Query 008574
Match_columns 561
No_of_seqs 231 out of 281
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 13:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 99.6 3.2E-16 7E-21 173.7 5.5 57 99-157 436-500 (1102)
2 KOG1924 RhoA GTPase effector D 98.5 8E-07 1.7E-11 100.5 10.9 31 269-299 582-619 (1102)
3 PF05308 Mito_fiss_reg: Mitoch 97.6 0.00049 1.1E-08 70.3 11.5 18 177-194 126-143 (253)
4 PF06005 DUF904: Protein of un 94.8 0.33 7.2E-06 41.2 9.6 63 132-194 5-67 (72)
5 KOG2391 Vacuolar sorting prote 93.7 4.5 9.8E-05 43.6 17.4 19 204-222 120-138 (365)
6 PRK13729 conjugal transfer pil 92.8 1.9 4.2E-05 48.1 13.6 53 137-189 68-120 (475)
7 KOG2675 Adenylate cyclase-asso 92.5 0.12 2.6E-06 56.7 3.9 13 285-297 262-274 (480)
8 PF08826 DMPK_coil: DMPK coile 91.9 2 4.3E-05 35.6 9.5 60 135-194 1-60 (61)
9 COG4026 Uncharacterized protei 91.3 1.2 2.5E-05 45.8 9.0 75 122-196 125-200 (290)
10 PRK15319 AIDA autotransporter- 91.3 0.21 4.5E-06 62.6 4.5 10 509-518 1916-1925(2039)
11 KOG3671 Actin regulatory prote 91.2 0.44 9.5E-06 53.2 6.4 6 330-335 497-502 (569)
12 PF01213 CAP_N: Adenylate cycl 89.8 0.096 2.1E-06 55.3 0.0 13 284-296 259-271 (312)
13 KOG2675 Adenylate cyclase-asso 89.7 0.23 5.1E-06 54.5 2.8 16 278-293 259-274 (480)
14 PF05308 Mito_fiss_reg: Mitoch 89.7 2.6 5.6E-05 43.6 10.2 40 288-327 210-249 (253)
15 PRK15422 septal ring assembly 88.8 4.2 9.1E-05 35.4 9.2 61 133-193 6-73 (79)
16 PF06637 PV-1: PV-1 protein (P 88.7 5.3 0.00012 43.7 11.9 6 288-293 419-424 (442)
17 PRK13729 conjugal transfer pil 88.4 3.2 6.9E-05 46.4 10.4 22 471-492 363-384 (475)
18 PF06156 DUF972: Protein of un 87.6 3.5 7.5E-05 37.5 8.4 54 134-187 4-57 (107)
19 PF05667 DUF812: Protein of un 87.0 67 0.0014 37.3 20.6 98 286-396 423-529 (594)
20 PF07106 TBPIP: Tat binding pr 86.3 6.8 0.00015 37.3 10.1 62 133-194 74-137 (169)
21 KOG1925 Rac1 GTPase effector F 86.0 0.76 1.7E-05 51.6 3.9 15 432-446 584-598 (817)
22 PRK09752 adhesin; Provisional 85.9 0.63 1.4E-05 56.6 3.5 11 455-465 1101-1111(1250)
23 PRK13169 DNA replication intia 85.4 5.1 0.00011 36.8 8.3 52 134-185 4-55 (110)
24 KOG3997 Major apurinic/apyrimi 85.2 2.2 4.9E-05 43.8 6.5 90 457-546 98-205 (281)
25 COG5178 PRP8 U5 snRNP spliceos 85.2 0.68 1.5E-05 56.1 3.2 17 511-527 266-282 (2365)
26 PHA03211 serine/threonine kina 84.7 1 2.2E-05 49.5 4.2 18 424-441 257-274 (461)
27 PRK10884 SH3 domain-containing 84.3 5.1 0.00011 40.2 8.5 43 154-196 120-162 (206)
28 PF00769 ERM: Ezrin/radixin/mo 82.1 4 8.8E-05 41.7 7.0 62 132-193 34-95 (246)
29 PF02183 HALZ: Homeobox associ 81.7 5 0.00011 31.3 5.8 41 149-189 2-42 (45)
30 COG3883 Uncharacterized protei 81.1 11 0.00023 39.6 9.6 55 139-193 39-93 (265)
31 PF07888 CALCOCO1: Calcium bin 81.1 8.5 0.00018 43.9 9.6 68 10-82 9-87 (546)
32 PRK11637 AmiB activator; Provi 81.1 18 0.00039 39.3 11.9 59 131-189 47-105 (428)
33 PF11932 DUF3450: Protein of u 80.7 10 0.00023 38.3 9.4 62 133-194 37-98 (251)
34 PF01213 CAP_N: Adenylate cycl 80.1 0.68 1.5E-05 49.1 0.7 8 335-342 282-289 (312)
35 TIGR02894 DNA_bind_RsfA transc 80.0 9.3 0.0002 37.3 8.2 60 135-194 87-146 (161)
36 TIGR02449 conserved hypothetic 79.5 20 0.00044 30.2 9.0 54 134-187 3-56 (65)
37 COG3074 Uncharacterized protei 79.5 20 0.00043 31.0 8.9 52 132-183 5-63 (79)
38 KOG1830 Wiskott Aldrich syndro 79.2 5.3 0.00012 44.2 7.0 15 313-327 451-465 (518)
39 PF12718 Tropomyosin_1: Tropom 78.1 33 0.00073 32.5 11.2 57 133-189 9-65 (143)
40 PF14197 Cep57_CLD_2: Centroso 77.9 29 0.00063 29.3 9.6 61 131-191 5-65 (69)
41 PF09304 Cortex-I_coil: Cortex 77.6 25 0.00055 32.3 9.7 66 131-196 9-74 (107)
42 PRK11637 AmiB activator; Provi 77.5 24 0.00052 38.4 11.5 60 134-193 57-116 (428)
43 PF08172 CASP_C: CASP C termin 77.5 19 0.00042 37.1 10.2 76 131-215 6-133 (248)
44 KOG2264 Exostosin EXT1L [Signa 77.3 11 0.00024 43.4 8.8 68 131-198 86-153 (907)
45 PF10146 zf-C4H2: Zinc finger- 77.1 45 0.00098 34.2 12.6 36 131-166 15-53 (230)
46 PF08614 ATG16: Autophagy prot 77.0 22 0.00048 34.8 10.1 54 140-193 118-171 (194)
47 COG5185 HEC1 Protein involved 76.3 1.5E+02 0.0032 34.0 21.2 89 321-435 474-562 (622)
48 PRK10884 SH3 domain-containing 76.3 20 0.00043 36.1 9.6 47 148-194 121-167 (206)
49 KOG0933 Structural maintenance 74.3 2.1E+02 0.0045 35.6 18.4 114 330-445 857-982 (1174)
50 PF04111 APG6: Autophagy prote 73.7 23 0.00049 37.6 9.8 47 147-193 45-91 (314)
51 PF15195 TMEM210: TMEM210 fami 73.6 2.3 4.9E-05 38.5 2.0 11 261-271 105-115 (116)
52 KOG3671 Actin regulatory prote 73.4 5.7 0.00012 44.8 5.4 6 320-325 497-502 (569)
53 PF15358 TSKS: Testis-specific 72.8 1E+02 0.0023 34.6 14.5 43 134-176 128-170 (558)
54 PRK09039 hypothetical protein; 72.4 35 0.00075 36.7 10.9 61 132-192 117-177 (343)
55 COG3883 Uncharacterized protei 72.0 20 0.00044 37.5 8.8 64 130-193 37-100 (265)
56 KOG3397 Acetyltransferases [Ge 71.9 5.8 0.00013 39.6 4.6 10 94-103 88-97 (225)
57 PF11544 Spc42p: Spindle pole 71.9 45 0.00097 29.1 9.3 50 131-180 5-54 (76)
58 PF07111 HCR: Alpha helical co 71.7 68 0.0015 37.9 13.5 44 131-174 521-564 (739)
59 PF10226 DUF2216: Uncharacteri 70.7 54 0.0012 33.1 10.9 49 132-180 17-76 (195)
60 PF00170 bZIP_1: bZIP transcri 70.6 18 0.00039 29.3 6.5 36 152-187 26-61 (64)
61 PF10473 CENP-F_leu_zip: Leuci 70.0 84 0.0018 30.1 11.7 44 152-195 59-102 (140)
62 PF01690 PLRV_ORF5: Potato lea 69.4 3.7 7.9E-05 45.8 2.9 23 360-382 208-235 (465)
63 PF08614 ATG16: Autophagy prot 69.4 34 0.00073 33.5 9.3 64 132-195 103-166 (194)
64 PF07106 TBPIP: Tat binding pr 69.4 20 0.00044 34.1 7.6 60 130-189 78-139 (169)
65 PF06005 DUF904: Protein of un 69.3 50 0.0011 28.2 9.1 37 152-188 18-54 (72)
66 KOG3270 Uncharacterized conser 69.1 29 0.00063 36.1 9.0 31 159-189 115-145 (244)
67 PF08317 Spc7: Spc7 kinetochor 68.5 38 0.00081 35.9 10.1 37 153-189 210-246 (325)
68 KOG1962 B-cell receptor-associ 68.1 21 0.00045 36.5 7.7 59 136-194 149-207 (216)
69 PF10224 DUF2205: Predicted co 68.1 22 0.00047 31.1 6.7 42 146-187 24-65 (80)
70 smart00338 BRLZ basic region l 67.5 25 0.00054 28.5 6.7 16 174-189 41-56 (65)
71 PHA02562 46 endonuclease subun 67.3 33 0.00072 37.9 9.8 11 134-144 309-319 (562)
72 KOG2211 Predicted Golgi transp 67.2 34 0.00074 40.2 9.9 45 285-336 400-444 (797)
73 COG4026 Uncharacterized protei 66.5 27 0.00059 36.2 8.1 45 149-193 139-183 (290)
74 PF04899 MbeD_MobD: MbeD/MobD 66.4 73 0.0016 27.2 9.4 61 135-195 3-64 (70)
75 PF04880 NUDE_C: NUDE protein, 66.4 8.9 0.00019 37.6 4.5 45 134-182 3-47 (166)
76 PF06156 DUF972: Protein of un 66.3 46 0.00099 30.4 8.8 49 146-194 9-57 (107)
77 PF09744 Jnk-SapK_ap_N: JNK_SA 66.1 52 0.0011 32.0 9.6 39 156-194 86-124 (158)
78 PF05667 DUF812: Protein of un 66.1 2.6E+02 0.0057 32.6 16.8 56 130-185 327-382 (594)
79 KOG0804 Cytoplasmic Zn-finger 66.0 47 0.001 37.4 10.3 23 157-179 387-409 (493)
80 TIGR03185 DNA_S_dndD DNA sulfu 65.8 44 0.00094 38.5 10.6 46 148-193 424-469 (650)
81 PF14282 FlxA: FlxA-like prote 65.6 33 0.00072 30.9 7.7 50 145-194 19-72 (106)
82 PF15003 HAUS2: HAUS augmin-li 65.5 97 0.0021 32.9 12.1 60 395-455 136-198 (277)
83 PHA03247 large tegument protei 65.4 10 0.00022 50.0 5.8 27 431-457 3109-3135(3151)
84 PF00170 bZIP_1: bZIP transcri 65.0 56 0.0012 26.4 8.3 35 159-193 26-60 (64)
85 PHA02562 46 endonuclease subun 64.8 2.3E+02 0.005 31.4 20.1 61 133-193 176-247 (562)
86 PF10146 zf-C4H2: Zinc finger- 64.5 1.8E+02 0.0038 30.0 14.0 22 134-155 4-25 (230)
87 PF00038 Filament: Intermediat 64.1 80 0.0017 32.5 11.3 35 131-165 54-88 (312)
88 PRK13169 DNA replication intia 63.4 64 0.0014 29.7 9.2 48 146-193 9-56 (110)
89 PF07888 CALCOCO1: Calcium bin 63.2 59 0.0013 37.4 10.7 39 377-416 340-381 (546)
90 PF15290 Syntaphilin: Golgi-lo 63.1 62 0.0014 34.5 10.1 32 134-165 71-102 (305)
91 PRK10803 tol-pal system protei 61.9 52 0.0011 34.0 9.4 45 134-178 43-87 (263)
92 KOG1922 Rho GTPase effector BN 61.8 11 0.00025 44.3 5.2 29 411-439 668-696 (833)
93 PF10473 CENP-F_leu_zip: Leuci 61.5 1.1E+02 0.0024 29.3 10.7 36 132-167 53-88 (140)
94 PF11068 YlqD: YlqD protein; 61.4 58 0.0012 30.8 8.7 72 122-193 11-87 (131)
95 PF09726 Macoilin: Transmembra 60.7 45 0.00097 39.3 9.6 33 164-196 543-575 (697)
96 PF04156 IncA: IncA protein; 60.7 1.1E+02 0.0023 29.4 10.7 63 131-193 88-150 (191)
97 PHA03247 large tegument protei 60.7 14 0.0003 48.8 5.9 7 484-490 3098-3104(3151)
98 KOG4571 Activating transcripti 60.1 23 0.0005 37.6 6.5 28 152-179 255-282 (294)
99 KOG0946 ER-Golgi vesicle-tethe 60.0 95 0.0021 37.5 11.8 51 146-196 665-715 (970)
100 PF11932 DUF3450: Protein of u 59.7 86 0.0019 31.8 10.4 48 148-195 45-92 (251)
101 KOG1853 LIS1-interacting prote 59.4 2.3E+02 0.0051 30.1 13.3 43 153-195 106-155 (333)
102 PF00038 Filament: Intermediat 59.3 1.5E+02 0.0032 30.6 12.2 28 151-178 222-249 (312)
103 PF12329 TMF_DNA_bd: TATA elem 58.8 87 0.0019 26.6 8.6 24 136-159 3-26 (74)
104 COG1084 Predicted GTPase [Gene 58.7 43 0.00093 36.4 8.3 86 357-452 68-156 (346)
105 PF04111 APG6: Autophagy prote 58.3 81 0.0018 33.5 10.3 44 134-177 46-89 (314)
106 PF02183 HALZ: Homeobox associ 58.2 44 0.00096 26.1 6.2 39 144-182 4-42 (45)
107 COG4942 Membrane-bound metallo 57.9 65 0.0014 35.9 9.7 63 131-193 45-107 (420)
108 COG2433 Uncharacterized conser 57.8 70 0.0015 37.3 10.1 44 130-173 421-464 (652)
109 KOG1830 Wiskott Aldrich syndro 57.7 22 0.00047 39.7 6.0 10 283-292 369-378 (518)
110 PRK00888 ftsB cell division pr 57.6 34 0.00074 30.9 6.4 33 147-179 29-61 (105)
111 KOG0964 Structural maintenance 57.4 51 0.0011 40.3 9.3 71 121-193 670-740 (1200)
112 PF10267 Tmemb_cc2: Predicted 57.3 85 0.0019 34.8 10.5 34 179-218 275-309 (395)
113 PF11559 ADIP: Afadin- and alp 57.1 1.6E+02 0.0035 27.4 11.1 63 131-193 38-107 (151)
114 PRK14950 DNA polymerase III su 56.9 45 0.00098 38.1 8.7 33 317-352 459-491 (585)
115 PF10805 DUF2730: Protein of u 56.7 82 0.0018 28.4 8.6 59 131-189 35-95 (106)
116 PF09755 DUF2046: Uncharacteri 56.6 1.2E+02 0.0027 32.6 11.1 37 131-167 91-128 (310)
117 smart00338 BRLZ basic region l 56.5 1.1E+02 0.0023 24.8 9.2 36 154-189 28-63 (65)
118 PF03962 Mnd1: Mnd1 family; I 56.3 90 0.0019 30.9 9.6 26 332-357 71-96 (188)
119 smart00787 Spc7 Spc7 kinetocho 56.1 80 0.0017 33.7 9.8 9 133-141 181-189 (312)
120 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.0 1.2E+02 0.0026 28.1 9.8 12 181-192 106-117 (132)
121 PRK10803 tol-pal system protei 55.5 2.6E+02 0.0055 29.0 17.9 47 148-194 43-89 (263)
122 PHA03211 serine/threonine kina 55.0 16 0.00034 40.3 4.5 7 468-474 301-307 (461)
123 KOG0559 Dihydrolipoamide succi 54.9 32 0.0007 37.8 6.7 33 319-351 260-292 (457)
124 KOG2129 Uncharacterized conser 54.4 3.7E+02 0.008 30.5 14.5 20 136-155 251-270 (552)
125 PF14662 CCDC155: Coiled-coil 54.0 1.8E+02 0.0039 29.5 11.2 25 330-354 158-182 (193)
126 PF15290 Syntaphilin: Golgi-lo 53.8 1E+02 0.0022 32.9 9.9 59 131-189 75-140 (305)
127 PF12325 TMF_TATA_bd: TATA ele 53.4 1.2E+02 0.0026 28.2 9.4 28 133-160 18-45 (120)
128 PF13851 GAS: Growth-arrest sp 53.4 56 0.0012 32.6 7.7 55 140-194 22-76 (201)
129 KOG4590 Signal transduction pr 53.2 41 0.00089 37.4 7.3 52 139-191 46-102 (409)
130 PF05278 PEARLI-4: Arabidopsis 53.2 1.1E+02 0.0025 32.3 10.1 53 354-418 144-198 (269)
131 COG1579 Zn-ribbon protein, pos 53.0 1.2E+02 0.0026 31.5 10.1 14 285-298 174-187 (239)
132 PF10152 DUF2360: Predicted co 52.5 1.7E+02 0.0036 27.9 10.4 23 169-191 24-46 (148)
133 PF14688 DUF4461: Domain of un 52.1 26 0.00056 37.3 5.4 50 392-441 222-281 (313)
134 KOG4005 Transcription factor X 52.0 77 0.0017 33.2 8.5 52 143-194 95-146 (292)
135 PF09766 FimP: Fms-interacting 51.9 1.3E+02 0.0028 32.6 10.7 57 130-193 86-142 (355)
136 PRK04406 hypothetical protein; 51.8 1.3E+02 0.0028 25.9 8.5 9 181-189 47-55 (75)
137 PF07462 MSP1_C: Merozoite sur 51.6 55 0.0012 37.6 8.0 45 318-364 362-406 (574)
138 KOG0996 Structural maintenance 51.3 1.1E+02 0.0024 38.3 10.8 65 131-195 521-585 (1293)
139 PF12325 TMF_TATA_bd: TATA ele 50.9 1.4E+02 0.0031 27.7 9.4 27 147-173 25-51 (120)
140 KOG4005 Transcription factor X 50.6 90 0.0019 32.7 8.7 38 150-187 109-146 (292)
141 KOG1853 LIS1-interacting prote 50.4 1.4E+02 0.0031 31.6 10.2 21 158-178 51-71 (333)
142 PF10481 CENP-F_N: Cenp-F N-te 50.1 66 0.0014 34.2 7.8 44 154-197 62-105 (307)
143 PF11559 ADIP: Afadin- and alp 50.0 1.8E+02 0.0038 27.2 10.1 35 131-165 52-86 (151)
144 KOG0288 WD40 repeat protein Ti 49.9 1.7E+02 0.0038 32.8 11.2 59 131-189 13-71 (459)
145 PF01166 TSC22: TSC-22/dip/bun 49.8 28 0.00061 28.9 4.1 29 152-180 14-42 (59)
146 PF07200 Mod_r: Modifier of ru 49.8 1.5E+02 0.0032 27.6 9.5 55 140-194 22-76 (150)
147 PF10883 DUF2681: Protein of u 49.7 53 0.0012 29.2 6.1 35 162-196 26-60 (87)
148 PF06810 Phage_GP20: Phage min 49.6 1.1E+02 0.0024 29.5 8.7 48 136-183 18-68 (155)
149 KOG3119 Basic region leucine z 49.3 81 0.0018 32.8 8.4 36 159-194 215-250 (269)
150 PRK09039 hypothetical protein; 49.3 72 0.0016 34.3 8.3 41 154-194 118-158 (343)
151 KOG4196 bZIP transcription fac 49.2 45 0.00098 31.8 5.9 27 167-193 75-101 (135)
152 PF09730 BicD: Microtubule-ass 49.1 1.3E+02 0.0028 35.8 10.8 61 134-194 30-90 (717)
153 PF11408 Helicase_Sgs1: Sgs1 R 49.1 23 0.00049 31.0 3.7 63 398-461 2-67 (80)
154 PF08006 DUF1700: Protein of u 48.0 35 0.00075 32.8 5.2 59 342-400 3-62 (181)
155 PF04859 DUF641: Plant protein 47.4 60 0.0013 30.8 6.5 50 131-180 80-129 (131)
156 smart00787 Spc7 Spc7 kinetocho 47.3 2.5E+02 0.0055 30.0 11.8 36 136-171 163-198 (312)
157 KOG0250 DNA repair protein RAD 47.2 1.3E+02 0.0029 37.2 10.6 134 331-465 704-859 (1074)
158 KOG4673 Transcription factor T 45.8 6.2E+02 0.014 30.6 22.0 56 318-384 843-898 (961)
159 KOG0162 Myosin class I heavy c 45.7 26 0.00057 41.6 4.5 9 68-76 730-738 (1106)
160 PRK10781 rcsF outer membrane l 45.6 20 0.00044 34.0 3.1 6 288-293 49-54 (133)
161 PF02403 Seryl_tRNA_N: Seryl-t 45.5 1.3E+02 0.0028 26.4 8.0 16 174-189 75-90 (108)
162 PF05700 BCAS2: Breast carcino 45.5 1.7E+02 0.0038 29.4 9.8 9 132-140 121-129 (221)
163 PF04899 MbeD_MobD: MbeD/MobD 44.9 2E+02 0.0043 24.6 8.6 46 148-193 24-69 (70)
164 PRK13855 type IV secretion sys 44.7 38 0.00082 37.2 5.3 9 279-287 108-116 (376)
165 TIGR02449 conserved hypothetic 44.5 2E+02 0.0043 24.4 8.4 41 152-192 14-54 (65)
166 PF07307 HEPPP_synt_1: Heptapr 44.3 1.3E+02 0.0029 30.6 8.8 99 320-433 85-183 (212)
167 CHL00172 cpeB phycoerythrin be 44.3 3.4E+02 0.0074 27.1 11.5 29 455-485 114-142 (177)
168 KOG4603 TBP-1 interacting prot 44.3 1.8E+02 0.004 29.2 9.4 80 139-218 87-177 (201)
169 PF12777 MT: Microtubule-bindi 44.0 1.8E+02 0.0039 31.1 10.2 61 134-194 231-291 (344)
170 TIGR00570 cdk7 CDK-activating 43.9 2.7E+02 0.0059 30.0 11.4 24 150-173 118-141 (309)
171 KOG4571 Activating transcripti 43.6 1.6E+02 0.0035 31.5 9.5 48 142-189 238-285 (294)
172 PF13851 GAS: Growth-arrest sp 43.5 2.8E+02 0.006 27.7 10.8 32 152-183 48-79 (201)
173 KOG0964 Structural maintenance 43.2 1.5E+02 0.0032 36.7 10.1 87 130-218 396-485 (1200)
174 KOG4010 Coiled-coil protein TP 42.9 54 0.0012 33.1 5.7 28 168-195 53-80 (208)
175 PF04977 DivIC: Septum formati 42.7 69 0.0015 26.1 5.5 28 149-176 21-48 (80)
176 KOG0709 CREB/ATF family transc 42.4 42 0.00091 37.8 5.3 47 146-192 273-319 (472)
177 PRK03918 chromosome segregatio 42.3 1.9E+02 0.0042 34.0 11.1 15 526-540 822-836 (880)
178 PF13094 CENP-Q: CENP-Q, a CEN 42.3 1.7E+02 0.0036 27.7 8.7 46 131-176 27-72 (160)
179 PF04102 SlyX: SlyX; InterPro 42.2 1.4E+02 0.0031 24.8 7.3 16 134-149 7-22 (69)
180 PRK00888 ftsB cell division pr 41.7 1.7E+02 0.0037 26.4 8.3 34 153-186 28-61 (105)
181 PF01698 FLO_LFY: Floricaula / 41.7 8.7 0.00019 42.1 0.0 10 510-519 280-289 (386)
182 PF02899 Phage_int_SAM_1: Phag 41.5 50 0.0011 26.6 4.5 53 339-391 23-80 (84)
183 KOG0161 Myosin class II heavy 41.4 2.1E+02 0.0045 37.9 11.7 65 132-196 1450-1514(1930)
184 PF12718 Tropomyosin_1: Tropom 41.3 2.6E+02 0.0056 26.6 9.8 45 120-166 12-56 (143)
185 PF05565 Sipho_Gp157: Siphovir 40.9 1.7E+02 0.0038 28.0 8.7 52 131-182 33-84 (162)
186 PF00261 Tropomyosin: Tropomyo 40.6 3.3E+02 0.0071 27.5 11.0 8 144-151 140-147 (237)
187 PF12329 TMF_DNA_bd: TATA elem 40.4 1.3E+02 0.0028 25.6 6.9 35 159-193 33-67 (74)
188 PF07798 DUF1640: Protein of u 40.3 2.8E+02 0.0061 26.8 10.1 45 134-178 47-92 (177)
189 PF04949 Transcrip_act: Transc 40.3 3.7E+02 0.008 26.5 10.6 48 131-178 84-131 (159)
190 KOG0243 Kinesin-like protein [ 40.2 2E+02 0.0043 35.7 10.7 8 49-56 382-389 (1041)
191 PF05278 PEARLI-4: Arabidopsis 40.1 3.1E+02 0.0067 29.1 10.9 44 150-193 198-241 (269)
192 PRK09841 cryptic autophosphory 40.1 2.7E+02 0.0058 32.8 11.7 32 136-167 258-289 (726)
193 PRK15313 autotransport protein 39.9 37 0.00079 41.3 4.6 8 511-518 830-837 (955)
194 COG1579 Zn-ribbon protein, pos 39.5 2.1E+02 0.0045 29.8 9.4 37 154-190 91-127 (239)
195 PF10186 Atg14: UV radiation r 39.2 3.4E+02 0.0073 27.2 10.9 20 389-408 276-295 (302)
196 PF12037 DUF3523: Domain of un 39.1 3.7E+02 0.0079 28.7 11.3 57 391-453 80-151 (276)
197 KOG2236 Uncharacterized conser 38.9 35 0.00076 38.4 4.0 9 69-77 183-191 (483)
198 PF09304 Cortex-I_coil: Cortex 38.6 2.3E+02 0.005 26.3 8.6 26 168-193 39-64 (107)
199 PF09730 BicD: Microtubule-ass 38.5 2.3E+02 0.005 33.9 10.7 26 395-420 362-387 (717)
200 PF06657 Cep57_MT_bd: Centroso 38.4 1.9E+02 0.0041 25.0 7.6 48 146-193 18-77 (79)
201 COG4942 Membrane-bound metallo 38.2 2.6E+02 0.0056 31.4 10.5 32 317-348 158-189 (420)
202 COG4985 ABC-type phosphate tra 38.1 1.3E+02 0.0028 31.6 7.6 118 81-211 107-253 (289)
203 COG1340 Uncharacterized archae 38.1 3.9E+02 0.0085 28.7 11.4 9 132-140 139-147 (294)
204 PF07889 DUF1664: Protein of u 37.8 2.6E+02 0.0056 26.4 9.0 62 134-195 50-111 (126)
205 KOG2129 Uncharacterized conser 37.8 2.4E+02 0.0051 32.0 10.0 13 207-219 205-217 (552)
206 KOG2264 Exostosin EXT1L [Signa 37.8 2E+02 0.0042 33.8 9.6 62 132-193 80-141 (907)
207 PF09278 MerR-DNA-bind: MerR, 37.7 81 0.0018 24.9 5.0 45 408-453 17-61 (65)
208 KOG1899 LAR transmembrane tyro 37.6 6E+02 0.013 30.4 13.4 180 130-315 194-440 (861)
209 KOG4797 Transcriptional regula 37.6 1.9E+02 0.0041 27.1 7.8 45 135-179 49-94 (123)
210 PF10224 DUF2205: Predicted co 37.4 2.3E+02 0.005 24.8 8.0 49 145-193 16-64 (80)
211 PF09726 Macoilin: Transmembra 37.3 1.4E+02 0.003 35.4 8.8 36 157-192 458-493 (697)
212 PF07304 SRA1: Steroid recepto 37.2 73 0.0016 30.7 5.5 9 334-342 65-73 (157)
213 PF12312 NeA_P2: Nepovirus sub 36.8 20 0.00044 36.4 1.7 6 264-269 203-208 (258)
214 COG2433 Uncharacterized conser 36.7 2.5E+02 0.0054 33.1 10.3 20 20-39 302-322 (652)
