Query 008573
Match_columns 561
No_of_seqs 196 out of 1093
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 13:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05495 Bromo_cbp_like Bromodo 99.9 1.2E-26 2.6E-31 204.3 11.0 103 186-289 2-107 (108)
2 cd05507 Bromo_brd8_like Bromod 99.9 1.3E-26 2.8E-31 202.5 10.4 98 190-288 6-103 (104)
3 cd05497 Bromo_Brdt_I_like Brom 99.9 1.5E-26 3.2E-31 203.7 10.2 95 192-287 10-106 (107)
4 cd05505 Bromo_WSTF_like Bromod 99.9 1.9E-26 4.1E-31 200.0 9.9 96 189-285 2-97 (97)
5 cd05496 Bromo_WDR9_II Bromodom 99.9 5.5E-26 1.2E-30 204.1 11.3 103 189-292 7-110 (119)
6 KOG1474 Transcription initiati 99.9 3.2E-26 7E-31 252.4 10.5 109 182-291 217-327 (640)
7 cd05504 Bromo_Acf1_like Bromod 99.9 1.1E-25 2.3E-30 200.5 10.4 102 186-288 11-112 (115)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.7E-25 3.7E-30 192.9 9.8 96 189-285 2-97 (97)
9 cd05508 Bromo_RACK7 Bromodomai 99.9 1.9E-25 4.1E-30 194.7 9.6 95 189-285 5-99 (99)
10 cd05502 Bromo_tif1_like Bromod 99.9 3.9E-25 8.5E-30 194.0 10.9 102 187-290 4-108 (109)
11 cd05509 Bromo_gcn5_like Bromod 99.9 5.6E-25 1.2E-29 189.7 10.5 97 190-287 4-100 (101)
12 cd05510 Bromo_SPT7_like Bromod 99.9 9E-25 2E-29 194.2 10.1 102 186-288 6-109 (112)
13 cd05528 Bromo_AAA Bromodomain; 99.9 1.4E-24 3E-29 192.9 10.1 100 190-290 6-109 (112)
14 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.8E-24 4E-29 190.1 10.0 98 189-287 3-106 (107)
15 cd05520 Bromo_polybromo_III Br 99.9 1.7E-24 3.8E-29 189.4 9.7 95 189-284 2-102 (103)
16 cd05499 Bromo_BDF1_2_II Bromod 99.9 2E-24 4.4E-29 187.0 10.0 96 189-285 2-102 (102)
17 cd05506 Bromo_plant1 Bromodoma 99.9 2.5E-24 5.4E-29 184.8 10.1 95 190-285 3-99 (99)
18 cd05513 Bromo_brd7_like Bromod 99.9 2.4E-24 5.2E-29 187.5 9.5 93 190-283 4-96 (98)
19 cd05511 Bromo_TFIID Bromodomai 99.9 4.6E-24 1E-28 189.0 11.1 101 190-291 3-103 (112)
20 cd05498 Bromo_Brdt_II_like Bro 99.9 3.7E-24 8.1E-29 184.9 10.2 96 189-285 2-102 (102)
21 cd05512 Bromo_brd1_like Bromod 99.9 3E-24 6.5E-29 186.4 9.5 90 190-280 4-93 (98)
22 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.5E-24 7.7E-29 186.3 9.9 98 187-285 4-103 (103)
23 cd05501 Bromo_SP100C_like Brom 99.9 3.4E-23 7.3E-28 182.3 11.2 98 188-289 3-100 (102)
24 cd05524 Bromo_polybromo_I Brom 99.9 2.7E-23 6E-28 184.5 10.3 100 190-290 5-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 3.2E-23 6.9E-28 181.5 10.3 95 190-285 3-103 (105)
26 cd05519 Bromo_SNF2 Bromodomain 99.9 3.9E-23 8.4E-28 179.8 9.8 94 190-284 3-102 (103)
27 smart00297 BROMO bromo domain. 99.9 7.3E-23 1.6E-27 174.9 10.1 98 189-287 9-106 (107)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 1.1E-22 2.3E-27 184.3 10.6 99 187-286 24-126 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 1.2E-22 2.7E-27 178.9 10.1 94 190-284 5-104 (106)
30 cd05518 Bromo_polybromo_IV Bro 99.9 1.2E-22 2.7E-27 178.0 9.6 92 191-283 4-101 (103)
31 cd05517 Bromo_polybromo_II Bro 99.9 1.7E-22 3.6E-27 176.9 9.9 93 190-283 3-101 (103)
32 cd04369 Bromodomain Bromodomai 99.9 8.7E-22 1.9E-26 161.8 9.0 94 190-284 3-98 (99)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.3E-21 2.9E-26 171.2 9.9 81 202-283 22-102 (104)
34 PF00439 Bromodomain: Bromodom 99.9 1.8E-21 3.9E-26 159.8 9.1 84 192-276 1-84 (84)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 7.7E-21 1.7E-25 167.7 9.7 94 190-286 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 5.4E-20 1.2E-24 163.6 10.9 96 192-288 5-106 (109)
37 COG5076 Transcription factor i 99.7 9.2E-18 2E-22 174.1 7.6 90 201-291 162-251 (371)
38 cd05526 Bromo_polybromo_VI Bro 99.7 3.6E-17 7.9E-22 146.1 10.2 96 190-288 6-107 (110)
39 KOG1245 Chromatin remodeling c 99.7 8.1E-18 1.8E-22 198.3 7.5 97 192-290 1306-1402(1404)
40 KOG1472 Histone acetyltransfer 99.5 3.5E-15 7.6E-20 166.1 5.1 99 191-290 610-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 2.3E-12 4.9E-17 115.4 2.6 78 189-267 5-91 (114)
42 KOG0955 PHD finger protein BR1 99.0 2E-10 4.3E-15 133.0 6.5 97 192-289 570-666 (1051)
43 KOG0008 Transcription initiati 99.0 2E-10 4.3E-15 133.7 5.3 96 195-291 1390-1485(1563)
44 cd05491 Bromo_TBP7_like Bromod 98.9 1.9E-09 4E-14 98.2 6.4 42 225-267 62-103 (119)
45 KOG0008 Transcription initiati 98.9 2.3E-09 5E-14 125.1 7.1 105 184-289 1258-1362(1563)
46 KOG0386 Chromatin remodeling c 98.8 5.4E-09 1.2E-13 119.9 8.1 100 190-290 1027-1132(1157)
47 KOG1827 Chromatin remodeling c 98.8 7.1E-09 1.5E-13 115.0 7.4 95 190-285 55-155 (629)
48 KOG1474 Transcription initiati 98.7 5.4E-09 1.2E-13 116.7 1.3 93 198-291 3-97 (640)
49 KOG1472 Histone acetyltransfer 98.6 1.8E-08 4E-13 113.2 4.0 71 201-272 300-370 (720)
50 KOG1828 IRF-2-binding protein 98.4 6.6E-08 1.4E-12 102.2 -0.4 95 194-289 26-120 (418)
51 KOG1828 IRF-2-binding protein 98.1 2.8E-06 6E-11 90.2 4.2 84 194-279 215-298 (418)
