Query 008574
Match_columns 561
No_of_seqs 231 out of 281
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnx_A Diaphanous protein homo 93.9 0.0061 2.1E-07 63.6 -1.6 61 98-160 302-369 (386)
2 2jee_A YIIU; FTSZ, septum, coi 92.5 0.91 3.1E-05 38.4 9.8 59 132-190 7-72 (81)
3 3hnw_A Uncharacterized protein 90.7 1.5 5.2E-05 40.0 10.0 60 135-194 72-131 (138)
4 3hnw_A Uncharacterized protein 89.6 2.5 8.4E-05 38.6 10.4 53 134-186 78-130 (138)
5 1wt6_A Myotonin-protein kinase 87.6 3.8 0.00013 34.7 9.4 62 133-194 12-73 (81)
6 3bas_A Myosin heavy chain, str 84.4 8.5 0.00029 32.4 10.2 65 130-194 20-84 (89)
7 2q6q_A Spindle POLE BODY compo 83.1 7.4 0.00025 32.1 8.8 59 131-189 3-61 (74)
8 3mq9_A Bone marrow stromal ant 82.1 5.8 0.0002 41.3 10.0 21 149-169 401-421 (471)
9 3cve_A Homer protein homolog 1 81.9 11 0.00036 31.3 9.5 60 135-194 4-63 (72)
10 3ol1_A Vimentin; structural ge 80.6 10 0.00034 33.5 9.6 34 131-164 20-53 (119)
11 3ghg_A Fibrinogen alpha chain; 80.1 3 0.0001 45.7 7.1 29 168-196 112-140 (562)
12 3a7p_A Autophagy protein 16; c 80.1 11 0.00039 35.1 10.1 26 168-193 98-123 (152)
13 3cvf_A Homer-3, homer protein 79.3 3.9 0.00013 34.4 6.1 64 131-194 6-69 (79)
14 3cvf_A Homer-3, homer protein 79.2 7 0.00024 32.8 7.6 12 208-219 49-60 (79)
15 3oja_B Anopheles plasmodium-re 77.3 18 0.00061 38.5 12.1 63 131-193 463-543 (597)
16 3oja_B Anopheles plasmodium-re 77.1 10 0.00034 40.4 10.1 17 173-189 544-560 (597)
17 1ci6_A Transcription factor AT 73.3 14 0.00046 29.4 7.5 36 152-187 23-58 (63)
18 3u59_A Tropomyosin beta chain; 72.9 19 0.00065 30.7 8.9 11 183-193 82-92 (101)
19 2v66_B Nuclear distribution pr 72.7 31 0.0011 30.6 10.4 64 134-197 20-87 (111)
20 3swk_A Vimentin; cytoskeleton, 71.3 13 0.00046 31.2 7.5 53 132-184 29-81 (86)
21 3nmd_A CGMP dependent protein 71.0 17 0.00057 30.1 7.7 47 147-193 21-67 (72)
22 3mq7_A Bone marrow stromal ant 70.6 28 0.00096 31.3 9.6 62 134-195 28-100 (121)
23 4emc_A Monopolin complex subun 68.3 22 0.00074 34.3 9.0 55 133-187 8-62 (190)
24 3qh9_A Liprin-beta-2; coiled-c 68.2 28 0.00096 29.4 8.6 49 131-179 26-74 (81)
25 2fxo_A Myosin heavy chain, car 67.3 34 0.0012 30.4 9.7 25 131-155 34-58 (129)
26 2v71_A Nuclear distribution pr 67.1 34 0.0012 32.9 10.2 50 147-196 90-139 (189)
27 1ci6_A Transcription factor AT 65.0 16 0.00055 28.9 6.3 35 159-193 23-57 (63)
28 2v4h_A NF-kappa-B essential mo 64.8 42 0.0014 29.8 9.4 33 132-164 25-57 (110)
29 1t2k_D Cyclic-AMP-dependent tr 63.7 17 0.00058 28.3 6.2 35 154-188 24-58 (61)
30 2jee_A YIIU; FTSZ, septum, coi 63.5 60 0.002 27.4 9.8 43 152-194 20-62 (81)
31 2yy0_A C-MYC-binding protein; 63.3 9.8 0.00033 29.5 4.6 31 152-182 19-49 (53)
32 3he5_A Synzip1; heterodimeric 62.8 38 0.0013 25.4 7.5 42 145-186 3-44 (49)
33 3oja_A Leucine-rich immune mol 61.6 39 0.0013 35.2 10.4 42 153-194 436-477 (487)
34 2xdj_A Uncharacterized protein 61.0 73 0.0025 26.7 10.0 50 134-183 9-58 (83)
35 3q8t_A Beclin-1; autophagy, AT 60.8 69 0.0023 27.3 10.0 18 168-185 27-44 (96)
36 1t2k_D Cyclic-AMP-dependent tr 60.5 57 0.002 25.3 9.4 36 159-194 22-57 (61)
37 1hjb_A Ccaat/enhancer binding 59.3 21 0.0007 30.4 6.3 29 165-193 42-70 (87)
38 3tnu_B Keratin, type II cytosk 59.3 33 0.0011 30.4 8.0 32 144-175 35-66 (129)
39 3o0z_A RHO-associated protein 58.5 64 0.0022 30.5 10.1 28 133-160 50-77 (168)
40 2wt7_A Proto-oncogene protein 56.9 29 0.001 27.3 6.5 33 154-186 25-57 (63)
41 3mq7_A Bone marrow stromal ant 56.8 46 0.0016 29.9 8.3 30 147-176 73-102 (121)
42 1gu4_A CAAT/enhancer binding p 56.6 25 0.00085 29.3 6.3 31 164-194 41-71 (78)
43 2dfs_A Myosin-5A; myosin-V, in 55.6 56 0.0019 38.6 11.3 11 154-164 986-996 (1080)
44 3na7_A HP0958; flagellar bioge 55.3 74 0.0025 30.9 10.5 43 148-190 35-77 (256)
45 1gd2_E Transcription factor PA 55.1 21 0.00071 29.2 5.4 35 157-191 34-68 (70)
46 1jnm_A Proto-oncogene C-JUN; B 54.8 30 0.001 27.1 6.2 34 161-194 24-57 (62)
47 3a7o_A Autophagy protein 16; c 53.8 50 0.0017 27.4 7.4 56 130-185 17-72 (75)
48 2oqq_A Transcription factor HY 53.7 45 0.0015 25.0 6.5 35 148-182 6-40 (42)
49 2w6a_A ARF GTPase-activating p 53.7 53 0.0018 26.4 7.3 49 131-179 13-61 (63)
50 2eqb_B RAB guanine nucleotide 53.0 80 0.0028 27.4 9.1 54 133-186 7-60 (97)
51 4gkw_A Spindle assembly abnorm 52.9 1.4E+02 0.0047 27.6 11.0 55 132-186 12-73 (167)
52 1jnm_A Proto-oncogene C-JUN; B 52.5 22 0.00074 27.8 5.0 38 152-189 22-59 (62)
53 1hjb_A Ccaat/enhancer binding 52.1 1.1E+02 0.0037 25.9 10.2 41 154-194 38-78 (87)
54 1m1j_A Fibrinogen alpha subuni 50.8 73 0.0025 34.6 10.2 47 166-218 111-157 (491)
55 2wt7_A Proto-oncogene protein 50.5 89 0.003 24.5 9.8 36 159-194 23-58 (63)
56 1ic2_A Tropomyosin alpha chain 50.0 1E+02 0.0036 25.1 10.6 38 152-189 27-64 (81)
57 3q8t_A Beclin-1; autophagy, AT 49.7 1.2E+02 0.0041 25.8 9.8 14 152-165 39-52 (96)
58 4etp_A Kinesin-like protein KA 49.6 39 0.0013 35.5 7.9 13 513-525 385-397 (403)
59 4dci_A Uncharacterized protein 49.4 77 0.0026 29.4 8.9 42 121-162 19-60 (150)
60 3cve_A Homer protein homolog 1 48.7 1.1E+02 0.0039 25.1 9.2 54 131-184 14-67 (72)
61 2eqb_B RAB guanine nucleotide 48.7 65 0.0022 28.0 7.8 28 136-163 31-58 (97)
62 1nkp_B MAX protein, MYC proto- 47.8 27 0.00093 28.5 5.2 31 140-170 42-72 (83)
63 4etp_A Kinesin-like protein KA 47.8 51 0.0017 34.5 8.5 23 476-498 316-339 (403)
64 2efr_A General control protein 47.6 76 0.0026 29.5 8.7 60 131-190 42-115 (155)
65 2fxo_A Myosin heavy chain, car 47.2 1.5E+02 0.0051 26.1 12.2 36 131-166 20-55 (129)
66 3m91_A Proteasome-associated A 47.2 68 0.0023 24.8 6.9 34 157-190 14-47 (51)
67 1gd2_E Transcription factor PA 47.1 49 0.0017 27.0 6.5 44 141-184 25-68 (70)
68 3tnu_A Keratin, type I cytoske 46.8 1.5E+02 0.0051 26.2 10.2 27 147-173 40-66 (131)
69 3na7_A HP0958; flagellar bioge 46.7 89 0.003 30.4 9.5 14 285-298 175-188 (256)
70 3m9b_A Proteasome-associated A 44.2 20 0.00068 35.9 4.4 42 153-194 55-96 (251)
71 1go4_E MAD1 (mitotic arrest de 44.2 1E+02 0.0035 26.9 8.4 18 151-168 18-35 (100)
72 3i00_A HIP-I, huntingtin-inter 44.2 1.2E+02 0.004 27.1 9.0 15 148-162 18-32 (120)
73 1joc_A EEA1, early endosomal a 44.0 1.2E+02 0.0041 26.7 9.1 44 131-174 4-47 (125)
74 3a7p_A Autophagy protein 16; c 43.8 1.8E+02 0.0063 27.0 10.5 15 175-189 98-112 (152)
75 4h22_A Leucine-rich repeat fli 43.8 80 0.0027 27.7 7.7 46 148-193 26-71 (103)
76 2dgc_A Protein (GCN4); basic d 43.4 74 0.0025 25.2 6.9 29 152-180 30-58 (63)
