BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008575
(561 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297746379|emb|CBI16435.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/556 (89%), Positives = 529/556 (95%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+PKK KSK+ + P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES
Sbjct: 12 EPKKTKSKTARKPKENPLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VEITIEEIGKSKFNSMIGLVDRER+D +LYDD+ET KARE+RLAKEAR QELQA
Sbjct: 72 ISELPEVEITIEEIGKSKFNSMIGLVDRERIDEELYDDFETAKAREKRLAKEARTQELQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVKEP A+KG KGRGEASFYRVTCKDNG+GMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKVKEPQASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+ ++ISFC+LDIDIHRNIPH+HLHEKR+N
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQSYISFCRLDIDIHRNIPHIHLHEKRDN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K+RW GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS+ ++KNVTIRF+RR
Sbjct: 252 KERWCGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTSDKNVTIRFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TD+MPPVP ETK+HPS+VDLLLIK LI+ETSK LLQFLQHEFVNIGKS AERLIGEMGP
Sbjct: 312 TDIMPPVPAETKYHPSAVDLLLIKRLISETSKENLLQFLQHEFVNIGKSYAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+FSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 DFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPF+VEAGVS+GGKDVKQGLNIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 432 SGSAQVFEGHPFMVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWN 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAVKS+IQQCCIQLKSKIV+
Sbjct: 492 SYKINQAQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKSSIQQCCIQLKSKIVK 551
Query: 546 KIQDREQQERKRNLSR 561
KIQ R QQERKRNLS+
Sbjct: 552 KIQARVQQERKRNLSK 567
>gi|357454399|ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
Length = 671
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/556 (89%), Positives = 522/556 (93%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK KSK+P+ P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAES
Sbjct: 10 ESKKSKSKTPRKPKETVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAES 69
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELPVVEITIEEI KSKFNSMIGLVDRERVD LYDD+ET KARE+RLAKEARAQELQA
Sbjct: 70 ISELPVVEITIEEIIKSKFNSMIGLVDRERVDAALYDDFETAKAREKRLAKEARAQELQA 129
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVK+ A+KG KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 130 KNAALGKKVKDTPASKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 189
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+ N+ISFC+LDIDIH+NIPHVHLHEKREN
Sbjct: 190 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKKQNYISFCRLDIDIHKNIPHVHLHEKREN 249
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQF FKFVS+ +KNVT+RF+RR
Sbjct: 250 NQNWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFQFKFVSDAPDKNVTVRFARR 309
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LI ETSK LLQFLQHEFVNI K AERLIGEMGP
Sbjct: 310 TDVMPPIPLETKHHPSSVDLLLIKRLITETSKQNLLQFLQHEFVNISKPHAERLIGEMGP 369
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+FS KMAVKSLTSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 370 DFSSKMAVKSLTSQQLVRIHQLFRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATY 429
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQG DVVTRTA+KRINWS
Sbjct: 430 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWS 489
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAVKSAIQQCCIQLKSKI++
Sbjct: 490 SYKINQVQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKSAIQQCCIQLKSKIMK 549
Query: 546 KIQDREQQERKRNLSR 561
+IQ REQQERKRNLSR
Sbjct: 550 RIQAREQQERKRNLSR 565
>gi|449448770|ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
gi|449525918|ref|XP_004169963.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
Length = 696
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/579 (86%), Positives = 528/579 (91%), Gaps = 23/579 (3%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+PKK KSK+P+ P ES LKQKSPAEFFAENKNIAGFDNPGK LYTTVRELVENSLDSAES
Sbjct: 12 EPKKGKSKTPRKPKESILKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELPVVEITIEEI K+KFNSMIGLVDRERVD +LYDDYET KARE+RLAKEARAQE+QA
Sbjct: 72 ISELPVVEITIEEILKTKFNSMIGLVDRERVDEELYDDYETAKAREKRLAKEARAQEIQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKK +EP+A+KG KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKGREPAASKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+ N+ SFC+LDIDIHRNIPH+H+ EKR+N
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQNYTSFCRLDIDIHRNIPHIHIQEKRDN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
KD WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+FVS+ +KN+TIRFSRR
Sbjct: 252 KDLWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDTPDKNITIRFSRR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPPVP+ETKHHPS+VDLLLIK LIAET+K LLQFLQHEFVNIGK AERLIGEMGP
Sbjct: 312 TDVMPPVPLETKHHPSAVDLLLIKRLIAETAKQNLLQFLQHEFVNIGKPFAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
EFSPKM+VKSLTSQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 EFSPKMSVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SG-----------------------SAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANR 462
SG SAQVFEGHPFIVEAGVS+GGKDVKQGLNIFRFANR
Sbjct: 432 SGRLYLNLELCKLSSKYVNLMSNVDSAQVFEGHPFIVEAGVSIGGKDVKQGLNIFRFANR 491
Query: 463 IPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
IPLLFEQG DVVTRTA+KRINW+SYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD
Sbjct: 492 IPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKGTGKEYIGDDIS 551
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
EIASAVKSAIQQCCIQLKSKIV+KIQ REQQERKRNLSR
Sbjct: 552 EIASAVKSAIQQCCIQLKSKIVKKIQAREQQERKRNLSR 590
>gi|356550360|ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine
max]
Length = 673
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/556 (88%), Positives = 522/556 (93%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK KSK+P+ P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES
Sbjct: 12 ETKKAKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELPVVEITIEEIGKSKFNSMIGLVDRERVD LYDDYETEKARE+RLAKEARAQE+QA
Sbjct: 72 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDAALYDDYETEKAREKRLAKEARAQEMQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVK+ A+K KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKVKDTPASKAIKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEI+SSM++ N++SFC+LDIDIH+NIPHVHLHEKREN
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEITSSMKNQNYVSFCRLDIDIHKNIPHVHLHEKREN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K+ W GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS+ +KNV+IRF+RR
Sbjct: 252 KEHWRGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDAPDKNVSIRFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LIAETSK LLQFLQHEFVNI KS AERLIGEMGP
Sbjct: 312 TDVMPPIPMETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNISKSYAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F KM VKSLTSQQ+VRIHQL RQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 DFGSKMTVKSLTSQQLVRIHQLLRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVSVGGK+VKQGLNIFRFANRIPLLFEQG DVVTRTA KRINWS
Sbjct: 432 SGSAQVFEGHPFIVEAGVSVGGKNVKQGLNIFRFANRIPLLFEQGADVVTRTAHKRINWS 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAVK AIQQCC+QLKSKIV+
Sbjct: 492 SYKINQMQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVK 551
Query: 546 KIQDREQQERKRNLSR 561
K+ REQQERKRNLSR
Sbjct: 552 KMHAREQQERKRNLSR 567
>gi|30685928|ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA topoisomerase 6 subunit B; Short=AtTOP6B;
AltName: Full=Protein BRASSINOSTEROID INSENSITIVE 3;
AltName: Full=Protein ELONGATED HYPOCOTYL 6; AltName:
Full=Protein ROOT HAIRLESS 3
gi|12331188|emb|CAC24690.1| topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
Length = 670
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/556 (86%), Positives = 521/556 (93%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK SK+ K NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAES
Sbjct: 8 ETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAES 67
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VE+TIEEI KSKFNSMIGL+DRERVDT+LYDDYETEKAR +RLAKEARA E+QA
Sbjct: 68 ISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQA 127
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KN A GKK KEP +K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 128 KNLASGKKNKEPGVSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 187
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLHEK+ N
Sbjct: 188 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGN 247
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K++WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RR
Sbjct: 248 KEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRR 307
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP
Sbjct: 308 TDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGP 367
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 368 DFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 427
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVS+GG+DVKQG+NIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 428 SGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWN 487
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDD EIA+AVKSAIQQCCIQLKSKIV+
Sbjct: 488 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVK 547
Query: 546 KIQDREQQERKRNLSR 561
++Q REQQERKR+LSR
Sbjct: 548 RLQAREQQERKRSLSR 563
>gi|359478762|ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
Length = 656
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/556 (86%), Positives = 514/556 (92%), Gaps = 17/556 (3%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+PKK KSK+ + P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES
Sbjct: 12 EPKKTKSKTARKPKENPLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VEITIEEIGKSKFNSMIGLVDRER+D +LYDD+ET KARE+RLAKEAR QELQA
Sbjct: 72 ISELPEVEITIEEIGKSKFNSMIGLVDRERIDEELYDDFETAKAREKRLAKEARTQELQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVKEP A+KG KGRGEASFYRVTCKDNG+GMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKVKEPQASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+ ++ISFC+LDIDIHRNIPH+HLHEKR+N
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQSYISFCRLDIDIHRNIPHIHLHEKRDN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K+RW GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS+ ++KNVTIRF+RR
Sbjct: 252 KERWCGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTSDKNVTIRFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TD+MPPVP ETK+HPS+VDLLLIK LI+ETSK LLQFLQHEFVNIGKS AERLIGEMGP
Sbjct: 312 TDIMPPVPAETKYHPSAVDLLLIKRLISETSKENLLQFLQHEFVNIGKSYAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+FSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 DFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPF+VEAGVS+GGKDVKQGLNIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 432 SGSAQVFEGHPFMVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWN 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGT S+IQQCCIQLKSKIV+
Sbjct: 492 SYKINQAQDKIGVFVSIVSTKIPFKGT-----------------SSIQQCCIQLKSKIVK 534
Query: 546 KIQDREQQERKRNLSR 561
KIQ R QQERKRNLS+
Sbjct: 535 KIQARVQQERKRNLSK 550
>gi|255544766|ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis]
gi|223547352|gb|EEF48847.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis]
Length = 656
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/556 (86%), Positives = 511/556 (91%), Gaps = 17/556 (3%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+PKK KSK+P+ P ES LKQKSPAEFFAENKNIAGFDNPGK LYTTVRELVENSLDSAES
Sbjct: 12 EPKKSKSKTPRKPKESTLKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VEITIEE+GKSKFNS+IGLVDRERVD +LYDDYET KARE+RLAKEARAQE+QA
Sbjct: 72 ISELPFVEITIEEMGKSKFNSLIGLVDRERVDEELYDDYETTKAREKRLAKEARAQEIQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALG+KVKE A KG KGRGEASFY+VTCKDNG+GMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGRKVKEQPAAKGMKGRGEASFYKVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPI+ISSSM+ N+ISFC+LDIDIHRN+PHVHLHEKR+N
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIDISSSMKGQNYISFCRLDIDIHRNVPHVHLHEKRKN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
DRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKF+S+ ++KNVT++F+RR
Sbjct: 252 DDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFISDTSDKNVTVKFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPPVP+ETKHHPSSVDLLLIK LIAETSK LL FLQHEFVNIGK+ AERLIGEMGP
Sbjct: 312 TDVMPPVPLETKHHPSSVDLLLIKRLIAETSKQNLLHFLQHEFVNIGKAHAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
EFSPKMAVKSLT QQIVRIHQLFRQAKFDDP+G CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 EFSPKMAVKSLTDQQIVRIHQLFRQAKFDDPAGDCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 432 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWA 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKG AIQQCCIQLKSKI++
Sbjct: 492 SYKINQMQDKIGVFVSIVSTKIPFKGL-----------------YAIQQCCIQLKSKIMK 534
Query: 546 KIQDREQQERKRNLSR 561
KIQ REQQERKRNLS+
Sbjct: 535 KIQAREQQERKRNLSK 550
>gi|9294405|dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
Length = 694
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/580 (82%), Positives = 521/580 (89%), Gaps = 24/580 (4%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK SK+ K NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAES
Sbjct: 8 ETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAES 67
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VE+TIEEI KSKFNSMIGL+DRERVDT+LYDDYETEKAR +RLAKEARA E+QA
Sbjct: 68 ISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQA 127
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KN A GKK KEP +K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 128 KNLASGKKNKEPGVSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 187
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLHEK+ N
Sbjct: 188 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGN 247
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K++WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RR
Sbjct: 248 KEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRR 307
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP
Sbjct: 308 TDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGP 367
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 368 DFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 427
Query: 426 SG------------------------SAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFAN 461
SG SAQVFEGHPFIVEAGVS+GG+DVKQG+NIFRFAN
Sbjct: 428 SGSFTYFVVNLSFVSSSVDFFLETMFSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFAN 487
Query: 462 RIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDT 521
RIPLLFEQG DVVTRTA+KRINW+SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDD
Sbjct: 488 RIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDI 547
Query: 522 KEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
EIA+AVKSAIQQCCIQLKSKIV+++Q REQQERKR+LSR
Sbjct: 548 SEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSR 587
>gi|297835044|ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp.
lyrata]
gi|297331244|gb|EFH61663.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp.
lyrata]
Length = 691
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/585 (82%), Positives = 523/585 (89%), Gaps = 28/585 (4%)
Query: 2 GND-GDPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSL 60
G+D + KK SK+PK NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+L
Sbjct: 3 GDDLAETKKGSSKNPKNSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENAL 62
Query: 61 DSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARA 120
DSAESISELP VE+TIEEI KSKFNSMIGL+DRERVDT+LYDDYETEKARE+RLAKEARA
Sbjct: 63 DSAESISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKAREKRLAKEARA 122
Query: 121 QELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK 180
E+QAKN A GKK KEP +K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTK
Sbjct: 123 SEIQAKNLASGKKNKEPGVSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTK 182
Query: 181 YGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLH 240
YGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLH
Sbjct: 183 YGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLH 242
Query: 241 EKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTI 300
EK+ NK++WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI
Sbjct: 243 EKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTI 302
Query: 301 RFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+F+RRTDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLI
Sbjct: 303 KFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLATRLI 362
Query: 361 GEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPD 420
GEMGP+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPD
Sbjct: 363 GEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPD 422
Query: 421 MVATYSG------------------------SAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
MVATYSG SAQVFEGHPFIVEAGVS+GG+D G+NI
Sbjct: 423 MVATYSGSFTYFVANLSFVSLSVDFFLETLFSAQVFEGHPFIVEAGVSLGGRD---GINI 479
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEY 516
FRFANRIPLLFEQG DVVTRTA+KRINW+SYKINQTQDKIGVFVSIVSTKIPFKGTGKEY
Sbjct: 480 FRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEY 539
Query: 517 IGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
IGDD EIA+AVKSAIQQCCIQLKSKIV+++Q REQQERKR+LSR
Sbjct: 540 IGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSR 584
>gi|356550362|ref|XP_003543556.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 2 [Glycine
max]
Length = 656
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/556 (86%), Positives = 507/556 (91%), Gaps = 17/556 (3%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK KSK+P+ P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES
Sbjct: 12 ETKKAKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELPVVEITIEEIGKSKFNSMIGLVDRERVD LYDDYETEKARE+RLAKEARAQE+QA
Sbjct: 72 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDAALYDDYETEKAREKRLAKEARAQEMQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVK+ A+K KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKVKDTPASKAIKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEI+SSM++ N++SFC+LDIDIH+NIPHVHLHEKREN
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEITSSMKNQNYVSFCRLDIDIHKNIPHVHLHEKREN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K+ W GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS+ +KNV+IRF+RR
Sbjct: 252 KEHWRGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDAPDKNVSIRFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LIAETSK LLQFLQHEFVNI KS AERLIGEMGP
Sbjct: 312 TDVMPPIPMETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNISKSYAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F KM VKSLTSQQ+VRIHQL RQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 DFGSKMTVKSLTSQQLVRIHQLLRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVSVGGK+VKQGLNIFRFANRIPLLFEQG DVVTRTA KRINWS
Sbjct: 432 SGSAQVFEGHPFIVEAGVSVGGKNVKQGLNIFRFANRIPLLFEQGADVVTRTAHKRINWS 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGT AIQQCC+QLKSKIV+
Sbjct: 492 SYKINQMQDKIGVFVSIVSTKIPFKGT-----------------YAIQQCCVQLKSKIVK 534
Query: 546 KIQDREQQERKRNLSR 561
K+ REQQERKRNLSR
Sbjct: 535 KMHAREQQERKRNLSR 550
>gi|242044166|ref|XP_002459954.1| hypothetical protein SORBIDRAFT_02g018660 [Sorghum bicolor]
gi|241923331|gb|EER96475.1| hypothetical protein SORBIDRAFT_02g018660 [Sorghum bicolor]
Length = 692
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/541 (83%), Positives = 505/541 (93%), Gaps = 1/541 (0%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN+LDSAESISELP +EITIEEI
Sbjct: 47 SLLKQKSPAEFFAENKNIAGFDNPGKSLYTTLRELVENALDSAESISELPDIEITIEEIT 106
Query: 81 KSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSAT 140
++K+N+MIGLV+R+RVD LYDD+E+EK RE+RLAKEAR QE+QAKNAALGKKVKE +
Sbjct: 107 RTKYNTMIGLVERQRVDEALYDDFESEKDREKRLAKEARFQEIQAKNAALGKKVKEAPSV 166
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G KGRGEA ++VTCKDNG+GMPHDDIPNM GRVLSGTKYGL+QTRGKFGLGAKMALIW
Sbjct: 167 RG-KGRGEAVLFKVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLRQTRGKFGLGAKMALIW 225
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
SKMSTGLPIEI SSM+ N+ SFC+LDIDIH+NIPHVHLHEKRENK WHGAEI+V+IEG
Sbjct: 226 SKMSTGLPIEIKSSMKGQNYTSFCRLDIDIHKNIPHVHLHEKRENKTNWHGAEIEVIIEG 285
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
NWTT+RSKILHYMRQMAVITPYAQFLFKF+S+ A+KN+TI+F+RRTDVMPPVP++TKHHP
Sbjct: 286 NWTTHRSKILHYMRQMAVITPYAQFLFKFLSDAADKNLTIKFARRTDVMPPVPLQTKHHP 345
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
S+VDLLLIKGL+AET+K LLQFLQHEFVNI KS AERLIGEMGP+FSPKM VKSLTSQQ
Sbjct: 346 SAVDLLLIKGLVAETTKQNLLQFLQHEFVNISKSHAERLIGEMGPDFSPKMTVKSLTSQQ 405
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVE 440
+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVAT++ S QVFEGHPFIVE
Sbjct: 406 LVRIHQLFRQAKFDDPSGNCLSPAGEYNLRLGIIKELHPDMVATHASSPQVFEGHPFIVE 465
Query: 441 AGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFV 500
AG+S+GGKDVKQG+NIFRFANRIPLLFEQG DV+TRTA KR+ WSSYKINQ QDKIGVFV
Sbjct: 466 AGISIGGKDVKQGINIFRFANRIPLLFEQGADVITRTATKRMVWSSYKINQHQDKIGVFV 525
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
SIVSTKIPFKGTGKEYIGDD EI+SAVKSA++QCC+QLKSKIV+K+Q RE+Q+RKRNL+
Sbjct: 526 SIVSTKIPFKGTGKEYIGDDITEISSAVKSALKQCCLQLKSKIVKKLQARERQDRKRNLN 585
Query: 561 R 561
R
Sbjct: 586 R 586
>gi|294460193|gb|ADE75679.1| unknown [Picea sitchensis]
Length = 676
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/548 (81%), Positives = 497/548 (90%)
Query: 14 SPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVE 73
+P ES L QKSPAEFFAENKNIAGFDNPGKSLYTTVREL EN+LDS ES++ELP +E
Sbjct: 23 TPAKGKESVLTQKSPAEFFAENKNIAGFDNPGKSLYTTVRELAENALDSTESVAELPAIE 82
Query: 74 ITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKK 133
+TIEEI KS FN+MIGL+DRERVD LY D+E+ KARE+RLAKEAR QE AK+AALGKK
Sbjct: 83 VTIEEISKSTFNTMIGLIDRERVDAALYGDFESGKAREKRLAKEAREQERLAKSAALGKK 142
Query: 134 VKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 193
KE S TK KGRGE +F+RVTCKDNG+GMPHDDIPNM GRVLSGTKYGLKQTRGKFGLG
Sbjct: 143 PKEMSTTKSQKGRGETTFFRVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLG 202
Query: 194 AKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAE 253
AKMALIWSKMSTGLPI+I S M+ N++SFC+LDIDIH+NIPHVH+HEKR+N D+W+GAE
Sbjct: 203 AKMALIWSKMSTGLPIDIYSGMKGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDKWNGAE 262
Query: 254 IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVP 313
IQV IEGNWTTYRSKI+ YMRQMAVITPYAQ LF++VS +KNVTIRF+RRTDVMPPVP
Sbjct: 263 IQVTIEGNWTTYRSKIIQYMRQMAVITPYAQLLFRYVSATVDKNVTIRFARRTDVMPPVP 322
Query: 314 VETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAV 373
+ET +HPS+VDLLLIK LIAETSK L+QFLQHEFVNI KS A+RLIGEMGP+F+PKMAV
Sbjct: 323 IETNYHPSAVDLLLIKRLIAETSKQNLIQFLQHEFVNISKSHADRLIGEMGPDFTPKMAV 382
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
KSL+SQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY GS VFE
Sbjct: 383 KSLSSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYEGSPHVFE 442
Query: 434 GHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ 493
GHPFIVEAG+S+GGKDVKQG+N+FRFANRIPLLFEQG DV+TRTAMKRINW+SYKINQTQ
Sbjct: 443 GHPFIVEAGISLGGKDVKQGINVFRFANRIPLLFEQGADVITRTAMKRINWNSYKINQTQ 502
Query: 494 DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
DKIGVFVSIVSTKIPFKGTGKEYIGDD EIA++VK+AIQQCC+QLKSKIVRK Q RE+Q
Sbjct: 503 DKIGVFVSIVSTKIPFKGTGKEYIGDDITEIATSVKAAIQQCCVQLKSKIVRKQQARERQ 562
Query: 554 ERKRNLSR 561
ERKRNL++
Sbjct: 563 ERKRNLTK 570
>gi|218201815|gb|EEC84242.1| hypothetical protein OsI_30680 [Oryza sativa Indica Group]
Length = 696
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/541 (83%), Positives = 506/541 (93%), Gaps = 1/541 (0%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN+LDSAESISELP +EI IEEI
Sbjct: 51 SLLKQKSPAEFFAENKNIAGFDNPGKSLYTTMRELVENALDSAESISELPDIEIIIEEIT 110
Query: 81 KSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSAT 140
KSKFN+MIGLVDR+R+D +LYDD+E+ KARE+RLAKEAR QE QAKNAALGKKVKE A
Sbjct: 111 KSKFNTMIGLVDRQRIDEELYDDFESAKAREKRLAKEARFQETQAKNAALGKKVKEAPAA 170
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G KGRGEA+F+RVTCKDNG+GMPHDDIPNM GRVLSGTKYGL+QTRGKFGLGAKMALIW
Sbjct: 171 RG-KGRGEAAFFRVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLRQTRGKFGLGAKMALIW 229
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
SKMSTGLPIEI SSM+ NFISFC+LDIDIH+N+PHVHLHEKRENKDRWHGAE+QV+IEG
Sbjct: 230 SKMSTGLPIEIKSSMKGQNFISFCRLDIDIHKNVPHVHLHEKRENKDRWHGAELQVIIEG 289
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
NWTT+RSKILHYMRQMAVITPYAQFLF+F+S+ +KN+TI+F+RRTDVMPP+P++TKHHP
Sbjct: 290 NWTTHRSKILHYMRQMAVITPYAQFLFRFLSDSPDKNLTIQFARRTDVMPPIPLQTKHHP 349
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
S+VDLLLIK LI+ET+K LLQFLQHEFVNI KS AERLIGEMGP+FS K VKSLTSQQ
Sbjct: 350 SAVDLLLIKRLISETTKQNLLQFLQHEFVNISKSHAERLIGEMGPDFSAKTTVKSLTSQQ 409
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVE 440
+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPD+VAT++ S QVFEGHPFIVE
Sbjct: 410 LVRIHQLFRQAKFDDPSGNCLSPAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFIVE 469
Query: 441 AGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFV 500
AG+S+GGKDVK GLNIFR+ANRIPLLFEQG DV+TRTA+KRINWSSYKINQ QDKIGVFV
Sbjct: 470 AGISIGGKDVKHGLNIFRYANRIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFV 529
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
SIVSTKIPFKGTGKEYIGDD EIASAV+SA++QCC+QLKSKIV+K+Q RE+Q+RKRNL+
Sbjct: 530 SIVSTKIPFKGTGKEYIGDDITEIASAVQSALKQCCLQLKSKIVKKLQARERQDRKRNLN 589
Query: 561 R 561
R
Sbjct: 590 R 590
>gi|115478332|ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group]
gi|49387842|dbj|BAD26507.1| putative topoisomerase 6 subunit B [Oryza sativa Japonica Group]
gi|113630994|dbj|BAF24675.1| Os09g0279600 [Oryza sativa Japonica Group]
gi|222641206|gb|EEE69338.1| hypothetical protein OsJ_28656 [Oryza sativa Japonica Group]
Length = 696
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/541 (83%), Positives = 505/541 (93%), Gaps = 1/541 (0%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN+LDSAESISELP +EI IEEI
Sbjct: 51 SLLKQKSPAEFFAENKNIAGFDNPGKSLYTTMRELVENALDSAESISELPDIEIIIEEIT 110
Query: 81 KSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSAT 140
KSKFN+MIGLVDR+R+D +LYDD+E+ KARE+RLAKEAR QE QAKNAALGKKVKE A
Sbjct: 111 KSKFNTMIGLVDRQRIDEELYDDFESAKAREKRLAKEARFQETQAKNAALGKKVKEAPAA 170
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G KGRGEA+F+RVTCKDNG+GMPHDDIPNM GRVLSGTKYGL+QTRGKFGLGAKMALIW
Sbjct: 171 RG-KGRGEAAFFRVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLRQTRGKFGLGAKMALIW 229
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
SKMSTGLPIEI SSM+ NFISFC LDIDIH+N+PHVHLHEKRENKDRWHGAE+QV+IEG
Sbjct: 230 SKMSTGLPIEIKSSMKGQNFISFCLLDIDIHKNVPHVHLHEKRENKDRWHGAELQVIIEG 289
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
NWTT+RSKILHYMRQMAVITPYAQFLF+F+S+ +KN+TI+F+RRTDVMPP+P++TKHHP
Sbjct: 290 NWTTHRSKILHYMRQMAVITPYAQFLFRFLSDSPDKNLTIQFARRTDVMPPIPLQTKHHP 349
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
S+VDLLLIK LI+ET+K LLQFLQHEFVNI KS AERLIGEMGP+FS K VKSLTSQQ
Sbjct: 350 SAVDLLLIKRLISETTKQNLLQFLQHEFVNISKSHAERLIGEMGPDFSAKTTVKSLTSQQ 409
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVE 440
+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPD+VAT++ S QVFEGHPFIVE
Sbjct: 410 LVRIHQLFRQAKFDDPSGNCLSPAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFIVE 469
Query: 441 AGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFV 500
AG+S+GGKDVK GLNIFR+ANRIPLLFEQG DV+TRTA+KRINWSSYKINQ QDKIGVFV
Sbjct: 470 AGISIGGKDVKHGLNIFRYANRIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFV 529
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
SIVSTKIPFKGTGKEYIGDD EIASAV+SA++QCC+QLKSKIV+K+Q RE+Q+RKRNL+
Sbjct: 530 SIVSTKIPFKGTGKEYIGDDITEIASAVQSALKQCCLQLKSKIVKKLQARERQDRKRNLN 589
Query: 561 R 561
R
Sbjct: 590 R 590
>gi|357153220|ref|XP_003576379.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Brachypodium
distachyon]
Length = 688
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/554 (81%), Positives = 507/554 (91%), Gaps = 2/554 (0%)
Query: 9 KRKSKSPKTPN-ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESIS 67
K K+ S +P ES+LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN+LDSAESIS
Sbjct: 30 KGKASSKASPEAESSLKQKSPAEFFAENKNIAGFDNPGKSLYTTLRELVENALDSAESIS 89
Query: 68 ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKN 127
ELP +EITIEEI KSKFN+MIGLVD+ERVD LYDD+E+ KARE+RLAKEAR +E QAKN
Sbjct: 90 ELPDIEITIEEITKSKFNTMIGLVDQERVDEALYDDFESAKAREKRLAKEARFRETQAKN 149
Query: 128 AALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTR 187
AALGKKVK+ A +G KGRGEASF+RVTCKDNG+GMPH+DIPNM GRVLSGTKYGL+QTR
Sbjct: 150 AALGKKVKDAPAARG-KGRGEASFFRVTCKDNGRGMPHEDIPNMLGRVLSGTKYGLRQTR 208
Query: 188 GKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD 247
GKFGLGAKMALIWSKMSTGLPIEI SSM+ N+ISFC+LDIDIH+N PHVH+HEKRENKD
Sbjct: 209 GKFGLGAKMALIWSKMSTGLPIEIKSSMKEQNYISFCRLDIDIHKNAPHVHVHEKRENKD 268
Query: 248 RWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTD 307
WHGAEIQV+IEGNWTT+RS+ILHYMRQMAVITPYAQFLF+F+S+ EKN+ I+F+RRTD
Sbjct: 269 HWHGAEIQVIIEGNWTTHRSRILHYMRQMAVITPYAQFLFRFLSDAPEKNLMIKFTRRTD 328
Query: 308 VMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEF 367
VMPPVP+ TKHHPS+VDLLL+K LIA+T+K LLQFLQHEFVNI K+ A+RLIGEMG F
Sbjct: 329 VMPPVPLLTKHHPSAVDLLLLKRLIADTTKQNLLQFLQHEFVNIRKAHADRLIGEMGSGF 388
Query: 368 SPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSG 427
S + VKSLTSQQ+VRI QLFR+ KFDDPSG CLSPAGEYNLRLGIIKELHPD+VAT++
Sbjct: 389 SAETTVKSLTSQQLVRIQQLFREVKFDDPSGNCLSPAGEYNLRLGIIKELHPDLVATHAS 448
Query: 428 SAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
S QVFEGHPFIVEAGVS+GGKDVKQGLNIFRFANRIPLLFEQG DV+TRTA+KRINWSSY
Sbjct: 449 SPQVFEGHPFIVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVITRTALKRINWSSY 508
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKI 547
KINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAVKSA++QCC+QLKSKIV+++
Sbjct: 509 KINQQQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKSALKQCCLQLKSKIVKRL 568
Query: 548 QDREQQERKRNLSR 561
Q RE+Q+RKRNL++
Sbjct: 569 QARERQDRKRNLNK 582
>gi|53124895|emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativa Indica Group]
Length = 696
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/541 (83%), Positives = 505/541 (93%), Gaps = 1/541 (0%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S LKQKSPAEFFAENKNIAGFDNPGKSLYTT+RELVEN+LDSAESISELP +EI IEEI
Sbjct: 51 SLLKQKSPAEFFAENKNIAGFDNPGKSLYTTMRELVENALDSAESISELPDIEIIIEEIT 110
Query: 81 KSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSAT 140
KSKFN+MIGLVDR+R+D +LYDD+E+ KARE+RLAKEAR QE QAKNAALGKKVKE A
Sbjct: 111 KSKFNTMIGLVDRQRIDEELYDDFESAKAREKRLAKEARFQETQAKNAALGKKVKEAPAA 170
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G KGRGEA+F+ VTCKDNG+GMPHDDIPNM GRVLSGTKYGL+QTRGKFGLGAKMALIW
Sbjct: 171 RG-KGRGEAAFFGVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLRQTRGKFGLGAKMALIW 229
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
SKMSTGLPIEI SSM+ NFISFC+LDIDIH+N+PHVHLHEKRENKDRWHGAE+QV+IEG
Sbjct: 230 SKMSTGLPIEIKSSMKGQNFISFCRLDIDIHKNVPHVHLHEKRENKDRWHGAELQVIIEG 289
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
NWTT+RSKILHYMRQMAVITPYAQFLF+F+S+ +KN+TI+F+RRTDVMPP+P++TKHHP
Sbjct: 290 NWTTHRSKILHYMRQMAVITPYAQFLFRFLSDSPDKNLTIQFARRTDVMPPIPLQTKHHP 349
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
S+VDLLLIK LI+ET+K LLQFLQHEFVNI KS AERLIGEMGP+FS K VKSLTSQQ
Sbjct: 350 SAVDLLLIKRLISETTKQNLLQFLQHEFVNISKSHAERLIGEMGPDFSAKTTVKSLTSQQ 409
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVE 440
+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPD+VAT++ S QVFEGHPFIVE
Sbjct: 410 LVRIHQLFRQAKFDDPSGNCLSPAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFIVE 469
Query: 441 AGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFV 500
AG+S+GGKDVK GLNIFR+ANRIPLLFEQG DV+TRTA+KRINWSSYKINQ QDKIGVFV
Sbjct: 470 AGISIGGKDVKHGLNIFRYANRIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFV 529
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
SIVSTKIPFKGTGKEYIGDD EIASAV+SA++QCC+QLKSKIV+K+Q RE+Q+RKRNL+
Sbjct: 530 SIVSTKIPFKGTGKEYIGDDITEIASAVQSALKQCCLQLKSKIVKKLQARERQDRKRNLN 589
Query: 561 R 561
R
Sbjct: 590 R 590
>gi|168052616|ref|XP_001778736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669855|gb|EDQ56434.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 677
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/536 (78%), Positives = 481/536 (89%), Gaps = 1/536 (0%)
Query: 26 KSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFN 85
+SPAEFF+ENKNIAGFDNPGKSLYTTVRELVEN+LDSAESI+ELPV+E+TIEEI KS FN
Sbjct: 35 ESPAEFFSENKNIAGFDNPGKSLYTTVRELVENALDSAESIAELPVIEVTIEEISKSAFN 94
Query: 86 SMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKG 145
+MIGLVDRER+D LYDD+E+EKA+E+RLAKEA+ QE AK A GKKVK+P A G KG
Sbjct: 95 AMIGLVDRERIDAALYDDFESEKAKEKRLAKEAKEQEKVAKALAAGKKVKDPHAKTG-KG 153
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
RG+ F++VTCKDNGKGMPH DIPNM GRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST
Sbjct: 154 RGDTCFFKVTCKDNGKGMPHVDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 213
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
GLPI+I SS + +FISFCKLD++IH+NIP++H+HEKR N ++W GAE+QV IEGNWTTY
Sbjct: 214 GLPIDIWSSTKGQDFISFCKLDLNIHQNIPNIHVHEKRPNPEKWRGAELQVTIEGNWTTY 273
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
R+KI++Y+RQMAVITPYAQF F ++ + EKN+ IRF+RRTDVMPPVP ETKHHPS+VDL
Sbjct: 274 RAKIINYLRQMAVITPYAQFNFSYIGPIPEKNLAIRFARRTDVMPPVPEETKHHPSAVDL 333
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
LLIK LIAE+ + L FLQ EFV+I K+ AERLIGEMGPEF PKM VKSL+ +QIVR+H
Sbjct: 334 LLIKRLIAESKEIHLQAFLQKEFVSINKAHAERLIGEMGPEFQPKMLVKSLSDEQIVRLH 393
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
QLFRQAKFDDPSG CLSPAGEYNLRLGI+KEL+PD+VATY GSAQVFEGHPFIVEAGVS+
Sbjct: 394 QLFRQAKFDDPSGQCLSPAGEYNLRLGIMKELNPDLVATYEGSAQVFEGHPFIVEAGVSL 453
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
GGKDVK G+NIFRFANRIPLLFEQGGDVVTRTAMKRINW SYKINQ QDKIGVFVSIVST
Sbjct: 454 GGKDVKPGINIFRFANRIPLLFEQGGDVVTRTAMKRINWGSYKINQQQDKIGVFVSIVST 513
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
KIPFKGTGKEYIGDD EIA+AVKS++Q CCIQLK+KIVR+ Q +E+Q+RKRNLS+
Sbjct: 514 KIPFKGTGKEYIGDDISEIAAAVKSSLQNCCIQLKAKIVRQQQAKERQQRKRNLSK 569
>gi|34558725|gb|AAQ75096.1| topoisomerase 6 subunit B-like protein [Oryza sativa Japonica
Group]
Length = 615
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/510 (82%), Positives = 475/510 (93%), Gaps = 1/510 (0%)
Query: 52 VRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARE 111
+RELVEN+LDSAESISELP +EI IEEI KSKFN+MIGLVDR+R+D +LYDD+E+ KARE
Sbjct: 1 MRELVENALDSAESISELPDIEIIIEEITKSKFNTMIGLVDRQRIDEELYDDFESAKARE 60
Query: 112 RRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNM 171
+RLAKEAR QE QAKNAALGKKVKE A +G KGRGEA+F+RVTCKDNG+GMPHDDIPNM
Sbjct: 61 KRLAKEARFQETQAKNAALGKKVKEAPAARG-KGRGEAAFFRVTCKDNGRGMPHDDIPNM 119
Query: 172 FGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIH 231
GRVLSGTKYGL+QTRGKFGLGAKMALIWSKMSTGLPIEI SSM+ NFISFC LDIDIH
Sbjct: 120 LGRVLSGTKYGLRQTRGKFGLGAKMALIWSKMSTGLPIEIKSSMKGQNFISFCLLDIDIH 179
Query: 232 RNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS 291
+N+PHVHLHEKRENKDRWHGAE+QV+IEGNWTT+RSKILHYMRQMAVITPYAQFLF+F+S
Sbjct: 180 KNVPHVHLHEKRENKDRWHGAELQVIIEGNWTTHRSKILHYMRQMAVITPYAQFLFRFLS 239
Query: 292 EVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNI 351
+ +KN+TI+F+RRTDVMPP+P++TKHHPS+VDLLLIK LI+ET+K LLQFLQHEFVNI
Sbjct: 240 DSPDKNLTIQFARRTDVMPPIPLQTKHHPSAVDLLLIKRLISETTKQNLLQFLQHEFVNI 299
Query: 352 GKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRL 411
KS AERLIGEMGP+FS K VKSLTSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRL
Sbjct: 300 SKSHAERLIGEMGPDFSAKTTVKSLTSQQLVRIHQLFRQAKFDDPSGNCLSPAGEYNLRL 359
Query: 412 GIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG 471
GIIKELHPD+VAT++ S QVFEGHPFIVEAG+S+GGKDVK GLNIFR+ANRIPLLFEQG
Sbjct: 360 GIIKELHPDLVATHASSPQVFEGHPFIVEAGISIGGKDVKHGLNIFRYANRIPLLFEQGA 419
Query: 472 DVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSA 531
DV+TRTA+KRINWSSYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAV+SA
Sbjct: 420 DVITRTALKRINWSSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVQSA 479
Query: 532 IQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
++QCC+QLKSKIV+K+Q RE+Q+RKRNL+R
Sbjct: 480 LKQCCLQLKSKIVKKLQARERQDRKRNLNR 509
>gi|302772521|ref|XP_002969678.1| hypothetical protein SELMODRAFT_92654 [Selaginella moellendorffii]
gi|300162189|gb|EFJ28802.1| hypothetical protein SELMODRAFT_92654 [Selaginella moellendorffii]
Length = 655
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/544 (77%), Positives = 470/544 (86%), Gaps = 11/544 (2%)
Query: 26 KSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFN 85
+SPAEFF+ENKNIAGFDNPGKSLYTTVRELVEN+LDSAESI+ELP +E+TIEEI KSKFN
Sbjct: 9 ESPAEFFSENKNIAGFDNPGKSLYTTVRELVENALDSAESIAELPTIEVTIEEISKSKFN 68
Query: 86 SMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKG 145
+MIGLVD ERVD +LYDDYE EKARE+RLAKEAR QE QAK A GKKV P K KG
Sbjct: 69 AMIGLVDHERVDAELYDDYENEKAREKRLAKEAREQERQAKAIAAGKKVTVP---KAGKG 125
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
RG+ FY+V+CKDNGKGMPHDDIPNM GRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST
Sbjct: 126 RGDTVFYKVSCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 185
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
GLPIEISS+M+ FISFC+LDIDIH+NIP+VH+ EK+ N WHGAEI V IEGNWTTY
Sbjct: 186 GLPIEISSAMKGQKFISFCRLDIDIHKNIPNVHVLEKKPNTTGWHGAEIHVTIEGNWTTY 245
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
RSK++ YMRQMAVITPYAQFLF++ + EKNV+++F RRTDVMPP P ETK+HPS+VDL
Sbjct: 246 RSKVISYMRQMAVITPYAQFLFRYRAGTPEKNVSVQFVRRTDVMPPAPPETKYHPSAVDL 305
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
LLIK LIAE SK TL+Q+LQ +FV+I KS AERLIGEMGP+F+PKM VK LT QQ+VRIH
Sbjct: 306 LLIKRLIAEKSKQTLIQYLQQDFVSINKSYAERLIGEMGPDFTPKMLVKDLTDQQLVRIH 365
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSG--------SAQVFEGHPF 437
QLFRQAKFDDP G CLSPAGEYNLRLGI KELHPDMVAT G S QVFEGHPF
Sbjct: 366 QLFRQAKFDDPDGDCLSPAGEYNLRLGITKELHPDMVATCQGNEMSFGFDSVQVFEGHPF 425
Query: 438 IVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
IVEA VS+GGK VK GLNIFRFANRIPLLFEQGGDV+TRTA KRI+WS+YKI+ QDK+G
Sbjct: 426 IVEAAVSLGGKSVKPGLNIFRFANRIPLLFEQGGDVITRTATKRISWSAYKISHLQDKVG 485
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
VFVSIVSTKIPFKGTGKEYIGDD EIAS VKSAIQQCCIQLK+K+VR+ R++ ERK+
Sbjct: 486 VFVSIVSTKIPFKGTGKEYIGDDITEIASGVKSAIQQCCIQLKAKLVRQKAARDKLERKK 545
Query: 558 NLSR 561
NLSR
Sbjct: 546 NLSR 549
>gi|302799060|ref|XP_002981289.1| hypothetical protein SELMODRAFT_154417 [Selaginella moellendorffii]
gi|300150829|gb|EFJ17477.1| hypothetical protein SELMODRAFT_154417 [Selaginella moellendorffii]
Length = 578
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/475 (77%), Positives = 411/475 (86%), Gaps = 3/475 (0%)
Query: 87 MIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGR 146
MIGLVD ERVD +LYDDYE EKARE+RLAKEAR QE QAK A GKKV P K KGR
Sbjct: 1 MIGLVDHERVDAELYDDYENEKAREKRLAKEAREQERQAKAIAAGKKVTVP---KAGKGR 57
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
G+ FY+V+CKDNGKGMPHDDIPNM GRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG
Sbjct: 58 GDTVFYKVSCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 117
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
LPIEISS+M+ FISFC+LDIDIH+NIP+VH+ EK+ N WHGAEI V IEGNWTTYR
Sbjct: 118 LPIEISSAMKGQKFISFCRLDIDIHKNIPNVHVLEKKPNTTGWHGAEIHVTIEGNWTTYR 177
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
SK++ YMRQMAVITPYAQFLF++ + EKNV+++F RRTDVMPP P ETK+HPS+VDLL
Sbjct: 178 SKVISYMRQMAVITPYAQFLFRYRAGTPEKNVSVQFVRRTDVMPPAPPETKYHPSAVDLL 237
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
LIK LIAE SK TL+Q+LQ +FV+I KS AERLIGEMGP+F+PKM VK LT QQ+VRIHQ
Sbjct: 238 LIKRLIAEKSKQTLIQYLQQDFVSINKSYAERLIGEMGPDFTPKMLVKDLTDQQLVRIHQ 297
Query: 387 LFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
LFRQAKFDDP G CLSPAGEYNLRLGI KELHPDMVAT G+ QVFEGHPFIVEA VS+G
Sbjct: 298 LFRQAKFDDPDGDCLSPAGEYNLRLGITKELHPDMVATCQGNVQVFEGHPFIVEAAVSLG 357
Query: 447 GKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTK 506
GK VK GLNIFRFANRIPLLFEQGGDV+TRTA KRI+WS+YKI+ QDK+GVFVSIVSTK
Sbjct: 358 GKSVKPGLNIFRFANRIPLLFEQGGDVITRTATKRISWSAYKISHLQDKVGVFVSIVSTK 417
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
IPFKGTGKEYIGDD EIAS VKSAIQQCCIQLK+K+VR+ R++ ERK+NLSR
Sbjct: 418 IPFKGTGKEYIGDDITEIASGVKSAIQQCCIQLKAKLVRQKAARDKLERKKNLSR 472
>gi|302841015|ref|XP_002952053.1| hypothetical protein VOLCADRAFT_62055 [Volvox carteri f.