52 COG5076 Transcription factor i 97.5 2E-05 4.4E-10 82.7 0.3 88 200-288 276-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.6 0.0035 7.5E-08 58.6 5.2 66 227-293 59-124 (131)
54 KOG0644 Uncharacterized conser 89.4 0.32 6.9E-06 57.1 3.6 59 224-283 1050-1108(1113)
55 KOG0732 AAA+-type ATPase conta 88.0 0.22 4.8E-06 59.7 1.3 64 203-267 531-601 (1080)
56 KOG0644 Uncharacterized conser 78.2 1.5 3.2E-05 51.9 2.6 82 190-281 77-187 (1113)
57 KOG1827 Chromatin remodeling c 71.8 0.67 1.5E-05 53.0 -2.1 74 205-279 213-286 (629)
58 TIGR02606 antidote_CC2985 puta 53.9 18 0.0004 30.2 3.8 28 231-259 12-39 (69)
59 PF03693 RHH_2: Uncharacterise 39.7 35 0.00075 29.5 3.3 27 231-258 15-41 (80)
60 PF02178 AT_hook: AT hook moti 30.6 23 0.00049 21.5 0.6 11 515-525 1-11 (13)
61 PF14372 DUF4413: Domain of un 23.3 2.7E+02 0.0058 24.6 6.2 50 239-289 3-52 (101)
62 smart00384 AT_hook DNA binding 22.5 46 0.00099 23.8 1.0 12 515-526 1-12 (26)
63 PF07462 MSP1_C: Merozoite sur 20.0 4E+02 0.0087 31.1 8.1 41 248-292 221-261 (574)
No 1
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=204.29 Aligned_cols=103 Identities=23% Similarity=0.424 Sum_probs=98.0
Q ss_pred cccchHHHHHHHHHHhC-cCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh
Q 008573 186 AVKSEPLVRFLGMIRSH-RLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 186 ~~~sepLlkILe~L~sh-k~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
....+.|+.||+.|..+ +.+|+|..||++. ++|+||+||++||||+||++||.+|.|.++. +|+.||+|||.||+.
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~ 80 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPW-QYVDDVWLMFDNAWL 80 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 34567899999999999 9999999999986 7999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
||+++|.+|.+|..|+.+|+++|..++
T Consensus 81 yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 81 YNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998876
No 2
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=202.49 Aligned_cols=98 Identities=23% Similarity=0.455 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..|+.||+.|..|+.+++|..||+...+|+||++|++||||+||+.||+.|.|.++. +|.+||.|||.||++||+++|.
T Consensus 6 ~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 84 (104)
T cd05507 6 KAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA-EFQRDVLLMFQNAIMYNSSDHD 84 (104)
T ss_pred HHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008573 270 EYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~ 288 (561)
+|.+|..|++.|.++|...
T Consensus 85 v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 85 VYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998764
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=203.67 Aligned_cols=95 Identities=22% Similarity=0.416 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
|..||..|+.|+.|+||..||++. ++|+||+||++||||+||+.||..+.|.++. +|+.||.|||.||+.||+++|.
T Consensus 10 ~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 88 (107)
T cd05497 10 LKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSAS-ECIQDFNTMFTNCYIYNKPGDD 88 (107)
T ss_pred HHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 357899999999999999999986 7999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008573 270 EYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk 287 (561)
+|.+|..|+++|+++|.+
T Consensus 89 i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 89 VVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999876
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.9e-26 Score=199.98 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
.+.|..||..|+.|+.+++|..||+..++|+||+||++||||+||+.||+.+.|.++. +|.+||.|||.||++||+++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQ-EFLDDMKLVFSNAEKYYENGS 80 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEM 285 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~m 285 (561)
.||.+|..|+++|...+
T Consensus 81 ~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 81 YVLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998653
No 5
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.5e-26 Score=204.12 Aligned_cols=103 Identities=17% Similarity=0.328 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCC-C
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK-S 267 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~-g 267 (561)
...|..||..|+.|+.++||+.||+...+|+||+||++||||+||+.||..|.|.++. +|..||+|||.||+.||++ +
T Consensus 7 ~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~-ef~~D~~lif~Na~~yN~~~~ 85 (119)
T cd05496 7 KKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM-EFAKDVRLIFSNSKSYTPNKR 85 (119)
T ss_pred HHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3568999999999999999999999999999999999999999999999999999999 9999999999999999985 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Q 008573 268 SQEYAAAQELRTLVIKEMTDMLRKQ 292 (561)
Q Consensus 268 S~VykaA~~Lr~lfek~mkk~lpk~ 292 (561)
|.||.+|..|..+|+++|.+++...