77 1cii_A Colicin IA; bacteriocin 42.8 1.7E+02 0.0057 32.1 11.3 59 136-194 361-419 (602)
78 1m1j_B Fibrinogen beta chain; 42.6 1.1E+02 0.0036 33.2 10.0 24 426-449 166-189 (464)
79 3u06_A Protein claret segregat 42.0 66 0.0023 33.9 8.3 14 512-525 369-382 (412)
80 2v66_B Nuclear distribution pr 41.8 1.8E+02 0.0063 25.6 10.1 26 131-156 3-28 (111)
81 3i00_A HIP-I, huntingtin-inter 41.8 74 0.0025 28.4 7.3 7 134-140 18-24 (120)
82 3oja_A Leucine-rich immune mol 41.6 1.2E+02 0.0042 31.4 10.3 59 136-194 412-470 (487)
83 3eg5_B Protein diaphanous homo 41.6 5.5 0.00019 41.4 -0.0 18 98-115 364-382 (383)
84 1nkp_A C-MYC, MYC proto-oncoge 41.2 62 0.0021 27.1 6.4 36 140-175 47-82 (88)
85 3nmd_A CGMP dependent protein 41.1 61 0.0021 26.8 6.1 48 132-186 20-67 (72)
86 4gkw_A Spindle assembly abnorm 41.0 2.2E+02 0.0075 26.3 10.4 59 131-189 25-83 (167)
87 3tnu_B Keratin, type II cytosk 39.3 1.6E+02 0.0055 25.9 9.2 51 144-194 42-96 (129)
88 2oto_A M protein; helical coil 39.0 2.1E+02 0.0072 25.8 10.2 23 157-179 55-77 (155)
89 1g6u_A Domain swapped dimer; d 38.6 87 0.003 23.4 6.0 26 168-193 22-47 (48)
90 3tnu_A Keratin, type I cytoske 38.2 71 0.0024 28.3 6.7 54 140-193 40-97 (131)
91 2ocy_A RAB guanine nucleotide 38.0 2.5E+02 0.0086 26.1 10.6 35 131-165 58-92 (154)
92 1wt6_A Myotonin-protein kinase 37.9 1.8E+02 0.006 24.6 8.5 28 156-183 42-69 (81)
93 2yy0_A C-MYC-binding protein; 37.7 60 0.002 25.1 5.3 25 160-184 20-44 (53)
94 1wlq_A Geminin; coiled-coil; 2 37.6 1.6E+02 0.0053 25.0 8.2 38 131-172 28-65 (83)
95 3htk_A Structural maintenance 37.4 1.3E+02 0.0045 22.7 8.5 29 134-162 8-36 (60)
96 1i84_S Smooth muscle myosin he 37.2 1.4E+02 0.0047 35.4 10.7 34 132-165 865-898 (1184)
97 2xdj_A Uncharacterized protein 37.2 1.7E+02 0.0058 24.5 8.4 41 154-194 15-55 (83)
98 2oxj_A Hybrid alpha/beta pepti 37.0 67 0.0023 23.1 5.0 25 156-180 5-29 (34)
99 1gu4_A CAAT/enhancer binding p 36.5 1.6E+02 0.0054 24.4 8.1 36 154-189 38-73 (78)
100 1deq_A Fibrinogen (alpha chain 36.4 74 0.0025 33.7 7.4 26 168-193 115-140 (390)
101 1i84_S Smooth muscle myosin he 35.7 93 0.0032 36.8 9.0 46 131-176 857-902 (1184)
102 1deb_A APC protein, adenomatou 35.6 1.3E+02 0.0045 23.4 6.8 22 155-176 20-41 (54)
103 1ic2_A Tropomyosin alpha chain 35.6 1.8E+02 0.0061 23.7 9.7 38 152-189 20-57 (81)
104 1nlw_A MAD protein, MAX dimeri 35.5 63 0.0022 26.6 5.5 34 140-173 42-75 (80)
105 3u59_A Tropomyosin beta chain; 35.5 2E+02 0.0069 24.3 10.0 42 149-190 27-68 (101)
106 2no2_A HIP-I, huntingtin-inter 35.4 2.2E+02 0.0076 24.7 10.1 33 131-163 8-40 (107)
107 4dyl_A Tyrosine-protein kinase 35.0 3.9E+02 0.013 27.5 14.6 40 131-170 302-341 (406)
108 1nkp_B MAX protein, MYC proto- 34.5 86 0.0029 25.5 6.2 35 159-193 47-81 (83)
109 3u06_A Protein claret segregat 34.4 84 0.0029 33.1 7.6 32 158-189 9-40 (412)
110 3m91_A Proteasome-associated A 34.3 1.6E+02 0.0054 22.7 7.1 32 163-194 13-44 (51)
111 2h6f_A Protein farnesyltransfe 34.3 8.4 0.00029 39.2 0.0 8 533-540 337-344 (382)
112 3iv1_A Tumor susceptibility ge 34.0 2.1E+02 0.0071 23.9 10.0 50 144-193 10-59 (78)
113 3he5_B Synzip2; heterodimeric 33.4 1.5E+02 0.0051 22.5 6.6 36 158-193 9-44 (52)
114 3he5_B Synzip2; heterodimeric 33.3 1.1E+02 0.0037 23.2 5.9 42 150-191 8-49 (52)
115 3vkg_A Dynein heavy chain, cyt 33.0 2.1E+02 0.0073 37.9 12.1 49 146-194 2036-2084(3245)
116 3ajm_A Programmed cell death p 32.6 68 0.0023 31.4 6.0 34 318-355 107-140 (213)
117 3efg_A Protein SLYX homolog; x 32.3 1E+02 0.0035 25.4 6.3 29 130-158 13-41 (78)
118 3htk_A Structural maintenance 31.9 1.6E+02 0.0056 22.2 8.8 38 152-189 19-56 (60)
119 2dgc_A Protein (GCN4); basic d 31.8 71 0.0024 25.3 5.0 32 158-189 29-60 (63)
120 1fmh_A General control protein 31.8 58 0.002 22.7 3.8 19 170-188 12-30 (33)
121 2wt7_B Transcription factor MA 31.1 94 0.0032 26.6 6.0 21 169-189 65-85 (90)
122 1lwu_C Fibrinogen gamma chain; 31.0 1.1E+02 0.0038 31.4 7.7 25 134-158 8-32 (323)
123 1fmh_A General control protein 31.0 72 0.0024 22.3 4.2 27 154-180 3-29 (33)
124 3swf_A CGMP-gated cation chann 30.5 1.6E+02 0.0054 24.5 7.0 48 134-191 3-50 (74)
125 3qh9_A Liprin-beta-2; coiled-c 30.4 1.8E+02 0.0061 24.6 7.4 44 152-195 19-62 (81)
126 2ocy_A RAB guanine nucleotide 29.7 3.4E+02 0.012 25.2 10.0 29 165-193 114-142 (154)
127 2efr_A General control protein 29.7 3.4E+02 0.012 25.1 12.0 50 137-186 34-90 (155)
128 3efg_A Protein SLYX homolog; x 29.5 1.4E+02 0.0049 24.5 6.7 8 135-142 11-18 (78)
129 1m1j_C Fibrinogen gamma chain; 29.5 4.2E+02 0.014 28.0 11.9 95 105-221 12-130 (409)
130 1dh3_A Transcription factor CR 29.2 56 0.0019 25.2 3.9 24 164-187 27-50 (55)
131 1dip_A Delta-sleep-inducing pe 28.7 43 0.0015 28.0 3.3 27 153-179 16-42 (78)
132 3ghg_A Fibrinogen alpha chain; 28.6 1.1E+02 0.0037 33.8 7.3 7 105-111 38-46 (562)
133 2wt7_B Transcription factor MA 28.5 1.4E+02 0.0048 25.5 6.6 25 168-192 50-74 (90)
134 1kd8_B GABH BLL, GCN4 acid bas 28.5 1.2E+02 0.0039 22.1 5.0 26 156-181 5-30 (36)
135 1wle_A Seryl-tRNA synthetase; 28.3 2.4E+02 0.0084 30.5 10.1 13 530-542 440-452 (501)
136 3lay_A Zinc resistance-associa 28.2 3.4E+02 0.012 25.5 9.9 34 133-166 73-106 (175)
137 4hpq_C ATG17, KLTH0D15642P; au 27.9 4.6E+02 0.016 27.8 11.9 38 429-467 351-392 (413)
138 3vkg_A Dynein heavy chain, cyt 27.7 1.7E+02 0.0058 38.8 9.9 9 521-529 2671-2679(3245)
139 3swy_A Cyclic nucleotide-gated 27.4 2E+02 0.0069 21.8 6.8 28 135-162 2-29 (46)
140 3o0z_A RHO-associated protein 27.0 4.1E+02 0.014 25.1 11.4 8 133-140 15-22 (168)
141 1x79_B RAB GTPase binding effe 26.3 55 0.0019 29.1 3.8 59 123-183 39-108 (112)
142 1kd8_A GABH AIV, GCN4 acid bas 26.3 1.1E+02 0.0039 22.1 4.7 24 157-180 6-29 (36)
143 3m48_A General control protein 26.2 89 0.0031 22.3 4.1 25 156-180 4-28 (33)
144 3c3g_A Alpha/beta peptide with 25.8 1.4E+02 0.0047 21.4 5.0 23 157-179 5-27 (33)
145 4emc_A Monopolin complex subun 25.7 1.5E+02 0.0051 28.6 6.9 40 154-193 22-61 (190)
146 1deq_A Fibrinogen (alpha chain 25.7 4.7E+02 0.016 27.7 11.2 90 319-415 66-157 (390)
147 2wvr_A Geminin; DNA replicatio 25.6 2.2E+02 0.0075 27.8 8.1 39 130-172 104-142 (209)
148 3m0d_C TNF receptor-associated 25.1 2.5E+02 0.0086 22.1 8.5 37 129-165 4-40 (65)
149 1x4t_A Hypothetical protein LO 24.9 1.7E+02 0.0059 25.2 6.5 14 149-162 56-69 (92)
150 3swk_A Vimentin; cytoskeleton, 24.7 3E+02 0.01 22.8 8.1 52 134-185 3-61 (86)
151 3bas_A Myosin heavy chain, str 24.4 3E+02 0.01 22.8 11.3 48 147-194 23-70 (89)
152 1lwu_C Fibrinogen gamma chain; 24.1 1.6E+02 0.0055 30.2 7.4 12 320-331 153-164 (323)