nagariensis]
gi|300262639|gb|EFJ46844.1| hypothetical protein VOLCADRAFT_62055 [Volvox carteri f.
nagariensis]
Length = 675
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/553 (62%), Positives = 419/553 (75%), Gaps = 7/553 (1%)
Query: 15 PKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEI 74
P P L QKSPAEFFAENKNIAGFDNPGK LYTTVRELVEN+LD+AESISELP +EI
Sbjct: 2 PPKPKADVLVQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENALDAAESISELPYIEI 61
Query: 75 TIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAK--NAALGK 132
TIEE+ K++ N + G+ + R+D +LY D+E+E A+++RLAKEAR +E K
Sbjct: 62 TIEEVSKARLNRIRGVEEHGRLDEQLYQDFESEDAKKKRLAKEARDKERLQKLIEKKKEL 121
Query: 133 KVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGL 192
+A GA RG FY+VT KDNG GMPH DIPNM GRVLSGTKYG+KQTRGKFGL
Sbjct: 122 AAAGAAAKPGAGMRGNL-FYKVTVKDNGAGMPHRDIPNMLGRVLSGTKYGVKQTRGKFGL 180
Query: 193 GAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRN----IPHVHLHEKRENKDR 248
GAKMALIWSKM+TGLP EISS+ + S LDIDIHR+ IP+VHL E+ N D
Sbjct: 181 GAKMALIWSKMTTGLPFEISSARKGCGTRSHYVLDIDIHRHVRACIPNVHLEEQLPNPDH 240
Query: 249 WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV 308
WHG+ + + IEGNW YRSKI+ Y+RQ+AVITPYA F F + +E + ++ I F RRTDV
Sbjct: 241 WHGSCLSLTIEGNWQYYRSKIVRYLRQIAVITPYAHFCFSYKAEDDKNSMRINFRRRTDV 300
Query: 309 MPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFS 368
MPP P TKHHPSSVDL L+K LIA T TL FL+ EF + +LAERL GEM
Sbjct: 301 MPPPPRATKHHPSSVDLELVKRLIAATDTKTLTSFLKKEFDCVRPALAERLAGEMQAGVE 360
Query: 369 PKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGS 428
K LT +Q+VR+HQL + +FDDP G LSPAGEYNLRLG++KEL+PDM+AT+ G
Sbjct: 361 GDTNPKHLTDKQVVRLHQLLHEVRFDDPKGDHLSPAGEYNLRLGVMKELNPDMIATHQGD 420
Query: 429 AQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYK 488
+VFEGH FIVEA VSVGG+D+K G+N+ RFANRIPLLFE G DV+T+TA+KRINW+SYK
Sbjct: 421 VRVFEGHAFIVEAAVSVGGRDIKPGINVHRFANRIPLLFEGGSDVITKTALKRINWASYK 480
Query: 489 INQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQ 548
INQ+ DK+GVFVSIVSTKIPFKG GKEYIGDD +E+ +AVK+AIQ CC+QLK+KIVR I
Sbjct: 481 INQSTDKVGVFVSIVSTKIPFKGAGKEYIGDDVEEMVAAVKAAIQACCVQLKAKIVRAIA 540
Query: 549 DREQQERKRNLSR 561
REQ++RKRNL++
Sbjct: 541 AREQKQRKRNLTK 553
>gi|384253229|gb|EIE26704.1| hypothetical protein COCSUDRAFT_11853 [Coccomyxa subellipsoidea
C-169]
Length = 641
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/540 (61%), Positives = 408/540 (75%), Gaps = 14/540 (2%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
++QKSPAEFFAENKNIAGFDNPGK LYTTVRELVENSLD+AES LP VE+TIEEI +
Sbjct: 1 MQQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENSLDAAESSGNLPDVEVTIEEISQK 60
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
+ N++ G+ + ERVD LY D+ETE R++R+AKEAR QE K A + + +A+K
Sbjct: 61 RMNTIRGIANLERVDETLYQDFETEDLRKKRMAKEAREQEKLMKAAQKAEVKRAAAASKS 120
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
K +FY+VT KDNG GMPH DIPN+ GRVLSGTKYGL+QTRGKFGLGAKMALIWSK
Sbjct: 121 TK-----TFYKVTVKDNGTGMPHKDIPNLLGRVLSGTKYGLQQTRGKFGLGAKMALIWSK 175
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW 262
MSTGLPIE+ S+ + +FIS+ KLDIDIH+N P+VH E++ N DRWHGAE+ V I GNW
Sbjct: 176 MSTGLPIEVWSARQGQSFISYYKLDIDIHKNEPNVHKTEEKPNPDRWHGAELSVTILGNW 235
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
YR+KI Y+RQ+AVITPYA+F F +V+E + ++ I F+RRTD MP P E K+HP+S
Sbjct: 236 QYYRAKIHKYLRQIAVITPYAKFSFAYVAEDEKNSIRINFTRRTDKMPAPPKEVKYHPAS 295
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPK---MAVKSLTSQ 379
VDL LIK LIA T TL QFL +F +I K A P P M + SL+ Q
Sbjct: 296 VDLELIKRLIAVTKCSTLRQFLYKDFSSISKDYAGM------PPHQPSRFPMPLHSLSQQ 349
Query: 380 QIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIV 439
+HQL +AKF DP LSPAGEYNLRLGI+KEL+P++VAT+ G A+V EGH F+V
Sbjct: 350 CKGLLHQLLHEAKFKDPDKDHLSPAGEYNLRLGILKELNPELVATHQGDARVLEGHAFVV 409
Query: 440 EAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVF 499
EA VSVGG+D+K G+N++RFANRIPLLFE G DV+TRTA+KRINW++YKINQT DK+GVF
Sbjct: 410 EAAVSVGGRDIKPGINVYRFANRIPLLFEGGSDVITRTALKRINWANYKINQTSDKVGVF 469
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
VSIVSTKIP+KG GKEYI DD E+ AVK A+QQCC+QLK KI ++ +EQ+ R++NL
Sbjct: 470 VSIVSTKIPYKGAGKEYIADDMDEMVHAVKHALQQCCLQLKVKITKQQAAKEQKLRRKNL 529
>gi|294464867|gb|ADE77939.1| unknown [Picea sitchensis]
Length = 472
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/366 (83%), Positives = 341/366 (93%)
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
MALIWSKMSTGLPI+I S M+ N++SFC+LDIDIH+NIPHVH+HEKR+N D+W+GAEIQ
Sbjct: 1 MALIWSKMSTGLPIDIYSGMKGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDKWNGAEIQ 60
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
V IEGNWTTYRSKI+ YMRQMAVITPYAQFLF++VS +KNVTIRF+RRTDVMPPVP+E
Sbjct: 61 VTIEGNWTTYRSKIIQYMRQMAVITPYAQFLFRYVSATVDKNVTIRFARRTDVMPPVPIE 120
Query: 316 TKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKS 375
T +HPS+VDLLLIK LIAETSK L+QFLQHEFVNI KS A+RLIGEMGP+F+PKMAVKS
Sbjct: 121 TNYHPSAVDLLLIKRLIAETSKQNLIQFLQHEFVNISKSHADRLIGEMGPDFTPKMAVKS 180
Query: 376 LTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 435
L+SQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY GS VFEGH
Sbjct: 181 LSSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYEGSPHVFEGH 240
Query: 436 PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
PFIVEAG+S+GGKDVKQG+N+FRFANRIPLLFEQG DV+TRTAMKRINW+SYKINQTQDK
Sbjct: 241 PFIVEAGISLGGKDVKQGINVFRFANRIPLLFEQGADVITRTAMKRINWNSYKINQTQDK 300
Query: 496 IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
IGVFVSIVSTKIPFKGTGKEYIGDD EIA++VK+AIQQCC+QLKSKIVRK Q RE+QER
Sbjct: 301 IGVFVSIVSTKIPFKGTGKEYIGDDITEIATSVKAAIQQCCVQLKSKIVRKQQARERQER 360
Query: 556 KRNLSR 561
KRNL++
Sbjct: 361 KRNLTK 366
>gi|307103984|gb|EFN52240.1| hypothetical protein CHLNCDRAFT_26891 [Chlorella variabilis]
Length = 662
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/545 (59%), Positives = 408/545 (74%), Gaps = 8/545 (1%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
L+QKSPAEFFA+N+ IAGFDNPGK LYTT+RELVEN LD+AESIS+LP ++IT+EEI +
Sbjct: 10 LQQKSPAEFFADNRTIAGFDNPGKCLYTTIRELVENGLDAAESISQLPDIDITVEEISQH 69
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAA-----LGKKVKEP 137
+ N M G+ + +R+D +LY DYETE A+++RLAKEA+ E K AA L K +E
Sbjct: 70 RLNKMRGVTNHDRIDEELYQDYETEGAKQKRLAKEAKEMERLEKQAAKSAATLDGKKREL 129
Query: 138 SATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
A + A+ + E +F++VT +DNG GM H DIP+M GRVLSGTKYG+KQTRGKFGLGAKMA
Sbjct: 130 EARRAAQAKTEKNFFKVTVRDNGMGMAHKDIPDMLGRVLSGTKYGVKQTRGKFGLGAKMA 189
Query: 198 LIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV 257
LIWSKMSTGLPIE++S+ IS+ KLD+DI RN P+VH + +N + WHGAE+ VV
Sbjct: 190 LIWSKMSTGLPIEVTSARCGSASISYFKLDLDIQRNQPNVHEQKLLDNGEGWHGAELSVV 249
Query: 258 IEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETK 317
I GNW YR+K+ Y++Q+AVITPYAQF F F +E + +V I F+RRT MP P TK
Sbjct: 250 IAGNWQYYRAKVFKYLQQIAVITPYAQFRFVFKAEDEKSSVRITFARRTTTMPQPPKATK 309
Query: 318 HHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG-EMGPEFSPKMAVKSL 376
HHPSSVDL LIK L + T+ +L FL EF I + LA I EM P ++ L
Sbjct: 310 HHPSSVDLELIKRLASSTNCTSLAAFLSKEFDCIRRDLAGTKISLEM--RCDPSVSPAEL 367
Query: 377 TSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHP 436
T +Q+V +H L Q +F P G LSPAGEYNLRLGI+KEL P+MVAT+ G+ V EGH
Sbjct: 368 TGKQLVAMHDLLHQLRFQPPDGNHLSPAGEYNLRLGIMKELRPEMVATHQGTVGVHEGHA 427
Query: 437 FIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKI 496
F+VEA VSVGG+++K GLNI RFANRIPLLFE G DV+TRTA+KRINWS+YKINQ+ DK+
Sbjct: 428 FVVEAAVSVGGRNIKPGLNIHRFANRIPLLFEGGSDVITRTAIKRINWSAYKINQSSDKV 487
Query: 497 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
GVFVS+VSTKIPFKG GKEYI DD +EI AV++AIQQCC QLK+KI ++ REQ+ RK
Sbjct: 488 GVFVSLVSTKIPFKGAGKEYIADDVEEIQQAVRTAIQQCCSQLKNKISKQQAAREQRLRK 547
Query: 557 RNLSR 561
+NL++
Sbjct: 548 KNLTK 552
>gi|320166117|gb|EFW43016.1| topoisomerase 6 subunit B [Capsaspora owczarzaki ATCC 30864]
Length = 894
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/563 (56%), Positives = 405/563 (71%), Gaps = 9/563 (1%)
Query: 8 KKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESIS 67
K+R + S L+ KSPAEFFA NKNIAGFDN GKSLYTT+RE VENSLD+AE+I
Sbjct: 167 KQRPQAELDADSSSKLEFKSPAEFFANNKNIAGFDNAGKSLYTTIREFVENSLDAAEAIE 226
Query: 68 ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKN 127
LPV+ +T+EEI ++ FNS++GL + R + +LY D A +L A +
Sbjct: 227 VLPVIHVTLEEIEQATFNSLVGLQEHLRKNERLYQDTAVAAAAAAKLVMIALSSLEDVPT 286
Query: 128 AALGKKVKE--------PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGT 179
A G + P+ + RG+A++++VT KDNG GM H+DIPNM GRVL+GT
Sbjct: 287 PAEGPAPMDTSSPASAPPTTASAGRTRGKATYFKVTVKDNGCGMSHNDIPNMLGRVLAGT 346
Query: 180 KYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHL 239
KYG+KQ RG+FGLGAKMALIWSKMSTG PIE+ ++ IS C LDIDI++N+P++
Sbjct: 347 KYGVKQARGRFGLGAKMALIWSKMSTGRPIEVFTATEGSAHISHCVLDIDIYKNVPNIIT 406
Query: 240 HEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVT 299
HEK N +W G EI V+IEGN+ TYRSK+L YMRQMAVITPYA+ F+FV+ A K+
Sbjct: 407 HEKAPNDKQWRGTEISVLIEGNFVTYRSKLLSYMRQMAVITPYAELQFQFVAAQASKSFV 466
Query: 300 IRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAER 358
I++ RR++ MP + VE KHHPSSV+L+++K LI++ L +FL + I LA
Sbjct: 467 IKYGRRSEFMPQLAVEIKHHPSSVNLIVMKKLISDVGASMNLRKFLCSQLSCISSPLAAE 526
Query: 359 LIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELH 418
+I E+G +FS + V LTS Q++RI QLFRQ +F P CLSPAGEYNLRLGI+KEL
Sbjct: 527 IIKELGDDFSADLRVGELTSAQVLRILQLFRQLQFPSPPSECLSPAGEYNLRLGIMKELK 586
Query: 419 PDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTA 478
P+MVAT+ +A VFEGHPFIVEAGVS+GGK + G++++RFANRIPLLFE GGDVVTRT
Sbjct: 587 PEMVATFEETAHVFEGHPFIVEAGVSLGGKTAQPGISVYRFANRIPLLFEAGGDVVTRTV 646
Query: 479 MKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQ 538
+++INW++YKI DK+GVFVSIVSTKIPFKGTGKEYIGDD EI AVK AIQQCC+Q
Sbjct: 647 LQKINWTAYKIKPNVDKVGVFVSIVSTKIPFKGTGKEYIGDDATEIGLAVKHAIQQCCLQ 706
Query: 539 LKSKIVRKIQDREQQERKRNLSR 561
L+ K++R REQQERK+NL++
Sbjct: 707 LRVKLLRNASLREQQERKQNLTK 729
>gi|303276026|ref|XP_003057307.1| type II DNA topoisomerase VI subunit B [Micromonas pusilla
CCMP1545]
gi|226461659|gb|EEH58952.1| type II DNA topoisomerase VI subunit B [Micromonas pusilla
CCMP1545]
Length = 679
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 317/542 (58%), Positives = 389/542 (71%), Gaps = 11/542 (2%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
LK KSPAEFF +NK IAGF+N GKSLYTT+RE +ENSLDSAESI LP + I+IEE+ +
Sbjct: 18 LKSKSPAEFFQDNKGIAGFENAGKSLYTTLREFIENSLDSAESIGMLPEINISIEEVTLT 77
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
++ +IGL R D LY D+ETEK + +RL +E R AK G + P
Sbjct: 78 QYEELIGLKTHVRQDDSLYADFETEKEKTKRLKQEERKANAAAKKGGGGDGTRVP----- 132
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
G G+ +F+R+T +DNGKGM H+DIPNM GRVLSGTKYG++QTRGKFGLG+KMALIWSK
Sbjct: 133 --GGGKKAFFRITVEDNGKGMAHNDIPNMLGRVLSGTKYGVRQTRGKFGLGSKMALIWSK 190
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW 262
+TGLPI I+S+ + FIS LDIDI RN P+VH EK +N W+GA + V+IEGNW
Sbjct: 191 QTTGLPINITSAQPNQKFISNYVLDIDIERNEPNVHKEEKTDNDKNWNGAILSVIIEGNW 250
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEV-AEKNVTIRFSRRTDVMPPVPVETKHHPS 321
+ YR+K+L Y+RQMA++TPYAQF FK+V A+ NV + F RRT+VMP +P TKHHPS
Sbjct: 251 SAYRNKVLSYLRQMAIVTPYAQFNFKYVGATDAKGNVDVVFRRRTEVMPTLPTTTKHHPS 310
Query: 322 SV--DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
+ + LLIK L++ T + TL FLQ EF I K+ A RLI E+G F +M K +T
Sbjct: 311 AAKENQLLIKDLLSNTREKTLQNFLQKEFTCIDKAHAGRLIAELGKGFDAQMPPKEVTDT 370
Query: 380 QIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIV 439
Q RI QL A+F DP GGCLSPAGEYNLRLGI+KEL PD VA++ G A GHP IV
Sbjct: 371 QGTRIQQLLSSARFADPDGGCLSPAGEYNLRLGIMKELSPDWVASFVGPALACAGHPLIV 430
Query: 440 EAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVF 499
EA VS+GGKDVK G N+FRFANRIPLLFE G DVVTR ++R+NW SYKI++ DKIG+F
Sbjct: 431 EACVSLGGKDVKAGFNVFRFANRIPLLFEAGSDVVTR-CVQRLNWGSYKIDKNNDKIGIF 489
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
VSIVSTKIPFKGT KEYIGDD +IA AV AI+ C IQLK KI R +E++ RK+ L
Sbjct: 490 VSIVSTKIPFKGTSKEYIGDDNVDIAEAVDRAIRACAIQLKGKISRAQAAKEKRARKKVL 549
Query: 560 SR 561
R
Sbjct: 550 QR 551
>gi|159462544|ref|XP_001689502.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283490|gb|EDP09240.1| predicted protein [Chlamydomonas reinhardtii]
Length = 639
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/555 (57%), Positives = 392/555 (70%), Gaps = 16/555 (2%)
Query: 22 ALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
AL QKSPAEFFAENKNIAGFDNPGK LYTT+RELVEN+LD+AESI ELP +EITIEE+ K
Sbjct: 9 ALVQKSPAEFFAENKNIAGFDNPGKCLYTTIRELVENALDAAESIGELPAIEITIEEVSK 68
Query: 82 SKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATK 141
++ N + G+ +R+D +LY D+ETE+A+++RLAKEAR QE + K K KE +A
Sbjct: 69 ARLNRIRGVEHHDRLDEQLYQDFETEEAKKKRLAKEAREQE-KLKKLIEKAKRKELAAVA 127
Query: 142 GAKGRGEAS----FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
GA G FY+VT KDNG GMPH DIPNM GRVLSGTKYG+KQTRGKFGLGAKMA
Sbjct: 128 GAAKPGANMRGNLFYKVTVKDNGAGMPHKDIPNMLGRVLSGTKYGVKQTRGKFGLGAKMA 187
Query: 198 LIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV 257
LIWSKM+TGLP EISS+ S +LDIDIH+N P +HL E+ N D WHG+ + +
Sbjct: 188 LIWSKMTTGLPFEISSATPRAALRSHYRLDIDIHKNEPSIHLEEQLPNPDGWHGSSLSLT 247
Query: 258 IEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETK 317
IEGNW+TYRS IL Y+RQ+AVITPYAQF+F + +E + +V I F RRTDVMP P TK
Sbjct: 248 IEGNWSTYRSYILRYLRQIAVITPYAQFMFAYKAEDDKNSVRIGFRRRTDVMPDPPALTK 307
Query: 318 HHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT 377
HHPSSVDL L+K L+ T+ TL FLQ EF + KSLA R++ EM M+ + L
Sbjct: 308 HHPSSVDLELVKRLLRATTAKTLAAFLQKEFDRVDKSLAARVVDEMQAGVEGDMSPRDLD 367
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGII--KELHPDMVATYSGSAQVFE-- 433
+QIVR+HQL + +F DP+G LSPAG N R ++ + P ++ S E
Sbjct: 368 EKQIVRLHQLLHEIRFSDPTGKHLSPAGAGNSRTCVVVGPKFDPHLLRVGSAGPPAREQG 427
Query: 434 -------GHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSS 486
G P EA V + +N+ R+ANRIPLLFE G DV+T+TA++RINWS+
Sbjct: 428 WGCKLGAGAPVWNEATAMVAQSTAHERINVHRYANRIPLLFEGGSDVITKTALRRINWSA 487
Query: 487 YKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
YKINQ DK+GVFVSIVSTKIPFKG GKEYIGDD E+ AVK+AIQ CC+QLKSKI+R
Sbjct: 488 YKINQATDKVGVFVSIVSTKIPFKGAGKEYIGDDVVEMVGAVKAAIQACCLQLKSKIMRA 547
Query: 547 IQDREQQERKRNLSR 561
I REQ++RK+ LS+
Sbjct: 548 IAAREQKQRKKTLSK 562
>gi|308804183|ref|XP_003079404.1| putative topoisomerase 6 subunit B (ISS) [Ostreococcus tauri]
gi|116057859|emb|CAL54062.1| putative topoisomerase 6 subunit B (ISS) [Ostreococcus tauri]
Length = 674
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 306/561 (54%), Positives = 400/561 (71%), Gaps = 15/561 (2%)
Query: 7 PKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESI 66
P + K+P ++ L QKSPAEFF +NK IAGF+N GKSLYTT+RE VEN+LD+AE+I
Sbjct: 2 PPEGARKNPNAKGDANLTQKSPAEFFQDNKGIAGFENAGKSLYTTLREFVENALDAAEAI 61
Query: 67 SELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAK 126
LP ++I IEE+ S++ ++IGL R+D +LY D+E++KA+E+RLA+EA+
Sbjct: 62 GTLPEIDIAIEEVSVSQYENLIGLRAHVRLDDELYADFESDKAKEKRLAQEAKKAAKATT 121
Query: 127 NAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQT 186
+ G+ + TK FY++T KDNGKGM H+DIPNM GRVLSGTKYGL+QT
Sbjct: 122 SGKGGRGGGKREQTK--------CFYKITVKDNGKGMQHEDIPNMLGRVLSGTKYGLRQT 173
Query: 187 RGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK 246
RGKFGLG+KMALIWSK +TGLPI I S++ + FIS LDIDI +N P+VH K N
Sbjct: 174 RGKFGLGSKMALIWSKQTTGLPIHIRSALPNQAFISEYLLDIDIEKNEPNVHKENKLSND 233
Query: 247 DRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKF----VSEVAEKNVTIRF 302
++WHGAE+ V IEGNWTTYR +L YMRQ+A++TPYAQF F++ + K++ I F
Sbjct: 234 EKWHGAELSVTIEGNWTTYRQYVLSYMRQLAIVTPYAQFRFRYTTSSATTSTAKDIDIVF 293
Query: 303 SRRTDVMPPVPVETKHHPSSV--DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
RRTD+MP +P TKHHPS+ ++LLIK L+++T + L+ FL EF +I K L+ RLI
Sbjct: 294 RRRTDIMPALPTATKHHPSAAKENMLLIKDLLSQTREKNLVNFLHKEFTSIPKDLSVRLI 353
Query: 361 GEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPD 420
E+G F M ++ +Q R+ QL QA+FDDP G CLSPAGEYNLRLGI+KEL P+
Sbjct: 354 EELGYGFDADMHPTEVSDKQATRMQQLLAQARFDDPDGACLSPAGEYNLRLGIMKELGPE 413
Query: 421 MVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMK 480
+A++ + GHP +VEA VS+GG+DVK G N+FRFANRIPLLFE G DVVTR ++
Sbjct: 414 WIASFCAPSLACGGHPLVVEACVSLGGRDVKPGFNVFRFANRIPLLFEGGNDVVTR-CVQ 472
Query: 481 RINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLK 540
R+NW +YKI++ DKIGVFVSIVSTKIPFKGT KEYIGD+ EIA AV AI+QC QL+
Sbjct: 473 RLNWGTYKIDKNNDKIGVFVSIVSTKIPFKGTSKEYIGDENIEIAEAVDKAIKQCAAQLR 532
Query: 541 SKIVRKIQDREQQERKRNLSR 561
KIVR R++ RK+ L++
Sbjct: 533 GKIVRAQVQRDRNARKKQLTK 553
>gi|145346636|ref|XP_001417791.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578019|gb|ABO96084.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 672
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/561 (54%), Positives = 402/561 (71%), Gaps = 25/561 (4%)
Query: 15 PKTPN------ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISE 68
PK P + L QKSPAEFF +NK IAGF+N GKSLYTT+RE +EN+LD+AE+I
Sbjct: 2 PKKPTNLNAKGDKNLTQKSPAEFFQDNKGIAGFENAGKSLYTTLREFIENALDAAEAIGT 61
Query: 69 LPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNA 128
LP ++I +EE+ S++ S+IGL R+D +LY D+E++KA+ +RLA+EA+ A
Sbjct: 62 LPEIDIAVEEVSVSQYESLIGLKAHVRLDDELYADFESDKAKAKRLAQEAKKAAKAASA- 120
Query: 129 ALGKKVKEPSATKGAKGRGEAS--FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQT 186
++ +G G+ + + FY++T KDNGKGM H+DIPNM GRVLSGTKYG++QT
Sbjct: 121 ---------ASKRGGGGKRDQAKCFYKITVKDNGKGMQHEDIPNMLGRVLSGTKYGVRQT 171
Query: 187 RGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK 246
RGKFGLG+KMALIWSK +TGLPI I S++ + +FIS LDIDI +N P++H K N
Sbjct: 172 RGKFGLGSKMALIWSKQTTGLPIRIRSALPNQSFISEYALDIDIEKNEPNIHKEAKLPND 231
Query: 247 DRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVA----EKNVTIRF 302
D+WHGAE+ V IEGNWTTYR +L Y+RQ+A++TPYAQF F+FV+ A K++ I F
Sbjct: 232 DKWHGAELSVTIEGNWTTYRQYVLSYLRQLAIVTPYAQFRFRFVTSAATTSTAKDIDIVF 291
Query: 303 SRRTDVMPPVPVETKHHPSSV--DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
RRTD+MP +P TKHHPS+ ++LLIK L+++T + LL FL EF I K + RLI
Sbjct: 292 RRRTDIMPALPTVTKHHPSAAKENMLLIKDLLSQTREKNLLNFLHKEFTCINKDHSSRLI 351
Query: 361 GEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPD 420
E+G F M +T +Q RI QL A+FDDP G CLSPAGEYNLRLGI+KEL P+
Sbjct: 352 QELGYGFDTDMHPSEVTDKQATRIQQLLADARFDDPDGSCLSPAGEYNLRLGIMKELGPE 411
Query: 421 MVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMK 480
+A++ A GHP +VEA VS+GG++VK G N+FRFANRIPLLFE G DVVTR ++
Sbjct: 412 WIASFCAPALACGGHPLVVEACVSLGGREVKPGFNVFRFANRIPLLFEGGNDVVTR-CVQ 470
Query: 481 RINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLK 540
R+NW++YKI++ DKIGVFVSIVSTKIPFKGT KEYIGD+ EIA AV AI+QC +QL+
Sbjct: 471 RLNWNTYKIDKNNDKIGVFVSIVSTKIPFKGTSKEYIGDENNEIADAVDKAIKQCALQLR 530
Query: 541 SKIVRKIQDREQQERKRNLSR 561
KIVR ++++ RK+ L++
Sbjct: 531 GKIVRAQVAKDRKARKKQLAK 551
>gi|255073851|ref|XP_002500600.1| type II DNA topoisomerase VI subunit B [Micromonas sp. RCC299]
gi|226515863|gb|ACO61858.1| type II DNA topoisomerase VI subunit B [Micromonas sp. RCC299]
Length = 683
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 314/543 (57%), Positives = 385/543 (70%), Gaps = 12/543 (2%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
LK KSPAEFF +NK IAGF+N GKSLYTT+RE +ENSLDSAESI LP V+I +EE+ S
Sbjct: 13 LKSKSPAEFFQDNKGIAGFENAGKSLYTTLREFIENSLDSAESIGVLPDVDIAVEEVTLS 72
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
++ +IGL R D+ LY D ET+K +++RL +EA+A AK
Sbjct: 73 QYEDLIGLKAHVRKDSALYADIETDKEKQKRLKEEAKAAAKAAKGGKGDAGGGGRKGGA- 131
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
SF+R+T KDNGKGM HDDIPNM GRVLSGTKYG++QTRGKFGLG+KMALIWSK
Sbjct: 132 ------KSFFRITVKDNGKGMAHDDIPNMLGRVLSGTKYGVRQTRGKFGLGSKMALIWSK 185
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW 262
+TGLPI+I+S+ F S LDI++ +N P+VH EK N WHGAE+ V+IEGNW
Sbjct: 186 QTTGLPIKITSAQPKSKFTSRYVLDINMEKNEPNVHSAEKTPNDSAWHGAELSVIIEGNW 245
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSE--VAEKNVTIRFSRRTDVMPPVPVETKHHP 320
TTYR+K+L Y+RQ+A++TPYAQF F++ S A +NV F RRT+VMP P TKHHP
Sbjct: 246 TTYRNKVLSYLRQLAIVTPYAQFHFRYESAGGDARQNVDATFRRRTEVMPAPPTTTKHHP 305
Query: 321 SSV--DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
S+ + LLIK L+++T + TL FL EF I K A RL+ E+G F P M+ K ++
Sbjct: 306 SAAKENQLLIKDLLSQTREKTLQAFLNKEFTCISKEYAGRLVAELGKGFEPGMSPKEVSD 365
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
Q RI QL A+F DP G CLSPAGEYNLRLGI+KEL PD +A+Y G A +GHP I
Sbjct: 366 TQGTRIQQLLCDARFADPDGACLSPAGEYNLRLGIMKELAPDWIASYVGPALASQGHPLI 425
Query: 439 VEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV 498
VEA VS+GGKDVK G N+FRFANRIPLLFE G DVVTR ++R+NW SYKI++ DKIGV
Sbjct: 426 VEACVSLGGKDVKSGFNVFRFANRIPLLFEAGSDVVTR-CVQRLNWGSYKIDKNNDKIGV 484
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRN 558
FVSIVSTKIPFKGT KEYIGDD EIA AV AI+ C QLK KIVR +E++ RK+
Sbjct: 485 FVSIVSTKIPFKGTSKEYIGDDNTEIAEAVDRAIRGCATQLKGKIVRAQAAKERKARKKV 544
Query: 559 LSR 561
L+R
Sbjct: 545 LTR 547
>gi|412989177|emb|CCO15768.1| DNA topoisomerase VI subunit B [Bathycoccus prasinos]
Length = 705
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/556 (53%), Positives = 396/556 (71%), Gaps = 16/556 (2%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
++ LKQKSPAEFF +NK IAGF+N GKSLYTT+RE +EN+LD+AE I LP V++ +EE+
Sbjct: 24 DANLKQKSPAEFFQDNKGIAGFENAGKSLYTTLREFIENALDAAEHIGVLPQVDVLVEEV 83
Query: 80 GKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSA 139
+++ +MIGL R D LYDD+ETEKAR +RL +EA+ E+Q + AA K
Sbjct: 84 TLTQYETMIGLDAHVRKDDTLYDDFETEKARAKRLEREAKV-EMQLEKAAAANANKGKKG 142
Query: 140 T-----KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGA 194
+KG + S++++T KDNGKGM H DIPNM GRVLSGTKYG++QTRGKFGLG+
Sbjct: 143 GGRGNANSSKGEEKKSYFKITVKDNGKGMEHSDIPNMLGRVLSGTKYGVRQTRGKFGLGS 202
Query: 195 KMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEI 254
KMALIWSK +TGLPI + S+ NF+S LDIDI +N P+VH EK+ N +WHGAE+
Sbjct: 203 KMALIWSKQTTGLPIRVRSAQPGQNFVSEYVLDIDIEKNAPNVHKEEKKPNTTKWHGAEL 262
Query: 255 QVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVA-------EKNVTIRFSRRTD 307
V IEGNWT++R +L Y+RQ+A++TPYA F+++S A +++ + F+RR +
Sbjct: 263 SVTIEGNWTSHRQYVLAYLRQLAIVTPYAALGFRYISSHAAGSAAARNQDIQLHFARRAE 322
Query: 308 VMPPVPVETKHHPSSV--DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
VMPP+P TK+HPS+ + LL+K L++ T + TL F EF I + A RL E+G
Sbjct: 323 VMPPLPRATKYHPSAAKENQLLVKDLLSNTREKTLSGFFNKEFTCINREHANRLSRELGA 382
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
FS M K+++ +Q RI QL A+F DPSG CLSPAGEYNLRLG++KEL PD +A+Y
Sbjct: 383 GFSASMHPKNVSDKQGARIQQLLASARFSDPSGECLSPAGEYNLRLGVMKELGPDWIASY 442
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
+ A GHP IVEA VS+GG+DVK G N+FRFANRIPLLFE G DV TR ++R+NW+
Sbjct: 443 ASPALACGGHPLIVEACVSLGGRDVKPGFNVFRFANRIPLLFEGGADVATR-CVQRLNWT 501
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
+YKI++ DKIGVFVSIVSTKIPFKGT KEYIGD+ EIA AV AI+QC QL+ KIVR
Sbjct: 502 TYKIDKNNDKIGVFVSIVSTKIPFKGTSKEYIGDENAEIAEAVDKAIKQCAAQLRGKIVR 561
Query: 546 KIQDREQQERKRNLSR 561
++++ RK+ L++
Sbjct: 562 AQALKDRRARKKALTK 577
>gi|449019845|dbj|BAM83247.1| Type II DNA topoisomerase VI subunit B [Cyanidioschyzon merolae
strain 10D]
Length = 705
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/566 (50%), Positives = 372/566 (65%), Gaps = 27/566 (4%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
+ +SPAEFFAENKNIAGFDN G+SLYTTVRELVEN LD+AE+ LP + I +EE+
Sbjct: 5 FRVRSPAEFFAENKNIAGFDNDGRSLYTTVRELVENGLDAAEAAEVLPSIRIRLEELRGK 64
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKN--------------- 127
F + +GL R D +Y D+ ++ + A R ++ +A N
Sbjct: 65 DFQARLGLGGIVRRDFSMYKDFHEQRKLAQGKAAALRRKKRRAPNVGPEGTSEPADEPQL 124
Query: 128 ------AALGKKVKEPSATKGAKG-----RGEASFYRVTCKDNGKGMPHDDIPNMFGRVL 176
A L E + G G+A F+ V+ +DNG G+ H+ IP MFG VL
Sbjct: 125 EAPSDGATLETCTDEAATADAGAGVDEPQSGDAQFFIVSVQDNGTGIEHERIPQMFGIVL 184
Query: 177 SGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPH 236
+GTKY ++Q+RGKFGLG+KMAL+WSKMSTGLPI I SS S +S C LDIDI RN P
Sbjct: 185 AGTKYSVQQSRGKFGLGSKMALLWSKMSTGLPIRICSSTDSRQPLSLCMLDIDIARNKPR 244
Query: 237 VHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEK 296
V +H+K EN + G E+ V I GNW TYR+ IL Y+R MA+ITPYA+F F + +A K
Sbjct: 245 VLVHKKIENAIGFRGTEVSVTIRGNWKTYRTYILQYLRHMAIITPYAEFFFSYRGPIASK 304
Query: 297 NVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGT-LLQFLQHEFVNIGKSL 355
N + F+RR+D +PP P + KHHPSSV+ L+++ L+ T L+ FL +E +I +
Sbjct: 305 NFDLYFARRSDCVPPQPTQVKHHPSSVNQLVLQQLMNSVPASTKLIDFLANELSSISRDY 364
Query: 356 AERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIK 415
A+RL+ E+G FS + +V + + + +L RQA F PSG CLSPAGEYNLRLGIIK
Sbjct: 365 AKRLVCELGCSFSEETSVAEVKGNMLRHLLELLRQAHFLPPSGDCLSPAGEYNLRLGIIK 424
Query: 416 ELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVT 475
EL P++VAT++ V +GHPFIVE GVS GG VK G+N+FRFANRIPLLFE G DVVT
Sbjct: 425 ELSPEIVATHTEPVGVLDGHPFIVEVGVSFGGAKVKPGINVFRFANRIPLLFEGGNDVVT 484
Query: 476 RTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQC 535
RTA K I W++YKIN D++GVF SIVST+ PFKGTGKEYIG D + I +V+ AI QC
Sbjct: 485 RTATKLIPWTNYKINPITDRVGVFCSIVSTRCPFKGTGKEYIGADAEPIQKSVRHAIMQC 544
Query: 536 CIQLKSKIVRKIQDREQQERKRNLSR 561
C QL+ K+VRK +E+QERK+ LS+
Sbjct: 545 CQQLRIKLVRKSIQQERQERKKRLSK 570
>gi|219125348|ref|XP_002182945.1| type II DNA topoisomerase 6 subunit [Phaeodactylum tricornutum CCAP
1055/1]
gi|217405739|gb|EEC45681.1| type II DNA topoisomerase 6 subunit [Phaeodactylum tricornutum CCAP
1055/1]
Length = 682
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/546 (49%), Positives = 365/546 (66%), Gaps = 24/546 (4%)
Query: 25 QKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKF 84
QKSPAEFFAEN+ IAGFDN GKSLYT++RELVENSLD+ ESI ELP + I I+E + +F
Sbjct: 19 QKSPAEFFAENQAIAGFDNLGKSLYTSLRELVENSLDACESIHELPEISIEIKEYTQEEF 78
Query: 85 NSM--IGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
N++ + R++ D +L+ ET+K ++ + E+ + K+ K P
Sbjct: 79 NALDVMKTSPRKKRDMQLF---ETKKKDKKPPKEATDVDEITTVENSGKKRKKAP----- 130
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
+ +++++T KDNG GM H IPN+ GRVLSG+KYG++QTRGKFGLGAKMALIW+K
Sbjct: 131 -----QDAYFKLTVKDNGCGMSHSAIPNLLGRVLSGSKYGVRQTRGKFGLGAKMALIWAK 185
Query: 203 MSTGLPIEISSSMRSHNFI-----SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV 257
STG PI I +S R + S C LDIDI++N P + H R+N D W G E+ V+
Sbjct: 186 KSTGQPIRIMTSHRPDGGVAPERASACVLDIDIYKNAPRILEHTTRKNTDGWMGTEMSVL 245
Query: 258 IEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS-EVAEKNVTIRFSRRTDVMPPVPVET 316
I GNWTTY+S+I+ Y++Q+A+ITPYA +++ +++N+ +R+ RR+D MPP
Sbjct: 246 IAGNWTTYKSRIVQYLQQLAIITPYAVLELAYINISDSKRNLHVRYDRRSDQMPPPAKTI 305
Query: 317 KHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSL 376
KHHP+SV+ L+I+ LI T TL +FL E + LA RL+ E+G F M SL
Sbjct: 306 KHHPASVNNLVIQQLIQFTKTRTLFKFLSTELSTVSPPLARRLVTELG--FDESMPPSSL 363
Query: 377 TSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 435
++I R+ QL RQ + F P G CLSP GEYNL LGI K L PD++AT +EGH
Sbjct: 364 EDKEITRLVQLLRQVQLFKAPDGSCLSPLGEYNLNLGIRKVLEPDLIATSRDKPGAYEGH 423
Query: 436 PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
PF+VEA VS+GGK+VK+G+ + RFANRIPLLFE G DV TR A +I WS+YK++ +D+
Sbjct: 424 PFLVEAAVSLGGKEVKEGITVIRFANRIPLLFEGGADVATRVANTKIRWSNYKMDYKRDR 483
Query: 496 IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
IGVFVSIVSTK+PFKGT KEYIGDD EI +VK A+Q CC QL+ + ++ ++ Q R
Sbjct: 484 IGVFVSIVSTKVPFKGTSKEYIGDDATEIQQSVKRALQSCCQQLRGYLAKRSALKDAQTR 543
Query: 556 KRNLSR 561
K +++
Sbjct: 544 KSRMAK 549
>gi|223999337|ref|XP_002289341.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220974549|gb|EED92878.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 650
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/558 (49%), Positives = 369/558 (66%), Gaps = 29/558 (5%)
Query: 7 PKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESI 66
PKK SK + + KSPAEFFAEN++IAGFDNPGKSLYTT+RELVENSLD+ ES+
Sbjct: 3 PKKSSSK-----KDEIQQSKSPAEFFAENQSIAGFDNPGKSLYTTLRELVENSLDACESV 57
Query: 67 SELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAK 126
LP + + IEE+ + +FN M G V T + + + +A + ++
Sbjct: 58 DVLPDISVVIEEMTQDQFNEMRG------VPTSGGPGKKKKGVDG---SDDAAVGDAESG 108
Query: 127 NAALGKKVKEPSATKGAKGR--GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK 184
+ GK V E KGAK R G +++ VT +DNG GM HD IP++ GRVLSG+KYG++
Sbjct: 109 DKDNGKGVNE----KGAKKRRAGGDAYFLVTVRDNGCGMAHDAIPDLLGRVLSGSKYGVR 164
Query: 185 QTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRE 244
QTRGKFGLGAKMALIWSK STG+PI I +S +I IDI++N P + H++++
Sbjct: 165 QTRGKFGLGAKMALIWSKKSTGVPIRIKTSHVKGIYI------IDIYKNCPRIIEHKQKD 218
Query: 245 NKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEK-NVTIRFS 303
N + W G E+QV++ GNWTTY+S+++ Y++Q+A+ITPYA+ + + EK + +RF
Sbjct: 219 NTENWIGTEMQVLVSGNWTTYKSRVVQYLQQLAIITPYARLEMSYSNRSDEKKGMNLRFE 278
Query: 304 RRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
RR++ MP E KHHPSSV+ LL++ L+ + TLL+FL + I S+A+RLI +
Sbjct: 279 RRSEQMPSQAREVKHHPSSVNNLLVQQLLENSKSKTLLKFLTGDLSGISPSVAKRLIERL 338
Query: 364 GPEFSPKMAVKSLTSQQIVRIHQLFRQAK--FDDPSGGCLSPAGEYNLRLGIIKELHPDM 421
G F M+ + +QI R+ QL R F P GGCLSP GEYNL LGI K + P++
Sbjct: 339 GDAFEEDMSPAEMDDKQITRLVQLLRSTDDLFKSPDGGCLSPLGEYNLNLGIQKVVEPEI 398
Query: 422 VATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKR 481
+AT ++GHPFIVEA VS+GGK+ K+G+ + RFANRIPLLFE G DV TR A +
Sbjct: 399 IATARDKPGAYDGHPFIVEAAVSLGGKEAKEGITVVRFANRIPLLFEGGADVATRVANSK 458
Query: 482 INWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKS 541
I WSSYKI+ +DKIGVFVSIVSTK+PFKGTGKEYIGDD EI +VK A+Q CC QL+
Sbjct: 459 IKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRV 518
Query: 542 KIVRKIQDREQQERKRNL 559
+ ++ R+ +ERK L
Sbjct: 519 HLAKRNALRDVKERKSRL 536
>gi|428182551|gb|EKX51411.1| Top6B/Bin3 vegetative topoisomerase VIB [Guillardia theta CCMP2712]
Length = 617
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/537 (49%), Positives = 361/537 (67%), Gaps = 33/537 (6%)
Query: 25 QKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKF 84
QK+ AEFFAENK+ AGF++PGKSLYT++RELVENSLD+AE+I LP V I IEEI + F
Sbjct: 2 QKTAAEFFAENKHFAGFESPGKSLYTSIRELVENSLDAAEAIGVLPEVHIMIEEIKMATF 61
Query: 85 NSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAK 144
M G+ E++D LY + E A E+ A Q K A GKKV T
Sbjct: 62 RKMHGMDGSEKIDLDLYKNAE---------AGESSAP--QKKPA--GKKVSAKDMT---- 104
Query: 145 GRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204
F+++T DNG GM H++IP MFG VLSGTKYG++Q RGKFGLG+KM LIWSKMS
Sbjct: 105 ------FFKLTVTDNGCGMKHEEIPKMFGSVLSGTKYGVRQERGKFGLGSKMVLIWSKMS 158
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
TGLP++I SS S IS KLD+DIH N P VH H+K N W G++++V I G ++
Sbjct: 159 TGLPMKIRSSTGSTKPISVVKLDLDIHANAPKVHQHDKESNTIGWRGSQVEVTIGGEFSK 218
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVD 324
Y+ I+ Y+R+MAVITPYA+ K+ I SRR++ MPP P + K HPS++D
Sbjct: 219 YKGYIVKYLREMAVITPYAR----------SKSFQIIHSRRSENMPPPPCKAKVHPSALD 268
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRI 384
+++ LI ++ + LL+FL E ++ +LA+R+I E G EFS +M + S+ S +I +I
Sbjct: 269 NQMMENLINQSYQKVLLRFLTAELDSVDTNLAKRMIDEFGSEFSYEMPITSIDSSKIRKI 328
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
Q +FD PSG LSPAGEYNL LG++KE+ PD++AT + V +GHP IVEA VS
Sbjct: 329 VDKILQFEFDPPSGAVLSPAGEYNLHLGVMKEMKPDLIATSTPDVTVVDGHPVIVEAAVS 388
Query: 445 VGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
+GG+ K+G+ + RFANRIP+LF+ G DV +TA RINW SY++++ KIGV++SI S
Sbjct: 389 LGGRKAKEGITVHRFANRIPMLFQGGNDVSVKTANTRINWKSYRMDKNSHKIGVYISICS 448
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
TKIP+ G KEYIGD+ +++ AVK AI +CC+QLKS++ R+ + Q+ERK+NL +
Sbjct: 449 TKIPYGGPNKEYIGDENEDLQRAVKEAIMKCCLQLKSRLARQEAMKNQRERKKNLEK 505
>gi|298708631|emb|CBJ26118.1| DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit
B [Ectocarpus siliculosus]
Length = 626
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 277/570 (48%), Positives = 364/570 (63%), Gaps = 74/570 (12%)
Query: 22 ALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
A+K KSPAEFFA+N+NIAGFDN GKSLYTT+RELVENSLD+AESI LP + +TIEE +
Sbjct: 8 AVKSKSPAEFFADNQNIAGFDNAGKSLYTTIRELVENSLDAAESIGALPHISLTIEEFTE 67
Query: 82 SKFNSMIGLVDRERVDTKLYDDYETEKARERR---LAKEARAQELQAKNAALGKKVKEPS 138
+FN G+ +R+ VD L+ +K+ + L K A A+E A + +EPS
Sbjct: 68 EEFNEHRGMDNRDVVDAGLFKASGGKKSTSKATKALPKPAVAEEGSADDP------QEPS 121
Query: 139 ATKG--------------------AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSG 178
A G +KG + +YRV CKDNG GMPHD IP+M G VLS
Sbjct: 122 AAAGATAADLDPKEKKAKNDKKGRSKGDSHSLYYRVKCKDNGVGMPHDKIPDMLGVVLSS 181
Query: 179 TKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSH-----NFISFCKLDIDIHRN 233
+KYG++Q RGK+G+GAKMALIWSK STGLPI++ S S NF++ C LDIDI++N
Sbjct: 182 SKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVVSGCSSDVKDPPNFLTKCVLDIDIYKN 241
Query: 234 IPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEV 293
P VH H K N + W G E+ V + GNW TY+S++L Y++Q+A+ITPYA+ ++ S
Sbjct: 242 RPSVHEHVKLPNPEGWRGTEMTVCVSGNWQTYKSRVLQYLQQLAIITPYAELELEYHSHA 301
Query: 294 -AEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIG 352
+K++T + RR++ MPP+ E KHHP SV+ LL++ LI T L+ FL + +I
Sbjct: 302 NPKKDLTAVYRRRSEQMPPLAYEVKHHPGSVNNLLVQQLIHRTKCKDLVGFLMKDLSSID 361
Query: 353 KSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRL 411
+ L+ER+I E+G F PKM +LT + + R+ Q+ R K F P G CLSPAGEYNLR
Sbjct: 362 RPLSERIIAELGEGFHPKMQPSALTVKMVSRLTQMLRDVKRFKPPDGACLSPAGEYNLR- 420
Query: 412 GIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG 471
VK+G+N++RFANRIPLLFE G
Sbjct: 421 -------------------------------------QVKEGVNVYRFANRIPLLFEAGS 443
Query: 472 DVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSA 531
DVVTR AMKRINWSSYK++ +DKIGVFVS VSTKIPFKGT KEYIGDDT+EI AVK A
Sbjct: 444 DVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHA 503
Query: 532 IQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+QQCC QL++ ++R+ REQ+ERK+ L++
Sbjct: 504 LQQCCQQLRTHLLRRNALREQKERKKVLTK 533
>gi|397576182|gb|EJK50110.1| hypothetical protein THAOC_30957 [Thalassiosira oceanica]
Length = 671