215 PF00261 Tropomyosin: Tropomyo 36.5 2.2E+02 0.0049 28.7 9.1 45 152-196 120-164 (237)
216 PRK02119 hypothetical protein; 36.5 2.7E+02 0.0058 23.7 8.3 11 134-144 12-22 (73)
217 PF09738 DUF2051: Double stran 36.5 1.9E+02 0.0042 30.9 8.9 63 131-193 84-153 (302)
218 KOG3304 Surfeit family protein 36.3 4.1E+02 0.0089 25.7 11.5 78 377-457 47-132 (148)
219 PLN03132 NADH dehydrogenase (u 36.1 18 0.00039 40.6 1.4 16 478-493 358-373 (461)
220 KOG4603 TBP-1 interacting prot 36.0 3.1E+02 0.0068 27.6 9.6 53 130-182 85-139 (201)
221 PF05377 FlaC_arch: Flagella a 35.9 1.5E+02 0.0033 24.4 6.3 27 150-176 12-38 (55)
222 PF14197 Cep57_CLD_2: Centroso 35.9 2.4E+02 0.0051 23.9 7.7 50 145-194 5-54 (69)
223 COG4467 Regulator of replicati 35.5 2E+02 0.0043 26.8 7.6 50 135-184 5-54 (114)
224 PF04977 DivIC: Septum formati 35.3 1.1E+02 0.0023 24.9 5.5 33 153-185 18-50 (80)
225 PRK15313 autotransport protein 35.3 48 0.001 40.3 4.7 9 455-463 794-802 (955)
226 KOG0250 DNA repair protein RAD 35.3 1.3E+02 0.0028 37.3 8.1 64 131-194 351-422 (1074)
227 TIGR02894 DNA_bind_RsfA transc 35.3 2.3E+02 0.005 28.0 8.5 30 157-186 102-131 (161)
228 PF07889 DUF1664: Protein of u 35.1 3.5E+02 0.0076 25.6 9.4 37 157-193 87-123 (126)
229 PF06409 NPIP: Nuclear pore co 34.8 5.7E+02 0.012 27.0 12.1 12 78-89 51-62 (265)
230 COG1605 PheA Chorismate mutase 34.7 1.1E+02 0.0024 27.2 5.9 61 359-423 8-75 (101)
231 TIGR03017 EpsF chain length de 34.6 3.5E+02 0.0075 29.2 10.8 17 134-150 257-273 (444)
232 PF15233 SYCE1: Synaptonemal c 34.6 4.1E+02 0.0089 25.6 9.7 13 124-138 8-20 (134)
233 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.4 3.8E+02 0.0082 24.8 9.8 30 160-189 60-89 (132)
234 PF07462 MSP1_C: Merozoite sur 34.3 6.4E+02 0.014 29.4 12.9 22 198-219 208-233 (574)
235 PF07716 bZIP_2: Basic region 34.1 1.4E+02 0.0031 23.4 5.8 18 168-185 34-51 (54)
236 KOG4462 WASP-interacting prote 33.9 46 0.001 36.5 3.9 16 284-299 32-47 (437)
237 PF04102 SlyX: SlyX; InterPro 33.8 2.2E+02 0.0047 23.8 7.1 41 149-189 8-48 (69)
238 PF08580 KAR9: Yeast cortical 33.8 5.7E+02 0.012 30.4 12.9 142 332-490 201-356 (683)
239 KOG0933 Structural maintenance 33.8 2.5E+02 0.0055 34.9 10.1 18 434-451 986-1003(1174)
240 PF14662 CCDC155: Coiled-coil 33.7 2.9E+02 0.0062 28.1 9.1 43 149-191 71-113 (193)
241 PF06120 Phage_HK97_TLTM: Tail 33.5 5.2E+02 0.011 27.8 11.5 34 131-164 74-107 (301)
242 PF03962 Mnd1: Mnd1 family; I 33.5 1.8E+02 0.0039 28.8 7.7 62 131-193 69-130 (188)
243 TIGR03752 conj_TIGR03752 integ 33.5 2.5E+02 0.0055 32.0 9.6 9 317-325 249-257 (472)
244 PRK02793 phi X174 lysis protei 33.3 2.8E+02 0.0061 23.5 7.8 22 131-152 8-29 (72)
245 PF05377 FlaC_arch: Flagella a 33.2 1.9E+02 0.0041 23.9 6.4 33 148-180 3-35 (55)
246 PF04849 HAP1_N: HAP1 N-termin 33.2 3.6E+02 0.0079 29.1 10.3 43 174-216 228-274 (306)
247 KOG0804 Cytoplasmic Zn-finger 33.1 3.3E+02 0.0072 31.0 10.2 19 171-189 380-398 (493)
248 KOG0980 Actin-binding protein 33.1 2.9E+02 0.0062 33.9 10.3 53 140-192 353-405 (980)
249 TIGR03007 pepcterm_ChnLen poly 32.7 4.6E+02 0.0099 28.9 11.4 15 153-167 318-332 (498)
250 PF10779 XhlA: Haemolysin XhlA 32.4 2.4E+02 0.0053 23.4 7.2 44 151-194 5-48 (71)
251 PF12777 MT: Microtubule-bindi 32.3 1.1E+02 0.0025 32.5 6.6 60 131-190 221-280 (344)
252 PHA01750 hypothetical protein 32.2 1.5E+02 0.0033 25.5 5.8 32 151-182 41-72 (75)
253 PF07989 Microtub_assoc: Micro 31.9 3E+02 0.0065 23.6 7.8 25 169-193 39-63 (75)
254 PRK15244 virulence protein Spv 31.7 25 0.00053 40.6 1.5 16 254-269 358-373 (591)
255 KOG0483 Transcription factor H 31.7 1.4E+02 0.003 30.2 6.6 60 130-189 77-149 (198)
256 PF06103 DUF948: Bacterial pro 31.7 3.3E+02 0.0071 23.2 9.3 60 134-193 22-81 (90)
257 PRK14127 cell division protein 31.5 1.3E+02 0.0028 27.8 5.8 26 165-190 43-68 (109)
258 PF09755 DUF2046: Uncharacteri 31.2 2E+02 0.0044 31.0 8.1 11 208-218 82-92 (310)
259 PRK12704 phosphodiesterase; Pr 31.2 5E+02 0.011 29.8 11.6 19 530-548 481-499 (520)
260 PF11285 DUF3086: Protein of u 31.0 5.5E+02 0.012 27.4 10.9 27 148-174 7-33 (283)
261 PRK14948 DNA polymerase III su 31.0 84 0.0018 36.5 5.7 11 134-144 439-449 (620)
262 PF09789 DUF2353: Uncharacteri 30.9 2.8E+02 0.006 30.1 9.0 64 131-194 126-217 (319)
263 PF10168 Nup88: Nuclear pore c 30.9 3.1E+02 0.0068 32.7 10.3 63 147-218 560-622 (717)
264 KOG4196 bZIP transcription fac 30.8 2E+02 0.0043 27.6 7.0 34 161-194 76-109 (135)
265 KOG2077 JNK/SAPK-associated pr 30.6 1.9E+02 0.0041 33.9 8.1 38 155-192 339-376 (832)
266 PRK11020 hypothetical protein; 30.5 1.7E+02 0.0036 27.5 6.3 21 177-197 35-55 (118)
267 PF15035 Rootletin: Ciliary ro 30.3 3.3E+02 0.0071 27.0 8.9 58 134-191 63-120 (182)
268 KOG0996 Structural maintenance 30.1 2.4E+02 0.0052 35.6 9.2 52 145-196 799-850 (1293)
269 TIGR02168 SMC_prok_B chromosom 30.0 3.8E+02 0.0082 32.1 10.9 17 527-543 1122-1138(1179)
270 PRK13922 rod shape-determining 29.9 1.3E+02 0.0028 30.8 6.2 21 161-181 71-91 (276)
271 COG1340 Uncharacterized archae 29.6 3.8E+02 0.0083 28.8 9.7 60 135-194 17-76 (294)
272 PF12709 Kinetocho_Slk19: Cent 29.4 4.2E+02 0.0091 23.8 9.6 38 152-189 34-72 (87)
273 COG1463 Ttg2C ABC-type transpo 29.4 4.6E+02 0.0099 28.2 10.5 25 278-302 132-156 (359)
274 TIGR03582 EF_0829 PRD domain p 29.3 4.6E+02 0.0099 24.2 9.0 55 450-518 47-101 (107)
275 PRK04406 hypothetical protein; 29.3 3.7E+02 0.008 23.1 8.4 14 179-192 38-51 (75)
276 PF11365 DUF3166: Protein of u 29.3 1.8E+02 0.0039 26.4 6.2 41 150-190 6-46 (96)
277 PF10498 IFT57: Intra-flagella 29.0 5.9E+02 0.013 27.9 11.3 16 53-71 81-96 (359)
278 PF06840 DUF1241: Protein of u 28.9 62 0.0013 31.5 3.5 34 318-355 105-138 (154)
279 TIGR03319 YmdA_YtgF conserved 28.4 5.9E+02 0.013 29.1 11.6 28 327-354 270-297 (514)
280 KOG1103 Predicted coiled-coil 28.4 5.7E+02 0.012 28.5 10.8 42 148-189 248-289 (561)
281 PLN03132 NADH dehydrogenase (u 28.3 28 0.00061 39.1 1.3 11 322-332 51-61 (461)
282 PRK11546 zraP zinc resistance 28.3 2.2E+02 0.0047 27.6 7.0 24 144-167 60-83 (143)
283 TIGR01005 eps_transp_fam exopo 28.3 4.2E+02 0.0091 31.0 10.7 11 286-296 525-535 (754)
284 TIGR03185 DNA_S_dndD DNA sulfu 28.3 5.3E+02 0.012 29.9 11.4 41 154-194 423-463 (650)
285 PF04965 GPW_gp25: Gene 25-lik 28.2 1.2E+02 0.0027 25.9 5.0 36 433-469 3-38 (99)
286 COG1196 Smc Chromosome segrega 28.1 5.1E+02 0.011 32.3 11.9 21 320-340 970-990 (1163)
287 KOG4343 bZIP transcription fac 28.1 83 0.0018 36.3 4.7 82 131-219 278-362 (655)
288 PF05615 THOC7: Tho complex su 28.0 4.8E+02 0.01 24.0 9.5 63 131-193 46-108 (139)
289 PF08826 DMPK_coil: DMPK coile 28.0 3.6E+02 0.0078 22.5 8.9 25 159-183 32-56 (61)
290 PF13815 Dzip-like_N: Iguana/D 27.9 2.3E+02 0.0049 25.8 6.8 34 152-185 80-113 (118)
291 PRK02793 phi X174 lysis protei 27.7 3.4E+02 0.0075 23.0 7.4 46 148-193 11-56 (72)
292 PF04201 TPD52: Tumour protein 27.7 1.6E+02 0.0034 29.1 6.1 26 131-156 29-54 (162)
293 PF04799 Fzo_mitofusin: fzo-li 27.3 4E+02 0.0087 26.6 8.8 42 148-193 123-164 (171)
294 PF11544 Spc42p: Spindle pole 27.2 3.6E+02 0.0079 23.6 7.4 46 148-193 8-53 (76)
295 PRK11448 hsdR type I restricti 27.2 2.3E+02 0.0051 35.4 8.7 62 131-192 149-210 (1123)
296 KOG2751 Beclin-like protein [S 27.1 1.4E+02 0.003 33.7 6.1 36 152-187 183-218 (447)
297 PF03961 DUF342: Protein of un 27.0 3.7E+02 0.008 29.7 9.5 60 134-193 330-395 (451)
298 KOG0946 ER-Golgi vesicle-tethe 26.9 1.3E+02 0.0028 36.5 6.1 56 139-194 651-706 (970)
299 PF05701 WEMBL: Weak chloropla 26.7 5.1E+02 0.011 29.5 10.7 78 139-218 296-380 (522)
300 PF07716 bZIP_2: Basic region 26.7 3.2E+02 0.0069 21.5 6.8 26 154-179 27-52 (54)
301 PF05911 DUF869: Plant protein 26.6 3.3E+02 0.0072 32.8 9.5 54 130-183 588-641 (769)
302 KOG0976 Rho/Rac1-interacting s 26.6 4.6E+02 0.01 32.2 10.4 85 132-221 35-163 (1265)
303 KOG0971 Microtubule-associated 26.6 3.3E+02 0.0072 33.7 9.4 42 358-399 730-774 (1243)
304 TIGR02209 ftsL_broad cell divi 26.5 1.7E+02 0.0037 24.4 5.4 11 212-222 63-73 (85)
305 PF00769 ERM: Ezrin/radixin/mo 26.5 7.2E+02 0.016 25.6 11.2 63 131-193 5-67 (246)
306 COG4372 Uncharacterized protei 26.2 5.2E+02 0.011 29.2 10.1 69 319-388 213-281 (499)
307 KOG0161 Myosin class II heavy 26.2 3.6E+02 0.0079 35.8 10.3 16 473-488 1348-1363(1930)
308 TIGR01339 phycocy_beta phycocy 26.1 56 0.0012 32.2 2.7 29 456-486 113-141 (170)
309 PF15254 CCDC14: Coiled-coil d 26.1 4.5E+02 0.0096 32.0 10.2 11 208-218 544-554 (861)
310 PF05529 Bap31: B-cell recepto 26.0 3.1E+02 0.0068 26.6 7.9 23 171-193 159-181 (192)
311 PF03276 Gag_spuma: Spumavirus 26.0 82 0.0018 36.3 4.3 18 472-489 383-402 (582)
312 KOG0995 Centromere-associated 26.0 2.9E+02 0.0063 32.2 8.5 21 335-355 444-464 (581)
313 TIGR00219 mreC rod shape-deter 26.0 2.6E+02 0.0055 29.4 7.7 10 171-180 96-105 (283)
314 CHL00173 cpeA phycoerythrin al 25.9 6.4E+02 0.014 24.8 10.8 24 455-480 114-137 (164)
315 PRK14849 putative lipoprotein/ 25.8 42 0.00091 43.4 2.2 10 509-518 1679-1688(1806)
316 PF05008 V-SNARE: Vesicle tran 25.6 3.2E+02 0.007 22.5 6.9 24 132-155 26-49 (79)
317 KOG0980 Actin-binding protein 25.5 5E+02 0.011 32.0 10.6 17 471-489 836-852 (980)
318 KOG4672 Uncharacterized conser 25.5 1.2E+02 0.0025 34.1 5.2 9 365-373 477-485 (487)
319 PF08581 Tup_N: Tup N-terminal 25.4 4.6E+02 0.0099 22.9 9.7 36 146-181 26-61 (79)
320 PF04568 IATP: Mitochondrial A 25.4 4.2E+02 0.0091 24.1 7.9 31 159-189 69-99 (100)
321 KOG0239 Kinesin (KAR3 subfamil 25.4 4.5E+02 0.0097 31.2 10.2 15 510-524 625-639 (670)
322 KOG4677 Golgi integral membran 25.3 2.1E+02 0.0046 32.6 7.2 23 174-196 324-346 (554)
323 PRK11519 tyrosine kinase; Prov 25.3 4.1E+02 0.009 31.2 10.0 13 286-298 505-517 (719)
324 PF04420 CHD5: CHD5-like prote 25.3 1.5E+02 0.0033 28.4 5.5 45 146-190 41-90 (161)
325 PRK00295 hypothetical protein; 25.2 4.1E+02 0.0089 22.3 8.1 24 133-156 7-30 (68)
326 PF11382 DUF3186: Protein of u 24.9 2.1E+02 0.0046 30.3 6.9 48 142-189 29-76 (308)
327 PHA03011 hypothetical protein; 24.9 5.4E+02 0.012 23.9 8.5 59 134-192 60-118 (120)
328 PHA03185 UL14 tegument protein 24.9 7.8E+02 0.017 25.4 12.8 12 178-189 116-127 (214)
329 PF03961 DUF342: Protein of un 24.9 3.6E+02 0.0079 29.7 9.0 29 131-159 334-362 (451)
330 PRK04325 hypothetical protein; 24.9 4.4E+02 0.0095 22.5 7.8 19 133-151 11-29 (74)
331 PF01698 FLO_LFY: Floricaula / 24.9 24 0.00053 38.7 0.0 14 335-348 109-122 (386)
332 TIGR03752 conj_TIGR03752 integ 24.8 2.2E+02 0.0049 32.4 7.3 30 136-165 64-93 (472)
333 PF04834 Adeno_E3_14_5: Early 24.0 56 0.0012 29.7 2.1 11 285-296 84-94 (97)
334 PRK02224 chromosome segregatio 24.0 4.8E+02 0.011 30.9 10.3 13 527-539 822-834 (880)
335 PRK14160 heat shock protein Gr 23.9 3.7E+02 0.0081 27.4 8.1 29 168-196 70-98 (211)
336 PF14282 FlxA: FlxA-like prote 23.9 4.1E+02 0.0089 23.9 7.6 60 131-193 19-78 (106)
337 PTZ00454 26S protease regulato 23.8 2.5E+02 0.0055 30.8 7.5 36 159-194 29-64 (398)
338 PRK04863 mukB cell division pr 23.8 3.9E+02 0.0085 34.6 9.9 18 358-375 550-567 (1486)
339 PF13805 Pil1: Eisosome compon 23.7 3.4E+02 0.0075 28.8 8.0 63 131-194 131-193 (271)
340 PRK14849 putative lipoprotein/ 23.6 59 0.0013 42.1 2.9 6 293-298 1502-1507(1806)
341 PRK14954 DNA polymerase III su 23.5 1.4E+02 0.0029 34.9 5.6 18 408-425 562-579 (620)
342 PF06632 XRCC4: DNA double-str 23.5 6E+02 0.013 27.8 10.0 8 69-76 70-77 (342)
343 KOG4343 bZIP transcription fac 23.5 3.8E+02 0.0082 31.3 8.7 31 164-194 307-337 (655)
344 PRK04325 hypothetical protein; 23.5 4.7E+02 0.01 22.3 8.2 42 148-189 12-53 (74)
345 PF03938 OmpH: Outer membrane 23.4 5.9E+02 0.013 23.5 10.8 11 208-218 114-124 (158)
346 PRK00409 recombination and DNA 23.4 6E+02 0.013 30.5 10.9 11 397-407 746-756 (782)
347 PHA03395 p10 fibrous body prot 23.1 2.1E+02 0.0046 25.6 5.5 45 331-375 5-51 (87)
348 KOG0249 LAR-interacting protei 23.1 3.6E+02 0.0078 32.6 8.6 47 141-187 212-258 (916)
349 PF04728 LPP: Lipoprotein leuc 23.1 4.4E+02 0.0095 21.9 7.9 24 140-163 5-28 (56)
350 PF10212 TTKRSYEDQ: Predicted 23.0 5E+02 0.011 30.1 9.6 10 52-61 280-289 (518)
351 PF09728 Taxilin: Myosin-like 23.0 7.2E+02 0.016 26.5 10.4 84 130-218 42-125 (309)
352 PF03405 FA_desaturase_2: Fatt 23.0 4.6E+02 0.01 28.5 9.0 65 404-471 264-328 (330)
353 PF12709 Kinetocho_Slk19: Cent 23.0 2.7E+02 0.006 24.9 6.1 32 157-188 47-78 (87)
354 KOG0612 Rho-associated, coiled 22.9 5.3E+02 0.011 32.9 10.3 62 131-192 465-527 (1317)
355 PF04201 TPD52: Tumour protein 22.9 1.8E+02 0.0039 28.7 5.4 42 140-181 24-65 (162)
356 COG3416 Uncharacterized protei 22.9 8.8E+02 0.019 25.3 12.6 10 290-299 155-164 (233)
357 KOG4643 Uncharacterized coiled 22.8 3.2E+02 0.0069 34.1 8.4 48 130-177 183-230 (1195)
358 KOG0965 Predicted RNA-binding 22.8 2.4E+02 0.0053 34.0 7.3 20 154-173 582-601 (988)
359 KOG4425 Uncharacterized conser 22.8 99 0.0022 35.4 4.1 17 384-400 313-331 (900)
360 PRK15422 septal ring assembly 22.8 5.4E+02 0.012 22.8 10.1 41 153-193 19-59 (79)
361 TIGR01554 major_cap_HK97 phage 22.5 4.6E+02 0.0099 28.0 9.0 17 135-151 3-19 (378)
362 PF15619 Lebercilin: Ciliary p 22.4 6.8E+02 0.015 25.0 9.6 61 131-191 125-189 (194)
363 PF05529 Bap31: B-cell recepto 22.4 4.9E+02 0.011 25.2 8.5 17 175-191 156-172 (192)
364 KOG0977 Nuclear envelope prote 22.3 1.3E+02 0.0029 34.7 5.1 37 157-193 153-189 (546)
365 KOG0977 Nuclear envelope prote 22.3 2.4E+02 0.0053 32.7 7.1 11 390-400 272-282 (546)
366 COG5124 Protein predicted to b 22.2 8.4E+02 0.018 24.8 10.2 39 390-429 116-157 (209)
367 PF11598 COMP: Cartilage oligo 22.2 1.7E+02 0.0036 23.2 4.1 37 319-355 4-40 (45)
368 KOG3863 bZIP transcription fac 22.2 2.2E+02 0.0049 33.3 6.9 41 149-189 515-555 (604)
369 PF04728 LPP: Lipoprotein leuc 22.2 4.6E+02 0.0099 21.7 7.8 38 148-185 6-43 (56)
370 PRK00295 hypothetical protein; 22.2 4.7E+02 0.01 21.9 7.8 46 147-192 7-52 (68)
371 PHA03346 US22 family homolog; 22.2 50 0.0011 37.7 1.8 11 73-83 199-209 (520)
372 COG1196 Smc Chromosome segrega 22.1 5.2E+02 0.011 32.3 10.4 38 319-356 966-1003(1163)
373 PF03148 Tektin: Tektin family 22.1 6.9E+02 0.015 27.3 10.3 43 132-174 245-287 (384)
374 PRK00736 hypothetical protein; 22.1 4.8E+02 0.01 21.9 7.7 51 144-194 4-54 (68)
375 KOG0963 Transcription factor/C 22.0 9.4E+02 0.02 28.5 11.6 125 136-260 308-481 (629)
376 PF04012 PspA_IM30: PspA/IM30 22.0 6.8E+02 0.015 24.6 9.5 20 132-151 52-71 (221)
377 KOG4590 Signal transduction pr 21.9 1.3E+02 0.0028 33.7 4.7 16 317-332 258-273 (409)
378 KOG0999 Microtubule-associated 21.9 4.1E+02 0.009 31.2 8.7 75 131-218 135-209 (772)
379 PRK10698 phage shock protein P 21.8 5E+02 0.011 26.3 8.6 15 136-150 57-71 (222)
380 KOG1029 Endocytic adaptor prot 21.7 9.3E+02 0.02 29.7 11.6 65 130-194 492-577 (1118)
381 KOG4327 mRNA splicing protein 21.7 67 0.0015 32.7 2.3 67 184-250 109-179 (218)
382 KOG3809 Microtubule-binding pr 21.7 4.7E+02 0.01 29.9 8.8 10 208-217 572-581 (583)
383 PF14916 CCDC92: Coiled-coil d 21.5 1.4E+02 0.0031 24.9 3.8 17 137-153 2-18 (60)
384 KOG0612 Rho-associated, coiled 21.5 5.6E+02 0.012 32.7 10.2 51 146-196 466-517 (1317)
385 PF15605 Toxin_52: Putative to 21.5 2.6E+02 0.0055 25.8 5.7 50 395-444 46-101 (103)
386 PF08232 Striatin: Striatin fa 21.5 4E+02 0.0088 25.0 7.4 35 154-188 34-68 (134)
387 PF03670 UPF0184: Uncharacteri 21.4 4.8E+02 0.01 23.2 7.2 45 144-188 25-69 (83)
388 TIGR02209 ftsL_broad cell divi 21.4 4.8E+02 0.01 21.7 8.0 30 149-178 28-57 (85)
389 KOG4657 Uncharacterized conser 21.3 4.9E+02 0.011 27.2 8.3 6 289-294 222-227 (246)
390 KOG2010 Double stranded RNA bi 21.3 5.1E+02 0.011 28.6 8.8 64 132-195 120-190 (405)
391 PF05266 DUF724: Protein of un 21.2 6.4E+02 0.014 25.2 9.1 15 173-187 159-173 (190)
392 PF15188 CCDC-167: Coiled-coil 21.1 4.3E+02 0.0093 23.5 6.9 27 168-194 38-64 (85)
393 PF10083 DUF2321: Uncharacteri 21.0 2.3E+02 0.0049 28.0 5.7 58 386-445 76-139 (158)
394 PRK00846 hypothetical protein; 21.0 5.7E+02 0.012 22.3 8.0 23 131-153 13-35 (77)
395 COG4717 Uncharacterized conser 21.0 5.8E+02 0.013 31.5 9.9 38 159-196 774-811 (984)
396 COG1842 PspA Phage shock prote 20.9 9.2E+02 0.02 24.8 10.5 8 291-298 168-175 (225)
397 KOG0288 WD40 repeat protein Ti 20.9 5.7E+02 0.012 29.0 9.3 29 134-162 44-72 (459)
398 COG4372 Uncharacterized protei 20.9 7.1E+02 0.015 28.2 9.9 17 68-84 29-45 (499)
399 KOG3850 Predicted membrane pro 20.8 5.3E+02 0.012 29.0 9.0 88 136-229 279-374 (455)
400 COG1792 MreC Cell shape-determ 20.8 3.2E+02 0.0069 28.7 7.2 13 168-180 92-104 (284)
401 PRK05431 seryl-tRNA synthetase 20.8 5.2E+02 0.011 28.6 9.2 28 446-473 297-325 (425)
402 PF07407 Seadorna_VP6: Seadorn 20.8 1.7E+02 0.0037 32.1 5.2 17 375-391 174-190 (420)
403 PF06818 Fez1: Fez1; InterPro 20.7 3.6E+02 0.0078 27.5 7.2 51 131-181 10-60 (202)
404 PF10205 KLRAQ: Predicted coil 20.7 6.7E+02 0.015 23.1 9.5 44 150-193 10-53 (102)
405 COG1842 PspA Phage shock prote 20.6 4.5E+02 0.0097 27.0 8.0 15 137-151 58-72 (225)
406 PRK13922 rod shape-determining 20.2 8.1E+02 0.018 25.0 9.9 29 164-192 67-95 (276)
407 KOG2077 JNK/SAPK-associated pr 20.2 2.6E+02 0.0057 32.9 6.7 53 136-188 327-379 (832)
408 TIGR00634 recN DNA repair prot 20.1 5.2E+02 0.011 29.4 9.2 16 131-146 301-316 (563)
409 PF09738 DUF2051: Double stran 20.1 6.7E+02 0.015 26.9 9.4 20 323-342 265-284 (302)
410 PLN02678 seryl-tRNA synthetase 20.1 6.9E+02 0.015 28.2 10.0 72 138-218 33-107 (448)
411 KOG4674 Uncharacterized conser 20.0 6.2E+02 0.013 33.6 10.5 27 132-158 1315-1341(1822)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=3.2e-16 Score=173.69 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=45.6
Q ss_pred ecCCCC-CccccCc-cccccccC------CCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHH
Q 008574 99 SLNRPV-VEQFARP-RRQRIVDA------NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFAL 157 (561)
Q Consensus 99 ~~~r~g-~~df~~r-~~~~~~~~------~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaL 157 (561)
-.||.| ||||.|| |++|++++ |++++++++ .++.+++.|++..+..+++.+.|+..+
T Consensus 436 vlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eese--qkA~e~~kk~~ke~ta~qe~qael~k~ 500 (1102)
T KOG1924|consen 436 VLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESE--QKAAELEKKFDKELTARQEAQAELQKH 500 (1102)
T ss_pred HHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 479999 9999999 68887776 888888888 788888888888887777776665433
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=8e-07 Score=100.46 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCCCCCccccCCCCCCChhh-------hhhhhhhcccc
Q 008574 269 PPPPRPPARAAATQKTPSFA-------QLYHSLTKQVE 299 (561)
Q Consensus 269 PpPp~p~~g~~~~~rsP~~v-------eLy~sLk~K~e 299 (561)
|||||||.|+.|++..|+.. -|+++|++|+.