T Consensus 86 s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 86 SRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 6
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.93 E-value=3.2e-26 Score=252.41 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=102.7
Q ss_pred cccccccchHHHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 008573 182 KKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNN 259 (561)
Q Consensus 182 ~~~p~~~sepLlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsN 259 (561)
.......+..|..||..|+.|+++|||+.|||+. ++||||+||++||||+||+.||..+.|.++. +|++||+|||.|
T Consensus 217 ~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~-eF~~DVRL~F~N 295 (640)
T KOG1474|consen 217 SKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAE-EFAADVRLTFDN 295 (640)
T ss_pred ccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHH-HHHHHHHHHHHH
Confidence 3445667788999999999999999999999996 7999999999999999999999999999999 999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 260 FVIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 260 A~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
|++||+++++||.||..|+.+|+.+|..+..+
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~ 327 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLE 327 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999997764
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=200.49 Aligned_cols=102 Identities=25% Similarity=0.430 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
+...+.|..||..|..|+.+++|..||+...+|+||++|++||||+||++||..|.|.++. +|..||.|||.||++||+
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~-~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAE-EFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 5667889999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~ 288 (561)
++|.+|.+|..|+.+|+++|.++
T Consensus 90 ~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 90 EHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.7e-25 Score=192.85 Aligned_cols=96 Identities=22% Similarity=0.356 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
+..|..||..|..|+.+++|..||+...+|+||.+|++||||+||+.||.++.|.++. +|..||.|||.||+.||+++|
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLE-EFAEDVRLVFDNCETFNEDDS 80 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEM 285 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~m 285 (561)
.+|.+|..|+++|+.+|
T Consensus 81 ~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 81 EVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998764
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.9e-25 Score=194.74 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
+..|..+|+.|+ |+.+|+|..||+..++|+||.+|++||||+||++||.+|.|.++. +|.+||.|||.||++||+++|
T Consensus 5 ~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~Na~~YN~~~s 82 (99)
T cd05508 5 SKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTD-AFLADAKWILHNAIIYNGGDH 82 (99)
T ss_pred HHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 345778888888 999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEM 285 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~m 285 (561)
.+|.+|..|.++|...|
T Consensus 83 ~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 83 KLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999887654
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.9e-25 Score=193.98 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=97.7
Q ss_pred ccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 187 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR---GLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 187 ~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~---G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
.....|..||..|..|+.++||..||+. .+|+||.+|++||||+||++||+. +.|.++. +|.+||+|||.||+.|
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPE-EFVADVRLMFKNCYKF 81 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999 899999999999999999999998 6999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
|+++|.++.+|..|+.+|+++|..++|
T Consensus 82 N~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 82 NEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999886
No 11
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.6e-25 Score=189.68 Aligned_cols=97 Identities=23% Similarity=0.485 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||..+.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~~s~ 82 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLE-EFVADLKLIFDNCRLYNGPDTE 82 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008573 270 EYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk 287 (561)
+|.+|..|+.+|++.|.+
T Consensus 83 ~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 83 YYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9e-25 Score=194.20 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=95.2
Q ss_pred cccchHHHHHHHHHHhC-cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 008573 186 AVKSEPLVRFLGMIRSH-RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 264 (561)
Q Consensus 186 ~~~sepLlkILe~L~sh-k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN 264 (561)
....+.|..||..|+.| +.+++|..||+..++|+||++|++||||+||++||..+.|.++. +|.+||.|||.||+.||
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKA-EFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 34556799999999999 89999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHH
Q 008573 265 RKSS-QEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 265 ~~gS-~VykaA~~Lr~lfek~mkk~ 288 (561)
++++ .+|.+|..|+++|+..|..+
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9865 78899999999999988764
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=1.4e-24 Score=192.90 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC--
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS-- 267 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g-- 267 (561)
..|..||+.|+.|+.+++|..||+..++|+||++|++||||+||+.||..+.|.++. +|..||.|||.||+.||+++
T Consensus 6 ~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~ 84 (112)
T cd05528 6 LFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAK-DFLKDIDLIVTNALEYNPDRDP 84 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHH-HHHHHHHHHHHHHHHHCCCCCc
Confidence 458899999999999999999999999999999999999999999999999999999 99999999999999999995
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHhh
Q 008573 268 --SQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 268 --S~VykaA~~Lr~lfek~mkk~lp 290 (561)
+.++.+|..|+++|.++|.+.+|
T Consensus 85 ~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 85 ADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998775
No 14
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.8e-24 Score=190.05 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhCcC------CccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh
Q 008573 189 SEPLVRFLGMIRSHRL------SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 189 sepLlkILe~L~shk~------S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
.+.|..||+.|..+.. ++||..||+...+|+||.+|++||||+||+.+|..|.|.++. +|..||.|||.||+.