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/568 (45%), Positives = 363/568 (63%), Gaps = 54/568 (9%)
Query: 8 KKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESIS 67
+KR S + + + KSPAEFFAEN++IAGFDN GKSLYTT+REL+ENSLD+ ES++
Sbjct: 5 RKRSGGSSGSKKDEVQQSKSPAEFFAENQSIAGFDNAGKSLYTTLRELIENSLDACESVN 64
Query: 68 ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKN 127
LP + + IEE+ +++FN G+ + + E+ R+ + K+ RA
Sbjct: 65 VLPDISVKIEEMTEAQFNKSRGVPNSQ------------EEKRDAEIEKKKRA------- 105
Query: 128 AALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTR 187
G +++ VT +DNG GM HD IP++ GRVLSG+KYG++QTR
Sbjct: 106 -------------------GGDAYFTVTVRDNGCGMAHDAIPDLLGRVLSGSKYGVRQTR 146
Query: 188 GKFGLGAKMALIWSKMSTGLPIEISSS----MRSHNFISFCKLD---------IDIHRNI 234
GKFGLGAKMALIWSK STG+PI + SS +R + + DI++N
Sbjct: 147 GKFGLGAKMALIWSKKSTGVPIRVKSSHVKGVRGGGGGNLLDDEGTRKIGPKPSDIYKNC 206
Query: 235 PHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEV- 293
P V H+++ N D W G EIQV + GNWTTY+S+++ Y+ Q+A+ITPYA+ + ++
Sbjct: 207 PRVLEHKQKTNSDEWIGTEIQVQVAGNWTTYKSRVVQYLHQLAIITPYARLEMAYTNQTD 266
Query: 294 AEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGK 353
A+KN + F RR+D MP E KHHP+SV+ LLI+ L+ T+ +LL+FL ++ I
Sbjct: 267 AKKNFDLNFDRRSDNMPAQAREVKHHPTSVNNLLIQQLLERTNSKSLLKFLTNDLSGITS 326
Query: 354 SLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK--FDDPSGGCLSPAGEYNLRL 411
S A++LI +G F M+ + L +QI R+ Q+ R+ F +P GGCLSP GEYNL L
Sbjct: 327 SAAKKLIERLGDSFDADMSPEELDDKQITRLVQVLRKTDDLFKNPDGGCLSPLGEYNLNL 386
Query: 412 GIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG 471
GI K + PD++AT ++GHPFIVEA VS+GG + K+G+ + RFANRIPLLFE G
Sbjct: 387 GIQKVIEPDVIATAREKPGSYDGHPFIVEAAVSLGGNNAKEGITVVRFANRIPLLFETGA 446
Query: 472 DVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSA 531
DV TR A +I WSSYKI+ ++KI VFVSIVSTK+PFKGTGKEYIGDD I ++VK A
Sbjct: 447 DVATRVANSKIKWSSYKIDHKREKITVFVSIVSTKVPFKGTGKEYIGDDIVPIQASVKKA 506
Query: 532 IQQCCIQLKSKIVRKIQDREQQERKRNL 559
+Q CC QL++ + ++ R+ +ERK L
Sbjct: 507 LQTCCQQLRAHLAKRNALRDVKERKSKL 534
>gi|167519843|ref|XP_001744261.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777347|gb|EDQ90964.1| predicted protein [Monosiga brevicollis MX1]
Length = 655
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/543 (46%), Positives = 339/543 (62%), Gaps = 30/543 (5%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
L+ +SPAEFFAENK+IAGFDNPGKSLYTT+RE VEN LD+AE I LP + +T+ +
Sbjct: 18 LQSRSPAEFFAENKSIAGFDNPGKSLYTTIREFVENGLDAAEEIRLLPSIAVTVTRVPNH 77
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
+ + +R + E LA +A A+N + KE A
Sbjct: 78 AISDLYVPSVLQRPE------------EEALLASQASTVPSPAQNTGDDGQPKEKKAKAK 125
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
E ++Y+V +DNG GMPH DIP M +VLSGTKY LKQ RG+FGLGAKMALIW+K
Sbjct: 126 GAKSEERAYYQVMVQDNGMGMPHKDIPGMLAKVLSGTKYTLKQARGRFGLGAKMALIWAK 185
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPH-VHLHEKRENKDRWHGAEIQVVIEGN 261
M++G+ +E+ S+ IS C LDID+H N P V H WHG I VVI+GN
Sbjct: 186 MTSGIALEVYSARPDSQSISHCVLDIDLHLNEPKGVEPHVLPAG---WHGTCIAVVIQGN 242
Query: 262 WT----TYRSKILHYMRQMAVITPYAQFLFKFVS----EVAEKNVTIRFSRRTDVMPPVP 313
W+ YR I+ YMR++AVITPYA+FL ++ + N+ + + RR+ V P +P
Sbjct: 243 WSDGHGAYRWNIIKYMRRLAVITPYAEFLLQYTDTDPVRAKQLNMKVLYPRRSQVTPELP 302
Query: 314 VETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAV 373
+ HPSSVDL+ ++ LI LL+FL+ F I A I +GP+F M
Sbjct: 303 RAIQPHPSSVDLVGVENLIRHFGHKPLLKFLKTAFAQINDKEARATIAGLGPQFDEDMLA 362
Query: 374 KSLTS----QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSA 429
SL + I R +L A + PS LSPAG YN+ LGI+KEL PD++ATY A
Sbjct: 363 GSLVGAFEEKIIPRSPKLVTHACWRSPSKDALSPAGTYNMYLGIMKELKPDLIATYVQPA 422
Query: 430 QVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTA--MKRINWSSY 487
V++GHPF+VEA VS+GG+ V G+N+FRFANRIPL+FE+ DV+T++A +K ++W Y
Sbjct: 423 SVYQGHPFVVEAAVSLGGRTVTPGINVFRFANRIPLIFEERSDVITKSAHELKSVSWGYY 482
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKI 547
K+N++ DKIGVFVSIVSTKIPFKGTGKE+I DD I VK+A+QQCC QLK+KI ++
Sbjct: 483 KLNKSTDKIGVFVSIVSTKIPFKGTGKEFITDDIPAIKKDVKNALQQCCSQLKTKIAKQR 542
Query: 548 QDR 550
D+
Sbjct: 543 DDK 545
>gi|323449196|gb|EGB05086.1| hypothetical protein AURANDRAFT_66743 [Aureococcus anophagefferens]
Length = 470
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/505 (41%), Positives = 307/505 (60%), Gaps = 58/505 (11%)
Query: 17 TPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
P E+ +++KS AEFF EN+NIAGFDNPGKSLYTT+RELVENSLD+AES+ P VE+T+
Sbjct: 2 APRET-VQRKSAAEFFTENQNIAGFDNPGKSLYTTIRELVENSLDAAESLGVPPRVELTV 60
Query: 77 EEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKE 136
+E+ + + + G+ +R+D +L+ + K ++ R K+ E +
Sbjct: 61 QELSQREIDGERGMQAMDRIDEELFAEAAGAKKKKGRKKKDDDEDEDPDRA--------- 111
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKM 196
S+ KGA +YRVTC+DNG GM IP+ GRVLSG+KYG++QTRGKFGLGAKM
Sbjct: 112 -SSKKGA-----MLYYRVTCRDNGCGMRRAQIPDALGRVLSGSKYGVRQTRGKFGLGAKM 165
Query: 197 ALIWSKMSTGLPIEISSSMRSHN---------------FISFCKLDIDIHRNIPHVHLHE 241
ALIWSK S+G P+++ +++ + +S LDIDI +N P+V
Sbjct: 166 ALIWSKKSSGFPVKVRTAVAASGAGDDYDREAGPPGAAHVSQVTLDIDIQKNEPNVLEDS 225
Query: 242 KRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAE--KNVT 299
+ N +RW G E++VV+ G W Y+S+I Y+RQ+A+ITPYA +F + + K+V
Sbjct: 226 QAPNPERWRGLEMEVVVGGAWGAYKSRIATYLRQLAIITPYAALSLQFRAADGQGKKDVA 285
Query: 300 IRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAE 357
+RF RR+ +PP P +T +HPS+V+ LL++ L+ T++ TL+ FL E +I LA+
Sbjct: 286 LRFERRSTKVPPCPKKTGYHPSAVNELLLQQLLRRTTQKTLVGFLARGGELSSISGPLAK 345
Query: 358 RLIGEMGPEFSPKMAVKSL--TSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGII 414
R++ E G F ++L ++++ R+ +L R+ K F PSG CLSP GEYNLRLGI
Sbjct: 346 RVVAECGGGFRDDDDPRALGDDAKKVSRLARLLREVKLFPPPSGDCLSPVGEYNLRLGIE 405
Query: 415 KELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVV 474
KEL P+ ++ A + LN+ RFANRIPLLFE G DVV
Sbjct: 406 KELRPESACPWAARAS--------------------RTTLNVHRFANRIPLLFEAGADVV 445
Query: 475 TRTAMKRINWSSYKINQTQDKIGVF 499
+R A ++ W +YKI+ ++K+G+F
Sbjct: 446 SRVAKTKVKWGAYKIDLKKEKVGIF 470
>gi|325967842|ref|YP_004244034.1| DNA topoisomerase VI subunit beta [Vulcanisaeta moutnovskia 768-28]
gi|323707045|gb|ADY00532.1| DNA topoisomerase VI, B subunit [Vulcanisaeta moutnovskia 768-28]
Length = 536
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 181/527 (34%), Positives = 277/527 (52%), Gaps = 77/527 (14%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N+ IAGF NP +++Y T+RELVENSLD+ E+ LP +
Sbjct: 13 SPAEFFRRNREIAGFSNPTRAIYQTIRELVENSLDATETFKILPSI-------------- 58
Query: 87 MIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGR 146
K+Y DY A ++R
Sbjct: 59 ------------KIYIDY----------ANQSR--------------------------- 69
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
S+ + +DNG G+P D+IPN+FGRV +KY +KQ RG FGLGAKM +++++ +T
Sbjct: 70 ---SWISIYVEDNGIGIPGDEIPNVFGRVFYSSKYRIKQHRGIFGLGAKMVVLYAQSTTN 126
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
PI + S+ N I +L IDI +N P + ENK WHG I+VV+EG+W+ +
Sbjct: 127 TPILVRSAPLRSNVIYEYQLMIDITKNEPVIMSQRTMENKYGWHGTAIRVVLEGDWSKAK 186
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y+R+ A++ PYA+F+ + E + I+ R T MP P E HP SVD+
Sbjct: 187 RRVEEYLRRTAMVAPYAEFVLRGPDE----DDAIKIPRVTTKMPDPPKEGLPHPKSVDVE 242
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
LIK LI + LL+FL F +G+++A+ I +G P M V L + +++
Sbjct: 243 LIKQLIQKNPDLPLLEFLTENFDGVGETIAKTFIDFVG--LQPDMPVGKLINDELINFVT 300
Query: 387 LFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
R+ + P LSP GE L G+ L P++V T + + G+PFIVEA ++
Sbjct: 301 KMREFNGWRRPRADWLSPIGEDILAEGVKFVLRPEVVFTVTRKPSSYMGNPFIVEAALAW 360
Query: 446 GGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
GG + I+RFAN++PL++++G DV+ R + I+W+ YK+ + + + V I S
Sbjct: 361 GGAIEPSDNPIIYRFANKVPLIYDEGNDVI-RKIVDEIDWTQYKV-KFPAPLAIVVHICS 418
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
TKIP+ GKE I + EI S V++AI++ +L+ I RK +++E
Sbjct: 419 TKIPYASAGKEAIA-EVPEIESEVRNAIREVARKLRLYITRKEKEQE 464
>gi|307595996|ref|YP_003902313.1| DNA topoisomerase VI subunit B [Vulcanisaeta distributa DSM 14429]
gi|307551197|gb|ADN51262.1| DNA topoisomerase VI, B subunit [Vulcanisaeta distributa DSM 14429]
Length = 539
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 180/527 (34%), Positives = 272/527 (51%), Gaps = 77/527 (14%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N+ IAGF NP +++Y T+RELVENSLD+ E+ LP +
Sbjct: 13 SPAEFFRRNREIAGFSNPTRAVYQTIRELVENSLDATETFKILPSI-------------- 58
Query: 87 MIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGR 146
K+Y DY + R
Sbjct: 59 ------------KIYIDY-------------------------------------ADQSR 69
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
S Y +DNG G+P D+IPN+FGRV +KY +KQ RG FGLGAKM +++++ +T
Sbjct: 70 NWVSIY---VEDNGIGIPGDEIPNVFGRVFYSSKYRIKQHRGIFGLGAKMVVLYAQSTTN 126
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
PI + S+ + I +L IDI +N P + ENK WHG I+VV+EG+W +
Sbjct: 127 TPILVRSAPLKSDVIYEYQLMIDITKNEPVIVSQRTLENKYAWHGTAIKVVLEGDWPKAK 186
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y+R+ A++ PYA+F+ + E + I+ R T MP P E HP SVD+
Sbjct: 187 RRVEEYLRRTAMVAPYAEFVLRGPDE----DDAIKIPRITTKMPDPPEEGLPHPKSVDVE 242
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
LIK LI LL+FL F +G+++A+ + +G P M V L + ++V
Sbjct: 243 LIKQLIQRDPSMPLLEFLVENFDGVGETIAKTFLDFVG--LPPDMPVGKLVNDELVNFVT 300
Query: 387 LFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
R+ + P LSP GE L G+ L P++V T + + G+PFIVEA ++
Sbjct: 301 KMREFNGWRRPRADWLSPIGEDILAEGVKFILRPEVVFTVTRKPSSYMGNPFIVEAALAW 360
Query: 446 GGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
GG + I+RFAN++PL++++G DVV R + I+W+ YK+ + + + V I S
Sbjct: 361 GGSIEPSDKPIIYRFANKVPLIYDEGNDVV-RKIVDEIDWTQYKV-KFPASLAIVVHICS 418
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
TKIP+ GKE I + EI S V++A+++ +L+ I RK +++E
Sbjct: 419 TKIPYASAGKEAIA-EVPEIESEVRNAVREVARKLRLYITRKEKEQE 464
>gi|302348020|ref|YP_003815658.1| type 2 DNA topoisomerase 6 subunit B [Acidilobus saccharovorans
345-15]
gi|302328432|gb|ADL18627.1| Type 2 DNA topoisomerase 6 subunit B [Acidilobus saccharovorans
345-15]
Length = 556
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 177/539 (32%), Positives = 271/539 (50%), Gaps = 74/539 (13%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
S AEFF++NK +AGF NP ++LY TVRELVEN+LD+ +S LP V+I I+
Sbjct: 18 SVAEFFSKNKELAGFSNPTRALYQTVRELVENALDATDSHGILPEVKIYIK--------- 68
Query: 87 MIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGR 146
E E E R A+
Sbjct: 69 ------------------EVEPENEERPAR------------------------------ 80
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
Y V+ +DNG G+P + FG+VL +KY ++QTRG +GLG K +++S+ +TG
Sbjct: 81 -----YEVSVEDNGIGVPKTVMAQAFGKVLFSSKYVIRQTRGMYGLGVKAVVLYSQTTTG 135
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
PI + SS NF+ + + IDI +N P V + + + WHG ++EG+WT +
Sbjct: 136 RPITVVSSQEDSNFVYYQNIKIDIKKNEPMVVEDGQLDKRSSWHGTIASAIVEGDWTRAK 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
KI+ Y+R+ A+I PYA+ V + F R T MP P E K HP VDL
Sbjct: 196 PKIIEYVRRTAIIAPYAELWL-----VTPEGEIYFFPRATKKMPKPPREAKPHPHGVDLE 250
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTSQQIVRI 384
++ ++ T TLL FL+ EF IG A + +G P+ +PK +K + + +
Sbjct: 251 QVRSMLMSTQAETLLDFLKEEFQGIGDKTATEFLRHVGLKPDINPKTLLKKEKLKDLEAL 310
Query: 385 HQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
R + F P LSP GE + LG+ + P+ V + A+ ++GHPFIVE G+
Sbjct: 311 VTALRNYRGFKGPRSDYLSPIGEELIELGLTRMFKPEWVKAVTRPARAYQGHPFIVEVGI 370
Query: 444 SVGGKDVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSI 502
+ GG Q I RFAN+IPLL+E+ D V+ + I+W Y + Q ++ V V +
Sbjct: 371 AYGGAIQPQEEPILLRFANKIPLLYEEKED-VSYKVLTNIDWGRYGV-QEPYQLAVLVHV 428
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
STK+P+KG GKE I + E+ S +++ I + L+ I RK ++ +E+ ++++
Sbjct: 429 ASTKVPYKGVGKESIS-EIPELESEIRNGIHEVARSLRIYISRKAREELAKEKIVSIAK 486
>gi|296242525|ref|YP_003650012.1| DNA topoisomerase VI subunit B [Thermosphaera aggregans DSM 11486]
gi|296095109|gb|ADG91060.1| DNA topoisomerase VI, B subunit [Thermosphaera aggregans DSM 11486]
Length = 532
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 236/416 (56%), Gaps = 15/416 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+YRVT +DNG G+P D +PN FG+VL +KY LKQTRG +GLG KMA+++ +M+TG P+E
Sbjct: 73 YYRVTVEDNGIGLPPDVVPNAFGKVLFSSKYVLKQTRGMYGLGVKMAVLYGQMTTGRPVE 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDR-WHGAEIQVVIEGNWTTYRSKI 269
+ +S + I + KL ID+++N P V L K R WHG + + +EG+W + KI
Sbjct: 133 VITSKQGFKRIYYFKLRIDVNKNEP-VILERGTWRKSRDWHGTIVSITLEGDWARAKPKI 191
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
+ Y+ + V+TPYA +F + +N I + R ++P PVE K HP VDL ++K
Sbjct: 192 MEYLSRSVVVTPYANIIF-----LTPENEIIYYPRAISILPRPPVEVKPHPFGVDLEMMK 246
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
L ++ T+ L F ++G+S A ++ G P SL +++RI +
Sbjct: 247 QLKELSASDTVKDLLIKNFQSVGESTATEVLNRAG--VDPSKPAGSLGEDELLRIVNAIK 304
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ PS +SP G + G+ + P+ V + QV+ GHPFIVEAGV+ GG
Sbjct: 305 GFENLRPPSAKAISPLGREIIVTGLSRMFKPEFVEAVTRRPQVYHGHPFIVEAGVAYGGG 364
Query: 449 DVKQGLN---IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
+ ++ I R+AN+IPLL+++G DV T + INW++Y I + V V + ST
Sbjct: 365 TPQSEMDKPVILRYANKIPLLYDEGSDVTTFVIKEDINWANYSIAFPAPLV-VLVHVCST 423
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
KIPFKG GKE I D EI ++ A+ + +LK +VRK ++ E + R L++
Sbjct: 424 KIPFKGVGKESIA-DVPEIRREIRLALMEVLRRLKIYLVRKAREEEVKRRVVLLAK 478
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
SPAEFF + + IAGF NP ++LY TVREL EN+LD+ ++ LP V+I+I+ +
Sbjct: 15 SPAEFFYKYREIAGFSNPVRALYQTVRELYENALDATDAHGILPDVKISIKRV 67
>gi|159041784|ref|YP_001541036.1| DNA topoisomerase VI subunit B [Caldivirga maquilingensis IC-167]
gi|157920619|gb|ABW02046.1| DNA topoisomerase VI, B subunit [Caldivirga maquilingensis IC-167]
Length = 528
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/403 (36%), Positives = 233/403 (57%), Gaps = 12/403 (2%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y + +DNG G+P ++IPN+FG++ +KY +KQ RG FGLGAKM +++++ ++G+P+
Sbjct: 73 LYSIYVEDNGIGIPEEEIPNVFGQIFYSSKYKIKQHRGIFGLGAKMVVLYAQSTSGMPVR 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
++SSM+ +I ++ ID +N P +H H + ENK WHG ++VV+EGNW +S+I
Sbjct: 133 VTSSMKGSQYIYTYEISIDTVKNKPVIHSHVRVENKYGWHGTAVKVVLEGNWQYAKSRIE 192
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y + A+ITPYA+ + + N +RF+R T +MP PVE HPSS+DL +K
Sbjct: 193 EYFTRTAMITPYAEIIL-----IEPNNEVLRFNRITTIMPKPPVEGLPHPSSIDLESLKQ 247
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
LI+ S L+ FL+ F IG + +G S VK L+ ++ + + RQ
Sbjct: 248 LISRNSDIPLIDFLKENFDGIGDETVREFMKTVGIRASKH--VKRLSESELRLLAEKMRQ 305
Query: 391 AK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
+ P LSP GE L GI+ L P+ V + + GHPFIVEA ++ GG
Sbjct: 306 FNGWRRPRADWLSPIGEKILANGILHVLKPEAVFVTTRKPSSYSGHPFIVEAAIAWGGSI 365
Query: 450 VKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIP 508
+ I +R+AN++PLL ++G DV+ R + ++WS YK+ + + V V + STKIP
Sbjct: 366 MPVDKPILYRYANKVPLLQDEGSDVI-RHVIDEVDWSQYKV-KFPAPLAVVVHVCSTKIP 423
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
+ GKE I D EI V+ A+++ +LK + RK +++E
Sbjct: 424 YASAGKEAIA-DVPEIEKEVRLAVREVARKLKVYLARKEKEQE 465
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 19 NESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
++ A + +PAE+F NK IAGF +P +++Y TVREL+EN+LD+ E+ LP ++ +I
Sbjct: 7 SDVAFESLTPAEWFRRNKEIAGFSSPSRAMYQTVRELIENALDATENHGILPSIKASIRY 66
Query: 79 IGKSK 83
+ K K
Sbjct: 67 VDKDK 71
>gi|429217559|ref|YP_007175549.1| DNA topoisomerase VI subunit B [Caldisphaera lagunensis DSM 15908]
gi|429134088|gb|AFZ71100.1| DNA topoisomerase VI, B subunit [Caldisphaera lagunensis DSM 15908]
Length = 555
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 149/414 (35%), Positives = 241/414 (58%), Gaps = 12/414 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y V+ +DNG G+P ++I N FG+VL +KY ++QTRG +GLG K A+++S+M+TG P+ I
Sbjct: 82 YEVSVEDNGIGVPPNEIANAFGKVLYSSKYVIRQTRGMYGLGIKAAILYSQMTTGQPVFI 141
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SSM S I + KL IDI +N P + + K+ WHG ++ + +EG+WT + KI+
Sbjct: 142 ISSMDSSENIYYRKLLIDIKKNEPVIIEEGQLIKKNNWHGTKVYLTLEGDWTRAKPKIIE 201
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++++A+I+PYA+ +F+ N F R T +P P E K HP +D+ +K +
Sbjct: 202 YIKRIALISPYAEIIFE-----TPDNEIFYFPRVTKKIPKPPSEAKPHPHGIDIEQLKAM 256
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTSQQIVRIHQLFR 389
I+ T TLL+F+ EF IG+ A + + MG P +PK ++ S+ + + R
Sbjct: 257 ISFTKTKTLLEFMTEEFQTIGEITARKFLESMGLDPNMNPKSLIEKGNSKLLQTLSTGLR 316
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
K F P LSP GE + +G+ + +P+ V + A+ +EGHPFIVEAG++ GG
Sbjct: 317 TYKGFRPPRSEYLSPIGEELIEVGLKRLFNPEWVKAITRQAKAYEGHPFIVEAGIAYGGN 376
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
+ + R+AN+IPLL+E+ D V+ + INW Y I + + V V + STKI
Sbjct: 377 IPPSEEPVLLRYANKIPLLYEERED-VSYKVVSSINWKIYNIEEPMPLV-VLVHVASTKI 434
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
P+KG GKE + + E+ S +++AIQ+ L+ I ++ + +E+ +S+
Sbjct: 435 PYKGVGKESLS-EVSELESEIRNAIQEIARSLRLYISKRNSEHILREKIVTISK 487
>gi|389860617|ref|YP_006362857.1| DNA topoisomerase VI subunit B [Thermogladius cellulolyticus 1633]
gi|388525521|gb|AFK50719.1| DNA topoisomerase VI subunit B [Thermogladius cellulolyticus 1633]
Length = 529
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 236/415 (56%), Gaps = 13/415 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
FYRVT +DNG G+P D +PN FGRVL +KY L+QTRG +GLG KMA+++ +M+TG PIE
Sbjct: 71 FYRVTVEDNGIGIPPDIVPNAFGRVLFSSKYVLRQTRGMYGLGVKMAVLYGQMTTGRPIE 130
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ +S R + I F K+ IDI++N P V + WHG + + IEG+W +++I
Sbjct: 131 VITSKREYRRIYFFKIRIDINKNEPVVLERGSWRKQRDWHGTIVSLTIEGDWGKAKARIK 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+ + A +TPYA V + VT+ + R + MP P E K HP VDL ++K
Sbjct: 191 EYINRTATVTPYAN----IVMYTPDNEVTL-YKRVIETMPRPPKEVKPHPYGVDLEMLKM 245
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR-IHQLFR 389
+I + T+L+ L F ++G+ A+ L+ + G P ++L ++R I+ +
Sbjct: 246 IIESGKEPTILEVLVENFQSVGEVTAKDLLSKAG--IDPSSNPRNLKEDDLLRLINTMKS 303
Query: 390 QAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
+F PS +SP G ++ G+ + P+ V + +EGHPFIVEAG++ GGK
Sbjct: 304 YNQFKPPSSSAISPLGVEVIKAGLTRMFEPEFVDAVTRKPSTYEGHPFIVEAGIAYGGKV 363
Query: 450 VKQGLN---IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTK 506
+ + R+AN+IPLL+++G DV+T + I W +Y + ++ + V + STK
Sbjct: 364 PLSEADKPILLRYANKIPLLYDEGSDVITSVVKEDIAWDNYMV-AFPAQLVLLVHVCSTK 422
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+PFKG GKE I D E+ +K AI + +L+ + K ++ E Q + +L++
Sbjct: 423 VPFKGVGKESIA-DVPEVRREIKLAISEVARRLRGYLTAKQKELETQRKVVHLAK 476
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
K SPAEFF + K IAGF NP ++LY TVRELVEN+LD+ +S LP +++ I+
Sbjct: 10 KAISPAEFFYKYKEIAGFANPARALYQTVRELVENALDATDSHGILPDIKVVIQ 63
>gi|229582219|ref|YP_002840618.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus Y.N.15.51]
gi|259534001|sp|C3NHT6.1|TOP6B_SULIN RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|228012935|gb|ACP48696.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus Y.N.15.51]
Length = 530
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYANRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>gi|118431160|ref|NP_147433.2| DNA topoisomerase VI subunit B [Aeropyrum pernix K1]
gi|150421695|sp|Q9YE64.2|TOP6B_AERPE RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|116062484|dbj|BAA79682.2| type II DNA topoisomerase VI subunit B [Aeropyrum pernix K1]
Length = 568
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 237/424 (55%), Gaps = 11/424 (2%)
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G++GRG Y VT +DNG G+P + FG+VL +KY ++QTRG +GLG K A+++
Sbjct: 85 EGSEGRGGRPRYTVTVEDNGIGVPVTSMAMAFGKVLFSSKYVIRQTRGMYGLGVKAAILY 144
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
+M+ G P+E+ S+ + ++ KL ID+ RN P + + + WHG + + +EG
Sbjct: 145 GQMTAGTPVEVYSATKGSQYVYMMKLVIDVQRNEPRILERGEWNKRGSWHGTRVTLSLEG 204
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+W+ +SKIL Y+++ AVI PYA+ + E + + F R T +P P E+K HP
Sbjct: 205 DWSRAKSKILEYIKRTAVIAPYAEIIL----ETPDGEIYY-FPRSTRKLPKPPRESKPHP 259
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTS 378
VD+ +K ++ T TL +FL EF +IG A+ + + G P+ P+ +K
Sbjct: 260 HGVDIEQLKSMLRSTRASTLREFLVKEFQSIGDKTAQDFLEKYGLDPDLKPRELLKKGRD 319
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
+ + R+ + F P LSP G + +G+ + +P+ V S S + + GHPFI
Sbjct: 320 KLLRRLADALMEYPFRAPKSDYLSPIGSDIIEIGLRRMFNPEWVGAVSRSPKAYRGHPFI 379
Query: 439 VEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
VE G++ GG + + + R+AN+IPLL+E+ D V+ + INW Y ++ +
Sbjct: 380 VEVGIAYGGGIEARSEPLLLRYANKIPLLYEERED-VSYKVVSSINWRQYNVDFPAPLV- 437
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
V V I STK+P+KG GKE + D EI + +++A+Q+ +L+ + RK ++ E R
Sbjct: 438 VLVHIASTKVPYKGVGKESV-SDVPEIEAEIRNAVQEVARRLRLYLSRKAREEEAIRRSV 496
Query: 558 NLSR 561
L++
Sbjct: 497 TLAK 500
>gi|227827528|ref|YP_002829308.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.14.25]
gi|227830215|ref|YP_002831995.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus L.S.2.15]
gi|229579030|ref|YP_002837428.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus Y.G.57.14]
gi|229584731|ref|YP_002843233.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.16.27]
gi|238619685|ref|YP_002914511.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.16.4]
gi|284997638|ref|YP_003419405.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus L.D.8.5]
gi|385773197|ref|YP_005645763.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus HVE10/4]
gi|385775831|ref|YP_005648399.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus REY15A]
gi|259533989|sp|C3N5B3.1|TOP6B_SULIA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|259533992|sp|C4KGX9.1|TOP6B_SULIK RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|259533995|sp|C3MPN7.1|TOP6B_SULIL RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|259533998|sp|C3MYN1.1|TOP6B_SULIM RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|259534004|sp|C3NDW7.1|TOP6B_SULIY RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|227456663|gb|ACP35350.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus L.S.2.15]
gi|227459324|gb|ACP38010.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.14.25]
gi|228009744|gb|ACP45506.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus Y.G.57.14]
gi|228019781|gb|ACP55188.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.16.27]
gi|238380755|gb|ACR41843.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.16.4]
gi|284445533|gb|ADB87035.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus L.D.8.5]
gi|323474579|gb|ADX85185.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus REY15A]
gi|323477311|gb|ADX82549.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus HVE10/4]
Length = 530
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>gi|71042168|pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
gi|71042169|pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
gi|71042170|pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
gi|71042171|pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
gi|114794402|pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 68 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 127
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 128 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 187
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 188 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 242
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 243 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 300
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 301 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 360
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 361 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 419
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 420 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 467
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 10 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 69
Query: 87 MIGLVD 92
+ +VD
Sbjct: 70 KVNVVD 75
>gi|28373795|pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 70 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 129
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 130 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 189
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 190 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 244
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 245 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 302
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 303 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 362
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 363 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 421
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 422 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 469
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 12 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 71
Query: 87 MIGLVD 92
+ +VD
Sbjct: 72 KVNVVD 77
>gi|320101389|ref|YP_004176981.1| DNA topoisomerase VI subunit B [Desulfurococcus mucosus DSM 2162]
gi|319753741|gb|ADV65499.1| DNA topoisomerase VI, B subunit [Desulfurococcus mucosus DSM 2162]
Length = 529
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 232/416 (55%), Gaps = 15/416 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
FYR+T +DNG G+P D +P+ FGRVL +KY L+QTRG +GLG KMA+++ +M+TG P+E
Sbjct: 70 FYRITVEDNGIGIPPDVVPDAFGRVLFSSKYVLRQTRGMYGLGVKMAVLYGQMTTGRPVE 129
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPH-VHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+ +S I + KL ID+++N P + R+N+D WHG + + IEG+W + KI
Sbjct: 130 VITSKSGFKRIYYFKLRIDVNKNEPVIIERSSWRKNRD-WHGTIVSITIEGDWGRAKQKI 188
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+ + A++TPYA + + + + + R D +P PVE K HP VDL L+K
Sbjct: 189 KEYLFKTAIVTPYANIV-----ALTPDDEIVYYPRVVDKLPSPPVEVKPHPHGVDLELLK 243
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I+ + ++ + L F +IG++ A ++ + G P LT +++ + R
Sbjct: 244 QIISSHNYSSVEELLIKGFQSIGEATARLILQQAG--VDPAKPPVDLTENELLSLVNTLR 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
K PS +SP G + G+ P+ S Q ++GHPF+VEAGV+ GGK
Sbjct: 302 SMKDIRAPSTKAISPLGSEIIEAGLKHVFQPEFTYAVSRRPQAYQGHPFVVEAGVAYGGK 361
Query: 449 DVKQGLN---IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
+ I R+AN+IPLL+++G DV T + I W +Y I I + V + ST
Sbjct: 362 TPLSENDKPIILRYANKIPLLYDEGSDVTTLVVKEDIGWDNYMITFPA-PIAILVHVCST 420
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
KIPFKG GKE I D E+ +K A+ +L+ + +K ++ E ++R +L++
Sbjct: 421 KIPFKGVGKESIA-DVPEVRREIKLALMDVLRELRKYLSKKAREEELKKRAEHLAK 475
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
SPAEFF + + IAGF +P +++Y TVRELVEN+LD+ ++ LP V+I+I+ +
Sbjct: 12 SPAEFFYKYREIAGFSSPARAIYQTVRELVENALDATDAHGILPDVKISIKRV 64
>gi|3024756|sp|O05207.1|TOP6B_SULSH RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|167745001|pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
gi|167745003|pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
gi|167745005|pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
gi|167745007|pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
gi|1926403|emb|CAA71604.1| type II DNA topoisomerase subunit B [Sulfolobus shibatae B12]
Length = 530
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 241/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KDEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + + I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVENIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>gi|15897847|ref|NP_342452.1| DNA topoisomerase VI subunit B [Sulfolobus solfataricus P2]
gi|284175656|ref|ZP_06389625.1| DNA topoisomerase VI subunit B [Sulfolobus solfataricus 98/2]
gi|384434401|ref|YP_005643759.1| DNA topoisomerase VI subunit B [Sulfolobus solfataricus 98/2]
gi|21264094|sp|Q97ZF0.1|TOP6B_SULSO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|13814150|gb|AAK41242.1| DNA topoisomerase VI subunit B (top6B) [Sulfolobus solfataricus P2]
gi|261602555|gb|ACX92158.1| DNA topoisomerase VI, B subunit [Sulfolobus solfataricus 98/2]
Length = 530
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + + KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPVNSKRLYTFKLKIDINKNEPIIVERGSVENNTGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVT-YYPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I + T+ +FL EF +IG + A++++ +G P VK+LT ++I R+ + F+
Sbjct: 244 MINNLKRDYTIKEFLMSEFQSIGDTTADKILELVG--LRPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAG++ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFTASITRKPKAYQGHPFIVEAGIAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKLYLSEK---RKEQEAKKKL 468
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +S+
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDESRQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>gi|305662508|ref|YP_003858796.1| DNA topoisomerase VI subunit B [Ignisphaera aggregans DSM 17230]
gi|304377077|gb|ADM26916.1| DNA topoisomerase VI, B subunit [Ignisphaera aggregans DSM 17230]
Length = 528
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 226/407 (55%), Gaps = 12/407 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
YR++ KDNG G+P IP FG+VL +KY L+QTRG FGLGAKM +++ +M+ G P EI
Sbjct: 71 YRISVKDNGIGIPEKYIPEAFGKVLFSSKYVLRQTRGLFGLGAKMVILYGQMTVGEPAEI 130
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
S+ + I ++ ID+ N P + N WHG ++V IEG+W+ + KIL
Sbjct: 131 ISAAINSRRIYSYRIMIDVRENKPIIVSKGVWPNNTGWHGTMVKVAIEGDWSRAKQKILD 190
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+++ A++TPYA +FK + R T+ +PP P ETK HP VDL LIK +
Sbjct: 191 YIKRTAIVTPYANIVFK-----TPDGEIYTYLRVTETIPPPPRETKPHPHGVDLELIKTM 245
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ- 390
I+ET L+ F+ EF +G +AER + + G F P K+L+ +++ + + ++
Sbjct: 246 ISETKAQRLIDFISEEFQGVGNVIAERFLTKYG--FDPSKDPKTLSKEELELLVKALKEF 303
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-D 449
+F P LSP G +++G+ L P+ V + V+EGH IVE G++ GG
Sbjct: 304 NEFRKPRADHLSPIGAELIKIGLNSILKPEFVDAVTRKPVVYEGHSIIVEVGIAYGGSIQ 363
Query: 450 VKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPF 509
+ + + R+AN+IPLL+++ DV + + I+WS Y I + + V I TKIP+
Sbjct: 364 PSEEVVLLRYANKIPLLYDEKSDVAWKVVSENIDWSYYGI-VFPAPLAILVHICGTKIPY 422
Query: 510 KGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
KG GKE I + I ++ ++Q LK + RK Q E+ RK
Sbjct: 423 KGVGKESIA-EVPVIEKEIEEGVRQVARSLKLYLARK-QKEEEMMRK 467
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
SPAEFF NK IAGF NP ++LY VRELVEN+LD+ ++ LP +E++IE
Sbjct: 12 SPAEFFYRNKEIAGFANPARALYQAVRELVENALDATDAHGILPNIEVSIE 62
>gi|28373805|pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
gi|28373806|pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
gi|28373807|pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
gi|28373808|pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
gi|28373809|pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
gi|28373810|pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 240/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+ PIE
Sbjct: 71 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGVKAAVLYSQXHQDKPIE 130
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 131 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 191 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 245
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 246 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 303
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 304 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 363
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q + V V + STKI
Sbjct: 364 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQXVVXVHLCSTKI 422
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 423 PYKSAGKESIA-EVEDIEKEIKNALXEVARKLKQYLSEK---RKEQEAKKKL 470
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 13 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 72
Query: 87 MIGLVD 92
+ +VD
Sbjct: 73 KVNVVD 78
>gi|71042167|pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
gi|71042172|pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
gi|71042173|pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 240/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+ PIE
Sbjct: 68 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGVKAAVLYSQXHQDKPIE 127
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 128 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 187
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 188 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 242
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 243 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 300
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 301 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 360
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q + V V + STKI
Sbjct: 361 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQXVVXVHLCSTKI 419
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 420 PYKSAGKESIA-EVEDIEKEIKNALXEVARKLKQYLSEK---RKEQEAKKKL 467
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 10 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 69
Query: 87 MIGLVD 92
+ +VD
Sbjct: 70 KVNVVD 75
>gi|297527443|ref|YP_003669467.1| DNA topoisomerase VI, B subunit [Staphylothermus hellenicus DSM
12710]
gi|297256359|gb|ADI32568.1| DNA topoisomerase VI, B subunit [Staphylothermus hellenicus DSM
12710]
Length = 531
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 230/397 (57%), Gaps = 17/397 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+Y++T +DNG G+P +P FGRVL +KY L+QTRG FGLG K+A+++ +M+TG P+E
