Query 008573
Match_columns 561
No_of_seqs 196 out of 1093
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 3.1E-27 1.1E-31 207.3 12.7 104 186-290 12-115 (117)
2 3nxb_A CAT eye syndrome critic 99.9 1.9E-27 6.5E-32 208.3 10.7 101 186-287 15-115 (116)
3 3d7c_A General control of amin 99.9 4.6E-27 1.6E-31 205.0 11.3 102 186-288 6-107 (112)
4 3mb3_A PH-interacting protein; 99.9 7.7E-27 2.6E-31 209.6 12.3 106 186-292 20-126 (135)
5 2yyn_A Transcription intermedi 99.9 8.1E-27 2.8E-31 210.4 12.0 105 185-291 18-124 (135)
6 4alg_A Bromodomain-containing 99.9 6.3E-27 2.1E-31 215.7 10.6 99 192-291 37-137 (154)
7 2dat_A Possible global transcr 99.9 9E-27 3.1E-31 206.7 10.9 104 185-289 11-120 (123)
8 1e6i_A Transcriptional activat 99.9 1.4E-26 4.8E-31 205.2 11.7 100 189-289 15-114 (121)
9 3p1f_A CREB-binding protein; s 99.9 1.9E-26 6.4E-31 202.8 11.6 105 186-291 10-117 (119)
10 3q2e_A Bromodomain and WD repe 99.9 2.6E-26 9E-31 203.4 12.5 106 187-293 10-116 (123)
11 2d9e_A Peregrin; four-helix bu 99.9 2E-26 6.8E-31 204.5 11.6 100 190-290 10-109 (121)
12 3mb4_A Protein polybromo-1; PB 99.9 1.7E-26 6E-31 204.8 10.9 102 187-289 15-122 (124)
13 2oss_A HUNK1 protein, bromodom 99.9 1.8E-26 6.3E-31 206.2 10.9 97 192-289 26-124 (127)
14 2grc_A Probable global transcr 99.9 2.8E-26 9.5E-31 205.3 11.7 107 184-291 8-121 (129)
15 3iu5_A Protein polybromo-1; PB 99.9 2.9E-26 1E-30 201.1 11.1 104 187-291 5-114 (116)
16 2ouo_A HUNK1 protein, bromodom 99.9 1.7E-26 5.8E-31 207.1 9.4 103 186-289 21-128 (130)
17 2i7k_A Bromodomain-containing 99.9 3.7E-26 1.3E-30 202.1 11.4 101 189-290 10-110 (117)
18 3mqm_A Probable histone-lysine 99.9 7.7E-26 2.6E-30 200.9 10.8 103 188-291 10-118 (126)
19 3rcw_A Bromodomain-containing 99.9 1.4E-25 4.6E-30 201.5 12.3 102 188-290 14-115 (135)
20 3ljw_A Protein polybromo-1; al 99.9 8.9E-26 3E-30 199.3 10.7 106 185-291 6-117 (120)
21 3hme_A Bromodomain-containing 99.9 1.1E-25 3.7E-30 200.0 11.1 99 189-288 15-113 (123)
22 3k2j_A Protein polybromo-1; PB 99.9 1.5E-25 5.1E-30 201.4 11.8 106 185-291 15-126 (130)
23 3jvl_A Bromodomain-containing 99.9 4.5E-26 1.6E-30 200.6 8.3 104 186-290 8-116 (120)
24 3fkm_X Signaling protein; brom 99.9 2.1E-25 7.1E-30 207.8 11.5 103 186-289 20-124 (166)
25 2ri7_A Nucleosome-remodeling f 99.9 2.5E-25 8.5E-30 205.6 9.0 101 186-287 71-171 (174)
26 3tlp_A Protein polybromo-1; PB 99.9 4.3E-25 1.5E-29 201.4 10.1 102 189-291 26-134 (150)
27 3uv4_A Second bromodomain of h 99.9 7.7E-25 2.6E-29 202.9 10.7 98 192-290 34-132 (158)
28 3dai_A ATPase family AAA domai 99.9 3.2E-24 1.1E-28 191.9 11.7 99 190-289 13-115 (130)
29 3o36_A Transcription intermedi 99.9 2.8E-24 9.4E-29 201.1 11.2 103 186-290 80-184 (184)
30 3uv5_A Transcription initiatio 99.9 6.3E-24 2.2E-28 209.5 11.6 105 186-291 13-117 (265)
31 3u5n_A E3 ubiquitin-protein li 99.9 2.7E-23 9.3E-28 198.1 10.5 104 186-291 80-203 (207)
32 2ro1_A Transcription intermedi 99.9 3.1E-23 1.1E-27 196.5 10.0 98 188-291 77-179 (189)
33 2dkw_A Hypothetical protein KI 99.9 8.9E-23 3E-27 184.0 11.9 99 186-290 11-113 (131)
34 3uv5_A Transcription initiatio 99.9 1.3E-22 4.5E-27 200.1 11.3 99 192-291 141-240 (265)
35 3aad_A Transcription initiatio 99.9 1.2E-22 4E-27 203.5 7.0 102 186-288 46-147 (292)
36 3aad_A Transcription initiatio 99.9 4.3E-22 1.5E-26 199.5 10.2 93 198-291 181-273 (292)
37 2r10_A Chromatin structure-rem 99.9 5E-22 1.7E-26 204.3 9.5 87 201-288 227-313 (361)
38 2r0y_A Chromatin structure-rem 99.9 4.7E-22 1.6E-26 201.3 9.1 87 201-288 177-263 (311)
39 2r10_A Chromatin structure-rem 99.8 2.7E-20 9.3E-25 191.5 8.0 94 192-288 83-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 7.7E-20 2.6E-24 185.2 8.2 93 193-288 34-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 4.6E-17 1.6E-21 150.6 12.4 101 186-291 6-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.5 5.9E-15 2E-19 140.3 8.4 89 191-291 79-167 (183)