153 1dow_A Alpha-catenin; four-hel 24.1 4.8E+02 0.016 25.0 12.5 128 317-450 71-202 (205)
154 3c3f_A Alpha/beta peptide with 23.9 1.5E+02 0.0053 21.2 5.0 23 157-179 6-28 (34)
155 1a93_B MAX protein, coiled coi 23.5 1.1E+02 0.0038 22.0 4.2 15 168-182 16-30 (34)
156 3m9b_A Proteasome-associated A 23.5 94 0.0032 31.1 5.3 34 161-194 56-89 (251)
157 1go4_E MAD1 (mitotic arrest de 23.0 3.7E+02 0.013 23.3 9.6 32 132-163 13-44 (100)
158 3qne_A Seryl-tRNA synthetase, 23.0 3.1E+02 0.011 29.7 9.6 49 146-194 41-92 (485)
159 1wle_A Seryl-tRNA synthetase; 22.9 4.2E+02 0.014 28.7 10.6 18 177-194 120-137 (501)
160 3qne_A Seryl-tRNA synthetase, 22.3 2.4E+02 0.0081 30.6 8.6 61 134-194 36-99 (485)
161 1ux5_A BNI1 protein; structura 21.9 5.9E+02 0.02 26.1 11.3 121 327-448 256-399 (411)
162 1m1j_B Fibrinogen beta chain; 21.7 5.6E+02 0.019 27.6 11.2 14 132-145 101-114 (464)
163 1zxa_A CGMP-dependent protein 21.4 1.4E+02 0.0048 24.3 5.0 32 134-165 14-45 (67)
164 3a7o_A Autophagy protein 16; c 21.2 1.8E+02 0.006 24.2 5.5 19 147-165 20-38 (75)
165 3o3m_A Alpha subunit 2-hydroxy 21.0 2.6E+02 0.009 28.8 8.4 43 363-419 159-201 (408)
166 2dq0_A Seryl-tRNA synthetase; 20.9 3.4E+02 0.012 28.8 9.4 51 144-194 37-90 (455)
167 2dq0_A Seryl-tRNA synthetase; 20.7 2.5E+02 0.0087 29.8 8.4 61 134-194 34-97 (455)
168 4b6x_A AVRRPS4, avirulence pro 20.6 2.3E+02 0.0078 24.1 6.2 55 131-194 22-76 (90)
169 1ik9_A DNA repair protein XRCC 20.4 5.2E+02 0.018 24.8 9.8 38 141-178 128-165 (213)
170 3s9g_A Protein hexim1; cyclin 20.4 4E+02 0.014 23.3 7.9 37 157-193 42-78 (104)
171 2xv5_A Lamin-A/C; structural p 20.2 3.6E+02 0.012 22.0 8.3 42 133-174 7-48 (74)
No 1
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.95 E-value=0.0061 Score=63.62 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred eecCCCC-CccccCccccccccC------CCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 008574 98 RSLNRPV-VEQFARPRRQRIVDA------NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAE 160 (561)
Q Consensus 98 ~~~~r~g-~~df~~r~~~~~~~~------~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkE 160 (561)
...||+| ||||..|++.+++.+ +..+|++.+ ++..+|.+|++.....+++++.++..+..+
T Consensus 302 ivl~~~~~Dpd~~~~~l~~~v~~l~d~l~~~~~~~~~~--~~~~e~~kklee~~~~r~e~~~~~~~~e~~ 369 (386)
T 2bnx_A 302 IVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSE--AKATELEKKLDSELTARHELQVEMKKMEND 369 (386)
T ss_dssp HHTCGGGCCCCTTCSCCCCCCTTTC-----CTHHHHHH--TTTCC-------------------------
T ss_pred HHhccCCCCCCcccccccchHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4578999 999998888888887 444455444 567888899999888888888777655544
No 2
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.53 E-value=0.91 Score=38.42 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=39.2
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE-------LEkENqeL~qQLsqAeaQIs 190 (561)
.-..|+.|++..-..|.-||.|+..|+.+...+...+++ +..||..|+++...-...|.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888877777788887777777777777666 44455555554444444443
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.68 E-value=1.5 Score=40.02 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
++++..+.-+..+.++..|+..++.++..++..++++++++.+|+.++..+..++..|++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555555555555555555555555555555543
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.55 E-value=2.5 Score=38.64 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
.+|++.++.....+.+|+.++..++.+++.+...+.++.+++..|+.++..++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443333
No 5
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.58 E-value=3.8 Score=34.67 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=54.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..+|+.-|+.+=..++-++.||...+..+-..+....+.+..|+.|..++..++.++..|+.
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999998888899999999999998888888889999999999999999988877653
No 6
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.39 E-value=8.5 Score=32.41 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=46.7
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
......+.+.+...+..+++|+.....+..|+..|..+..+.+.....|...-..++.++..+..
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778778888888888888888888877777666666666666666666666666654
No 7
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=83.09 E-value=7.4 Score=32.06 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=50.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+-+.||..+|....++|.+|..=+.+++..+.+....|..||.+++.++.-...++-..
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 45689999999999999999999999999999999999999999887777666665444
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.08 E-value=5.8 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFVKAQSLNA 169 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~Ne 169 (561)
.||.+|...++.+.++..+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhh
Confidence 455555555555555554433
No 9
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.95 E-value=11 Score=31.26 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=49.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
++.+||+..+..-++|+..|..+...++..+..-..+..|.+.+.+.++....++++|..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888888888888888877774
No 10
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.61 E-value=10 Score=33.55 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=17.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL 164 (561)
....+|..+++......-.|+.++..++...+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666555555555555555444444433
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.12 E-value=3 Score=45.74 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
.++|++..++|+.+|..-..+|..|++..
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888766667777777643
No 12
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.07 E-value=11 Score=35.14 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
++.+..|..-|+-++..++..+..|+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333
No 13
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.26 E-value=3.9 Score=34.39 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=50.2
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+...++.+||+..+..-++|+..|..+...++..+..-..+..|.+.+.+.++....++++|..