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~ 81 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLE-DLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 3568888998888766 899999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mkk 287 (561)
||+++|.+|.+|..|+.+|...|++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998875
No 15
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.7e-24 Score=189.39 Aligned_cols=95 Identities=26% Similarity=0.410 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh
Q 008573 189 SEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 189 sepLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
++||..||+.|+.+. .++||..||+...+|+||+||++||||+||+.||..+.|.++. +|+.||.|||.||++
T Consensus 2 ~~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~ 80 (103)
T cd05520 2 SNPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLE-ELEADLNLMFENAKR 80 (103)
T ss_pred CchHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 578999999998764 7899999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 008573 263 FFRKSSQEYAAAQELRTLVIKE 284 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~ 284 (561)
||+++|.+|.+|..|+.+|..+
T Consensus 81 yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 81 YNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999753
No 16
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2e-24 Score=187.02 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHh---CcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 189 SEPLVRFLGMIRS---HRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 189 sepLlkILe~L~s---hk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
++.|..||..|.. +..++||+.||+.. .+|+||++|++||||+||+.||..+.|.++. +|..||+|||.||+.|
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~-ef~~D~~li~~N~~~y 80 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAK-EFERDVRLIFKNCYTF 80 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4678899999987 46799999999998 9999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~m 285 (561)
|+++|.+|.+|..|+.+|+++|
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998865
No 17
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.5e-24 Score=184.78 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 267 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g 267 (561)
..|..||+.|+.|+.+++|..||+.. ++|+||.+|++||||+||+.||+++.|.++. +|..||.|||.||+.||+++
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 3 KQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE-EFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 56899999999999999999999976 7999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008573 268 SQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 268 S~VykaA~~Lr~lfek~m 285 (561)
|.+|.+|..|+.+|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998764
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=187.48 Aligned_cols=93 Identities=16% Similarity=0.301 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||+.+.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 4 KALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIE-EFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred HHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 457889999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008573 270 EYAAAQELRTLVIK 283 (561)
Q Consensus 270 VykaA~~Lr~lfek 283 (561)
+|.+|..|.+...+
T Consensus 83 ~~~~A~~L~~~~~~ 96 (98)
T cd05513 83 YYKAAKKLLHSGMK 96 (98)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999875543
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.6e-24 Score=189.04 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
-.|..||..|+.|+.+++|..||+...+|+||++|++||||+||++||..+.|.++. +|.+||.|||.||+.||+++|.
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE-EFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 357899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008573 270 EYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~lpk 291 (561)
+|.+|..|..+|...|..+..+
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999887654
No 20
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.7e-24 Score=184.88 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhC---cCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 189 SEPLVRFLGMIRSH---RLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 189 sepLlkILe~L~sh---k~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
.+.|..||..|+.+ +.+++|..||+.. ++|+||++|++||||+||+.+|..+.|.++. +|..||+|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQ-EFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 35689999999999 8999999999986 6999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~m 285 (561)
|+++|.+|.+|..|+.+|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3e-24 Score=186.43 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..|..+|+.|..|+.+++|..||+..++|+||++|++||||+||++||..+.|.++. +|..||+|||.||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLE-DFEADFNLIINNCLAYNAKDTI 82 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 357899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008573 270 EYAAAQELRTL 280 (561)
Q Consensus 270 VykaA~~Lr~l 280 (561)
+|.+|..|+..
T Consensus 83 ~~~~A~~l~~~ 93 (98)
T cd05512 83 FYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 22
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.5e-24 Score=186.28 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=93.0
Q ss_pred ccchHHHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 008573 187 VKSEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 264 (561)
Q Consensus 187 ~~sepLlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN 264 (561)
.+.+.|+.||..|..|+.+++|..||++. .+|+||++|++||||+||+.||..+.|.++. +|..||+|||.||+.||
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN 82 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVE-EFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 34567999999999999999999999975 7999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008573 265 RKSSQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 265 ~~gS~VykaA~~Lr~lfek~m 285 (561)
+++|.++.+|..|+..|++.|
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 23
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.4e-23 Score=182.33 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=91.9
Q ss_pred cchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC
Q 008573 188 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 267 (561)
Q Consensus 188 ~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g 267 (561)
.+..|-.||-.|+.|+.+++|..+ +..+||||+||++||||+||+.||.++.|.++. +|.+||+|||.||+.||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~-ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVE-GFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHcCCC
Confidence 456688999999999999999763 458999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHh
Q 008573 268 SQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 268 S~VykaA~~Lr~lfek~mkk~l 289 (561)
.+|.+|..|..+|++.|..++
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.7e-23 Score=184.54 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHh------CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~s------hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..||+.|+. +..+.+|.++|+...+|+||++|++||||+||++||..+.|.++. +|..||.|||+||+.|
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 83 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVD-DLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 468888888885 455689999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
|+++|.+|.+|..|+.+|.+.+..+++
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988775
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.2e-23 Score=181.50 Aligned_cols=95 Identities=23% Similarity=0.413 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHh------CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~s------hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..||+.|.. |+.+++|..||+..++|+||.+|++||||+||+.||..+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLD-DMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 456777777764 467899999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~m 285 (561)
|+++|.+|.+|..|+.+|....
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 26
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.9e-23 Score=179.79 Aligned_cols=94 Identities=20% Similarity=0.354 Sum_probs=88.2
Q ss_pred hHHHHHHHHHH------hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIR------SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~------shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..||+.|. .++.+++|..||+...+|+||++|++||||+||++||+.+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLE-EFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 45788888888 4557999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKE 284 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~ 284 (561)
|+++|.+|.+|..|+.+|..+
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999765
No 27
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=7.3e-23 Score=174.95 Aligned_cols=98 Identities=29% Similarity=0.488 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
...|..|+..|..|+.+++|..||+...+|+||.+|.+||||.||+.||+++.|.++. +|..||.|||.||+.||++++
T Consensus 9 ~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~~n~~~s 87 (107)
T smart00297 9 QSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVE-EFVADVQLMFSNAKTYNGPDS 87 (107)
T ss_pred HHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3457888999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~mkk 287 (561)
.+|.+|..|..+|...|..
T Consensus 88 ~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 88 EVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998875
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=184.30 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=93.2
Q ss_pred ccchHHHHHHHHHH---hCcCCccccCCCCcc-cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh
Q 008573 187 VKSEPLVRFLGMIR---SHRLSSHFERRLRSQ-ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 187 ~~sepLlkILe~L~---shk~S~pF~ePVd~q-e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
.....|+.+|..|. .++.+++|..||+.. .+|+||++|++||||+||++||.++.|.++. +|..||.|||.||+.
