus 98 ErvVdd~R~hi~~Ir~L~~FqYiDe~-GKDqGinVReKAkeIleLL~D 144 (561)
+.++.-+.+|...|-.+- |.-+..+ -.-|-..||..|.+++.+|.|
T Consensus 320 e~i~~li~~n~~~IlPii-~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 320 EYIMSLISDNAAKILPIM-FPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHTTHHHHHHHH-HHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 445544455544222110 0000001 123788999999999999954
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=40.91 E-value=51 Score=29.92 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHc-----cCchhHHHHHHHHHHHhh-cCCCchhhhhhHHHHHHHHHHcCCHh
Q 008572 33 LDATDNEPWGPHGTALAEIAQAT-----KKFSECQMVMNVLWTRLA-ETGKDWRYVYKALAVIEYLISHGSER 99 (561)
Q Consensus 33 REATSNDpWGPs~slM~EIA~aT-----fn~~dy~~IM~vLwKRL~-d~gKnWR~VYKALtLLEYLLkNGSEr 99 (561)
.+..++..|----..+..|.... ....+|.+|+..|.++|. +. +.+....+|..|..|.+...+.
T Consensus 21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhh
Confidence 34445566654333444443332 123568899999999995 64 7888889999999999765543
No 24
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=37.99 E-value=1.7e+02 Score=26.70 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=70.4
Q ss_pred CCCHHHHHH---HHhhcCCCCCCCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhH
Q 008572 24 KVPEIEQKV---LDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERA 100 (561)
Q Consensus 24 nySe~E~KV---REATSNDpWGPs~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErv 100 (561)
+|.+++-.+ .+=.-+=+|.+-..+..-++.. . ..++..|++-|......|.. -||+||+.|=+.+.
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~y-----wil~~lv~~~~~~~ 93 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWKY-----WVIKLMIPYLIYPN 93 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHHH-----HHHHHHGGGCCHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHHH-----HHHHHHHHcCCHHH
Confidence 444444433 3445577898877766666642 1 36777777777777767753 58999999999999
Q ss_pred HHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHh
Q 008572 101 VDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (561)
Q Consensus 101 Vdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleL 141 (561)
+..++.-+..|-. .+...+.-..|.+-|++|++-
T Consensus 94 ~~~l~~eL~rl~~-------~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 94 KQLVKSELERLSS-------LEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHHHHHHHHT-------CCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHHHH
Confidence 8888888776653 445556777888999988864
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.68 E-value=1.1e+02 Score=32.37 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCCCCC---CHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc------CCHh----HHHHH
Q 008572 38 NEPWGP---HGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH------GSER----AVDDI 104 (561)
Q Consensus 38 NDpWGP---s~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkN------GSEr----vVdd~ 104 (561)
++.||+ ++=.|+.+..-+- .++..-|+.|..+|.+..+....+|--.+.|--+|+. ..+. +-+++
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~e--r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVD--QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred hhhccCCCCccchHHHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 566764 6666766554442 5677777888888887666666666555555444442 3333 33456
Q ss_pred HhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 008572 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (561)
Q Consensus 105 R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~D~ErLreEReKAkknR~Ky 162 (561)
+.||..|+. +|+....+| .+|+ .-|++.|.+.+++-.+|
T Consensus 119 e~~i~~lk~----------------~V~~q~~~i-r~Lq--~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILRR----------------KVIEQVQRI-NLLQ--KNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHH----------------HHHHHhHHH-HHHH--HHHHHHHHHHHHHHHHH
Confidence 666655542 444444422 2222 34555666666655554
No 26
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=36.91 E-value=36 Score=33.73 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=42.2
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHH-HHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC
Q 008572 25 VPEIEQKVLDATDNEPWGPHGTALAE-IAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS 97 (561)
Q Consensus 25 ySe~E~KVREATSNDpWGPs~slM~E-IA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGS 97 (561)
+.+-|..||||.- ++.+++| |++++|+. +|++.|.+-|.+. -|...-.||.||--+++.=+
T Consensus 3 me~~e~d~reala------tge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~ 64 (253)
T 2db0_A 3 MEEEEFDIREALA------NGEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTRE 64 (253)
T ss_dssp ------CHHHHHH------TTCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCG
T ss_pred chHhhhhHHHHHh------hhhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhH
Confidence 4567888999986 4566776 67888984 5667777777776 89999999999987766544
No 27
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=35.58 E-value=20 Score=36.48 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHHH
Q 008572 129 INVRKKAENIVALLNN-KDKIQEVRN 153 (561)
Q Consensus 129 inVReKAkeIleLL~D-~ErLreERe 153 (561)
..|++.+++|++++.. +++|+.-+.