T Consensus 582 ppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~ 619 (1102)
T KOG1924|consen 582 PPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKV 619 (1102)
T ss_pred CCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCcccc
Confidence 55556667777777777665 78999999985
No 3
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=97.62 E-value=0.00049 Score=70.33 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 008574 177 KLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 177 eL~qQLsqAeaQIssL~s 194 (561)
.|+.||..+++||+.+.+
T Consensus 126 ALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 126 ALEDELSRLRAQIAKIVA 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566677777766665
No 4
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.75 E-value=0.33 Score=41.19 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=55.0
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.-..|+.|+...-..|.-|+.++..|+.+...+...+.+|..+|.+|+++.......|..|-+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999888887777765554
No 5
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=4.5 Score=43.63 Aligned_cols=19 Identities=32% Similarity=0.128 Sum_probs=12.2
Q ss_pred cCChhhHHHHHHHHhhhhc
Q 008574 204 YQSPKFKDVQKLIANKLEH 222 (561)
Q Consensus 204 ~qs~~~KkIQklia~kLE~ 222 (561)
.+|.+.--||.+++---|+
T Consensus 120 pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 120 PSSDLVGLIQELIAAFSED 138 (365)
T ss_pred ccchHHHHHHHHHHHhcCC
Confidence 3556667788888773333
No 6
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.79 E-value=1.9 Score=48.13 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 137 eeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+.+|...+....+|+.+|+.++.|++.+.....+++.+.++|+.++..++.|+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555556677778888877777777777777776666666666666665
No 7
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=92.48 E-value=0.12 Score=56.67 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=8.3
Q ss_pred Chhhhhhhhhhcc
Q 008574 285 PSFAQLYHSLTKQ 297 (561)
Q Consensus 285 P~~veLy~sLk~K 297 (561)
..+..||..|..-
T Consensus 262 ~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 262 GGRGALFAQLNQG 274 (480)
T ss_pred ccHHHHHHHHhcc
Confidence 4567777777654
No 8
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.89 E-value=2 Score=35.60 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=51.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+|+.-|+..-..++.++.||...+...-.+.....+.+..|..|.+++..++.++..+.+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578888888888888899998888888888888899999999999999999988877654
No 9
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.33 E-value=1.2 Score=45.76 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=58.7
Q ss_pred Cccccccc-hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 122 GKIEDGLM-DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 122 ~~Ved~~~-~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+.|-+++| .....++.+||+.......+|..+++.+..|++.++.+...++.|+..|...+..+..++..|+.+-
T Consensus 125 ~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 45556666 3446778888888888888888888888888888888888888888888888888888887777543
No 10
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=91.26 E-value=0.21 Score=62.60 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.3
Q ss_pred HHHHHhhhhh
Q 008574 509 EALLLQGLHF 518 (561)
Q Consensus 509 ~~lL~qgvrF 518 (561)
..|.||.|+|
T Consensus 1916 AQLiyq~V~~ 1925 (2039)
T PRK15319 1916 AQVVWQNYSA 1925 (2039)
T ss_pred EEEEEEEecc
Confidence 3455655554
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.20 E-value=0.44 Score=53.20 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.2
Q ss_pred hhHHHH
Q 008574 330 AHLLAI 335 (561)
Q Consensus 330 a~l~aI 335 (561)
+-+.+|
T Consensus 497 ~LmaqI 502 (569)
T KOG3671|consen 497 ALMAQI 502 (569)
T ss_pred HHHHHH
Confidence 333333
No 12
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=89.80 E-value=0.096 Score=55.30 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=0.0
Q ss_pred CChhhhhhhhhhc
Q 008574 284 TPSFAQLYHSLTK 296 (561)
Q Consensus 284 sP~~veLy~sLk~ 296 (561)
++.+..||--|.+
T Consensus 259 ~~~~~AlFaeLN~ 271 (312)
T PF01213_consen 259 SGGMSALFAELNQ 271 (312)
T ss_dssp -------------
T ss_pred cccHHHHHHHHhc
Confidence 4566777777754
No 13
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=89.73 E-value=0.23 Score=54.51 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=7.7
Q ss_pred cCCCCCCChhhhhhhh
Q 008574 278 AAATQKTPSFAQLYHS 293 (561)
Q Consensus 278 ~~~~~rsP~~veLy~s 293 (561)
.....++.-+.+|-++
T Consensus 259 ~~k~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 259 ANKGGRGALFAQLNQG 274 (480)
T ss_pred cccccHHHHHHHHhcc
Confidence 3444455555555444
No 14
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=89.72 E-value=2.6 Score=43.57 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=18.6
Q ss_pred hhhhhhhhcccccCCCCCCCCCCCCccchhhhhhHHHHhc
Q 008574 288 AQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQN 327 (561)
Q Consensus 288 veLy~sLk~K~e~~~~~~~~~~~~~~~~~a~~~~i~Ei~n 327 (561)
.+|-.-.+++..+.+.....+..+......+.|+|.+|.+
T Consensus 210 ~~li~e~r~~~~~~~~t~~~~~~~~~~~PnMldVLKDmnk 249 (253)
T PF05308_consen 210 IDLIKERRKQKSGAGKTVSSSKSKSPDVPNMLDVLKDMNK 249 (253)
T ss_pred HHHHHHHHhcccccccccccCCccccCCccHHHHHHhhhh
Confidence 3555555554444333322333322122346777777653
No 15
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.80 E-value=4.2 Score=35.44 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE-------LEkENqeL~qQLsqAeaQIssL~ 193 (561)
-..|+.|+...-..|.=||.|++.++.+...+...++. |+.||++|+++...=...+..|-
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888877777777777777777766666655444 66666666666555554444433
No 16
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=88.67 E-value=5.3 Score=43.71 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.4
Q ss_pred hhhhhh
Q 008574 288 AQLYHS 293 (561)
Q Consensus 288 veLy~s 293 (561)
-||-+.
T Consensus 419 eefkrr 424 (442)
T PF06637_consen 419 EEFKRR 424 (442)
T ss_pred HHHHHH
Confidence 444333
No 17
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.43 E-value=3.2 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 008574 471 SGIISKIKQASMKLAQMYMKRV 492 (561)
Q Consensus 471 ~gii~kiK~asv~la~~ymkrv 492 (561)
.|+.+=+=.+.=+||.=||||+
T Consensus 363 ~g~g~G~s~aa~~LadyYik~A 384 (475)
T PRK13729 363 MGIGGGASKAAQTLSDYYIKRA 384 (475)
T ss_pred HhhhhhhhHHHHHHHHHHHHHH
Confidence 4444445566777888888876
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.63 E-value=3.5 Score=37.53 Aligned_cols=54 Identities=30% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
.+|=..+..-+..+..|-.++..|+..+..+...|..|.-||..|+..+.....
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777778888888888888888888888888888888887776654
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.97 E-value=67 Score=37.28 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=51.8
Q ss_pred hhhhhhhhhhcccccCCCCCCCCCCCCccchhhhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHh--------cc
Q 008574 286 SFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA--------AA 357 (561)
Q Consensus 286 ~~veLy~sLk~K~e~~~~~~~~~~~~~~~~~a~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~--------~~ 357 (561)
++.+-|+.|+.+...+.. -....+.||++=-.=...|.++++..-..+..|..++.. +.
T Consensus 423 pL~~e~r~lk~~~~~~~~-------------e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Y 489 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRES-------------ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAY 489 (594)
T ss_pred HHHHHHHHHHHHHhhcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 468899999986543221 122233333332223344555555555555555555543 33
Q ss_pred ccCHHHHHHHHHhHHHHhhh-hhhhHHHHhhcCCchhhHH
Q 008574 358 YTNIEDLLEFVDWLDKELSS-LADERAVLKHFKWPEKKAD 396 (561)
Q Consensus 358 ~~di~~v~~fv~wld~~L~~-L~DEraVL~~F~wPe~K~d 396 (561)
+.-|-+|++.++-=+.++.. |.|=|.+-+--++=+.|++
T Consensus 490 t~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666 4444444444466666665
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.27 E-value=6.8 Score=37.32 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=39.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL--NAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~--NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..+|...+..-...+.+|+.++..+..|+..+... +++|..+...|..++..+...+..|++
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555556666666666665554 677777777777777777777777775
No 21
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=85.96 E-value=0.76 Score=51.59 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 432 KMASLLDKSERSIQR 446 (561)
Q Consensus 432 km~~lldk~E~~~~~ 446 (561)
+|..+||.+-+.|.-
T Consensus 584 r~~~fl~~cA~RI~~ 598 (817)
T KOG1925|consen 584 RLTHFLDQCARRIAM 598 (817)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555433
No 22
>PRK09752 adhesin; Provisional
Probab=85.92 E-value=0.63 Score=56.58 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=6.5
Q ss_pred hhcccccCCCc
Q 008574 455 MHSYKDCKIPV 465 (561)
Q Consensus 455 ~~ryk~~~Ip~ 465 (561)
..+|+.+|+-.
T Consensus 1101 ~e~Y~S~G~TA 1111 (1250)
T PRK09752 1101 TDHYHSSGIIA 1111 (1250)
T ss_pred ccceeeeeEEE
Confidence 34677766643
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.40 E-value=5.1 Score=36.76 Aligned_cols=52 Identities=31% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
.+|=.++..-+..+..+-.++..|+..+..+..+|..|+-||..|+..+...
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888889999999999999999999999999888887765
No 24
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=85.25 E-value=2.2 Score=43.78 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=55.4
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCccc------hhH-HHHHhhhhhhhh----
Q 008574 457 SYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELV----HNSDRES------TQE-ALLLQGLHFAYR---- 521 (561)
Q Consensus 457 ryk~~~Ip~~wmlD~gii~kiK~asv~la~~ymkrv~~El~~~----~~~~~~~------~~~-~lL~qgvrFAfR---- 521 (561)
|+...||-.+=|--..-+++=|+--++---.|+.++.+|.+.. .|+.... -++ +.+.-.+.--=|
T Consensus 98 Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~RigVC 177 (281)
T KOG3997|consen 98 RCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIGVC 177 (281)
T ss_pred HHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhheee
Confidence 3344444433222344566777777777778999999998764 3332221 122 233434433333
Q ss_pred ---hhccCCCCchHHhHHHHHHHHhccc
Q 008574 522 ---AHQFVGGLDSETLCAFEEIRQRVPQ 546 (561)
Q Consensus 522 ---vhqfAGG~D~~t~~afeElr~~~~~ 546 (561)
-|+||+|+|=+|-++|+|+-.+...
T Consensus 178 lDTCH~FaaGyDI~Tee~y~evmkeFde 205 (281)
T KOG3997|consen 178 LDTCHTFAAGYDIRTEEAYEEVMKEFDE 205 (281)
T ss_pred HhhhhhhccccccchHHHHHHHHHHHHH
Confidence 3999999999999999998765443
No 25
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.21 E-value=0.68 Score=56.06 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHhhhhhhhhhhccCC
Q 008574 511 LLLQGLHFAYRAHQFVG 527 (561)
Q Consensus 511 lL~qgvrFAfRvhqfAG 527 (561)
+||..+|.-==||-|.|
T Consensus 266 ~l~~~ird~ny~Ylf~~ 282 (2365)
T COG5178 266 MLWESIRDVNYVYLFSG 282 (2365)
T ss_pred ccHHHhccccEEEEecC
Confidence 45666665544555543
No 26
>PHA03211 serine/threonine kinase US3; Provisional
Probab=84.74 E-value=1 Score=49.45 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHHHHHHH
Q 008574 424 VPFGAALKKMASLLDKSE 441 (561)
Q Consensus 424 ~p~~~al~km~~lldk~E 441 (561)
++....+.=+.+++.-|+
T Consensus 257 l~~~~~~~i~~qi~~aL~ 274 (461)
T PHA03211 257 LGLAQVTAVARQLLSAID 274 (461)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 455555555556665553
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.28 E-value=5.1 Score=40.19 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
...+.+++....+...+|+.+|++|.+++..++.++..+++..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666677778888777777777777666543
No 28
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.14 E-value=4 Score=41.70 Aligned_cols=62 Identities=27% Similarity=0.331 Sum_probs=27.2
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+..|.+++...+.....|+.+...+..+...|.......+.+...|.+++..+...+..|.
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554455555555555544445555555555555555555444
No 29
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.66 E-value=5 Score=31.27 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+|+.++..|+...+.|...++.|..|+..|+.++..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777777777777777666544
No 30
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.12 E-value=11 Score=39.59 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+|....+..+.++.+|+.|...++.++...++++.++.++.+++..++.+|..++
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555555555555555555555555555555444
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.10 E-value=8.5 Score=43.93 Aligned_cols=68 Identities=24% Similarity=0.219 Sum_probs=39.6
Q ss_pred ccCcccccccCccc--cccccccCCCCCcccccccccccCcccccc-----cc-cCccccccccchhhhhhhhcCC---C
Q 008574 10 TNNMSHSTAATTTF--RLRANSKTRESPKQEAGINGVSLSPELKAR-----AK-SVPADVKTNNISKSRRALILNK---P 78 (561)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~r-----a~-s~~~~~k~~~~~~~~r~~~~n~---~ 78 (561)
-||+..|--|.+.- ..........++..-+||-.|..++ +| .= .+|.+.. +.+.....|..+. |
T Consensus 9 F~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s---~rdY~Tf~Wa~~p~~~~--~~s~~~~~V~F~ayyLP 83 (546)
T PF07888_consen 9 FNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSS---TRDYYTFVWAPVPENYV--EGSAVNCQVQFQAYYLP 83 (546)
T ss_pred EeccccccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCc---hhheeeEEeeccCcccc--CCCccceEEEECcccCC
Confidence 35666665555543 4444555567778888887776655 22 11 3344433 5555556777775 8
Q ss_pred CCcC
Q 008574 79 KSAE 82 (561)
Q Consensus 79 k~~~ 82 (561)
|.+.
T Consensus 84 k~~~ 87 (546)
T PF07888_consen 84 KDDD 87 (546)
T ss_pred CCCC
Confidence 8644
No 32
>PRK11637 AmiB activator; Provisional
Probab=81.07 E-value=18 Score=39.34 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=27.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+...++++++....+.+.+++.++..+..++..+......++.+...+++++..++.++
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei 105 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI 105 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555665555555555555444444444444444444443333333333333333
No 33
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.75 E-value=10 Score=38.32 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=39.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
....+++.+.-....++|..++..+..|++.+...|..+++....+++++..++.++.++..
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666677777777777777777777666666666666666655554
No 34
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=80.08 E-value=0.68 Score=49.06 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHhhh
Q 008574 335 IKADIETK 342 (561)
Q Consensus 335 Ik~DVe~~ 342 (561)
|-.|-++|
T Consensus 282 V~~~~~TH 289 (312)
T PF01213_consen 282 VTKDMMTH 289 (312)
T ss_dssp --------
T ss_pred cCcchhcc
Confidence 33444443
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.04 E-value=9.3 Score=37.33 Aligned_cols=60 Identities=30% Similarity=0.266 Sum_probs=45.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+-+.+.........++.|...+..|+.+|+.++..|+.|+..|.+++...+..+..|-.
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544445567778888888888888889999999998888888888888766654
No 36
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.51 E-value=20 Score=30.22 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=27.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
..|++|++.--..+++|+.|-..|+.+...|......|-..|..-++.|.....
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666665555555555555555555544444444444433333333333
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.45 E-value=20 Score=30.97 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=28.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA-------QSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL-------~~~NeELEkENqeL~qQLs 183 (561)
.-+.|+.|+...-.-|.-||.|++.|+.+...+ +...+.|++||..|+++..
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777766666666666666555544433 3334445555555544433
No 38
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=79.18 E-value=5.3 Score=44.24 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=9.1
Q ss_pred ccchhhhhhHHHHhc
Q 008574 313 AVSIAHSSIVGEIQN 327 (561)
Q Consensus 313 ~~~~a~~~~i~Ei~n 327 (561)
...+|++|+++-|..
T Consensus 451 ~~sDaRsdLL~aIr~ 465 (518)
T KOG1830|consen 451 PISDARSDLLAAIRS 465 (518)
T ss_pred CCCchHHHHHHHHHh
Confidence 345677777766643
No 39
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.05 E-value=33 Score=32.46 Aligned_cols=57 Identities=28% Similarity=0.281 Sum_probs=27.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+.+...+.+..+..+++|+.+...+-.|+..|...+..+|.+.-.+..++..++..+
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444445554444444444444444444444444444
No 40
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.85 E-value=29 Score=29.32 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=41.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
..+..|+.+|+.....+.-.+.++..+..|-+....+....-.++.+|+.++..++.++..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766666667777777777766666666666777777777666666543
No 41
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.58 E-value=25 Score=32.35 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=51.7
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
..+.+++.+|.--+..+..++.....|.++.+.|...+..|+.++..+.+.+..++++|.++....
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888898888888888888888888777543
No 42
>PRK11637 AmiB activator; Provisional
Probab=77.51 E-value=24 Score=38.40 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++++++........+++.++..+..++..+......++.+...+++++..++.+|..++
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444443333
No 43
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.49 E-value=19 Score=37.12 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=53.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHH--------------------------------------------------
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAE-------------------------------------------------- 160 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkE-------------------------------------------------- 160 (561)
++..+++.++.....++..|+..|.....+
T Consensus 6 ~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIVt 85 (248)
T PF08172_consen 6 KELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIVT 85 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHHH
Confidence 556777777777777887777665544422
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHH
Q 008574 161 --FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKL 215 (561)
Q Consensus 161 --lEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQkl 215 (561)
-+....+|.|||.|...+.+++..++.++..|++-+.+ +.+||.=|
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k---------LYEKiRyl 133 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK---------LYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 23455668888888888888888888888888874442 66665544
No 44
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=77.27 E-value=11 Score=43.42 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=51.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e 198 (561)
.+.+-....|.+.+.-+++|++|+.+++...++++......+.|...|+.++.+++.++.++..+++-
T Consensus 86 RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 34444556666667777888888988888888888877777777778888888888888777766553
No 45
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.05 E-value=45 Score=34.16 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=18.0
Q ss_pred HhHHHHHHHH---hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKL---MLSENLVKDLQSEVFALKAEFVKAQS 166 (561)
Q Consensus 131 Kkk~ELeeKL---dlnEnlikELQsELeaLkkElEkL~~ 166 (561)
+.+.+|.+.+ +..+..+.+++.|...|..|.....+
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~e 53 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVE 53 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 33444445666666666655554333
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.96 E-value=22 Score=34.75 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=23.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
|..-...+..|+.+|..+..++......++.+..|..-|+=++..++.++..|+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444444444444444444
No 47
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.34 E-value=1.5e+02 Score=33.97 Aligned_cols=89 Identities=24% Similarity=0.237 Sum_probs=51.6
Q ss_pred hHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHHHHHHhHHHHhhhhhhhHHHHhhcCCchhhHHHHHH
Q 008574 321 IVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMRE 400 (561)
Q Consensus 321 ~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~~fv~wld~~L~~L~DEraVL~~F~wPe~K~dalRe 400 (561)
-|.+++|+|--| ++||.+.-..|++|-..++. ++.+|+. |++. |-..|..+=||
T Consensus 474 ~~~~e~nksi~L---ee~i~~~~~~i~El~~~l~~---------------~e~~L~~------a~s~--~~~~ke~~e~e 527 (622)
T COG5185 474 RIKTEENKSITL---EEDIKNLKHDINELTQILEK---------------LELELSE------ANSK--FELSKEENERE 527 (622)
T ss_pred HHHHHhccceeH---HHHhhhHHhHHHHHHHHHHH---------------HHHHHHH------HHHH--HHHHHHhhHHH
Confidence 344555555433 45666655555555554442 2333332 2333 44677777777
Q ss_pred HHhhhhhhhhHHHhhhcccCCCCCchHHHHHHHHH
Q 008574 401 AAVEYRDLKQLENEISSYRDDTNVPFGAALKKMAS 435 (561)
Q Consensus 401 Aa~~Y~~L~~l~~e~s~~~d~p~~p~~~al~km~~ 435 (561)
--+---..++||.||...+......+-.+=+++++
T Consensus 528 ~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs 562 (622)
T COG5185 528 LVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQS 562 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHH
Confidence 77777778999999998877766544444344433
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.25 E-value=20 Score=36.06 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+++.++....+....|..+|.+|..|...++.++..++.++..++.
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666667777777777777777777777777766664
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.26 E-value=2.1e+02 Score=35.57 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=75.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHHHHHHhHHHHhhhhhhhHHHHhhc--CCchhhHHHHHHHHhhhhh
Q 008574 330 AHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF--KWPEKKADAMREAAVEYRD 407 (561)
Q Consensus 330 a~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~~fv~wld~~L~~L~DEraVL~~F--~wPe~K~dalReAa~~Y~~ 407 (561)
+-+..++.||.+--..|+...+.+.... +-|..++.-.+-..++.+..-+|+.-|.|- -+++.+.++.-++-.+-.+
T Consensus 857 ~kv~~~~~~~~~~~~el~~~k~k~~~~d-t~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 857 AKVDKVEKDVKKAQAELKDQKAKQRDID-TEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHhhh-HHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 3344466677766666666666665422 235555666666667777788888888776 7888888877777766666
Q ss_pred hhhHHHhhhcc---------c-CCCCCchHHHHHHHHHHHHHHHHHHH
Q 008574 408 LKQLENEISSY---------R-DDTNVPFGAALKKMASLLDKSERSIQ 445 (561)
Q Consensus 408 L~~l~~e~s~~---------~-d~p~~p~~~al~km~~lldk~E~~~~ 445 (561)
-.-|..|...| + -||. -|..-|++|+.-.+++|+.++
T Consensus 936 ~~wi~~ek~~fgk~gt~yDf~~~~p~-~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 936 HEWIGDEKRLFGKKGTDYDFESYDPH-EAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred ccchhHHHHhhcCCCCccccccCCHh-HHHHHHHHhhHHHHHHHhhcC
Confidence 66666666655 2 2333 467788888877777777764
No 50
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.71 E-value=23 Score=37.60 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+.+++.++..+..|.+.+.++..++|.|..++.+++..++.+...+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444
No 51
>PF15195 TMEM210: TMEM210 family
Probab=73.59 E-value=2.3 Score=38.52 Aligned_cols=11 Identities=64% Similarity=1.494 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 008574 261 SMPAPLPPPPP 271 (561)
Q Consensus 261 ~~PpPpPPPpP 271 (561)
++|||||||+|
T Consensus 105 ~~pppppP~~p 115 (116)
T PF15195_consen 105 EEPPPPPPPPP 115 (116)
T ss_pred CCCCcCcCCCC
Confidence 34444444433
No 52
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=73.36 E-value=5.7 Score=44.77 Aligned_cols=6 Identities=17% Similarity=0.650 Sum_probs=2.1
Q ss_pred hhHHHH
Q 008574 320 SIVGEI 325 (561)
Q Consensus 320 ~~i~Ei 325 (561)
++++-|
T Consensus 497 ~LmaqI 502 (569)
T KOG3671|consen 497 ALMAQI 502 (569)
T ss_pred HHHHHH
Confidence 333333
No 53
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=72.76 E-value=1e+02 Score=34.57 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=35.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENq 176 (561)
.-|.+|..-...-++.||+||.-+.+.++.-.+..++||.=..
T Consensus 128 tSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCs 170 (558)
T PF15358_consen 128 TSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCS 170 (558)
T ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHH
Confidence 6678888877888899999999999999888888888886433
No 54
>PRK09039 hypothetical protein; Validated
Probab=72.44 E-value=35 Score=36.66 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=26.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
....|+.+|......+.+...++..|+.+++.|..+...++.+....+++...+..++.+|
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444444444444444444444444444444444333333333333333333
No 55
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.00 E-value=20 Score=37.54 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=55.0
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+++..++++...--++.++.|..++..+..+.+.+..++++++.+...|++++..++..|.+..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888899999988888888889999999999999999999998885554
No 56
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=71.94 E-value=5.8 Score=39.64 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=4.5
Q ss_pred ceeeeecCCC
Q 008574 94 KVFGRSLNRP 103 (561)
Q Consensus 94 ~~~~~~~~r~ 103 (561)
-||+--.||.
T Consensus 88 sVVV~k~~RG 97 (225)
T KOG3397|consen 88 SVVVKKDQRG 97 (225)
T ss_pred EEEEehhhcc
Confidence 3444444554
No 57
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=71.92 E-value=45 Score=29.08 Aligned_cols=50 Identities=28% Similarity=0.342 Sum_probs=42.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
+.+.+|..+|.-.++++..|..-+.+++.++-+....+..|+.++..++.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999998888888887775544
No 58
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=71.69 E-value=68 Score=37.92 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=27.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkE 174 (561)
+....|+++|....+.+.+++.+++...+.+.........+..|
T Consensus 521 e~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~E 564 (739)
T PF07111_consen 521 EVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRE 564 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677778887777777777766665555555444444444433
No 59
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.66 E-value=54 Score=33.08 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=32.8
Q ss_pred hHHHHHHHHhHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSEN-----------LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 132 kk~ELeeKLdlnEn-----------likELQsELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
.+++|-.+|-..+. ++++....|.....|+..|++.|..|+.+|++|+.
T Consensus 17 skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556565544443 34555566777778888888888888888887754
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=70.65 E-value=18 Score=29.28 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
..+..|..++..|...|..|..++..|..++..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444433
No 61
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.05 E-value=84 Score=30.10 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
.++..+..++..+....+.+..|+..|.+++.....+|.+|.+.
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555555666555553
No 62
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=69.40 E-value=3.7 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhHHHHh-----hhhhhhH
Q 008574 360 NIEDLLEFVDWLDKEL-----SSLADER 382 (561)
Q Consensus 360 di~~v~~fv~wld~~L-----~~L~DEr 382 (561)
.+.=+|.+=.|.|..+ +.-+||.