43 3kxe_C Antitoxin protein PARD- 26.6 63 0.0021 27.2 4.1 30 230-260 15-44 (88)
44 3si5_X Protein CASC5; BUBR1-bl 24.7 31 0.0011 23.1 1.5 15 434-448 8-22 (24)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=3.1e-27 Score=207.25 Aligned_cols=104 Identities=24% Similarity=0.323 Sum_probs=99.8
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|..|+.+|+|..||+...+|+||++|++||||+||+.||..+.|.++. +|..||+|||.||+.||+
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE-TFALDVRLVFDNCETFNE 90 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 3456789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
++|.+|.+|..|+.+|+++|..++.
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999874
No 2
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=1.9e-27 Score=208.29 Aligned_cols=101 Identities=18% Similarity=0.342 Sum_probs=96.8
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
....+.|..||..|..|+.+++|..||+...+|+||.||++||||+||+.||.++.|.++. +|+.||+|||.||++||+
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE-EFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 3455779999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk 287 (561)
++|.+|.+|..|+.+|++.|.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=4.6e-27 Score=205.02 Aligned_cols=102 Identities=23% Similarity=0.285 Sum_probs=97.3
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|..|+.+++|..||+...+|+||+||++||||+||+.||.+|.|.++. +|.+||+|||.||++||+
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK-LFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHH-HHHHHHHHHHHHHHHHCC
Confidence 3445678999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~ 288 (561)
++|.+|.+|..|+.+|+++|..+
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999874
No 4
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=7.7e-27 Score=209.58 Aligned_cols=106 Identities=18% Similarity=0.328 Sum_probs=101.0
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|..|+.+++|..||+...+|+||+||++||||+||+.||..+.|.++. +|+.||.|||.||++||+
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 98 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKDVRLIFSNSKAYTP 98 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 4455679999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHhhhc
Q 008573 266 K-SSQEYAAAQELRTLVIKEMTDMLRKQ 292 (561)
Q Consensus 266 ~-gS~VykaA~~Lr~lfek~mkk~lpk~ 292 (561)
+ +|.||.+|..|+.+|+.+|..+++.+
T Consensus 99 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 99 SKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 89999999999999999999998863
No 5
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=8.1e-27 Score=210.42 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHHhh
Q 008573 185 LAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR--GLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 185 p~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~--G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
.+.....|..||..|+.|+.+++|..||+. .+|+||+||++||||+||+.||.. +.|.++. +|++||+|||.||++
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~-ef~~Dv~Lif~Na~~ 95 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAE 95 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHH-HHHHHHHHHHHHHHH
Confidence 344557899999999999999999999998 799999999999999999999998 5999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
||+++|.||.+|..|+.+|+.+|..++++
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 96 FNEPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999876
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=6.3e-27 Score=215.72 Aligned_cols=99 Identities=19% Similarity=0.371 Sum_probs=93.7
Q ss_pred HHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
|..||+.|+.|+.+|+|..||+.. ++|+||+||++||||+||+.||.++.|.++. +|+.||+|||.||++||+++|.