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchhc
Confidence 4799999999999874 345555443
No 28
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=31.91 E-value=33 Score=29.51 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhcc
Q 008572 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN-NKDKIQEVRNKASANREK 161 (561)
Q Consensus 85 ALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReKAkeIleLL~-D~ErLreEReKAkknR~K 161 (561)
.+.++|+|.. |.+=|+.+.-....+| .-..--+++.. ++..-|+.|..||+ |++.+++.++++++.-.+
T Consensus 129 ~~~~~Ea~a~-G~PvI~~~~~~~~e~~-~~~~g~~~~~~------~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 129 GLVALEAMCL-GAIPIASAVGGLRDII-TNETGILVKAG------DPGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp CHHHHHHHHT-TCEEEEESCHHHHHHC-CTTTCEEECTT------CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHC-CCCEEEeCCCChHHHc-CCCceEEecCC------CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 5788998875 4443333322223333 21121222321 56788999999999 999999988888775433
No 29
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=30.52 E-value=38 Score=29.47 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc-CCHhHHHHHHhhh---hhhccccceEEeCCCCCchhhHHHHHHH
Q 008572 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHT---FQISSLSSFEYVEPSGKDMGINVRKKAE 136 (561)
Q Consensus 61 y~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkN-GSErvVdd~R~hi---~~Ir~L~~FqYiDe~GKDqGinVReKAk 136 (561)
+.++-..|...|.-. --.|.|||.+||-|-.= .... -++.|- +.|+.|++|.- ...||++|.
T Consensus 8 l~~L~~~ik~~L~~~---~~Dv~kcl~~L~~l~~l~~T~~---mL~rnpe~V~t~kklRry~g--------~q~Ir~kA~ 73 (98)
T 2b4j_C 8 LQRIHAEIKNSLKID---NLDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKV--------SQVIMEKST 73 (98)
T ss_dssp HHHHHHHHHHHTCTT---SCCHHHHHHHHHHHHTCCCCHH---HHHTTHHHHHHHHHHTTCTT--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---CCCHHHHHHHHHHHhcccccHH---HHhhChHHHHHHHHHHHHhc--------hHHHHHHHH
Confidence 334444444444322 22578888888877543 2221 133333 36666777732 168899998
Q ss_pred HHHH
Q 008572 137 NIVA 140 (561)
Q Consensus 137 eIle 140 (561)
.|.+
T Consensus 74 ~iY~ 77 (98)
T 2b4j_C 74 MLYN 77 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 30
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=26.94 E-value=1.6e+02 Score=31.34 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=65.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHH------HHHHHHHccCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcCC
Q 008572 26 PEIEQKVLDATDNEPWGPHGTA------LAEIAQATKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHGS 97 (561)
Q Consensus 26 Se~E~KVREATSNDpWGPs~sl------M~EIA~aTfn~~dy~~IM~vLwKRL~d--~gKnWR~VYKALtLLEYLLkNGS 97 (561)
+-++.-|+.-...=|+.-+.+. +.+|.+.+ ...+|..||..|.+||.. ...+.+..-.||.++. .
T Consensus 280 ~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~-~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~------N 352 (449)
T 2npp_B 280 TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------N 352 (449)
T ss_dssp GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------C
T ss_pred HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC------C
Confidence 3344455555555555555553 33444444 778999999999999975 3468888888887762 2
Q ss_pred HhHHHHHHhhhhhhccccceEEeCCC-CCchhhHHHHHHHHHHHhhcCh
Q 008572 98 ERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNNK 145 (561)
Q Consensus 98 ErvVdd~R~hi~~Ir~L~~FqYiDe~-GKDqGinVReKAkeIleLL~D~ 145 (561)
+.++.-+.+|...|-.+ =|.-+..+ -.-|-..||..|.+++.+|.+-
T Consensus 353 ~~i~~li~~n~~~IlPi-i~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 353 EYIMSLISDNAAKILPI-MFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHTTHHHHHHH-HHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhchhhhHHh-hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 23333334343322110 00000111 1237789999999999988653
No 31
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=26.18 E-value=39 Score=30.73 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc-CCHhHHHHHHhhh---hhhccccceEEeCCCCCchhhHHHHHHH
Q 008572 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHT---FQISSLSSFEYVEPSGKDMGINVRKKAE 136 (561)
Q Consensus 61 y~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkN-GSErvVdd~R~hi---~~Ir~L~~FqYiDe~GKDqGinVReKAk 136 (561)
+..+-..|...|.-. --.|.|||.+||-|-.= -... -++.|- +.|+.|++|.- + ..||++|.
