BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008573
(561 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0E9|BRD8_HUMAN Bromodomain-containing protein 8 OS=Homo sapiens GN=BRD8 PE=1 SV=2
Length = 1235
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 192 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFR 251
L+ MI SHR SS F + + +++ YK +V++ +DL +++ L +G Q F R
Sbjct: 1112 LLPVWKMIASHRFSSPFLKPVSERQAPGYKDVVKRPMDLTSLKRNLSKGRIRTMAQ-FLR 1170
Query: 252 DLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEM 285
DL+L+F N V++ Y A E+R V++++
Sbjct: 1171 DLMLMFQNAVMYNDSDHHVYHMAVEMRQEVLEQI 1204
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 202 HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 261
HR ++ F + + + Y +V++ +DL TI+ ++ GL + +F RD++L+F N V
Sbjct: 726 HRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRST-AEFQRDIMLMFQNAV 784
Query: 262 IFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 292
++ Y A E++ V++++ L Q
Sbjct: 785 MYNSSDHDVYHMAVEMQRDVLEQIQQFLATQ 815
>sp|Q8R3B7|BRD8_MOUSE Bromodomain-containing protein 8 OS=Mus musculus GN=Brd8 PE=1 SV=2
Length = 951
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 202 HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 261
HR ++ F + + + Y +V++ +DL TI+ ++ GL + +F RD++L+F N V
Sbjct: 799 HRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRST-AEFQRDIMLMFQNAV 857
Query: 262 IFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 292
++ Y A E++ V++++ L Q
Sbjct: 858 MYNSSDHDVYHMAVEMQRDVLEQIQQFLATQ 888
>sp|A8DZJ1|BAZ1B_XENLA Tyrosine-protein kinase BAZ1B OS=Xenopus laevis GN=baz1b PE=2 SV=2
Length = 1441
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 195 FLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLL 254
L + +R S F + E E Y K+V +D +T+QS+ G Y Q+F DL
Sbjct: 1316 ILAKLIKYRFSWPFREPFNADEIEDYTKVVTTPMDFQTMQSKCSCGSYQT-VQEFLNDLK 1374
Query: 255 LLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQQPIAVTKPKPKPKPEHHR--QQ 312
L+F N +++ S + + ++ D+L K P + + HR Q
Sbjct: 1375 LVFGNTELYYEAGSSQLSCLEKTEQCA----RDLLGKHLPAHTYQRR-------HRKHQS 1423
Query: 313 PQPPPASLSKPNRG 326
P+P P + + P RG
Sbjct: 1424 PEPEPET-ANPGRG 1436
>sp|Q6JHU9|CBP_RAT CREB-binding protein OS=Rattus norvegicus GN=Crebbp PE=2 SV=1
Length = 2442
Score = 40.4 bits (93), Expect = 0.035, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 40/257 (15%)
Query: 36 STTQKAETTNKKQNDDAEGEEEKEQKMKPEPDVENDPVQNRTESGPDREDRDWSSNGKLN 95
S+ AET++++ D E K + D E DP +++ E P E +
Sbjct: 977 SSVTSAETSSQQPGPDVPMLEMKTEVQTD--DAEPDPAESKGE--PRSE--------MME 1024
Query: 96 ENGNGTGNVKEETDEDNDKTASEGKVESVKNKTSAVGGLSESNELWDESKREGKQSSDVQ 155
E+ G+ VKEETD K+ +VE K + E N S++
Sbjct: 1025 EDLQGSSQVKEETDTTEQKSEPM-EVEEKKPEVKVEAKEEEEN------------SANGT 1071
Query: 156 SSASLSRNKRRRSGEEPYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQ 215
+S S S ++ R+ +P EE+ A L + R S F + + Q
Sbjct: 1072 ASQSTSPSQPRKKIFKP--EELRQALMPTLE----------ALYRQDPESLPFRQPVDPQ 1119
Query: 216 --ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 273
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y
Sbjct: 1120 LLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKF 1178
Query: 274 AQELRTLVIKEMTDMLR 290
+L + +E+ +++
Sbjct: 1179 CSKLAEVFEQEIDPVMQ 1195
>sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=3
Length = 2441
Score = 40.0 bits (92), Expect = 0.047, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 40/257 (15%)
Query: 36 STTQKAETTNKKQNDDAEGEEEKEQKMKPEPDVENDPVQNRTESGPDREDRDWSSNGKLN 95
S+ AET++++ D E K + D E +P +++ E P E +
Sbjct: 977 SSVTSAETSSQQPGPDVPMLEMKTEVQTD--DAEPEPTESKGE--PRSE--------MME 1024
Query: 96 ENGNGTGNVKEETDEDNDKTASEGKVESVKNKTSAVGGLSESNELWDESKREGKQSSDVQ 155
E+ G+ VKEETD K+ +VE K + E N SS+
Sbjct: 1025 EDLQGSSQVKEETDTTEQKSEPM-EVEEKKPEVKVEAKEEEEN------------SSNDT 1071
Query: 156 SSASLSRNKRRRSGEEPYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQ 215
+S S S ++ R+ +P EE+ A L + R S F + + Q
Sbjct: 1072 ASQSTSPSQPRKKIFKP--EELRQALMPTLE----------ALYRQDPESLPFRQPVDPQ 1119
Query: 216 --ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 273
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y
Sbjct: 1120 LLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKF 1178
Query: 274 AQELRTLVIKEMTDMLR 290
+L + +E+ +++
Sbjct: 1179 CSKLAEVFEQEIDPVMQ 1195
>sp|Q92793|CBP_HUMAN CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3
Length = 2442
Score = 37.7 bits (86), Expect = 0.25, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 220 YKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRT 279
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y +L
Sbjct: 1125 YFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKFCSKLAE 1183
Query: 280 LVIKEMTDMLR 290
+ +E+ +++
Sbjct: 1184 VFEQEIDPVMQ 1194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,153,666
Number of Sequences: 539616
Number of extensions: 10273553
Number of successful extensions: 141787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 2554
Number of HSP's that attempted gapping in prelim test: 70893
Number of HSP's gapped (non-prelim): 41549
length of query: 561
length of database: 191,569,459
effective HSP length: 123
effective length of query: 438
effective length of database: 125,196,691
effective search space: 54836150658
effective search space used: 54836150658
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 64 (29.3 bits)