T Consensus 37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~YN~~~s~ 115 (154)
T 4alg_A 37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAAS-ECMQDFNTMFTNCYIYNKPTDD 115 (154)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 456789999999999999999987 7999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008573 270 EYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~lpk 291 (561)
||.+|..|+.+|+++|..+...
T Consensus 116 i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 116 IVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHCCch
Confidence 9999999999999999886644
No 7
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=9e-27 Score=206.70 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 008573 185 LAVKSEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFN 258 (561)
Q Consensus 185 p~~~sepLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFs 258 (561)
+......|..||+.|+.|+ .+++|..||+..++|+||+||++||||+||+.||.++.|.++. +|++||+|||.
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~ 89 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLG-DLEKDVMLLCH 89 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHH
Confidence 3555677999999999886 6999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 259 NFVIFFRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 259 NA~~YN~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
||++||+++|.+|.+|..|+.+|+..|+.++
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999888643
No 8
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.4e-26 Score=205.16 Aligned_cols=100 Identities=19% Similarity=0.375 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
...|..||..|..|+.+++|..||+...+|+||+||++||||+||+.||.+|.|.++. +|.+||+|||.||++||+++|
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s 93 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKME-DFIYDARLVFNNCRMYNGENT 93 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008573 269 QEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~mkk~l 289 (561)
.+|.+|..|+.+|+++|..+.
T Consensus 94 ~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 94 SYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998754
No 9
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=1.9e-26 Score=202.82 Aligned_cols=105 Identities=25% Similarity=0.425 Sum_probs=98.9
Q ss_pred cccchHHHHHHHHHHh-CcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhh
Q 008573 186 AVKSEPLVRFLGMIRS-HRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 186 ~~~sepLlkILe~L~s-hk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
....+.|+.+|..|.. ++.+|+|..||+.. ++|+||++|++||||+||+.||..+.|.++. +|..||+|||.||++
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW-QYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 4556779999999877 78999999999987 7999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
||+++|.+|.+|..|+.+|+++|..+++.
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998864
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.93 E-value=2.6e-26 Score=203.44 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=100.9
Q ss_pred ccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCC
Q 008573 187 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK 266 (561)
Q Consensus 187 ~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~ 266 (561)
...+.|..||..|..|+.+++|..||+...+|+||.||++||||+||+.||..+.|.++. +|+.||+|||.||++||++
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL-EFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 444669999999999999999999999999999999999999999999999999999999 9999999999999999996
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008573 267 -SSQEYAAAQELRTLVIKEMTDMLRKQQ 293 (561)
Q Consensus 267 -gS~VykaA~~Lr~lfek~mkk~lpk~~ 293 (561)
+|.||.+|..|+.+|+++|..+++++.
T Consensus 89 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 89 KRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 11
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=204.45 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..|..||..|+.|+.+++|..||+...+|+||+||++||||+||+.||.++.|.++. +|.+||+|||.||++||+++|.
T Consensus 10 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 88 (121)
T 2d9e_A 10 ILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFD-DFEEDFNLIVSNCLKYNAKDTI 88 (121)
T ss_dssp HHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008573 270 EYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~lp 290 (561)
+|.+|..|+.+|...|..+..
T Consensus 89 ~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 89 FYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877554
No 12
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=1.7e-26 Score=204.84 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=95.6
Q ss_pred ccchHHHHHHHHHHh------CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Q 008573 187 VKSEPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 260 (561)
Q Consensus 187 ~~sepLlkILe~L~s------hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA 260 (561)
...+.|..||+.|.. |+.+++|..||+..++|+||+||++||||+||+.||..+.|.++. +|+.||+|||.||
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 93 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNNA 93 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 444678899999987 677899999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 261 VIFFRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 261 ~~YN~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
+.||+++|.+|.+|..|+.+|++.|..+.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 94 CTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998754
No 13
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.93 E-value=1.8e-26 Score=206.19 Aligned_cols=97 Identities=21% Similarity=0.400 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 192 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 192 LlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
|..||..|+.|+.+|+|..||+.. .+|+||+||++||||+||+.||.+|.|.++. +|++||+|||.||++||+++|.