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4456778888888888888888888888888888888888888888888888888888877774
No 14
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.25 E-value=7 Score=32.84 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=5.7
Q ss_pred hhHHHHHHHHhh
Q 008574 208 KFKDVQKLIANK 219 (561)
Q Consensus 208 ~~KkIQklia~k 219 (561)
.+|.+...+++|
T Consensus 49 Elk~l~e~Ld~K 60 (79)
T 3cvf_A 49 EVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 344444544444
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.31 E-value=18 Score=38.45 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=36.5
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVF------------------ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELe------------------aLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL 192 (561)
.+...|++++...+..++.++.++. .+.++..++.++.+.++.+++.+++++.....++..+
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhH
Confidence 5556666666666666666665543 3344445555566666666666666665555555433
Q ss_pred h
Q 008574 193 S 193 (561)
Q Consensus 193 ~ 193 (561)
+
T Consensus 543 ~ 543 (597)
T 3oja_B 543 E 543 (597)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.09 E-value=10 Score=40.37 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008574 173 KQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 173 kENqeL~qQLsqAeaQI 189 (561)
+|..+++.++...+.++
T Consensus 544 ~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHH
Confidence 33333333333333333
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.25 E-value=14 Score=29.36 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
.++..+..+.+.|...|.+|+.+...|+.++..++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555444444444444443
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.87 E-value=19 Score=30.74 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=4.4
Q ss_pred HHHHHHHhhhh
Q 008574 183 VAAEAKIASLS 193 (561)
Q Consensus 183 sqAeaQIssL~ 193 (561)
..+++++.+|.
T Consensus 82 ~~AE~evasLn 92 (101)
T 3u59_A 82 TDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.73 E-value=31 Score=30.59 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHHHHHHhHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008574 134 KEFEEKLMLSE----NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (561)
Q Consensus 134 ~ELeeKLdlnE----nlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~~ 197 (561)
.++..|+.... +.+..||.++..++.+.+.+....-+||..|-.|...-.....-+.++.++-+
T Consensus 20 e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 20 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444333 34566777777777777777777777777777666665555555556665444
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=71.34 E-value=13 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=32.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsq 184 (561)
...++..|++..-+.+...++++..+++.++.+.-...+||.+...|+.++..
T Consensus 29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666667777777777777766665566666555544444433
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.95 E-value=17 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+.+||.-+.....|+.....+..+++.+..+...++..+..+|-.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444445555555555555555555555554443
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.55 E-value=28 Score=31.31 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHhHhHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSE-------VFA----LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsE-------Lea----LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
.=|+.+|.....-..+.+.+ +.. |.+|+.+-+.+..+|+.|++.|.++|..+.+++..|+..
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33555555554444444422 222 333333334446677777777777777777777666653
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.33 E-value=22 Score=34.34 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea 187 (561)
+.-++++|+....++..|+.|+..|..+++...+++..|+++.+.++++......
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3556888999999999999998888888876555555555555555555444333
No 24
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.24 E-value=28 Score=29.43 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=22.9
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
.+..+|.-++...+|++-+++.+|.+.+.|+..++.+...-+.|...|+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444445555555555555555555555444444444444444433333
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=67.34 E-value=34 Score=30.36 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=13.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVF 155 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELe 155 (561)
+...+|+.+.......+.+|+.+|.
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655555555555554444
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.09 E-value=34 Score=32.86 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~ 196 (561)
+..|+.++..++.+.+.+....-+||..|-.|.........-+..+.++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 44444555555555555555555555555555444444444444444433
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.01 E-value=16 Score=28.93 Aligned_cols=35 Identities=31% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.+...+.....+|+.+|..|..++..++.++..|.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666665554
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.78 E-value=42 Score=29.84 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=22.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL 164 (561)
...+|..+|...+.....-+.+|..++.|..+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777776666666666665553
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.66 E-value=17 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQ 188 (561)
+..|..+.+.+...|.+|..++..|+.++..++..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.48 E-value=60 Score=27.38 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
..|.-++.|++.|+..|..|..+++.+++....+..+...|+.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344556677777777777777777766666666666655553
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.30 E-value=9.8 Score=29.51 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
.++++|+.|+..|+...+.|..++.+|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444433
No 32
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.77 E-value=38 Score=25.39 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 145 nlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
+++.+|++|+..+..|.+.+...|-....-...|..++..++
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 456677777777777777666655444444444444443333
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.58 E-value=39 Score=35.18 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.....+.+.+++.++++.++++..++..++..+.+.+.++..
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 333444455555555555555566666666666666655543
No 34
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.96 E-value=73 Score=26.69 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLs 183 (561)
..|+..+.......-+|+.+|..++.|+..|.+.++++..+...+.++-.
T Consensus 9 ~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 9 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33443333333344566677777777777777777777666665544433
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.79 E-value=69 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008574 168 NAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 168 NeELEkENqeL~qQLsqA 185 (561)
..+++++...+..++..+
T Consensus 27 L~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 333333333333333333
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.48 E-value=57 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.....+......|+.+|..|..++..+..++..|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677777777777777777777766654
No 37
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.28 E-value=21 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 165 QSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 165 ~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.....+|+.||..|+.++..+..++..|.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.25 E-value=33 Score=30.36 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEkEN 175 (561)
...+.+|+..+..|..|++.+..++..||...
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555555555555555555555555433
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.45 E-value=64 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAE 160 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkE 160 (561)
..||+.++..-++.+..|+.++..|...
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444433
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.94 E-value=29 Score=27.26 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
+..|..+.+.|...|..|..+...|+.++..+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.77 E-value=46 Score=29.94 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENq 176 (561)
+++|+.||..|..++.......++|.++++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444444444443333333333333
No 42
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.64 E-value=25 Score=29.28 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 164 L~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+.....+|+.||..|+.+|..+..++..|..
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777766664
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.60 E-value=56 Score=38.60 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008574 154 VFALKAEFVKA 164 (561)
Q Consensus 154 LeaLkkElEkL 164 (561)
+..+.+|++.+
T Consensus 986 v~~L~~e~~~l 996 (1080)
T 2dfs_A 986 VLSLQEEIAKL 996 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.29 E-value=74 Score=30.94 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
.+|+.++..+...+..+.....+++.+...+..++......+.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.09 E-value=21 Score=29.23 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
|..++..+...+..+..||..|+.++..+..++..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445556666666666666555543
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.82 E-value=30 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 161 lEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
...|......|+.+|..|..++..+..++..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666666666666666654
No 47
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.77 E-value=50 Score=27.36 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=35.4
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqA 185 (561)
+....-|++.|...+..|.+|+..+.-..+..+.|-+..-.+.=||.-|++.+..+
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 45667788888888888888887766666666655444444444666555555443
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.75 E-value=45 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQL 182 (561)
.+|+.....+.....+|..+..-|+.||+-|+|.+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34444444444455555566666667777666654
No 49
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=53.69 E-value=53 Score=26.39 Aligned_cols=49 Identities=27% Similarity=0.230 Sum_probs=29.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
.+.-|+..-|...+.-+++|=.=-..+.+|+..++.....|+.||..|+
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4455666667777765655543334556666666666666666666554
No 50
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.02 E-value=80 Score=27.43 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
...+.+.|...+.....+..++..|..++..-...-...|.+...+.++|..+-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544444445555444444444333
No 51
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.91 E-value=1.4e+02 Score=27.58 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=28.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVF----ALK---AEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELe----aLk---kElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
...+|++-++...+...+.+.|++ .|. ..+++++.+|.-.++|...|+.++..+.
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 446677666666655555555544 222 2234455555555555555554444333
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.54 E-value=22 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..+..|..+.+.|...|.+|..++..|..++..++..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666666666655544
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.11 E-value=1.1e+02 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
-..+..+...|...|..|..++..|..++..++.-+.++.+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 33455555666666666777666777777777666655543
No 54
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.80 E-value=73 Score=34.56 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHHHHh
Q 008574 166 SLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (561)
Q Consensus 166 ~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQklia~ 218 (561)
+..++||+....|+..|..-...|..|++ +++.|-.+++++..-|+-
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~------~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQN------SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34567777777777666555566666664 344444445444444444
No 55
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.46 E-value=89 Score=24.45 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.....|......|+.+|..|..++..+..++..|..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667777777777777777776666654
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.01 E-value=1e+02 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.++........+.......|.+.++.+..++..+...+
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444
No 57
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.71 E-value=1.2e+02 Score=25.78 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQ 165 (561)
Q Consensus 152 sELeaLkkElEkL~ 165 (561)
.+|..+..|...+.
T Consensus 39 ~el~~le~E~~~L~ 52 (96)
T 3q8t_A 39 ENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.62 E-value=39 Score=35.47 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=9.3
Q ss_pred Hhhhhhhhhhhcc
Q 008574 513 LQGLHFAYRAHQF 525 (561)
Q Consensus 513 ~qgvrFAfRvhqf 525 (561)
+..+|||-||...