T Consensus 208 kYNY~VSYG~~Tdk~mE~G~IsV~~DE~ 235 (465)
T PF01690_consen 208 KYNYVVSYGGYTDKDMEFGSISVSLDEH 235 (465)
T ss_pred ccceEEEeccccccceeeeeEEEEEecc
Confidence 3344556666777543 3356885
No 63
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.39 E-value=34 Score=33.50 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=36.7
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
...++..++......+.+|+.++..|..++..+.....+.++-++.++.++..+.-++..++.+
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666777777777777777777777777777777777777777666666553
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.38 E-value=20 Score=34.10 Aligned_cols=60 Identities=28% Similarity=0.287 Sum_probs=50.4
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEF--VKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkEl--EkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+....+|++.+..-...++.|+.++..+.... +++.....+|+.|+..+...+..++..-
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45679999999999999999999999888665 5678888889999999988888888743
No 65
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.33 E-value=50 Score=28.15 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
.-+..|+.|++.+...|..+..++..|..+..+++.+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555533
No 66
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.14 E-value=29 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
...++|++...++.++|..+.=.+..+.+++
T Consensus 115 ~~~e~L~~~~e~l~r~nl~~~p~l~el~~~~ 145 (244)
T KOG3270|consen 115 KIQEKLVKSVEKLARENLEKEPALVELRNQA 145 (244)
T ss_pred HHHHHHHHHHHHhcccchhhccchHHHHhhh
Confidence 5555555555555555554433333444433
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.49 E-value=38 Score=35.86 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+|..++.++..+......+.++..+++.++..+...+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333333333
No 68
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=68.15 E-value=21 Score=36.48 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
|+++.+.......-|+.|+....++++..+...+.++++..++..+++++.++.+.|+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444444444555566666666666666666777777666666666666666655553
No 69
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=68.10 E-value=22 Score=31.10 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
.+.+||..|..|...++..+..++.|+.||+.|+.-+..+-.
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888899999999888777665543
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=67.45 E-value=25 Score=28.48 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008574 174 QNKKLVEDLVAAEAKI 189 (561)
Q Consensus 174 ENqeL~qQLsqAeaQI 189 (561)
+|..|..++..+..++
T Consensus 41 en~~L~~~~~~l~~e~ 56 (65)
T smart00338 41 ENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=67.35 E-value=33 Score=37.92 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.4
Q ss_pred HHHHHHHhHhH
Q 008574 134 KEFEEKLMLSE 144 (561)
Q Consensus 134 ~ELeeKLdlnE 144 (561)
.+|+.++..-.
T Consensus 309 ~~l~~~l~~l~ 319 (562)
T PHA02562 309 KELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 72
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.16 E-value=34 Score=40.20 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=27.8
Q ss_pred ChhhhhhhhhhcccccCCCCCCCCCCCCccchhhhhhHHHHhcchhhHHHHH
Q 008574 285 PSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIK 336 (561)
Q Consensus 285 P~~veLy~sLk~K~e~~~~~~~~~~~~~~~~~a~~~~i~Ei~nRSa~l~aIk 336 (561)
|-++.+|++|.+|--+-..+ .+.. .-.+..++|++.+| +|+.-.-
T Consensus 400 pKLl~~a~gL~kRl~~~~p~--~~~~---~ke~l~a~~ap~e~--aylSkca 444 (797)
T KOG2211|consen 400 PKLLQTADGLTKRLPAESPS--VTAI---QKETLDAIVAPVEN--AYLSKCA 444 (797)
T ss_pred HHHHHHHHhHHHHhhcccCC--cccc---HHHHHHHHHHHHHH--HHHHHHH
Confidence 45678888888877551111 1110 11356789999999 8886544
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.53 E-value=27 Score=36.18 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+++.+++.+.+|++.|...+.++|.+...++..+..++.+.+.|.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555544444
No 74
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=66.44 E-value=73 Score=27.21 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=40.0
Q ss_pred HHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 135 EFEEKLMLSEN-LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 135 ELeeKLdlnEn-likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
||+..|..... +-+++..+...|......|.........++..|..++..+..++..|...
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556543333 33455566777777777777777777777777777777777777666653
No 75
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=66.35 E-value=8.9 Score=37.56 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
+||+.||-..-.-.--|+.|| +|++.|...++.|.+|..+|++++
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777755554445667777 666666666666666666666655
No 76
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.30 E-value=46 Score=30.37 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+.+++.++..+..++..++....++..||..|+-+-..++..+..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888888888888888888888888888888888877766553
No 77
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.12 E-value=52 Score=32.00 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 156 aLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.|..|...|..+...|+.+|..|...+..+..++..|..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee 124 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEE 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccch
Confidence 677777777777777777777777666666666555554
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.05 E-value=2.6e+02 Score=32.56 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=35.3
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
.++..+|++.|+.-...+..++.++..+..++.++.....+.+.++.++.+++...
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666666655533
No 79
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.96 E-value=47 Score=37.43 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~ 179 (561)
++..++++..+..+++.+|+.|.
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444443
No 80
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.79 E-value=44 Score=38.51 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+.|+.++..+.+++.++......++.+...+..++..++.++..+.
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444445555555555554443
No 81
>PF14282 FlxA: FlxA-like protein
Probab=65.57 E-value=33 Score=30.87 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 145 NLVKDLQSEVFALKAEFVKAQS----LNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 145 nlikELQsELeaLkkElEkL~~----~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..|..|+.++..|.+++..|.. -.++.....+.|..++..+.+||..+..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655 1344455666777778888888876665
No 82
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=65.52 E-value=97 Score=32.89 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhhhhHHHhhh---cccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 395 ADAMREAAVEYRDLKQLENEIS---SYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVM 455 (561)
Q Consensus 395 ~dalReAa~~Y~~L~~l~~e~s---~~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~r~~~~ 455 (561)
.+-|.+|+.-|.+|..-...+. +|++.++ -.+.+|.+|..++-++|+++..+++.|+.-.
T Consensus 136 VeLL~laa~fi~~Le~~LetIrwip~~~~~~~-~m~~aL~ki~~lvae~E~l~e~ilkwRe~~k 198 (277)
T PF15003_consen 136 VELLELAASFIEKLEEHLETIRWIPNFDENPS-NMDKALAKIDALVAECEELAEQILKWREQQK 198 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999998888877766554 5565554 6899999999999999999999999997654
No 83
>PHA03247 large tegument protein UL36; Provisional
Probab=65.44 E-value=10 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 008574 431 KKMASLLDKSERSIQRLVKLRNSVMHS 457 (561)
Q Consensus 431 ~km~~lldk~E~~~~~l~r~r~~~~~r 457 (561)
.-|.-|++-+++-+.+|=+||.--+.+
T Consensus 3109 salAlLi~ACr~i~r~lr~TR~~L~~~ 3135 (3151)
T PHA03247 3109 SALAVLIEACRRIRRQLRRTRHALLDR 3135 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777677776777654433
No 84
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.03 E-value=56 Score=26.38 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..++.|......|+.+|..|..++..+..++..|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555554444
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.77 E-value=2.3e+02 Score=31.43 Aligned_cols=61 Identities=11% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEF-----------VKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkEl-----------EkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+++++++.-...+..++.++..+...+ ..+....+++..+...+..++..++.++..+.
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666666665555433222 22333344444455555555555555555554
No 86
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.49 E-value=1.8e+02 Score=29.98 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVF 155 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELe 155 (561)
.+|..|+..-+....++..++.
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~ 25 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVE 25 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544433
No 87
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=64.12 E-value=80 Score=32.46 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=16.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
....+|...++.....+..++.++..+..+++.+.
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 33444555555555444444444444444444433
No 88
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.43 E-value=64 Score=29.72 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+.+++.++..+..++..++....++..||..|+-+-..++..+..+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888888888888888888888777777776653
No 89
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.15 E-value=59 Score=37.44 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=24.7
Q ss_pred hhhhhHHHHhhc--CCchhhHHHHHHHHhhhh-hhhhHHHhhh
Q 008574 377 SLADERAVLKHF--KWPEKKADAMREAAVEYR-DLKQLENEIS 416 (561)
Q Consensus 377 ~L~DEraVL~~F--~wPe~K~dalReAa~~Y~-~L~~l~~e~s 416 (561)
.|+|...=|+.. .|=.-|. +|..++..++ .+.+|..|+.
T Consensus 340 qLad~~l~lke~~~q~~qEk~-~l~~~~e~~k~~ie~L~~el~ 381 (546)
T PF07888_consen 340 QLADASLELKEGRSQWAQEKQ-ALQHSAEADKDEIEKLSRELQ 381 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 467776667777 6666665 6666676664 3556655554
No 90
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.11 E-value=62 Score=34.47 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=16.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
.-|..||..+++-.++=..||..|+..+..++
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555554455555555544443
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=61.93 E-value=52 Score=33.99 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL 178 (561)
..|+..+.......-+|+++|+.++.|+.+|.++++++..+..++
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455555555555555667777777777776666666655554433
No 92
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=61.83 E-value=11 Score=44.29 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=11.2
Q ss_pred HHHhhhcccCCCCCchHHHHHHHHHHHHH
Q 008574 411 LENEISSYRDDTNVPFGAALKKMASLLDK 439 (561)
Q Consensus 411 l~~e~s~~~d~p~~p~~~al~km~~lldk 439 (561)
+..++.++++--++-.+.-...|..|..+
T Consensus 668 ~~~~l~~v~~aa~i~~~~l~~~~~~l~~~ 696 (833)
T KOG1922|consen 668 FLSDLSNVESAAKIDLEVLAEECSDLKKG 696 (833)
T ss_pred ccchhcccchhhccCHHHHHHHHHHHHHH
Confidence 33344444433333333333333333333
No 93
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.50 E-value=1.1e+02 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=17.5
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~ 167 (561)
....|+.++.......++|+.++..++.|++.+...
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444444333
No 94
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=61.37 E-value=58 Score=30.78 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=42.9
Q ss_pred CccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 122 GKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV-----KAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 122 ~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElE-----kL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+.|++.-+.+-..+|++.+...+..++.|+-+...+..|.. ........++.|..++.++...+..++..+.
T Consensus 11 ~ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 11 AIVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666677777777777777666666666665555543 3333445556666666666666665554444
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.73 E-value=45 Score=39.34 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 164 L~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+..+..+||.|.+.|+.++...++++..++...
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888887777533
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.73 E-value=1.1e+02 Score=29.45 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=32.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
....++.++++..++.+.+++.++..++.......+.....+.+...+...+..+..++..+.
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665555555544444444444444444444444444443333
No 97
>PHA03247 large tegument protein UL36; Provisional
Probab=60.69 E-value=14 Score=48.83 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 008574 484 LAQMYMK 490 (561)
Q Consensus 484 la~~ymk 490 (561)
|++.||+
T Consensus 3098 l~RrY~r 3104 (3151)
T PHA03247 3098 LSRRYVR 3104 (3151)
T ss_pred HHHHHHh
Confidence 4455554
No 98
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=60.08 E-value=23 Score=37.64 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
.||..|.+++++|+.+..++|+|+++|+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=95 Score=37.48 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+|.++..+++.+++....+..++++|+.+.+.+..+.++++.|+..|+.+-
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777777888888888888888777788888877666543
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.67 E-value=86 Score=31.78 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
.++..|-..+..+++.+..+.+.++..|..+...+...+.++.+|+.+
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555666666666666666666666666653
No 101
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.39 E-value=2.3e+02 Score=30.12 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhh
Q 008574 153 EVFALKAEFVKAQSLNAELEKQ-------NKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkE-------NqeL~qQLsqAeaQIssL~s~ 195 (561)
.++++++-+.+|.+.|+.||+- ...+.+.|.++...++-|++-
T Consensus 106 ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESE 155 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESE 155 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667776652 335566677777777766653
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.32 E-value=1.5e+02 Score=30.59 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 151 QSEVFALKAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 151 QsELeaLkkElEkL~~~NeELEkENqeL 178 (561)
+..+..+..++..+...+..|+.....+
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3444444455555555555555444333
No 103
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.80 E-value=87 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKA 159 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkk 159 (561)
|..+|......|..|..|-+.|..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455566666566666555444443
No 104
>COG1084 Predicted GTPase [General function prediction only]
Probab=58.72 E-value=43 Score=36.43 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHhHHHHhhhhhhhHHHHhhcCCchhhHHHHHHHHhhhhhhhhHHHhhhcccCCCCCc---hHHHHHHH
Q 008574 357 AYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVP---FGAALKKM 433 (561)
Q Consensus 357 ~~~di~~v~~fv~wld~~L~~L~DEraVL~~F~wPe~K~dalReAa~~Y~~L~~l~~e~s~~~d~p~~p---~~~al~km 433 (561)
.|.++++|..|+.-|=..|--.=+=...|.+++|-.+..+.+.+-.. ..|. +.++|..+ .-+|+++|
T Consensus 68 ~~P~id~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi---------~~lk-~a~~~~~~~~lrR~a~GR~ 137 (346)
T COG1084 68 RFPSLDDLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYI---------RLLK-AAKDPKEANQLRRQAFGRV 137 (346)
T ss_pred hCCCccccChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHh-cCCChhHHHHHHHHHHHHH
Confidence 68899999999965544332222223448888999888777644322 1121 34445432 23899999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008574 434 ASLLDKSERSIQRLVKLRN 452 (561)
Q Consensus 434 ~~lldk~E~~~~~l~r~r~ 452 (561)
.++++++...+.-|...|+
T Consensus 138 aSiik~i~~~L~fL~~~r~ 156 (346)
T COG1084 138 ASIIKKIDDDLEFLRKARD 156 (346)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 9999999998877766664
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.27 E-value=81 Score=33.53 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqe 177 (561)
.++.+++...+.+..++..++..+.+|.+.+..+..+++.|...
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443333
No 106
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.17 E-value=44 Score=26.10 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
|..+.-|+...+.|+.+.+.|...++.|..|...|...+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777777777777777777777766554
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.90 E-value=65 Score=35.94 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=30.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+...+++.++.........|+.+|..+..++..+..+..+.+.+.+++.+.++.+...+..|+
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444455555555555554444444444444555555555554444444
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.83 E-value=70 Score=37.33 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=30.6
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEk 173 (561)
.+...++..+++.-+..+++|+.++..++.+++.|..+.+++.+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777776666555544
No 109
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=57.74 E-value=22 Score=39.74 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=6.5
Q ss_pred CCChhhhhhh
Q 008574 283 KTPSFAQLYH 292 (561)
Q Consensus 283 rsP~~veLy~ 292 (561)
-.+++++.|.
T Consensus 369 ~~~pl~~~~p 378 (518)
T KOG1830|consen 369 TNPPLCNPFP 378 (518)
T ss_pred CCCCCCCCCc
Confidence 3456677777
No 110
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.59 E-value=34 Score=30.85 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
+.+++.++..++.++++++.+|..|+.|...|+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555443
No 111
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.38 E-value=51 Score=40.35 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 121 ~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
-.+|.++. .+..+|++.|+...+.+.+.-++++++..+..++......+..+...+..++.....+...++
T Consensus 670 ~k~~~~~~--~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~ 740 (1200)
T KOG0964|consen 670 LKNVNESR--SELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQ 740 (1200)
T ss_pred HhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45666776 888999999999998888888889988888888888888888888888888888887776665
No 112
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.34 E-value=85 Score=34.75 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccCCh-hhHHHHHHHHh
Q 008574 179 VEDLVAAEAKIASLSSREQREAVGEYQSP-KFKDVQKLIAN 218 (561)
Q Consensus 179 ~qQLsqAeaQIssL~s~~~e~~~~e~qs~-~~KkIQklia~ 218 (561)
+.++..++.+++.++ +-++||+. +.+||++.+..
T Consensus 275 q~Ei~~LKqeLa~~E------EK~~Yqs~eRaRdi~E~~Es 309 (395)
T PF10267_consen 275 QNEIYNLKQELASME------EKMAYQSYERARDIWEVMES 309 (395)
T ss_pred HHHHHHHHHHHHhHH------HHHHHHHHHHHhHHHHHHHH
Confidence 456666676665555 34667776 66888887654
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.09 E-value=1.6e+02 Score=27.41 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=29.7
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSE-------VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsE-------LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
...-+|-...+........|..+ +..+...++.+.....++++++..++....++..++..+.
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544444444444444433 4444444444444455555555544445555555554444
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.87 E-value=45 Score=38.06 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=22.7
Q ss_pred hhhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHH
Q 008574 317 AHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQK 352 (561)
Q Consensus 317 a~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~ 352 (561)
+..+++.+|++ -..+|..||..+..-+..|...
T Consensus 459 ~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 491 (585)
T PRK14950 459 ADGDVLEQLEA---IWKQILRDVPPRSPAVQALLSS 491 (585)
T ss_pred CcchhHHHHHH---HHHHHHHHHhhcCHHHHHHHhC
Confidence 45678888884 4567888888776666555544
No 115
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.69 E-value=82 Score=28.36 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=33.9
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFAL--KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaL--kkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
....+|.+++...++-...++.++..+ .+++..++....+++.+.+.+..++.....++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445667677766666666666666666 66666555555555555554444444444333
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=56.58 E-value=1.2e+02 Score=32.63 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=21.6
Q ss_pred HhHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLM-LSENLVKDLQSEVFALKAEFVKAQSL 167 (561)
Q Consensus 131 Kkk~ELeeKLd-lnEnlikELQsELeaLkkElEkL~~~ 167 (561)
+.+..|..+++ ..+.+.+.|...|.+++.|+-.+...
T Consensus 91 keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~ 128 (310)
T PF09755_consen 91 KEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQ 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556655553 33445567777777777666655443
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=56.54 E-value=1.1e+02 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+..|..++..|...|.+|..++..|..++..++.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444555555555555555555544443
No 118
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.28 E-value=90 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhcc
Q 008574 332 LLAIKADIETKGGFINSLIQKVLAAA 357 (561)
Q Consensus 332 l~aIk~DVe~~~~~I~~L~~~i~~~~ 357 (561)
+..+..+++....-|..|..+|....
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667766777777777777643
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.13 E-value=80 Score=33.70 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 008574 133 KKEFEEKLM 141 (561)
Q Consensus 133 k~ELeeKLd 141 (561)
+..|+.++.
T Consensus 181 ~~~L~~e~~ 189 (312)
T smart00787 181 KDALEEELR 189 (312)
T ss_pred HHHHHHHHH
Confidence 333443333
No 120
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.99 E-value=1.2e+02 Score=28.07 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhh
Q 008574 181 DLVAAEAKIASL 192 (561)
Q Consensus 181 QLsqAeaQIssL 192 (561)
++..++..|.+|
T Consensus 106 e~~~~~~r~~dL 117 (132)
T PF07926_consen 106 ELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.53 E-value=2.6e+02 Score=28.97 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..|+..+.....-+-+|+.+.+.|+.|+.+|++++....-++..+..
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555555555667777777777877787777777777766654
No 122
>PHA03211 serine/threonine kinase US3; Provisional
Probab=54.99 E-value=16 Score=40.34 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=3.8
Q ss_pred ccchhhH
Q 008574 468 MLDSGII 474 (561)
Q Consensus 468 mlD~gii 474 (561)
+.|||+.
T Consensus 301 L~DFGla 307 (461)
T PHA03211 301 LGDFGAA 307 (461)
T ss_pred EcccCCc
Confidence 4466654
No 123
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=54.90 E-value=32 Score=37.85 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=18.4
Q ss_pred hhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHH
Q 008574 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQ 351 (561)
Q Consensus 319 ~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~ 351 (561)
-||-.=|+=|+.|..++-.---....|...+++
T Consensus 260 vDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~K 292 (457)
T KOG0559|consen 260 VDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSK 292 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCceeeehhHHHH
Confidence 366666777778877654333333345444443
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.44 E-value=3.7e+02 Score=30.54 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=8.7
Q ss_pred HHHHHhHhHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVF 155 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELe 155 (561)
+.--++.-.+++.+|+..|.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333443444455554444
No 125
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=53.98 E-value=1.8e+02 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHH
Q 008574 330 AHLLAIKADIETKGGFINSLIQKVL 354 (561)
Q Consensus 330 a~l~aIk~DVe~~~~~I~~L~~~i~ 354 (561)
.+....+.-|+.|...+..|+.+|+
T Consensus 158 ~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 158 QQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777777766
No 126
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.75 E-value=1e+02 Score=32.90 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=37.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKA-----EFVKAQSL--NAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkk-----ElEkL~~~--NeELEkENqeL~qQLsqAeaQI 189 (561)
.+-.|-+.+|..-+.+|.+|+++|..+++ |=..+..+ ..|..+|+++|++.+...+.-+
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567778888899999999999886553 22333332 3344456666655555555444
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.41 E-value=1.2e+02 Score=28.23 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=12.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAE 160 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkE 160 (561)
.+.|+..|-.-+.++..++.++..+..+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 128
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.37 E-value=56 Score=32.57 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=41.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..-+-.+|+.|+.++..+++.-........++..||..|..-+..+..++..|+.
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455667777888888777777777777777788888888888888888877775
No 129
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=53.19 E-value=41 Score=37.36 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHhHhHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 139 KLMLSENLVKDLQ-SE----VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 139 KLdlnEnlikELQ-sE----LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
...+++.+.+.|+ ++ +.+|+.. .+.+.+|++-+.+...+...+-.+-+.+..
T Consensus 46 ~vVlnC~I~kGlkYnkatptFHqWR~a-rqvyGLnFqs~~DA~~Fa~~~~~A~e~l~~ 102 (409)
T KOG4590|consen 46 QVVLNCLILKGLKYNKATPTFHQWRDA-RQVYGLTFQSEQDARAFARGVPVAIEALSG 102 (409)
T ss_pred ccccccccccCcceeecccchhhhhhh-hhhhcccccChhhhhhhhhhhhhhhhhhcc
Confidence 3457777888886 33 4489988 888999999888877777767666666643
No 130
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.18 E-value=1.1e+02 Score=32.25 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=33.5
Q ss_pred HhccccCHHHHHHHHHhHHHHhhhhhhhHHHHhhc--CCchhhHHHHHHHHhhhhhhhhHHHhhhcc
Q 008574 354 LAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF--KWPEKKADAMREAAVEYRDLKQLENEISSY 418 (561)
Q Consensus 354 ~~~~~~di~~v~~fv~wld~~L~~L~DEraVL~~F--~wPe~K~dalReAa~~Y~~L~~l~~e~s~~ 418 (561)
.+.+-.|+.++...++.|++ ++| +|=..+++-+++|.-.|..-...+.+....
T Consensus 144 ~~LS~~dl~e~~~~l~DLes------------a~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~ 198 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLES------------AKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEK 198 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHH------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555553 344 788889999999988877655555555444
No 131
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.01 E-value=1.2e+02 Score=31.50 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=9.6
Q ss_pred Chhhhhhhhhhccc
Q 008574 285 PSFAQLYHSLTKQV 298 (561)
Q Consensus 285 P~~veLy~sLk~K~ 298 (561)
|.+..+|.-+++..
T Consensus 174 ~ell~~yeri~~~~ 187 (239)
T COG1579 174 PELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHhcC
Confidence 56677777777654
No 132
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=52.53 E-value=1.7e+02 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008574 169 AELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 169 eELEkENqeL~qQLsqAeaQIss 191 (561)
.+++...++++..+..+++++.+
T Consensus 24 ~~~e~~Lq~~E~~l~iLEaKL~S 46 (148)
T PF10152_consen 24 SDMEQRLQRLEATLNILEAKLSS 46 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444455555555533
No 133
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=52.12 E-value=26 Score=37.33 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHhhh----------cccCCCCCchHHHHHHHHHHHHHHH
Q 008574 392 EKKADAMREAAVEYRDLKQLENEIS----------SYRDDTNVPFGAALKKMASLLDKSE 441 (561)
Q Consensus 392 e~K~dalReAa~~Y~~L~~l~~e~s----------~~~d~p~~p~~~al~km~~lldk~E 441 (561)
...++-.|++...|..++..+.++. +..-||.+..+..+.-+..|++..+
T Consensus 222 ~~~~~~A~~~~~~~~~~~~~e~~L~~~c~~~l~L~~L~kd~sit~~~mi~cc~rLl~~~~ 281 (313)
T PF14688_consen 222 SENADEARERMQRYNRLKEEEEQLIERCRKELGLRSLTKDPSITPDQMISCCRRLLEQSE 281 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhcccCCCCCHHHHHHHHHHHHhccc
Confidence 3455556666666666666655544 3344688887777777777776443
No 134
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=51.96 E-value=77 Score=33.19 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 143 nEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+..+++|..|-..|+.|.+.|...|.-|-.+|++|..++..+..++.++..
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 3344445555555555555555555555555666666666666666665554
No 135
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=51.92 E-value=1.3e+02 Score=32.55 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=37.2
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
...+...-.+|.-+-.++++|..++..+.+++..+.+.+..... .+..+..++..+.
T Consensus 86 ~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~-------~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 86 DDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKK-------FLDSLPPQLKSLK 142 (355)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHH
Confidence 55677778888888878888888877777776665555544444 4444554444443
No 136
>PRK04406 hypothetical protein; Provisional
Probab=51.78 E-value=1.3e+02 Score=25.86 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008574 181 DLVAAEAKI 189 (561)
Q Consensus 181 QLsqAeaQI 189 (561)
++..+..++
T Consensus 47 ql~~L~~rl 55 (75)
T PRK04406 47 QMKYVVGKV 55 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 137
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=51.58 E-value=55 Score=37.64 Aligned_cols=45 Identities=27% Similarity=0.136 Sum_probs=23.7
Q ss_pred hhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHH
Q 008574 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDL 364 (561)
Q Consensus 318 ~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v 364 (561)
.-+||-++.|-..|+= |+-=.-.|..+=..|...|..|.. ||.|+
T Consensus 362 ~e~Iv~~~~nEyevvY-iKpLAg~YktiKKqlenhv~afnt-Nitdm 406 (574)
T PF07462_consen 362 PENIVPEGINEYEVVY-IKPLAGMYKTIKKQLENHVNAFNT-NITDM 406 (574)
T ss_pred hhhhhcCcCCccceEE-ecchHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 4578888888665542 333333333333444455555443 55554
No 138
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.31 E-value=1.1e+02 Score=38.29 Aligned_cols=65 Identities=28% Similarity=0.313 Sum_probs=40.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
+.-.+|+.+|+...+.+.+.+.++..|+.++..+.+...+.+++...++.+...+..++..+..+
T Consensus 521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777766666666677777777777666666666666655555555555555444443
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.87 E-value=1.4e+02 Score=27.75 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEk 173 (561)
++.++.|+.+++.++..+....+.+..
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 140
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.62 E-value=90 Score=32.73 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
|+.|++.|+...+.|+..|.++..+...++++|..++.
T Consensus 109 L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 109 LQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 33444444444444444444444443334444433333
No 141
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=50.42 E-value=1.4e+02 Score=31.62 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008574 158 KAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 158 kkElEkL~~~NeELEkENqeL 178 (561)
..++.++..+|.+++.+|+.|
T Consensus 51 esqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 142
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.07 E-value=66 Score=34.25 Aligned_cols=44 Identities=30% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~ 197 (561)
...|+.|+..++..-+.+++-.+++.+++...+.+|..|+++.+
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~ 105 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN 105 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 44566666666666677777777777777777777777777554
No 143
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.04 E-value=1.8e+02 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=15.9
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
...++|..++......+..|+..+..++.+++.+.
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444444444444444444444433
No 144
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.89 E-value=1.7e+02 Score=32.83 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=31.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..-.+|..+|..-+....++..|+..+..|-+.+.....+.|-+.++|+.+..++..++
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666555555544444444444444444444443
No 145
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=49.80 E-value=28 Score=28.93 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
.|++.|+..+..|+.+|.+||.||.-|++
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777778888888888888886665
No 146
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=49.79 E-value=1.5e+02 Score=27.56 Aligned_cols=55 Identities=27% Similarity=0.212 Sum_probs=27.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+......++.++..+..+..++..+...|-.++.+...++.++...-.++..|..