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~Na~~ 102 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLE-ALRHDVRLILSNAET 102 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 34455888899998 999999999999999 9999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMT 286 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mk 286 (561)
||+++|.+|.+|..|+.+|...|.
T Consensus 103 yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 103 FNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988775
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.2e-22 Score=178.91 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhC------cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~sh------k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
..|..||+.|..+ ..+++|.++|+...+|+||++|++||||+||+.+|..|.|.++. +|..||.|||.||+.|
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~-ef~~D~~l~f~Na~~y 83 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPE-AFDSDMLKVFRNAEKY 83 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4567777777654 46799999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKE 284 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~ 284 (561)
|+++|.+|.+|..|+++|.+.
T Consensus 84 n~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 84 YGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999753
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.2e-22 Score=177.96 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=84.1
Q ss_pred HHHHHHHHHH------hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 008573 191 PLVRFLGMIR------SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 264 (561)
Q Consensus 191 pLlkILe~L~------shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN 264 (561)
.|..|++.|. .+..+.+|..+|+..++||||++|++||||+||+.+|..+.|.++. +|..||.|||.||+.||
T Consensus 4 ~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN 82 (103)
T cd05518 4 RMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEE-ELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3555555554 4568999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 008573 265 RKSSQEYAAAQELRTLVIK 283 (561)
Q Consensus 265 ~~gS~VykaA~~Lr~lfek 283 (561)
+++|.||.+|..|+.+|..
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=176.95 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhC------cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~sh------k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..||+.|..+ ..+++|..+++..++|+||++|++||||+||++||..+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 81 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIE-DMEKDLDLMVKNAKTF 81 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4577788888755 45799999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIK 283 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek 283 (561)
|+++|.+|.+|..|+.+|+.
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999974
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=8.7e-22 Score=161.79 Aligned_cols=94 Identities=27% Similarity=0.412 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhC--cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC
Q 008573 190 EPLVRFLGMIRSH--RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 267 (561)
Q Consensus 190 epLlkILe~L~sh--k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g 267 (561)
..|..||..|..+ +.+++|..||+...+|+||.+|++||||.+|+.||..+.|.++. +|..||.|||.||+.||+.+
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLE-EFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 3578899999999 99999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 008573 268 SQEYAAAQELRTLVIKE 284 (561)
Q Consensus 268 S~VykaA~~Lr~lfek~ 284 (561)
+.++.+|..|..+|...
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999765
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.3e-21 Score=171.19 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=78.8
Q ss_pred CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 008573 202 HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLV 281 (561)
Q Consensus 202 hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lf 281 (561)
|+.+++|..+|+...+|+||++|++||||+||+.||..+.|.++. +|..||.|||.||+.||+++|.+|.+|..|+..|
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f 100 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFD-QFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEA 100 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HH
Q 008573 282 IK 283 (561)
Q Consensus 282 ek 283 (561)
..
T Consensus 101 ~~ 102 (104)
T cd05522 101 RL 102 (104)
T ss_pred HH
Confidence 75
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.85 E-value=1.8e-21 Score=159.81 Aligned_cols=84 Identities=27% Similarity=0.445 Sum_probs=79.5
Q ss_pred HHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 271 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vy 271 (561)
|..||+.|..|+.+++|..||+...+|+|+.+|++||||.+|+.||..|.|.++. +|..||.|||.||+.||+++|.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~-~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIE-EFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHH-HHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHH-HHHHHHHHHHHHHHHHCCCcCHHH
Confidence 6789999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHH
Q 008573 272 AAAQE 276 (561)
Q Consensus 272 kaA~~ 276 (561)
.+|..
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99964
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.7e-21 Score=167.67 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhC------cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~sh------k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..||+.|... ..+.+|..+++...+|+||++|++||||+||++||.. |.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~-ef~~D~~li~~Na~~y 80 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQ-EFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHH
Confidence 4577777777654 4567999999999999999999999999999999998 99999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMT 286 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mk 286 (561)
|+++|.+|.+|..|+.+|...|.
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=5.4e-20 Score=163.64 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=85.1
Q ss_pred HHHHHHHHHh-CcCCccccCCCCc-----ccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 192 LVRFLGMIRS-HRLSSHFERRLRS-----QESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 192 LlkILe~L~s-hk~S~pF~ePVd~-----qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
|--++..+.+ .+-++||..||.. ..+|+||.+|++||||+||+.||.+|.|.++. +|.+||.|||+||+.||+
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLE-EFKADALLLLHNTAIFHG 83 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 4455566665 4668999999963 36999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~ 288 (561)
++|.+|.+|..|.+.+...|..+
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877664
No 37
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.71 E-value=9.2e-18 Score=174.15 Aligned_cols=90 Identities=29% Similarity=0.442 Sum_probs=86.1
Q ss_pred hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 008573 201 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 280 (561)
Q Consensus 201 shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~l 280 (561)
.+.++++|..+|+..++|+||.||+.||||.+|+++|..+.|.++. +|..||+|||.||+.||.++|.+|.+|..|+..
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~e-ef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFE-EFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 4568999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 008573 281 VIKEMTDMLRK 291 (561)
Q Consensus 281 fek~mkk~lpk 291 (561)
|..+|..+...