T Consensus 385 l~TL~fA~rv~~~ 397 (403)
T 4etp_A 385 LNSLRFASKVNST 397 (403)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhhc
Confidence 4578888888754
No 59
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=49.37 E-value=77 Score=29.42 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=27.7
Q ss_pred CCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008574 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (561)
Q Consensus 121 ~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElE 162 (561)
++.|++.-|.+...+|++.+...+..++.|+-+...+..|..
T Consensus 19 K~iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 19 RAVVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777666666655555444444
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.72 E-value=1.1e+02 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=31.9
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsq 184 (561)
.++.+|++++...+....+-+.+=..++.|+..+.+..+---.|..+|++.++.
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445666666666665555555555566666666666555555555566665554
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.72 E-value=65 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=10.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVK 163 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEk 163 (561)
|...|......+...+.+...+..|++.
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.82 E-value=27 Score=28.52 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=15.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeE 170 (561)
|...-+.|+.|+.++..+..|++.+..++..
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666555555554443333333
No 63
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.79 E-value=51 Score=34.54 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhh
Q 008574 476 KIKQAS-MKLAQMYMKRVTRELEL 498 (561)
Q Consensus 476 kiK~as-v~la~~ymkrv~~El~~ 498 (561)
++|++. +..+-.++.+|+.-|..
T Consensus 316 rl~E~~~INkSL~aLg~vI~aL~~ 339 (403)
T 4etp_A 316 RLRETQNINKSLSALGDVIHALGQ 339 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456543 45555666677777643
No 64
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=47.62 E-value=76 Score=29.53 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=36.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQ--------------SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQ--------------sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
.+..+|++.|....+-++.|+ .+|..|...+.....+.+..++..+.|+..+..++..+.
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667666665555555443 345555555565666666666666677766666666663
No 65
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.24 E-value=1.5e+02 Score=26.14 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=26.7
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~ 166 (561)
.....|.+++...+..+++|+.+...+..|+..+..
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888777777777666543
No 66
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.18 E-value=68 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
++.++..+..+|..|..-.+.-++++..++++|.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 67
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.11 E-value=49 Score=26.99 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=25.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (561)
Q Consensus 141 dlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsq 184 (561)
+-.+..+++|+.++..+..+...+...|..|..++..|..++..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666655543
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.85 E-value=1.5e+02 Score=26.17 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEk 173 (561)
+.+|+..+..|..|++.+..++..||.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444444444444444443
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.66 E-value=89 Score=30.36 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=8.4
Q ss_pred Chhhhhhhhhhccc
Q 008574 285 PSFAQLYHSLTKQV 298 (561)
Q Consensus 285 P~~veLy~sLk~K~ 298 (561)
|.+..+|..++++.
T Consensus 175 ~~lL~~Yerir~~~ 188 (256)
T 3na7_A 175 PKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 45666666666543
No 70
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.20 E-value=20 Score=35.94 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+..+..++..+..+|..|..+.+.++.++..++.|+..|.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355667777777777777777777788888888888766664
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.17 E-value=1e+02 Score=26.86 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008574 151 QSEVFALKAEFVKAQSLN 168 (561)
Q Consensus 151 QsELeaLkkElEkL~~~N 168 (561)
+.+|+.|..|.+.|..++
T Consensus 18 r~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.15 E-value=1.2e+02 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 148 KDLQSEVFALKAEFV 162 (561)
Q Consensus 148 kELQsELeaLkkElE 162 (561)
..|+.++..|+.+++
T Consensus 18 e~Lkreie~lk~ele 32 (120)
T 3i00_A 18 ERLYREISGLKAQLE 32 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 73
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.04 E-value=1.2e+02 Score=26.73 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=26.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkE 174 (561)
+++..|.++....+.++..|+.++..|+..++.......++-.+
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~ 47 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRE 47 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677776667666666666666666665544444444333
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.77 E-value=1.8e+02 Score=27.05 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 175 NKKLVEDLVAAEAKI 189 (561)
Q Consensus 175 NqeL~qQLsqAeaQI 189 (561)
++.++.++..+.-|+
T Consensus 98 ~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 98 TERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 75
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.77 E-value=80 Score=27.75 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 148 kELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..|-=+++.|+..++.+.+...++.+|+.+...++...+..+..|.
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~ 71 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666666666655555555555555554444
No 76
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.40 E-value=74 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
..+..|..+++.|...|..|..++..|++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 77
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=42.81 E-value=1.7e+02 Score=32.10 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+.++...++.++.+++++.+...|.....+....+++|...++.++...+..+.+-+.
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~Kr 419 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKR 419 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 33445555556666667777777777777777777777777777777777776655554
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.57 E-value=1.1e+02 Score=33.21 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 426 FGAALKKMASLLDKSERSIQRLVK 449 (561)
Q Consensus 426 ~~~al~km~~lldk~E~~~~~l~r 449 (561)
....+..+.++++.+...|.+|+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655544
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.97 E-value=66 Score=33.89 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=10.8
Q ss_pred HHhhhhhhhhhhcc
Q 008574 512 LLQGLHFAYRAHQF 525 (561)
Q Consensus 512 L~qgvrFAfRvhqf 525 (561)
=+..+|||-||.+.
T Consensus 369 Tl~TLrfA~rv~~i 382 (412)
T 3u06_A 369 SVKSLRFAASVNSC 382 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 45688999998765
No 80
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.82 E-value=1.8e+02 Score=25.65 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=16.8
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFA 156 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELea 156 (561)
|...+|..+...-...+.+|+.++..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677877777666666666544443
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.81 E-value=74 Score=28.39 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 008574 134 KEFEEKL 140 (561)
Q Consensus 134 ~ELeeKL 140 (561)
..|...+
T Consensus 18 e~Lkrei 24 (120)
T 3i00_A 18 ERLYREI 24 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.64 E-value=1.2e+02 Score=31.37 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=42.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 136 LeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+.+..+..++..+++|.|....+.+.+..+.+.+.+++|+..++..+..+..++.+..+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 44444555666677777777777777777778888888888888888777777765554
No 83
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=41.62 E-value=5.5 Score=41.44 Aligned_cols=18 Identities=17% Similarity=0.003 Sum_probs=2.9
Q ss_pred eecCCCC-CccccCccccc
Q 008574 98 RSLNRPV-VEQFARPRRQR 115 (561)
Q Consensus 98 ~~~~r~g-~~df~~r~~~~ 115 (561)
.+.||+| ||||.+||+++
T Consensus 364 ivl~~~g~dpd~~~~~~~~ 382 (383)
T 3eg5_B 364 IVLHKNGTDPDFKCRHLQI 382 (383)
T ss_dssp HHCC---------------
T ss_pred HHhccCCCCCCCCccCCCC
Confidence 6678899 99999998744
No 84
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.24 E-value=62 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=19.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEkEN 175 (561)
|...-..|+.|+.+...+..+++.+...+..|..+.
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666555444444444433
No 85
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.06 E-value=61 Score=26.80 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=26.2
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe 186 (561)
...+|+.-|.... .||......++.+..+..+.+.++++|+.++...+
T Consensus 20 ti~eLq~~L~~K~-------eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 20 SLRDLQYALQEKI-------EELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666665555 33334444444444555566666666666665543
No 86
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=40.98 E-value=2.2e+02 Score=26.26 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=31.2
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+.-.+.++.|++.-+-..+-+.+++++++..-.-+.....|..|+.-++..+..+...+
T Consensus 25 ~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 25 KQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44456666666666666666666666665554444444444444444444444333333
No 87
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.27 E-value=1.6e+02 Score=25.86 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhh
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEk----ENqeL~qQLsqAeaQIssL~s 194 (561)
...++.|+.|+..++.....|.....+++. +...++..+..++.++..++.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445567777777777766666666555554 444555566666666655553
No 88
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=39.02 E-value=2.1e+02 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~ 179 (561)
+..+...|...|+.|+.+...+.
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333333
No 89
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.63 E-value=87 Score=23.39 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..-+|.|.+.|+..+..++..+..|+
T Consensus 22 laaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666666666766666665443
No 90
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.23 E-value=71 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=30.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhh
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEk----ENqeL~qQLsqAeaQIssL~ 193 (561)
+......++.|+.|+..++.....|.....++|. +...++..+..++.++..++
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566667776666666666655555544 44455555666666665555
No 91
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.00 E-value=2.5e+02 Score=26.10 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=18.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
.+...|...|......+...+.+..++..|++.|.
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444555555555555544
No 92
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.92 E-value=1.8e+02 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 156 ALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 156 aLkkElEkL~~~NeELEkENqeL~qQLs 183 (561)
....++.....+|.+|+.|...|+.++.
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.68 E-value=60 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 160 EFVKAQSLNAELEKQNKKLVEDLVA 184 (561)
Q Consensus 160 ElEkL~~~NeELEkENqeL~qQLsq 184 (561)
+.+.|+..+.+|..++..|..++..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 94
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.60 E-value=1.6e+02 Score=25.03 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=18.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELE 172 (561)
+...-|.+-|+.|+.+ ..++.++..|+..+...|.+|.