Sbjct: 73 YYKITVEDNGIGIPPHIVPKAFGRVLFSSKYVLRQTRGMFGLGVKVAVLYGQMTTGRPVE 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHV-HLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
I +S I + KL IDI++N P + R+N+D WHG+ + + IEG+W+ +S++
Sbjct: 133 IITSQPGLRRIYYYKLRIDINKNQPIILERGSWRKNRD-WHGSIVSLTIEGDWSRSKSRV 191
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+++ AV+TPYA +F + + + R D +P P K HP VDL L+K
Sbjct: 192 KDYIKRTAVVTPYANIVF-----MTPEGEIYYYKRVIDKLPSPPKRVKPHPRGVDLELLK 246
Query: 330 GLIAETSK-GTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
I ET K TL L F +IG A++LI + G P + ++ + ++R+ +
Sbjct: 247 R-IRETGKYTTLYNLLTKSFQSIGDVTAKKLISQAG--LDPNIDPMKISDKDLLRLVNIM 303
Query: 389 RQA-KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
++ K+ P LSP G ++ G+ + P+ V + ++GHPFIVEAG++ GG
Sbjct: 304 KKYNKYRPPKAQALSPLGPDVIKAGLTRIYEPEFVEATTRKPSAYQGHPFIVEAGIAYGG 363
Query: 448 KDVKQG---LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
K + N+ R+AN+IPLL+++G DV+T + INW +Y ++ I V V I S
Sbjct: 364 KVPRSPPDKPNLLRYANKIPLLYDEGSDVITAVIKEDINWDNYLVHLPA-PIVVLVHICS 422
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKS 541
TK+PFKG GKE I D +I +K AI + +L++
Sbjct: 423 TKVPFKGVGKESIA-DVSDIRREIKLAISEVARKLRN 458
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
K S AEFF + K IAGF NP ++LY TVRELVEN+LD+ ++ LP ++ITIE+
Sbjct: 12 KAISAAEFFYKYKEIAGFANPARALYQTVRELVENALDATDAHGILPNIKITIEK 66
>gi|385805794|ref|YP_005842192.1| DNA topoisomerase VI subunit B [Fervidicoccus fontis Kam940]
gi|383795657|gb|AFH42740.1| DNA topoisomerase VI subunit B [Fervidicoccus fontis Kam940]
Length = 561
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/433 (35%), Positives = 245/433 (56%), Gaps = 29/433 (6%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+++ V+ +DNG G+P + IP+ FGR+L +KY +QTRG +GLGAKMA+++ +++TG P
Sbjct: 80 NYFTVSVEDNGIGIPSNIIPDAFGRILYSSKYKFRQTRGMYGLGAKMAILYGQITTGKPF 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSK 268
EI SS N I + KL +DI +N P V E K WHG +V IEG+W R
Sbjct: 140 EIYSSTSRSNKIFYYKLSVDIRKNEPIVFEEGAWEKKTSWHGTIAKVTIEGDWNKRTRDY 199
Query: 269 ILHYMRQMAVITPYA-------QFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS 321
I Y+++ A+I PYA +F + E++ + + R TD +P P ETK HP
Sbjct: 200 ISVYVKRTAIIAPYADITLIMPKFNGEQEGNGEEESEIVCYKRVTDKLPVPPKETKPHPL 259
Query: 322 SVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQI 381
+DL ++K I+E+ T+ FL F IG+ AE ++ G +F K+L ++I
Sbjct: 260 GIDLEMLKMSISESKNKTIKDFLMKNFQRIGEKKAEEILKIAGIDFD--RNPKNLNDKEI 317
Query: 382 VRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEA 441
+++ + F PS LSP GE +++G+ + L+P+ V + + + GHPFIVEA
Sbjct: 318 EALYKSIKSVDFISPSPDPLSPIGEELIKIGLKQVLNPEFVDAITRKPKSYGGHPFIVEA 377
Query: 442 GVSVGGK----------DVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAM-KRINW- 484
G++ GGK D +G + + R+AN+IPLL+++ D++ NW
Sbjct: 378 GIAYGGKLSENLDEIARDSIKGQSGPFIALLRYANKIPLLYDEKADLIWSVVNPDDFNWK 437
Query: 485 SSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV 544
++YK++ + D + V V I STK+P+KG GKE I +EI V++A+Q+ +L+ IV
Sbjct: 438 NTYKLDPS-DIVVVLVHIASTKVPYKGVGKESIA-QVEEIRKEVEAAVQELARRLRKYIV 495
Query: 545 RKIQDREQQERKR 557
+K + E +E+ R
Sbjct: 496 KKRKREEAEEKFR 508
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 17 TPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
T N + +Q SP+EFF NK IAGF +P ++LY TVRE VENSLD+ E LP V I+I
Sbjct: 12 TENVESFRQLSPSEFFYRNKEIAGFSSPSRALYQTVREFVENSLDATEVHGILPNVVISI 71
>gi|126465879|ref|YP_001040988.1| DNA topoisomerase VI subunit B [Staphylothermus marinus F1]
gi|126014702|gb|ABN70080.1| DNA topoisomerase VI, B subunit [Staphylothermus marinus F1]
Length = 531
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 227/399 (56%), Gaps = 17/399 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+Y++T +DNG G+P +P FGRVL +KY L+QTRG FGLG K+A+++ +M+TG P+E
Sbjct: 73 YYKITVEDNGIGIPPHIVPEAFGRVLFSSKYVLRQTRGMFGLGVKVAVLYGQMTTGRPVE 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHV-HLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
I +S I + KL IDI++N P + R+N+D WHG + + IEG+W+ R ++
Sbjct: 133 IITSQPGLRRIYYYKLRIDINKNQPIILERGSWRKNRD-WHGTIVSLTIEGDWSRARFRV 191
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+ + AV+TPYA +F + + + R D +P P + K HP VDL L+K
Sbjct: 192 KDYILRTAVVTPYANIVF-----MTPEGEIYYYKRAIDKLPSPPKQVKPHPYGVDLELLK 246
Query: 330 GLIAETSK-GTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR-IHQL 387
I ET K TL L F ++G A LI + G P + ++ + +++ ++ +
Sbjct: 247 R-IRETGKYATLYDLLIKSFQSVGDVTARTLISQAG--LDPSIDPMKISDKDLLKLVNTM 303
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
+ K+ P+ LSP G ++ G+ + P+ V + ++GHPFIVEAG++ GG
Sbjct: 304 KKYDKYRPPTAQALSPLGPDIIKAGLTRIYEPEFVEATTRKPSAYQGHPFIVEAGIAYGG 363
Query: 448 K---DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
K N+ R+AN+IPLL+++G DV+T + INW +Y ++ I V V I S
Sbjct: 364 KVPMSPSDKPNLLRYANKIPLLYDEGSDVITAVIKEDINWDNYLVHLPAPII-VLVHICS 422
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
TK+PFKG GKE I D EI +K AI + +L++ +
Sbjct: 423 TKVPFKGVGKESIA-DVPEIRKEIKLAISEVARKLRNHL 460
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
K S AEFF + K IAGF NP ++LY T+RELVEN+LD+ ++ LP +++TIE+
Sbjct: 12 KAISAAEFFYKYKEIAGFANPARALYQTIRELVENALDATDAHGILPNIKVTIEK 66
>gi|390939026|ref|YP_006402764.1| DNA topoisomerase VI subunit B [Desulfurococcus fermentans DSM
16532]
gi|390192133|gb|AFL67189.1| DNA topoisomerase VI, B subunit [Desulfurococcus fermentans DSM
16532]
Length = 530
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 231/415 (55%), Gaps = 13/415 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
FYR+T +DNG G+P D +P+ FGRVL +KY L+QTRG +GLG KMA+++ +M+TG P+E
Sbjct: 71 FYRITVEDNGIGIPPDVVPDAFGRVLFSSKYVLRQTRGMYGLGVKMAVLYGQMTTGRPVE 130
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ +S I + KL ID++RN P + WHG + + IEG+W + KI
Sbjct: 131 VITSKPGFKRIYYFKLRIDVNRNEPVIIERGSWRKNREWHGTIVSITIEGDWGRAKPKIK 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+ + A++TPYA + + + I + R D +P P+E K HP VDL L+K
Sbjct: 191 EYLFKTAIVTPYANIV-----ALTPDDEIIYYPRIIDKIPRPPLEVKPHPHGVDLELLKQ 245
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+I+ + ++ + L F +IG++ A+ ++ + G P V L+ +++ + +
Sbjct: 246 IISSHNYTSVEELLIKGFQSIGEATAKSILQQAG--IDPGKPVSELSDNELLSLVNTLKS 303
Query: 391 AK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
K PS +SP G + G+ + P+ V S Q ++GHPFIVEAG++ GGK
Sbjct: 304 MKDIRAPSIKAISPLGSDVIIAGLKRVFQPEFVYAVSRRPQAYQGHPFIVEAGIAYGGKT 363
Query: 450 VKQGLN---IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTK 506
+ I R+AN+IPLL+++G DV T + I+W Y ++ I + V + STK
Sbjct: 364 PMSDDDKPIILRYANKIPLLYDEGSDVTTMVVKEDISWDHYMVSFPA-PIAILVHVCSTK 422
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
IPFKG GKE I D E+ +K + +LK + +K ++ E ++R +L++
Sbjct: 423 IPFKGVGKESIA-DVPEVRKEIKLVLMDVLRELKKYLSKKAKEEELKKRAEHLAK 476
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 16 KTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEIT 75
+TP E + SPAEFF + + IAGF NP +++Y TVRELVEN+LD+ ++ +P ++I+
Sbjct: 3 ETPVEK-YRAISPAEFFYKYREIAGFSNPARAIYQTVRELVENALDATDAHGIMPDIKIS 61
Query: 76 IEEI 79
I ++
Sbjct: 62 IRKV 65
>gi|218884530|ref|YP_002428912.1| DNA topoisomerase VI subunit B [Desulfurococcus kamchatkensis
1221n]
gi|218766146|gb|ACL11545.1| Type 2 DNA topoisomerase VI subunit B [Desulfurococcus
kamchatkensis 1221n]
Length = 530
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 231/415 (55%), Gaps = 13/415 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
FYR+T +DNG G+P D +P+ FGRVL +KY L+QTRG +GLG KMA+++ +M+TG P+E
Sbjct: 71 FYRITVEDNGIGIPPDVVPDAFGRVLFSSKYVLRQTRGMYGLGVKMAVLYGQMTTGRPVE 130
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ +S I + KL ID++RN P + WHG + + IEG+W + KI
Sbjct: 131 VITSKPGFKRIYYFKLRIDVNRNEPVIIERGSWRKNREWHGTIVSITIEGDWGRAKPKIK 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+ + A++TPYA + + + I + R D +P P+E K HP VDL L+K
Sbjct: 191 EYLFKTAIVTPYANIV-----ALTPDDEIIYYPRIIDKIPRPPLEVKPHPHGVDLELLKQ 245
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+I+ + ++ + L F +IG++ A+ ++ + G P + L+ +++ + +
Sbjct: 246 IISSHNYTSVEELLIKGFQSIGEATAKSILQQAG--IDPGKPISELSDNELLSLVNTLKS 303
Query: 391 AK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
K PS +SP G + G+ + P+ V S Q ++GHPFIVEAG++ GGK
Sbjct: 304 MKDIRAPSIKAISPLGSDVIIAGLKRVFQPEFVYAVSRRPQAYQGHPFIVEAGIAYGGKT 363
Query: 450 VKQGLN---IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTK 506
+ I R+AN+IPLL+++G DV T + I+W Y ++ I + V + STK
Sbjct: 364 PMSDDDKPIILRYANKIPLLYDEGSDVTTMVVKEDISWDHYMVSFPA-PIAILVHVCSTK 422
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
IPFKG GKE I D E+ +K + +LK + +K ++ E ++R +L++
Sbjct: 423 IPFKGVGKESIA-DVPEVRKEIKLVLMDVLRELKKYLSKKAKEEELKKRAEHLTK 476
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 16 KTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEIT 75
+TP E + SPAEFF + + IAGF NP +++Y TVRELVEN+LD+ ++ +P ++I+
Sbjct: 3 ETPVEK-YRAISPAEFFYKYREIAGFSNPARAIYQTVRELVENALDATDAHGIMPDIKIS 61
Query: 76 IEEI 79
I ++
Sbjct: 62 IRKV 65
>gi|315426179|dbj|BAJ47823.1| DNA topoisomerase VI subunit B [Candidatus Caldiarchaeum
subterraneum]
gi|343485021|dbj|BAJ50675.1| DNA topoisomerase VI subunit B [Candidatus Caldiarchaeum
subterraneum]
Length = 520
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 224/416 (53%), Gaps = 17/416 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YR+ DNG G+P D IP+ F VL G+KYG KQ+RG FGLG MAL++ +++T
Sbjct: 75 ERGVYRLRVVDNGVGVPGDKIPSAFATVLYGSKYGFKQSRGTFGLGGTMALLYGQITTNK 134
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
P +I SS + +L ID+ N P + EK+ + W G ++ +E ++ R+
Sbjct: 135 PAKIMSSTDGKT-LHIYELMIDVVENRPRIISSEKKPSPGGWRGTSVEFSLEADYPGARA 193
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
KIL Y++ A++ P+A F + K + R + +P P ET HP VD+ +
Sbjct: 194 KILDYIKHTAIVNPHASLTF-----IDSKGRLYHYPRMVEKVPEPPRETLPHPVGVDVEM 248
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTSQQIVRIH 385
+ ++ ET LL FL F IG A+ ++ G PE SP + L+ +Q+ +
Sbjct: 249 MSRMLLETKARNLLTFLTTSFQKIGPKTAKEVLELAGLKPETSP----RKLSHEQVTALV 304
Query: 386 QLF-RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
F R KF P LSP G+ L GI + +PD V + GHPFIVEA V+
Sbjct: 305 DAFKRYDKFRPPDPTPLSPVGKDFLEAGIRRIFNPDFVYVVQREPSSYSGHPFIVEAAVA 364
Query: 445 VGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIV 503
GG V + + +FRFAN+IPLL+++ DV + ++I+WS+YK+ + + VF SI
Sbjct: 365 YGGTIPVTETIMLFRFANKIPLLYDERADVAWKVVEEKIDWSNYKVPKPA-PLAVFTSIC 423
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
STK+P+K GKE I D EI + A+++C LK + R I+ RE ++ +L
Sbjct: 424 STKVPYKTVGKEAIA-DRPEIERELTMALRECGRNLKLYLSR-IEKREAAAKRLSL 477
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
SP+EFF +N++IAGF +P +SLY ++RELVENSLD+AE LP V I + E
Sbjct: 20 SPSEFFYKNRDIAGFSSPARSLYMSIRELVENSLDAAEMGRILPEVLIELGE 71
>gi|146304517|ref|YP_001191833.1| DNA topoisomerase VI subunit B [Metallosphaera sedula DSM 5348]
gi|259533984|sp|A4YHK7.1|TOP6B_METS5 RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|145702767|gb|ABP95909.1| DNA topoisomerase VI, B subunit [Metallosphaera sedula DSM 5348]
Length = 531
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 236/417 (56%), Gaps = 16/417 (3%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YR+T +DNG G+P +P+ FGRVL +KY L+QTRG +GLG K A+++S+M
Sbjct: 66 EKEIYRLTVEDNGIGIPPHVVPDAFGRVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQDK 125
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
PIEI+++ + I KL ID+ +N P ++ N +HG + + I G+W +S
Sbjct: 126 PIEITTAPLNSKRIYSFKLKIDVTKNEPIIYERGSVNNDTGYHGTSVSMYILGDWMRAKS 185
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
++ Y+++ +ITPYA+F FK E NV + + R T+ MP P E K HP VD+ L
Sbjct: 186 RVYEYIKRTYIITPYAEFYFK----DPEGNVVL-YPRLTNKMPVPPKEVKPHPYGVDIEL 240
Query: 328 IKGLIAETSKGTLL-QFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
+K +I+ + T + +FL EF ++G+ A +I G P V+ LT Q+ ++
Sbjct: 241 LKNMISRQKEDTTVKEFLVKEFQSVGEKTALSVIEMAG--LDPDKRVQKLTDDQLSKLVD 298
Query: 387 LFRQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ F PS LS G + LG+ + +P+ V + + ++GHPFIVE G++
Sbjct: 299 AMKNFPDFRPPSPEALSTIGADLIELGLKQTFNPEYVGAVTRRPKAYQGHPFIVEVGLAY 358
Query: 446 GGKDVK--QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIV 503
GG D++ + + R+AN+IPL++++ DVV + ++ I+W Y I Q + V V +
Sbjct: 359 GG-DIQPSEEPTVLRYANKIPLIYDEKSDVVWK-VVEEIDWKRYGIEDEQLPLVVMVHLC 416
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
STK+P+K GKE I D +EI +++ I + LK+ + K +E++ RKR L+
Sbjct: 417 STKVPYKSAGKESIA-DVEEIEKEIRNGIMEASRSLKTFMTEK--RKEEEARKRLLT 470
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP +++Y +RELVEN+LD+ + LP +++ IE + K
Sbjct: 11 SPAEFFKRNPELAGFSNPARAMYQALRELVENALDATDVHEILPSIKVIIERTSQEK 67
>gi|374325957|ref|YP_005084157.1| DNA topoisomerase VI subunit B [Pyrobaculum sp. 1860]
gi|356641226|gb|AET31905.1| DNA topoisomerase VI subunit B [Pyrobaculum sp. 1860]
Length = 526
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 232/411 (56%), Gaps = 15/411 (3%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS 213
V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++++ +T P+ + S
Sbjct: 69 VYAEDNGIGIPGNEIPNVFGRVFYSSKYRIKQHRGVFGLGLKMVVLYAQSTTNKPVLVRS 128
Query: 214 SMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYM 273
+ + I ++ ID + N P + + NK RWHG ++V +EGNW + +I Y+
Sbjct: 129 ATLKSDKIFEYQIMIDTNSNSPIILDRREYPNKYRWHGTAVKVYLEGNWLASKKRIEDYL 188
Query: 274 RQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIA 333
R+ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ +K +I
Sbjct: 189 RRTAIIAPYAEIIFK------GPDLELWLKRRTTKLPPAPKEGLPHPRSVDVDTLKQMIQ 242
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK- 392
E+ TL +FL F +G+ A+ + G F+P M V++LT +++VR+ + +Q +
Sbjct: 243 ESRGLTLQEFLMENFDAVGEGTAKAFLEWAG--FNPNMKVRALTPEELVRLVEKMKQYEG 300
Query: 393 FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQ 452
+ P LSPAG L +G L + V + + + GHPFIVEA V+ GG+ +
Sbjct: 301 WRRPRSDWLSPAGAELLEIGAKAILGAEAVFAVTRKPESYGGHPFIVEAAVAWGGQ-IPP 359
Query: 453 GLN--IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFK 510
G + R+AN+IPLL+++G D V R + NW +YK+ + + V + + STKIP+
Sbjct: 360 GDRPVLLRYANKIPLLYDEGAD-VARKVVDEFNWQNYKV-KFPAPLAVIIHVCSTKIPYA 417
Query: 511 GTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
GKE I + EI ++ A++ +L+ + RK ++ E R L++
Sbjct: 418 SAGKEAIA-EVPEIEKEMRLALRDAAKKLRLYLSRKEKEMEMLNRYITLAK 467
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF NP ++LY T+REL ENSLD+ E+ LP + + +
Sbjct: 10 AEWFRRNRELAGFHNPTRALYQTIRELTENSLDATETYGILPTILLRV 57
>gi|330834338|ref|YP_004409066.1| DNA topoisomerase VI subunit B [Metallosphaera cuprina Ar-4]
gi|329566477|gb|AEB94582.1| DNA topoisomerase VI subunit B [Metallosphaera cuprina Ar-4]
Length = 531
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 235/416 (56%), Gaps = 14/416 (3%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YR++ +DNG G+P +P+ FGRVL +KY L+QTRG +GLG K A+++S+M
Sbjct: 66 EKEIYRLSVEDNGIGIPPHVVPDAFGRVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQDK 125
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
PIEIS++ + I KL IDI +N P ++ N+ +HG + + + G+W +S
Sbjct: 126 PIEISTAPLNSKRIYTFKLKIDISKNEPVIYERGSVNNEIGYHGTTVTMYLLGDWIRAKS 185
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+I Y+++ +ITPYA+F FK E N+T + R T+ MP P E K HP VD+ L
Sbjct: 186 RIYEYVKRTYIITPYAEFYFK----DPEGNMTF-YPRLTNKMPAPPKEVKPHPYGVDIEL 240
Query: 328 IKGLIAETSKGTLL-QFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
+K +I+ + T + +FL EF ++G+ A +I G P V+ L Q+ ++
Sbjct: 241 LKNMISRQKEDTTVKEFLVKEFQSVGEKTALNVIEMAG--LDPDKKVQKLPDDQLSKLVD 298
Query: 387 LFRQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ F PS LS G + LG+ + +P+ V + + ++GHPFIVE G++
Sbjct: 299 AMKNFPDFRPPSPEALSIIGADLIELGLKQTFNPEYVGAVTRKPKAYQGHPFIVEVGIAY 358
Query: 446 GGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
GG + + R+AN+IPL++++ DVV + ++ ++W Y I + Q + V V + S
Sbjct: 359 GGGIQPSEEPTVLRYANKIPLIYDEKSDVVWK-VVEEVDWKRYGIEEEQPPLVVTVHLCS 417
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
TK+P+K GKE I D +EI +++ I + LK+ +V K +E++ RKR L+
Sbjct: 418 TKVPYKSAGKESIA-DVEEIEKEIRNGIMEASRSLKTFMVEK--RKEEEARKRLLT 470
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP +++Y +RELVEN+LD+ + LP ++I +E + K
Sbjct: 11 SPAEFFKRNPELAGFSNPARAMYQALRELVENALDATDIHQILPSIKIIVERTSQEK 67
>gi|156937878|ref|YP_001435674.1| DNA topoisomerase VI subunit B [Ignicoccus hospitalis KIN4/I]
gi|156566862|gb|ABU82267.1| DNA topoisomerase VI, B subunit [Ignicoccus hospitalis KIN4/I]
Length = 553
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 220/410 (53%), Gaps = 15/410 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+T DNG G+P D IP FGR+L +KY +QTRG +GLG K A+++++ +TG P
Sbjct: 93 IYRITVDDNGIGVPQDKIPYAFGRMLYSSKYVERQTRGTYGLGVKAAVLYAQKTTGEPAT 152
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ SS K+ +I N P V WHG + V+IEGNW RSK++
Sbjct: 153 VISSPIKDKMTYRFKVSTNISTNEPDVKERGSWTKSGDWHGTRVSVIIEGNWRRARSKVV 212
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+R+ A++ PYA ++ + IR+ RRT MP P E K HP +D+ +K
Sbjct: 213 EYVRRTAIVAPYAD-----ITLITPDGTLIRYPRRTKEMPKPPKEVKPHPLGIDIETMKR 267
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+ T+ TLLQ L EF +G A+ ++ G E P + K LT +QI + ++
Sbjct: 268 IAQLTTAKTLLQMLTTEFQAVGAKTAKAILSMAGLE--PDLEPKKLTEEQIKALVNAMKE 325
Query: 391 ----AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
++ PS LSP GE +++G+ L+P+ V S + GHPF+VE G++ G
Sbjct: 326 YGTTKRYKAPSKEALSPIGEKLIKIGLKSMLNPEFVTAVSRRPSSYSGHPFVVEVGIAYG 385
Query: 447 GK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
G+ + R+AN+ PLL+ + DV + + +NW +Y+++ + V V + ST
Sbjct: 386 GEIPPSDAPVLLRYANKTPLLYNERNDVSWK-VVSELNWKNYEVSFPAPLV-VLVHVAST 443
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
K+PFK K+ I D EI + ++ A+Q+ +LK I++K ++ E E+
Sbjct: 444 KVPFKDVSKDTIA-DVPEIEAEIRLALQEAARRLKRFIIKKRKEEELAEK 492
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
E K PAEFF N + GFDN ++++ TV+E+++NSLD+ E+ LP + I IE +
Sbjct: 12 EERFKAIGPAEFFFRNIELTGFDNYTRAIFQTVKEMLDNSLDATETHGILPRITIVIERL 71
>gi|15921560|ref|NP_377229.1| DNA topoisomerase VI subunit B [Sulfolobus tokodaii str. 7]
gi|28380202|sp|Q971T2.1|TOP6B_SULTO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|15622346|dbj|BAB66338.1| DNA topoisomerase VI subunit B [Sulfolobus tokodaii str. 7]
Length = 532
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 222/398 (55%), Gaps = 15/398 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P +PN FG+VL +KY L+QTRG +GLG K A+++S+M P+E
Sbjct: 68 IYKVNVEDNGIGIPPHIVPNAFGKVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQERPVE 127
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ +S + I F KL ID+ +N P + N+ WHG + + + +W + KI
Sbjct: 128 VVTSPINSKRIYFFKLKIDVVKNEPIILQKTSVVNEKNWHGTSVTLYLYADWQRAKQKIY 187
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +I+PYA+F FK N I + R TD +P P E K HP VD+ LIK
Sbjct: 188 EYVKKTYIISPYAEFFFK-----DPDNNVIYYKRLTDKIPEPPKEVKPHPYGVDIELIKF 242
Query: 331 LIAETSKGTLLQ-FLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I + K ++ FL +EF +IG A++++ EM + LT ++I R+ ++ +
Sbjct: 243 MIVKKDKPVPVRDFLINEFQSIGDVTADKIL-EMA-KLPKDKKTTELTDEEISRLVEVMK 300
Query: 390 QAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
KFDD PS LS GE ++LG+ +P+ + + ++GHPFIVEAG++ G
Sbjct: 301 --KFDDFRPPSAEALSVIGEDLIKLGLKSIFNPEFAEAITRKPKAYQGHPFIVEAGIAYG 358
Query: 447 GKDVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
G I R+AN+IPL++++ DV+ + + ++W Y I + Q + V V + ST
Sbjct: 359 GAIQPSPEPIVLRYANKIPLIYDEKSDVIWKVVTEEMDWKRYGIEEEQPPLVVMVHLCST 418
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
K+P++ GKE I D +EI +K A+ +LK I
Sbjct: 419 KVPYRSAGKESIA-DVEEIEKEIKLALMDVARKLKKYI 455
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP ++LY TVRELVEN+LD+ + + LP ++I IE + K
Sbjct: 10 SPAEFFKRNPELAGFSNPARALYQTVRELVENALDATDVHNILPSIKIIIELVDPQK 66
>gi|70607074|ref|YP_255944.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius DSM 639]
gi|449067313|ref|YP_007434395.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius N8]
gi|449069583|ref|YP_007436664.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius Ron12/I]
gi|68567722|gb|AAY80651.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius DSM 639]
gi|449035821|gb|AGE71247.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius N8]
gi|449038091|gb|AGE73516.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius Ron12/I]
Length = 532
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 233/415 (56%), Gaps = 20/415 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P +PN FG+VL +KY L+QTRG +GLG K A+++S+M P+E
Sbjct: 69 IYKVNVEDNGIGIPPHVVPNAFGKVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQDKPLE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I F +L ID+ +N P + N WHG + + + +W ++K+
Sbjct: 129 IYTSPLNSKRIYFFRLKIDVTKNEPVIMERYSISNDKGWHGTSVSIYLLADWQRSKAKVY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +I PY++ +F+ E NV + F R T +P P E K HP VD+ LIK
Sbjct: 189 EYVKRTYIIAPYSEIVFR----DPEGNV-LYFQRLTTKLPKPPEEVKPHPYGVDIELIKF 243
Query: 331 LIAETSKGT-LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+IA+ K + FL EF ++G A++++ E+ + S + +LT ++I R+ ++ +
Sbjct: 244 MIAKIDKPLDIRDFLVKEFQSVGDVTADKIL-ELS-KISKNKKITNLTDEEISRLVEVMK 301
Query: 390 QAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
FDD PS LS G + L + K +P+ V+ + + ++GHPFIVEAGV+ G
Sbjct: 302 T--FDDFRPPSAEALSVIGSDLIELSLQKVFNPEFVSAITRRPKAYQGHPFIVEAGVAYG 359
Query: 447 G--KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVS 504
G + L + R+AN+IPL++++ DV+ + + I+W Y + Q ++ V V + S
Sbjct: 360 GGIPAATEPL-VLRYANKIPLIYDEKSDVIWKVISEEIDWKRYGVETDQYQLVVMVHLCS 418
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
TK+P+K GKE I D +EI +K AI LK + K R++QE K+ L
Sbjct: 419 TKVPYKSAGKESIA-DVEEIEKEIKLAIMDVARNLKKYLTEK---RKEQEAKKKL 469
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 18 PNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
P E SPAEFF N +AGF NP ++LY TVREL+EN+LD+ + + LP ++I+IE
Sbjct: 2 PQEEKYSSISPAEFFKRNPELAGFSNPARALYQTVRELIENALDATDVHNLLPSLKISIE 61
Query: 78 EIGKSK 83
+ + K
Sbjct: 62 LVDQQK 67
>gi|119872357|ref|YP_930364.1| DNA topoisomerase VI subunit B [Pyrobaculum islandicum DSM 4184]
gi|119673765|gb|ABL88021.1| DNA topoisomerase VI, B subunit [Pyrobaculum islandicum DSM 4184]
Length = 528
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 232/419 (55%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
+G AS Y +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++S+ +T
Sbjct: 67 KGWASVY---VEDNGIGIPGNEIPNVFGRVFYSSKYKIKQHRGVFGLGLKMVVLYSQSTT 123
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
P+ + SS + I ++ ID + N P + + NK +WHG ++V +EGNW
Sbjct: 124 NKPVYVRSSTIKSDKIYEYQIMIDTNNNSPIILDRREYPNKYKWHGTAVKVYLEGNWPAA 183
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
+ +I Y+++ A+I PYA+ + K ++ + RRT +PP P E HP SVD+
Sbjct: 184 KKRIEDYLKRTAIIAPYAEIILK------SPDLELWLKRRTTKLPPPPKEGLPHPKSVDV 237
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+K ++ E+ +LL+FL F +G+ A+ + G F+P +LT ++IVR+
Sbjct: 238 DTVKQMLLESRNMSLLEFLTENFDAVGEGTAKAFLEWAG--FNPNTKTTALTPEEIVRLV 295
Query: 386 QLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
+ +Q + + P LSP G L +G L + V + + + GHPFIVE V+
Sbjct: 296 EKMKQYEGWRRPRADWLSPVGSELLEIGAKAILGAEAVFAVTRKPESYSGHPFIVEVAVA 355
Query: 445 VGGK--DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSI 502
GG+ V + L + R+AN+IPLL+++G D V R + NW +YKI + + V I
Sbjct: 356 WGGQIPPVDKPL-LLRYANKIPLLYDEGAD-VARKIVDEFNWQNYKI-KFPAPLAVITHI 412
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
STKIP+ GKE I + EI ++ A++ +L+ + RK ++ E + +L++
Sbjct: 413 CSTKIPYASAGKEAIA-EVPEIEKEIRLALRDVAKKLRLYLSRKEKEMELLNKYISLAK 470
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF NP ++LY T+RELVENSLD+ E+ LP + I +
Sbjct: 13 AEWFRRNRELAGFHNPARALYQTIRELVENSLDATETYGILPNIYIRV 60
>gi|18313187|ref|NP_559854.1| DNA topoisomerase VI subunit B [Pyrobaculum aerophilum str. IM2]
gi|28380201|sp|Q8ZVM0.1|TOP6B_PYRAE RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|18160701|gb|AAL64036.1| DNA topoisomerase VI (type II ) subunit b [Pyrobaculum aerophilum
str. IM2]
Length = 527
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 231/411 (56%), Gaps = 15/411 (3%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS 213
V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++S+ +T P+ + S
Sbjct: 69 VYAEDNGIGIPGNEIPNVFGRVFYSSKYKIKQHRGVFGLGLKMVVLYSQSTTNKPVLVRS 128
Query: 214 SMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYM 273
+ + I ++ ID + N P + + N+ +WHG ++V +EGNW + +I Y+
Sbjct: 129 ATLKSDKIYEYQIMIDTNSNSPIILDRREYPNRYKWHGTAVKVYLEGNWLAAKKRIEDYL 188
Query: 274 RQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIA 333
++ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ +K +I
Sbjct: 189 KRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTLKQMIQ 242
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK- 392
E+ TLL+FL F +G+ A+ + G F+P V +LT +++V++ +Q +
Sbjct: 243 ESRGLTLLEFLMENFDAVGEGTAKAFLEWAG--FNPNAKVTALTPEELVKLVDKMKQYEG 300
Query: 393 FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK--DV 450
+ P LSPAG L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 301 WRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVEAAVAWGGQIPPA 360
Query: 451 KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFK 510
+ L + R+AN+IPLL+++G D V R + NW +YK+ + + V + + STKIP+
Sbjct: 361 DKPL-LLRYANKIPLLYDEGAD-VARKVVDEFNWQNYKV-KFPAPLAVIIHVCSTKIPYA 417
Query: 511 GTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
GKE I + EI +K A++ +L+ + RK ++ E + +L++
Sbjct: 418 SAGKEAIA-EVPEIEKEMKLALRDAAKKLRLYLSRKEKEMEMLNKYISLAK 467
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF NP ++LY T+REL ENSLD+ E+ LP + + +
Sbjct: 10 AEWFRRNRELAGFHNPTRALYQTIRELTENSLDATETYGILPTIYLRV 57
>gi|126459555|ref|YP_001055833.1| DNA topoisomerase VI subunit B [Pyrobaculum calidifontis JCM 11548]
gi|126249276|gb|ABO08367.1| DNA topoisomerase VI, B subunit [Pyrobaculum calidifontis JCM
11548]
Length = 526
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 230/413 (55%), Gaps = 15/413 (3%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
S+ V +DNG G+P D+IPN+FGRV +KY +KQ RG FGLG KM +++++ +T P+
Sbjct: 67 SWVSVYAEDNGIGIPGDEIPNVFGRVFYSSKYRIKQHRGVFGLGLKMVVLYAQSTTNKPV 126
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+ S+ + I ++ ID ++N P + + N+ +WHG ++V +EGNW + +I
Sbjct: 127 YVRSATVKSDKIYEYQIMIDTNKNSPIILDRREYPNRQKWHGTAVKVYLEGNWLGAKKRI 186
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+++ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ +K
Sbjct: 187 EEYIKRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTLK 240
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I + TLL+FL F +G+ A+ + G F+P V LT +++VR+ + +
Sbjct: 241 QMIQASRGMTLLEFLTENFDAVGEGTAKAFLEWAG--FNPNAKVAGLTPEELVRLVEKMK 298
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
Q + + P LSP G L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 299 QYEGWRRPRADWLSPVGAELLEIGAKAILGAEAVFAVTRRPESYGGHPFIVEAAVAWGGQ 358
Query: 449 DVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
I R+AN+IPLL+++G D V R + +W +YK+ + + V + + STKI
Sbjct: 359 IPPSDKPILLRYANKIPLLYDEGAD-VARKVVDEFHWDNYKV-KFPAPLAVIIHVCSTKI 416
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
P+ GKE I + EI ++ A++ +L+ + RK +REQ+ + +S
Sbjct: 417 PYASAGKEAIA-EVPEIEKEMRLALRDAAKKLRLYLSRK--EREQELLNKYIS 466
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
AE+F NK +AGF NP ++LY T+REL ENSLD+ E+ LP V + ++
Sbjct: 12 AEWFRRNKELAGFHNPTRALYQTIRELTENSLDATETYGILPTVYLRVK 60
>gi|124027833|ref|YP_001013153.1| DNA topoisomerase VI subunit B [Hyperthermus butylicus DSM 5456]
gi|123978527|gb|ABM80808.1| Type II DNA topoisomerase VI subunit B [Hyperthermus butylicus DSM
5456]
Length = 535
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 15/414 (3%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLP 208
+++YR+T +DNG G+ +P FG+VL +KY L+Q RG+FGLGAKMA+++ ++ TG P
Sbjct: 74 SNYYRITVEDNGIGIQPQYVPYAFGQVLYSSKYKLRQARGRFGLGAKMAILYGQIRTGRP 133
Query: 209 IEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK 268
+E+ ++ I + KL IDI N P V + N WHG + +VIEG+W + +
Sbjct: 134 VEVYTAPIGSRKIYYFKLKIDIEHNRPIVLTKAEYPNPKGWHGTRVSLVIEGDWWHSKHR 193
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y+++ A+ PYA +F + + + R +P P E K HP VD+ L+
Sbjct: 194 VYEYIKRTAIAAPYANIVF-----IDPNGNVVIYKRSISKLPKQPKEVKPHPHGVDIELL 248
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
K LI+ + T+++FL F +G+ AE + G + + SL +Q+ + +
Sbjct: 249 KQLISGSQAKTMVEFLAEAFRGVGRKTAEAFLEWAG--IAKNLDPHSLDDRQLELLARKL 306
Query: 389 RQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ KF PS LSP G + G+ L P+ VA + + +EGHPFIVE G++ GG
Sbjct: 307 REYQKFRAPSADALSPFGPEIIEAGLRSILKPEFVAAVTRRPRAYEGHPFIVEVGIAYGG 366
Query: 448 KDVKQGLNI-FRFANRIPLLFEQGGDVVTRTA-MKRINWSSYKINQTQDKIGVFVSIVST 505
+ I R+AN+IPLL+++ DV + +W +Y + + V I ST
Sbjct: 367 EIPPTNEPILLRYANKIPLLYDEKSDVAWKVVDPHNFDWRNYLVT-FPAPVAVLTHIAST 425
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
K+P+K GKE + D EI +++A+++ +L+ + +Q R+++E KR +
Sbjct: 426 KVPYKSVGKESVA-DVPEIEQELRNALREAARRLRGYL---LQKRKEEEAKRRI 475
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ + + +P++FF E K +AGF +P ++LY TVRELVEN+LD+ + LP + I IE +
Sbjct: 11 QESFRSMTPSQFFYEYKEVAGFGSPARALYQTVRELVENALDATDVHGILPDITIVIERV 70
Query: 80 GKS 82
++
Sbjct: 71 NEN 73
>gi|171185843|ref|YP_001794762.1| DNA topoisomerase VI subunit B [Pyrobaculum neutrophilum V24Sta]
gi|170935055|gb|ACB40316.1| DNA topoisomerase VI, B subunit [Pyrobaculum neutrophilum V24Sta]
Length = 530
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 230/411 (55%), Gaps = 15/411 (3%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS 213
V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++S+ +T P+ + S
Sbjct: 72 VYAEDNGIGIPGNEIPNVFGRVFYSSKYRIKQHRGVFGLGLKMVVLYSQSTTNKPVFVRS 131
Query: 214 SMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYM 273
+ + I ++ ID + N P + + NK RWHG ++V +EGNW + +I Y+
Sbjct: 132 ATLKSDKIYEFQIMIDTNSNSPIILDRREYPNKYRWHGTAVKVYLEGNWLAAKKRIEDYL 191
Query: 274 RQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIA 333
++ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ IK ++
Sbjct: 192 KRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTIKQMLQ 245
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK- 392
E+ TLL+FL F +G+ A+ + G F+P +LT +++VR+ + +Q +
Sbjct: 246 ESRGMTLLEFLMENFDAVGEGTAKTFLEWAG--FNPNAKATALTPEELVRLVEKMKQFEG 303
Query: 393 FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK--DV 450
+ P LSP G L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 304 WRRPRSDWLSPVGPELLEIGAKAILGAEAVFAVTRKPESYGGHPFIVEAAVAWGGQIPPA 363
Query: 451 KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFK 510
+ L + R+AN+IPLL+++G D V R + NW +YK+ + + V + + STKIP+
Sbjct: 364 DKPL-LLRYANKIPLLYDEGAD-VARKVVDEFNWQNYKV-KFPAPLAVIIHVCSTKIPYA 420
Query: 511 GTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
GKE + + EI ++ A++ +L+ + RK ++ E + +L++
Sbjct: 421 SAGKEAVA-EVPEIEKEMRLALRDAAKKLRLYLSRKEKEMELLNKYISLAK 470
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF NP ++LY T+REL ENSLD+ E+ LP + + I
Sbjct: 13 AEWFRRNRELAGFHNPTRALYQTIRELTENSLDATETYGILPNIYLRI 60
>gi|145592125|ref|YP_001154127.1| DNA topoisomerase VI subunit B [Pyrobaculum arsenaticum DSM 13514]
gi|145283893|gb|ABP51475.1| DNA topoisomerase VI, B subunit [Pyrobaculum arsenaticum DSM 13514]
Length = 528
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 226/404 (55%), Gaps = 13/404 (3%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
S+ V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++++ +T P+
Sbjct: 65 SWVSVYAEDNGIGIPGNEIPNVFGRVFYSSKYRIKQHRGVFGLGLKMVVLYAQSTTNKPV 124
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+ S+ + I ++ ID + N P + + NK RWHG ++VV+EGNW + +I
Sbjct: 125 LVRSATLKSDKIYEYQIMIDTNANSPIILDRREYPNKYRWHGTAVKVVLEGNWLGAKKRI 184
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+R+ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ IK
Sbjct: 185 EDYLRRTAIIAPYAEIVFK------GPDMDLWLKRRTTKLPPAPKEGLPHPKSVDVDTIK 238
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
++ ++ TLL+FL F +G+ A+ + G F+P +LT +++VR+ + +
Sbjct: 239 QMLLDSRGMTLLEFLTENFDAVGEGTAKAFLEWAG--FNPNAKATALTPEELVRLVEKMK 296
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
Q + + P LSP G L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 297 QYEGWRRPRADWLSPVGAELLEIGAKAILGAEAVFAVTRKPESYGGHPFIVEAAVAWGGQ 356
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
+ R+AN+IPLL+++G D V R + +W +YK+ + + V + + STKI
Sbjct: 357 IPPSDKPLLLRYANKIPLLYDEGAD-VARKVVDEFHWDNYKV-KFPAPLAVIIHVCSTKI 414
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
P+ GKE I + EI ++ A++ +L+ + RK ++ E
Sbjct: 415 PYASAGKEAIA-EVAEIEKEMRLALRDAAKKLRLYLSRKEKEME 457
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF N ++LY T+RELVENSLD+ E+ LP + + +
Sbjct: 10 AEWFRRNRELAGFHNSTRALYQTIRELVENSLDATETYGILPTIYLRV 57
>gi|379003157|ref|YP_005258829.1| DNA topoisomerase VI subunit B [Pyrobaculum oguniense TE7]
gi|375158610|gb|AFA38222.1| DNA topoisomerase VI, B subunit [Pyrobaculum oguniense TE7]
Length = 528
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 226/404 (55%), Gaps = 13/404 (3%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
S+ V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++++ +T P+
Sbjct: 65 SWVSVYAEDNGIGIPGNEIPNVFGRVFYSSKYRIKQHRGVFGLGLKMVVLYAQSTTNKPV 124
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+ S+ + I ++ ID + N P + + NK RWHG ++VV+EGNW + +I
Sbjct: 125 LVRSATLKSDKIYEYQIMIDTNANSPIILDRREYPNKYRWHGTAVKVVLEGNWLGAKKRI 184
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+R+ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ IK
Sbjct: 185 EDYLRRTAIIAPYAEIVFK------GPDMDLWLKRRTTKLPPAPKEGLPHPKSVDVDTIK 238
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
++ ++ TLL+FL F +G+ A+ + G F+P +LT +++VR+ + +
Sbjct: 239 QMLLDSRGMTLLEFLTENFDAVGEGTAKAFLEWAG--FNPNAKATALTPEELVRLVEKMK 296
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
Q + + P LSP G L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 297 QYEGWRRPRADWLSPVGGELLEIGAKAILGAEAVFAVTRKPESYGGHPFIVEAAVAWGGQ 356