T Consensus 241 ~~~~i~~~~~~ 251 (371)
T COG5076 241 FLKLIEEIPEE 251 (371)
T ss_pred HHHHHHhcccc
Confidence 99999977654
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.71 E-value=3.6e-17 Score=146.12 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.|..|+..|+.|. ++.+|.++++ ..++||.+|+.||||.+|+++|+.|.|.++. +|..||.|||.||+.|
T Consensus 6 ~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld-~~~~D~~lmf~NAr~y 82 (110)
T cd05526 6 ELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLD-KFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHH-HHHHHHHHHHHHHHHh
Confidence 45778888888875 6889999988 4567889999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~ 288 (561)
|.++|.+|.+|..|+.+|.+.-..+
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766554
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.71 E-value=8.1e-18 Score=198.26 Aligned_cols=97 Identities=23% Similarity=0.357 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 271 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vy 271 (561)
|..||..|..|..+|||++||+..++|+||+||++||||+||+.+|..|.|.+.. +|..||.|||.||.+||.. |.|+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~e-ef~~Di~lvf~Nc~~yN~~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPE-EFATDIELVFDNCETYNED-SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHH-HHHHHHHHHHHHHHHhccc-hhhh
Confidence 7899999999999999999999999999999999999999999999999999999 9999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008573 272 AAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 272 kaA~~Lr~lfek~mkk~lp 290 (561)
.+...|++||++.+...++
T Consensus 1384 ~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhcchHHHHHHHHHHhhcC
Confidence 9999999999998877664
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=3.5e-15 Score=166.07 Aligned_cols=99 Identities=22% Similarity=0.437 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHH
Q 008573 191 PLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 270 (561)
Q Consensus 191 pLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~V 270 (561)
.+..||..|..|..+|||.+||...++||||.+|++||||.||+.+|..+.|..+. .|++|+.+||+||++||+..+.+
T Consensus 610 ~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~-~f~ad~~~vf~ncr~yn~~~~~y 688 (720)
T KOG1472|consen 610 AIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVE-LFMADVVRVFANCRMYNGSDTQY 688 (720)
T ss_pred HHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHH-HHHHHHHHHHhhhhccCCccchh
Confidence 46789999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008573 271 YAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 271 ykaA~~Lr~lfek~mkk~lp 290 (561)
|++|..|..+|...|...+.
T Consensus 689 ~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 689 YKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred eecccchhhhhcchhhhhhh
Confidence 99999999999999988754
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.25 E-value=2.3e-12 Score=115.41 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCc--ccCCccccccCCCCCHHHHHHHHhCC-------CCCCcHHHHHHHHHHHHHH
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRS--QESERYKKLVRQHIDLRTIQSRLDRG-------LYSNCFQKFFRDLLLLFNN 259 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~--qe~PDYydIIK~PMDLsTIKkKLe~G-------~YsS~~~EF~rDLrLIFsN 259 (561)
.+.|+.+|..+..|..+|||..||++ ..+|+||++|++||||+||+.+|..+ .|. ....+..++..++.|
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQI-VQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccc-ccccccccccccccc
Confidence 34567777777778899999999999 79999999999999999999999986 333 333666777777777
Q ss_pred HhhcCCCC
Q 008573 260 FVIFFRKS 267 (561)
Q Consensus 260 A~~YN~~g 267 (561)
|..||..+
T Consensus 84 ~~~~~~~~ 91 (114)
T cd05494 84 RSPSNIYA 91 (114)
T ss_pred cCcccccc
Confidence 77777643
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.04 E-value=2e-10 Score=133.04 Aligned_cols=97 Identities=23% Similarity=0.352 Sum_probs=90.9
Q ss_pred HHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 271 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vy 271 (561)
|..+|..|...+...+|..||+..++|||.+||++||||.||+.++..+.|.++. +|..|+.||+.||+.||..++.+|
T Consensus 570 l~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle-~ieed~~l~~~nc~~yn~~dtv~~ 648 (1051)
T KOG0955|consen 570 LQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLE-PIEEDVNLIVSNCMEYNAKDTVYY 648 (1051)
T ss_pred HHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhh-HHHHhHhHhHhHHHHhhccCeehH
Confidence 4477888888899999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008573 272 AAAQELRTLVIKEMTDML 289 (561)
Q Consensus 272 kaA~~Lr~lfek~mkk~l 289 (561)
.+|..|++++...+.+..
T Consensus 649 r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 649 RAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred hhhHHHHhhhhhHHHhcc
Confidence 999999998887776644
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.02 E-value=2e-10 Score=133.68 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=85.9
Q ss_pred HHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 008573 195 FLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAA 274 (561)
Q Consensus 195 ILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA 274 (561)
|+..+...+.+|+|+.||+.+.+|+||.+|++||||.||.+++....|.+.. +|.+||.|||.||+.||+..+.+..-|
T Consensus 1390 ~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~-e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1390 IVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRS-EFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred HHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHH-HHhhhhHhhcccceeecCccccccHHH
Confidence 3344556678999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008573 275 QELRTLVIKEMTDMLRK 291 (561)
Q Consensus 275 ~~Lr~lfek~mkk~lpk 291 (561)
..+-.+....|...+-.
T Consensus 1469 ~k~~ev~~~~~~e~~~~ 1485 (1563)
T KOG0008|consen 1469 RKIGEVGLANLLEYIEH 1485 (1563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777777665543
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.92 E-value=1.9e-09 Score=98.19 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC
Q 008573 225 RQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 267 (561)
Q Consensus 225 K~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g 267 (561)
-.||||+||++||.+|+|.++. +|++||+|||.||..||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~-~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPK-DFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHhCCHH
Confidence 3699999999999999999999 99999999999999999873
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.88 E-value=2.3e-09 Score=125.11 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=94.4
Q ss_pred cccccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 184 VLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 184 ~p~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
+.++.+..|..|++.+...++..+|..||+..+++|||.||+.||||.||++.|....|.+-. +|+.|+.|||.|..+|
T Consensus 1258 P~V~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~-~fle~~~~~~~ns~~y 1336 (1563)
T KOG0008|consen 1258 PSVSLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESRE-HFLEELPLIVSNSTKY 1336 (1563)
T ss_pred CeeecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHH-HHHHHhHHHhhchhhh
Confidence 335555567788999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
|++-+.+...+..|..++...|...-
T Consensus 1337 ng~~~~~t~~~q~mls~~~~~~~eke 1362 (1563)
T KOG0008|consen 1337 NGPLASLTRQQQSMLSLCFEKLKEKE 1362 (1563)
T ss_pred cCchHHHHHHHHHHHHHHHHhhchhH
Confidence 99999999999988887766665433
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.84 E-value=5.4e-09 Score=119.88 Aligned_cols=100 Identities=18% Similarity=0.336 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHh------CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~s------hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
.++..|+..... +..+..|...++...+||||.||+.||++..|.++|..+.|.++. ++..||.+||.||..|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLK-ELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHH-HHHHHHHhhcchhhhh
Confidence 457777776663 456789999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
|..+|.||..|..|+.+|......+..
