Query 008574
Match_columns 561
No_of_seqs 231 out of 281
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 53.7 9.2 0.00067 29.6 5.2 37 139-175 46-82 (88)
2 d1k4ta1 a.2.8.1 (A:641-712) Eu 49.3 53 0.0038 25.3 10.0 32 131-162 2-33 (72)
3 d1seta1 a.2.7.1 (A:1-110) Sery 41.8 42 0.003 26.5 7.7 49 146-194 36-85 (110)
4 d1nkpb_ a.38.1.1 (B:) Max prot 36.2 16 0.0012 27.8 4.0 33 140-172 42-74 (83)
5 d1ou5a1 a.173.1.1 (A:151-354) 35.4 9.8 0.00071 33.6 2.9 32 511-542 18-49 (204)
6 d1seta1 a.2.7.1 (A:1-110) Sery 33.3 1E+02 0.0075 24.0 9.0 26 169-194 67-92 (110)
7 d2gtsa1 a.25.5.1 (A:4-80) Hypo 31.0 36 0.0026 25.8 5.1 30 359-388 3-33 (77)
8 d1t01a2 a.24.9.1 (A:126-252) V 29.8 1.4E+02 0.01 24.6 12.8 111 337-450 4-122 (127)
9 d1nlwa_ a.38.1.1 (A:) Mad prot 28.1 48 0.0035 24.7 5.5 35 139-173 41-75 (79)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 26.7 66 0.0048 24.4 6.2 35 159-193 52-86 (88)
11 d1nkpb_ a.38.1.1 (B:) Max prot 22.4 89 0.0065 23.3 6.2 35 159-193 47-81 (83)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.68 E-value=9.2 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=20.8
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~NeELEkEN 175 (561)
-|......|+.|+.++..+..+++.+...++.|..+.
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666676666666666555554444444433
No 2
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.35 E-value=53 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008574 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (561)
Q Consensus 131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElE 162 (561)
+....|+++|+.....+.+.+.|+..++.+..
T Consensus 2 KsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k 33 (72)
T d1k4ta1 2 KSMMNLQTKIDAKKEQLADARRDLKSAKADAK 33 (72)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999888888888887776655
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=41.84 E-value=42 Score=26.50 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh
Q 008574 146 LVKDLQSEVFALKAEFVKAQSLNAELE-KQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 146 likELQsELeaLkkElEkL~~~NeELE-kENqeL~qQLsqAeaQIssL~s 194 (561)
.+.+++.+++.++.+...+........ .+...+.+++..+..++..++.
T Consensus 36 ~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~ 85 (110)
T d1seta1 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE 85 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332221111 1222344444444444444443
No 4
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.17 E-value=16 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=16.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (561)
Q Consensus 140 LdlnEnlikELQsELeaLkkElEkL~~~NeELE 172 (561)
|...-+.|+.|+.++..+..+++.+...+..|.
T Consensus 42 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 74 (83)
T d1nkpb_ 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666665555555554443333333
No 5
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=35.44 E-value=9.8 Score=33.61 Aligned_cols=32 Identities=31% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHhhhhhhhhhhccCCCCchHHhHHHHHHHH
Q 008574 511 LLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQ 542 (561)
Q Consensus 511 lL~qgvrFAfRvhqfAGG~D~~t~~afeElr~ 542 (561)
-++++||||-|.......+|.+|++|+.+...
T Consensus 18 RILR~~RF~~~~~~~~f~id~~t~~ai~~~~~ 49 (204)
T d1ou5a1 18 RILRYFRFYGRIVDKPGDHDPETLEAIAENAK 49 (204)
T ss_dssp HHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 57899999999877777899999999877543
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=33.34 E-value=1e+02 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574 169 AELEKQNKKLVEDLVAAEAKIASLSS 194 (561)
Q Consensus 169 eELEkENqeL~qQLsqAeaQIssL~s 194 (561)
.++..+...|..++..++.++..+..
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~ 92 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEA 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556555555555543
No 7
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=31.00 E-value=36 Score=25.84 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHhHHHHhhhhhhhHHHH-hhc
Q 008574 359 TNIEDLLEFVDWLDKELSSLADERAVL-KHF 388 (561)
Q Consensus 359 ~di~~v~~fv~wld~~L~~L~DEraVL-~~F 388 (561)
-|-++|..||.+|+.--+-|-||---| .||
T Consensus 3 mdteevr~fv~hlerfkellndevngls~hf 33 (77)
T d2gtsa1 3 MDTEEVREFVGHLERFKELLREEVNSLSNHF 33 (77)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 367899999999998777788884433 344
No 8
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=29.82 E-value=1.4e+02 Score=24.56 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=71.9
Q ss_pred HHHhhhhhhHHHHHHHHHhcc-ccCHHHHHHHHHhHHHHh---hhhhhhHHH-HhhcCCchhhHHHHHHHHhhhhhhhhH
Q 008574 337 ADIETKGGFINSLIQKVLAAA-YTNIEDLLEFVDWLDKEL---SSLADERAV-LKHFKWPEKKADAMREAAVEYRDLKQL 411 (561)
Q Consensus 337 ~DVe~~~~~I~~L~~~i~~~~-~~di~~v~~fv~wld~~L---~~L~DEraV-L~~F~wPe~K~dalReAa~~Y~~L~~l 411 (561)
.||.+-....+.+..-+..+. ..+++|++.|++.+-..+ ..+++.||- |+ =|..+.+-.+.=+.+=.-.--|
T Consensus 4 ~eVrkIl~~~~~V~~~L~~~e~v~s~~dLv~~~k~f~~~m~~L~~~~~~Rq~dL~---~~~~Rd~L~~ar~~Lk~~sp~L 80 (127)
T d1t01a2 4 AEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT---HQEHRVMLVNSMNTVKELLPVL 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHBS---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhHHH
Confidence 567766666666666666554 689999999999988654 445555553 33 3566655555444444444455
Q ss_pred HHhhhcccC--CC-CCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 008574 412 ENEISSYRD--DT-NVPFGAALKKMASLLDKSERSIQRLVKL 450 (561)
Q Consensus 412 ~~e~s~~~d--~p-~~p~~~al~km~~lldk~E~~~~~l~r~ 450 (561)
.+-.+.|-- ++ ..-|++|..--..++.++...++.++|.
T Consensus 81 ~ts~K~~v~~~~~~~~~~~eA~~NRd~v~~qm~~ai~~Ii~v 122 (127)
T d1t01a2 81 ISAMKIFVTTKNTKSQGIEEALKNRNFTVEKMSAEINEIIRV 122 (127)
T ss_dssp HHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccccHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 666666632 22 2237888888888888888888877664
No 9
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.06 E-value=48 Score=24.75 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=21.8
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (561)
Q Consensus 139 KLdlnEnlikELQsELeaLkkElEkL~~~NeELEk 173 (561)
-|...-+.|+.|+.++..+..+.+.+..++..|..
T Consensus 41 iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777776666655555544443
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.73 E-value=66 Score=24.39 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.-+..|+..+.+++.+...|..+...+..++..|.
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555555555555544
No 11
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.37 E-value=89 Score=23.32 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (561)
Q Consensus 159 kElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~ 193 (561)
.-+..|+..+..++.+...|..+...+..++..|.
T Consensus 47 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555666666666666666666666666554
Done!