T Consensus 28 ~Rr~AL~eaL~EN~~L----h~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 28 QRRKALYEALKENEKL----HKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666665543 3444444444444444444433
No 95
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.39 E-value=1.3e+02 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=12.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElE 162 (561)
..|+..+......+..++.++..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 36 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKIN 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444344444444444433333
No 96
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=37.22 E-value=1.4e+02 Score=35.38 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=17.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
+..++++++...+..+.+++.++..+..++..+.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444
No 97
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.15 E-value=1.7e+02 Score=24.46 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+.....-+-.+..+.+.|+.|+..|++++....-++..+..
T Consensus 15 ~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 15 SNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333444456666666777777777766666666655553
No 98
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.02 E-value=67 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 156 ALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 156 aLkkElEkL~~~NeELEkENqeL~q 180 (561)
+|...++.|...|.+|+.|+..|+.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445555666666666666665544
No 99
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.55 E-value=1.6e+02 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
...+..+...|...|..|+.++..|..++..+..-+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666667776666766666666444
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.42 E-value=74 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.++||+....|+..|..-...|..|+
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666666666555543333444444
No 101
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.70 E-value=93 Score=36.77 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=24.3
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENq 176 (561)
++..+|++++......+..++.++..+..++..+..+..+++.+..
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555544433
No 102
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.63 E-value=1.3e+02 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008574 155 FALKAEFVKAQSLNAELEKQNK 176 (561)
Q Consensus 155 eaLkkElEkL~~~NeELEkENq 176 (561)
..|+.|++.-......||.|..
T Consensus 20 shLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 20 SNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHhhhh
Confidence 3333333333333333333333
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.60 E-value=1.8e+02 Score=23.67 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..+..+...++.....+..++.+...|+..+..++.++
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444333
No 104
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.50 E-value=63 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=19.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELEk 173 (561)
|......|+.|+.+...+..|++.+..++..|..
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777666666666554444444443
No 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=35.47 E-value=2e+02 Score=24.26 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (561)
Q Consensus 149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIs 190 (561)
.++.++.....+..++......|.+.++.+..++..+..++.
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.44 E-value=2.2e+02 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=15.0
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEk 163 (561)
.++.|..+.|........++......|..++.+
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444433333333333
No 107
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.97 E-value=3.9e+02 Score=27.46 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=30.4
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE 170 (561)
-.+.-|+.+|......+.+++.++...+.+++.+......
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888876655443
No 108
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.53 E-value=86 Score=25.48 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.-+..|+..+..++.+...|..+...++.++..|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556666666666666666777776666554
No 109
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.42 E-value=84 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 158 kkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
..|+..+.++..++++++++++.++..+++++
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444443
No 110
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.32 E-value=1.6e+02 Score=22.74 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 163 KAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 163 kL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+..++..|...|.+|..-+..+..+|..|..
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555544443
No 111
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=34.28 E-value=8.4 Score=39.24 Aligned_cols=8 Identities=25% Similarity=0.139 Sum_probs=3.4
Q ss_pred HhHHHHHH
Q 008574 533 TLCAFEEI 540 (561)
Q Consensus 533 t~~afeEl 540 (561)
+..+|+++
T Consensus 337 A~~~~~~l 344 (382)
T 2h6f_A 337 ALELCEIL 344 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 112
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.98 E-value=2.1e+02 Score=23.94 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..++..++..+.+.+.|++.+....++|..=.+.|..-+..++.+..++.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455666666666677777776666666655556555555555555544
No 113
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.42 E-value=1.5e+02 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 158 kkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
++.+..+...|-+||+.-+.|+.-+..+..+|..|+
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 344444445555556555555555555555555554
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.31 E-value=1.1e+02 Score=23.19 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 150 LQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
|+.++..+++..-++....+-||+-...|+.++..++.++.+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566655555555566777777777778777777744
No 115
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.98 E-value=2.1e+02 Score=37.94 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+++++.+|..++.+.+++..+.+.|+.+....+..+..|+.=|..|.+
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444444444444444444555544444455555544444443
No 116
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=32.61 E-value=68 Score=31.42 Aligned_cols=34 Identities=32% Similarity=0.318 Sum_probs=25.5
Q ss_pred hhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHh
Q 008574 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA 355 (561)
Q Consensus 318 ~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~ 355 (561)
.+.+=.||.+|++|+..||+.+. .|..|-++|+.
T Consensus 107 LSrIPdEI~dR~~FL~tIKeIAs----aIKklLDAvn~ 140 (213)
T 3ajm_A 107 LSKIPDEINDRVRFLQTIKDIAS----AIKELLDTVNN 140 (213)
T ss_dssp HHTHHHHTTCHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhCchhhcchHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 47888999999999999987654 45555555554
No 117
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=32.32 E-value=1e+02 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=15.4
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLk 158 (561)
.....+|+.|+.-.+..+.+|...+....
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq 41 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADAR 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655554444444333
No 118
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.94 E-value=1.6e+02 Score=22.17 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
.++..++.+++.+....+.+..+....+..+..++.++
T Consensus 19 ~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 19 EKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333344444443333
No 119
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.82 E-value=71 Score=25.27 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 158 kkElEkL~~~NeELEkENqeL~qQLsqAeaQI 189 (561)
+..+..|......|+.+|..|..++..+..++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777776666655
No 120
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=31.80 E-value=58 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008574 170 ELEKQNKKLVEDLVAAEAK 188 (561)
Q Consensus 170 ELEkENqeL~qQLsqAeaQ 188 (561)
..|.||-+|.+++.+++-+
T Consensus 12 qaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 12 QAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHh
Confidence 3444555555555555544
No 121
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.12 E-value=94 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008574 169 AELEKQNKKLVEDLVAAEAKI 189 (561)
Q Consensus 169 eELEkENqeL~qQLsqAeaQI 189 (561)
+.|..|+..+..+++..+..+
T Consensus 65 ~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 65 EQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444333
No 122
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.01 E-value=1.1e+02 Score=31.43 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLk 158 (561)
..|.+++..-+..+.....++..|+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~ 32 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELS 32 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 4444444444444444334443333
No 123
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.98 E-value=72 Score=22.26 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~q 180 (561)
+.+|.+|+.+....|-.||.|..+|.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555555555556666666665544
No 124
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.54 E-value=1.6e+02 Score=24.48 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIss 191 (561)
.+|++|+...++...-||+.+..|..|... -.++|++.+..++.++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s----------sQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES----------MQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcc
Confidence 456777777776666666666665555443 233455556666655543
No 125
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.41 E-value=1.8e+02 Score=24.57 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008574 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (561)
Q Consensus 152 sELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~ 195 (561)
...+.|.+|+..|.-...++|.|..+....+..-+++|+.|+..
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445555556666666666666555555566666666655543
No 126
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.68 E-value=3.4e+02 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 165 QSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 165 ~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
..+|..|+.+..+-..-+..+..|+..|+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333444444444444444
No 127
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.67 E-value=3.4e+02 Score=25.13 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 008574 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQ-------SLNAELEKQNKKLVEDLVAAE 186 (561)
Q Consensus 137 eeKLdlnEnlikELQsELeaLkkElEkL~-------~~NeELEkENqeL~qQLsqAe 186 (561)
+++++..+.-+.+|+.++......+..+. ++-+.++.+...|..++..++
T Consensus 34 EERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 34 EERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666655444333333222 223334445555555444443
No 128
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.54 E-value=1.4e+02 Score=24.52 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=3.2
Q ss_pred HHHHHHhH
Q 008574 135 EFEEKLML 142 (561)
Q Consensus 135 ELeeKLdl 142 (561)
+|+++|..
T Consensus 11 ~le~Ri~~ 18 (78)
T 3efg_A 11 ELEARLVE 18 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 129
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.48 E-value=4.2e+02 Score=28.04 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred Ccccc--CccccccccCCCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 008574 105 VEQFA--RPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ----------------- 165 (561)
Q Consensus 105 ~~df~--~r~~~~~~~~~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~----------------- 165 (561)
||+|+ ||- .+.=.+--...+..++.....++.+-.|+..+..+...+.
T Consensus 12 ~~~~G~~CPT-------------~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~ 78 (409)
T 1m1j_C 12 DERFGSYCPT-------------TCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQS 78 (409)
T ss_dssp CGGGCCEEEC-------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSC
T ss_pred CcccCCcCCC-------------cccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCc
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCChhhHHHHHHHHhhhh
Q 008574 166 -----SLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLE 221 (561)
Q Consensus 166 -----~~NeELEkENqeL~qQLsqAeaQIssL~s~~~e~~~~e~qs~~~KkIQklia~kLE 221 (561)
+...++..+..+|+..+.....+|..|+..... .-.+|+.|-....+
T Consensus 79 ~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~---------~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 79 IEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM---------NSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---------hHHHHHHHHHHHHH
No 130
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.16 E-value=56 Score=25.20 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 164 AQSLNAELEKQNKKLVEDLVAAEA 187 (561)
Q Consensus 164 L~~~NeELEkENqeL~qQLsqAea 187 (561)
|......|+.||..|..++..+..