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhc
Confidence 999999999999999999888877763
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.80 E-value=7.1e-09 Score=115.03 Aligned_cols=95 Identities=24% Similarity=0.333 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhC------cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 190 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 190 epLlkILe~L~sh------k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
..+..||..|+.+ .+...|.+..+....|.||.+|-.||.|..|++||..+.|.++. .|+.|++|||.||..|
T Consensus 55 ~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~-~f~~D~~lm~ena~~~ 133 (629)
T KOG1827|consen 55 PKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLS-FFQLDFLLMTENARLY 133 (629)
T ss_pred HHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHh
Confidence 3455666666554 35789999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008573 264 FRKSSQEYAAAQELRTLVIKEM 285 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~m 285 (561)
|.+++.+|.+|..|...|....
T Consensus 134 n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 134 NRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred cCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999887644
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.67 E-value=5.4e-09 Score=116.74 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=85.7
Q ss_pred HHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 008573 198 MIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQ 275 (561)
Q Consensus 198 ~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~ 275 (561)
.++.|.++|+|..||+.. .+|+||.+|++|||+.||..+|.+.+|.+.. +..+||..+|.||..||...-.|+.++.
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~-~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSAS-ECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHh-hhhhhccccccchhcccCCccchhhccc
Confidence 356789999999999975 6899999999999999999999998888888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 008573 276 ELRTLVIKEMTDMLRK 291 (561)
Q Consensus 276 ~Lr~lfek~mkk~lpk 291 (561)
.+..+|.+.+......
T Consensus 82 ~~~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMPSD 97 (640)
T ss_pred cchhhccccccccccc
Confidence 9999998888777654
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.63 E-value=1.8e-08 Score=113.24 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.9
Q ss_pred hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q 008573 201 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYA 272 (561)
Q Consensus 201 shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vyk 272 (561)
.+.++++|..+|+...+|+||.||+-||||.|+-.++..+.|.+.. +|..|+.+||.||..||...+....
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~-~fv~d~~~~~~n~~~~n~ee~~~~~ 370 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKE-EFVNDLMLIWRNCEKYNSEESHGLI 370 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchh-HHHHHHHHHHhcchhhccccchhhh
Confidence 5899999999999999999999999999999999999999999999 9999999999999999998765443
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.36 E-value=6.6e-08 Score=102.18 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=84.6
Q ss_pred HHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 008573 194 RFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 273 (561)
Q Consensus 194 kILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vyka 273 (561)
.+|..+.....-..|.-||...-.|+|.+||..|||+.||+.+|+.++|.++. +|..|..||+.||+.||...+.++.+
T Consensus 26 hhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~-~m~~d~kl~~~na~~yn~~~Tv~~~a 104 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLS-QMEFDRKLPDGNATLYNLHPTVPIVA 104 (418)
T ss_pred HHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceech-hhhhhhcccccchhhhhcCCcccccc
Confidence 45555556667788999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008573 274 AQELRTLVIKEMTDML 289 (561)
Q Consensus 274 A~~Lr~lfek~mkk~l 289 (561)
|..|..+...++...+
T Consensus 105 aKrL~~v~~~~~qe~~ 120 (418)
T KOG1828|consen 105 AKRLCPVRLGMTQERL 120 (418)
T ss_pred ccccchhhcchhhHHH
Confidence 9999987666655544
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.07 E-value=2.8e-06 Score=90.18 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=75.8
Q ss_pred HHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 008573 194 RFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 273 (561)
Q Consensus 194 kILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~Vyka 273 (561)
..+..+........|..++....+|.|.-+|++|+|+.|++.++.++.|.| . +|..|+.|||-||++||.++..+|.+
T Consensus 215 ~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~-~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 215 LQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-L-SFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-h-hhhcccchhhHHHHhcCCcchHHHHH
Confidence 344556666778899999999999999999999999999999999999999 6 99999999999999999999999999
Q ss_pred HHHHHH
Q 008573 274 AQELRT 279 (561)
Q Consensus 274 A~~Lr~ 279 (561)
|..+..
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 986554
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.54 E-value=2e-05 Score=82.67 Aligned_cols=88 Identities=28% Similarity=0.400 Sum_probs=81.8
Q ss_pred HhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 008573 200 RSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRT 279 (561)
Q Consensus 200 ~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~ 279 (561)
..+-..|+|..++.....|+|+++|..+|++.|++-+|..++|.... .|++|..++|.||..||..-..++..+..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (371)
T COG5076 276 QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEE-TFVRDAKLFFDNCVMYNGEVTDYYKNANVLED 354 (371)
T ss_pred ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCcc-ccccccchhhhcccccchhhhhhhhhccchhh
Confidence 45667899999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008573 280 LVIKEMTDM 288 (561)
Q Consensus 280 lfek~mkk~ 288 (561)
+|...+.-.