T Consensus 8 L~~L~~~Ik~~L~v~---~~Dv~kCl~~Leel~~l~vT~~---mL~Rnpe~V~TlkklRrY~g-n-------q~Ir~kA~ 73 (127)
T 1z9e_A 8 LQRIHAEIKNSLKID---NLDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFKV-S-------QVIMEKST 73 (127)
T ss_dssp HHHHHHHHHHHTCGG---GCCHHHHHHHHHHHHHSCCCHH---HHGGGHHHHHHHHHHTTCTT-C-------SSHHHHHH
T ss_pred HHHHHHHHHHHHccC---CCCHHHHHHHHHHHccccccHH---HHhhChHHHHHHHHHHHHhc-c-------HHHHHHHH
Confidence 344444444444422 22578899888887654 2222 234443 36666677732 1 58999998
Q ss_pred HHHH
Q 008572 137 NIVA 140 (561)
Q Consensus 137 eIle 140 (561)
.|..
T Consensus 74 ~iY~ 77 (127)
T 1z9e_A 74 MLYN 77 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 32
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=24.60 E-value=1.3e+02 Score=29.88 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHcCC-------HhHHHHHHhhhhhhccccceEEeCCC---CCchhhHHHHHHHHHHHhhcChHHHH
Q 008572 82 VYKALAVIEYLISHGS-------ERAVDDIIEHTFQISSLSSFEYVEPS---GKDMGINVRKKAENIVALLNNKDKIQ 149 (561)
Q Consensus 82 VYKALtLLEYLLkNGS-------ErvVdd~R~hi~~Ir~L~~FqYiDe~---GKDqGinVReKAkeIleLL~D~ErLr 149 (561)
.-||.-+|+-.+.++. -+++..+++-...|+.| .|.|.+++ +..+=..|.++++.|++.|.-+.-|+
T Consensus 13 ae~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~iq~l-~ysyl~~~~L~~~~~~~~~~~~~~~i~~~l~g~~Wl~ 89 (241)
T 2e8g_A 13 AEKSVELFIRTIEGAKFRGQWDKKRSIQLAKEMIPDIQAL-RYSYIDPEELVDTPQMKDLKEKAKGIIEALGGEDWHH 89 (241)
T ss_dssp HHHHHHHHHHHHHTSCCCTTSCHHHHHHHHHHHHHHHHHH-HTTCCCHHHHTTSHHHHHHHHHHHHHHHHHTSTTHHH
T ss_pred HHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhee-EEeccCHHHHhcChhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555555555554 34566666666666654 36666542 33445699999999999994443333
No 33
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=24.27 E-value=87 Score=30.34 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=39.3
Q ss_pred chhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhcc---------ccceEEeCCCCCchhhHHHHHHHHHHH
Q 008572 78 DWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISS---------LSSFEYVEPSGKDMGINVRKKAENIVA 140 (561)
Q Consensus 78 nWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~---------L~~FqYiDe~GKDqGinVReKAkeIle 140 (561)
--|.+++.|-|++.|+.+|...+|.|+.--...++. .-+...+.+ .+.-..+|+++.+|++
T Consensus 124 ia~~~~~~l~l~~~la~~GN~~aiSD~gvaa~l~~aAi~gA~lNV~INL~~ikD--e~~~~~~~~e~~~l~~ 193 (214)
T 1o5h_A 124 VIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEISD--ETFRKNMLEELEEQEA 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHHHHH
Confidence 456778899999999999999999886544433221 011222211 2345578888888777
No 34
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=22.62 E-value=2.2e+02 Score=25.12 Aligned_cols=103 Identities=9% Similarity=0.150 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC----HhHHHHHHhhhh-hhccccce
Q 008572 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTF-QISSLSSF 117 (561)
Q Consensus 44 s~slM~EIA~aT-fn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGS----ErvVdd~R~hi~-~Ir~L~~F 117 (561)
+..-++.++... ++......|++++.++|......-++-+--|-|+.-+|.|.. ..++..+...+. ++..+ |
T Consensus 18 sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~--~ 95 (142)
T 2km4_A 18 SQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRI--N 95 (142)
T ss_dssp CHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH--H
Confidence 555567777776 567788899999999998864444555566777777776543 346666665554 22221 1
Q ss_pred EEeCCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHHHH
Q 008572 118 EYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKA 155 (561)
Q Consensus 118 qYiDe~GKDqGinVReKAkeIleLL~-----D~ErLreEReKA 155 (561)
... ...+|+|..+|+++-+ +++.|.+-|...
T Consensus 96 ~~~-------~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l 131 (142)
T 2km4_A 96 QEF-------PRDLKKKLSRVVNILKERNIFSKQVVNDIERSL 131 (142)
T ss_dssp HHS-------CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HcC-------CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 111 2468899999998864 455666555544
No 35
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.06 E-value=2.2e+02 Score=23.89 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=48.2
Q ss_pred cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHH---HHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHH
Q 008572 56 KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVI---EYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVR 132 (561)
Q Consensus 56 fn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLL---EYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVR 132 (561)
-++-+|.+|.+.+|+...+ .=|..|++|+.| -|-+++|.. ...-++.-+..|+.+.. ...|++|.