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
+ R+AN+IPLL+++G D V R + +W +YK+ + + V + + STKI
Sbjct: 357 IPPSDKPLLLRYANKIPLLYDEGAD-VARKVVDEFHWDNYKV-KFPAPLAVIIHVCSTKI 414
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
P+ GKE I + EI ++ A++ +L+ + RK ++ E
Sbjct: 415 PYASAGKEAIA-EVAEIEKEMRLALRDAAKKLRLYLSRKEKEME 457
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV--EITIEEIGKS 82
AE+F N+ +AGF N ++LY T+RELVENSLD+ E+ LP + + +E+ KS
Sbjct: 10 AEWFRRNRELAGFHNSTRALYQTIRELVENSLDATETYGILPTIFLRVAVEDEQKS 65
>gi|327310398|ref|YP_004337295.1| DNA topoisomerase VI subunit B [Thermoproteus uzoniensis 768-20]
gi|326946877|gb|AEA11983.1| DNA topoisomerase VI, B subunit [Thermoproteus uzoniensis 768-20]
Length = 528
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 235/428 (54%), Gaps = 14/428 (3%)
Query: 137 PSATKGAKGRGEA-SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAK 195
P+ T K EA S+Y V +DNG G+P +IPN+FGRV +KY +KQ RG FGLG K
Sbjct: 54 PNITITIKPVDEAKSWYSVYVEDNGVGIPGHEIPNVFGRVFYSSKYKIKQHRGVFGLGLK 113
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
M +++++ +T PI + S+ + I ++ ID +N P + + ENK +WHG ++
Sbjct: 114 MVVLYAQSTTNRPISVRSAAVRSDKIYEYRIMIDTTKNEPIIVDMREYENKYKWHGTAVK 173
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
VVIEGNW + +I Y+R+ A+I+PYA+ FK ++ + RRT +PP P E
Sbjct: 174 VVIEGNWLNSKKRIEEYLRRTAIISPYAEIYFK------GPDMEMFLKRRTIKIPPPPEE 227
Query: 316 TKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKS 375
HP SVD+ +K +I+E+ TL +FL + F +G+ LA + P V S
Sbjct: 228 GLPHPKSVDVDTVKQMISESKTATLAEFLINNFDGVGEGLARSFLEWAA--LDPNKPVGS 285
Query: 376 LTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEG 434
LT +IV + + + + + P LSPAG L +G L + V + + G
Sbjct: 286 LTQDEIVLLVEKMKAYEGWRRPRADWLSPAGPELLEVGAKSILGAEAVFAVTRKPSSYSG 345
Query: 435 HPFIVEAGVSVGGKDVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ 493
HPFIVEA ++ GG+ V I R+AN+IPLL+++G D V R + NW +YK+ +
Sbjct: 346 HPFIVEAAIAWGGQIVPVDKPILLRYANKIPLLYDEGAD-VARKVVDEFNWQNYKV-KFP 403
Query: 494 DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
+ V + + STK+P+ GKE + +EI +K A++ +L+ + RK ++ E
Sbjct: 404 APVAVIIHVCSTKVPYASAGKE-AIAEIQEIEEEMKLALRDAARKLRIYLSRKERELELL 462
Query: 554 ERKRNLSR 561
+ +L++
Sbjct: 463 NKYTSLAK 470
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
AE+F N+ IAGF NP +++Y TVRELVENSLD+ E LP + ITI+ + ++K
Sbjct: 13 AEWFRRNREIAGFQNPARAMYQTVRELVENSLDATEPYGILPNITITIKPVDEAK 67
>gi|332797100|ref|YP_004458600.1| DNA topoisomerase VI subunit B [Acidianus hospitalis W1]
gi|332694835|gb|AEE94302.1| DNA topoisomerase VI, B subunit [Acidianus hospitalis W1]
Length = 527
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 229/398 (57%), Gaps = 18/398 (4%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y++T +DNG G+P +P+ FGRVL +KY ++QTRG +GLG K A+++S+M P+EI
Sbjct: 68 YKLTVEDNGIGIPPHVVPDAFGRVLYSSKYVIRQTRGMYGLGVKAAVLYSQMYQDRPVEI 127
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
+S + I F KL ID+ +N P ++ N +HG + + + G+W +++I
Sbjct: 128 MTSPINSKRIYFFKLKIDVTKNEPIIYERSSILNDKGFHGTSVTLYLLGDWQRSKARIYE 187
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+++ ++ PYA+F FK E NV + + R T +P P E K HP VD+ L+K +
Sbjct: 188 YIKRTYIVAPYAEFFFK----DPEGNV-VYYKRLTTKIPEPPKEVKPHPYGVDIELLKNM 242
Query: 332 IAETSKGTLLQ-FLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
IA+ ++ FL EF ++G A +++ EM + +P +KSL ++ R+ + +
Sbjct: 243 IAKQKNDYEVKDFLTKEFQSVGDVTALKIL-EMA-KINPDKKIKSLKDDELARLTEAMK- 299
Query: 391 AKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
KF+D PS LS G + L + +P+ VA + + ++GHPFIVE G++ GG
Sbjct: 300 -KFEDFRPPSPDALSVIGADLIELSLKNMFNPEFVAALTRKPKAYQGHPFIVEVGIAYGG 358
Query: 448 --KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
+ + + L + R+AN+IPL++++ DV+ + ++ I+W Y I + Q + V V + ST
Sbjct: 359 AIQPMDEPL-VLRYANKIPLIYDEKSDVIWKV-VEEIDWKRYGIEEEQKPLVVMVHLCST 416
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
K+P+K GKE I D +EI +K+ I + +L+ I
Sbjct: 417 KVPYKSAGKESIA-DVEEIEKEIKNGIMEVSRKLRLYI 453
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP ++LY +RE+VENSLD+ + LP ++I ++ I + K
Sbjct: 9 SPAEFFKRNPELAGFSNPARALYQALREMVENSLDATDVHEILPSIKIIMDLIDQDK 65
>gi|119719576|ref|YP_920071.1| DNA topoisomerase VI subunit B [Thermofilum pendens Hrk 5]
gi|119524696|gb|ABL78068.1| DNA topoisomerase VI, B subunit [Thermofilum pendens Hrk 5]
Length = 516
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 225/408 (55%), Gaps = 24/408 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R E RV DNG G+P ++PN+FGRV G+KY ++QTRG FGLG KMA+++++M+T
Sbjct: 64 RPEWVVLRVA--DNGIGIPLSEVPNVFGRVFYGSKYVVRQTRGVFGLGVKMAVLYAQMTT 121
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
PI + SS + ++ L IDI RNIPHV ++ WHG +++ +EG+W
Sbjct: 122 ARPIYVKSSPINSRYVGEYLLYIDISRNIPHVQKMRIKKKTKNWHGTIVKLTLEGSWVQA 181
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
+ +I Y+R+ A+I+PYA ++ + + F R + +P P K+HP VD+
Sbjct: 182 KKRIEDYIRRTALISPYATIRYR------SPDGELIFKRVSRELPQPPEIGKYHPRGVDV 235
Query: 326 LLIKGLIAET---SKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
++K LI T S+ TLL+FL F +G+ A + G FSP LT ++
Sbjct: 236 EVLKELIRATNNASEVTLLEFLVKHFEGVGEKKATEFLQWSG--FSPDT---KLTELKLA 290
Query: 383 RIHQLFRQAK----FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
+ L + K + P LSP G L+ G+ L P+ VA + + GH FI
Sbjct: 291 DLEVLASKMKTFPGWRRPRPLTLSPLGADLLKKGVKSILKPEFVAAVTRPPSSYSGHAFI 350
Query: 439 VEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
VEA ++ GG+ Q + + RFAN++PLL+++G D V+R + I+WS YK+ + +
Sbjct: 351 VEAAIAYGGEIPPQDTVMLLRFANKMPLLYDEGVD-VSRKIIDSIDWSIYKV-KLPAPVA 408
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
V + STKIPFKG GKE I D E+ ++ AI+ +L++ + R
Sbjct: 409 VVTHVCSTKIPFKGVGKEAIA-DVPEVEHELEIAIRDVARRLRAYLSR 455
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
SPAEFF N+ IAGF NP ++LY VRELVENSLD+ E+ LP +++ I
Sbjct: 9 SPAEFFHRNREIAGFSNPARALYQAVRELVENSLDATETHGILPFIDVEI 58
>gi|170291064|ref|YP_001737880.1| DNA topoisomerase VI subunit B [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175144|gb|ACB08197.1| DNA topoisomerase VI, B subunit [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 512
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 214/399 (53%), Gaps = 14/399 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+YR+ DNG GM ++IP FGRV +KY L Q+RG FGLG MAL++ +++T +P +
Sbjct: 73 WYRIRVADNGIGMDPEEIPLAFGRVFVSSKYRLIQSRGTFGLGGTMALLYGQITTNMPFK 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I+S+ + IDI +N P + L K + R ++ EGN+ + KI+
Sbjct: 133 ITSAREGEPAYELTMM-IDIRKNEP-IILDRKIKGVSRRSFTIVESTFEGNYPRAKRKII 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++Q A++ PY F E ++ I F R T+ +PP P E HP VDL L++
Sbjct: 191 DYLQQTAIVVPYISIAFM----DPEGHLYI-FPRSTEKIPPRPKEALFHPKGVDLELLQR 245
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
L++ T +L FL F +GK A ++ G P L + I R+++ R
Sbjct: 246 LLSSTRTRSLESFLMTHFQRVGKKTASEVLKIAG--LPPDKRPSDLKDEDIRRLYEALRS 303
Query: 391 AK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
K F P LSP GE GI KEL P+ V V+E HPFIVE ++ GG
Sbjct: 304 YKEFLPPDPSVLSPLGEELFESGIKKELQPEFVKAIQRPPSVYEAHPFIVEVAIAYGGLI 363
Query: 450 VKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKI 507
G + ++R+AN+IPLL++ D V+ +K+I+WS Y I +D+ I F+ IVSTK+
Sbjct: 364 KPTGDIQLYRYANKIPLLYDASSD-VSYQVIKKIDWSIYGIKNPEDEPIAFFIHIVSTKV 422
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
PFK GKE+I + E+A ++ ++ C +L+ + RK
Sbjct: 423 PFKTVGKEFIA-NVPEVAREIELGLRGCARELRIYLGRK 460
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
L++ S A+FF N+++AGFDNP ++ YT +RELVENSLD+ E P V I +
Sbjct: 7 LEEISAADFFYRNRSLAGFDNPVRATYTIIRELVENSLDAVELAGRSPKVLIVM 60
>gi|374633764|ref|ZP_09706129.1| DNA topoisomerase VI, B subunit [Metallosphaera yellowstonensis
MK1]
gi|373523552|gb|EHP68472.1| DNA topoisomerase VI, B subunit [Metallosphaera yellowstonensis
MK1]
Length = 531
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 222/400 (55%), Gaps = 14/400 (3%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YRV+ +DNG G+P +P+ FGRVL +KY ++QTRG +GLG K A+++S+M
Sbjct: 66 EKEIYRVSVEDNGIGIPPHVVPDAFGRVLYSSKYVIRQTRGMYGLGVKAAVLYSQMYQDR 125
Query: 208 PIE-ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
PIE ++S M S +F KL ID+ +N P ++ N+ +HG + + I G+W +
Sbjct: 126 PIEVVTSPMGSKRLYTF-KLKIDVTKNEPIIYEKASVNNETGFHGTIVTMYILGDWMRAK 184
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
S+I Y+++ +ITPYA+F K E NV + + R T+ +P P E K HP VD+
Sbjct: 185 SRIYEYVKRTYIITPYAEFFLK----DPEGNV-VFYPRLTNKLPEPPKEVKPHPYGVDIE 239
Query: 327 LIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
L+K +I++ T+ +FL EF ++G+ A ++ G P LT Q+ ++
Sbjct: 240 LLKNMISKQRDDITVKEFLVKEFQSVGEKTALGVLEMAG--IDPNKKASKLTDDQLSKLV 297
Query: 386 QLFRQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
+ F PS LS G + LG+ + L PD V + + ++GHPFIVE G++
Sbjct: 298 DSMKSFPDFRPPSPEALSVIGADLIELGLKQTLSPDYVGAVTRKPKAYQGHPFIVEVGLA 357
Query: 445 VGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIV 503
GG + + R+AN+IPL++++ DVV + ++ ++W Y I + Q + V V +
Sbjct: 358 YGGSIQPAEEPTVLRYANKIPLIYDEKSDVVWK-VVEEMDWKRYGIEEEQIPLVVMVHLC 416
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
STK+P+K GKE I D +EI +++ I + LK I
Sbjct: 417 STKVPYKSAGKESIA-DVEEIEKEIRNGIMEAARSLKVYI 455
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 22 ALKQK----SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
+LK+K SPAEFF N +AGF NP +++Y +RELVEN+LD+ + LP V+I+I+
Sbjct: 2 SLKEKFTSISPAEFFKRNPELAGFSNPARAMYQALRELVENALDATDVHGILPSVKISID 61
Query: 78 EIGKSK 83
+ K
Sbjct: 62 RASQEK 67
>gi|116753912|ref|YP_843030.1| DNA topoisomerase VI subunit B [Methanosaeta thermophila PT]
gi|116665363|gb|ABK14390.1| DNA topoisomerase VI, B subunit [Methanosaeta thermophila PT]
Length = 613
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 228/419 (54%), Gaps = 18/419 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPI 209
YRV +DNG G+ +IP +F +L G+++ L+Q+RG+ G+G A+++S++++G P
Sbjct: 70 LYRVIVEDNGPGIVPSEIPRVFAMLLYGSRFHVLRQSRGQQGIGISAAVLYSQLTSGKPA 129
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSK 268
I+S + ++ I+ +N P + + EK + +R G +++ IEG++ R
Sbjct: 130 RITSRTSPERPARYVEVMINTAKNEPEI-IREKDIDWERPRGTRVELEIEGSYVRGRRQS 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ +A++ P+A+ F V T RF R T+++P E K HP+ ++L +
Sbjct: 189 VYSYLKNVAIVNPHARITF-----VEPDGSTERFERATELLPKRACEIKPHPAGIELGEL 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T + L FL+ F +IG A+ +I G P M +SL Q R+ +
Sbjct: 244 TKMLRYTERRKLSSFLKESFTSIGNIAAQEVIHNSG--LDPSMDPRSLNYDQSKRLFEAL 301
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
R+ K P CLSP GE +R G+ KE D +AT S V+ G+PF+VEAG+ GG+
Sbjct: 302 RRIKIKSPPADCLSPIGEDLIRSGLAKEYKLDFIATVSRPVSVYSGNPFVVEAGIGFGGE 361
Query: 449 DVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSI 502
+ G ++I RFANR+PL+++QG +T A++ ++W SY ++Q + V V +
Sbjct: 362 LERSGRVDILRFANRVPLIYQQGACAITH-AVEGVSWKSYGLDQPGGGLPVGPAVILVHV 420
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
ST IPF K+ I D EI + + A+++ +L+ + + E++E++ + R
Sbjct: 421 ASTNIPFTSESKDAIA-DIPEILTEIDLALKEIGRKLRRFLALQETLSERREKEEIIGR 478
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
S AEFF +N+ I GFD+ ++L T V+E V+NSLD+ E LP + + I+ G+
Sbjct: 15 SVAEFFEKNRQILGFDSAPRALITCVKEAVDNSLDACEDAGILPDIFVQIKRTGE 69
>gi|347523835|ref|YP_004781405.1| DNA topoisomerase VI subunit B [Pyrolobus fumarii 1A]
gi|343460717|gb|AEM39153.1| DNA topoisomerase VI, B subunit [Pyrolobus fumarii 1A]
Length = 526
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 210/398 (52%), Gaps = 14/398 (3%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
S VT +DNG G+P I G+ L +K+ ++Q+RG+FGLGAK +++ +TG PI
Sbjct: 66 SICTVTVEDNGIGIPPQKIAEALGKPLVTSKFKIRQSRGQFGLGAKAVTVYALSTTGSPI 125
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
E SS + + K ID+ N P ++ +WHG I+ I NW+ RS+I
Sbjct: 126 EAYSSPLDSERVYYVKFSIDLSTNEPAIYALGSWRKSTKWHGTRIRARIRCNWSYARSRI 185
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTI-RFSRRTDVMPPVPVETKHHPSSVDLLLI 328
L Y +A++TPYA +F E + TI + R + MP P E K HP+S++ +
Sbjct: 186 LKYFEMLAIVTPYADIVF------IEPDGTIHHYPRIVEKMPRPPKEVKPHPASLEKGEL 239
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
+ L+ T+ T+ +FL F +G+ A ++ G P +SLT ++I R+H+
Sbjct: 240 QMLLKRTTARTIKEFLISTFQRVGEKSALNVLKLAG--IDPSKPPQSLTDEEIERLHKAL 297
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE-GHPFIVEAGVSVGG 447
R KF PS L+P G + G+ L P+ V + ++ GHPFIVE G++ GG
Sbjct: 298 RSYKFPAPSSEALAPIGAELIEAGLKAILKPEFVVAVTRKPRMHSGGHPFIVEVGIAYGG 357
Query: 448 K-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTK 506
+ ++ + R+ANRIPL++++ DV + ++ NW Y +N + V I STK
Sbjct: 358 AIEPREQPLLLRYANRIPLIYDEKADVAWKV-LEEFNWKHYGVNFPAPLV-VLTHICSTK 415
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV 544
IP+K KE + + +EI + A+Q+ +L+ ++
Sbjct: 416 IPWKVGSKEAVA-EREEIKEELHLALQEAARKLRHYLI 452
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
LKQ + AEF + K + GF+NP ++LY T+RE VEN+LD+ + LP V + IE+ K
Sbjct: 5 LKQITVAEFLYKEKQLWGFENPARALYQTIREYVENALDATDLYGILPNVTVIIEQDEKD 64
Query: 83 KFNSMIGLVD 92
K + + D
Sbjct: 65 KSICTVTVED 74
>gi|327400959|ref|YP_004341798.1| type 2 DNA topoisomerase 6 subunit B [Archaeoglobus veneficus SNP6]
gi|327316467|gb|AEA47083.1| Type 2 DNA topoisomerase 6 subunit B [Archaeoglobus veneficus SNP6]
Length = 606
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 222/405 (54%), Gaps = 23/405 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+ +DNG G+ + IP +FG++L G+++ ++Q+RG+ G+G A+++++++TG P
Sbjct: 70 YRIVIEDNGPGIIREQIPKVFGKLLYGSRFHAIRQSRGQQGIGISAAVLYAQLTTGKPAV 129
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW---HGAEIQVVIEGNWTTYRS 267
++S + ++ I+ +N P + E+ E W G I++ I G++ R
Sbjct: 130 VTSKTSPDSKAVRMEIFINTRKNEPEIVSEEEVE----WLVARGTRIELEIAGSYVKERK 185
Query: 268 K-ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
+ + Y+R+ +V+ P+A+ F V F R ++ +PPVP E K HP ++L
Sbjct: 186 QSVFEYLRETSVVNPHAKITF-----VDPDGEIHEFPRVSEELPPVPKEIKPHPHGIELG 240
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
+ ++ T L FL++EFV +G AE +I G S ++ + + ++ VR+ Q
Sbjct: 241 QLMAMLRYTKARDLRSFLKNEFVRVGDKTAEEVISRAG--LSANVSPQEMGREEAVRLLQ 298
Query: 387 LFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
F + F P CLSP GE + ++ E P+ V + +V GHPF+VE G++ G
Sbjct: 299 AFSETDFLPPPTDCLSPIGESLIMKSLMAEYKPEWVYAVTRKPKVHSGHPFLVEVGIAYG 358
Query: 447 GKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG-----VFVS 501
G+ + + + R+AN+IPLL++QGG +T+ A++ +NW +Y + QT+D++ + V
Sbjct: 359 GEISEDRVTLLRYANKIPLLYQQGGCALTK-AVESVNWKNYGLQQTRDELPSGRAVILVH 417
Query: 502 IVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
+ ST IP+ KE + EI V+ A+Q+ +L+ + RK
Sbjct: 418 LASTNIPYTSESKEAVA-AIPEIIEEVRLALQEAGRRLREYLERK 461
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 20 ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQK S AEFF +NK+I G+ NP K++ T V+E V+NSLD+ E LP + + ++
Sbjct: 5 ELAKKQKEISIAEFFEKNKHILGYSNPAKAVITCVKEAVDNSLDACEEAGILPDIFVKVD 64
Query: 78 EIGK 81
+ +
Sbjct: 65 RVDR 68
>gi|383318870|ref|YP_005379711.1| DNA topoisomerase VI subunit B [Methanocella conradii HZ254]
gi|379320240|gb|AFC99192.1| DNA topoisomerase VI, B subunit [Methanocella conradii HZ254]
Length = 543
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/549 (28%), Positives = 251/549 (45%), Gaps = 88/549 (16%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S +K+ S +EF A N ++ GF++ K + ++ ELV NSLD+ E+
Sbjct: 10 SEMKEISFSEFIAANPHLVGFESSLKMIPMSIHELVTNSLDACEAA-------------- 55
Query: 81 KSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSAT 140
G++ VD K D EK R +R
Sbjct: 56 --------GILPEIWVDLKAID----EKGRLKR--------------------------- 76
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL-KQTRGKFGLGAKMALI 199
YR+T +DNG G+P ++P +FG++L G+K+G KQ+RG+ G+G ++
Sbjct: 77 -----------YRLTVRDNGPGIPPKNVPPVFGKLLYGSKFGARKQSRGQQGIGVSAVVL 125
Query: 200 WSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE 259
S++ TG + SS + +L +D++RN +H +E W G E +VV+E
Sbjct: 126 ISQIKTGEHTIVKSSTDGRTAHVY-ELTMDVNRNAARIH-RTYKEKAGGWRGVEARVVLE 183
Query: 260 GNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHH 319
+T ++I Y+ A I P+ + V E + RRTD +PP PVETK H
Sbjct: 184 AQFT---ARIREYLELTAAINPHLALHYDGVDE----KDRLEVERRTDALPPKPVETKPH 236
Query: 320 PSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
P +D L+ + A T L FL+ EF + A ++I F SL+ Q
Sbjct: 237 PLGIDYDLLSKMAARTGHKRLYDFLKGEFDRMRPETARKVIQSC--HFDVDKHPSSLSRQ 294
Query: 380 QIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIV 439
+++ + + R + PS CLSP GE L G+I L P+ + + G PF+V
Sbjct: 295 EVLELVEAMRNVEVPPPSPECLSPVGEEVLVKGVIGRLRPEFIEAVTRKPCAMRGQPFLV 354
Query: 440 EAGVSVGGK-------DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT 492
EA ++ G + D G++I RF NR+PLLF + DV+ + A + Y++
Sbjct: 355 EAIIAYGCEADIGGSPDPVTGVSIHRFVNRVPLLFSESSDVIIKAA-RDAGLGRYEVT-P 412
Query: 493 QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI--VRKIQDR 550
+ + +FV I IP+ KE I E VK AIQ+C ++ +I RK ++
Sbjct: 413 ESRSHLFVHIAGVNIPYTSESKEAI-KPVDEYYDEVKLAIQECGRKVSKRIRQARKAEES 471
Query: 551 EQQERKRNL 559
+ RKR L
Sbjct: 472 FMKGRKRAL 480
>gi|386000803|ref|YP_005919102.1| type 2 DNA topoisomerase 6 subunit B [Methanosaeta harundinacea
6Ac]
gi|357208859|gb|AET63479.1| Type 2 DNA topoisomerase 6 subunit B [Methanosaeta harundinacea
6Ac]
Length = 611
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 226/419 (53%), Gaps = 20/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
RGE +RV +DNG G+ ++P +F ++L G+++ LKQ+RG+ G+G +++S+++
Sbjct: 67 RGEG--FRVVVEDNGPGIVGGEVPRVFAKLLYGSRFHALKQSRGQQGIGISAGVLYSQLT 124
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT- 263
TG P +++ + + +L I+ N P V E+ E DR HG +++ +EG++
Sbjct: 125 TGRPTAVTTKIGPTHRAGRWELMINTATNEPEVLKTEETE-WDRPHGTRVELEMEGSYVR 183
Query: 264 TYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
+ R I Y++ +A++ P+A+ + NV + F R TD MP E K HP +
Sbjct: 184 SRRQSIYGYLKNVAIVNPHARITLV----EPDGNVEV-FERATDKMPSPSYEIKPHPLGM 238
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T K L FL F ++G +++ + E P+MA + LT + R
Sbjct: 239 ELGGLIKMLRYTDKKKLKSFLAGSFSSVGAIISQEICDRA--ELDPEMAPQDLTHSEATR 296
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ F++ + P CLSP GE +R G+ KE D +AT V+ G+PF VE G+
Sbjct: 297 LLAAFKEMRLKSPPTDCLSPIGEELIRAGLEKEYRVDFIATTKRPVSVYAGNPFQVEVGL 356
Query: 444 SVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GG+ G + + RFANR+PLL++QGG +T A++ ++W Y ++Q + V
Sbjct: 357 AYGGELKGDGKVEVLRFANRVPLLYQQGGCAITH-AIENVSWKIYSLSQPGGGVPVGPAA 415
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
V I ST IPF K+ + D EI + V+ +++ +L+ I +K E++E++
Sbjct: 416 LLVHIASTNIPFTSESKDAVA-DVPEIVAEVELGLKEVGRKLRRYISKKSALSERKEKE 473
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
K S AEFF +N+ I GFD+ ++L TTV+E V+NSLD+ E LP + + I
Sbjct: 12 KAISVAEFFEKNRQILGFDSAPRALITTVKEAVDNSLDACEEADILPDIFVQI 64
>gi|284162384|ref|YP_003401007.1| DNA topoisomerase VI subunit beta [Archaeoglobus profundus DSM
5631]
gi|284012381|gb|ADB58334.1| DNA topoisomerase VI, B subunit [Archaeoglobus profundus DSM 5631]
Length = 574
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 228/412 (55%), Gaps = 23/412 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+T +DNG G+ D+IP +FG++L G+++ LKQ+RG+ G+G A+++++++TG P
Sbjct: 65 YRITVEDNGPGIEKDEIPRIFGKLLYGSRFHTLKQSRGQQGIGISSAVLYAQLTTGKPTR 124
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKI 269
+ S R + + ++ ID RN P V + E++ + R HG I++ +EG++ R +
Sbjct: 125 VISKRRGESAWLY-EILIDTKRNEPEV-VREEKIDWHRPHGIRIELEVEGSYVKGRRQSV 182
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+RQ ++I P+ + F + F R + +P +P K HP ++L +
Sbjct: 183 YEYLRQTSIINPHTRITF-----IEPDGEIHEFERVSYELPKIPKAIKPHPHGIELGNLI 237
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
++ ++ L +FL EF +G AE ++ + G + AV T ++ +++ + F+
Sbjct: 238 KMLKDSRARNLKEFLIKEFSRVGDKTAEEILRKSGLQNKHPRAV---TREEAIKLLEAFK 294
Query: 390 QAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
+ + P CLSP G + ++ E P+ V S +V+ G+PF+VE G++ G
Sbjct: 295 ETQLLPPPTDCLSPIGGDLIIKSLVSEFKPEFVCAVSRKPKVYSGNPFLVEVGLAYGVNT 354
Query: 450 VKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG-----VFVSIVS 504
+ L RFANRIPLL++QGG +T+ A++ +NW SY + Q ++++ + + I S
Sbjct: 355 DRTVL--LRFANRIPLLYQQGGCALTK-AVESVNWKSYGVQQNKNELPNAPMVILIHIAS 411
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK--IQDREQQE 554
T IP+ KE I EI V+ A+Q+ +LK+ I +K IQ++ ++E
Sbjct: 412 TNIPYTSESKEAIA-GIPEIVEEVRLALQEVGRKLKAYIDKKRAIQEKRKKE 462
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
K+ S AEFF +NK+I G+ NP K+L T V+E V+NSLD+ E LP + + I + K
Sbjct: 6 KEISVAEFFEKNKHILGYSNPAKALVTCVKEAVDNSLDACEEAGILPDILVRINRVDK 63
>gi|41614939|ref|NP_963437.1| DNA topoisomerase VI subunit B [Nanoarchaeum equitans Kin4-M]
gi|40068663|gb|AAR38998.1| NEQ144 [Nanoarchaeum equitans Kin4-M]
Length = 567
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/427 (31%), Positives = 226/427 (52%), Gaps = 31/427 (7%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTG 206
E + V +DNG G+P +++PN+FG+ L GTK+ LKQ RG+ G+GA ++S+++TG
Sbjct: 60 EGKYMTVRVEDNGPGIPFNEVPNVFGKFLYGTKFHVLKQNRGQQGIGAAAITLYSQLTTG 119
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
PI + N + ++ ID RN P V L +K + HG ++ I+G +T +
Sbjct: 120 KPIRVWDKPIDSNKAYYYEIMIDTKRNEPEV-LVKKEVKLNIKHGLIVEADIKGEYTKGK 178
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
+ Y++ AV P+A+ +++ K I F R T+ +PP+P E K HP ++L
Sbjct: 179 QSVDQYLKLTAVANPHAEIIYR-----TPKGEYIVFKRGTNELPPLPKEIKPHPHGIELG 233
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG------EMGPEFSP--------KMA 372
+K +++E KG L+ FL F ++G+ A+ ++ E +F K+
Sbjct: 234 QLKKMVSE-HKGDLMDFLIKNFSSVGEDKAKEILARYIFYKEGKEDFEKFFKRFRGRKID 292
Query: 373 VKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVF 432
+KSLTS+ + + + R+ K PS L P GE NL++GI KE + +A + +V+
Sbjct: 293 IKSLTSEDLELLLKAMRETKLKMPSAKALIPIGEKNLQIGITKEYDVEYLAVKTRKPKVY 352
Query: 433 EGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKI-- 489
G PF+VE V++G D ++ I RFANR PLL++ G + + A+K INW Y
Sbjct: 353 SGGIPFLVE--VAIGYGDFEKA-EILRFANRTPLLYKAGECAIVK-AIKDINWKRYGFEV 408
Query: 490 -NQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQ 548
N + V I S K+P+ KE I D E+ +K A+Q+ +++ I +K +
Sbjct: 409 ENNLPKNALILVHIASVKVPYTSESKEAIA-DIPEVREEIKRALQEVARKVQIYIKKKEE 467
Query: 549 DREQQER 555
+E E+
Sbjct: 468 TKELAEK 474
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 22 ALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
++ + AEFF +NK GFD+P K+L TV+ELV+N+LD+ E LP +++T++E
Sbjct: 4 TFREATIAEFFEKNKQFLGFDSPRKALVMTVKELVDNALDATEEARILPTIKVTLKE 60
>gi|147920486|ref|YP_685721.1| DNA topoisomerase VI subunit B [Methanocella arvoryzae MRE50]
gi|110621117|emb|CAJ36395.1| type II DNA topoisomerase VI, subunit B [Methanocella arvoryzae
MRE50]
Length = 556
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 160/562 (28%), Positives = 263/562 (46%), Gaps = 99/562 (17%)
Query: 13 KSPKTPNESA--LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP 70
K+ KT E A +K+ S +EF A N ++ GF++ K + ++ E++ NSLD+ ES
Sbjct: 4 KNCKTAKELAKEMKEISFSEFIATNPHLVGFESSVKMIPMSIHEILTNSLDACESA---- 59
Query: 71 VVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAAL 130
G++ +D K DD K R +R
Sbjct: 60 ------------------GILPEVWIDLKSLDD----KGRLKR----------------- 80
Query: 131 GKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGK 189
Y++T +DNG G+ ++P +FG++L G+K+G++ Q+RG+
Sbjct: 81 ---------------------YKLTVRDNGPGILPKNVPLVFGKLLYGSKFGVRRQSRGQ 119
Query: 190 FGLGAKMALIWSKMSTGLPIEISSSM---RSHNFISFCKLDIDIHRNIPHVH-LHEKREN 245
G+G ++ S++ TG + +S +SH F +L +D+ RN VH HE E
Sbjct: 120 QGIGVSAVVLISQIKTGEHAIVKTSTNGKKSHVF----ELSVDVDRNSAKVHDSHE--EK 173
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
+ W G EI V++E ++ ++I+ Y+ A I P+ + V+E V RR
Sbjct: 174 AEGWKGVEISVILEAQFS---ARIMEYIELTAAINPHLSLHYDGVNEADRLEV----PRR 226
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
T+ +P +PVETK HPS D L+K L A T TL FL+ EF + +++++I
Sbjct: 227 TEELPAIPVETKPHPSGADYDLLKRLAARTRYSTLNDFLKGEFDRVRSDVSKQIIAGCKD 286
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+ L ++++ + + A+ PS CLSP GE L G++ L P +
Sbjct: 287 RLDVRKKPADLCKEELMALAEAMSGAQTLPPSTECLSPVGEATLVQGVVSRLQPAFIEAV 346
Query: 426 SGSAQVFEGHPFIVE------AGVSVGGK-----DVKQGLNIFRFANRIPLLFEQGGDVV 474
+ + G PF+VE G +GG D G+ I RF NR+PLLF + GD V
Sbjct: 347 TRKPRAMRGQPFLVEVIIAYGCGAELGGTGESSIDPVTGVYIHRFVNRVPLLFSESGD-V 405
Query: 475 TRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQ 534
T A + + Y+I + + +FV + IP+ KE I E ++ AIQ+
Sbjct: 406 TLKAARDAGLARYEI-APETRSHLFVHVAGVNIPYTSESKEAI-KFVDEYYEEIRLAIQE 463
Query: 535 CCIQLKSKIVRKIQDREQQERK 556
C ++ SK +R+I+ E++ K
Sbjct: 464 CGRKI-SKHIRRIKKSEEEAVK 484
>gi|288930741|ref|YP_003434801.1| DNA topoisomerase VI subunit beta [Ferroglobus placidus DSM 10642]
gi|288892989|gb|ADC64526.1| DNA topoisomerase VI, B subunit [Ferroglobus placidus DSM 10642]
Length = 592
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 221/406 (54%), Gaps = 27/406 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+ +DNG G+ ++IP +FG++L G+++ +KQ+RG+ G+G A++++++STG P +
Sbjct: 63 YRIIVEDNGPGIEKEEIPKVFGKLLYGSRFHTIKQSRGQQGIGISSAVLYAQISTGKPAK 122
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW---HGAEIQVVIEGNWTTY-R 266
I S + +L I+ +N P + E K W HG I++ I G++ R
Sbjct: 123 ILSKVEGDEAYEI-ELFINTKKNEPEI----VSEKKVEWYAPHGTRIELEIVGSYVKEKR 177
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTI-RFSRRTDVMPPVPVETKHHPSSVDL 325
+ Y+RQ +++ P+A+ + E + TI F R ++V P P E K HP ++L
Sbjct: 178 QSVYEYLRQTSIVNPHAKIT------LIEPDGTIHEFKRISNVPPQPPKEIKPHPHGIEL 231
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+ ++ + L FL+ EFV +G +AE +I + G K L+ ++ ++
Sbjct: 232 GTLLNMLKYSKHRDLKSFLKKEFVRVGDKIAEEIIQKAGLSNDDP---KKLSRDEVEKLL 288
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ F+ P CLSP GE ++ +++E P+ V + +V+ GHPF++E G++
Sbjct: 289 EAFKLTNLLPPPTDCLSPIGEDLIKRSLLEEFKPEFVFATTRKPKVYSGHPFLIEVGIAY 348
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT-----QDKIGVFV 500
GG+ ++ + I RFAN+IPLL++Q G +T+ A++ +NW +Y I+Q Q + + +
Sbjct: 349 GGEIEEEKVKILRFANKIPLLYQQSGCALTK-AVESVNWKAYGISQNKGELPQAPMVILI 407
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
+ ST +P+ KE + EI ++ A+Q+ +L+ + RK
Sbjct: 408 HLASTNVPYTSESKEAVA-SIPEIVEELRLALQEAGRKLREYLERK 452
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK+I G+ NP K+L T V+E V+NSLD+ E LP + + I +GK+
Sbjct: 4 KEISVAEFFEKNKHILGYSNPAKALITCVKEAVDNSLDACEEAGILPDILVKIFRVGKN 62
>gi|432328236|ref|YP_007246380.1| DNA topoisomerase VI, B subunit [Aciduliprofundum sp. MAR08-339]
gi|432134945|gb|AGB04214.1| DNA topoisomerase VI, B subunit [Aciduliprofundum sp. MAR08-339]
Length = 646
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 217/420 (51%), Gaps = 37/420 (8%)
Query: 145 GRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKM 203
GR E YR+ +DNG G+ +IP +FG++L G+++ ++Q+RG+ G+G +++ ++
Sbjct: 68 GRDE---YRIVVEDNGPGIIRRNIPLVFGKLLYGSRFHAIRQSRGQQGIGISAVVLYGQL 124
Query: 204 STGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT 263
+TG P + S + L ID +N P + + E DR HG I+VVI +
Sbjct: 125 TTGKPARVVSKISEEEVAYEVILSIDTKKNAPRI-IKESPLLWDREHGTRIEVVIRARYV 183
Query: 264 TYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
+ + Y++Q A++ P+AQ FV ++ + F R TD +PP E K HP +
Sbjct: 184 RGKQSVYEYLQQTAIVNPHAQ--ITFVEPDGKRTI---FKRATDKLPPPTREIKPHPHGI 238
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAER------LIGEMGPEFSPKMAVKSLT 377
+L + + T L FL EF + +AE L GEM P+ L+
Sbjct: 239 ELGELLNMARNTKAYRLTSFLTTEFSRVSPKVAEEICKKAYLYGEMRPQ--------ELS 290
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLG---IIKELHPDMVA-TYSGSAQVFE 433
++ R+ FR+ K P CLSP GE ++ G ++ L P A + +V+
Sbjct: 291 IEEAKRLLDAFRKVKLMAPPTDCLSPIGETLIKKGLKNVLGSLRPSFYAQPVTREPKVYS 350
Query: 434 GHPFIVEAGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT 492
G+PFIVEAG+ GG+ K Q + I RFANR+PLL++QG DV+T+ A+ ++W Y + Q
Sbjct: 351 GNPFIVEAGMVYGGELPKDQPVRILRFANRVPLLYQQGADVITK-AIGSVDWRRYGLEQR 409
Query: 493 QDK---IG---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
+ +G + V + ST++PF KE I + EI ++ A++ QL+ V+K
Sbjct: 410 GGQGIPVGPAIILVHVASTRVPFTSEAKEAIA-EVPEIREEIELALKALGRQLRLYNVKK 468
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK I GFD+ K+L +V+E V+N+LD+ E LP + + I+++G+ +
Sbjct: 12 REISVAEFFEKNKQILGFDSLTKALVVSVKEAVDNALDACEEAQILPDIYVEIDQMGRDE 71
Query: 84 FNSMI 88
+ ++
Sbjct: 72 YRIVV 76
>gi|147921702|ref|YP_684478.1| DNA topoisomerase VI subunit B [Methanocella arvoryzae MRE50]
gi|110619874|emb|CAJ35152.1| type II DNA topoisomerase VI, subunit B [Methanocella arvoryzae
MRE50]
Length = 541
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 208/396 (52%), Gaps = 20/396 (5%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
+ +DNG G+ D +P +FG++L G+++ ++Q+RG+ G+G A+++ ++++G P I+
Sbjct: 83 IIIEDNGPGIQKDVLPRVFGKLLYGSRFHAIRQSRGQQGIGISAAVLYGQLTSGKPARIT 142
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHY 272
S + +L ID N P + + E+ + G I++ +E + + +L Y
Sbjct: 143 SKIDPRLPAYMYELKIDTETNEPRI-ISERVDEFFTSRGTRIELEMEAAYVRGKQSVLEY 201
Query: 273 MRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLI 332
+R A++ P+A+ FV + EK F R +DV+P PVE K HP ++L + ++
Sbjct: 202 LRNTAIVNPHARI--TFVDPLGEKTT---FERASDVLPKQPVEIKPHPRGIELGTLIKMM 256
Query: 333 AETSKGTLLQFLQHEFVNIGKSLAERLIGE--MGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
G L FL EF +G AE + E + P P K + + + R+ F++
Sbjct: 257 QSAEHGKLSTFLNSEFAKVGGYTAENICKEASIDPSADPVELAKDIDA--VKRLMAAFQK 314
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV 450
K P CLSP E L+ G+++ D +AT S G+PF+VEA ++ GG
Sbjct: 315 IKVMAPPKDCLSPITEDLLKKGVVQNHRVDFIATSSRPVNASRGNPFLVEALIAYGGDIQ 374
Query: 451 KQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK------IGVFVSIV 503
+G ++I RFANR+PL+++QG +T A++RINW Y + Q++ I + V +
Sbjct: 375 PEGRIDIVRFANRVPLMYQQGACAITH-AIERINWKHYNLEQSKGAKLPSGPIMIMVHVA 433
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQL 539
ST +PF K+ I D E+ V+ A++Q +L
Sbjct: 434 STNVPFTSESKDAIA-DVPELIDEVELAVRQAAREL 468
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+++ GFD+ + L T ++E V+NSLD+ E S LP + I +
Sbjct: 15 ELARKQKSISVAEFFEKNRHMLGFDSLPRCLITCIKEAVDNSLDACEEASILPDIYIRVR 74
Query: 78 EI 79
++
Sbjct: 75 KV 76
>gi|11498260|ref|NP_069486.1| DNA topoisomerase VI subunit B [Archaeoglobus fulgidus DSM 4304]
gi|3122957|sp|O29605.1|TOP6B_ARCFU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|2649967|gb|AAB90588.1| DNA topoisomerase VI, subunit B (top6B) [Archaeoglobus fulgidus DSM
4304]
Length = 602
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 216/400 (54%), Gaps = 25/400 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+++ +DNG G+P + IP +FG++L G+++ ++Q+RG+ G+G A+++++++TG P
Sbjct: 65 FKIVVEDNGPGIPREQIPKVFGKLLYGSRFHEIRQSRGQQGIGISAAVLYAQLTTGKPAT 124
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWH---GAEIQVVIEGNWTTYRS 267
+ S + L I+ +N E ++ W+ G +I++ + GN+ R
Sbjct: 125 VISKTPDEDRAKKVVLYINTKKN----EPEIVEEGEEEWYLPSGTKIELEVAGNYVRERK 180
Query: 268 K-ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTI-RFSRRTDVMPPVPVETKHHPSSVDL 325
+ + Y+R+ +VI P+A+ F E + TI F R TD +P P K HP ++L
Sbjct: 181 QSVYEYLRETSVINPHAKITF------VEPDGTINEFKRVTDDIPQPPKSIKPHPHGIEL 234
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+ ++ T TL +FL+ EFV +G+ +A+ ++ + G FS + + ++
Sbjct: 235 GTLMSMLKSTRATTLRRFLKEEFVRVGEKIADDVLRKAG--FSGDETPQEMGRDDAAKLL 292
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
FRQ F P CLSP GE + ++ E P+ V + +V+ GHPF+VE G++
Sbjct: 293 NAFRQTDFLPPPTDCLSPIGEAMIAKSLMAEFQPEFVYAVTRKPKVYSGHPFLVEVGLAY 352
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG-----VFV 500
GG+ + + + R+AN+IPLL++QGG +T+ A++ +NW SY + Q + ++ + +
Sbjct: 353 GGEIKSEKVTLLRYANKIPLLYQQGGCALTK-AVESVNWKSYGMVQNRGELPSAPAVILI 411
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLK 540
+ ST IP+ KE + EI + A+Q+ +LK
Sbjct: 412 HLASTNIPYTSESKESVA-AIPEIIDETRLALQEVGRRLK 450
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
++ S AEFF +NK+I G+ NP K++ T V+E V+N+LD+ E LP + + I ++
Sbjct: 6 REISVAEFFEKNKHILGYSNPAKAIITVVKEAVDNALDACEEAGILPDIFVRISKV 61
>gi|395645301|ref|ZP_10433161.1| DNA topoisomerase VI, B subunit [Methanofollis liminatans DSM 4140]
gi|395442041|gb|EJG06798.1| DNA topoisomerase VI, B subunit [Methanofollis liminatans DSM 4140]
Length = 599
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 215/419 (51%), Gaps = 28/419 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YRV +DNG G+ +++P +FG++L G+++ ++Q+RG+ G+G A+++++++TG P
Sbjct: 72 YRVAVEDNGPGIVPENVPYVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTTGTPAA 131
Query: 211 I----SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
+ S+ + +H F L I N P V HE+ DR HG I++ + R
Sbjct: 132 VVSRTSAKVPAHRF----SLMIQTETNEPQVLEHEEVA-WDRTHGTRIELEFTSSLAA-R 185
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
+++ Y++ AV+ P+A+ + E F R +D + P K HP ++L
Sbjct: 186 KRLIDYLKYTAVVNPHARIRVEIDGE------ATTFERVSDEVIRSPQAIKPHPHGIELG 239
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ--IVRI 384
+K + A + TL FL F +GK AE + G G +MA +Q+ + +
Sbjct: 240 TLKRMAAAMPEATLEDFLVESFSRVGKKTAEEIAGAAGLPIKARMAALGAEAQKALLAAM 299
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
+ A P CLSP GE + G+ KE D V + VF GHPF+VEA +
Sbjct: 300 QSVHVPAP---PMSQCLSPIGEELITQGLEKEFQLDFVKARTRPPSVFSGHPFVVEAAIG 356
Query: 445 VGGKDVKQGL-NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT---QDKIGVFV 500
GGK G + RFANR+PL+++QG +T +A+ +NW SY ++Q + V V
Sbjct: 357 YGGKLTADGTAQVMRFANRVPLIYQQGACAIT-SAVSNVNWKSYGLSQAGLPNGPVLVLV 415
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ + E+ + A+Q +LK+ + R+ ++R+Q++R R +
Sbjct: 416 HVASTNVPFTSESKDAVA-SIPEVEKEITLALQDLGRELKAYLSRRDRNRQQEDRARAV 473
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +NK++ GFD+P + + TT++E V+N+LD+ E LP + +++ ++
Sbjct: 12 KSISVAEFFEKNKHLLGFDSPVRGIITTIKEAVDNALDACEEAEVLPDIFVSVRKVSPDA 71
Query: 84 FNSMI 88
+ +
Sbjct: 72 YRVAV 76
>gi|126179532|ref|YP_001047497.1| DNA topoisomerase VI subunit B [Methanoculleus marisnigri JR1]
gi|125862326|gb|ABN57515.1| DNA topoisomerase VI, B subunit [Methanoculleus marisnigri JR1]
Length = 600