T Consensus 22 ~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~ 76 (150)
T PF07200_consen 22 FVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELES 76 (150)
T ss_dssp HGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556666666666666666666655555555555555555555544444
No 147
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.74 E-value=53 Score=29.18 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 162 EkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
.++..+|+.|..||+.|..+...++.|+...+-+.
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577888888888888888888886655443
No 148
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.65 E-value=1.1e+02 Score=29.46 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=26.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQS---LNAELEKQNKKLVEDLV 183 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~---~NeELEkENqeL~qQLs 183 (561)
...++......+..|+.+|....+.++.|.. -+++|..+...|+.+..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666655555555 25555555555555555
No 149
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.32 E-value=81 Score=32.85 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
....++..+...|++||..|+.++.+++.++..|..
T Consensus 215 ~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 215 QKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333666777888888998888888888888877764
No 150
>PRK09039 hypothetical protein; Validated
Probab=49.30 E-value=72 Score=34.27 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+..+..++........+...+...|++|+..++.|+..+++
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555666666666666655554
No 151
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=49.15 E-value=45 Score=31.80 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 167 LNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 167 ~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+..+||+++.+|.+||.+++.+++.+.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999887766
No 152
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.09 E-value=1.3e+02 Score=35.84 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..|..++..-++.++.++.++...+.|.+.|...+.++.+++..+..+...++.++.+++-
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555666665555555555555555555555555544443
No 153
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=49.08 E-value=23 Score=31.00 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=40.9
Q ss_pred HHHHHhhhhhhhhHHHhhhc---ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 008574 398 MREAAVEYRDLKQLENEISS---YRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDC 461 (561)
Q Consensus 398 lReAa~~Y~~L~~l~~e~s~---~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~r~~~~~ryk~~ 461 (561)
++.....|.+|+.+...+++ +-.+-=+ -|.+|+||+..|=..|..|.+|.-.-+....+|+-|
T Consensus 2 ~~~i~~aY~~Lr~~~~~~~~~~n~p~~~f~-sd~~LKk~A~~LP~te~eF~~l~g~~~~~~~kFkyF 67 (80)
T PF11408_consen 2 QRHITSAYEKLREISINLSNRMNPPNDNFM-SDTILKKMATKLPTTEEEFSKLVGINEQQRKKFKYF 67 (80)
T ss_dssp --HHHHHHHHHHHHHHHHHHSSSS--S-SS--HHHHHHHHHH---SHHHHGGGS---HHHHHHGGGT
T ss_pred cchHHHHHHHHHHHHHHHhhccCCCccccC-CHHHHHHHHHHCCCCHHHHHHhcCCcHHHHHHHHHH
Confidence 45567789999999888874 2222223 479999999999999999998877777777888754
No 154
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.04 E-value=35 Score=32.79 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHhccccCHHHHHHHH-HhHHHHhhhhhhhHHHHhhcCCchhhHHHHHH
Q 008574 342 KGGFINSLIQKVLAAAYTNIEDLLEFV-DWLDKELSSLADERAVLKHFKWPEKKADAMRE 400 (561)
Q Consensus 342 ~~~~I~~L~~~i~~~~~~di~~v~~fv-~wld~~L~~L~DEraVL~~F~wPe~K~dalRe 400 (561)
..+|++.|...++...-.|.+|+..|. .+.|.....=-+|.+|.+.+|.|..=+..+..
T Consensus 3 k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999988888888888554 56666555555789999999999765555553
No 155
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=47.45 E-value=60 Score=30.78 Aligned_cols=50 Identities=26% Similarity=0.273 Sum_probs=39.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
....+++..+..-+...++|+.|+.....|+..|....+++...|..|..
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44577888888888888888888888888888888887777777776654
No 156
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.32 E-value=2.5e+02 Score=30.02 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~NeEL 171 (561)
|.+.+.+...++.+|......|+.|+..+++...++
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444444444444444445555555555444443
No 157
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=47.16 E-value=1.3e+02 Score=37.21 Aligned_cols=134 Identities=20% Similarity=0.178 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHH--HHhccccCHHHH----HHHHHhHHHH---hhhhhhhHHHHhhcCCch-hhHHHHHH
Q 008574 331 HLLAIKADIETKGGFINSLIQK--VLAAAYTNIEDL----LEFVDWLDKE---LSSLADERAVLKHFKWPE-KKADAMRE 400 (561)
Q Consensus 331 ~l~aIk~DVe~~~~~I~~L~~~--i~~~~~~di~~v----~~fv~wld~~---L~~L~DEraVL~~F~wPe-~K~dalRe 400 (561)
+..+++..+.+..--+++|+.. ..+..+..++++ .++.+-+|.. ++.|-+|--.+++-.=|. ..-++.|+
T Consensus 704 ~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~ 783 (1074)
T KOG0250|consen 704 HIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGRE 783 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666662 444444444443 3556666654 667777777777664443 33566666
Q ss_pred HHhhh-hhhhhH-------HHhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hcccccCCCc
Q 008574 401 AAVEY-RDLKQL-------ENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVM----HSYKDCKIPV 465 (561)
Q Consensus 401 Aa~~Y-~~L~~l-------~~e~s~~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~r~~~~----~ryk~~~Ip~ 465 (561)
++..- .+|+.+ +.++.+.+|.-. -...-++-...-+.++|.-...+.+.+.+.+ ..|-+-+|-+
T Consensus 784 ~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~-HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei 859 (1074)
T KOG0250|consen 784 KLQGEISKLDALKEELKLREDKLRSAEDEKR-HYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEI 859 (1074)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchh
Confidence 55432 223333 444555555442 2222222133344445555555555554433 3444444444
No 158
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=45.78 E-value=6.2e+02 Score=30.59 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=35.9
Q ss_pred hhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHHHHHHhHHHHhhhhhhhHHH
Q 008574 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAV 384 (561)
Q Consensus 318 ~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~~fv~wld~~L~~L~DEraV 384 (561)
|-..|.=-+-|+-|+.+.-.- .-+.|.+|..+|.+ |.+-..-|+.+|..||.|.--
T Consensus 843 hl~~~~~nttt~eh~eall~Q---reGElthlq~e~~~--------le~~Rs~laeElvklT~e~e~ 898 (961)
T KOG4673|consen 843 HLKSITPNTTTSEHYEALLRQ---REGELTHLQTELAS--------LESIRSSLAEELVKLTAECEK 898 (961)
T ss_pred HHhhhcCCCchHHHHHHHHHh---hcchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566666554433 45667788877764 455667789999999998433
No 159
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=45.65 E-value=26 Score=41.61 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=4.0
Q ss_pred hhhhhhhcC
Q 008574 68 KSRRALILN 76 (561)
Q Consensus 68 ~~~r~~~~n 76 (561)
|-||..-+|
T Consensus 730 KeRRr~Si~ 738 (1106)
T KOG0162|consen 730 KERRRYSIN 738 (1106)
T ss_pred HHHHHHHHH
Confidence 444444444
No 160
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=45.56 E-value=20 Score=34.03 Aligned_cols=6 Identities=33% Similarity=0.777 Sum_probs=3.1
Q ss_pred hhhhhh
Q 008574 288 AQLYHS 293 (561)
Q Consensus 288 veLy~s 293 (561)
|.+|-+
T Consensus 49 V~lY~~ 54 (133)
T PRK10781 49 VRLYTN 54 (133)
T ss_pred eEEEcC
Confidence 455653
No 161
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.50 E-value=1.3e+02 Score=26.39 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008574 174 QNKKLVEDLVAAEAKI 189 (561)
Q Consensus 174 ENqeL~qQLsqAeaQI 189 (561)
+...+..++..++.++
T Consensus 75 e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 75 EVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 162
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.46 E-value=1.7e+02 Score=29.37 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 008574 132 KKKEFEEKL 140 (561)
Q Consensus 132 kk~ELeeKL 140 (561)
.+.+|..+.
T Consensus 121 ~NLeLl~~~ 129 (221)
T PF05700_consen 121 ENLELLSKY 129 (221)
T ss_pred HHHHHHHHH
Confidence 333444433
No 163
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.92 E-value=2e+02 Score=24.61 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
++++.....|+........++..|...+..|..+|..+..++..|.
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666677777777777777777777776553
No 164
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=44.74 E-value=38 Score=37.22 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=5.3
Q ss_pred CCCCCCChh
Q 008574 279 AATQKTPSF 287 (561)
Q Consensus 279 ~~~~rsP~~ 287 (561)
..++|+|=+
T Consensus 108 ~~~~~~pv~ 116 (376)
T PRK13855 108 PRPEETPIF 116 (376)
T ss_pred cccccCceE
Confidence 456666654
No 165
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.45 E-value=2e+02 Score=24.42 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.-+..++.|...|..+...+..|...|.+....|...|..+
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555333
No 166
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=44.33 E-value=1.3e+02 Score=30.59 Aligned_cols=99 Identities=27% Similarity=0.340 Sum_probs=66.0
Q ss_pred hhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHHHHHHhHHHHhhhhhhhHHHHhhcCCchhhHHHHH
Q 008574 320 SIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMR 399 (561)
Q Consensus 320 ~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~~fv~wld~~L~~L~DEraVL~~F~wPe~K~dalR 399 (561)
.+++++.+ ....+++-.-|. -||+++..+-.-...+++++..-+.-+|..|=. .+..||+.|+ --
T Consensus 85 ~lLA~~~~-i~li~~ls~aI~----eiNE~K~~ly~~~~~~~e~~~~~~~~ies~l~~-----~~~~~f~~~~-----w~ 149 (212)
T PF07307_consen 85 QLLAESGD-ISLIRALSEAIK----EINELKMSLYQKKKETAEEYLESVVTIESALFQ-----SFAEHFGKPE-----WK 149 (212)
T ss_pred HHHHhCCC-HHHHHHHHHHHH----HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHH-----HHHHHHhHHH-----HH
Confidence 35555544 233333333333 478888888887778888888877777765533 2356776665 33
Q ss_pred HHHhhhhhhhhHHHhhhcccCCCCCchHHHHHHH
Q 008574 400 EAAVEYRDLKQLENEISSYRDDTNVPFGAALKKM 433 (561)
Q Consensus 400 eAa~~Y~~L~~l~~e~s~~~d~p~~p~~~al~km 433 (561)
+-+..|.-|++|..|...|...-..|+-.++..+
T Consensus 150 ~l~~~~l~~~rL~~E~~~~~~~~~s~l~~~~~~~ 183 (212)
T PF07307_consen 150 ELIEEFLLLKRLLKERELYQEGGNSPLFEALKHI 183 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4555666688999999999766666787777776
No 167
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=44.31 E-value=3.4e+02 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=19.8
Q ss_pred hhcccccCCCcccccchhhHHHHHHHHHHHH
Q 008574 455 MHSYKDCKIPVDWMLDSGIISKIKQASMKLA 485 (561)
Q Consensus 455 ~~ryk~~~Ip~~wmlD~gii~kiK~asv~la 485 (561)
---|+.+|+|..|+.. -+..||.+++..+
T Consensus 114 rE~Y~sLgVP~~~~~~--~~~~mk~aa~~~~ 142 (177)
T CHL00172 114 KETYIALGVPANSSAR--AVSIMKASAVAFI 142 (177)
T ss_pred HHHHHHHCCCchHHHH--HHHHHHHHHHHHh
Confidence 3569999999999865 3455555555444
No 168
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.25 E-value=1.8e+02 Score=29.21 Aligned_cols=80 Identities=11% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhhhh--ccCCh
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSL--NAELEKQNKKLVEDLVAAEAKIASLSSREQ-------REAVG--EYQSP 207 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~--NeELEkENqeL~qQLsqAeaQIssL~s~~~-------e~~~~--e~qs~ 207 (561)
++..-+...+.|+..|.....|+..|... ..+++++.+.|..++.-....+.++++..+ +..-. ++-.+
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCK 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33333333444445555555555544443 456666666666666666666665555432 11222 33456
Q ss_pred hhHHHHHHHHh
Q 008574 208 KFKDVQKLIAN 218 (561)
Q Consensus 208 ~~KkIQklia~ 218 (561)
.|+++.++..+
T Consensus 167 ~wrk~krmf~e 177 (201)
T KOG4603|consen 167 EWRKRKRMFRE 177 (201)
T ss_pred HHHHHHHHHHH
Confidence 88888775443
No 169
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.02 E-value=1.8e+02 Score=31.06 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=37.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+.++.|........+++.++..+..+.+........++.+....+..+..+..=+..|.+
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 4444555555555555556666666666666666666666666666666666666666664
No 170
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.92 E-value=2.7e+02 Score=30.04 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEk 173 (561)
.+.+|.++..+....-..|...+.
T Consensus 118 te~~l~~y~~~n~~~I~~n~~~~~ 141 (309)
T TIGR00570 118 TKKKIETYQKENKDVIQKNKEKST 141 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555666665555555444443
No 171
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.57 E-value=1.6e+02 Score=31.53 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 142 lnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..-..++.-+.|-+.+..|.+.|..+|++|..+...|..++..++.=|
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666655555555555555554433
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.55 E-value=2.8e+02 Score=27.74 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLs 183 (561)
..+..+..|...+..-...++.|+.+|+.++.
T Consensus 48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433
No 173
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.18 E-value=1.5e+02 Score=36.70 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=62.3
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhh
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~ 209 (561)
++...+|..-+.-+.....-|+.++..+..++++.-....+++....+...++..+.+.+++++. ..++...++--+|
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~--~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKR--ELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 56677777777777777778888888888888888888888888777788888888877777774 2223444444555
Q ss_pred ---HHHHHHHHh
Q 008574 210 ---KDVQKLIAN 218 (561)
Q Consensus 210 ---KkIQklia~ 218 (561)
+++|-+|+.
T Consensus 474 REE~~l~~~i~~ 485 (1200)
T KOG0964|consen 474 REEKKLRSLIAN 485 (1200)
T ss_pred HHHHHHHHHHHH
Confidence 555656655
No 174
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=42.93 E-value=54 Score=33.08 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
...+|.|+.-|++.|+..+.++.+|+.+
T Consensus 53 L~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 53 LAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666654
No 175
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.71 E-value=69 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENq 176 (561)
.++.++..++.+++++...+++|+.+..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 176
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=42.43 E-value=42 Score=37.81 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.|..|+..+..-..|...|++...+||.+|.-|.+||.++...+.+-
T Consensus 273 Yid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 273 YIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred HHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhc
Confidence 33445555666667777777777777777777777777777766443
No 177
>PRK03918 chromosome segregation protein; Provisional
Probab=42.34 E-value=1.9e+02 Score=33.97 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=9.8
Q ss_pred CCCCchHHhHHHHHH
Q 008574 526 VGGLDSETLCAFEEI 540 (561)
Q Consensus 526 AGG~D~~t~~afeEl 540 (561)
.+|+|....+.+.++
T Consensus 822 ~~~lD~~~~~~l~~~ 836 (880)
T PRK03918 822 TPFLDEERRRKLVDI 836 (880)
T ss_pred CcccCHHHHHHHHHH
Confidence 388898865555443
No 178
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.30 E-value=1.7e+02 Score=27.71 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=27.2
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENq 176 (561)
+.+..|+..|..+...+..|+.|+......++.......+|++..+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766666666666555555544444444444433
No 179
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.21 E-value=1.4e+02 Score=24.83 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=6.9
Q ss_pred HHHHHHHhHhHHHHHH
Q 008574 134 KEFEEKLMLSENLVKD 149 (561)
Q Consensus 134 ~ELeeKLdlnEnlikE 149 (561)
.+|+.++.-.+..+.+
T Consensus 7 ~~LE~~la~qe~~ie~ 22 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEE 22 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 180
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.74 E-value=1.7e+02 Score=26.40 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
....++.+++.+..++++++.+|..|..++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666666665555555444
No 181
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=41.66 E-value=8.7 Score=42.06 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=5.5
Q ss_pred HHHHhhhhhh
Q 008574 510 ALLLQGLHFA 519 (561)
Q Consensus 510 ~lL~qgvrFA 519 (561)
+.-=|.||||
T Consensus 280 KVtnqvfr~a 289 (386)
T PF01698_consen 280 KVTNQVFRYA 289 (386)
T ss_dssp S--HHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555777776
No 182
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=41.51 E-value=50 Score=26.65 Aligned_cols=53 Identities=25% Similarity=0.398 Sum_probs=32.9
Q ss_pred HhhhhhhHHHHHH-HHHhccccCHHHHHHHHHhHHHH-h--hhhhhhHHHHhhc-CCc
Q 008574 339 IETKGGFINSLIQ-KVLAAAYTNIEDLLEFVDWLDKE-L--SSLADERAVLKHF-KWP 391 (561)
Q Consensus 339 Ve~~~~~I~~L~~-~i~~~~~~di~~v~~fv~wld~~-L--~~L~DEraVL~~F-~wP 391 (561)
+..-..|+.++.. .+..+.-.+..+|..|+.|+..+ + +++.--.++|++| .|=
T Consensus 23 ~~~l~~f~~~~~~~~~~~~~~i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~~~l 80 (84)
T PF02899_consen 23 RRDLRRFIRWLEEHGIIDWEDITEEDVRDFLEYLAKEGLSPSTINRRLSALRAFFRFL 80 (84)
T ss_dssp HHHHHHHHHHHHHTTS-CGGG--HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Confidence 3333456666666 55556666778889999998863 3 3466677778888 763
No 183
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.43 E-value=2.1e+02 Score=37.88 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=42.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+..+|...++.....-..+..++..+...++.+....++++++|+.+.+++..+..++.++....
T Consensus 1450 ~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1450 KLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554555555666667777777777777777888888888777777777666544
No 184
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.35 E-value=2.6e+02 Score=26.57 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (561)
Q Consensus 120 ~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~ 166 (561)
+..+++..+ ....+|++.+...+..|..|+..+..+..+++++..
T Consensus 12 a~~r~e~~e--~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 12 AQDRAEELE--AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 555666666666666666666555555554444443
No 185
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.89 E-value=1.7e+02 Score=28.04 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=36.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
....+|.+|++--...++.++.++..+..|.+.|..+....+.....|++-+
T Consensus 33 ~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 33 SIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777788888888888888777776666666555554443
No 186
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.58 E-value=3.3e+02 Score=27.51 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008574 144 ENLVKDLQ 151 (561)
Q Consensus 144 EnlikELQ 151 (561)
++-+.+|+
T Consensus 140 E~ki~eLE 147 (237)
T PF00261_consen 140 ESKIKELE 147 (237)
T ss_dssp HHHHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 187
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.41 E-value=1.3e+02 Score=25.60 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.-+.+|...+.+++.+...+...+..+..++.+|+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444
No 188
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.30 E-value=2.8e+02 Score=26.83 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=17.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFAL-KAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaL-kkElEkL~~~NeELEkENqeL 178 (561)
.+++.-...-...+.+|+.++... +.+...+...++.|+.+...|
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444422 233333344444444443333
No 189
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=40.28 E-value=3.7e+02 Score=26.47 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=20.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL 178 (561)
+...-+..+++......+-|-.-|....+|...+....++..+|...|
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~L 131 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443344443444444444444444444444443333
No 190
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.22 E-value=2e+02 Score=35.72 Aligned_cols=8 Identities=50% Similarity=0.567 Sum_probs=5.3
Q ss_pred cccccccc
Q 008574 49 ELKARAKS 56 (561)
Q Consensus 49 ~~~~ra~s 56 (561)
+.+.|||+
T Consensus 382 EYA~RAKn 389 (1041)
T KOG0243|consen 382 EYAHRAKN 389 (1041)
T ss_pred HHHHHhhh
Confidence 45568877
No 191
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.14 E-value=3.1e+02 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
....+...+.|++.+.....+.|++.+++++++...++.+..|+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666677777666666666665555
No 192
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.12 E-value=2.7e+02 Score=32.79 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=16.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~ 167 (561)
++.|.+...+....|+.++..++++++.....
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~ 289 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555554444
No 193
>PRK15313 autotransport protein MisL; Provisional
Probab=39.85 E-value=37 Score=41.28 Aligned_cols=8 Identities=13% Similarity=0.384 Sum_probs=3.8
Q ss_pred HHHhhhhh
Q 008574 511 LLLQGLHF 518 (561)
Q Consensus 511 lL~qgvrF 518 (561)
|.||+|++
T Consensus 830 Liwq~V~~ 837 (955)
T PRK15313 830 VVWMGVQA 837 (955)
T ss_pred EEEEEccC
Confidence 44444444
No 194
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.45 E-value=2.1e+02 Score=29.82 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
+.+|..|+..+..+...|+.|...+...+..+..++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333
No 195
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.15 E-value=3.4e+02 Score=27.25 Aligned_cols=20 Identities=10% Similarity=-0.195 Sum_probs=7.9
Q ss_pred CCchhhHHHHHHHHhhhhhh
Q 008574 389 KWPEKKADAMREAAVEYRDL 408 (561)
Q Consensus 389 ~wPe~K~dalReAa~~Y~~L 408 (561)
|.+-..+|....-..+|.-|
T Consensus 276 ~~~~~~l~~~~~l~nl~~~l 295 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLLNLL 295 (302)
T ss_pred CCCCCcCCchhhHHHHHHHH
Confidence 33333344444444444333
No 196
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=39.10 E-value=3.7e+02 Score=28.69 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHhhhhhhhhHHHhhh----cccCCCCCchHHHHHHHH-----------HHHHHHHHHHHHHHHhhhh
Q 008574 391 PEKKADAMREAAVEYRDLKQLENEIS----SYRDDTNVPFGAALKKMA-----------SLLDKSERSIQRLVKLRNS 453 (561)
Q Consensus 391 Pe~K~dalReAa~~Y~~L~~l~~e~s----~~~d~p~~p~~~al~km~-----------~lldk~E~~~~~l~r~r~~ 453 (561)
-..+++..|..+.+++++....++.. .|+|. -|-++|+ .+|.+-|.|+-+-+.+|-.
T Consensus 80 ~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~------LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~ 151 (276)
T PF12037_consen 80 AQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDE------LARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRA 151 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888777766554 55554 2334443 4555556666555555543
No 197
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=35 Score=38.42 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=4.2
Q ss_pred hhhhhhcCC
Q 008574 69 SRRALILNK 77 (561)
Q Consensus 69 ~~r~~~~n~ 77 (561)
.|--++||.
T Consensus 183 tr~e~ll~e 191 (483)
T KOG2236|consen 183 TRNEHLLDE 191 (483)
T ss_pred CCCchhhhc
Confidence 333455553
No 198
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.63 E-value=2.3e+02 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++|+.-++.|+++-......|.+|+
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 199
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.48 E-value=2.3e+02 Score=33.89 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhhHHHhhhcccC
Q 008574 395 ADAMREAAVEYRDLKQLENEISSYRD 420 (561)
Q Consensus 395 ~dalReAa~~Y~~L~~l~~e~s~~~d 420 (561)
-.|..+++.+..+|+.|..++..+..
T Consensus 362 ~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 362 KVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888776665543
No 200
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.43 E-value=1.9e+02 Score=25.00 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSL------------NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~------------NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++.|+.|+..++.+...+... ...|+.+...|...+.....||..|.
T Consensus 18 vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 18 VLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666555322 45566666777777777777776554
No 201
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.23 E-value=2.6e+02 Score=31.42 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=19.6
Q ss_pred hhhhhHHHHhcchhhHHHHHHHHhhhhhhHHH
Q 008574 317 AHSSIVGEIQNRSAHLLAIKADIETKGGFINS 348 (561)
Q Consensus 317 a~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~ 348 (561)
++...|+.+++=-.-+.+++..++..-.-+..
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~ 189 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTT 189 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777666666666666654444443
No 202
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=38.15 E-value=1.3e+02 Score=31.62 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=66.0
Q ss_pred cCCccCCCCC-----------cccceeeeecCCCCCccccCccccccccCCCCccccccchHhHHHHHHHHhHhHHHHHH
Q 008574 81 AEGAVGSHKD-----------DEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKD 149 (561)
Q Consensus 81 ~~~~~gs~~~-----------~~~~~~~~~~~r~g~~df~~r~~~~~~~~~~~~Ved~~~~Kkk~ELeeKLdlnEnlikE 149 (561)
++++-||.+- --....+..+||+| +|--.- +.++.+.+-++-+. -..||++++...+.++..
T Consensus 107 NRelyGsDF~~lle~~~q~~~~P~gl~vleR~~~G--~~yG~l--l~~~~ngq~l~Gd~---l~~eLqkr~~~v~~l~~q 179 (289)
T COG4985 107 NRELYGSDFIALLEFETQFKGAPQGLAVLERSRGG--QLYGKL--LRFDSNGQELDGDP---LERELQKRLLEVETLRDQ 179 (289)
T ss_pred chhhccchHHHHHHHHHHhhcCcchheeeeeccCc--chhhhe--eeeccCCCcccCcH---HHHHHHHHHHHHHHHHHH
Confidence 5677787432 11223346777777 222111 24554555555222 347899999888887765
Q ss_pred HH-----------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHH
Q 008574 150 LQ-----------SEVFALKAEFVKAQSL-------NAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (561)
Q Consensus 150 LQ-----------sELeaLkkElEkL~~~-------NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~Kk 211 (561)
+- ++++.|+-++.+++-. .+.+-.|..+|+..+.++..++..|++ ..+|++-.|.|
T Consensus 180 ~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~------e~~r~~l~~~D 253 (289)
T COG4985 180 VDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA------ELERQFLYLVD 253 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhceEEEEc
Confidence 42 3455555444443311 223334667777788888888877775 23455555555
No 203
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.05 E-value=3.9e+02 Score=28.75 Aligned_cols=9 Identities=44% Similarity=0.619 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 008574 132 KKKEFEEKL 140 (561)
Q Consensus 132 kk~ELeeKL 140 (561)
.+.+|.+.|
T Consensus 139 ~I~~L~k~l 147 (294)
T COG1340 139 KIKELRKEL 147 (294)
T ss_pred HHHHHHHHH
Confidence 334444444
No 204
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.83 E-value=2.6e+02 Score=26.44 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
..|++--+.-...++.|...|+.+...+++..+......+|..+++..+++...++.++...
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444445555566777777888888888888888888888888888888777777666653
No 205
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=37.75 E-value=2.4e+02 Score=31.96 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHhh
Q 008574 207 PKFKDVQKLIANK 219 (561)
Q Consensus 207 ~~~KkIQklia~k 219 (561)
.+||++++|..+|
T Consensus 205 ~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 205 SLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 4899999998774
No 206
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.75 E-value=2e+02 Score=33.85 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=37.9
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
...|+..-+.....+.-+|+.+-+.|+.|++++....++|.++.-+-+.++.+++..|.+-+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 33444443444444444555555667777777777777777776666677777777775444
No 207
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=37.67 E-value=81 Score=24.94 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=32.5
Q ss_pred hhhHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 408 LKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNS 453 (561)
Q Consensus 408 L~~l~~e~s~~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~r~~ 453 (561)
|+.+..-+.-|.+ +..+|+....-+..-++.+++-+..|.++++.