T Consensus 355 ~~~~~~~~~ 363 (371)
T COG5076 355 FVIKKTRLI 363 (371)
T ss_pred hHhhhhhhh
Confidence 887776654
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.57 E-value=0.0035 Score=58.61 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008573 227 HIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQQ 293 (561)
Q Consensus 227 PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk~~ 293 (561)
|.||..|++||+.|.|.++. +|.+||.+|+.-++.--+....+-.+-..+.-+|.+.|...++.+.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~-~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVL-DFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHH-HHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 89999999999999999999 9999999999988877766666666666778889999999988643
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.37 E-value=0.32 Score=57.11 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=51.1
Q ss_pred cCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 008573 224 VRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIK 283 (561)
Q Consensus 224 IK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lfek 283 (561)
-.-|..|+.|+.+|++.+|.++. .|..|+-.|..||-+|++.+-.+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e-~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQE-ALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhH-hhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 45688999999999999999999 999999999999999999988666666666665543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=0.22 Score=59.69 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=58.3
Q ss_pred cCCccccCCCCccc-----CCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHH--HHHHHHHHHhhcCCCC
Q 008573 203 RLSSHFERRLRSQE-----SERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFR--DLLLLFNNFVIFFRKS 267 (561)
Q Consensus 203 k~S~pF~ePVd~qe-----~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~r--DLrLIFsNA~~YN~~g 267 (561)
+.+..|..|++... +++|-.+|+++||+...-.++..+.|.++. +|.. ++.|||.|++.||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~-~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVR-SFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHH-hhhcccchhhhcCcHHhcCCCc
Confidence 45788999998652 569999999999999999999999999998 9999 9999999999999976
No 56
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=78.19 E-value=1.5 Score=51.91 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCC--------------C----------Cc
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLY--------------S----------NC 245 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~Y--------------s----------S~ 245 (561)
..|+.||.+| .-+|+....|.|..+...|.+|+|++..|.+..| . ++
T Consensus 77 dhll~i~kql---------v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl 147 (1113)
T KOG0644|consen 77 DHLLQILKQL---------VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSL 147 (1113)
T ss_pred HHHHHHHHHh---------ccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCccccccee
Confidence 4577777776 4567778889999999999999999999986655 2 22
Q ss_pred H---H--HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 008573 246 F---Q--KFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLV 281 (561)
Q Consensus 246 ~---~--EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lf 281 (561)
. . +..+-..+|-.||..|+.|++ +++-+..+.++.
T Consensus 148 ~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 148 RSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred ccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHH
Confidence 2 0 366778889999999999999 666666665543
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=71.84 E-value=0.67 Score=53.04 Aligned_cols=74 Identities=5% Similarity=-0.028 Sum_probs=69.0
Q ss_pred CccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 008573 205 SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRT 279 (561)
Q Consensus 205 S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~ 279 (561)
...|+..++-..+|.||.+++=||-+....+++..+.|.... .|..|+.++|.|++.|+....-++..+..|.+
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~-~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTS-LYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecc-cccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 467788888889999999999999999999999999999999 99999999999999999999999999988776
No 58
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=53.91 E-value=18 Score=30.21 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 008573 231 RTIQSRLDRGLYSNCFQKFFRDLLLLFNN 259 (561)
Q Consensus 231 sTIKkKLe~G~YsS~~~EF~rDLrLIFsN 259 (561)
..|+..|..|.|.|.. +++++.++++.=
T Consensus 12 ~~i~~~V~sG~Y~s~S-EVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSAS-EVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHHH
Confidence 4688999999999999 999999988753
No 59
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=39.65 E-value=35 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 008573 231 RTIQSRLDRGLYSNCFQKFFRDLLLLFN 258 (561)
Q Consensus 231 sTIKkKLe~G~YsS~~~EF~rDLrLIFs 258 (561)
.-|+..|..|.|.|.. ++++|...++.
T Consensus 15 ~~i~~~V~sG~Y~s~S-EvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSAS-EVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 4588999999999999 99999877775
No 60
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=30.63 E-value=23 Score=21.52 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=3.7
Q ss_pred cCCCCCCCccc
Q 008573 515 RRGVGRPPKRS 525 (561)
Q Consensus 515 kr~~grp~kk~ 525 (561)
+|..|||+|.+
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 36788988864
No 61
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=23.25 E-value=2.7e+02 Score=24.58 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 239 RGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 239 ~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
...|.+.. -|+..|..|-.....++..+..+..+|..|..-|.+.|....
T Consensus 3 ~~~~pTsn-~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 3 GSSYPTSN-LYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCCcCcHH-HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 45788888 999999888888877777778899999999999999987543
No 62
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=22.46 E-value=46 Score=23.83 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=9.7
Q ss_pred cCCCCCCCcccC
Q 008573 515 RRGVGRPPKRSA 526 (561)
Q Consensus 515 kr~~grp~kk~~ 526 (561)
+|..|||+|...
T Consensus 1 kRkRGRPrK~~~ 12 (26)
T smart00384 1 KRKRGRPRKAPK 12 (26)
T ss_pred CCCCCCCCCCCC
Confidence 478899999865
No 63
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=20.01 E-value=4e+02 Score=31.05 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 008573 248 KFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 292 (561)
Q Consensus 248 EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk~ 292 (561)
.++..|.-|+.| ..|.+.+|.--..+.. . ..+..+.+||+.
T Consensus 221 Hv~tElKeii~n-K~YtG~~~~~n~~~Vk--~-ALq~YqELLPKv 261 (574)
T PF07462_consen 221 HVFTELKEIIKN-KKYTGNDHAKNIAEVK--E-ALQAYQELLPKV 261 (574)
T ss_pred HHHHHHHHHHhc-CCCCCCChhhhHHHHH--H-HHHHHHHhCCCC
Confidence 455556666665 6788877765544432 2 234566777754
Done!