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 222/419 (52%), Gaps = 27/419 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+T +DNG G+ +++P +FG++L G+++ ++Q+RG+ G+G A+++++++TG+P
Sbjct: 72 YRITVEDNGPGIVPENVPLVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTTGIPTL 131
Query: 211 ISS----SMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
+ S R+H F +L I N P + HE+ + DR HG I++ + +
Sbjct: 132 VVSRTGAKARAHRF----ELLIRTETNEPEIISHEEI-DWDRTHGTRIEIQFKSTLAA-K 185
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
+++ Y+R A++ P+A+ E+ F R ++ +PP P HP ++
Sbjct: 186 KRLVDYLRLTAIVNPHARITADIDGEMT------VFERVSNEVPPCPKPILPHPHGIEFG 239
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
+K IA + GT+ +FL F +GK A+ +I G P V L S+++ R+
Sbjct: 240 ALK-RIAAANTGTVEEFLIGSFSKVGKKTADEMIALAG--LKPSRKVNKLESEELKRLLD 296
Query: 387 LFRQAKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ K P CLSP GE + G+ KE+ D + + + V+ GH FI+EA +
Sbjct: 297 AMQAVKVPAPPAQQCLSPIGEDLICKGLEKEIQLDFIKARTRPSTVYGGHSFIIEAAIGY 356
Query: 446 GGKDVKQGL-NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VFVS 501
GGK +G +FRFANR+PLL++QG +T A ++NW SY ++Q +G + V
Sbjct: 357 GGKVPPEGTAQLFRFANRVPLLYQQGACAITSCA-SQVNWKSYGLSQQGLPMGPVLIMVH 415
Query: 502 IVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + EI V +Q+ +LK+ + R+ + ++Q +R R +
Sbjct: 416 VASTNVPFTSESKDAVA-SIPEIEREVVLVLQELGRELKTYLYRRDKKKQQDDRARAIC 473
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
S AEFF +NK++ GFD+P + + TT++E V+N+LD+ E LP + + I+++
Sbjct: 15 SVAEFFEKNKHLLGFDSPTRGIITTIKEAVDNALDACEEAEVLPDIFVGIKKV 67
>gi|397779965|ref|YP_006544438.1| DNA topoisomerase VI subunit B [Methanoculleus bourgensis MS2]
gi|396938467|emb|CCJ35722.1| DNA topoisomerase VI subunit B [Methanoculleus bourgensis MS2]
Length = 600
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 221/423 (52%), Gaps = 27/423 (6%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
+ YR+T +DNG G+ +IP +FG++L G+++ ++Q+RG+ G+G A+++++++TG
Sbjct: 68 DTEVYRITVEDNGPGIVPKNIPFVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTTG 127
Query: 207 LPIEISSSM----RSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW 262
P + S ++H F +L I N P + HE+ + DR HG +++ +
Sbjct: 128 TPALVISRTGAREKAHRF----ELMIKTETNEPEIVSHEEI-DWDRTHGTRLEIQFKSTL 182
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
+ ++L Y+R A++ P+A+ EV F R +PP P HP
Sbjct: 183 AA-KKRLLDYLRLTAIVNPHARVTADIDGEVTT------FERVASEVPPCPKPILPHPHG 235
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
++ +K L A+ S GT+ +FL F +G A+ +IG G P VK L + ++
Sbjct: 236 IEFGALKRL-ADASTGTVEEFLIGSFSRVGMKTADEMIGIAG--LKPSRKVKRLDADELK 292
Query: 383 RIHQLFRQAKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEA 441
R+ + K P CLSP GE + G+ KE+ D V + + V GH FI+EA
Sbjct: 293 RLLDAMQSVKVPAPPAQQCLSPIGEDLICRGLEKEIQLDFVRARTRPSAVHGGHSFIIEA 352
Query: 442 GVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG--- 497
+ GGK +G +FRFANR+PLL++QG +T +A+ ++NW SY ++Q +G
Sbjct: 353 AIGYGGKLPAEGNAQLFRFANRVPLLYQQGACAIT-SAVSQVNWKSYGLSQQGLPVGPAL 411
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ V + ST +PF K+ + EI + +Q+ +LK+ + R+ + ++Q +R R
Sbjct: 412 IMVHVASTNVPFTSESKDAVA-SIPEIEREIVLVLQELGRELKAYLSRRERKKQQDDRAR 470
Query: 558 NLS 560
+
Sbjct: 471 AVC 473
>gi|435850857|ref|YP_007312443.1| DNA topoisomerase VI, B subunit [Methanomethylovorans hollandica
DSM 15978]
gi|433661487|gb|AGB48913.1| DNA topoisomerase VI, B subunit [Methanomethylovorans hollandica
DSM 15978]
Length = 622
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 223/425 (52%), Gaps = 30/425 (7%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + + +DNG G+ IPN+F ++L G+++ LKQ+RG+ G+G ++++S+++
Sbjct: 68 RSDKDSLVIMVEDNGPGIVKAQIPNVFAKLLYGSRFHALKQSRGQQGIGISASVLYSQLT 127
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
+G P I S + + +L I+ N P + L E+ + DR HG I++ +E ++
Sbjct: 128 SGHPTRIISKIGQGKSAHYYELMINTSTNEPEI-LKEEIIDWDRHHGTRIELEMEASYVK 186
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R + Y+R A++ P+A+ K + +KN T+ F R TD +P E HP +
Sbjct: 187 GRRQSVTEYLRATAIVNPHARI--KLIE--PDKNETL-FERATDKIPLAAKEILPHPHGI 241
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI------GEMGPEFSPKMAVKSLT 377
+L + ++ T + L FL++ F IG AE + GEM P +
Sbjct: 242 ELGTLMKMLRYTERQKLTPFLRYSFSKIGHLTAEEICKASGLDGEMNPH--------EMN 293
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPF 437
Q ++ F + K P CLSP GE + G+ KE + D +AT S + V+ G+PF
Sbjct: 294 RDQARKLLDAFGKVKIMAPPTDCLSPIGEQLIYKGLEKEFNVDFIATTSRTPSVYSGNPF 353
Query: 438 IVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ----- 491
+VE G++ GG K+ ++I RFANR+PLL++QGG VT A++ I W Y +NQ
Sbjct: 354 LVEVGLAYGGNLQKEDRVDIMRFANRVPLLYQQGG-CVTTHAIESIKWKQYGLNQPGGGL 412
Query: 492 TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
+ + V + ST +PF K+ I D EI S ++ A+++ +L + R+ ++
Sbjct: 413 PTGPVAILVHVASTNVPFTSESKDAIA-DIPEIKSEIELAVKEVGRKLNMYMNRQENLKK 471
Query: 552 QQERK 556
++E++
Sbjct: 472 RREKE 476
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +N+ I GFD+ +SL TT++E V+NSLD+ E LP + + IE K
Sbjct: 14 KSISVAEFFEKNRQILGFDSAPRSLITTIKEAVDNSLDACEEAEILPDILVQIERSDKDS 73
Query: 84 FNSMI 88
M+
Sbjct: 74 LVIMV 78
>gi|414884841|tpg|DAA60855.1| TPA: hypothetical protein ZEAMMB73_957890 [Zea mays]
Length = 232
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/110 (84%), Positives = 104/110 (94%)
Query: 452 QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKG 511
QGLNIFRFANRIPLLFEQG DV+TRTA KRI+WSSYKINQ QDKIGVFVSIVSTKIPFKG
Sbjct: 17 QGLNIFRFANRIPLLFEQGADVITRTAAKRISWSSYKINQQQDKIGVFVSIVSTKIPFKG 76
Query: 512 TGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
TGKEYIGDD EI+SAVKSA++QCC+QLKSKIV+K+Q RE+Q+RKRNL+R
Sbjct: 77 TGKEYIGDDITEISSAVKSALKQCCLQLKSKIVKKLQARERQDRKRNLNR 126
>gi|383320073|ref|YP_005380914.1| DNA topoisomerase VI subunit B [Methanocella conradii HZ254]
gi|379321443|gb|AFD00396.1| DNA topoisomerase VI, B subunit [Methanocella conradii HZ254]
Length = 535
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 207/396 (52%), Gaps = 20/396 (5%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ D +P +FG++L G+++ ++Q+RG+ G+G A++++++++G P I+
Sbjct: 81 VVVEDNGPGVQRDVLPRVFGKLLYGSRFHAIRQSRGQQGIGISAAVLYAQLTSGKPARIT 140
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHY 272
S + +L ID N P + + E ++ G I++ +E + + +L Y
Sbjct: 141 SRIDPKLPAYVYELKIDTETNEPKI-ISENYDDFFTSRGTRIELSLEATYVRGKQSVLEY 199
Query: 273 MRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLI 332
+R A++ P+A+ V EK V F R DV+P PVE K HP ++L + ++
Sbjct: 200 LRNTAIVNPHARI--TLVDPYDEKFV---FERACDVLPRQPVEIKPHPHGIELGTLVKML 254
Query: 333 AETSKGTLLQFLQHEFVNIGKSLAERLIGE--MGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
T L FL F IG E + E + P SP+ K + + + R+ F++
Sbjct: 255 QSTDSHRLSTFLSSSFAKIGGHTMESICREASLDPGMSPQELAKDI--EAVKRLLAAFQK 312
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV 450
K P CLSP + L+ GI + D ++T S V+ G+PF+VEA ++ GG
Sbjct: 313 IKIMAPPKDCLSPITDDLLKKGITQNHRVDFISTVSRPVSVYRGNPFLVEAAIAYGGDID 372
Query: 451 KQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ---TQDKIG---VFVSIV 503
+G I+RFANR+PL+++QG +T A++RINW +Y + Q + IG + V +
Sbjct: 373 SEGRAEIYRFANRVPLMYQQGACAITH-AIERINWKNYGLEQPKGAKAPIGPLMIMVHVA 431
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQL 539
ST +PF K+ I D EI ++ A+++ L
Sbjct: 432 STNVPFTSESKDAIA-DIPEIEDEIELAVREAARDL 466
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 20 ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQK S AEFF +N+ + GFD+ +SL T V+E V+NSLD+ E S LP + I I+
Sbjct: 13 ELAKKQKAISVAEFFEKNRQMLGFDSLPRSLITCVKEAVDNSLDACEEASILPDIYIRIK 72
Query: 78 EI 79
++
Sbjct: 73 KV 74
>gi|302037396|ref|YP_003797718.1| DNA topoisomerase VI subunit B [Candidatus Nitrospira defluvii]
gi|300605460|emb|CBK41793.1| DNA topoisomerase VI, subunit B [Candidatus Nitrospira defluvii]
Length = 662
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/572 (25%), Positives = 260/572 (45%), Gaps = 114/572 (19%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S +EFF +N+++ GFDNP K+L T V+E V+NSLD+ E LP E+T+
Sbjct: 11 REISVSEFFTKNRHLLGFDNPRKALLTCVKEAVDNSLDACEEAGILP--EVTV------- 61
Query: 84 FNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGA 143
R++T A G+ PS
Sbjct: 62 -----------RLET-----------------------------VANGQAPVAPS----- 76
Query: 144 KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSK 202
+A+ +R+T DNG G+ IP +F ++L G+K+ ++ +RG+ G+G A ++ +
Sbjct: 77 ----QATRFRITVTDNGPGIVRQQIPRVFAKLLYGSKFHRMRMSRGQQGIGISAAGMYGQ 132
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD-RW---HGAEIQVVI 258
++TG P+++ S + ++ ID +N P VH ENK W G E+ + +
Sbjct: 133 LTTGKPVKVISRTGPRAAAHYFEVQIDTKKNEPLVH-----ENKQIDWAQPQGTEVALEV 187
Query: 259 EGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH 318
EG + R+ + ++ Q ++ P+ + ++ + T + R +PP P E K
Sbjct: 188 EGRYQKGRASVDEWLEQTSIANPHVRLVYH-----TPEGETKEYPRTYHELPPSPKEIKP 242
Query: 319 HPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
HP ++ + ++ +T T+ FL +F + +LAE + + SP + +
Sbjct: 243 HPYGIEFGALLKMLQDTKSHTVAGFLASDFCRVSPALAEEIC--KAAKVSPATKPRDVKH 300
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
Q +++ + K P C+SP GE + G+ K++ + S V+ G+PFI
Sbjct: 301 QAAETLYKTIQTTKIMAPPTNCISPIGEKAILSGLYKQIKGEFYTAVSRPPAVYRGYPFI 360
Query: 439 VEAGVSVG----------------------GKDVKQGLNIFRFANRIPLLFEQGGDVVTR 476
+EAG++ G G D +Q + R+ANR+PLL++Q T
Sbjct: 361 IEAGLAFGKGPEEAAKPQQASVPLAEGEDQGNDTEQA-RVIRYANRVPLLYQQSA-CATF 418
Query: 477 TAMKRINWSSYKINQTQDKIG-----VFVSIVSTKIPFKGTGKEYIGDD---TKEIASAV 528
A+ W +Y ++Q++ + +FV + S +PF KE I D KEI A+
Sbjct: 419 KAVLSTTWRNYGVSQSRGALPAGPMVIFVHMASVWVPFTSESKEAIADYDEIQKEITLAL 478
Query: 529 KSAIQQCCIQLKSKIVRKIQDREQQE-RKRNL 559
+ A ++ I L+ + +R E R+RN+
Sbjct: 479 REAGRRLGIFLRRR------ERAASEFRRRNI 504
>gi|153005630|ref|YP_001379955.1| DNA topoisomerase VI subunit B [Anaeromyxobacter sp. Fw109-5]
gi|152029203|gb|ABS26971.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter sp. Fw109-5]
Length = 697
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 161/604 (26%), Positives = 272/604 (45%), Gaps = 135/604 (22%)
Query: 22 ALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
A KQ+ S +EFF +N+++ GFDNP K+L TT++E V+NSLD+ E LP E+TIE
Sbjct: 97 AAKQREISISEFFTKNRHLLGFDNPSKALLTTIKEAVDNSLDACEEAGILP--EVTIE-- 152
Query: 80 GKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSA 139
++ ALG K
Sbjct: 153 ---------------------------------------------VRDLALGPK------ 161
Query: 140 TKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMAL 198
+G +GE F V +DNG G+ P +FG++L G+K+ LKQ+RG+ G+G A
Sbjct: 162 GEGELTKGEGRFV-VVIEDNGPGIVKAQAPKIFGKLLYGSKFHRLKQSRGQQGIGISAAA 220
Query: 199 IWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW---HGAEIQ 255
++ +++TG PI ++S + ++ ID +N P V E R+ D W HG ++
Sbjct: 221 MYGQLTTGQPIRVTSRTGKGKPAHYFEIQIDTRKNNPVV--TEDRQ-LDEWHLEHGTRVE 277
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
+ I NW T + + Y+ A+ P+A + V + I F R T+ +P E
Sbjct: 278 LEIVANWQTGQRFVNRYVEHTALSNPHATVHY-----VRPRQERISFPRATEELPKEASE 332
Query: 316 TKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKS 375
K HP V+L + + +++ + FLQ F + +A+ ++ G F ++ +
Sbjct: 333 IKPHPHGVELGALMLMASDSKAHDVKGFLQTAFSRVSGQVADEIVKRAG--FKGRVRPRD 390
Query: 376 LTSQQIV--RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELH--------------- 418
+ + + V ++H+ K +P CLSP G+ ++ G+I L+
Sbjct: 391 VAADRAVADKLHKAIGATKIMNPPTNCLSPIGDELMKRGLISFLNVIETEGPETDEQLDL 450
Query: 419 ----------------------PD---------------MVATYSGSAQVFEGHPFIVEA 441
PD +AT + +V+ G+PF VE
Sbjct: 451 DHAAKKKTSRKEKQAKAAAPEVPDAPPEEGVEKIKGHNYFIATVTRPPKVYRGNPFQVEV 510
Query: 442 GVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-- 498
G++ GG + + +FRFANR+PLLF++G +T A+ + +W +Y ++Q + + V
Sbjct: 511 GLAYGGSWPADKTIELFRFANRVPLLFQRGACGMT-DAIAKTDWRNYLLSQPKGALPVGP 569
Query: 499 ---FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
V I S +PF KE + EI ++ A Q+C +L + I RK Q + Q +
Sbjct: 570 MALLVHIASVWVPFTSEAKEAVA-HYPEIIREIQLAAQECGRKLAAHI-RKKQHADYQAQ 627
Query: 556 KRNL 559
+R++
Sbjct: 628 RRSI 631
>gi|298675295|ref|YP_003727045.1| DNA topoisomerase VI subunit B [Methanohalobium evestigatum Z-7303]
gi|298288283|gb|ADI74249.1| DNA topoisomerase VI, B subunit [Methanohalobium evestigatum
Z-7303]
Length = 622
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 220/413 (53%), Gaps = 22/413 (5%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++S+++TGL +I
Sbjct: 76 VIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYSQLTTGLQTKIV 135
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKILH 271
S + + + ++ I+ N P + L ++ + DR HG +++ +E ++ R I
Sbjct: 136 SKIGPESPAHYYEVMINTSTNDPEI-LKDEIVDWDRPHGTRVEMEMEASYVKGRRQSIQE 194
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++ A++ P+A+ + I F R TD +P P E HP +++ + +
Sbjct: 195 YLKATAIVNPHARLTL-----IEPDGNEIVFERVTDKLPKAPDEILPHPHGIEMGTLMKM 249
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391
+ T + + FL++ F IG + A+ + G +F + + +T + ++ + F +
Sbjct: 250 LRYTERQKVGAFLRYSFSKIGLNTADEICKTAGLDFEKEP--REITRLEAKKLLEAFSKV 307
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG---K 448
K P CLSP GE G+ KE + D +AT + S V+ G+PFIVE G++ GG K
Sbjct: 308 KIMSPPTNCLSPIGEKLTYKGLNKEFNVDFIATTTRSPSVYSGNPFIVEVGIAYGGDLPK 367
Query: 449 DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG-----VFVSIV 503
D K ++I RFANR+PLL++QGG VT A++ I W Y +NQ I + V +
Sbjct: 368 DDK--IDIMRFANRVPLLYQQGG-CVTTHAVESIKWKQYGLNQPGGGIPTGPAVILVHVA 424
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
ST +PF K+ I D EI ++ I+ +L I R+ ++++E++
Sbjct: 425 STNVPFTSESKDAIA-DIPEIKDEIELGIKDVARKLNRYINRQGTLKKRREKE 476
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
S AEFF +N+ I GFD+ +SL TTV+E V+N+LD+AE LP + + IE GK
Sbjct: 17 SVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDAAEESGILPDILLQIERTGKDTLAV 76
Query: 87 MI 88
+I
Sbjct: 77 II 78
>gi|154151277|ref|YP_001404895.1| DNA topoisomerase VI subunit B [Methanoregula boonei 6A8]
gi|153999829|gb|ABS56252.1| DNA topoisomerase VI, B subunit [Methanoregula boonei 6A8]
Length = 600
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 220/420 (52%), Gaps = 27/420 (6%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+R+ +DNG G+ +P +FG++L G+++ ++QTRG+ G+G A++++++++GLP
Sbjct: 71 IFRIIVEDNGPGIVPAQVPFVFGKLLYGSRFHQIRQTRGQQGIGISAAVLYAQLTSGLPT 130
Query: 210 EISSSM----RSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
+ S ++H F + I I N P V + E+ DR HG +Q+ + +
Sbjct: 131 VVISRTGVKEQAHKF----GIQIKIETNEPDV-ISEQPFEWDRIHGTRVQIEFKSTMSA- 184
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
+ K+L Y+R +++ P+A+F + E F R + + PV + HP ++
Sbjct: 185 KKKLLEYLRYTSIVNPHARFRVELDDE------AFTFERVSQEVIACPVAIQPHPHGIEF 238
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+K + A S L+ FL + F +GK A+ + G + + K+A L++ ++ +
Sbjct: 239 GQLKRM-AAASDEKLIDFLVNGFSRVGKKTAQEMCDRAGLKVTAKVA--GLSADELKNLL 295
Query: 386 QLFRQAKFD-DPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
+ P+ CLSP GE +R G+ KE D VA + + V+ GHPF+VEA +
Sbjct: 296 AAMQAVAVPAPPTSQCLSPIGEDLIRRGLDKEFQMDFVAARTRPSSVYSGHPFVVEAAIG 355
Query: 445 VGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VFV 500
GG+ +G I RFANR+PL+++QG +T + +NW SY I+Q +G + V
Sbjct: 356 YGGRLEAEGNATILRFANRVPLMYQQGACAITE-CIANVNWKSYNISQQGLPLGPVLILV 414
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ I D EI + A+Q +LK+ + R+ +++ ++R R +
Sbjct: 415 HVASTNVPFTSESKDAIA-DIPEIEKEIVLALQDLGRELKTFLSRRDRNKLAEDRARAVC 473
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
S AEFF +NK++ GFD+P + + TT++E V+N+LD+ E LP + I+I++ G F
Sbjct: 15 SVAEFFEKNKHLLGFDSPTRGVITTIKEAVDNALDACEEAQVLPDIYISIKKTGPEIFRI 74
Query: 87 MI 88
++
Sbjct: 75 IV 76
>gi|330507582|ref|YP_004384010.1| DNA topoisomerase VI subunit B [Methanosaeta concilii GP6]
gi|328928390|gb|AEB68192.1| DNA topoisomerase VI, B subunit [Methanosaeta concilii GP6]
Length = 611
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 225/417 (53%), Gaps = 23/417 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+++V +DNG G+ ++IP +F ++L G+++ L+Q+RG+ G+G +++S++++G P
Sbjct: 70 YFQVIVEDNGPGIVPEEIPRVFAKLLYGSRFHTLRQSRGQQGIGISAGVLYSQLTSGRPT 129
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT-TYRSK 268
+ S + +C+L I+ +N P + + + + +R G +++ +EG++ + R
Sbjct: 130 RVISKIAPDRPAYYCELMINTSKNEPEI-IKAEEVDWERPRGTRVEMEMEGSYVRSRRQS 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ ++ A++ P+A+ E NV + F R T+ +P + HP ++L +
Sbjct: 189 VYGSLKSAAIVNPHARLTLV----EPEGNVEV-FERATESLPKKAYAIQPHPEGIELGEL 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLI--GEMGPEFSPKMAVKSLTSQQIVRIHQ 386
L+ T K L FL+ F +IG A+ L ++ PE P SL + VR+
Sbjct: 244 IKLLRYTDKKKLRVFLKETFSSIGTISAQELCKKADLDPEAPPA----SLDHDEAVRLLL 299
Query: 387 LFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
F+Q + P CLSP GE +R G+ KE D +AT + V+ G+PF+VE G+ G
Sbjct: 300 AFKQIRVKSPPVDCLSPIGEELIRAGLEKEFRLDFIATTTRPVSVYSGNPFLVEVGLGYG 359
Query: 447 GKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---IG---VF 499
G+ ++G + I RFANR+PL+++QG +T A++ ++W +Y ++Q+ +G +
Sbjct: 360 GELAREGRIEILRFANRVPLVYQQGACAITH-AVESVSWKNYSLSQSAGSGIPVGPAVLL 418
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
V I ST IPF K+ + D EI + +++ +L+ + R+ E++E++
Sbjct: 419 VHIASTNIPFTSESKDAVA-DMPEILVEIDLGLKEVARKLRRYLSRQSLLSERREKE 474
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 20 ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A +QK S AEFF +N+ I GFD+ ++L T V+E V+NSLD+ E LP + + I+
Sbjct: 6 ELAKQQKAISVAEFFEKNRQILGFDSAPRALITCVKEAVDNSLDACEDAGILPDIFVQIK 65
Query: 78 EIGK 81
+ G+
Sbjct: 66 KSGE 69
>gi|410672035|ref|YP_006924406.1| DNA topoisomerase VI subunit B [Methanolobus psychrophilus R15]
gi|409171163|gb|AFV25038.1| DNA topoisomerase VI subunit B [Methanolobus psychrophilus R15]
Length = 622
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 215/414 (51%), Gaps = 20/414 (4%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G +++++++++G P ++
Sbjct: 76 VIVEDNGPGIVKEQIPKVFAKLLYGSRFHALKQSRGQQGIGISASVLYAQLTSGHPAKVI 135
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKILH 271
S + +C+L I+ N P + L ++ + DR HG I++ +E + R I
Sbjct: 136 SKIGPGKPAHYCELMINTSTNEPEI-LRDEVVDWDRPHGTRIELEMEAAYVKGRRQSIYE 194
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++ A++ P+A+ F + E + F R TD MP E HP ++L + +
Sbjct: 195 YLKSTAIVNPHARITL-FEPDGNE----VVFERATDKMPVPANEILPHPHGIELGTLMKM 249
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391
+ T + L FL++ F IG AE + G P M ++ Q ++ F +
Sbjct: 250 LRYTERQKLSPFLRYSFSKIGHLTAEEICKASG--LDPDMDPHEMSRDQSRKLLDAFAKV 307
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVK 451
K P CLSP GE + G+ KE D +AT + + VF G+PF+VE G++ GG K
Sbjct: 308 KIMAPPTDCLSPIGEDLIYKGLEKEFSVDFIATTTRAPAVFSGNPFVVEVGIAYGGALHK 367
Query: 452 QG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ-----TQDKIGVFVSIVST 505
+ I RFANR+PLL++QGG V T A++ I W Y +NQ + + + + ST
Sbjct: 368 DDRIEIMRFANRVPLLYQQGGCVATH-AIESIKWKQYGLNQPGGALPSGPVVLLIHVAST 426
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+PF K+ I D EI ++ A+++ +L + + QD ++ R++ +
Sbjct: 427 NVPFTSESKDAIA-DIPEIKDEIELAVKEVSRKLSRYLSK--QDTLKKRREKEI 477
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
K S AEFF +N+ I GFD+ +SL TTV+E V+NSLD+ E LP + + IE GK
Sbjct: 14 KSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNSLDACEESQILPDILLHIERSGK 71
>gi|359415975|ref|ZP_09208355.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358033693|gb|EHK02218.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 508
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 223/426 (52%), Gaps = 31/426 (7%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DN G+ + IP +FG++L G+K+ L+Q+RG+ G+G + ++++++TG P+ +
Sbjct: 78 RVEIRDNAIGLDRETIPKVFGKLLYGSKFHKLQQSRGQQGIGISASAMYAQLTTGEPVTV 137
Query: 212 SSSMR---SHNFISFCKLDIDIHRNIPHVHLHEKRE--------NKDRW--HGAEIQVVI 258
S H F+ + ID N P++ E E +KD + HG I++ I
Sbjct: 138 YSKQEGEPCHKFV----VTIDTETNEPNIIEDEVIEPESDEFPGDKDYYFDHGTTIEMNI 193
Query: 259 EGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH 318
E +T + +Y++ A++ PYA+ + + + F R + +P E K
Sbjct: 194 EAKYTHGHHSVFNYLKHTAIMNPYARVVLR-----EPDGNKVEFPRVSRELPKKSKEIKP 248
Query: 319 HPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
HP V+L ++ +I +S T+ FLQ+EF +G++ AE + E + +L
Sbjct: 249 HPHGVELGVMMRMIENSSARTITSFLQNEFTRVGRTSAEEICDEA--DMDTGRRPNTLEK 306
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
+I + + + K P CLSP GE + G+ KEL+P+ + S V++G+PF
Sbjct: 307 DEIETLLKAAQNVKLQSPPTDCLSPIGEDLVLKGLKKELNPEFSTAITRSPTVYKGNPFQ 366
Query: 439 VEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT---QD 494
+E G++ GG +G + RFAN++PLL+++ V T+ A++ ++W+ Y I+QT Q
Sbjct: 367 IEVGLAWGGDIEDEGSFDELRFANKVPLLYKKSSCVTTK-AIEEVSWNRYNISQTGRPQG 425
Query: 495 KIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQE 554
+ + V I S +PF GKE + + I +K A+Q+ +L I RK + Q++
Sbjct: 426 PLYILVHIASVWVPFTSEGKEAVA-NYDPIRKEMKLALQEAGRKLGRYIGRKERKAIQEK 484
Query: 555 RKRNLS 560
+KR L+
Sbjct: 485 KKRQLT 490
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP + + I+EIG K
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILPEIHVLIDEIGDKK 76
Query: 84 F-----NSMIGLVDRERV 96
++ IGL DRE +
Sbjct: 77 CRVEIRDNAIGL-DRETI 93
>gi|352681954|ref|YP_004892478.1| type II DNA topoisomerase VI subunit B, partial [Thermoproteus
tenax Kra 1]
gi|350274753|emb|CCC81399.1| type II DNA topoisomerase VI, subunit B [Thermoproteus tenax Kra 1]
Length = 373
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 176/316 (55%), Gaps = 16/316 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
++ + +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++++ +T PI
Sbjct: 69 WFSIYVEDNGVGIPGNEIPNVFGRVFYSSKYKIKQHRGVFGLGLKMVVLYAQSTTNRPIA 128
Query: 211 I-SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+ S+S+RS + KL ID +N P + + ENK +WHG ++V IEGNW + +I
Sbjct: 129 VRSASVRSDKIYEY-KLMIDTTKNEPIIVDVREFENKYKWHGTAVKVTIEGNWLNSKKRI 187
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+++ A+I+PY++ F + ++ + RRT MPP P E HP SVD+ +K
Sbjct: 188 EEYLKRTAIISPYSEIYF------SGPDMELALKRRTTKMPPPPKEGLPHPKSVDVDTVK 241
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+IA+ TL++ L + F +G+ LA+ + G SP LT ++IV H + +
Sbjct: 242 QMIADNRGATLIELLMNNFDRVGEGLAKAFLEWAG--LSPTRKAGGLTQEEIV--HLVEK 297
Query: 390 QAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
+D P LSPAG L +G L + V + + GHPFIVEA ++ G
Sbjct: 298 MKTYDGWLRPRADWLSPAGPELLEVGAKSILGAEAVFAVTRKPSSYSGHPFIVEAAIAWG 357
Query: 447 GK-DVKQGLNIFRFAN 461
G+ + + R+AN
Sbjct: 358 GQIPLVDKPILLRYAN 373
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
AE+F N+ IAGF NP +++Y TVRELVENSLD+ E LP + + I + +++
Sbjct: 13 AEWFRRNREIAGFQNPARAMYQTVRELVENSLDATEPYGILPNIIVRISAVDETR 67
>gi|91773184|ref|YP_565876.1| DNA topoisomerase VI subunit B [Methanococcoides burtonii DSM 6242]
gi|121689247|sp|Q12WQ0.1|TOP6B_METBU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|91712199|gb|ABE52126.1| DNA topoisomerase, type VI subunit B [Methanococcoides burtonii DSM
6242]
Length = 622
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 213/411 (51%), Gaps = 18/411 (4%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G ++++++++ G P +
Sbjct: 76 VIVEDNGPGIVKEQIPKVFAKLLYGSRFHALKQSRGQQGIGISASVLYAQLTAGHPTSVI 135
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKILH 271
S + + ++ I+ N P + L E + DR HG +++ +E ++ R I
Sbjct: 136 SKIGPDSPAHHYEVMINTSTNDPEILLDEVI-DWDRPHGTRVELEMEASYVKGRRQSIYE 194
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++ A++ P+A+ + + F R TD +P E HP ++L + +
Sbjct: 195 YLKATAIVNPHARLTL-----IEPDGNEVIFDRATDKLPIPAKEILPHPHGIELGTLMKM 249
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391
+ T + L FL++ F IG AE + G +M LT Q ++ F++
Sbjct: 250 LRYTDRQKLAPFLRYSFSKIGLLTAEEICKAAG--LDTEMLPSKLTRDQTKKLLDAFKKV 307
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVK 451
K P CLSP GE + G+ KE + D +AT + S VF G+PF+VE G++ GG K
Sbjct: 308 KIMAPPTDCLSPIGEELIYKGLEKEFNVDFIATTTRSPSVFSGNPFVVEVGIAYGGVLQK 367
Query: 452 QG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ-----TQDKIGVFVSIVST 505
++I RFANR+PLL++QGG T A++ I W Y +NQ + + V + ST
Sbjct: 368 DDRIDIMRFANRVPLLYQQGG-CATTHAVEGIKWKQYGLNQPGGGMPTGPVVLLVHVAST 426
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+PF K+ I D EI V+ AI++ +L + R++ ++++E++
Sbjct: 427 NVPFTSESKDAIA-DIPEIRDEVELAIKEVSRKLNRYLNRQVSLKKRREKE 476
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQ+ S AEFF +N+ I GFD+ +SL TTV+E V+NSLD+ E LP + + IE
Sbjct: 8 ELAKKQQAISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNSLDACEEAEILPDILLHIE 67
Query: 78 EIGKSKFNSMI 88
+GK + ++
Sbjct: 68 RVGKDNVSVIV 78
>gi|254167389|ref|ZP_04874241.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
gi|197623652|gb|EDY36215.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
Length = 680
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 214/413 (51%), Gaps = 34/413 (8%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+ +IP +FG++L G+++ ++Q+RG+ G+G +++ +++TG P
Sbjct: 105 YKIIVEDNGPGIIRRNIPLVFGKLLYGSRFHAIRQSRGQQGIGISAVVLYGQLTTGKPTR 164
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ S ++ L ID +N P V + E + DR G I++ I + + +
Sbjct: 165 VISKIKEEEVAYEVLLTIDTKKNEPRV-IKEIPKIWDREQGTRIEISIRARYVRGKQSVY 223
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++Q A++ P+AQ FV +K + F R TD +PP E K HP ++L +
Sbjct: 224 EYLQQTAIVNPHAQI--TFVEPDGKKTI---FKRATDKLPPRTREIKPHPHGIELGELLN 278
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAER------LIGEMGPEFSPKMAVKSLTSQQIVRI 384
+ T L FL +EF + +AE L G+M P+ L+ ++ R+
Sbjct: 279 MARNTKTYRLTSFLTNEFSRVSPKIAEEICKKAYLYGDMRPQ--------ELSIEEAKRL 330
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLG---IIKELHPDMVA-TYSGSAQVFEGHPFIVE 440
+ F++ K P CLSP GE ++ G ++ L P A + + +V+ G+PF+VE
Sbjct: 331 LEAFKKVKLMAPPTDCLSPIGETLIKKGLKNVLGSLRPSFYAQPVTRTPKVYSGNPFVVE 390
Query: 441 AGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---I 496
G+ GG+ K Q + I RFANR+PLL++QG V T+ A+ ++W Y + Q + +
Sbjct: 391 VGLVYGGELPKDQPVRILRFANRVPLLYQQGACVTTK-AISSVDWRRYGLEQRGGQGIPV 449
Query: 497 G---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
G + V + ST++PF KE I D EI ++ A++ QL+ V+K
Sbjct: 450 GPAIILVHVASTRVPFTSEAKEAIA-DVPEIREEIELALKSLGRQLRLYNVKK 501
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK I GFD+ K+L +V+E V+NSLD+ E LP + + I+ + K +
Sbjct: 45 REISVAEFFEKNKQILGFDSLTKALVVSVKEAVDNSLDACEEAEILPDIYVEIQNVSKDE 104
Query: 84 FNSMI 88
+ ++
Sbjct: 105 YKIIV 109
>gi|88604152|ref|YP_504330.1| DNA topoisomerase VI subunit B [Methanospirillum hungatei JF-1]
gi|88189614|gb|ABD42611.1| DNA topoisomerase VI, B subunit [Methanospirillum hungatei JF-1]
Length = 606
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 216/421 (51%), Gaps = 23/421 (5%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E ++V +DNG G+ ++IP +FG++L G+++ ++Q+RG+ G+G A++++++++G
Sbjct: 73 EGDIFKVVVEDNGPGIVPENIPYVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTSG 132
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P + S S + I N P + L + DR HG I++ + + T R
Sbjct: 133 RPTLVISRCGSDRPAFRFLVQIKTETNEPEI-LKREETTWDRVHGTRIEIEFKSSLTA-R 190
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTD--VMPPVPVETKHHPSSVD 324
+++ Y+R +V+ P+A+ + E I F R +D ++PP + HP V+
Sbjct: 191 KRLIEYLRYTSVVNPHARIRVEIDGE------AILFDRASDEPIIPPQAI--LPHPHGVE 242
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRI 384
L +K IA SK L FL + F +G+ A +I G + + K L + + R+
Sbjct: 243 LGELK-RIAAGSKEPLEPFLINSFSRVGQKTAHEIIQLAGLKETTK--ANKLDADGLARL 299
Query: 385 HQLFRQAKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+Q K P CLSP GE +R G+ KE D + + A V+ GHPFIVEA +
Sbjct: 300 QSAMQQVKVPPPPANQCLSPIGEVLIRQGLEKEFQFDFCSARTRPASVYHGHPFIVEAAL 359
Query: 444 SVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VF 499
GGK D + I RFANR+PL+++QG +T + +NW +Y I+Q+ G +
Sbjct: 360 GYGGKLDAEGNARIMRFANRVPLMYQQGACAIT-GCISAVNWRTYNISQSGLPTGPVLIL 418
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
V + ST +PF K+ I EI + A+Q+ LK+ + R+ + R +ER R +
Sbjct: 419 VHVASTNVPFTSESKDAIA-SIPEIEREITLALQELGRDLKTFLSRRDKSRLSEERARAI 477
Query: 560 S 560
Sbjct: 478 C 478
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 12 SKSPKTPNESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISEL 69
S P ++ A +Q+S AEFF +NK++ GFD+P + + TTV+E ++N+LD+ E L
Sbjct: 3 SPKPAHADDLAKQQRSISVAEFFEKNKHLLGFDSPTRGIVTTVKEAIDNALDACEEAGVL 62
Query: 70 PVVEITIEEIGKSKFNSMI 88
P + + I ++ F ++
Sbjct: 63 PDIYLGIFQMEGDIFKVVV 81
>gi|289596417|ref|YP_003483113.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
gi|289534204|gb|ADD08551.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
Length = 663
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 213/413 (51%), Gaps = 34/413 (8%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+ +IP +FG++L G+++ ++Q+RG+ G+G +++ +++TG P
Sbjct: 88 YKIIVEDNGPGIIRRNIPLVFGKLLYGSRFHAIRQSRGQQGIGISAVVLYGQLTTGKPTR 147
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ S ++ L ID +N P V + E + DR G I++ I + + +
Sbjct: 148 VISKIKEEEVAYEVLLTIDTKKNEPRV-IKEIPKIWDREQGTRIEISIRARYVRGKQSVY 206
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++Q A++ P+AQ FV +K + F R TD +PP E K HP ++L +
Sbjct: 207 EYLQQTAIVNPHAQI--TFVEPDGKKTI---FKRATDKLPPPTREIKPHPHGIELGELLN 261
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAER------LIGEMGPEFSPKMAVKSLTSQQIVRI 384
+ T L FL +EF + + E L G+M P+ L+ ++ R+
Sbjct: 262 MARNTKTYRLTSFLTNEFSRVSPKITEEICKKAYLYGDMRPQ--------ELSIEEAKRL 313
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLG---IIKELHPDMVA-TYSGSAQVFEGHPFIVE 440
+ F++ K P CLSP GE ++ G ++ L P A + + +V+ G+PF+VE
Sbjct: 314 LEAFKKVKLMAPPTDCLSPIGETLIKKGLKNVLGSLRPSFYAQPVTRTPKVYSGNPFVVE 373
Query: 441 AGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---I 496
G+ GG+ K Q + I RFANR+PLL++QG V T+ A+ ++W Y + Q + +
Sbjct: 374 VGLVYGGELPKDQPVRILRFANRVPLLYQQGACVTTK-AISSVDWRRYGLEQRGGQGIPV 432
Query: 497 G---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
G + V + ST++PF KE I D EI ++ A++ QL+ V+K
Sbjct: 433 GPAIILVHVASTRVPFTSEAKEAIA-DVPEIREEIELALKSLGRQLRLYNVKK 484
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK I GFD+ K+L +V+E V+NSLD+ E LP + + I+ + K +
Sbjct: 28 REISVAEFFEKNKQILGFDSLTKALVVSVKEAVDNSLDACEEAEILPDIYVEIQNVSKDE 87
Query: 84 FNSMI 88
+ ++
Sbjct: 88 YKIIV 92
>gi|432330699|ref|YP_007248842.1| DNA topoisomerase VI, B subunit [Methanoregula formicicum SMSP]
gi|432137408|gb|AGB02335.1| DNA topoisomerase VI, B subunit [Methanoregula formicicum SMSP]
Length = 609
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 219/422 (51%), Gaps = 27/422 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGL 207
+ +R+ +DNG G+ +P +FG++L G+++ ++QTRG+ G+G A++++++++GL
Sbjct: 78 SDLFRIIVEDNGPGIVPKQVPFVFGKLLYGSRFHQIRQTRGQQGIGISAAVLYAQLTSGL 137
Query: 208 PIEISSSM----RSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT 263
P + S ++H F ++ I I N P V L E+ + DR HG +Q+ +
Sbjct: 138 PTIVISRTGAKEQAHRF----EIQIKIETNEPDV-LKEEAIDWDRIHGTRVQIEFKSTMA 192
Query: 264 TYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
+ K+L Y++ +V+ P+A+F + E F R + + PV + HP +
Sbjct: 193 A-KKKLLEYLKYTSVVNPHARFRVELDDE------AFTFERVSQEVIQCPVAIQPHPHGI 245
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT-SQQIV 382
+L +K ++A S L+ FL F +GK A+ + G + V+ L+ QQ
Sbjct: 246 ELGQLKRMVA-ASDQKLIDFLVEGFSRVGKKTAQEMCDRAG--LKGTLKVQGLSVDQQKA 302
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAG 442
+ + + P+ CLSP GE +R G+ KE D V+ + + VF GHPF+VEA
Sbjct: 303 LLAAMQEVSVPAPPTTQCLSPIGEELIRRGLDKEFQMDFVSARTRPSSVFSGHPFVVEAA 362
Query: 443 VSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---V 498
+ GGK +G I RFANR+PL+++QG +T + +NW SY ++Q +G +
Sbjct: 363 IGYGGKLPAEGNAIILRFANRVPLMYQQGACAITE-CITNVNWKSYNLSQQGLPMGPVLI 421
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRN 558
V + ST +PF K+ I EI + A+Q +LK+ + R+ + + ++R R
Sbjct: 422 LVHVASTNVPFTSESKDAIA-SIPEIEKEIVLALQDLGRELKTFLSRRDRSKLAEDRARA 480
Query: 559 LS 560
+
Sbjct: 481 VC 482
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
S AEFF +NK++ GFD+P + + TT++E V+NSLD+ E LP + I+I++ G F
Sbjct: 24 SVAEFFEKNKHLLGFDSPTRGVITTIKEAVDNSLDACEEAQVLPDIFISIKKTGSDLFRI 83
Query: 87 MI 88
++
Sbjct: 84 IV 85
>gi|254166785|ref|ZP_04873639.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
gi|197624395|gb|EDY36956.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
Length = 681
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 213/413 (51%), Gaps = 34/413 (8%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+ +IP +FG++L G+++ ++Q+RG+ G+G +++ +++TG P
Sbjct: 106 YKIIVEDNGPGIIRRNIPLVFGKLLYGSRFHAIRQSRGQQGIGISAVVLYGQLTTGKPTR 165
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ S ++ L ID +N P V + E + DR G I++ I + + +
Sbjct: 166 VISKIKEEEVAYEVLLTIDTKKNEPRV-IKEIPKIWDREQGTRIEISIRARYVRGKQSVY 224
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++Q A++ P+AQ FV +K + F R TD +PP E K HP ++L +
Sbjct: 225 EYLQQTAIVNPHAQI--TFVEPDGKKTI---FKRATDKLPPPTREIKPHPHGIELGELLN 279
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAER------LIGEMGPEFSPKMAVKSLTSQQIVRI 384
+ T L FL +EF + + E L G+M P+ L+ ++ R+
Sbjct: 280 MARNTKTYRLTSFLTNEFSRVSPKITEEICKKAYLYGDMRPQ--------ELSIEEAKRL 331
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLG---IIKELHPDMVA-TYSGSAQVFEGHPFIVE 440
+ F++ K P CLSP GE ++ G ++ L P A + + +V+ G+PF+VE
Sbjct: 332 LEAFKKVKLMAPPTDCLSPIGETLIKKGLKNVLGSLRPSFYAQPVTRTPKVYSGNPFVVE 391
Query: 441 AGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---I 496
G+ GG+ K Q + I RFANR+PLL++QG V T+ A+ ++W Y + Q + +
Sbjct: 392 VGLVYGGELPKDQPVRILRFANRVPLLYQQGACVTTK-AISSVDWRRYGLEQRGGQGIPV 450
Query: 497 G---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
G + V + ST++PF KE I D EI ++ A++ QL+ V+K
Sbjct: 451 GPAIILVHVASTRVPFTSEAKEAIA-DVPEIREEIELALKSLGRQLRLYNVKK 502
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK I GFD+ K+L +V+E V+NSLD+ E LP + + I+ + K +
Sbjct: 46 REISVAEFFEKNKQILGFDSLTKALVVSVKEAVDNSLDACEEAEILPDIYVEIQNVSKDE 105
Query: 84 FNSMI 88
+ ++
Sbjct: 106 YKIIV 110
>gi|71483086|gb|AAZ32519.1| DNA topoisomerase VI subunit B [uncultured euryarchaeote Alv-FOS4]
Length = 631