T Consensus 17 L~eI~~~l~l~~~-~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 17 LEEIRELLELYDQ-GDPPCADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHHCCS-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333 66799999988889999999999888877764
No 208
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.57 E-value=6e+02 Score=30.39 Aligned_cols=180 Identities=21% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHhHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhhccCC
Q 008574 130 DKKKKEFEEKLMLSENLVKDL-QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE--QREAVGEYQS 206 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikEL-QsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~--~e~~~~e~qs 206 (561)
+|+..|-++|+-..+++++++ +..+..+..|--+..........|...|+++++....++..+.... .-...+|+.+
T Consensus 194 Ekeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~ 273 (861)
T KOG1899|consen 194 EKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKS 273 (861)
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchh
Q ss_pred hhhHHHHHHHHh--------------------------------------hhhcccc------------------ccccc
Q 008574 207 PKFKDVQKLIAN--------------------------------------KLEHSIV------------------MTDAI 230 (561)
Q Consensus 207 ~~~KkIQklia~--------------------------------------kLE~S~~------------------~~~a~ 230 (561)
..-..+.+.+.. .++++.. ++..+
T Consensus 274 ~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~~~s~~e~~p~s~~S~~n~~~gp~~~~~~s~ 353 (861)
T KOG1899|consen 274 LRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSDSMSHSESFPVSSSSTTNNGKGPRSTVQSSS 353 (861)
T ss_pred hHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCcccccccccccccccccccccCCccccccCCC
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCCCCC-------CCCCCCCCCCCCCCCccccCCCCCCChhhhhhh-hhhcccccCC
Q 008574 231 SETSINTPPSEPKIPIRNAAGVERKPQAY-------PSMPAPLPPPPPPRPPARAAATQKTPSFAQLYH-SLTKQVEKKD 302 (561)
Q Consensus 231 ~~~~~~~~p~Ppp~p~p~~~~~~~k~~~~-------p~~PpPpPPPpPp~p~~g~~~~~rsP~~veLy~-sLk~K~e~~~ 302 (561)
+...+-+.-+|++.-..-.+..-+...+. .+.-.-|=+|.||.++ +-+|.+.++-+ ++-++.-+-.
T Consensus 354 ~p~~ssp~v~P~~~~~S~slg~lr~e~~dg~~~~v~~~~~~qpf~~lpp~~~------~d~pfl~e~kr~~~~g~~~~~~ 427 (861)
T KOG1899|consen 354 SPNMSSPAVSPQHNWSSASLGTLRQEHPDGGNQRVNNITSAQPFSPLPPAAR------QDAPFLDELKRNGNEGANHNYS 427 (861)
T ss_pred CCcCCCCCCCCccccccccccchhhhcCCcccccccccccCCcCCCCCCCcc------ccchhhhhccccCCcccccccC
Q ss_pred CCCCCCCCCCccc
Q 008574 303 LPSPVNQKRPAVS 315 (561)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (561)
..+..++...+..
T Consensus 428 sn~~~a~ap~~~~ 440 (861)
T KOG1899|consen 428 SNSLPAGAPKASS 440 (861)
T ss_pred cCcCcccCCCccc
No 209
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=37.56 E-value=1.9e+02 Score=27.10 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 135 EFEEKLMLSENLV-KDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 135 ELeeKLdlnEnli-kELQsELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
+++|-.++..+-. =-.+.|++.|+..+..|..+|..||+||.-|+
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544221 12345666666666666666666666666443
No 210
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.43 E-value=2.3e+02 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 145 nlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+.+|..++..|+..+..|..+.+..+.|+.+|.++=..+..=|..|-
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999998888877666666665543
No 211
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.29 E-value=1.4e+02 Score=35.40 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
++.|+.+++..|++|+.....|.....+-+..+..|
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444433333333333
No 212
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=37.18 E-value=73 Score=30.68 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=4.1
Q ss_pred HHHHHHhhh
Q 008574 334 AIKADIETK 342 (561)
Q Consensus 334 aIk~DVe~~ 342 (561)
++-.|+++.
T Consensus 65 r~~~D~~KR 73 (157)
T PF07304_consen 65 RVVDDIEKR 73 (157)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333455543
No 213
>PF12312 NeA_P2: Nepovirus subgroup A polyprotein ; InterPro: IPR021081 Proteins in this entry are typically between 259 and 1110 amino acids in length. They are found in association with PF03688 from PFAM, PF03689 from PFAM and PF03391 from PFAM. This entry includes RNA2 polyprotein (Protein 2A) which is implicated in RNA2 replication.
Probab=36.78 E-value=20 Score=36.45 Aligned_cols=6 Identities=67% Similarity=1.575 Sum_probs=2.2
Q ss_pred CCCCCC
Q 008574 264 APLPPP 269 (561)
Q Consensus 264 pPpPPP 269 (561)
||||||
T Consensus 203 ppPPpP 208 (258)
T PF12312_consen 203 PPPPPP 208 (258)
T ss_pred CCCCCC
Confidence 333333
No 214
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.69 E-value=2.5e+02 Score=33.08 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=9.8
Q ss_pred CccccccccccCC-CCCcccc
Q 008574 20 TTTFRLRANSKTR-ESPKQEA 39 (561)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~~~~ 39 (561)
-+-.+.+++-.|+ -+|++-.
T Consensus 302 ~~V~KiAasf~A~ly~P~~dL 322 (652)
T COG2433 302 ETVKKIAASFNAVLYTPDRDL 322 (652)
T ss_pred HHHHHHHHHcCCcccCCcccC
Confidence 3334566666654 4444433
No 215
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=36.54 E-value=2.2e+02 Score=28.70 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
..+..+..+++....+.+.++..+..|..++......+.+|....
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 335555566666666667777777777777777777776666543
No 216
>PRK02119 hypothetical protein; Provisional
Probab=36.54 E-value=2.7e+02 Score=23.71 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.3
Q ss_pred HHHHHHHhHhH
Q 008574 134 KEFEEKLMLSE 144 (561)
Q Consensus 134 ~ELeeKLdlnE 144 (561)
.+|+.++.-.+
T Consensus 12 ~~LE~rla~QE 22 (73)
T PRK02119 12 AELEMKIAFQE 22 (73)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.50 E-value=1.9e+02 Score=30.91 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=34.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQ-------SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQ-------sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..-.|+++|+....-..-+|- =+++.|+++++.+.....++.+++.+...++...+..+..|.
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666644433333333 446666777776666666666665555555555544444444
No 218
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=36.29 E-value=4.1e+02 Score=25.74 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=40.7
Q ss_pred hhhhhHHHHhhcCCchhhHH-HHHHHHhhh---hhhhhHHHhhhcc---cCCCCCchHHHHHHHHHHHHH-HHHHHHHHH
Q 008574 377 SLADERAVLKHFKWPEKKAD-AMREAAVEY---RDLKQLENEISSY---RDDTNVPFGAALKKMASLLDK-SERSIQRLV 448 (561)
Q Consensus 377 ~L~DEraVL~~F~wPe~K~d-alReAa~~Y---~~L~~l~~e~s~~---~d~p~~p~~~al~km~~lldk-~E~~~~~l~ 448 (561)
...|+.||-+--.+-..+.+ ++|.| ..- ..|-+|.++|+.| +|=+ .+..+++.-.+.++- .|..=..|.
T Consensus 47 kv~~~~q~~k~tq~~q~a~eM~vRAa-~mVrA~dsLlKLvsdLKqflIl~dFh--sln~~I~q~~aq~~~t~~e~~r~l~ 123 (148)
T KOG3304|consen 47 KVEDETQVSKATQGEQDAYEMHVRAA-NMVRAGDSLLKLVSDLKQFLILNDFH--SLNEAIDQRNAQFRQTQEECDRKLI 123 (148)
T ss_pred hcCChhhhccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665544444433 23322 222 3488889999887 3433 334444433333333 333334567
Q ss_pred Hhhhhhhhc
Q 008574 449 KLRNSVMHS 457 (561)
Q Consensus 449 r~r~~~~~r 457 (561)
++||+++..
T Consensus 124 ~l~de~s~~ 132 (148)
T KOG3304|consen 124 TLRDEVSID 132 (148)
T ss_pred HHHHHHHHH
Confidence 777776643
No 219
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=36.12 E-value=18 Score=40.58 Aligned_cols=16 Identities=0% Similarity=-0.220 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008574 478 KQASMKLAQMYMKRVT 493 (561)
Q Consensus 478 K~asv~la~~ymkrv~ 493 (561)
.-++|+++..||+-..
T Consensus 358 ~~~~v~~~~~~~~F~a 373 (461)
T PLN03132 358 STDVVDAIARLSYFYK 373 (461)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4467888888887333
No 220
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.98 E-value=3.1e+02 Score=27.64 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=27.5
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAE--FVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkE--lEkL~~~NeELEkENqeL~qQL 182 (561)
+-++..|++|++.....+...+.||..|..- .++++....+|.+|..+.+..+
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655555555555544432 2334455555555554444443
No 221
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.92 E-value=1.5e+02 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENq 176 (561)
+.+.+.+++.|.+.+....+++++-.+
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 222
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.89 E-value=2.4e+02 Score=23.91 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 145 nlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..+..|++.++.+...+......+..|-.|.-....++.-+..++..|+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666664
No 223
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.54 E-value=2e+02 Score=26.84 Aligned_cols=50 Identities=26% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsq 184 (561)
++=.+++.-+..+-.|-.|+..+++-+..+...|.-|.-||..|+..+..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34444555555555555666666666666666666666666666655543
No 224
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.33 E-value=1.1e+02 Score=24.94 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
.+..++.++..++.+.++++.++.+|+.++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555444444443
No 225
>PRK15313 autotransport protein MisL; Provisional
Probab=35.31 E-value=48 Score=40.33 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=4.1
Q ss_pred hhcccccCC
Q 008574 455 MHSYKDCKI 463 (561)
Q Consensus 455 ~~ryk~~~I 463 (561)
...|+.+|+
T Consensus 794 ~~~Y~s~G~ 802 (955)
T PRK15313 794 AEKYKSKGI 802 (955)
T ss_pred ccceeeeEE
Confidence 344554443
No 226
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.30 E-value=1.3e+02 Score=37.34 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=31.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ--------SLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~--------~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+..+++.++-..++.+++++.++..+.+.+..+. .+..+.+.+...|..++..++.++.+|..
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666554444333333222 22333444444444555555554444443
No 227
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.27 E-value=2.3e+02 Score=27.97 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
+..|.+.+...+.+|+.++..|+.++..+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333333333333333333333
No 228
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.12 E-value=3.5e+02 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++|+..+..-......+...++.-+..++..|.+++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444444444444433
No 229
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=34.77 E-value=5.7e+02 Score=26.96 Aligned_cols=12 Identities=42% Similarity=0.385 Sum_probs=6.7
Q ss_pred CCCcCCccCCCC
Q 008574 78 PKSAEGAVGSHK 89 (561)
Q Consensus 78 ~k~~~~~~gs~~ 89 (561)
=++..++=||.+
T Consensus 51 ~~S~n~hDgs~D 62 (265)
T PF06409_consen 51 FKSRNGHDGSTD 62 (265)
T ss_pred hhccCCCccchH
Confidence 455555556653
No 230
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=34.71 E-value=1.1e+02 Score=27.17 Aligned_cols=61 Identities=34% Similarity=0.352 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHhHHHHhhhhhhhHHHHhhc----CCchhh---HHHHHHHHhhhhhhhhHHHhhhcccCCCC
Q 008574 359 TNIEDLLEFVDWLDKELSSLADERAVLKHF----KWPEKK---ADAMREAAVEYRDLKQLENEISSYRDDTN 423 (561)
Q Consensus 359 ~di~~v~~fv~wld~~L~~L~DEraVL~~F----~wPe~K---~dalReAa~~Y~~L~~l~~e~s~~~d~p~ 423 (561)
..++++...++++|.+|=.|..||.=|.++ .|-.++ .|.-||++. |.++..+......+|.
T Consensus 8 ~~L~~lR~~Id~iD~~ll~Ll~eR~~l~~~Va~~K~~~g~~pi~d~~RE~~v----l~~~~~~~~~~~l~~~ 75 (101)
T COG1605 8 EELEELREEIDEIDRELLDLLAERLELAKEVGEAKAASGKLPIYDPEREEQV----LERLRAEAEKGGLDPE 75 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHH----HHHHHHHHHhCCCCHH
Confidence 467888888999999999999999988877 788887 888999988 7777777777777773
No 231
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.61 E-value=3.5e+02 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=7.9
Q ss_pred HHHHHHHhHhHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDL 150 (561)
Q Consensus 134 ~ELeeKLdlnEnlikEL 150 (561)
.+|..++...+..+.+|
T Consensus 257 ~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 257 QNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554444444443
No 232
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=34.55 E-value=4.1e+02 Score=25.56 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=7.4
Q ss_pred cccccchHhHHHHHH
Q 008574 124 IEDGLMDKKKKEFEE 138 (561)
Q Consensus 124 Ved~~~~Kkk~ELee 138 (561)
||+-+ ..+.+|++
T Consensus 8 iE~LI--nrInelQQ 20 (134)
T PF15233_consen 8 IEDLI--NRINELQQ 20 (134)
T ss_pred HHHHH--HHHHHHHH
Confidence 44555 55666665
No 233
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.37 E-value=3.8e+02 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 160 ElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
++..+.....+++.+...|+.++..+...+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444
No 234
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=34.30 E-value=6.4e+02 Score=29.45 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=13.4
Q ss_pred hhhhhccCCh----hhHHHHHHHHhh
Q 008574 198 REAVGEYQSP----KFKDVQKLIANK 219 (561)
Q Consensus 198 e~~~~e~qs~----~~KkIQklia~k 219 (561)
++++|.+-|. .+-.+.++|.+|
T Consensus 208 eKenIsYlSsgLhHv~tElKeii~nK 233 (574)
T PF07462_consen 208 EKENISYLSSGLHHVFTELKEIIKNK 233 (574)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 6667776665 344555666664
No 235
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.15 E-value=1.4e+02 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008574 168 NAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 168 NeELEkENqeL~qQLsqA 185 (561)
...|+.+|..|.+++..+
T Consensus 34 ~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 34 VQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 236
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=33.88 E-value=46 Score=36.53 Aligned_cols=16 Identities=0% Similarity=0.000 Sum_probs=11.2
Q ss_pred CChhhhhhhhhhcccc
Q 008574 284 TPSFAQLYHSLTKQVE 299 (561)
Q Consensus 284 sP~~veLy~sLk~K~e 299 (561)
---+.++..++|=|+.
T Consensus 32 ~ALL~DI~KG~KLKK~ 47 (437)
T KOG4462|consen 32 NALLGDIQKGKKLKKA 47 (437)
T ss_pred HHHHHHhhhcceecce
Confidence 3456888888887664
No 237
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.85 E-value=2.2e+02 Score=23.76 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+|+..+.-...-++.|.....+..++...|+.++..+..++
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333333333333333333344444333
No 238
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=33.84 E-value=5.7e+02 Score=30.40 Aligned_cols=142 Identities=19% Similarity=0.219 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhccccC-------HHHHHHHHHhHHHHhhhhhhhHHHHhhcCCchhhHH-----HHH
Q 008574 332 LLAIKADIETKGGFINSLIQKVLAAAYTN-------IEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKAD-----AMR 399 (561)
Q Consensus 332 l~aIk~DVe~~~~~I~~L~~~i~~~~~~d-------i~~v~~fv~wld~~L~~L~DEraVL~~F~wPe~K~d-----alR 399 (561)
|+++++-++=-...+.+|--+|..|+.-+ .++|..=+..|+..-.+|..|-..|++- -=++||. +.+
T Consensus 201 ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~E-LiedRW~~vFr~l~~ 279 (683)
T PF08580_consen 201 LLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKE-LIEDRWNIVFRNLGR 279 (683)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHH
Confidence 44555555544444466666666655433 2344444455556666677777777765 2255554 589
Q ss_pred HHHhhhhhhhhHHHhhhcccCC-CCC-chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcccccchhhHHHH
Q 008574 400 EAAVEYRDLKQLENEISSYRDD-TNV-PFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKI 477 (561)
Q Consensus 400 eAa~~Y~~L~~l~~e~s~~~d~-p~~-p~~~al~km~~lldk~E~~~~~l~r~r~~~~~ryk~~~Ip~~wmlD~gii~ki 477 (561)
+|...|..|..+...++.-.+. ... --+..-++|.+.-.|+-+|+..+-+-|... ++|.||..+.
T Consensus 280 q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~s-------------Ii~~gv~~r~ 346 (683)
T PF08580_consen 280 QAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLS-------------IIDKGVADRL 346 (683)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHH-------------hhhhhHHHHh
Confidence 9999999888887776655321 000 113566788888889999987775544433 3567754443
Q ss_pred HHHHHHHHHHHHH
Q 008574 478 KQASMKLAQMYMK 490 (561)
Q Consensus 478 K~asv~la~~ymk 490 (561)
= -+|+.+++.
T Consensus 347 n---~~L~~rW~~ 356 (683)
T PF08580_consen 347 N---ADLAQRWLE 356 (683)
T ss_pred h---HHHHHHHHH
Confidence 2 467777765
No 239
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.76 E-value=2.5e+02 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008574 434 ASLLDKSERSIQRLVKLR 451 (561)
Q Consensus 434 ~~lldk~E~~~~~l~r~r 451 (561)
-.+||+.|.-+..|.+.|
T Consensus 986 m~mle~~E~~~~~lk~k~ 1003 (1174)
T KOG0933|consen 986 MDMLERAEEKEAALKTKK 1003 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666655554443
No 240
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.68 E-value=2.9e+02 Score=28.08 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
+|+..+..+..+...++.++..+|+|++-|..++..+..+-..
T Consensus 71 dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 71 DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444555555555555555555555555555444433
No 241
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.53 E-value=5.2e+02 Score=27.79 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=23.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL 164 (561)
..+.++.+.|......+.+|+.++..++.++..+
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777766543
No 242
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.52 E-value=1.8e+02 Score=28.79 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=27.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.....|+++++.....+.+|+.++.........-.. ...+-.+...|..++..+..++..+.
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~e-R~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEE-REELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544322222111 11222334445555555555554333
No 243
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.45 E-value=2.5e+02 Score=31.96 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=5.1
Q ss_pred hhhhhHHHH
Q 008574 317 AHSSIVGEI 325 (561)
Q Consensus 317 a~~~~i~Ei 325 (561)
||..+||++
T Consensus 249 aMTALIGRV 257 (472)
T TIGR03752 249 AMTALIGRV 257 (472)
T ss_pred HHHHHhccc
Confidence 455666654
No 244
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.27 E-value=2.8e+02 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=10.2
Q ss_pred HhHHHHHHHHhHhHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQS 152 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQs 152 (561)
....+|+.++.-.+..+.+|-.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433
No 245
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.23 E-value=1.9e+02 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
.+|++++..+...+..++.+|+++..+..++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444444433
No 246
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.16 E-value=3.6e+02 Score=29.09 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh----hhhhhhccCChhhHHHHHHH
Q 008574 174 QNKKLVEDLVAAEAKIASLSSRE----QREAVGEYQSPKFKDVQKLI 216 (561)
Q Consensus 174 ENqeL~qQLsqAeaQIssL~s~~----~e~~~~e~qs~~~KkIQkli 216 (561)
++...+.++.++-+||..++.+. .+.+....+....|++|..+
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444555566666665554433 23344444445556666643
No 247
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.06 E-value=3.3e+02 Score=31.04 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008574 171 LEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 171 LEkENqeL~qQLsqAeaQI 189 (561)
+|+..++++..+.....++
T Consensus 380 ~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 248
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.06 E-value=2.9e+02 Score=33.89 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=28.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.......+..+++++..+.-++.+.+..+++...|.++|++++.++.+.=.++
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ 405 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQL 405 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666666555555555555556665555554444333
No 249
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.69 E-value=4.6e+02 Score=28.92 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 153 EVFALKAEFVKAQSL 167 (561)
Q Consensus 153 ELeaLkkElEkL~~~ 167 (561)
.+..+..++..+..+
T Consensus 318 ~l~~~~~~~~~l~~~ 332 (498)
T TIGR03007 318 ELAEAEAEIASLEAR 332 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 250
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.41 E-value=2.4e+02 Score=23.45 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 151 QsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+.++......++.++.+...+|.-...+..++..++.++..+++
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555556666655554
No 251
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.32 E-value=1.1e+02 Score=32.51 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=40.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
....++++.+...+....+.+.++..+..++..+....++...+...|+.++......+.
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555566666666666666666777777777777777777777777777776666665553
No 252
>PHA01750 hypothetical protein
Probab=32.19 E-value=1.5e+02 Score=25.49 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 151 QsELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
+.|++.|+.|++.+....+.++++..++...+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 46677777777766666666665555444433
No 253
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.92 E-value=3e+02 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 169 AELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 169 eELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++.++|.+|..++..+..++..+.
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554333
No 254
>PRK15244 virulence protein SpvB; Provisional
Probab=31.73 E-value=25 Score=40.58 Aligned_cols=16 Identities=44% Similarity=0.920 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 008574 254 RKPQAYPSMPAPLPPP 269 (561)
Q Consensus 254 ~k~~~~p~~PpPpPPP 269 (561)
+..|.-+++|||||||
T Consensus 358 ~~~~~~~~~~~~~~~~ 373 (591)
T PRK15244 358 RRAPVNNMMPPPPPPP 373 (591)
T ss_pred ccccCCCCCCCcccCc
No 255
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=31.68 E-value=1.4e+02 Score=30.20 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=38.2
Q ss_pred hHhHHHHHHHHhHhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVK-------------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlik-------------ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.+.+..|.+.|-+....+. +|+.+++.|+...+.+...+..|+.|+++|..++..+..++
T Consensus 77 p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 77 PERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred hHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4456667776666555544 44455667777777777777777777777666666555544
No 256
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.68 E-value=3.3e+02 Score=23.23 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+.+.++.....++.++.++..+..|...+....+++-...+.-.+.+...-..+.++.
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666777777777788888888888777766666655555555555555555554444
No 257
>PRK14127 cell division protein GpsB; Provisional
Probab=31.47 E-value=1.3e+02 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 165 QSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 165 ~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
...+.+|+.++..|+.++..+..++.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444444
No 258
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.23 E-value=2e+02 Score=31.01 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=7.4
Q ss_pred hhHHHHHHHHh
Q 008574 208 KFKDVQKLIAN 218 (561)
Q Consensus 208 ~~KkIQklia~ 218 (561)
++|+||.+-.+
T Consensus 82 LlKkl~~l~ke 92 (310)
T PF09755_consen 82 LLKKLQQLKKE 92 (310)
T ss_pred HHHHHHHHHHH
Confidence 67777776544
No 259
>PRK12704 phosphodiesterase; Provisional
Probab=31.21 E-value=5e+02 Score=29.75 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=11.2
Q ss_pred chHHhHHHHHHHHhccccc
Q 008574 530 DSETLCAFEEIRQRVPQHL 548 (561)
Q Consensus 530 D~~t~~afeElr~~~~~~~ 548 (561)
|.++..+..+|.+.+...+
T Consensus 481 d~~~~~la~~i~~~ie~~~ 499 (520)
T PRK12704 481 DLQAVRLARDIAKKIEEEL 499 (520)
T ss_pred hHHHHHHHHHHHHHHHHhC
Confidence 4446666677766665444
No 260
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.03 E-value=5.5e+02 Score=27.38 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQ 174 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkE 174 (561)
++|+..-.+|..|+++|..+.+.+++|
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555454444443
No 261
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.02 E-value=84 Score=36.47 Aligned_cols=11 Identities=18% Similarity=-0.058 Sum_probs=5.6
Q ss_pred HHHHHHHhHhH
Q 008574 134 KEFEEKLMLSE 144 (561)
Q Consensus 134 ~ELeeKLdlnE 144 (561)
.+|++.++.-.
T Consensus 439 ~~l~~~w~~~~ 449 (620)
T PRK14948 439 LNLEELWQQIL 449 (620)
T ss_pred cCHHHHHHHHH
Confidence 35555554443
No 262
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.93 E-value=2.8e+02 Score=30.10 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=43.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE----------------------------LEKQNKKLVEDL 182 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE----------------------------LEkENqeL~qQL 182 (561)
.++++|-..|+.....+.+|+.++.++..|++.+...-+. |--||.+|++++
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 4567787888777777888888888888777776655332 334566666666
Q ss_pred HHHHHHHhhhhh
Q 008574 183 VAAEAKIASLSS 194 (561)
Q Consensus 183 sqAeaQIssL~s 194 (561)
.++..+...+.+
T Consensus 206 ~q~qeE~~l~k~ 217 (319)
T PF09789_consen 206 KQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
No 263
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.90 E-value=3.1e+02 Score=32.65 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHHHHh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQklia~ 218 (561)
+.+++.-+..++.++++......+++.+...+++.-..+...+. .+.++|..+.+++++++..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e---------~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE---------EAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444455555544444433333333332 3444566677777766543
No 264
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=30.78 E-value=2e+02 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 161 lEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.++|...+.+|..|...|..+++.+..++..++.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666655554
No 265
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=30.57 E-value=1.9e+02 Score=33.92 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 155 FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 155 eaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.-|+.|++..++...+||..+.+|++++..++++....
T Consensus 339 ~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 339 DVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556667777777777777777666544
No 266
>PRK11020 hypothetical protein; Provisional
Probab=30.52 E-value=1.7e+02 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 008574 177 KLVEDLVAAEAKIASLSSREQ 197 (561)
Q Consensus 177 eL~qQLsqAeaQIssL~s~~~ 197 (561)
++..++..+..+|.++++...
T Consensus 35 qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 35 QFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655433
No 267
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=30.26 E-value=3.3e+02 Score=27.02 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
.++-.+|+....-..+|..-...|+..++.....|+.|..++..|.+++..+..++..
T Consensus 63 e~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 63 EEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555556655556788888888888888888888888888887777643
No 268
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.11 E-value=2.4e+02 Score=35.55 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 145 nlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
...++++.++..++.....+..+...++.+.+.+...+..++.+|.++++..
T Consensus 799 ~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~ 850 (1293)
T KOG0996|consen 799 EQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV 850 (1293)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555566666666666677777777777777777777777777653
No 269
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=30.00 E-value=3.8e+02 Score=32.06 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=11.5
Q ss_pred CCCchHHhHHHHHHHHh
Q 008574 527 GGLDSETLCAFEEIRQR 543 (561)
Q Consensus 527 GG~D~~t~~afeElr~~ 543 (561)
.|+|....+.|.++-..
T Consensus 1122 ~~ld~~~~~~~~~~~~~ 1138 (1179)
T TIGR02168 1122 APLDDANVERFANLLKE 1138 (1179)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 68898877766665433
No 270
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.87 E-value=1.3e+02 Score=30.78 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008574 161 FVKAQSLNAELEKQNKKLVED 181 (561)
Q Consensus 161 lEkL~~~NeELEkENqeL~qQ 181 (561)
...+.++|.+|++|+.+|+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 71 LFDLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 271
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.61 E-value=3.8e+02 Score=28.82 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+|..-+..-...+++|..++..+..+-+.+-....++-.+.+.|..+.+....+|..++.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456666666666666666566666666666666666666666666665
No 272
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.41 E-value=4.2e+02 Score=23.76 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVK-AQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 152 sELeaLkkElEk-L~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..+.+|++..+. +....++|+.++..+..++.+++.++
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555544433 55556666666666666666666665
No 273
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.37 E-value=4.6e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=16.1
Q ss_pred cCCCCCCChhhhhhhhhhcccccCC
Q 008574 278 AAATQKTPSFAQLYHSLTKQVEKKD 302 (561)
Q Consensus 278 ~~~~~rsP~~veLy~sLk~K~e~~~ 302 (561)
....+.++.+-++...+..-..+.+
T Consensus 132 ~~~t~~~~~~~~l~~~~~~~~~~~~ 156 (359)
T COG1463 132 LERTQVPIDLEDLLGDLLLLLGGLD 156 (359)
T ss_pred ccCCcCcccHHHHHHHHHHHhccCC
Confidence 3456666777778877777554433
No 274
>TIGR03582 EF_0829 PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown.