T Consensus 26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 104 (127)
T 2oss_A 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ-ECIQDFNTMFTNCYIYNKPGDD 104 (127)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 446899999999999999999975 8999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008573 270 EYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~l 289 (561)
+|.+|..|+.+|+++|..+.
T Consensus 105 i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 105 IVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999987654
No 14
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=2.8e-26 Score=205.28 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=100.2
Q ss_pred cccccchHHHHHHHHHHhCc-------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 008573 184 VLAVKSEPLVRFLGMIRSHR-------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLL 256 (561)
Q Consensus 184 ~p~~~sepLlkILe~L~shk-------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLI 256 (561)
.+......|..||..|+.+. .+++|..||+...+|+||+||++||||+||+.||.++.|.++. +|.+||+||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN-DLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHH
Confidence 34566778999999999875 6899999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 257 FNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 257 FsNA~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
|.||++||+++|.+|.+|..|+.+|...|..+...
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999987764
No 15
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=201.06 Aligned_cols=104 Identities=28% Similarity=0.382 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHhC------cCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Q 008573 187 VKSEPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 260 (561)
Q Consensus 187 ~~sepLlkILe~L~sh------k~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA 260 (561)
...+.|..||..|..+ +.+++|..||+...+|+||+||++||||+||+.||..+.|.++. +|..||+|||.||
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na 83 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN-LLTADFQLLFNNA 83 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 3456789999999987 46999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 261 VIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 261 ~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
+.||+++|.+|.+|..|+++|++.|..++++
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998753
No 16
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.93 E-value=1.7e-26 Score=207.13 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=95.7
Q ss_pred cccchHHHHHHHHHHhCcC---CccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Q 008573 186 AVKSEPLVRFLGMIRSHRL---SSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 260 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~---S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA 260 (561)
...++.|..||..|+.+++ +|+|..||+.. ++|+||+||++||||+||+.||.++.|.++. +|.+||+|||.||
T Consensus 21 ~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na 99 (130)
T 2ouo_A 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ-EFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 4455679999999998874 89999999986 5999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 261 VIFFRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 261 ~~YN~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
++||+++|.||.+|..|+.+|+.+|..+.
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998754
No 17
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=202.07 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
...|..||..|..++.+++|..||+...+|+||+||++||||+||++||.+|.|.++. +|.+||+|||.||++||+++|
T Consensus 10 ~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Li~~Na~~yN~~~s 88 (117)
T 2i7k_A 10 QEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE-ELKDNFKLMCTNAMIYNKPET 88 (117)
T ss_dssp HHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHH-HHHHHHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3568899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008573 269 QEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~mkk~lp 290 (561)
.+|.+|..|+++|.+.+...+-
T Consensus 89 ~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 89 IYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 18
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=7.7e-26 Score=200.94 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Q 008573 188 KSEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 261 (561)
Q Consensus 188 ~sepLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~ 261 (561)
..+.|..||+.|..+. .+|||..||+...+|+||++|++||||+||+.||.++.|.++. +|..||+|||.||+
T Consensus 10 l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVE-AFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHH
Confidence 3455788888888764 5999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 262 IFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 262 ~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
.||+++|.+|.+|..|+.+|++.|....+.
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=201.48 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=96.6
Q ss_pred cchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCC
Q 008573 188 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 267 (561)
Q Consensus 188 ~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~g 267 (561)
....|..||+.|..|+.+++|..||+...+|+||.||++||||+||+.||.++.|.++. +|..||+|||.||++||+++
T Consensus 14 l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 14 LTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 33458899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Q 008573 268 SQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 268 S~VykaA~~Lr~lfek~mkk~lp 290 (561)
|.+|.+|..|+.+|...|.....