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 207/407 (50%), Gaps = 34/407 (8%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+ +DNG G+ +IP +FG++L G+++ L+Q+RG+ G+G +++ ++STG P
Sbjct: 72 YRMIVEDNGPGIVRKNIPLVFGKLLYGSRFHALRQSRGQQGIGISAVVLYGQLSTGKPAR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I S ++ L ID +N P + + E+ DR G I+VV+ + + +
Sbjct: 132 IISKIKEEEVAYEVLLTIDTKKNAPKI-IKEEPVIWDREQGTRIEVVMRTRYNRGKQSVY 190
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++Q A++ P+AQ + K V F R + +PP E K HP ++L
Sbjct: 191 EYLQQTAIVNPHAQ--ITLIEPDGRKTV---FKRVAEQLPPPVREIKPHPHGIELGEFIN 245
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLI------GEMGPEFSPKMAVKSLTSQQIVRI 384
L T + FL EF + +AE++ G+M P+ L+ + RI
Sbjct: 246 LARTTKAYRITSFLTSEFTRVSPKIAEKICSIACVYGDMRPQ--------ELSLSEARRI 297
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLG---IIKELHPDMVA-TYSGSAQVFEGHPFIVE 440
+ F + K P CLSP GE ++ G ++ L P A + +V+ G+PFIVE
Sbjct: 298 LEAFSRVKLMAPPTDCLSPIGETLIKKGLKNVLGALRPGFYAQPITREPKVYGGNPFIVE 357
Query: 441 AGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---I 496
AG+ GG K Q + I RFANR+PLL++QG DV+T+ A+ ++W Y + Q + +
Sbjct: 358 AGIVYGGDLPKDQQVRILRFANRVPLLYQQGADVITK-AISSVDWRRYGLEQRGGQGIPV 416
Query: 497 G---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLK 540
G + V + ST++PF KE I + EI ++ A++ QL+
Sbjct: 417 GPAIILVHVASTRVPFTSEAKEAIA-EVPEIREEIELALKSLGRQLR 462
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 19 NESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
+E A KQ+ S AEFF +N+++ GFD+ KSL +V+E V+NSLD+ E LP + + I
Sbjct: 5 HEMAKKQREISVAEFFEKNRHVLGFDSLPKSLVVSVKEAVDNSLDACEEARILPDITVQI 64
Query: 77 EEIGKSKFNSMI 88
E++GK ++ ++
Sbjct: 65 EQVGKDEYRMIV 76
>gi|124485243|ref|YP_001029859.1| DNA topoisomerase VI subunit B [Methanocorpusculum labreanum Z]
gi|124362784|gb|ABN06592.1| DNA topoisomerase VI, B subunit [Methanocorpusculum labreanum Z]
Length = 600
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 217/417 (52%), Gaps = 25/417 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+RV +DNG G+ + +P++F ++L G+++ ++QTRG+ G+G A+++++++TG P
Sbjct: 72 FRVVVEDNGPGIVPEKMPSVFAKLLYGSRFHQVRQTRGQQGIGISAAVLYAQLTTGKPTI 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW---HGAEIQVVIEGNWTTYRS 267
++S + N L I N P V HE+ + W HG +Q+ + N R
Sbjct: 132 VTSRTDAKNKAHTMSLVIKTETNEPEVLSHEEVD----WILPHGTRVQLEFKSNIAA-RK 186
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
K++ Y++ +++ P+A KF E+ ++ T F R + +PP PV K HP ++L +
Sbjct: 187 KLIEYLKYTSIVNPHA----KFRVEIEDEAFT--FERVSSEVPPCPVAIKPHPYGIELGV 240
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQL 387
+K + A S L +FL F +G+ + + P + V +L + + R+
Sbjct: 241 LKRMTA-ASDLPLKEFLVESFSKVGEKTSLEICSSA--RLDPVVKVSTLDLESLNRLLDA 297
Query: 388 FRQAKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
+ K PS CLSP + + G+ KE D + + V+ GH FIVEA + G
Sbjct: 298 MQTTKIPAPSASQCLSPITDELIVKGMEKEFELDFIKARTRPGNVYGGHSFIVEAAIGYG 357
Query: 447 GKDVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VFVSI 502
GK +G I RFANR+PLL++QG +T A++ +NW +Y ++Q+ G + V +
Sbjct: 358 GKLPPEGNAILLRFANRVPLLYQQGACAIT-NAVQNVNWKAYGVSQSGLPTGPILILVHV 416
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+T +PF G K+ I EI + A+Q+ LK + R+ +++ Q +R R +
Sbjct: 417 AATSVPFTGESKDAIA-AIPEIEREITLALQELGRDLKMFLSRRDRNKLQDDRARAI 472
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 19 NESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
+E A KQ+S AEFF +NK + GFD+P + + TT++E ++NSLD+ E LP + +++
Sbjct: 5 DELAKKQRSISVAEFFEKNKQMLGFDSPTRGIITTIKEAIDNSLDACEEAQVLPDILVSV 64
Query: 77 EEIGKSKFNSMI 88
+ F ++
Sbjct: 65 RRVSNDVFRVVV 76
>gi|294495183|ref|YP_003541676.1| DNA topoisomerase VI subunit beta [Methanohalophilus mahii DSM
5219]
gi|292666182|gb|ADE36031.1| DNA topoisomerase VI, B subunit [Methanohalophilus mahii DSM 5219]
Length = 617
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 203/390 (52%), Gaps = 18/390 (4%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ D IP +F ++L G+++ LKQ+RG+ G+G A+++S+++ G I
Sbjct: 76 VIIEDNGPGIVKDQIPRVFAKLLYGSRFHALKQSRGQQGIGISAAVLYSQLTAGHATRII 135
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKILH 271
S + + + +L I+ N P + L ++ DR HG +++ +E + R +
Sbjct: 136 SKIGPQSPAHYYELMINTRSNDPEI-LKDEIAEWDRPHGTRVEMEMEATYVKGRRQSVEE 194
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++ A++ P+A+ K + ++ + F R TD +P E HP ++L + +
Sbjct: 195 YLKATAIVNPHARI--KLIDPEGDERI---FDRATDKIPEPASEILPHPHGIELGTLMKM 249
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391
+ T++ L FL++ F IG AE + G + M +++ + R+ F++
Sbjct: 250 LRYTARQRLAPFLRYSFSKIGLLTAEEICSASGLDVD--MDPQTIEREDAKRLLDAFQKV 307
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVK 451
K P CLSP GE + G+ KE D +AT + + V+ G+PF+VE G++ GG K
Sbjct: 308 KIMSPPTDCLSPIGEELIYKGLEKEFKVDFIATTTRTPSVYSGNPFVVEVGIAYGGNLQK 367
Query: 452 QG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSIVST 505
+NI RFANR+PLL++QGG VT ++ I W Y INQ + + + + ST
Sbjct: 368 DDRVNIMRFANRVPLLYQQGG-CVTTHGVEGIKWKQYGINQPGGGLPIGPLVLLIHVAST 426
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQC 535
+PF K+ I D EI V+ A+++
Sbjct: 427 NVPFTSESKDAIA-DIPEIQDEVELALKEV 455
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQ+S AEFF +N+ I GFD+ +SL TT++E V+NSLD+ E LP + + I+
Sbjct: 8 ELAKKQQSISVAEFFEKNRQILGFDSAPRSLITTIKEAVDNSLDACEESGILPDIMLHIK 67
Query: 78 EIGKS 82
GKS
Sbjct: 68 RSGKS 72
>gi|197123331|ref|YP_002135282.1| DNA topoisomerase VI subunit B [Anaeromyxobacter sp. K]
gi|196173180|gb|ACG74153.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter sp. K]
Length = 689
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 161/615 (26%), Positives = 273/615 (44%), Gaps = 137/615 (22%)
Query: 13 KSPK---TPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESIS 67
+SPK T + A +Q+ S +EFF +N+++ GFDN K+L TT++E V+NSLD+ E
Sbjct: 75 RSPKRRATAEQMAQQQREISISEFFTKNRHLLGFDNASKALLTTIKEAVDNSLDACEEAG 134
Query: 68 ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKN 127
LP + I + ++G L D E E
Sbjct: 135 ILPEITIEVRDLG-------------------LDDKGEGE-------------------- 155
Query: 128 AALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQT 186
TKG +GR + V +DNG G+ P +FG++L G+K+ LKQ+
Sbjct: 156 -----------LTKG-EGR-----FVVVVEDNGPGIVKAQAPKIFGKLLYGSKFHRLKQS 198
Query: 187 RGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK 246
RG+ G+G A ++ +++TG PI + S ++ ID +N P V +
Sbjct: 199 RGQQGIGISAAAMYGQLTTGQPIRMISRTGKGKPAFGLEIQIDTRKNNPVVTAERQ---L 255
Query: 247 DRW--HGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSR 304
D W HG +++ I NW + + Y+ A+ P+A F + + + + F R
Sbjct: 256 DDWHEHGTRVELEIVANWQQGQRFVNRYVEHTALSNPHAAFHY-----LRPRQPPLSFPR 310
Query: 305 RTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG 364
TD +P E K HP V+L + + A++ + FLQ F + ++A+ ++ + G
Sbjct: 311 ATDELPKEAQEIKPHPHGVELGALMRMAADSKSHDVRGFLQAAFSRVSSTVADEIVKKAG 370
Query: 365 PEFSPKMAVKSLTSQQIV--RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELH---- 418
F ++ + + + + V R+HQ K P LSP G+ +R G++ L+
Sbjct: 371 --FKARVRPRDVAADREVARRLHQAIGATKIMAPPTQILSPIGDTLMRKGLVSFLNVIET 428
Query: 419 ---------------------------------PD---------------MVATYSGSAQ 430
PD +AT + +
Sbjct: 429 EGPEEEEQLDLDAARKKKATKKGKAAKAEAPEVPDAPPEEGVEKIKGHNYFIATVTRPPK 488
Query: 431 VFEGHPFIVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKI 489
V+ G+PF VE G++ GG + + +FRFANR+PLLF++G +T A+ + +W +Y +
Sbjct: 489 VYRGNPFQVEVGLAYGGSWPADKPIELFRFANRVPLLFQRGACGMTE-AIVKTDWRNYLL 547
Query: 490 NQTQDKIGV-----FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV 544
+Q + + V V I S +PF KE + EI ++ A Q+C +L + I
Sbjct: 548 SQPRGSLPVGPMALLVHIASVWVPFTSEAKEAVA-HYPEITREIQLAAQECGRKLAAHI- 605
Query: 545 RKIQDREQQERKRNL 559
RK + + Q ++R+L
Sbjct: 606 RKRKHADYQAQRRSL 620
>gi|282162711|ref|YP_003355096.1| type II DNA topoisomerase VI subunit B [Methanocella paludicola
SANAE]
gi|282155025|dbj|BAI60113.1| type II DNA topoisomerase VI subunit B [Methanocella paludicola
SANAE]
Length = 547
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 208/416 (50%), Gaps = 21/416 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL-KQTRGKFGLGAKMALIWSKMS 204
+G YR+T +DNG G+ +IP +FG++L G+K+G+ KQ+RG+ G+G ++ S++
Sbjct: 73 KGRLKRYRLTVRDNGPGIMPKNIPPVFGKLLYGSKFGVRKQSRGQQGIGVSAVVLISQIK 132
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
TG + SS N + +L +D+++N +H + +E D W G E+ VV+E ++
Sbjct: 133 TGEHAVVRSSTDGRNTHVY-ELTVDVNKNAAKIH-NACKEKSDGWRGVEVSVVLEAMFS- 189
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVD 324
S+I+ Y+ A I P+ + V E +V RRTDV+P PVETK HP D
Sbjct: 190 --SRIMEYLELTAAINPHMALHYDGVDEKDRLDV----ERRTDVLPRQPVETKPHPLGAD 243
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRI 384
L+ + A T L FL+ EF + + ++ L+ +++ +
Sbjct: 244 YDLLSKMAARTKHRRLYDFLKGEFDRMRPDIVRNIVRSCKDTVDVDRPPAELSRKELSGL 303
Query: 385 HQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS 444
+ R + PS CLSP GE L G++ L P +A + G PF+VE ++
Sbjct: 304 VEAMRGVETLPPSPECLSPVGEDILIKGVVDRLRPKFIAAVTRKPSAMRGQPFLVEIIMA 363
Query: 445 VGGK-------DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
G + D G+++ RF NR+PLLF + DV+ + A++ Y++ + +
Sbjct: 364 YGCEADFGGSPDPITGVSVHRFVNRVPLLFSESSDVILK-AVREAGLGRYEV-VPESRSH 421
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
VFV + IP+ KE + E ++ A+Q C ++ SK +R+++ E+
Sbjct: 422 VFVHVAGVNIPYTSESKEAV-KAVDEYYEEIRLAVQDCGRKI-SKHIRQVKRTEEN 475
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 16 KTPNESA--LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVE 73
KT E A +K+ S +EF A N ++ GF++ K + ++ E++ NSLD+ ES LP V
Sbjct: 5 KTARELAKDMKEISFSEFIATNPHLVGFESSLKMIPMSIHEILTNSLDACESAGILPEVW 64
Query: 74 ITIEEI 79
I ++ I
Sbjct: 65 IDLKSI 70
>gi|424814407|ref|ZP_18239585.1| DNA topoisomerase VI, B subunit [Candidatus Nanosalina sp. J07AB43]
gi|339758023|gb|EGQ43280.1| DNA topoisomerase VI, B subunit [Candidatus Nanosalina sp. J07AB43]
Length = 530
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 222/427 (51%), Gaps = 32/427 (7%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DN G+ ++IP +FG++L G+K+ L+Q+RG+ G+G + ++++++TG P+ +
Sbjct: 78 RVEIRDNAIGLSRENIPKVFGKLLYGSKFHKLQQSRGQQGIGISASAMYAQLTTGEPVTV 137
Query: 212 SSSMR---SHNFISFCKLDIDIHRNIPHVHLHEKRE--------NKDRW--HGAEIQVVI 258
S H F+ + I+ +N P + E E +KD + HG I++ +
Sbjct: 138 YSKQEGEPCHKFV----VRINTEKNEPEILEDEVIEPESDEFPGDKDYYFDHGTTIEMDV 193
Query: 259 EGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH 318
E +T + +Y++ A++ PYA+ + + I + R + +P P E K
Sbjct: 194 EAKYTRGHHSVRNYLKHTAIMNPYARVVLR-----EPDGNKIEYPRVSKELPERPKEIKP 248
Query: 319 HPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
HP V L ++ +I + T+ FLQ+EF +G++ AE++ E + +L
Sbjct: 249 HPHGVQLGVMLRMIDNSDARTVSSFLQNEFTRVGRTSAEKICEEA--DIDDGRRPNTLDK 306
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
+ +I ++ P CLSP GE + G+ KEL+P+ + V++G+PF
Sbjct: 307 DESEQILDAAQEVNLQSPPTDCLSPLGEDLMLKGLEKELNPEYSTAVTRKPTVYQGNPFQ 366
Query: 439 VEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT----Q 493
VE G++ GG +G N R+AN++PLL+++ V T+ A++ ++W+ Y I+QT Q
Sbjct: 367 VEVGLAWGGDIKDEGSFNELRYANKVPLLYKKSACVTTK-AIEDVSWNRYNISQTGSRPQ 425
Query: 494 DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
+ + + I S +PF GKE + + I +K A+Q+ +L + RK + Q+
Sbjct: 426 GPLYISIHIASVWVPFTSEGKEAVA-NYDPIRKEMKLALQEAGRKLGKYLKRKERKEVQE 484
Query: 554 ERKRNLS 560
+++R L+
Sbjct: 485 KKRRQLT 491
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
S AEFF +NK++ GF+NP KS+ T V+E V+NSLD+ E LP +++ I++IG K
Sbjct: 20 SVAEFFEKNKHLLGFENPQKSIITVVKEAVDNSLDACEEEDILPEIQVLIDDIGDQK 76
>gi|73670272|ref|YP_306287.1| DNA topoisomerase VI subunit B [Methanosarcina barkeri str. Fusaro]
gi|121729410|sp|Q468I5.1|TOP6B_METBF RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|72397434|gb|AAZ71707.1| DNA topoisomerase subunit B [Methanosarcina barkeri str. Fusaro]
Length = 621
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 216/419 (51%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+
Sbjct: 68 RTGQDYVTVIIEDNGPGIIKEQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 127
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
G +I S S N + +L I+ N P + L ++ + R HG +I++ ++ +
Sbjct: 128 AGKQTKILSKTGSGNPAHYYELMINTSTNEPDI-LKDEIRDWFRPHGTQIELEMKAAYVK 186
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R I Y++ A++ P+A+ + + V F R TD MP E HP +
Sbjct: 187 GRRQSISEYLKATAIVNPHARI--TLIEPDGNEEV---FERATDKMPKPAEEILPHPEGI 241
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T + L FL++ F IG AE + G P++ +L + +
Sbjct: 242 ELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKASG--LDPEIDPHALGRHEARK 299
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ + F + K P CLSP GE + G+ KE + D +AT + V+ G+PF+VE G+
Sbjct: 300 LIEAFEKVKIMSPPTDCLSPIGEELIYRGLEKETNVDFIATSTRKPAVYSGNPFVVEVGL 359
Query: 444 SVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GGK K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ + V
Sbjct: 360 AYGGKLPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIKWKQYGLNQPGGGVPVGPAI 418
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ + S +PF K+ I D I + AI+ +LK + ++ ++++E++
Sbjct: 419 LLIHVASINVPFTSESKDAIA-DIPVIKDEIDLAIKDVARKLKHYLSKQSNLKKRREKE 476
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +N+ I GFD+ +SL TTV+E V+N+LD+ E LP + + IE G+
Sbjct: 14 KSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQIERTGQDY 73
Query: 84 FNSMI 88
+I
Sbjct: 74 VTVII 78
>gi|336476699|ref|YP_004615840.1| DNA topoisomerase VI subunit B [Methanosalsum zhilinae DSM 4017]
gi|335930080|gb|AEH60621.1| DNA topoisomerase VI, B subunit [Methanosalsum zhilinae DSM 4017]
Length = 621
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 217/412 (52%), Gaps = 20/412 (4%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G +++++++++G P +I
Sbjct: 75 RVIIEDNGPGIVREQIPKVFAKLLYGSRFHSLKQSRGQQGIGISASVLYAQLTSGQPTKI 134
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKIL 270
S + S + + +L I+ N P + + E DR G I++ + ++ R +
Sbjct: 135 ISKIGSDSPAHYYELMINTGTNDPEIFRDDIIE-WDRSQGTRIELEMAASYVKGRRQSVY 193
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++ A++ P+A+ V + + F R TD +P E HP ++L +
Sbjct: 194 EYLKATAIVNPHARI--TLVEPDGNEEI---FERVTDKLPATAKEILPHPHGIELGTLMR 248
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
++ T + L FL++ F IG AE + G +F +++ Q +I F+
Sbjct: 249 MLRYTDRQKLGAFLRYSFSKIGHLTAEEICKASGLDFD--QDPHNISRDQAKKILDAFKT 306
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV 450
K P CLSP GE + G+ KEL D++AT + + V+ G+PF++E G++ GGK
Sbjct: 307 VKIMSPPTDCLSPIGENLIYKGLQKELDVDLIATTTRAPSVYSGNPFVIEVGIAYGGKLQ 366
Query: 451 KQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSIVS 504
K + I RFANR+PLL++QG V TR A++ I W Y ++Q + V V + S
Sbjct: 367 KDDRIEITRFANRVPLLYQQGACVTTR-AIESIKWKQYGLSQPGGGLPVGPVVLLVHVAS 425
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK--IQDREQQE 554
T +PF K+ + + EI + V+ A+++ +L + ++ ++ R Q+E
Sbjct: 426 TNVPFTSESKDAVA-EIPEIQNEVELALKEVARKLNRFLKKQGSLKKRRQKE 476
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+ I GFD+ +SL TT++E V+NSLD+ E LP + + +E
Sbjct: 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTIKEAVDNSLDACEEAELLPNIMVQVE 67
Query: 78 EIGKSKFNSMI 88
GK +I
Sbjct: 68 RAGKDNLRVII 78
>gi|86159262|ref|YP_466047.1| DNA topoisomerase VI subunit B [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775773|gb|ABC82610.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
2CP-C]
Length = 604
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 158/599 (26%), Positives = 264/599 (44%), Gaps = 132/599 (22%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S +EFF +N+++ GFDN K+L TT++E V+NSLD+ E LP EITI
Sbjct: 6 REISISEFFTKNRHLLGFDNASKALLTTIKEAVDNSLDACEEAGILP--EITI------- 56
Query: 84 FNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGA 143
E D L D E E TKG
Sbjct: 57 ----------EVRDLGLNDQGEGE-------------------------------LTKG- 74
Query: 144 KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSK 202
+GR + V +DNG G+ P +FG++L G+K+ LKQ+RG+ G+G A ++ +
Sbjct: 75 EGR-----FVVVVEDNGPGIVKAQAPKIFGKLLYGSKFHRLKQSRGQQGIGISAAAMYGQ 129
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWH--GAEIQVVIEG 260
++TG PI + S ++ ID +N P V + D WH G +++ I
Sbjct: 130 LTTGQPIRMISRTGKGKPAFGLEIQIDTRKNNPVVTAERQL---DDWHEHGTRVELEIVA 186
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
NW + + Y+ A+ P+A F + + + + F R TD +P E K HP
Sbjct: 187 NWQQGQRFVNRYVEHTALSNPHATFHY-----LRPRQAPLSFPRATDELPKEAQEIKPHP 241
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
V+L + + A++ + FLQ F + ++A+ ++ + G F K+ + + +
Sbjct: 242 HGVELGALMRMAADSKSHDVRGFLQSAFSRVSSTVADEIVKKAG--FKAKVRPRDVAGDR 299
Query: 381 IV--RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELH-------------------- 418
V ++HQ + P LSP G+ +R G++ L+
Sbjct: 300 EVARKLHQAIGATRIMAPPTQILSPIGDTLMRKGLVSFLNVIETEGPEEEEQLDLDAARK 359
Query: 419 -----------------PD---------------MVATYSGSAQVFEGHPFIVEAGVSVG 446
PD +AT + +V+ G+PF VE G++ G
Sbjct: 360 KKATKKGRAAKAEAPEVPDAPAEEGVEKIKGHNYFIATVTRPPKVYRGNPFQVEVGLAYG 419
Query: 447 GK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FV 500
G + + +FRFANR+PLLF++G +T A+ + +W +Y ++Q + + V V
Sbjct: 420 GSWPADKPIELFRFANRVPLLFQRGACGMTE-AIVKTDWRNYLLSQPRGSLPVGPMALLV 478
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
I S +PF KE + EI ++ A Q+C +L + I RK + + Q ++R+L
Sbjct: 479 HIASVWVPFTSEAKEAVA-HYPEITREIQLAAQECGRKLAAHI-RKRKHADYQAQRRSL 535
>gi|282163830|ref|YP_003356215.1| type II DNA topoisomerase VI subunit B [Methanocella paludicola
SANAE]
gi|282156144|dbj|BAI61232.1| type II DNA topoisomerase VI subunit B [Methanocella paludicola
SANAE]
Length = 555
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 199/391 (50%), Gaps = 22/391 (5%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ D +P +FG++L G+++ ++Q+RG+ G+G A++++++++G P+ I+
Sbjct: 96 VVIEDNGPGVQKDVLPRVFGKLLYGSRFHAIRQSRGQQGIGISAAVLYAQLTSGKPVRIT 155
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHY 272
S + +L ID N P + L E ++ G I++ +E + R ++ Y
Sbjct: 156 SRIDPKLPAYVYELKIDTQTNEPKL-LSENYDDFFTSRGTRIELNMEATYVRGRQSVMEY 214
Query: 273 MRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLI 332
++ A++ P+A+ F V + + F R DV+P P+E K HP ++L + ++
Sbjct: 215 LKNTAIVNPHARITF-----VDPYDERVIFERACDVLPKQPIEIKPHPHGIELGTLIKML 269
Query: 333 AETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ--QIVRIHQLFRQ 390
T L FL F IG + + E P MA + L + R+ F++
Sbjct: 270 QSTDNLKLSSFLSLSFAKIGGHTMDSICKEAN--LDPAMAPQDLAQDIDGVKRLMAAFQK 327
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-D 449
K P CLSP L+ G+ + D ++T S V G+PF+VEA ++ GG D
Sbjct: 328 IKIQAPPKDCLSPITGDLLKKGLTQNHRVDFISTVSRPVNVSRGNPFLVEAAIAYGGDID 387
Query: 450 VKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIV 503
+ I+R ANR+PL+++QG +T A++RINW +Y + Q Q I + V +
Sbjct: 388 TEGRAEIYRIANRVPLMYQQGACAITH-AIERINWKNYNMEQPKGAKMPQGPIMIMVHVA 446
Query: 504 STKIPFKGTGKEYIGDDTK---EIASAVKSA 531
ST +PF K+ I D + EI AV+ A
Sbjct: 447 STNVPFTSESKDAIADIPELEDEIELAVREA 477
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 9 KRKSKSPKTPN----ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDS 62
K ++K PK + E A KQK S AEFF +N+++ GFD+ + L T V+E V+N+LD+
Sbjct: 13 KVEAKLPKADSPIAVELAKKQKAISVAEFFEKNRHMLGFDSLPRCLITCVKEAVDNALDA 72
Query: 63 AESISELPVVEITIEEIGKSKFNSMI 88
E LP + I + ++ + N +I
Sbjct: 73 CEESQILPDIYIRVRKVDERILNVVI 98
>gi|307354509|ref|YP_003895560.1| DNA topoisomerase VI subunit B [Methanoplanus petrolearius DSM
11571]
gi|307157742|gb|ADN37122.1| DNA topoisomerase VI, B subunit [Methanoplanus petrolearius DSM
11571]
Length = 600
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 215/414 (51%), Gaps = 23/414 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YR+ +DNG G+ +P +FG++L G+++ +KQ+RG+ G+G A+++++++TG+P
Sbjct: 72 YRIIVEDNGPGIVPKQVPFVFGKLLYGSRFHQIKQSRGQQGIGISAAVLYAQLTTGVPAV 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ S N ++ I N P V L ++ DR HG I++ + + ++L
Sbjct: 132 VISRTSYKNKAHRFEIMIRTEANEPEV-LKDEEIEWDRMHGTRIEIEFKTTLAA-KKRLL 189
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTD--VMPPVPVETKHHPSSVDLLLI 328
Y+ +V+ P+A+ EV F R + ++PP + HP ++L +
Sbjct: 190 DYLMYTSVVNPHARIKADIDGEV------YNFERVNEETIVPPKAILP--HPHGLELGQL 241
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
K IA S L FL + F +G AE +IG G + S K K+LT++++ ++ +
Sbjct: 242 K-RIAAASDINLKDFLINSFSRVGDKNAEEIIGGSGLKESRK--AKTLTNEELKKLLESM 298
Query: 389 RQAKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
+ + P CLSP GE + GI KE D V + ++VF GHPFIVEA + GG
Sbjct: 299 QNVEVPPPPASQCLSPIGEDMIIRGIDKEFQLDFVRARTRKSKVFSGHPFIVEAAIGYGG 358
Query: 448 KDVKQGL-NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VFVSIV 503
K +G I RFANR+PLL++QG +T ++ INW +Y I+Q G + V +
Sbjct: 359 KLESEGTATILRFANRVPLLYQQGACAIT-NSIAGINWKAYNISQQGLPTGPVLILVHVA 417
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
ST +PF K+ + EI + A+Q LK + R+ ++++ +ER R
Sbjct: 418 STNVPFTSESKDAVA-SIPEIEKEIVLALQDLGRDLKMFLGRRDRNKQFEERAR 470
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +NK++ GFD+P + + TT++E V+NSLD+ E LP + + ++++ K
Sbjct: 12 KSISVAEFFEKNKHLLGFDSPTRGIITTIKEAVDNSLDACEEAEVLPDIFVGVKKVDKDV 71
Query: 84 FNSMI 88
+ ++
Sbjct: 72 YRIIV 76
>gi|21228519|ref|NP_634441.1| DNA topoisomerase VI subunit B [Methanosarcina mazei Go1]
gi|23822274|sp|Q8PUB8.1|TOP6B_METMA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|152149435|pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
gi|20907005|gb|AAM32113.1| Type II DNA topoisomerase VI, subunit B [Methanosarcina mazei Go1]
Length = 621
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 212/419 (50%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+
Sbjct: 68 RTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 127
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
G +I S + +L I+ N P + + E R + R HG +I++ + +
Sbjct: 128 AGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR-DWFRPHGTQIELEMRAAYVK 186
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R I Y++ A++ P+A+ + + V F R TD MP E HP +
Sbjct: 187 GRRQSIYEYLKATAIVNPHARI--TLIDPDGNEEV---FERATDKMPEPAEEILPHPEGI 241
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T + L FL++ F IG AE + G P++ +L + +
Sbjct: 242 ELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAG--LDPEIDPHALGRHEARK 299
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ + F + K P CLSP GE + G+ KE D +AT + V+ G+PF+VE G+
Sbjct: 300 LIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGM 359
Query: 444 SVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GG K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ I V
Sbjct: 360 AYGGNLPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIKWKQYGLNQPGGGIPVGPVI 418
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ + S +PF K+ I D I + AI++ +LK + ++ ++++E++
Sbjct: 419 LLIHVASINVPFTSESKDAIA-DIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKE 476
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+ I GFD+ +SL TTV+E V+N+LD+ E LP + + +E
Sbjct: 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVE 67
Query: 78 EIGKSKFNSMI 88
G +I
Sbjct: 68 RTGPDYVTVII 78
>gi|20090445|ref|NP_616520.1| DNA topoisomerase VI subunit B [Methanosarcina acetivorans C2A]
gi|23822278|sp|Q8TQF7.1|TOP6B_METAC RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|19915460|gb|AAM05000.1| DNA topoisomerase subunit B [Methanosarcina acetivorans C2A]
Length = 621
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 216/414 (52%), Gaps = 18/414 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+ V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+ G
Sbjct: 73 YVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHT 132
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSK 268
+I S S+ + +L I+ N P + + E R + R HG +I++ ++ + R
Sbjct: 133 KILSKTGSNVPAHYYELMINTSTNEPDILMDEVR-DWFRPHGTQIELEMKAAYVKGRRQS 191
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
I Y++ A++ P+A+ + + V F R TD +P E HP ++L +
Sbjct: 192 IYEYLKATAIVNPHARI--TLIDPDGNEEV---FERATDKIPDPAEEILPHPEGIELGTL 246
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T + L FL++ F IG A+ + G P++ +L + ++ + F
Sbjct: 247 MKMLHYTERQKLAPFLRYSFCKIGLLTADEICKAAG--LDPEIDPHALGRHEARKLIEAF 304
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
++ K P CLSP GE + G+ KE + D +AT + V+ G+PF+VE G++ GG
Sbjct: 305 QKVKIMSPPTDCLSPIGEELIYRGLEKETNVDFIATSTRKPAVYSGNPFVVEVGLAYGGN 364
Query: 449 DVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSI 502
K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ + + + +
Sbjct: 365 LPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIRWKQYGLNQPGGGVPIGPVLLLIHV 423
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
S +PF K+ I D I V A+++ +LK + ++ ++++E++
Sbjct: 424 ASINVPFTSESKDAIA-DIPVIKEEVDLAVKEVARKLKHYLSKQSNLKKRREKE 476
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+ I GFD+ +SL TTV+E V+NSLD+ E LP + + +E
Sbjct: 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNSLDACEEAGILPDILVQVE 67
Query: 78 EIGKSKFNSMI 88
G+ +I
Sbjct: 68 RTGQDYVTVII 78
>gi|452210941|ref|YP_007491055.1| DNA topoisomerase VI subunit B [Methanosarcina mazei Tuc01]
gi|452100843|gb|AGF97783.1| DNA topoisomerase VI subunit B [Methanosarcina mazei Tuc01]
Length = 611
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 212/419 (50%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+
Sbjct: 58 RTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 117
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
G +I S + +L I+ N P + + E R + R HG +I++ + +
Sbjct: 118 AGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR-DWFRPHGTQIELEMRAAYVK 176
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R I Y++ A++ P+A+ + + V F R TD MP E HP +
Sbjct: 177 GRRQSIYEYLKATAIVNPHARI--TLIDPDGNEEV---FERATDKMPEPAEEILPHPEGI 231
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T + L FL++ F IG AE + G P++ +L + +
Sbjct: 232 ELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAG--LDPEIDPHALGRHEARK 289
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ + F + K P CLSP GE + G+ KE D +AT + V+ G+PF+VE G+
Sbjct: 290 LIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGM 349
Query: 444 SVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GG K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ I V
Sbjct: 350 AYGGNLPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIKWKQYGLNQPGGGIPVGPVI 408
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ + S +PF K+ I D I + AI++ +LK + ++ ++++E++
Sbjct: 409 LLIHVASINVPFTSESKDAIA-DIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKE 466
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +N+ I GFD+ +SL TTV+E V+N+LD+ E LP + + +E G
Sbjct: 4 KSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDY 63
Query: 84 FNSMI 88
+I
Sbjct: 64 VTVII 68
>gi|219852784|ref|YP_002467216.1| DNA topoisomerase VI subunit B [Methanosphaerula palustris E1-9c]
gi|219547043|gb|ACL17493.1| DNA topoisomerase VI, B subunit [Methanosphaerula palustris E1-9c]
Length = 600
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 209/426 (49%), Gaps = 29/426 (6%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + + +DNG G+ + +P +FG++L G+++ ++Q+RG+ G+G A+++++++
Sbjct: 66 RKTGDLFWIMVEDNGPGIMPEQVPFVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLT 125
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
+G P +++ ++ I + N P V L K DR HG +++ +
Sbjct: 126 SGTPAVVTTRTGPATPAVRMEIQIKVATNEPKV-LSNKEVPWDRTHGTRVEIEFTSTLSA 184
Query: 265 YRSKILHYMRQMAVITPYAQFLFK-----FVSEVAEKNVTIRFSRRTDVMPPVPVETKHH 319
+ +++ Y+R V+ P+A+ + F SE V + P K H
Sbjct: 185 -KKRLIEYLRYTGVVNPHARIRAEIDGEPFTSERVSNEVLV-----------CPKAIKPH 232
Query: 320 PSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
P ++L ++K + AE LL+FL EF +GK AE + P VK L +
Sbjct: 233 PYGIELGMLKRM-AEGETRPLLEFLTSEFSRVGKKTAEEICSIAS--LRPAAQVKRLNAD 289
Query: 380 QIVRIHQLFRQAKFD-DPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
Q + +Q K P+ CLSP GE + G+ E D V + + VF GHPF+
Sbjct: 290 QQRSLLAAMQQVKVPAPPTSQCLSPIGEELMVRGLEAEFRMDFVKARTRPSSVFSGHPFM 349
Query: 439 VEAGVSVGGKDVKQGL-NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
VEA + GGK +G I RFANR+PL+++QG +T++ + +NW +Y I Q +G
Sbjct: 350 VEAALGYGGKLPPEGNGQIMRFANRVPLIYQQGACAITQS-VAGVNWKAYGIGQQGLPMG 408
Query: 498 ---VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQE 554
+ V + ST +PF K+ I EI + A+Q LK+ I R+ + + Q++
Sbjct: 409 PVLILVHVASTNVPFTSESKDAIA-SIPEIEKEIVLALQDLGRDLKAFISRRDRTKLQED 467
Query: 555 RKRNLS 560
R R +
Sbjct: 468 RARAIC 473
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S+ + S AEFF +NK++ GFD+P + + TT++E V+N+LD+ E LP + I ++
Sbjct: 9 SSQRSISIAEFFEKNKHLLGFDSPTRGIITTIKEAVDNALDACEEAEVLPDIYIEVKRKT 68
Query: 81 KSKFNSMI 88
F M+
Sbjct: 69 GDLFWIMV 76
>gi|323139267|ref|ZP_08074321.1| DNA topoisomerase VI, B subunit [Methylocystis sp. ATCC 49242]
gi|322395488|gb|EFX98035.1| DNA topoisomerase VI, B subunit [Methylocystis sp. ATCC 49242]
Length = 543
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/457 (25%), Positives = 211/457 (46%), Gaps = 49/457 (10%)
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAK 195
P T +GR E S R+ +DNG G+ I +FG++L G+K+ L Q+RG+ G+G
Sbjct: 52 PDITVEVRGRFEKS--RIVVEDNGPGIVESQIARIFGKLLYGSKFHKLAQSRGQQGMGIS 109
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
A ++ +++ G P+ + S S + ID N P +H +KR D HG ++
Sbjct: 110 AAGMYGQLTVGKPLHVISRTEGDALASELYVSIDTANNRPDIH-RKKRIEWDSPHGTRVE 168
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
+ IEG + Y++Q A+ P+ ++ + + F+R ++ +PP P E
Sbjct: 169 MEIEGVDQAGPHSVEVYLKQTAIANPHVSIAYR-----GPRGRELVFARSSETLPPRPKE 223
Query: 316 TKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKS 375
+ HPS ++L + ++ T +LL+FL EF +G A +I G S +
Sbjct: 224 IRPHPSGMELGRLIQMLNVTKSRSLLRFLVDEFSCVGAKTALEIISRAGKPLSDRSYPAH 283
Query: 376 LTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 435
+ Q +H+ ++ + P C+ P GE L G+ KEL D + + G+
Sbjct: 284 IAHAQASALHRALQKTRVRAPRTDCIVPIGEARLLEGLRKELPADFYTVATRPPATYRGN 343
Query: 436 PFIVEAGVS-------------------------------VGGKDVKQGLNIFRFANRIP 464
PF VE G++ + KD + + + RFANR+P
Sbjct: 344 PFQVEVGIAFARPGESEIEVDALGHMRRKKQERPDATRHLIARKD--EPVRLLRFANRVP 401
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKINQTQDKI-----GVFVSIVSTKIPFKGTGKEYIGD 519
LL++Q +T++ ++ NW +Y ++Q++ + + V + S +P+ KE I +
Sbjct: 402 LLYQQASCAITKSVLQ-TNWRAYGLHQSRGALPIAPMAIVVHVASVWVPYTSEAKEAI-E 459
Query: 520 DTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
E+ +K +QQC +L + R+ + + ER+
Sbjct: 460 PYPELVREIKLGLQQCARRLSHYLQRESSLQHEYERR 496
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
++ S +EFF +N+++ GFD P K+L T V+E V+N+LD+ E LP +IT+E G+
Sbjct: 6 REISVSEFFLKNRHLLGFDTPAKALVTAVKEAVDNALDACEEAGVLP--DITVEVRGR 61
>gi|374630621|ref|ZP_09703006.1| DNA topoisomerase VI, B subunit [Methanoplanus limicola DSM 2279]
gi|373908734|gb|EHQ36838.1| DNA topoisomerase VI, B subunit [Methanoplanus limicola DSM 2279]
Length = 600
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 219/418 (52%), Gaps = 31/418 (7%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+R+ +DNG G+ +P +FG++L G+++ ++Q+RG+ G+G A+++++++TG+P
Sbjct: 72 FRIIVEDNGPGITPAQVPFVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTTGIPAV 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
++S + +L I N P + + ++ DR HG I++ + + + ++L
Sbjct: 132 VTSRTGHKSPAHRFELLIKTETNEPEI-VKQEEIVWDRMHGTRIEIEFKSSLAA-KKRLL 189
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+R +V+ P+A+ ++ F R +D + P HP ++L L+K
Sbjct: 190 DYLRYTSVVNPHARIRADIDGDLH------NFERASDEIIVAPKAIAPHPHGIELGLLKR 243
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMA------VKSLTS-QQIVR 383
+ A + K L +FL F +G+ A+ +IG G + S K + +KSL S Q V
Sbjct: 244 MAALSDK-KLKEFLIDGFSRVGEKNADEIIGISGLKNSRKTSGLKIEELKSLLSAMQTVS 302
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ P+ CLSP GE + GI KE D V + + +QV+ G+PFI+EA +
Sbjct: 303 VPP--------PPASQCLSPIGEEMIIKGIDKEFELDFVKSRTRKSQVYSGNPFIIEAAI 354
Query: 444 SVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VF 499
GGK +G + RFANR+PLL++QG +T A+ ++NW SY + Q G +
Sbjct: 355 GYGGKLESEGSATLMRFANRVPLLYQQGACAIT-NAVSQVNWKSYNLPQQGIPTGPVMIL 413
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
V + ST +PF K+ + EI + +Q +LK+ + R+ ++++++ER R
Sbjct: 414 VHVASTNVPFTSESKDAVA-AIDEIEKEIVLVMQDLGRELKNFLSRRDKNKQEEERAR 470
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQ+S AEFF +NK++ GFD+P + + TT++E V+NSLD+ E LP + + ++
Sbjct: 6 ELASKQRSISVAEFFEKNKHLLGFDSPTRGIITTIKEAVDNSLDACEEAEILPDIYVAVK 65
Query: 78 EIGKSKFNSMI 88
+ + F ++
Sbjct: 66 KTDRDVFRIIV 76
>gi|355570753|ref|ZP_09042023.1| DNA topoisomerase VI, B subunit [Methanolinea tarda NOBI-1]
gi|354826035|gb|EHF10251.1| DNA topoisomerase VI, B subunit [Methanolinea tarda NOBI-1]
Length = 601
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 206/415 (49%), Gaps = 19/415 (4%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+R++ +DNG G+ + +P +FG++L G+++ ++Q+RG+ G+G A+++++++TGLP
Sbjct: 72 FRISVEDNGPGIVPEQVPFVFGKLLYGSRFHQIRQSRGQQGIGISAAVLYAQLTTGLPTL 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ S + IDI N P V + +++ + DR HG +QV + K+L
Sbjct: 132 VISRTGPEEAAFRFLIQIDIQTNEP-VIIRKEKIDWDRTHGTLVQVEFRSTIAA-KKKLL 189
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y++ +++ P+A+ + E T F R +D P HP +++ +
Sbjct: 190 EYLKYTSIVNPHARITVEMEGE------TTLFERVSDEAIACPKTIMPHPHGIEIGQLMR 243
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+IA S+ +FL F +GK A + G SP V SL+ + ++ +
Sbjct: 244 MIA-GSRAACGEFLVTSFSRVGKKTAHEICRAAG--ISPDTPVSSLSPAEQKKLLSAMQN 300
Query: 391 AKFDDPSGG-CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKD 449
AK P+ CLSP GE + + KE D V + V+ GHPF+VEA + GGK
Sbjct: 301 AKVPAPTTQVCLSPIGEDLIVRSLEKEFQMDFVKARTRPGSVYSGHPFLVEAAIGYGGKL 360
Query: 450 VKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG---VFVSIVST 505
G I RFANR+PL+++QG +T + I W +Y + Q G + V + ST
Sbjct: 361 PADGNAIILRFANRVPLMYQQGACAIT-GCIAGITWKNYNVAQAGLPTGPLLIMVHVAST 419
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+PF K+ I EI V +Q+ +LK+ + R+ + R ++R R +
Sbjct: 420 NVPFTSESKDAIA-GIPEIEREVTLVLQELGRELKTYLSRRDKSRLAEDRARAVC 473
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 19 NESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