T Consensus 15 g~~~eaHEvlE~~W~~~~~---~~~~~~qGLIq~Ava~~h~~~gn~-a~~ll~~a~~~L~~~~~--------~~~gidv~ 82 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATG---EERRLLQGVILLAAALHQRRLGRP-GLRNLRKAEARLEGLPC--------PLMGLDWR 82 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTTCCS--------SBTTBCHH
T ss_pred CChHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHhCCC--------ccCCcCHH
Confidence 3566778899999998832 446677776654 344457887 55555665656654321 14677777
Q ss_pred HHHHHHHHhhc
Q 008572 133 KKAENIVALLN 143 (561)
Q Consensus 133 eKAkeIleLL~ 143 (561)
.-...|-++|.
T Consensus 83 ~L~~~~~~~l~ 93 (94)
T 2cwy_A 83 SLLQEARRRLG 93 (94)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 76666666653
No 36
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=21.51 E-value=2.6e+02 Score=30.21 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHccCchhHHHHHHHHHHHhhcCCCchhhhhhHH---HHHHHHHHcCCHhHHHHHHhhh
Q 008572 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL---AVIEYLISHGSERAVDDIIEHT 108 (561)
Q Consensus 43 Ps~slM~EIA~aTfn~~dy~~IM~vLwKRL~d~gKnWR~VYKAL---tLLEYLLkNGSErvVdd~R~hi 108 (561)
.....+.||-....-+.....||+.+.--|..+...|..+.|-| ..|+-|+..-.+.+-+.++..+
T Consensus 72 L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~~~~W~~ak~~L~~~~Fl~~L~~fdkd~I~~~~~~~l 140 (536)
T 3err_A 72 IKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKM 140 (536)
T ss_dssp CCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCCCHHHHhhccCcHHHHHHHHhcCcccCCHHHHHHH
Confidence 56778888887776677788899988766666667899877754 3566666554444444444333
No 37
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=21.47 E-value=84 Score=27.46 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=50.1
Q ss_pred ccCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhccccceEEeCCCCCchhhHHHHH
Q 008572 55 TKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKK 134 (561)
Q Consensus 55 Tfn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGSErvVdd~R~hi~~Ir~L~~FqYiDe~GKDqGinVReK 134 (561)
+-.++.|..|+++|-.||.... ... +..|..+..-|.==
T Consensus 7 ~Is~d~Y~~i~n~lV~~ir~~E--------------------------------~~~---------~~~G~~~~eLv~WY 45 (114)
T 2klq_A 7 RLGFSEYSRISNLIVLHLRKVE--------------------------------EEE---------DESALKRSELVNWY 45 (114)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH--------------------------------HHT---------SSSCBCHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHh--------------------------------hhc---------ccCCCCHHHHHHHH
Confidence 3467889999999877775531 000 33577777777777
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHhhccccc
Q 008572 135 AENIVALLNNKDKIQEVRNKASANREKYFG 164 (561)
Q Consensus 135 AkeIleLL~D~ErLreEReKAkknR~Ky~G 164 (561)
.+++-+-|.+++.|.+||+.+++.=.|++-
T Consensus 46 Leq~e~~i~seeel~~e~~lv~kVI~rLI~ 75 (114)
T 2klq_A 46 LKEIESEIDSEEELINKKRIIEKVIHRLTH 75 (114)
T ss_dssp HHHHTTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 777777889999999999999887666554
No 38
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.27 E-value=2.1e+02 Score=24.41 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHHHHHHHHc-cCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC---HhHHHHHHhhhhhh-ccccceEEe
Q 008572 46 TALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS---ERAVDDIIEHTFQI-SSLSSFEYV 120 (561)
Q Consensus 46 slM~EIA~aT-fn~~dy~~IM~vLwKRL~d~gKnWR~VYKALtLLEYLLkNGS---ErvVdd~R~hi~~I-r~L~~FqYi 120 (561)
.-++.++... ++...+..|+.+|.++|.....+ +-+-.|-|++-+|+|.. ..++..+..++..| ..+ |.-.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~--~~~~ 96 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHV--AREA 96 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHcC
Confidence 3444555554 45677889999999999876544 34568888999988753 23555555554322 111 1111
Q ss_pred CCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHH
Q 008572 121 EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRN 153 (561)
Q Consensus 121 De~GKDqGinVReKAkeIleLL~-----D~ErLreERe 153 (561)
+ ..+|+|..+|+++-+ +++.|++-|.
T Consensus 97 ~-------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 97 D-------EGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp H-------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 2 246778888888765 3555555554
Done!