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888654
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=8.9e-26 Score=199.29 Aligned_cols=106 Identities=22% Similarity=0.313 Sum_probs=98.5
Q ss_pred ccccchHHHHHHHHHHhCcC------CccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 008573 185 LAVKSEPLVRFLGMIRSHRL------SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFN 258 (561)
Q Consensus 185 p~~~sepLlkILe~L~shk~------S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFs 258 (561)
+......|..||+.|..+.. +++|..||+...+|+||+||++||||+||+.||..+.|.++. +|+.||+|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIH-AMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHH
Confidence 44555678899999988766 999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 259 NFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 259 NA~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
||++||+++|.+|.+|..|+.+|++.|..+...
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999987653
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=200.03 Aligned_cols=99 Identities=17% Similarity=0.301 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 189 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 189 sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
.+.|..||..|..|+.+++|..||+...+|+||+||++||||+||+.||.+|.|.++. +|..||+|||.||+.||+++|
T Consensus 15 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 93 (123)
T 3hme_A 15 QQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT-EFKADFKLMCDNAMTYNRPDT 93 (123)
T ss_dssp HHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3568899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~mkk~ 288 (561)
.+|.+|..|..+|.+.|.+.
T Consensus 94 ~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 94 VYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=201.44 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=98.6
Q ss_pred ccccchHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 008573 185 LAVKSEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFN 258 (561)
Q Consensus 185 p~~~sepLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFs 258 (561)
.......|..||+.|..+. .++||..||+...+|+||+||++||||+||+.||..+.|.++. +|+.||+|||.
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~ 93 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLD-HLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHH
Confidence 4556677888888888664 4999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 259 NFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 259 NA~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
||++||+++|.||.+|..|+.+|++.|..+...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998765
No 23
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=4.5e-26 Score=200.63 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=97.3
Q ss_pred cccchHHHHHHHHHHhCcC---CccccCCCCccc--CCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Q 008573 186 AVKSEPLVRFLGMIRSHRL---SSHFERRLRSQE--SERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 260 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~---S~pF~ePVd~qe--~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA 260 (561)
....+.|..||..|..++. +|||..||+... +|+||.||++||||+||+.||..+.|.++. +|..||+|||.||
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 86 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNC 86 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHH
Confidence 4556778999999998887 999999999986 999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 261 VIFFRKSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 261 ~~YN~~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
++||+++|.+|.+|..|+.+|++.|..+..
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999987653
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.92 E-value=2.1e-25 Score=207.81 Aligned_cols=103 Identities=15% Similarity=0.258 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcc--cCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~q--e~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
......|..||..|+.|+.+++|..||++. .+|+||.||++||||+||+.||..+.|.++. +|+.||+|||.||++|
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~~y 98 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPS-EFVKDVQLIFDNCSLY 98 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 444467899999999999999999999975 7999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~l 289 (561)
|+++|.||.+|..|+.+|.++|..+.
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 99 NTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998754
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=2.5e-25 Score=205.65 Aligned_cols=101 Identities=21% Similarity=0.424 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
....+.|..||..|..|+.+++|..||+...+|+||+||++||||+||++||.++.|.++. +|++||+|||.||++||+
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLT-EFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 3445679999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTD 287 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk 287 (561)
++|.+|.+|..|+.+|+++|..
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988865
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=4.3e-25 Score=201.36 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHhCc-------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Q 008573 189 SEPLVRFLGMIRSHR-------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 261 (561)
Q Consensus 189 sepLlkILe~L~shk-------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~ 261 (561)
.+.|..||..|..+. .+++|..||+...+|+||+||++||||+||+.||..+.|.++. +|+.||+|||.||+
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEE-GMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 445667777776544 4999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 262 IFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 262 ~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
+||+++|.||.+|..|+.+|.+.|..+.+.
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999998754
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=7.7e-25 Score=202.92 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=90.3
Q ss_pred HHHHHHH-HHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHH
Q 008573 192 LVRFLGM-IRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 270 (561)
Q Consensus 192 LlkILe~-L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~V 270 (561)
|..||.. |..++.+|||..||+...+|+||.||++||||+||+.||..+.|.++. +|+.||+|||.||++||+++|.|
T Consensus 34 L~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~yN~~~s~i 112 (158)
T 3uv4_A 34 LDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQY 112 (158)
T ss_dssp HHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHH
Confidence 4444433 567899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008573 271 YAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 271 ykaA~~Lr~lfek~mkk~lp 290 (561)
|.+|..|..+|.+.|..+..