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555443
No 131
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.66 E-value=43 Score=27.96 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 153 EVFALKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 153 ELeaLkkElEkL~~~NeELEkENqeL~ 179 (561)
|++-|+..+..|+.++.+||.||.-|+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777766443
No 132
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.60 E-value=1.1e+02 Score=33.82 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=4.4
Q ss_pred Ccccc--Cc
Q 008574 105 VEQFA--RP 111 (561)
Q Consensus 105 ~~df~--~r 111 (561)
|+|.+ |+
T Consensus 38 DeDwGvkCP 46 (562)
T 3ghg_A 38 DEDWNYKCP 46 (562)
T ss_dssp SSSBTTEEE
T ss_pred ccccCCCCC
Confidence 66665 65
No 133
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.50 E-value=1.4e+02 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 008574 168 NAELEKQNKKLVEDLVAAEAKIASL 192 (561)
Q Consensus 168 NeELEkENqeL~qQLsqAeaQIssL 192 (561)
..+||.++..|..++..+..+...+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555433
No 134
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.45 E-value=1.2e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 156 ALKAEFVKAQSLNAELEKQNKKLVED 181 (561)
Q Consensus 156 aLkkElEkL~~~NeELEkENqeL~qQ 181 (561)
+|...+++|...+.+|+.|...|+.-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444455555555555555544443
No 135
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.27 E-value=2.4e+02 Score=30.45 Aligned_cols=13 Identities=31% Similarity=0.100 Sum_probs=8.1
Q ss_pred chHHhHHHHHHHH
Q 008574 530 DSETLCAFEEIRQ 542 (561)
Q Consensus 530 D~~t~~afeElr~ 542 (561)
=++++.|+=|--+
T Consensus 440 v~R~l~alLEn~q 452 (501)
T 1wle_A 440 VPRLLIALLESYQ 452 (501)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHhCC
Confidence 3567777766544
No 136
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.24 E-value=3.4e+02 Score=25.47 Aligned_cols=34 Identities=6% Similarity=0.013 Sum_probs=21.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~ 166 (561)
+.++++-.+.......+|+.++.+++.|+..+..
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555566777777777777777663
No 137
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=27.88 E-value=4.6e+02 Score=27.78 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhhhhcccccCCCccc
Q 008574 429 ALKKMASLLDKSERSIQRL----VKLRNSVMHSYKDCKIPVDW 467 (561)
Q Consensus 429 al~km~~lldk~E~~~~~l----~r~r~~~~~ryk~~~Ip~~w 467 (561)
..+||..++.+....++++ .+.|..-...|-+| ||.|.
T Consensus 351 ~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~G~y-LP~di 392 (413)
T 4hpq_C 351 TAAKLSQILKSCETQLEQINTADLRERQMFLLENGNY-LPETI 392 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-SCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CChhh
Confidence 4566777776666666554 33445445555444 77664
No 138
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.67 E-value=1.7e+02 Score=38.84 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.6
Q ss_pred hhhccCCCC
Q 008574 521 RAHQFVGGL 529 (561)
Q Consensus 521 RvhqfAGG~ 529 (561)
++|+.+=|.
T Consensus 2671 ~~~~iSLGq 2679 (3245)
T 3vkg_A 2671 QYKSFAIGS 2679 (3245)
T ss_dssp CCCCCBTTS
T ss_pred CcEEEECCC
Confidence 334444443
No 139
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.42 E-value=2e+02 Score=21.76 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=15.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008574 135 EFEEKLMLSENLVKDLQSEVFALKAEFV 162 (561)
Q Consensus 135 ELeeKLdlnEnlikELQsELeaLkkElE 162 (561)
++++|++.-++...-||..+..+..|.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555555555544443
No 140
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.95 E-value=4.1e+02 Score=25.09 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 008574 133 KKEFEEKL 140 (561)
Q Consensus 133 k~ELeeKL 140 (561)
..|+.++|
T Consensus 15 L~E~n~kL 22 (168)
T 3o0z_A 15 LEEANDLL 22 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 141
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.30 E-value=55 Score=29.07 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred ccccccchHhHHHHHHHHhHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 123 KIEDGLMDKKKKEFEEKLMLSENLVKDLQ-----------SEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (561)
Q Consensus 123 ~Ved~~~~Kkk~ELeeKLdlnEnlikELQ-----------sELeaLkkElEkL~~~NeELEkENqeL~qQLs 183 (561)
+.+++- +...+|...+..++....+|+ .++..|...-+.++.....|+.+|..|.+.+.
T Consensus 39 k~E~~k--~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 39 SSEDSS--HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
No 142
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.29 E-value=1.1e+02 Score=22.15 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~q 180 (561)
|..+++++...+.+|+.|...|+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444443
No 143
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.25 E-value=89 Score=22.33 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 156 ALKAEFVKAQSLNAELEKQNKKLVE 180 (561)
Q Consensus 156 aLkkElEkL~~~NeELEkENqeL~q 180 (561)
+|...++.|...|.+|+.|...|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555566655554443
No 144
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.82 E-value=1.4e+02 Score=21.36 Aligned_cols=23 Identities=9% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~ 179 (561)
|...++.+...|.+||.|...|+
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444445555555555544443
No 145
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.73 E-value=1.5e+02 Score=28.59 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
+..|..|+..|.++++..+.|++.|+.+++.++.++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4566666666666666666666666666666666664333
No 146
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.71 E-value=4.7e+02 Score=27.72 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=55.7
Q ss_pred hhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhccccCHHHHH-HHHHhHHHHhhhhhhhHHHHhhcCCchhhHHH
Q 008574 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLL-EFVDWLDKELSSLADERAVLKHFKWPEKKADA 397 (561)
Q Consensus 319 ~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~~~di~~v~-~fv~wld~~L~~L~DEraVL~~F~wPe~K~da 397 (561)
..-|.+|.|+-.++.+--.++-.+...|..+-+.... +..|.+.+. .|-..|+.....| -+-|-.+ +| -+..
T Consensus 66 ~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~-q~~dndn~~~e~s~eLe~~i~~l--k~~V~~q--~~--~ir~ 138 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA-KANNNDNTFKQINEDLRSRIEIL--RRKVIEQ--VQ--RINL 138 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHH--HHHHHHH--hH--HHHH
Confidence 4678888888888888777777776666665554443 445555554 6666666655554 2223223 33 4555
Q ss_pred HHHH-HhhhhhhhhHHHhh
Q 008574 398 MREA-AVEYRDLKQLENEI 415 (561)
Q Consensus 398 lReA-a~~Y~~L~~l~~e~ 415 (561)
||-- ...+.++++||..|
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544 44577788888888
No 147
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.58 E-value=2.2e+02 Score=27.78 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=19.1
Q ss_pred hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (561)
Q Consensus 130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELE 172 (561)
.+...-|.+-|+.|+.+. .+|.++..|+..+...|.+|.
T Consensus 104 E~RR~AL~eaLeEN~~Lh----~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLH----KEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443 444445555554444444443
No 148
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=25.14 E-value=2.5e+02 Score=22.08 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=24.7
Q ss_pred chHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 129 ~~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
+.+-..+|++++..-++++-.+..++..+..+++.+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~ 40 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSI 40 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3466678888887777777666666666666665543
No 149
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=24.91 E-value=1.7e+02 Score=25.18 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 008574 149 DLQSEVFALKAEFV 162 (561)
Q Consensus 149 ELQsELeaLkkElE 162 (561)
+|..||..|..|+.
T Consensus 56 dLNDEINkL~rEK~ 69 (92)
T 1x4t_A 56 DLNDEINKLLREKG 69 (92)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 150
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.72 E-value=3e+02 Score=22.84 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL-------NAELEKQNKKLVEDLVAA 185 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~-------NeELEkENqeL~qQLsqA 185 (561)
.+|..+++........+..|+..++...+.+... ...+|.+...|+..++.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5677777777766666666666655554443322 333444444454444433
No 151
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.40 E-value=3e+02 Score=22.78 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+..++..+.........+...+..+..+...|..++..++..+..|..
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~ 70 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333334443333333344444555555555555555555555544444
No 152
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.13 E-value=1.6e+02 Score=30.24 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=4.9
Q ss_pred hhHHHHhcchhh
Q 008574 320 SIVGEIQNRSAH 331 (561)
Q Consensus 320 ~~i~Ei~nRSa~ 331 (561)
+-|--|++.-.|
T Consensus 153 e~ih~LT~~~~~ 164 (323)
T 1lwu_C 153 EKIHLLTGQQAY 164 (323)
T ss_dssp HHHHHHHTTSCE
T ss_pred cceeccccCCCe
Confidence 344444443333
No 153
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=24.07 E-value=4.8e+02 Score=24.98 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=75.3
Q ss_pred hhhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHhcc-ccCHHHHHHHHHhHHH---HhhhhhhhHHHHhhcCCch
Q 008574 317 AHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAA-YTNIEDLLEFVDWLDK---ELSSLADERAVLKHFKWPE 392 (561)
Q Consensus 317 a~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~~~-~~di~~v~~fv~wld~---~L~~L~DEraVL~~F~wPe 392 (561)
+.+.++.-.+. =-+.+=..||.+-....+.+.+-+..+. -.++++++.|++.+-. +|..|+..||- -..+|.