Probab=29.30 E-value=4.6e+02 Score=24.17 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=40.8
Q ss_pred hhhhhhhcccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhHHHHHhhhhh
Q 008574 450 LRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHF 518 (561)
Q Consensus 450 ~r~~~~~ryk~~~Ip~~wmlD~gii~kiK~asv~la~~ymkrv~~El~~~~~~~~~~~~~~lL~qgvrF 518 (561)
++.+.++.+.+-.||- +|.-|.-.|+..|++||..-+...- .-+..|..|| +|||
T Consensus 47 laaml~Rs~~GE~lp~---vD~~Lf~EIs~~sl~la~~v~~~f~----------~L~~~E~~ll-svhf 101 (107)
T TIGR03582 47 LNAMVYRSTTGETLPE---VDRSLFDEISKESIKLAEEVVAALG----------NLAEDEAYLL-SVHF 101 (107)
T ss_pred HHHHHHHHHcCCcCCc---cCHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHH-HHhh
Confidence 4677778888889985 7999999999999999966554421 2333555666 7888
No 275
>PRK04406 hypothetical protein; Provisional
Probab=29.28 E-value=3.7e+02 Score=23.08 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhh
Q 008574 179 VEDLVAAEAKIASL 192 (561)
Q Consensus 179 ~qQLsqAeaQIssL 192 (561)
++++..+..++..|
T Consensus 38 q~~I~~L~~ql~~L 51 (75)
T PRK04406 38 QLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 276
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.25 E-value=1.8e+02 Score=26.42 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
|+.+|.=...|.+-+..-..+++.+|..|.+++.+.+....
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333344444555556666677777776666665553
No 277
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.97 E-value=5.9e+02 Score=27.91 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=8.1
Q ss_pred ccccCccccccccchhhhh
Q 008574 53 RAKSVPADVKTNNISKSRR 71 (561)
Q Consensus 53 ra~s~~~~~k~~~~~~~~r 71 (561)
|.--+|+|+- ++|.+.
T Consensus 81 r~~g~~~df~---p~kLk~ 96 (359)
T PF10498_consen 81 RKLGVPVDFP---PSKLKQ 96 (359)
T ss_pred HccCCCCCCC---hHHhhC
Confidence 4444666654 444444
No 278
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=28.89 E-value=62 Score=31.55 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=25.9
Q ss_pred hhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 008574 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA 355 (561)
Q Consensus 318 ~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~ 355 (561)
.+.+=.||.+|++||..||..+ ..|..|-++|+.
T Consensus 105 LSrIPdei~dR~~FL~tIK~IA----saIK~lLdAvn~ 138 (154)
T PF06840_consen 105 LSRIPDEISDRRTFLETIKEIA----SAIKKLLDAVNE 138 (154)
T ss_dssp HHTHHHHTTSHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhcCcHhhcchHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4678899999999999999654 445666666664
No 279
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.43 E-value=5.9e+02 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=18.0
Q ss_pred cchhhHHHHHHHHhhhhhhHHHHHHHHH
Q 008574 327 NRSAHLLAIKADIETKGGFINSLIQKVL 354 (561)
Q Consensus 327 nRSa~l~aIk~DVe~~~~~I~~L~~~i~ 354 (561)
.---|..-|++-|++....|..-+.+..
T Consensus 270 dgrihp~riee~~~~~~~~~~~~i~~~g 297 (514)
T TIGR03319 270 DGRIHPARIEEMVEKATKEVDNAIREEG 297 (514)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666777777777766666665543
No 280
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.40 E-value=5.7e+02 Score=28.53 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.++.-|.+.|+.|++....+..-+..|+.-|+.-|..+++..
T Consensus 248 ~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~h 289 (561)
T KOG1103|consen 248 EEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADH 289 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333333444444444433333333334444444443333333
No 281
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=28.35 E-value=28 Score=39.12 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=4.8
Q ss_pred HHHHhcchhhH
Q 008574 322 VGEIQNRSAHL 332 (561)
Q Consensus 322 i~Ei~nRSa~l 332 (561)
|.+-..+.-|.
T Consensus 51 l~~y~~~ggy~ 61 (461)
T PLN03132 51 LKGAMKRGDWH 61 (461)
T ss_pred HHHHHHcCCHH
Confidence 44444444444
No 282
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.32 E-value=2.2e+02 Score=27.56 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSL 167 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~ 167 (561)
.....+|+.++.+.+.|+..++..
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~ 83 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTA 83 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334467777888888888877644
No 283
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.31 E-value=4.2e+02 Score=31.05 Aligned_cols=11 Identities=0% Similarity=-0.173 Sum_probs=7.3
Q ss_pred hhhhhhhhhhc
Q 008574 286 SFAQLYHSLTK 296 (561)
Q Consensus 286 ~~veLy~sLk~ 296 (561)
.+.|-||+|+.
T Consensus 525 ~~~Ea~r~lr~ 535 (754)
T TIGR01005 525 VAEEELRVKEE 535 (754)
T ss_pred cchHHHHHHHH
Confidence 45777777754
No 284
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.31 E-value=5.3e+02 Score=29.88 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+..+.++++.+.....+++.+...+.+++..++.++..++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666665554
No 285
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=28.24 E-value=1.2e+02 Score=25.89 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccCCCccccc
Q 008574 433 MASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWML 469 (561)
Q Consensus 433 m~~lldk~E~~~~~l~r~r~~~~~ryk~~~Ip~~wml 469 (561)
+.++.+-|.+++..|+.||-.....--+||+| +|.+
T Consensus 3 ~~~~~~~I~q~l~~lL~Tr~g~~~~~~~yGl~-d~~~ 38 (99)
T PF04965_consen 3 RVSLRESIRQSLEMLLNTRPGERPSRPDYGLP-DLIF 38 (99)
T ss_dssp ---HHHHHHHHHHHHHT--TTSSTT-TT-SGG-G---
T ss_pred chhHHHHHHHHHHHHHCCCCCccccCcccCCh-hHcC
Confidence 45788999999999999999999988899976 6554
No 286
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.15 E-value=5.1e+02 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=11.0
Q ss_pred hhHHHHhcchhhHHHHHHHHh
Q 008574 320 SIVGEIQNRSAHLLAIKADIE 340 (561)
Q Consensus 320 ~~i~Ei~nRSa~l~aIk~DVe 340 (561)
....|.+.|=.++..=.+|++
T Consensus 970 ee~e~~~~r~~~l~~~~~dl~ 990 (1163)
T COG1196 970 EEYEEVEERYEELKSQREDLE 990 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655334443
No 287
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.06 E-value=83 Score=36.34 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQ---SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSP 207 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQ---sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~ 207 (561)
+....-+.++.--+.+++.=+ .=+..|...+.++.+.|+.|.+||.-|+.++..+..+-..++ ....--.
T Consensus 278 kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k-------vpsp~~~ 350 (655)
T KOG4343|consen 278 KVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK-------VPSPKGR 350 (655)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc-------cCCCccc
Confidence 554444444444443332211 113344444555555555555555555555544444322221 1111222
Q ss_pred hhHHHHHHHHhh
Q 008574 208 KFKDVQKLIANK 219 (561)
Q Consensus 208 ~~KkIQklia~k 219 (561)
+.|++.+..+.+
T Consensus 351 ~qKk~Rkvvaim 362 (655)
T KOG4343|consen 351 NQKKKRKVVAIM 362 (655)
T ss_pred ccccchhhhhHH
Confidence 456777777764
No 288
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=28.00 E-value=4.8e+02 Score=24.03 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+..|..-+..-+-.+..++.-+.+...|.+.+...+.+.+.+....+.++..++.++...+
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777776777777777788888888888888888888888888888887775444
No 289
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.96 E-value=3.6e+02 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLs 183 (561)
..+.....+|.+|+.+...|+.++.
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 290
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.86 E-value=2.3e+02 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
.++..+.+++..+...+.+++..++++.+++..+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444444333333333333
No 291
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.74 E-value=3.4e+02 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+|+..+.-...-++.|.+...+.+++...|+.++..+..++.++.
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444333444444444444455555555554444
No 292
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=27.70 E-value=1.6e+02 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=13.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFA 156 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELea 156 (561)
.++++|...|...|.+|+-|+.=|.+
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~a 54 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAA 54 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666555555555555444333
No 293
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.32 E-value=4e+02 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+|+.||..+..+.+. .+.++...+.|++....++.++..+.
T Consensus 123 ~eL~~eI~~L~~~i~~----le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQR----LEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444443 33344444455555555555554433
No 294
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=27.22 E-value=3.6e+02 Score=23.64 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
++|+.+|.....|+++|......|+........--..++.+...++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888887777777766655554444555544443
No 295
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=27.19 E-value=2.3e+02 Score=35.38 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=44.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
++...|+++|......+..++..+.+...+.+.+.....+++.++..|++++.+++++...-
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55567777776666666667777777777777777777778888888888877776666443
No 296
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.09 E-value=1.4e+02 Score=33.68 Aligned_cols=36 Identities=31% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
.|++.+..|-+++.++..+++++...+..++...+.
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544444443333
No 297
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.03 E-value=3.7e+02 Score=29.71 Aligned_cols=60 Identities=30% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL------NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~------NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+|.+++..-...+++++.++..+++.+..+... ..+.....+.+...+..+..++..|.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 395 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELK 395 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444432 12222333444444444444444444
No 298
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=1.3e+02 Score=36.48 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
-++...+.+..|+..+..+.-+++.+.+.+.+|+.|+.+|..++.....+.++|+.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~ 706 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD 706 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666777777777777778888888888888888888777777766664
No 299
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.71 E-value=5.1e+02 Score=29.49 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=36.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHH
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSL-------NAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~-------NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~Kk 211 (561)
.|.........|+..+..|+.|++..... ..........|..++...+.++...... +....+..+.++..
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~--e~~~k~~~~~l~~~ 373 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAE--EEKAKEAMSELPKA 373 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhh--hcchhhhHHHHHHH
Confidence 33333333334444444444444443333 3333334556666666666666544432 22233334456666
Q ss_pred HHHHHHh
Q 008574 212 VQKLIAN 218 (561)
Q Consensus 212 IQklia~ 218 (561)
||++-.+
T Consensus 374 Lqql~~E 380 (522)
T PF05701_consen 374 LQQLSSE 380 (522)
T ss_pred HHHHHHH
Confidence 6665444
No 300
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.65 E-value=3.2e+02 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
+..+..++..|...|..|+.++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 301
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.60 E-value=3.3e+02 Score=32.84 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLs 183 (561)
.....+|+++|+..+..+..|+..+....+.++.++.+..+.|.....|+.++.
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666776666666666666665555555555555555555444544444
No 302
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=26.57 E-value=4.6e+02 Score=32.19 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhHHHHHHHHHH--------------------------------------------HHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSE--------------------------------------------VFALKAEFVKAQSL 167 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsE--------------------------------------------LeaLkkElEkL~~~ 167 (561)
+++||...+...++.|++|+++ +..+...+..|+..
T Consensus 35 s~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~ 114 (1265)
T KOG0976|consen 35 SHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNK 114 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHHHHhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLE 221 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQklia~kLE 221 (561)
-.++|.|.+.|+.-...++.++ +.++-+.-+..+.+-+.+|.|-|.-.|
T Consensus 115 c~~lE~ekq~lQ~ti~~~q~d~-----ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 115 CLRLEMEKQKLQDTIQGAQDDK-----KENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHhhhhHH
No 303
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.55 E-value=3.3e+02 Score=33.67 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=23.1
Q ss_pred ccCHHHHHHHHHhHHHHh--hhhhhhHHHHhhc-CCchhhHHHHH
Q 008574 358 YTNIEDLLEFVDWLDKEL--SSLADERAVLKHF-KWPEKKADAMR 399 (561)
Q Consensus 358 ~~di~~v~~fv~wld~~L--~~L~DEraVL~~F-~wPe~K~dalR 399 (561)
...|+..+.|+.+|-+.+ +.|-||.+.++-. .+=+.=+|+++
T Consensus 730 ~e~i~k~l~yfq~m~s~hl~~qllde~q~~~d~iasl~A~ld~~~ 774 (1243)
T KOG0971|consen 730 VEPITKALKYFQHLYSIHLAEQLLDETQQLADHIASLQAALDCMS 774 (1243)
T ss_pred cchHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666665532 3466666665544 55555555544
No 304
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.49 E-value=1.7e+02 Score=24.40 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.7
Q ss_pred HHHHHHhhhhc
Q 008574 212 VQKLIANKLEH 222 (561)
Q Consensus 212 IQklia~kLE~ 222 (561)
|++++.++|-.
T Consensus 63 Ie~~Ar~~lgM 73 (85)
T TIGR02209 63 IEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHhcCC
Confidence 45555555444
No 305
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.49 E-value=7.2e+02 Score=25.56 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=31.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+.+.+|+.+|...+......+.+|.........|......++.+...|......+......|.
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888776666655555554444433333444444444444444444344444443333
No 306
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.20 E-value=5.2e+02 Score=29.19 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=46.1
Q ss_pred hhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHHHHHHhHHHHhhhhhhhHHHHhhc
Q 008574 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF 388 (561)
Q Consensus 319 ~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~~fv~wld~~L~~L~DEraVL~~F 388 (561)
-.--.|+.||-+-.++-...+.....-|.-+.-+|.+ .-.+|.+=..-..-+|.++++|--|-+-|..+
T Consensus 213 q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaa-r~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 213 QARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAA-RAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888887777777766677776666654 44555555556666777777776666655544
No 307
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.16 E-value=3.6e+02 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 008574 473 IISKIKQASMKLAQMY 488 (561)
Q Consensus 473 ii~kiK~asv~la~~y 488 (561)
+..+++.+-..++.-.
T Consensus 1348 l~r~lsk~~~e~~~~~ 1363 (1930)
T KOG0161|consen 1348 LERKLSKANAELAQWK 1363 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 308
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=26.09 E-value=56 Score=32.19 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred hcccccCCCcccccchhhHHHHHHHHHHHHH
Q 008574 456 HSYKDCKIPVDWMLDSGIISKIKQASMKLAQ 486 (561)
Q Consensus 456 ~ryk~~~Ip~~wmlD~gii~kiK~asv~la~ 486 (561)
--|+.+|+|..||.. -|..||.+++.+..
T Consensus 113 E~Y~aLgVP~~~~v~--al~~mK~~~~~~~~ 141 (170)
T TIGR01339 113 ETYLALGTPGSSVAA--GVQKMKDAALAIVN 141 (170)
T ss_pred HHHHHhCCCchHHHH--HHHHHHHHHHHHhc
Confidence 358899999999866 45566666666553
No 309
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.05 E-value=4.5e+02 Score=31.97 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.0
Q ss_pred hhHHHHHHHHh
Q 008574 208 KFKDVQKLIAN 218 (561)
Q Consensus 208 ~~KkIQklia~ 218 (561)
+.+.+|..++.
T Consensus 544 LtR~LQ~Sma~ 554 (861)
T PF15254_consen 544 LTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHH
Confidence 45555555555
No 310
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.04 E-value=3.1e+02 Score=26.56 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 008574 171 LEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 171 LEkENqeL~qQLsqAeaQIssL~ 193 (561)
++.|.++++.++..++.++..|+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 311
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=25.96 E-value=82 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=8.4
Q ss_pred hhHHHH--HHHHHHHHHHHH
Q 008574 472 GIISKI--KQASMKLAQMYM 489 (561)
Q Consensus 472 gii~ki--K~asv~la~~ym 489 (561)
|||.-+ =+|+|.....|+
T Consensus 383 GIiR~lLPGQAvVt~~Q~rL 402 (582)
T PF03276_consen 383 GIIRPLLPGQAVVTAMQQRL 402 (582)
T ss_pred hhhhccCChHHHHHHHHHHh
Confidence 554444 345555444443
No 312
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.95 E-value=2.9e+02 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHh
Q 008574 335 IKADIETKGGFINSLIQKVLA 355 (561)
Q Consensus 335 Ik~DVe~~~~~I~~L~~~i~~ 355 (561)
.+.++.....-|++++..++.
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~ 464 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGE 464 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666553
No 313
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.95 E-value=2.6e+02 Score=29.36 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 008574 171 LEKQNKKLVE 180 (561)
Q Consensus 171 LEkENqeL~q 180 (561)
++.||.+|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 314
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=25.92 E-value=6.4e+02 Score=24.78 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=16.5
Q ss_pred hhcccccCCCcccccchhhHHHHHHH
Q 008574 455 MHSYKDCKIPVDWMLDSGIISKIKQA 480 (561)
Q Consensus 455 ~~ryk~~~Ip~~wmlD~gii~kiK~a 480 (561)
-.-|+.+|+|++||.. =|..||..
T Consensus 114 re~Y~sLgVP~~~~v~--al~~lk~~ 137 (164)
T CHL00173 114 REVYRTLNLPTSAYVA--SFAFARDR 137 (164)
T ss_pred HHHHHHhCCCHHHHHH--HHHHHHHH
Confidence 3579999999999864 23344444
No 315
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=25.78 E-value=42 Score=43.38 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=5.6
Q ss_pred HHHHHhhhhh
Q 008574 509 EALLLQGLHF 518 (561)
Q Consensus 509 ~~lL~qgvrF 518 (561)
..|.||.|+|
T Consensus 1679 AQLiw~~V~~ 1688 (1806)
T PRK14849 1679 AQITWMGVKD 1688 (1806)
T ss_pred EEEEEEEecC
Confidence 3456666655
No 316
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.58 E-value=3.2e+02 Score=22.53 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=12.3
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVF 155 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELe 155 (561)
...+++..|+..++++++++.|+.
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444
No 317
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.48 E-value=5e+02 Score=31.96 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 008574 471 SGIISKIKQASMKLAQMYM 489 (561)
Q Consensus 471 ~gii~kiK~asv~la~~ym 489 (561)
-|+|+.-| +|--|-.||
T Consensus 836 EGLISAaK--AVa~aatvL 852 (980)
T KOG0980|consen 836 EGLISAAK--AVAWAATVL 852 (980)
T ss_pred HHHHHHHH--HHHHHHHHH
Confidence 47776666 444555555
No 318
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=25.46 E-value=1.2e+02 Score=34.10 Aligned_cols=9 Identities=22% Similarity=0.306 Sum_probs=5.2
Q ss_pred HHHHHhHHH
Q 008574 365 LEFVDWLDK 373 (561)
Q Consensus 365 ~~fv~wld~ 373 (561)
..|.+.||+
T Consensus 477 ~~FMkEM~g 485 (487)
T KOG4672|consen 477 NAFMKEMDG 485 (487)
T ss_pred HHHHHHHhc
Confidence 366666654
No 319
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=25.44 E-value=4.6e+02 Score=22.88 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQ 181 (561)
...+++.++.+-..|+..++....+||.....++++
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666655544443
No 320
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.42 E-value=4.2e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.|.++|..+..+++.|....+++++.++.+|
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444445555554443
No 321
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.39 E-value=4.5e+02 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=10.7
Q ss_pred HHHHhhhhhhhhhhc
Q 008574 510 ALLLQGLHFAYRAHQ 524 (561)
Q Consensus 510 ~lL~qgvrFAfRvhq 524 (561)
.-.+.+++||=||=+
T Consensus 625 ~Etl~sL~FA~rv~~ 639 (670)
T KOG0239|consen 625 FETLCSLRFATRVRS 639 (670)
T ss_pred hhhhhccchHHHhhc
Confidence 455668888888754
No 322
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.34 E-value=2.1e+02 Score=32.56 Aligned_cols=23 Identities=4% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 008574 174 QNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 174 ENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+.+.++.|+-+++.++.+++++.
T Consensus 324 d~~~~q~q~~~Lrs~~~d~EAq~ 346 (554)
T KOG4677|consen 324 DSAHIQDQYTLLRSQIIDIEAQD 346 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666644
No 323
>PRK11519 tyrosine kinase; Provisional
Probab=25.30 E-value=4.1e+02 Score=31.23 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=8.9
Q ss_pred hhhhhhhhhhccc
Q 008574 286 SFAQLYHSLTKQV 298 (561)
Q Consensus 286 ~~veLy~sLk~K~ 298 (561)
...|-||+|+...
T Consensus 505 ~~~Ea~r~lrt~l 517 (719)
T PRK11519 505 LAIEAIRSLRTSL 517 (719)
T ss_pred HHHHHHHHHHHHh
Confidence 3578888877554
No 324
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.29 E-value=1.5e+02 Score=28.45 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSL-----NAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~-----NeELEkENqeL~qQLsqAeaQIs 190 (561)
...+|+.|+.++++|+.....+ -.+++++..++..|+..+..++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777666654322 34455555555555555555543
No 325
>PRK00295 hypothetical protein; Provisional
Probab=25.23 E-value=4.1e+02 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=12.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFA 156 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELea 156 (561)
..+|+.++.-.+..+.+|-..+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~ 30 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555444444444333
No 326
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=24.90 E-value=2.1e+02 Score=30.29 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 142 lnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+..++...|+.+...+++|.+.+..++++++.++....+.+...-..+
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888887776666666555555
No 327
>PHA03011 hypothetical protein; Provisional
Probab=24.90 E-value=5.4e+02 Score=23.91 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.++.+.++.---.+.+|-.|-.-+..|...+....++--.+..-|+.|++.++.+++.+
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 34444444433344444444444444444444444455556666777777777777654
No 328
>PHA03185 UL14 tegument protein; Provisional
Probab=24.88 E-value=7.8e+02 Score=25.36 Aligned_cols=12 Identities=33% Similarity=0.221 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 008574 178 LVEDLVAAEAKI 189 (561)
Q Consensus 178 L~qQLsqAeaQI 189 (561)
-+.+|..+...+
T Consensus 116 kEd~L~dA~~~~ 127 (214)
T PHA03185 116 QEEQLEEAAANA 127 (214)
T ss_pred HHHHHHHHHHHh
Confidence 334444455444
No 329
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.88 E-value=3.6e+02 Score=29.74 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=17.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkk 159 (561)
+...+|.+.+....+.+.+++..+..+.+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44466666666666666666666555443
No 330
>PRK04325 hypothetical protein; Provisional
Probab=24.86 E-value=4.4e+02 Score=22.46 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=8.6
Q ss_pred HHHHHHHHhHhHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQ 151 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQ 151 (561)
..+|+.++.-.+..+.+|-
T Consensus 11 i~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555544443333333
No 331
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=24.86 E-value=24 Score=38.74 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHH
Q 008574 335 IKADIETKGGFINS 348 (561)
Q Consensus 335 Ik~DVe~~~~~I~~ 348 (561)
||+-|..-..-+.+
T Consensus 109 IKAAvRAERRRl~e 122 (386)
T PF01698_consen 109 IKAAVRAERRRLEE 122 (386)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhhc
Confidence 55555544444444
No 332
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.83 E-value=2.2e+02 Score=32.36 Aligned_cols=30 Identities=30% Similarity=0.161 Sum_probs=11.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
|--++...+..++.|..+-..|++|.++|+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444443
No 333
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=23.99 E-value=56 Score=29.68 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=5.1
Q ss_pred Chhhhhhhhhhc
Q 008574 285 PSFAQLYHSLTK 296 (561)
Q Consensus 285 P~~veLy~sLk~ 296 (561)
|.++. |+.|++
T Consensus 84 PSviS-YF~Ltg 94 (97)
T PF04834_consen 84 PSVIS-YFHLTG 94 (97)
T ss_pred CCeee-EEeecc
Confidence 44443 455554
No 334
>PRK02224 chromosome segregation protein; Provisional
Probab=23.97 E-value=4.8e+02 Score=30.91 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=7.5
Q ss_pred CCCchHHhHHHHH
Q 008574 527 GGLDSETLCAFEE 539 (561)
Q Consensus 527 GG~D~~t~~afeE 539 (561)
+|+|......|-+
T Consensus 822 ~~lD~~~~~~~~~ 834 (880)
T PRK02224 822 VFLDSGHVSQLVD 834 (880)
T ss_pred ccCCHHHHHHHHH
Confidence 6777775444433
No 335
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.90 E-value=3.7e+02 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+..++.+...++.++..+.++...++.+.
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 336
>PF14282 FlxA: FlxA-like protein
Probab=23.87 E-value=4.1e+02 Score=23.90 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=31.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+..|++++..-...+.+|...-. + --+.-+.....|+.+...|+.++.++..+...-.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~-~--~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSD-L--DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666665544444444432100 0 1122344556667777777777777777765444
No 337
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.77 E-value=2.5e+02 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+++.+..++..++.+...++.++.+++.++..+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444444444555555555555555543
No 338
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.76 E-value=3.9e+02 Score=34.58 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=6.9
Q ss_pred ccCHHHHHHHHHhHHHHh
Q 008574 358 YTNIEDLLEFVDWLDKEL 375 (561)
Q Consensus 358 ~~di~~v~~fv~wld~~L 375 (561)
+.|.+++..+..-.+..|
T Consensus 550 ~~~~~~~~~~~~~~~~~~ 567 (1486)
T PRK04863 550 LDDEDELEQLQEELEARL 567 (1486)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 333444443333333333
No 339
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=23.68 E-value=3.4e+02 Score=28.79 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=27.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
|...+.++.|+....-++.+..+|..|+.. +.-......||.|....+.+..-+++|+..++.
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 333344444444444444444444433321 111122444555555555555555666655554
No 340
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=23.65 E-value=59 Score=42.11 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=3.1
Q ss_pred hhhccc
Q 008574 293 SLTKQV 298 (561)
Q Consensus 293 sLk~K~ 298 (561)
.|..|.
T Consensus 1502 tLhdR~ 1507 (1806)
T PRK14849 1502 RLHDRL 1507 (1806)
T ss_pred hHHHhc
Confidence 455554
No 341
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.51 E-value=1.4e+02 Score=34.95 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=8.5
Q ss_pred hhhHHHhhhcccCCCCCc
Q 008574 408 LKQLENEISSYRDDTNVP 425 (561)
Q Consensus 408 L~~l~~e~s~~~d~p~~p 425 (561)
|..+-.++.+|-...++-
T Consensus 562 l~~~~~~~~~~~~~~~~~ 579 (620)
T PRK14954 562 LSKEIESFYGIPLKLQIR 579 (620)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 344445555554444433
No 342
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.48 E-value=6e+02 Score=27.75 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=4.3
Q ss_pred hhhhhhcC
Q 008574 69 SRRALILN 76 (561)
Q Consensus 69 ~~r~~~~n 76 (561)
.+++++.+
T Consensus 70 l~kaL~~~ 77 (342)
T PF06632_consen 70 LKKALTGQ 77 (342)
T ss_dssp HHHHHTSS
T ss_pred HHHHHhcC
Confidence 45566544
No 343
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=23.47 E-value=3.8e+02 Score=31.31 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 164 L~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
|..+.++++.||..|+.+=..++.|+..|.+
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4455666777777777777777777766654
No 344
>PRK04325 hypothetical protein; Provisional
Probab=23.45 E-value=4.7e+02 Score=22.29 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.+|+..+.-...-++.|.+...+.+++...|+.++..+..++
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333333333333333343333333
No 345
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.44 E-value=5.9e+02 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.2
Q ss_pred hhHHHHHHHHh
Q 008574 208 KFKDVQKLIAN 218 (561)
Q Consensus 208 ~~KkIQklia~ 218 (561)
.+++|...+..