T Consensus 113 ~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 113 TKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987665
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=3.2e-24 Score=191.95 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 190 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 190 epLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..|..+|..|..|+.+++|..||+...+|+||+||++||||+||+.||..|.|.++. +|+.||+|||.||++||+++|+
T Consensus 13 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s~ 91 (130)
T 3dai_A 13 IFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK-DYLRDIDLICSNALEYNPDRDP 91 (130)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCh
Confidence 457889999999999999999999999999999999999999999999999999999 9999999999999999999987
Q ss_pred H----HHHHHHHHHHHHHHHHHHh
Q 008573 270 E----YAAAQELRTLVIKEMTDML 289 (561)
Q Consensus 270 V----ykaA~~Lr~lfek~mkk~l 289 (561)
+ +.+|..|++.|...|...+
T Consensus 92 ~~~~i~~~A~~L~~~~~~~i~~el 115 (130)
T 3dai_A 92 GDRLIRHRACALRDTAYAIIKEEL 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 6778888888777776433
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.8e-24 Score=201.13 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=97.1
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhC--CCCCCcHHHHHHHHHHHHHHHhhc
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR--GLYSNCFQKFFRDLLLLFNNFVIF 263 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~--G~YsS~~~EF~rDLrLIFsNA~~Y 263 (561)
......|..||..|+.|+.+++|..||+.. +|+||+||++||||+||++||.. +.|.++. +|++||+|||.||++|
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~-ef~~Dv~li~~Na~~y 157 (184)
T 3o36_A 80 PIDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAEF 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 445567999999999999999999999964 99999999999999999999998 7999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 008573 264 FRKSSQEYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 264 N~~gS~VykaA~~Lr~lfek~mkk~lp 290 (561)
|+++|.||.+|..|+.+|+++|..++|
T Consensus 158 N~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 158 NEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999874
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.3e-24 Score=209.50 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=99.8
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|+.|+.+++|..||+...+|+||.||++||||+||+.||..+.|.++. +|+.||+|||.||++||+
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhhhhcCC
Confidence 4566779999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
++|.||.+|..|..+|...|.....+
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999886543
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2.7e-23 Score=198.14 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHHhh
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR---GLYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~---G~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
......|..||..|+.|+.+++|..||+. .+|+||.||++||||+||++||.+ +.|.++. +|++||+|||.||++
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~-~f~~Dv~li~~Na~~ 157 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD-DFVADVRLIFKNCER 157 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHH-HHHHHHHHHHHHHHH
Confidence 34456789999999999999999999987 799999999999999999999997 7999999 999999999999999
Q ss_pred cCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 263 FFR-----------------KSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 263 YN~-----------------~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
||+ +++.++.+|..|+.+|+.+|..++|.
T Consensus 158 yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 158 FNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 99999999999999999999999986
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-23 Score=196.54 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=92.5
Q ss_pred cchHHHHHHHHHHhCcCCccccCCCCcccCCccccccC--CCCCHHHHHHHHhCC---CCCCcHHHHHHHHHHHHHHHhh
Q 008573 188 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVR--QHIDLRTIQSRLDRG---LYSNCFQKFFRDLLLLFNNFVI 262 (561)
Q Consensus 188 ~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK--~PMDLsTIKkKLe~G---~YsS~~~EF~rDLrLIFsNA~~ 262 (561)
....|..||..|+.|+.+|||++||+ |+||.||+ +||||+||++||.++ .|.++. +|++||+|||.||++
T Consensus 77 ~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~-eF~~Dv~Lif~N~~~ 151 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQ-EFAQDVGRMFKQFNK 151 (189)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHH-HHHHHHHHHHHHHHH
Confidence 34568899999999999999999998 78999998 899999999999999 999999 999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 263 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 263 YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
|| +++.+|.+|..|+.+|+++|..+++.
T Consensus 152 yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 152 LT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99 58889999999999999999999876
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.9e-23 Score=183.97 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=90.5
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|..|+.+++|..| +|+||+||++||||+||+.||..+.|.++. +|..||+|||.||++||+
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAK-DFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSH-HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 33445688999999999999999999 899999999999999999999999999999 999999999999999999
Q ss_pred CCCH----HHHHHHHHHHHHHHHHHHHhh
Q 008573 266 KSSQ----EYAAAQELRTLVIKEMTDMLR 290 (561)
Q Consensus 266 ~gS~----VykaA~~Lr~lfek~mkk~lp 290 (561)
++|+ +|.+|..|++.|...|...+.