T Consensus 71 aaR~lLs~vtr--lLllaD~~~Vrkil~~~~~v~~~L~~le~~~s~~el~~~f~~f~~~m~~l~~l~~~Rq~--dLk~~~ 146 (205)
T 1dow_A 71 AARALLSAVTR--LLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQ--ELKDVG 146 (205)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhcCHH
Confidence 34455544443 1222223456655555555555555544 5699999999988876 45566666553 125677
Q ss_pred hhHHHHHHHHhhhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 393 KKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKL 450 (561)
Q Consensus 393 ~K~dalReAa~~Y~~L~~l~~e~s~~~d~p~~p~~~al~km~~lldk~E~~~~~l~r~ 450 (561)
++.+-.+.-+.+-...--|.+-.+.|--.|. |++|-.--.-.+.++...++.+++.
T Consensus 147 ~rd~l~aAr~~Lk~~sp~L~ta~k~~lrhp~--~~~a~~nRd~v~~qm~~al~~I~~v 202 (205)
T 1dow_A 147 NRDQMAAARGILQKNVPILYTASQACLQHPD--VAAYKANRDLIYKQLQQAVTGISNA 202 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554444443334445666666655674 6666666666777777777666553
No 154
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.95 E-value=1.5e+02 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLV 179 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~ 179 (561)
|...++.+...+.+|+.|...|+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444455555555544443
No 155
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.54 E-value=1.1e+02 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008574 168 NAELEKQNKKLVEDL 182 (561)
Q Consensus 168 NeELEkENqeL~qQL 182 (561)
.++++++|..|+.|+
T Consensus 16 IddlkrQN~~Le~Qi 30 (34)
T 1a93_B 16 IDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 156
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.46 E-value=94 Score=31.13 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 161 lEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
+..+..++..|...|.+|...+..++.++..|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666677777777777766664
No 157
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.99 E-value=3.7e+02 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=15.7
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008574 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (561)
Q Consensus 132 kk~ELeeKLdlnEnlikELQsELeaLkkElEk 163 (561)
....|.++++.-+.....|+.++..|..+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554555555554444444443
No 158
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.98 E-value=3.1e+02 Score=29.67 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELEk---ENqeL~qQLsqAeaQIssL~s 194 (561)
.+++++.+++.|+.+...+..+...+.+ +...|..++..++.++..|+.
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444443333221 123344445555555544443
No 159
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.91 E-value=4.2e+02 Score=28.66 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 008574 177 KLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 177 eL~qQLsqAeaQIssL~s 194 (561)
.|..++..+..++..++.
T Consensus 120 ~l~~~~~~l~~~i~~l~~ 137 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYP 137 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.32 E-value=2.4e+02 Score=30.58 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=33.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~---NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+|-++.-......++|+.+...+.+++.+++.. .+++..+.+.|..++..++.++..++.
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555544444444443322 345666677777777777777766664
No 161
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=21.89 E-value=5.9e+02 Score=26.13 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHhhhhhhHHHHHHHH---HhccccCHHHHHHHHHhHHHHhhhhhhhHHHH--h---hcCCchhh----
Q 008574 327 NRSAHLLAIKADIETKGGFINSLIQKV---LAAAYTNIEDLLEFVDWLDKELSSLADERAVL--K---HFKWPEKK---- 394 (561)
Q Consensus 327 nRSa~l~aIk~DVe~~~~~I~~L~~~i---~~~~~~di~~v~~fv~wld~~L~~L~DEraVL--~---~F~wPe~K---- 394 (561)
|+.+.+.-|..-|+.+.+-+..+..++ ..+.-.++++|..-+.-|...|..+-.|-..- . .|+ |..+
T Consensus 256 ~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~-~~d~f~~~ 334 (411)
T 1ux5_A 256 NSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFH-PLDKVLIK 334 (411)
T ss_dssp SCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSC-TTCCHHHH
T ss_pred CCccHHHHHHHHHHHhCcccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccC-cccHHHHH
Confidence 566666666666776655554454444 44567889999988888887777765553321 1 110 2221
Q ss_pred -HHHHHHHHhhhhhhhhHH-------Hh-hhcccCCCC--CchHHHHHHHHHHHHHHHHHHHHHH
Q 008574 395 -ADAMREAAVEYRDLKQLE-------NE-ISSYRDDTN--VPFGAALKKMASLLDKSERSIQRLV 448 (561)
Q Consensus 395 -~dalReAa~~Y~~L~~l~-------~e-~s~~~d~p~--~p~~~al~km~~lldk~E~~~~~l~ 448 (561)
.+-+..|...+..|.... .+ +.-|..||. .+.+.-...+..++....+.....+
T Consensus 335 ~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~ 399 (411)
T 1ux5_A 335 TLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNL 399 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333222 22 234666775 2555666666666666666554443
No 162
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.74 E-value=5.6e+02 Score=27.63 Aligned_cols=14 Identities=0% Similarity=0.211 Sum_probs=7.2
Q ss_pred hHHHHHHHHhHhHH
Q 008574 132 KKKEFEEKLMLSEN 145 (561)
Q Consensus 132 kk~ELeeKLdlnEn 145 (561)
...+|+.+|+..++
T Consensus 101 ~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 101 VLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34566666654443
No 163
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.38 E-value=1.4e+02 Score=24.30 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=15.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~ 165 (561)
++|.+.+......+.+|+.++.....|+..|.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666655555555544433
No 164
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.24 E-value=1.8e+02 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008574 147 VKDLQSEVFALKAEFVKAQ 165 (561)
Q Consensus 147 ikELQsELeaLkkElEkL~ 165 (561)
+..|+.++.....|...|.
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~ 38 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLK 38 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444433
No 165
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=20.95 E-value=2.6e+02 Score=28.81 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=28.8
Q ss_pred HHHHHHHhHHHHhhhhhhhHHHHhhcCCchhhHHHHHHHHhhhhhhhhHHHhhhccc
Q 008574 363 DLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYR 419 (561)
Q Consensus 363 ~v~~fv~wld~~L~~L~DEraVL~~F~wPe~K~dalReAa~~Y~~L~~l~~e~s~~~ 419 (561)
+|..|.++||...+.=.|+ |.||+|-..|.+..++..++....
T Consensus 159 el~~l~~~LE~~tG~ki~~--------------e~L~eai~~~N~~r~~~~~~~~l~ 201 (408)
T 3o3m_A 159 QFEEAIKQLEIISGKKFDP--------------KKFEEVMKISAENGRLWKYSMSLP 201 (408)
T ss_dssp HHHHHHHHHHHHHTCCCCH--------------HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHCCCCCH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666555543332 678888888888888887777664
No 166
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.92 E-value=3.4e+02 Score=28.82 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhh
Q 008574 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 144 EnlikELQsELeaLkkElEkL~~~NeELEk---ENqeL~qQLsqAeaQIssL~s 194 (561)
...+++++.+++.++.+...+.++...+.+ +...|..++..+..++..++.
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444333211 223444445555555544443
No 167
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.73 E-value=2.5e+02 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS---LNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~---~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+|-++.-.......+|+.+-..+.+++.+++. ...++..+.+.+..++..++.++..+..
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444443322 1345555666666666666666665553
No 168
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.61 E-value=2.3e+02 Score=24.07 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=31.6
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.+..+|.+.++-....++.|..||.....|-.. .|..+-.++|.++.+.+.+|..
T Consensus 22 G~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp---------aeIA~~~~~L~qAraDL~~l~r 76 (90)
T 4b6x_A 22 GAGAALRQEIEDKQLMVNNLTDELQDAIDEANP---------AEIANTSQQLRHARADLADLQR 76 (90)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHccCH---------HHHHhHHHHHHHHHHHHHHHHH
Confidence 456788888877776777666666544433221 1223333455666666655554
No 169
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.40 E-value=5.2e+02 Score=24.82 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (561)
Q Consensus 141 dlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL 178 (561)
+-.-....+++.++..+..+.+.+.....++..+..++
T Consensus 128 d~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 128 AYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555555555555544444444443333
No 170
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.35 E-value=4e+02 Score=23.31 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 157 LkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
|.+.++.+...+..|.........++..+..+|..|.
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333444443333
No 171
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.18 E-value=3.6e+02 Score=22.01 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (561)
Q Consensus 133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkE 174 (561)
..+++..+..-+....+++.++.....|...|+..+-.|+.|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
Done!