T Consensus 114 i~~~i~~~v~~ 124 (158)
T PF03938_consen 114 IQKKINKAVEE 124 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555554443
No 346
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.36 E-value=6e+02 Score=30.53 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.9
Q ss_pred HHHHHHhhhhh
Q 008574 397 AMREAAVEYRD 407 (561)
Q Consensus 397 alReAa~~Y~~ 407 (561)
+||.+-..|.+
T Consensus 746 ~Lr~~v~~~L~ 756 (782)
T PRK00409 746 KLRKGVQEFLK 756 (782)
T ss_pred HHHHHHHHHHc
Confidence 55555555543
No 347
>PHA03395 p10 fibrous body protein; Provisional
Probab=23.12 E-value=2.1e+02 Score=25.59 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHhcc--ccCHHHHHHHHHhHHHHh
Q 008574 331 HLLAIKADIETKGGFINSLIQKVLAAA--YTNIEDLLEFVDWLDKEL 375 (561)
Q Consensus 331 ~l~aIk~DVe~~~~~I~~L~~~i~~~~--~~di~~v~~fv~wld~~L 375 (561)
-|++|.+||...-+-+..|...|.... +.|.++|-.+.+-+...|
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~L 51 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASL 51 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHH
Confidence 478899999988888888888887754 677777777765555444
No 348
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.07 E-value=3.6e+02 Score=32.57 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=27.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 141 dlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
......++.|..++.++++.++.+....+.|...+..|++++++++.
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333444555566666666666655566666666666666666664
No 349
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.06 E-value=4.4e+02 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=9.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVK 163 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEk 163 (561)
++.-.+.++.|..++.+|..++..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433
No 350
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.03 E-value=5e+02 Score=30.07 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=5.8
Q ss_pred cccccCcccc
Q 008574 52 ARAKSVPADV 61 (561)
Q Consensus 52 ~ra~s~~~~~ 61 (561)
|+|.|||-..
T Consensus 280 p~~~svpy~~ 289 (518)
T PF10212_consen 280 PCPESVPYEE 289 (518)
T ss_pred CCCccCChHH
Confidence 5666666543
No 351
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.02 E-value=7.2e+02 Score=26.53 Aligned_cols=84 Identities=27% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhh
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~ 209 (561)
.+....++.+.+.....+..++.|+.....-..+|...-.+|+++|+.+..+......+-..... +..++=....
T Consensus 42 ~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~-----el~~kFq~~L 116 (309)
T PF09728_consen 42 QKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRK-----ELSEKFQATL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 008574 210 KDVQKLIAN 218 (561)
Q Consensus 210 KkIQklia~ 218 (561)
++||..+..
T Consensus 117 ~dIq~~~ee 125 (309)
T PF09728_consen 117 KDIQAQMEE 125 (309)
T ss_pred HHHHHHHHh
No 352
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=22.99 E-value=4.6e+02 Score=28.55 Aligned_cols=65 Identities=14% Similarity=0.298 Sum_probs=39.7
Q ss_pred hhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcccccch
Q 008574 404 EYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDS 471 (561)
Q Consensus 404 ~Y~~L~~l~~e~s~~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~r~~~~~ryk~~~Ip~~wmlD~ 471 (561)
.|.+ =++.-+..|++.-...+...=.|.+..+.++...+.++...++...++.. ..++|.|.+|.
T Consensus 264 dy~d--I~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~-~~~~fswif~r 328 (330)
T PF03405_consen 264 DYAD--ILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERADRRAARMA-KPVPFSWIFNR 328 (330)
T ss_dssp HHHH--HHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTSTTTSSS---EEE-GGGTT-
T ss_pred HHHH--HHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-CCCceeeecCC
Confidence 3544 55667788887776677777777787888887776666555444444444 56899999875
No 353
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.95 E-value=2.7e+02 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
|.+.++.+..++..+.+|+..|+.++.....+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 354
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.94 E-value=5.3e+02 Score=32.88 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=34.1
Q ss_pred HhHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQ-SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQ-sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
....+|++-+........+|+ .+..-++.+.........+.+.+.+.|..++.+++.++..+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566655555555555665 34334445555555555555555666666666666555444
No 355
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.87 E-value=1.8e+02 Score=28.72 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=25.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQ 181 (561)
-.+.+.++.+|+.||.....|+..|.+...-.|+...+|+..
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666677777777777666666555555555544444443
No 356
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.85 E-value=8.8e+02 Score=25.25 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=5.8
Q ss_pred hhhhhhcccc
Q 008574 290 LYHSLTKQVE 299 (561)
Q Consensus 290 Ly~sLk~K~e 299 (561)
|+++|+.=..
T Consensus 155 L~n~L~~mF~ 164 (233)
T COG3416 155 LANGLEGMFR 164 (233)
T ss_pred HHHHHHHHhc
Confidence 5666665554
No 357
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.85 E-value=3.2e+02 Score=34.07 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.4
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqe 177 (561)
.+++.-|++.++.......+|++||+.+..|++++.+.+.++..+...
T Consensus 183 e~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~r 230 (1195)
T KOG4643|consen 183 EKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHR 230 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366667777777777777788888888888888888877776665443
No 358
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=22.82 E-value=2.4e+02 Score=34.04 Aligned_cols=20 Identities=0% Similarity=-0.071 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEk 173 (561)
+...+.+-+.++++...+..
T Consensus 582 ~aeI~~~~~~~m~r~q~~~q 601 (988)
T KOG0965|consen 582 LAEIQRMSENLMGRDQKPTQ 601 (988)
T ss_pred cHHHHHHhHhHhhhhhhhhh
Confidence 44444554555555554443
No 359
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.79 E-value=99 Score=35.43 Aligned_cols=17 Identities=53% Similarity=0.642 Sum_probs=9.7
Q ss_pred HHhhc--CCchhhHHHHHH
Q 008574 384 VLKHF--KWPEKKADAMRE 400 (561)
Q Consensus 384 VL~~F--~wPe~K~dalRe 400 (561)
+|||. .--+++.+++|.
T Consensus 313 slkhh~akk~e~~eea~~a 331 (900)
T KOG4425|consen 313 SLKHHKAKKKEKHEEAMRA 331 (900)
T ss_pred eHHHHHhhhhhhHHHHHHH
Confidence 57776 444555566554
No 360
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.79 E-value=5.4e+02 Score=22.77 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.|.-|+.|++.+...|..|..+++.+...-..+..+...|+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556677777777777777776665555444555554444
No 361
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=22.52 E-value=4.6e+02 Score=28.02 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=8.4
Q ss_pred HHHHHHhHhHHHHHHHH
Q 008574 135 EFEEKLMLSENLVKDLQ 151 (561)
Q Consensus 135 ELeeKLdlnEnlikELQ 151 (561)
||.+++.....+...|.
T Consensus 3 el~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLL 19 (378)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555554444444444
No 362
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.40 E-value=6.8e+02 Score=25.03 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVF----ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELe----aLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
..-..++.+++..+..++.|+.++. ....++........++..+++.|..++..+...|.+
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.38 E-value=4.9e+02 Score=25.21 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008574 175 NKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 175 NqeL~qQLsqAeaQIss 191 (561)
+..+.+++..++.++..
T Consensus 156 ~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 33444555555555533
No 364
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.34 E-value=1.3e+02 Score=34.69 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+..|...+......|+.|...|+.+..++..+|..++
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333333344444444444444444444444443333
No 365
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.26 E-value=2.4e+02 Score=32.66 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=6.5
Q ss_pred CchhhHHHHHH
Q 008574 390 WPEKKADAMRE 400 (561)
Q Consensus 390 wPe~K~dalRe 400 (561)
|...|+..+|.
T Consensus 272 ~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 272 WYKRKIQEIRT 282 (546)
T ss_pred HHHHHHHHHHh
Confidence 55666666664
No 366
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=22.25 E-value=8.4e+02 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=23.9
Q ss_pred CchhhHHHHHHHHhhhhh--hhhHHHhhhcc-cCCCCCchHHH
Q 008574 390 WPEKKADAMREAAVEYRD--LKQLENEISSY-RDDTNVPFGAA 429 (561)
Q Consensus 390 wPe~K~dalReAa~~Y~~--L~~l~~e~s~~-~d~p~~p~~~a 429 (561)
|-+.-..-+|+|-..-++ ++.+.++++++ +.+| +..|.+
T Consensus 116 ~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~~p-i~~d~~ 157 (209)
T COG5124 116 FTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKIEP-IRWDAA 157 (209)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccccccCc-hhHHHH
Confidence 555555556665554443 77888899999 4555 444443
No 367
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=22.23 E-value=1.7e+02 Score=23.21 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.2
Q ss_pred hhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 008574 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA 355 (561)
Q Consensus 319 ~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~ 355 (561)
..+++.|.-=..-+..++.|++.|...|.+|+..|..
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677788899999999999999999875
No 368
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=22.23 E-value=2.2e+02 Score=33.29 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.|+.++..|++|+++|.....++.++...+.+++..+-.+|
T Consensus 515 nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 515 NLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444444444444333
No 369
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.17 E-value=4.6e+02 Score=21.75 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
.+|.+++.+|...+.+|......+..+.+..+++-.++
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333333
No 370
>PRK00295 hypothetical protein; Provisional
Probab=22.16 E-value=4.7e+02 Score=21.90 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
+.+|+..+.-...-++.|.....+.+++...|+.++..+..++.++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544444444444444444444444444444444444333
No 371
>PHA03346 US22 family homolog; Provisional
Probab=22.16 E-value=50 Score=37.74 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.2
Q ss_pred hhcCCCCCcCC
Q 008574 73 LILNKPKSAEG 83 (561)
Q Consensus 73 ~~~n~~k~~~~ 83 (561)
|.|.+|-.+..
T Consensus 199 V~L~TPG~~~~ 209 (520)
T PHA03346 199 VNLHTPGRHAQ 209 (520)
T ss_pred EEEeCCCCCCc
Confidence 44555544443
No 372
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.15 E-value=5.2e+02 Score=32.25 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=20.3
Q ss_pred hhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhc
Q 008574 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAA 356 (561)
Q Consensus 319 ~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~ 356 (561)
..+|.|.+....=+..+.+..+....-+..|...|..+
T Consensus 966 ~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~ 1003 (1163)
T COG1196 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555555555555555555555555444443
No 373
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.10 E-value=6.9e+02 Score=27.26 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=23.4
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkE 174 (561)
...-|.+++......+.+|+.++....+|+..+......|+.-
T Consensus 245 vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~a 287 (384)
T PF03148_consen 245 VNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKA 287 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666655555555555555555444443
No 374
>PRK00736 hypothetical protein; Provisional
Probab=22.06 E-value=4.8e+02 Score=21.89 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+.-+.+|+..+.-...-++.|.....+..++...|+.++..+..++.++..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 375
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.05 E-value=9.4e+02 Score=28.52 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH--------------------------------HHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSL------NAELEKQ--------------------------------NKK 177 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~------NeELEkE--------------------------------Nqe 177 (561)
+.+.++.-...|..|+.++.++..+++++... .+++.+| |..
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~ 387 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRK 387 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHHHHhhhhcccccccccccCC--------CCCCCCCCCC---CC
Q 008574 178 LVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETS--------INTPPSEPKI---PI 246 (561)
Q Consensus 178 L~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQklia~kLE~S~~~~~a~~~~~--------~~~~p~Ppp~---p~ 246 (561)
|+.++..++-....+.+.-++....-.++.-.-.-|+=.-.+||++..+.++.+... ++..|++.+. +.
T Consensus 388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~~~~~~~~~~~~v~e~s~~~~~ 467 (629)
T KOG0963|consen 388 LQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGATARREEGSGQPVPESSIMGGG 467 (629)
T ss_pred hhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcchhhhcccCCcCCCcccccCCC
Q ss_pred CccccCCCCCCCCC
Q 008574 247 RNAAGVERKPQAYP 260 (561)
Q Consensus 247 p~~~~~~~k~~~~p 260 (561)
|..+..+.-+..+|
T Consensus 468 p~~~~~~~~s~~l~ 481 (629)
T KOG0963|consen 468 PSLPNGGVLSRILS 481 (629)
T ss_pred CCccccccccccch
No 376
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.99 E-value=6.8e+02 Score=24.62 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=9.5
Q ss_pred hHHHHHHHHhHhHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQ 151 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQ 151 (561)
....|+.+++..+..+.+|+
T Consensus 52 ~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555544444444444
No 377
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=21.92 E-value=1.3e+02 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=10.8
Q ss_pred hhhhhHHHHhcchhhH
Q 008574 317 AHSSIVGEIQNRSAHL 332 (561)
Q Consensus 317 a~~~~i~Ei~nRSa~l 332 (561)
....+-+|+.+|-++-
T Consensus 258 ~~~~l~a~~~~~~~~~ 273 (409)
T KOG4590|consen 258 GMASLMAEMAKRLARR 273 (409)
T ss_pred hhhhhhhhhhhcccee
Confidence 4567778887766554
No 378
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=4.1e+02 Score=31.21 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK 210 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~K 210 (561)
+.+.+|.+--.-.+-.+-.|+.+|..++-.-..+.+...+||.||-.|+.+|+.+++---+.++ +-.
T Consensus 135 ~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg-------------lkh 201 (772)
T KOG0999|consen 135 KVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG-------------LKH 201 (772)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH-------------HHH
Q ss_pred HHHHHHHh
Q 008574 211 DVQKLIAN 218 (561)
Q Consensus 211 kIQklia~ 218 (561)
+|.++.-+
T Consensus 202 eikRleEe 209 (772)
T KOG0999|consen 202 EIKRLEEE 209 (772)
T ss_pred HHHHHHHH
No 379
>PRK10698 phage shock protein PspA; Provisional
Probab=21.80 E-value=5e+02 Score=26.31 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=5.7
Q ss_pred HHHHHhHhHHHHHHH
Q 008574 136 FEEKLMLSENLVKDL 150 (561)
Q Consensus 136 LeeKLdlnEnlikEL 150 (561)
++.++......+.+|
T Consensus 57 ~er~~~~~~~~~~~~ 71 (222)
T PRK10698 57 LTRRIEQAEAQQVEW 71 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 380
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.75 E-value=9.3e+02 Score=29.67 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=33.5
Q ss_pred hHhHHHHHHHHhHhHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQ-----------------SEVFALKAEFVK----AQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQ-----------------sELeaLkkElEk----L~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
-....|++++|..---+++.|. ++|.++..+++. +.++.+++++|...-.+++.....|
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~q 571 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQ 571 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4566777777755444444443 234444333333 2334555666555555555555555
Q ss_pred Hhhhhh
Q 008574 189 IASLSS 194 (561)
Q Consensus 189 IssL~s 194 (561)
+.+|+.
T Consensus 572 lkelk~ 577 (1118)
T KOG1029|consen 572 LKELKE 577 (1118)
T ss_pred HHHHHH
Confidence 555554
No 381
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=21.71 E-value=67 Score=32.71 Aligned_cols=67 Identities=21% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhhhccCChhhHHHHH-HHHhhhhcccc-cccccccCCCCCCCC--CCCCCCCccc
Q 008574 184 AAEAKIASLSSREQREAVGEYQSPKFKDVQK-LIANKLEHSIV-MTDAISETSINTPPS--EPKIPIRNAA 250 (561)
Q Consensus 184 qAeaQIssL~s~~~e~~~~e~qs~~~KkIQk-lia~kLE~S~~-~~~a~~~~~~~~~p~--Ppp~p~p~~~ 250 (561)
+.+.++..|.....+...-..+....++-.+ +..+|-++|.. .+.+++...+.+-++ |||||.|+++
T Consensus 109 r~Ev~lsDLl~~e~~ia~~~e~~~~~~~~~~Q~s~nk~~~s~sp~T~sa~~~~s~p~~sfmpppPP~pp~i 179 (218)
T KOG4327|consen 109 REEVNLSDLLSPECEIANNIEQNAQENENESQVSTNKSENSRSPGTKSANIKKSAPWNSFMPPPPPMPPPI 179 (218)
T ss_pred hhhhhHHHhcccHHHHHHHHHHHhhccchhhhhccccccccCCCCCccccccccCCccccCCCCCCCCccc
No 382
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=21.71 E-value=4.7e+02 Score=29.95 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=6.9
Q ss_pred hhHHHHHHHH
Q 008574 208 KFKDVQKLIA 217 (561)
Q Consensus 208 ~~KkIQklia 217 (561)
-.++||++|-
T Consensus 572 Ne~rIqk~i~ 581 (583)
T KOG3809|consen 572 NEKRIQKFIS 581 (583)
T ss_pred hHHHHHHHHh
Confidence 4578888764
No 383
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=21.54 E-value=1.4e+02 Score=24.93 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=8.5
Q ss_pred HHHHhHhHHHHHHHHHH
Q 008574 137 EEKLMLSENLVKDLQSE 153 (561)
Q Consensus 137 eeKLdlnEnlikELQsE 153 (561)
+.++.-.+.-+..||.|
T Consensus 2 ~~qv~s~e~~i~FLq~e 18 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQE 18 (60)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444455555555544
No 384
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.54 E-value=5.6e+02 Score=32.69 Aligned_cols=51 Identities=29% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQ-SLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 146 likELQsELeaLkkElEkL~-~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
..++|+..+..++.+...++ .+..-++.+.+....+++..+++...|++..
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~ 517 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALV 517 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555544444444 2333344555556666666666666666544
No 385
>PF15605 Toxin_52: Putative toxin 52
Probab=21.51 E-value=2.6e+02 Score=25.83 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhhhhhHHHhhhcccCCCCCc------hHHHHHHHHHHHHHHHHHH
Q 008574 395 ADAMREAAVEYRDLKQLENEISSYRDDTNVP------FGAALKKMASLLDKSERSI 444 (561)
Q Consensus 395 ~dalReAa~~Y~~L~~l~~e~s~~~d~p~~p------~~~al~km~~lldk~E~~~ 444 (561)
+|-|+|---.|+-|.++...|..---||.++ +..+|.+...+++|||.-|
T Consensus 46 wdHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 46 WDHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999998888888754 4467777778888888765
No 386
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.49 E-value=4e+02 Score=25.02 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
|..|..|...+...+.+|-+-++.|+..+.+-...
T Consensus 34 Ia~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 34 IAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 387
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.44 E-value=4.8e+02 Score=23.22 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
+..+..+.+.|.++..-++.|.++++.+..+.++|.+--.+.+.+
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777777777777777777766655443333333
No 388
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.39 E-value=4.8e+02 Score=21.68 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL 178 (561)
.++.++..+..+.++++.++++|+.|...|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 389
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=4.9e+02 Score=27.25 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.3
Q ss_pred hhhhhh
Q 008574 289 QLYHSL 294 (561)
Q Consensus 289 eLy~sL 294 (561)
+||..|
T Consensus 222 nFs~FL 227 (246)
T KOG4657|consen 222 NFSSFL 227 (246)
T ss_pred cHHHHH
Confidence 333333
No 390
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=21.28 E-value=5.1e+02 Score=28.58 Aligned_cols=64 Identities=23% Similarity=0.190 Sum_probs=46.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSE-------VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsE-------LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
+-.|+++|.....-...+|-+| ++.|+.+++.+..+..+--+|+.++..++...+--|.-|+.+
T Consensus 120 kv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~ 190 (405)
T KOG2010|consen 120 KVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHK 190 (405)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367888887776666666554 778888888887777777777777777777777777666653
No 391
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.16 E-value=6.4e+02 Score=25.16 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 173 KQNKKLVEDLVAAEA 187 (561)
Q Consensus 173 kENqeL~qQLsqAea 187 (561)
.|+..++.....++.
T Consensus 159 ~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 159 KEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 392
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.12 E-value=4.3e+02 Score=23.51 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
-..+|+|...+..++...+.++..|..
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456677777777777777777777775
No 393
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.03 E-value=2.3e+02 Score=27.96 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=40.1
Q ss_pred hhcCCchhhHHHHHHHHhhhhhhhhHHHhhhc------ccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008574 386 KHFKWPEKKADAMREAAVEYRDLKQLENEISS------YRDDTNVPFGAALKKMASLLDKSERSIQ 445 (561)
Q Consensus 386 ~~F~wPe~K~dalReAa~~Y~~L~~l~~e~s~------~~d~p~~p~~~al~km~~lldk~E~~~~ 445 (561)
+.|=|-+.+++|.+|-+.+...|..-+.|.=+ -+|.|+.+ .|..|...++-|+-.++.
T Consensus 76 kpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~--vA~~rfKk~~~K~g~~v~ 139 (158)
T PF10083_consen 76 KPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTK--VAATRFKKILSKAGSIVG 139 (158)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccH--HHHHHHHHHHHHHhHHHH
Confidence 45779999999999999988777766655421 15667643 466666666766655544
No 394
>PRK00846 hypothetical protein; Provisional
Probab=20.97 E-value=5.7e+02 Score=22.34 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=10.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSE 153 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsE 153 (561)
....+|+.++.-.+..+.+|...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~ 35 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEA 35 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444333
No 395
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=5.8e+02 Score=31.48 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+|+..+....+.+..|..++..++.....+|..|++..
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~ 811 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGG 811 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33344444555555666667777777777776666544
No 396
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.95 E-value=9.2e+02 Score=24.76 Aligned_cols=8 Identities=0% Similarity=0.576 Sum_probs=3.1
Q ss_pred hhhhhccc
Q 008574 291 YHSLTKQV 298 (561)
Q Consensus 291 y~sLk~K~ 298 (561)
|..+..|.
T Consensus 168 fer~e~ki 175 (225)
T COG1842 168 FERMEEKI 175 (225)
T ss_pred HHHHHHHH
Confidence 33344433
No 397
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.90 E-value=5.7e+02 Score=29.00 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElE 162 (561)
.-+..++.+.|.++++||.|..++..|.-
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556566666655555554433
No 398
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=20.89 E-value=7.1e+02 Score=28.17 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=7.6
Q ss_pred hhhhhhhcCCCCCcCCc
Q 008574 68 KSRRALILNKPKSAEGA 84 (561)
Q Consensus 68 ~~~r~~~~n~~k~~~~~ 84 (561)
|++=.+|==.||----+
T Consensus 29 karLrlF~LRPkqTAvl 45 (499)
T COG4372 29 KARLRLFGLRPKQTAVL 45 (499)
T ss_pred HHHHhHhccCcccceee
Confidence 44444443355554433
No 399
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.82 E-value=5.3e+02 Score=28.99 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHH-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCh-hhHHHH
Q 008574 136 FEEKL-MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSP-KFKDVQ 213 (561)
Q Consensus 136 LeeKL-dlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~-~~KkIQ 213 (561)
|+++. .+.+....+++-=.++|++|.-+.....+.|..-..-.+.++..++.++..++ +-+-||+. +.++||
T Consensus 279 Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasme------ervaYQsyERaRdIq 352 (455)
T KOG3850|consen 279 LEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASME------ERVAYQSYERARDIQ 352 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHh------hhhcccccccc
Q 008574 214 KLIAN------KLEHSIVMTDA 229 (561)
Q Consensus 214 klia~------kLE~S~~~~~a 229 (561)
+.+-. |||.-..-+++
T Consensus 353 EalEscqtrisKlEl~qq~qqv 374 (455)
T KOG3850|consen 353 EALESCQTRISKLELQQQQQQV 374 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 400
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.80 E-value=3.2e+02 Score=28.74 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 008574 168 NAELEKQNKKLVE 180 (561)
Q Consensus 168 NeELEkENqeL~q 180 (561)
...+++||++|+.
T Consensus 92 ~~~l~~EN~~Lr~ 104 (284)
T COG1792 92 VESLEEENKRLKE 104 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 401
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.76 E-value=5.2e+02 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=17.1
Q ss_pred HHHHhhhhhhhcccccCCCcccc-cchhh
Q 008574 446 RLVKLRNSVMHSYKDCKIPVDWM-LDSGI 473 (561)
Q Consensus 446 ~l~r~r~~~~~ryk~~~Ip~~wm-lD~gi 473 (561)
-+..+.+....=|+.+|||+-++ +.+|-
T Consensus 297 ~~~~~l~~~~~i~~~Lglpyr~v~~~s~d 325 (425)
T PRK05431 297 ELEELTANAEEILQKLELPYRVVLLCTGD 325 (425)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 33444444555678889998773 45553
No 402
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=20.75 E-value=1.7e+02 Score=32.09 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=10.1
Q ss_pred hhhhhhhHHHHhhcCCc
Q 008574 375 LSSLADERAVLKHFKWP 391 (561)
Q Consensus 375 L~~L~DEraVL~~F~wP 391 (561)
|...+-|---|.||+|-
T Consensus 174 l~~~v~~lc~l~~f~fN 190 (420)
T PF07407_consen 174 LLNRVIELCALLHFGFN 190 (420)
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 44445555567777665
No 403
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.67 E-value=3.6e+02 Score=27.53 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=25.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQ 181 (561)
.++.=|.+.|......+..--+||.+|+..+..........+.+...|...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~ 60 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDS 60 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444555555555554444444555555555555554444444444444443
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=20.66 E-value=6.7e+02 Score=23.09 Aligned_cols=44 Identities=32% Similarity=0.333 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
|+.+..-|++-+-.-+..+.+|..+.+.-.+.+..++.++.+|.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333334444444444333
No 405
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.57 E-value=4.5e+02 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=5.5
Q ss_pred HHHHhHhHHHHHHHH
Q 008574 137 EEKLMLSENLVKDLQ 151 (561)
Q Consensus 137 eeKLdlnEnlikELQ 151 (561)
+.++........+|+
T Consensus 58 e~~~~~~~~~~~k~e 72 (225)
T COG1842 58 ERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 406
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.21 E-value=8.1e+02 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 164 AQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 164 L~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
......++.+||++|++|+..++.++..+
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666655555544
No 407
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=20.16 E-value=2.6e+02 Score=32.85 Aligned_cols=53 Identities=25% Similarity=0.120 Sum_probs=36.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
|-.|.+.-..+..=|+.|+++.++-+.+|+.++.+||.|.+.++++...++.+
T Consensus 327 LIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334445678888888888888888888888888888877666544
No 408
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.08 E-value=5.2e+02 Score=29.43 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=7.3
Q ss_pred HhHHHHHHHHhHhHHH
Q 008574 131 KKKKEFEEKLMLSENL 146 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnl 146 (561)
....+++++|..-..+
T Consensus 301 ~~L~ele~RL~~l~~L 316 (563)
T TIGR00634 301 ERLNEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444443
No 409
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.07 E-value=6.7e+02 Score=26.93 Aligned_cols=20 Identities=15% Similarity=0.494 Sum_probs=9.2
Q ss_pred HHHhcchhhHHHHHHHHhhh
Q 008574 323 GEIQNRSAHLLAIKADIETK 342 (561)
Q Consensus 323 ~Ei~nRSa~l~aIk~DVe~~ 342 (561)
+.++|=-.+|..+..|.-++
T Consensus 265 ~~~En~d~~~~d~qrdanrq 284 (302)
T PF09738_consen 265 EDLENTDLHFIDLQRDANRQ 284 (302)
T ss_pred cccccccccHHHhhhHHHHH
Confidence 44555123444455555554
No 410
>PLN02678 seryl-tRNA synthetase
Probab=20.06 E-value=6.9e+02 Score=28.22 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHH
Q 008574 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQK 214 (561)
Q Consensus 138 eKLdlnEnlikELQsELeaLkkElEkL~~~NeELEk---ENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQk 214 (561)
.++......+.+++.+++.++.+...+..+...+.. +..++..++..++.++..++....+ ...+|+.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~---------~~~~l~~ 103 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE---------AKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Q ss_pred HHHh
Q 008574 215 LIAN 218 (561)
Q Consensus 215 lia~ 218 (561)
++..
T Consensus 104 ~~~~ 107 (448)
T PLN02678 104 KLKT 107 (448)
T ss_pred HHHh
No 411
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.00 E-value=6.2e+02 Score=33.61 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=13.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALK 158 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLk 158 (561)
.+..|+++|...++.+.+|..++..++
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444443
Done!