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9995 578999999999988876664
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=1.3e-22 Score=200.10 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred HHHHHH-HHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHH
Q 008573 192 LVRFLG-MIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 270 (561)
Q Consensus 192 LlkILe-~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~V 270 (561)
|..|+. .|..|+.+|||..||+...+|+||.||++||||+||+.||..|.|.++. +|+.||+|||.||++||+++|.|
T Consensus 141 l~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~lif~Na~~yN~~~s~~ 219 (265)
T 3uv5_A 141 LDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQY 219 (265)
T ss_dssp HHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHH
Confidence 444443 3678899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008573 271 YAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 271 ykaA~~Lr~lfek~mkk~lpk 291 (561)
|.+|..|..+|.+.|..+...
T Consensus 220 ~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 220 TKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886653
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.2e-22 Score=203.52 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=96.0
Q ss_pred cccchHHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 008573 186 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 265 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~ 265 (561)
......|..||..|+.|+.+|+|..||+...+|+||+||++||||+||+.||+++.|.++. +|..||.|||.||++||+
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~ 124 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNG 124 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHH-HHHHHHHHHHHHHHHHcC
Confidence 3445678899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 008573 266 KSSQEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 266 ~gS~VykaA~~Lr~lfek~mkk~ 288 (561)
++|.+|.+|..|..+|.+.|...
T Consensus 125 ~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 125 PKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp SSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999998877654
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=4.3e-22 Score=199.50 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=88.4
Q ss_pred HHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 008573 198 MIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQEL 277 (561)
Q Consensus 198 ~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~L 277 (561)
.|+.|..+|+|..||+...+|+||+||++||||+||+.||..|.|.++. +|..||+|||.||+.||+++|.+|.+|..|
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L 259 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQEI 259 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 008573 278 RTLVIKEMTDMLRK 291 (561)
Q Consensus 278 r~lfek~mkk~lpk 291 (561)
+.+|...|..+...
T Consensus 260 ~~~~~~~~~~~~~~ 273 (292)
T 3aad_A 260 VNVCYQTLTEYDEH 273 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=5e-22 Score=204.33 Aligned_cols=87 Identities=26% Similarity=0.401 Sum_probs=84.2
Q ss_pred hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 008573 201 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 280 (561)
Q Consensus 201 shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~l 280 (561)
.|..+|+|+.||+...+|+||+||++||||+||+.||..+.|.++. +|+.||+|||.||++||+++|.||.+|..|+.+
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008573 281 VIKEMTDM 288 (561)
Q Consensus 281 fek~mkk~ 288 (561)
|+..|...
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999883
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.86 E-value=4.7e-22 Score=201.34 Aligned_cols=87 Identities=26% Similarity=0.401 Sum_probs=84.5
Q ss_pred hCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 008573 201 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 280 (561)
Q Consensus 201 shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~VykaA~~Lr~l 280 (561)
.|+.+|+|+.||+...+|+||+||++||||+||++||.++.|.++. +|..||+|||.||++||+++|.||.+|..|+.+
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008573 281 VIKEMTDM 288 (561)
Q Consensus 281 fek~mkk~ 288 (561)
|+.+|.+.
T Consensus 256 f~~~~~~~ 263 (311)
T 2r0y_A 256 FNYLIQKE 263 (311)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999884
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=2.7e-20 Score=191.48 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=83.6
Q ss_pred HHHHHHHHHh--CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHHhhcCCCCC
Q 008573 192 LVRFLGMIRS--HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYS-NCFQKFFRDLLLLFNNFVIFFRKSS 268 (561)
Q Consensus 192 LlkILe~L~s--hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~Ys-S~~~EF~rDLrLIFsNA~~YN~~gS 268 (561)
|..+|+.|.. ..++++|..||+...+||||+||++||||+||+.|| +.|. ++. +|+.||+|||.||++||.++|
T Consensus 83 ~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~-~f~~D~~li~~Na~~yN~~~s 159 (361)
T 2r10_A 83 ISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYDS 159 (361)
T ss_dssp HHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHH-HHHHHHHHHHHHHHHHBCSSS
T ss_pred HHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHH-HHHHHHHHHHHHHhhcCCCCC
Confidence 4556666643 356899999999999999999999999999999999 4554 788 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008573 269 QEYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 269 ~VykaA~~Lr~lfek~mkk~ 288 (561)
.||.+|..|+.+|+++|.+.
T Consensus 160 ~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 160 LIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998874
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.79 E-value=7.7e-20 Score=185.20 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHHHh--CcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHHhhcCCCCCH
Q 008573 193 VRFLGMIRS--HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYS-NCFQKFFRDLLLLFNNFVIFFRKSSQ 269 (561)
Q Consensus 193 lkILe~L~s--hk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~Ys-S~~~EF~rDLrLIFsNA~~YN~~gS~ 269 (561)
..+|..+.. +.++++|..||+...+||||+||++||||+||++|| ..|. ++. +|+.||+|||.||++||.++|.
T Consensus 34 ~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~-~f~~D~~li~~Na~~yN~~~s~ 110 (311)
T 2r0y_A 34 SFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYDSL 110 (311)
T ss_dssp HHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHH-HHHHHHHHHHHHHHHccCCCCH
Confidence 344444432 357999999999999999999999999999999999 5555 788 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008573 270 EYAAAQELRTLVIKEMTDM 288 (561)
Q Consensus 270 VykaA~~Lr~lfek~mkk~ 288 (561)
||.+|..|+.+|.++|.+.
T Consensus 111 i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 111 IVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=150.57 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=92.2
Q ss_pred cccchHHHHHHHHHHhCc------CCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 008573 186 AVKSEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNN 259 (561)
Q Consensus 186 ~~~sepLlkILe~L~shk------~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsN 259 (561)
....+.|..||..|..|. .+.+|...++.. |+||. ++||+|.+|++||..|.|.++. +|..||.|||.|
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld-~f~~D~~lmf~N 80 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLD-LFQEHMFEVLER 80 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHH
Confidence 344456788899998774 579999998887 78998 9999999999999999999999 999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008573 260 FVIFFRKSSQEYAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 260 A~~YN~~gS~VykaA~~Lr~lfek~mkk~lpk 291 (561)
|++||.++|.||.+|..|+.+|...+..+...
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998775
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.55 E-value=5.9e-15 Score=140.34 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCcCCccccCCCCcccCCccccccCCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhcCCCCCHH
Q 008573 191 PLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 270 (561)
Q Consensus 191 pLlkILe~L~shk~S~pF~ePVd~qe~PDYydIIK~PMDLsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA~~YN~~gS~V 270 (561)
-|..||..|..|+.++||+.. .++.||||.||++||+.|.|.++. +|+.||.|||.||+.||...+.+
T Consensus 79 ~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~-eF~~Dv~lIf~n~~~~~~~~~e~ 146 (183)
T 3lqh_A 79 SLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVL-EFSDDIVKIIQAAINSDGGQPEI 146 (183)
T ss_dssp HHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHhhccCCChhh
Confidence 378999999999999999883 259999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008573 271 YAAAQELRTLVIKEMTDMLRK 291 (561)
Q Consensus 271 ykaA~~Lr~lfek~mkk~lpk 291 (561)
..++..|+.+|.++|.+++|.
T Consensus 147 ~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 147 KKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHCCC
Confidence 999999999999999999996
No 43
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=26.55 E-value=63 Score=27.24 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Q 008573 230 LRTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 260 (561)
Q Consensus 230 LsTIKkKLe~G~YsS~~~EF~rDLrLIFsNA 260 (561)
...|...|..|.|.|.. ++++|+..++..-
T Consensus 15 ~~~i~~~V~sG~Y~s~S-EviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSAS-EVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 35788999999999999 9999988887764
No 44
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=24.73 E-value=31 Score=23.12 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=11.7
Q ss_pred HhhhcHHHHHHHHhh
Q 008573 434 KKKLGAASFLKRMKQ 448 (561)
Q Consensus 434 ~kk~~aa~flkr~k~ 448 (561)
-||..--||+||+|-
T Consensus 8 ekKinfndFIKRLK~ 22 (24)
T 3si5_X 8 ENKIDFNDFIKRLKT 22 (26)
T ss_pred hhhccHHHHHHHHhc
Confidence 355588999999983
Done!