+E A +Q+S AEFF +NK++ GFD+P + + TT++E V+N+LD+ E LP + + +
Sbjct: 5 DELARQQRSISVAEFFEKNKHLLGFDSPTRGIITTIKEAVDNALDACEEAGVLPDIYVRV 64
Query: 77 EEIGKSKF 84
G F
Sbjct: 65 TRTGPDTF 72
>gi|424819556|ref|ZP_18244638.1| DNA topoisomerase VI subunit B [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422587|gb|EGD71981.1| DNA topoisomerase VI subunit B [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 620
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/541 (25%), Positives = 266/541 (49%), Gaps = 37/541 (6%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESI--------SELPVVEITIEE 78
S EFF +N+++ GFDN K+L T V+E V+NSLD+ E + ++ + EITI
Sbjct: 15 SVTEFFEKNRHLLGFDNKQKALLTCVKEAVDNSLDACEELGHIQEKRNEKVALPEITINV 74
Query: 79 IGKSKFNSMIGLVDRERVDTKLYDDYE-TEKARERRLAKEARAQELQAKNAALGKKVKEP 137
S +IG +++ + + E T + +K+ R L + V E
Sbjct: 75 KALSDNYQLIG--EKQSIGQMIVKKNEFTILYKGNSQSKQIRGGNLSMSFEDVTFNVSES 132
Query: 138 SATKGAKGRG-------EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGK 189
+ G A + ++ DNG G+ IP++FGR+L G+K+ ++Q+RG+
Sbjct: 133 NGKISVLMNGTQLRLKKNAPIFLISIMDNGPGIIESKIPDIFGRMLYGSKFQSMRQSRGQ 192
Query: 190 FGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW 249
G+G A+++S+++TG P I S ++S K+ I+I +N L EK E+
Sbjct: 193 QGIGIHSAVLYSQLTTGKPATIVSKVKSSKKAKMMKVQINILKNE-PEVLEEKEEDFPYE 251
Query: 250 HGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVM 309
G I + IEG + + + Y+R+ A++ P+A ++ ++ EK I + R + +
Sbjct: 252 SGTRIDLEIEGIYISSNKGLDEYVRRTALVNPHATIIY--INPNGEK---ITYKRVIERL 306
Query: 310 PPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSP 369
P PV K HP +++ + ++ +++ T++ L++E + +++A++++ +G P
Sbjct: 307 PKEPVSIKPHPEGLEMGIFMRILKNSTERTVIAVLENELSRVSRAVADQVLKSVG--IDP 364
Query: 370 KMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSA 429
K+ + + Q I + + P CLSP G L + KE P+ + + +
Sbjct: 365 KLKPQEIDRVQANSILKALQSLDLMRPQTDCLSPIGGEELEKSLKKEYSPEFIKSVTRKP 424
Query: 430 QVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKI 489
+V+ G PF +E + GG+ + RFAN+IPLLF+ +T++ + +++S Y +
Sbjct: 425 EVYRGMPFQIEVAAAYGGEIKSDKAMLMRFANKIPLLFDSSSCALTQSFLG-VDYSRYGL 483
Query: 490 NQTQDKIGV-----FVSIVSTKIPFKGTGKEYIGDD---TKEIASAVKSAIQQCCIQLKS 541
+ ++K+ V + I S +P+ K + TKEI A++ ++ + L
Sbjct: 484 -KVENKVPVGQLVFIIHIASVWVPYTNESKNSVASYPVITKEIKLALQELVRNLSVFLNR 542
Query: 542 K 542
K
Sbjct: 543 K 543
>gi|269986171|gb|EEZ92483.1| DNA topoisomerase VI, B subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 621
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/556 (25%), Positives = 266/556 (47%), Gaps = 45/556 (8%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISEL--------PVVEITIEE 78
S EFF +N+++ GFDN K+L T V+E V+NSLD+ E + + + EITI+
Sbjct: 15 SVTEFFEKNRHLLGFDNKQKALLTCVKEAVDNSLDACEELGHMQEKNKDKVTLPEITIDV 74
Query: 79 IGKSKFNSMIG-------LVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALG 131
S ++ L+ R+ T LY + + +K+ RA +L +
Sbjct: 75 KALSDNYQLLDEKQNIGQLIVRKNEFTVLY--------KGKSESKQIRAGKLTLSFEDVT 126
Query: 132 KKVKEPSAT-------KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GL 183
+ E + K + + A + + DNG G+ IP++FGR+L G+K+ +
Sbjct: 127 FDISENNDKLTVLMNGKQLRLKKNAPIFLIKIVDNGPGILPSKIPDIFGRMLYGSKFQSM 186
Query: 184 KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKR 243
+Q RG+ G+G A+++S+++TG P +I S ++S K+ I+I +N + E
Sbjct: 187 RQGRGQQGIGIHSAVLYSQLTTGKPAKIISKIKSGKKAKMMKVQINILKNE-PEVMEESE 245
Query: 244 ENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFS 303
E+ G I++ IEG + + + Y+R+ A++ P+A F++ ++ EK I +
Sbjct: 246 EDYPYESGTSIELEIEGLYISGNKGLDEYVRRTALVNPHANFIY--INPNGEK---ITYK 300
Query: 304 RRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
R D +P P+ K HP +++ + ++ +++ T+ L+ E + +++AE+ +
Sbjct: 301 RVVDALPKEPLSIKPHPEGLEIGIFMRILKNSTERTVSSVLEKELSRVSRAVAEQTLKSA 360
Query: 364 GPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVA 423
G K + + Q I + + P CLSP G L + KE P+ V
Sbjct: 361 G--IDTKTKPQEIDRVQANSILKALQSLDLMRPQTDCLSPIGGEELEKSLKKEYSPEFVK 418
Query: 424 TYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ + +V+ G PF +E + GG + RFAN+IPLLF+ +T++ + ++
Sbjct: 419 SVTRKPEVYRGMPFQIEVAAAYGGGIQNDKAVLMRFANKIPLLFDSASCALTQSFLG-VD 477
Query: 484 WSSYKIN-QTQDKIGVFVSIV---STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQL 539
++ Y + +++ IG V I+ S +P+ K + I +K A+Q+ L
Sbjct: 478 YARYGLKVESKVPIGPLVFIIHIASVWVPYTNESKNSVA-SYPVIVKEIKLALQELVRTL 536
Query: 540 KSKIVRKIQDREQQER 555
+ RK + QER
Sbjct: 537 SVFLNRKHKSSLFQER 552
>gi|14591346|ref|NP_143424.1| DNA topoisomerase VI subunit B [Pyrococcus horikoshii OT3]
gi|13124601|sp|O74020.1|TOP6B_PYRHO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|3257993|dbj|BAA30676.1| 564aa long hypothetical typeII DNA topoisomerase subunit B
[Pyrococcus horikoshii OT3]
Length = 564
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + IP++FG++L+GTK Q+RG+ G+G A+++++++TG P
Sbjct: 72 YKVIVEDNGPGIPEEYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITTGKPTR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + K N W G I++ V + + R +
Sbjct: 132 VITSTGGEIVEAWVK--IDVQKNEGKIVKKVKHPNPKGWRGTRIEMEVKDVKYVRSRQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A ++ V + F R ++ +P PVE K HP V + +
Sbjct: 190 YWYLKLTAIANPHA-----YIELVEPDGKLVVFPRSSEEIPKPPVEMKPHPKGVMVDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI----------GEMGPEFSPKMAVK----- 374
+ + + ++ +FL EF I + E LI E E K+ K
Sbjct: 245 TMAHRSKRSSVKRFLVSEFSRISEKKIEELIKYVAAIRLLKSEQNEEIKEKLREKLINGD 304
Query: 375 ----------------------------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
LT Q+ I + F+ KF P L P GE
Sbjct: 305 VDSVLRSFGRKWKKEVEKVAKIMEKPPEKLTWQEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G+ L P+ V + S +V+ G PF VE G++ GG+ G I R+ANR+PL
Sbjct: 365 ENIKRGLTGILKPEFVTAVTRSPKVYAGGIPFQVEVGLAYGGQI--SGSEILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W YKI+ + V V+++S +P+ TGK+ I D +EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYKIDSFDSAPLVVLVNVISVHVPYTSTGKQSIA-DIEEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ +L + K + Q +R++ L +
Sbjct: 481 YNEIRLALMDAARKLALYLGGKYRRMYQIKRRKTLEK 517
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP + + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGKIRSLTTIIHEAVTNSLDACEEAGILPTIRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>gi|424811564|ref|ZP_18236815.1| DNA topoisomerase VI, B subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757290|gb|EGQ40871.1| DNA topoisomerase VI, B subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 530
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 212/423 (50%), Gaps = 24/423 (5%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DN GM + +P +FG++L G+K+ L+Q+RG+ G+G + ++++++TG P+ +
Sbjct: 77 RVELRDNAIGMDAETVPKVFGKLLYGSKFHKLQQSRGQQGIGISASAMYAQLTTGEPVTV 136
Query: 212 SSSMRSHNFISFC-KLDIDIHRNIPHVHLHEKRE------NKDRW--HGAEIQVVIEGNW 262
S F ++D + + E ++D + HG I++ +E +
Sbjct: 137 YSKEEGKPCNRFVVRMDTEANEPEIIEQEEIDPEGDQFPGDRDYYFDHGTSIEMTVEAKY 196
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
T + +Y++ A++ PYA+ + + I + R + +P P E K H
Sbjct: 197 TRGHHSVKNYLKHTAIMNPYARIVLR-----EPDGNKIEYPRVANELPEKPREIKPHLHG 251
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
V+L ++ +I + T+ FLQ EF +G+ A + E E +L ++
Sbjct: 252 VELGVVMRMIENSDARTVSSFLQQEFTRVGRKSAVNICEEA--EIDDGRRPNTLEKDEVE 309
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAG 442
+ + +P CLSPAGE L G+ KEL+P+ + V+ G+PF VE G
Sbjct: 310 NLLNAADRTNLQNPPTDCLSPAGEDLLLKGLEKELNPEFTTAVTRKPAVYGGNPFQVEVG 369
Query: 443 VSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT----QDKIG 497
++ GG +G R+AN++PLL+++ V T+ A++ ++WS Y I+Q+ Q +
Sbjct: 370 LAWGGDIADEGSFEELRYANKVPLLYKKSSCVTTK-AIESVDWSRYNISQSGSRPQGPLY 428
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ + I S +PF GKE + + +I +K A+Q+ +L I R+ + Q+E+KR
Sbjct: 429 ISIHIASVWVPFTSEGKEAVA-NYDDIRKEMKLALQEGGRKLGRYIKRQERMEIQEEKKR 487
Query: 558 NLS 560
L+
Sbjct: 488 KLT 490
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+NP KS+ T V+E V+NSLD+ E +P V++ I+E+G K
Sbjct: 16 REISVAEFFEKNKHLLGFENPQKSIITVVKEAVDNSLDACEQDDIIPEVQVLIDEVGDQK 75
>gi|409095997|ref|ZP_11216021.1| DNA topoisomerase VI subunit B [Thermococcus zilligii AN1]
Length = 571
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 57/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + I ++FG++L+GTK Q+RG+ G+G A+++++ ++G
Sbjct: 74 YKVVVEDNGPGIPEEYIAHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQTTSGKATR 133
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S I ++ID+ RN + EK N W G I++ ++ N RSK
Sbjct: 134 VITSTGGDEIIE-AWVNIDVDRNEGKIIKKEKHPNPKGWRGTRIELEVK-NVKYVRSKQG 191
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R +D +P PVE K HP V +
Sbjct: 192 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSDYIPEPPVEMKPHPKGVMTDDV 246
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP---------------------EF 367
L +T K T+ +FL EF I + LI + E
Sbjct: 247 YRLAMKTKKNTVRRFLIGEFSRISDQKVDELIEYIAALRLIKTVEDKNLQEQYYQRLMEG 306
Query: 368 SPKMAVKS---------------------LTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
K +++ LT + I Q F+ KF P L P GE
Sbjct: 307 DVKAVLRAFDGYTKVVKEVAKLMEKPPEKLTWHEAEEIVQAFKYMKFLAPPTHGLRPIGE 366
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ + L P+ V + +V+ G PF VE G++ GG ++ G +++R+ANR+PL
Sbjct: 367 ENIEKGLKEILRPEFVTAVTRPPRVYSGGIPFQVEVGIAYGG-EIPAGFDLYRYANRVPL 425
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A I+W Y+++ ++ + + V+++S +P+ GTGK+ I D ++I
Sbjct: 426 LFD-AGICVTTQAAHSIDWKRYRVDDLENTPLVLMVNVLSVHVPYTGTGKQSIASD-EDI 483
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ V+ AI +L++ + K + Q R++ +
Sbjct: 484 YNEVRLAIMDAARRLQNYLSGKHRRLAQVRRRKTFEK 520
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E P V + IEE+G+
Sbjct: 13 FKIQSVSEFFRRNAAMLGYTGKVRSLTTLVHEAVTNSLDACEEAGIPPYVRVEIEELGEE 72
Query: 83 KFNSMI 88
+ ++
Sbjct: 73 HYKVVV 78
>gi|223478074|ref|YP_002582501.1| DNA topoisomerase VI subunit B [Thermococcus sp. AM4]
gi|214033300|gb|EEB74127.1| DNA topoisomerase VI subunit B [Thermococcus sp. AM4]
Length = 560
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVVVEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S ++ K+D+D +N + EK N D WHG I++ ++ N RSK
Sbjct: 132 VITSTGDDIIEAWVKIDVD--KNEGKIVRKEKHPNPDGWHGTRIELEVK-NVKYMRSKQG 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R +D +P PVE K HP V +
Sbjct: 189 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSDEIPEPPVEMKPHPKGVLTDDV 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIG--------------------------KSLAERLI-G 361
+ +T + ++ +FL EF I + L ERL+ G
Sbjct: 244 YRMAKKTKRQSVRRFLIGEFSRISDKKVDELVEYIAALRLIKKVEDKKIQEQLYERLMKG 303
Query: 362 EMGPEFS------------PKMAVK---SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
E+ KM K LT + I + F+ KF P L P GE
Sbjct: 304 EVKAVLRSFRGYTKVVKQVAKMMEKPPEKLTWHEAEEIVEAFKYMKFLAPPTHGLRPIGE 363
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G + R+ANR+PL
Sbjct: 364 ENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EIPSGFELLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A + I+W Y+++ + + + +++VS +P+ GTGK+ I EI
Sbjct: 423 LFD-AGSCVTTQAARSIDWKRYRVDDLDRTPLVLMINVVSVHVPYTGTGKQSIA-SVDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L++ + K + Q +RK+ +
Sbjct: 481 YNEIRLAIMDAARRLQTYLSGKHRRLYQVKRKKTFEK 517
>gi|57640734|ref|YP_183212.1| DNA topoisomerase VI subunit B [Thermococcus kodakarensis KOD1]
gi|73919880|sp|Q5JH81.1|TOP6B_PYRKO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|57159058|dbj|BAD84988.1| type II DNA topoisomerase VI, subunit B [Thermococcus kodakarensis
KOD1]
Length = 567
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 221/458 (48%), Gaps = 59/458 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVVVEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFI-SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK- 268
+ +S + I ++ K+D+D +N + EK N W G I++ ++ N RSK
Sbjct: 132 VITSTGNDEIIEAWVKIDVD--KNEGKIVKKEKHPNPKGWRGTRIELEVK-NVKYMRSKQ 188
Query: 269 -ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+ Y++ A+ P+A + + I F R +D +P PVE K HP V
Sbjct: 189 GVFWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSDYIPEPPVEMKPHPKGVLTDD 243
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI--------------GEMGPEFSPKMA- 372
+ L +T + T+ +FL EF I + LI ++ ++ K+
Sbjct: 244 VYRLAKKTRRNTVRRFLIGEFSRISDKKVDELIEYIAALRLIKTVEDKKLQEQYYQKLME 303
Query: 373 --VKS-------------------------LTSQQIVRIHQLFRQAKFDDPSGGCLSPAG 405
VK+ LT + I + F+ KF P L P G
Sbjct: 304 GHVKAVLRAFKGYTKVVKQVAKMMEKPPEKLTWHEAEEIVEAFKYMKFLAPPTHGLRPIG 363
Query: 406 EYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIP 464
E N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G +++R+ANR+P
Sbjct: 364 EENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGIAYGG-EIPAGFDLYRYANRVP 422
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKE 523
LLF+ G VT A + I+W YKI+ + + + +++VS +P+ GTGK+ I E
Sbjct: 423 LLFD-AGSCVTTQAARSIDWKRYKIDDLDRAPLVLMINVVSVHVPYTGTGKQSIA-SVDE 480
Query: 524 IASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
I + ++ AI +L++ + K + Q +R++ +
Sbjct: 481 IYNEIRLAIMDAARRLQTYLSGKHRKLAQVKRRKTFEK 518
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E P V + IEE+G
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKVRSLTTLVHEAVTNSLDACEEAGIPPYVRVEIEELGNE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVVV 76
>gi|240103482|ref|YP_002959791.1| DNA topoisomerase VI subunit B [Thermococcus gammatolerans EJ3]
gi|259534016|sp|C5A6R5.1|TOP6B_THEGJ RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|239911036|gb|ACS33927.1| Type II DNA topoisomerase VI, subunit B (Top6B) [Thermococcus
gammatolerans EJ3]
Length = 561
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVVVEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S ++ K+D+D +N + EK N D WHG I++ ++ N RSK
Sbjct: 132 VITSTGDEIIEAWVKIDVD--KNEGKIVKKEKHPNPDGWHGTRIELEVK-NVKYMRSKQG 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 189 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPEPPVEMKPHPKGVLTDDV 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIG--------------------------KSLAERLI-G 361
+ +T + ++ +FL EF I + L ERL+ G
Sbjct: 244 YRMAKKTKRQSVRRFLIGEFSRISDKKVDELIEYVAALRLIKKVGDKKVQEQLYERLMKG 303
Query: 362 EMGPEFS------------PKMAVK---SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
E+ KM K LT + I + F+ KF P L P GE
Sbjct: 304 EVKAVLRSFRGYTKVVKQVAKMMEKPPEKLTWHEAEEIVEAFKYMKFLAPPTHGLRPIGE 363
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G + R+ANR+PL
Sbjct: 364 ENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EIPSGFELLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A + I+W YK++ + + + +++VS +P+ GTGK+ I EI
Sbjct: 423 LFD-AGSCVTTQAARSIDWKRYKVDDLDRTPLVLMINVVSVHVPYTGTGKQSIA-SVDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L++ + K + Q +RK+ +
Sbjct: 481 YNEIRLAIMDAARRLQTYLSGKHRRLYQVKRKKTFEK 517
>gi|220918121|ref|YP_002493425.1| DNA topoisomerase VI subunit B [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955975|gb|ACL66359.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
2CP-1]
Length = 697
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/482 (25%), Positives = 220/482 (45%), Gaps = 77/482 (15%)
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALI 199
+G +GE F V +DNG G+ P +FG++L G+K+ LKQ+RG+ G+G A +
Sbjct: 161 EGELTKGEGRFV-VVVEDNGPGIVKAQAPKIFGKLLYGSKFHRLKQSRGQQGIGISAAAM 219
Query: 200 WSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWH--GAEIQVV 257
+ +++TG PI + S ++ ID +N P V + D WH G +++
Sbjct: 220 YGQLTTGQPIRMISRTGKGKPAFGLEIQIDTRKNNPVVTAERQL---DDWHEHGTRVELE 276
Query: 258 IEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETK 317
I NW + + Y+ A+ P+A F + + + + F R TD +P E K
Sbjct: 277 IVANWQQGQRFVNRYVEHTALSNPHAAFHY-----LRPRQPPLSFPRATDELPKEAQEIK 331
Query: 318 HHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT 377
HP V+L + + A++ + FLQ F + ++A+ ++ + G F ++ + +
Sbjct: 332 PHPHGVELGALMRMAADSKSHDVRGFLQAAFSRVSSTVADEIVKKAG--FKARVRPRDVA 389
Query: 378 SQQIV--RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELH----------------- 418
+ + V ++HQ K P LSP G+ +R G++ L+
Sbjct: 390 ADREVARKLHQAIGATKIMAPPTQILSPIGDTLMRKGLVSFLNVIETEGPEEEEQLDLDA 449
Query: 419 --------------------PD---------------MVATYSGSAQVFEGHPFIVEAGV 443
PD +AT + +V+ G+PF VE G+
Sbjct: 450 ARKKKATRKGKAAKAEAPEVPDAPPEEGVEKIKGHNYFIATVTRPPKVYRGNPFQVEVGL 509
Query: 444 SVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GG + + +FRFANR+PLLF++G +T A+ + +W +Y ++Q + + V
Sbjct: 510 AYGGSWPADKPIELFRFANRVPLLFQRGACGMTE-AIVKTDWRNYLLSQPRGSLPVGPMA 568
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
V I S +PF KE + EI ++ A Q+C +L + I RK + + Q ++R
Sbjct: 569 LLVHIASVWVPFTSEAKEAVA-HYPEITREIQLAAQECGRKLAAHI-RKRKHADYQAQRR 626
Query: 558 NL 559
+L
Sbjct: 627 SL 628
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 13 KSPK---TPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESIS 67
+SPK T + A +Q+ S +EFF +N+++ GFDN K+L TT++E V+NSLD+ E
Sbjct: 83 RSPKRRATAEQMAQQQREISISEFFTKNRHLLGFDNASKALLTTIKEAVDNSLDACEEAG 142
Query: 68 ELPVVEITIEEIG 80
LP + I + ++G
Sbjct: 143 ILPEITIEVRDLG 155
>gi|341581301|ref|YP_004761793.1| DNA topoisomerase VI subunit B [Thermococcus sp. 4557]
gi|340808959|gb|AEK72116.1| DNA topoisomerase VI subunit B [Thermococcus sp. 4557]
Length = 565
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 222/458 (48%), Gaps = 59/458 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIIEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFI-SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK- 268
+ +S I ++ K+D+D RN + EK N W G I++ ++ N RSK
Sbjct: 132 VITSTGDDKIIEAWVKIDVD--RNEGKIVKKEKHPNPKGWRGTRIELEVK-NVRYVRSKQ 188
Query: 269 -ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V
Sbjct: 189 GVYWYLKLTAIANPHAH-----IELIEPDGRLIVFPRSSEDVPEPPVEMKPHPRGVLTDD 243
Query: 328 IKGLIAETSKGTLLQFLQHEFV--------------------------NIGKSLAERLI- 360
+ + +T + ++ +FL EF N+ + L ERL+
Sbjct: 244 VYRMAKKTRRSSVKRFLVGEFSRISDKKIDELVEYIAALRLIKTEDDKNVQEQLYERLMK 303
Query: 361 GEM--------GPEFSPKMAVK-------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAG 405
GE+ G K K L+ + I + F+ KF P L P G
Sbjct: 304 GEVKAVLRSFRGYTKVVKQVAKLMEKPPEKLSWHEAEEIVEAFKYMKFLAPPTHGLRPIG 363
Query: 406 EYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIP 464
E N+ G+ L P+ V + S +V+ G PF VE G++ GG ++ G + R+ANR+P
Sbjct: 364 EENIEKGLTNILKPEFVTAVTRSPKVYSGGIPFQVEVGLAYGG-EIPGGFELLRYANRVP 422
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKE 523
LLF+ G VT A + ++W YK++ + + + ++++S +P+ GTGK+ I + +E
Sbjct: 423 LLFD-AGSCVTTLAARSVDWRRYKVDDLDRAPLVLMINVISVHVPYTGTGKQSIA-NVEE 480
Query: 524 IASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
I + ++ AI +L++ + K + Q +R+R +
Sbjct: 481 IQNEIRLAIMDAARRLQTYLSGKHRRLHQAKRRRTFEK 518
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP V + IEE+G+
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKIRSLTTVIHEAVTNSLDACEEAGILPYVRVEIEELGRE 70
Query: 83 KFNSMI 88
+ +I
Sbjct: 71 HYKVII 76
>gi|333986520|ref|YP_004519127.1| DNA topoisomerase VI subunit B [Methanobacterium sp. SWAN-1]
gi|333824664|gb|AEG17326.1| DNA topoisomerase VI, B subunit [Methanobacterium sp. SWAN-1]
Length = 521
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 202/422 (47%), Gaps = 21/422 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + KDNG G+P + I ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 67 RVDKDHYILKHKDNGPGIPKNYITKVYCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFCKLD--IDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT 263
G P + S R N + ++ +D+ +N V + E E+Q + +++
Sbjct: 127 GQPARVVSGYRDGNDLKGIEMTFKMDVKKNKGLVLKRKPVEVHSTGVLIELQFK-DVSYS 185
Query: 264 TYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
YMR+ + P+A+ +F+ +K + F R TDV+PP+P E HP V
Sbjct: 186 LSEQGAFEYMRRTVIANPHAKIIFR--DPTGQKFI---FERATDVIPPLPKEVLPHPKGV 240
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+ + T K L + + G + + + K + ++ +
Sbjct: 241 TADDLIFMAKHTDKRRFRSLLTSSLSRMSNKRINEIEEATGIDLNKR--PKDMKWEEAEQ 298
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAG 442
I LF Q F P L P G+ + GI + L P+ VAT + + + G FI+EAG
Sbjct: 299 IVDLFGQMDFMAPPTSGLIPIGKEQIEKGIREILDPEFVATTTRKPKTYRGGVSFIIEAG 358
Query: 443 VSVGGK------DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK- 495
+S GGK D K+ I RFANR+PL F+QG +T A+K I+W Y I ++
Sbjct: 359 ISYGGKSGRVVGDQKRA-EIMRFANRVPLTFDQGSCAITE-ALKSIDWKRYGIRDLENAP 416
Query: 496 IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
I VFV+IVST +P+ TGK+ + + EI V+ A + L+ I K +E++ R
Sbjct: 417 ITVFVNIVSTNVPYLSTGKQSVAPEP-EILHEVRQATMKIARSLQKYINAKRAAKEEEMR 475
Query: 556 KR 557
+
Sbjct: 476 SK 477
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF NK + GF +SL EL+ NSLD+AE P + I ++ + K
Sbjct: 12 FKELSASEFFRRNKQMLGFSGKIRSLTMVFHELITNSLDAAEEAGIQPEITIDLKRVDKD 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|84490127|ref|YP_448359.1| DNA topoisomerase VI subunit B [Methanosphaera stadtmanae DSM 3091]
gi|84373446|gb|ABC57716.1| type II DNA topoisomerase VI, subunit B [Methanosphaera stadtmanae
DSM 3091]
Length = 554
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 205/416 (49%), Gaps = 21/416 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y + DNG G+P D I ++ ++ +G+K+ Q+RG+ GLG ++ S+M+TG P++I
Sbjct: 73 YLLKHADNGPGIPEDYITKVYCQMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTTGQPVKI 132
Query: 212 SSSMRSHNFISFCKLDI--DIHRNIPHVHLHEKRENKDRW-HGAEIQVVIEGNWTTYRSK 268
S + N + ++ + D+ +N + L++K DR G EI+ + +++
Sbjct: 133 RSRYKDGNELKGIEMTVKLDVKKNT-GIILNKKEFETDRTGSGIEIEFK-DVSYSMSEQG 190
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
Y+R+ + P+A+ +FK + + T F R TD +PP+P E HP V I
Sbjct: 191 AYEYIRRTVIGNPHARIVFK---DPTGRKYT--FERATDKIPPLPKEVLPHPKGVTADDI 245
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
L T+K L + + + + G + + + KS+T ++ + Q F
Sbjct: 246 IYLCKGTNKKRFKNLLMDSLSRVSAAKIKEIQEATGIDMNKR--PKSITWKEAEAVVQQF 303
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGG 447
+ KF P L P G + GI + L P+ + Q + G FIVEAG++ GG
Sbjct: 304 DKMKFMAPPTNGLKPIGSEQIEKGINEILLPEFSTAITRKPQAYRGGVSFIVEAGIAYGG 363
Query: 448 KD-----VKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVS 501
++ I RFANR+PL F+QG +T A+K I+W Y + + I VFV+
Sbjct: 364 NSGRLIGSQRKAEIMRFANRVPLTFDQGSCAITE-ALKSIDWRRYGVRDLDNAPISVFVN 422
Query: 502 IVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
I+ST +P+ TGK+ + + +EI ++ A + +L+ I K + ++ R +
Sbjct: 423 IISTNVPYLSTGKQSVAPE-EEIVREIRQATMKIARKLEKYIRTKKAAKNEEMRAK 477
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ + +EFF NK + GF +SL EL+ NSLD+ E + LP + I ++ +GK
Sbjct: 12 FKELTASEFFRRNKQMLGFSGKIRSLTIVFHELITNSLDACEEVGILPDITIELKRLGKD 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|312136520|ref|YP_004003857.1| DNA topoisomerase vi, b subunit [Methanothermus fervidus DSM 2088]
gi|311224239|gb|ADP77095.1| DNA topoisomerase VI, B subunit [Methanothermus fervidus DSM 2088]
Length = 521
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 208/425 (48%), Gaps = 27/425 (6%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + +Y + +DNG G+P D +P +F ++ +G+K+ Q+RG+ GLG +++S+M+T
Sbjct: 67 RIDKDYYVLRHQDNGPGIPEDYVPKVFCKMFAGSKFRNIQSRGQQGLGCSGCVLFSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTY 265
G P+ + S + I ++ + + + EK E G +++ ++ + T
Sbjct: 127 GKPVRVISKYKEDGEIKGVEMLLQLDEKKNEGVILEKNEVDPDGTGVFVELHLK-DVTYS 185
Query: 266 RSK--ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
RS+ Y+R+ + P+AQ FK + +F R + +PP+P E HP +
Sbjct: 186 RSEQGAFEYIRRTMIGNPHAQITFK-----DPRGKIYKFKRASTKIPPLPKEIPPHPKGI 240
Query: 324 ---DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
DLL + +++ + FL + ++ + L + + + K L +
Sbjct: 241 TADDLLY---MAKHSNRRKIKTFLMASLSRMSQNKIKELEKLVNVDLDKR--PKDLKWDE 295
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIV 439
I F++ F P L P GE + + K L+P+ VA+ + ++G PFI
Sbjct: 296 AEEIVNAFKKMDFMSPPTSGLIPIGESQIEKSMKKMLNPEFVASTTRKPATYKGGIPFIT 355
Query: 440 EAGVSVGGK------DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ 493
EA ++ GG D ++ I RFANR+PL F+QG +T A+K I+W Y + +
Sbjct: 356 EAAIAYGGNAGRKVGDQRKS-EIIRFANRVPLTFDQGSCAITE-AVKSIDWKRYGVRDFE 413
Query: 494 DK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQ 552
+ I VFV+IVST +P+ TGK+ I + EI V+ A+ +L+ + K RE+
Sbjct: 414 NSPISVFVNIVSTNVPYLSTGKQSIAPEP-EILHEVRQAVMDVARKLRRYLRSKAIAREE 472
Query: 553 QERKR 557
++ R
Sbjct: 473 LQKYR 477
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ +P+EFF +N+ + GF +SL EL+ NSLD+AE LP +EI +E I K
Sbjct: 12 FKELTPSEFFRKNRQMLGFSGKIRSLTMVFHELITNSLDAAEEAGILPNIEIELERIDKD 71
Query: 83 KF 84
+
Sbjct: 72 YY 73
>gi|390962071|ref|YP_006425905.1| DNA topoisomerase VI subunit B [Thermococcus sp. CL1]
gi|390520379|gb|AFL96111.1| DNA topoisomerase VI subunit B [Thermococcus sp. CL1]
Length = 562
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 218/458 (47%), Gaps = 59/458 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIIEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFI-SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK- 268
+ +S + I ++ K+D+D +N + EK N W G I++ ++ N RSK
Sbjct: 132 VITSTGNDEIIEAWVKIDVD--KNEGKIVKKEKHPNPKGWRGTRIELEVK-NVRYVRSKQ 188
Query: 269 -ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+ Y++ A+ P+A + + I F R ++ +P P E K HP V
Sbjct: 189 GVYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPKPPTEMKPHPRGVLTDD 243
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP-----------------EFSPK 370
+ + +T + T+ +FL EF I + L+ + E K
Sbjct: 244 VYRMARKTRRSTVRRFLVGEFSRISDKKVDELVEYIAALRLIKTEKDKKVQEQLYERLAK 303
Query: 371 MAVKS-------------------------LTSQQIVRIHQLFRQAKFDDPSGGCLSPAG 405
VK+ LT Q+ I + F+ KF P L P G
Sbjct: 304 GEVKAVLRSFRGYTKVVKQVAKLMEKPPEKLTWQEAEEIVEAFKYMKFLAPPTHGLRPIG 363
Query: 406 EYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIP 464
E N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G + R+ANR+P
Sbjct: 364 EENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EIPSGFELLRYANRVP 422
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKE 523
LLF+ G VT A + I+W YK++ + + + ++++S +P+ GTGK+ I + +E
Sbjct: 423 LLFD-AGSCVTTLAARSIDWKRYKVDDLDRAPLVLMINVISVHVPYTGTGKQSIA-NVEE 480
Query: 524 IASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
I + ++ AI +L++ + K + Q +R++ +
Sbjct: 481 IQNEIRLAIMDAARKLQTYLSGKHRRLYQVKRRKTFEK 518
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E LP V + IEE+GK
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKIRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGKE 70
Query: 83 KFNSMI 88
+ +I
Sbjct: 71 HYKVII 76
>gi|212223913|ref|YP_002307149.1| DNA topoisomerase VI subunit B [Thermococcus onnurineus NA1]
gi|229558492|sp|B6YVS9.1|TOP6B_THEON RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|212008870|gb|ACJ16252.1| type II DNA topoisomerase VI, subunit B [Thermococcus onnurineus
NA1]
Length = 563
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/457 (26%), Positives = 218/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEKFITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S ++ K+D+D +N + E+ N W G I++ ++ N RSK
Sbjct: 132 VITSTGGDIIEAWVKIDVD--KNEGKIVKKERHPNPKGWRGTRIELEVK-NVRYVRSKQG 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 189 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPKPPVEMKPHPKGVLTDDV 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGK--------------------------SLAERLI-G 361
+ +T + T+ +FL EF I L ERL+ G
Sbjct: 244 YRMAKKTRRNTVRRFLIGEFSRISDKKVDELIKYIAALRLIKTEKDKAVQDQLYERLMNG 303
Query: 362 EM--------GPEFSPKMAVK-------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
E+ G K K L+ + I + F+ KF P L P GE
Sbjct: 304 EVDKVLRSFKGYTKVVKQVAKLMEKPPEKLSWHEAEEIVEAFKYMKFLAPPTHGLRPIGE 363
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G ++ R+ANR+PL
Sbjct: 364 ENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EISSGFDLLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A + I+W YK++ + + + ++++S +P+ GTGK+ I + EI
Sbjct: 423 LFD-AGSCVTTLAARSIDWKRYKVDDLERAPVVLMINVISVHVPYTGTGKQSIA-NVDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L++ + K + Q +RK+ +
Sbjct: 481 HNEIRLAIMDAARRLQTYLSGKHRRLYQVKRKKTFEK 517
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E LP V + IEE+G+
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKIRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGRE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>gi|315230263|ref|YP_004070699.1| DNA topoisomerase VI subunit B [Thermococcus barophilus MP]
gi|315183291|gb|ADT83476.1| DNA topoisomerase VI subunit B [Thermococcus barophilus MP]
Length = 570
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 214/458 (46%), Gaps = 58/458 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKIIVEDNGPGIPEKFITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S I + ID+ +N + K N W G I++ ++ N RSK
Sbjct: 132 VITSTGGDEIIE-AWVKIDVEKNEGKIVKKIKHPNPTGWRGTRIELEVK-NVKYVRSKQG 189
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 190 VFWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPKPPVEMKPHPRGVMTDDV 244
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP--------------EFSPKMA-- 372
+ T K T+ +FL EF I + LI + E ++A
Sbjct: 245 YRMAKRTRKNTVKRFLISEFSRISDRKIDELIKYIAAIRLINSEEDKRIKDELFERLAKG 304
Query: 373 ---------------------------VKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAG 405
+ LT + I + F+ KF P L P G
Sbjct: 305 EVDLILRSYGRRAKKAIREVQKLMDKPPEKLTWHEAEEIVEAFKYIKFLAPPTHGLRPIG 364
Query: 406 EYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIP 464
E N+ G+ L P+ V + +V+ G PF VE G++ GG +++ N+ R+ANR+P
Sbjct: 365 EENIVKGLTGILKPEFVTAVTRPPKVYRGGIPFQVEIGLAYGG-ELESSFNLLRYANRVP 423
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKI-NQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKE 523
LLF+ G VT TA + I+W YK+ + + + + ++++S +P+ TGK+ I ++ E
Sbjct: 424 LLFDAGA-CVTTTAARSIDWKRYKVEDLDRAPLTLLINVISVHVPYTSTGKQSIANE-DE 481
Query: 524 IASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
I ++ AI + +L++ + K + Q +RK+ L +
Sbjct: 482 IYEEIRLAIMEAARRLQTYLSGKHRKLYQVKRKKTLQK 519
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E LP V + IEE+G+
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKIRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGRE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKIIV 76
>gi|389852868|ref|YP_006355102.1| DNA topoisomerase VI subunit B [Pyrococcus sp. ST04]
gi|388250174|gb|AFK23027.1| DNA topoisomerase VI subunit B [Pyrococcus sp. ST04]
Length = 564
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 218/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P D IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEDYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + + N W G I++ V + + + +
Sbjct: 132 VITSTGDDIVEAWVK--IDVQKNEGKIVKKLRHPNPRGWRGTRIELEVKDVKYVRSKQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A + + I F R +D +P PVE K HP V +
Sbjct: 190 YWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSDEIPKPPVEMKPHPKGVMTDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIG--------------------------KSLAERLI-GE 362
+ ++ + ++ +FL EF I + L ERL+ GE
Sbjct: 245 TMAHKSKRSSVRRFLVSEFSRISDKKVDELIKYIAAIRLIKSEENKELREQLYERLMNGE 304
Query: 363 MGP-------------EFSPKMAVK---SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
+ E K+ K LT + I + F+ KF P L P GE
Sbjct: 305 VDAVLKSFGRKWKKVVEQVAKIMEKPPEKLTWHEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G+ L P+ V + +V+ G PF VE G++ GG + R+ANR+PL
Sbjct: 365 ENIKRGLSSILKPEFVTAITRPPKVYSGGIPFQVEVGIAYGGHISSS--EVLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQ-DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W Y+I+ + I V V+++S +P+ TGK+ I D +EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYRIDSFETSPIVVLVNVISVHVPYTSTGKQSIA-DIEEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ + +L + K + Q +R++ L +
Sbjct: 481 HNEIRLALMEAARRLAFYLGGKFRRLYQVKRRKTLEK 517
>gi|290559009|gb|EFD92389.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 577
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 208/403 (51%), Gaps = 19/403 (4%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGL 207
A + ++ DNG G+ IP++FGR+L G+K+ ++Q+RG+ G+G A+++S+++TG
Sbjct: 108 APIFLISIMDNGPGIIESKIPDIFGRMLYGSKFQSMRQSRGQQGIGIHSAVLYSQLTTGK 167
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
P I S ++S K+ I+I +N P V ++ + G I + IEG + +
Sbjct: 168 PATIVSKVKSSKKAKMMKVQINILKNEPEVLEEKEEDFPYE-SGTRIDLEIEGIYISSNK 226
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+ Y+R+ A++ P+A ++ ++ EK I + R + +P PV K HP +++ +
Sbjct: 227 GLDEYVRRTALVNPHATIIY--INPNGEK---ITYKRVIERLPKEPVSIKPHPEGLEMGI 281
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQL 387
++ +++ T++ L++E + +++A++++ +G PK+ + + Q I +
Sbjct: 282 FMRILKNSTERTVIAVLENELSRVSRAVADQVLKSVG--IDPKLKPQEIDRVQANSILKA 339
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
+ P CLSP G L + KE P+ + + + +V+ G PF +E + GG
Sbjct: 340 LQSLDLMRPQTDCLSPIGGEELEKSLKKEYSPEFIKSVTRKPEVYRGMPFQIEVAAAYGG 399
Query: 448 KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSI 502
+ + RFAN+IPLLF+ +T++ + +++S Y + + ++K+ V + I
Sbjct: 400 EIKSDKAMLMRFANKIPLLFDSSSCALTQSFLG-VDYSRYGL-KVENKVPVGQLVFIIHI 457
Query: 503 VSTKIPFKGTGKEYIGDD---TKEIASAVKSAIQQCCIQLKSK 542
S +P+ K + TKEI A++ ++ + L K
Sbjct: 458 ASVWVPYTNESKNSVASYPVITKEIKLALQELVRNLSVFLNRK 500
>gi|374723605|gb|EHR75685.1| DNA topoisomerase VI subunit B [uncultured marine group II
euryarchaeote]
Length = 667
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 199/403 (49%), Gaps = 31/403 (7%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
++ +DNG G+P I +FG++L G+++ ++Q+RG+ G+G +++ +++TG +
Sbjct: 76 KLIVEDNGPGIPQKSIEKVFGQLLFGSRFHAIRQSRGQQGIGITGVVMYCQLTTGRTTHV 135
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRE---NKD---RWHGAEIQVVIEGNWTTY 265
S + + + +D +N ++ RE N+D + HG E+ ++ +
Sbjct: 136 RSKISVEPTAAVVDIGLDTRKN-KATKSNQGREIWYNEDGSAKEHGTEVTAQMKAKYQKG 194
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
R + Y+R +++ P+A+ F + + R T+ +P K HP ++L
Sbjct: 195 RQSVWQYLRMTSIVNPHAEITF-----TDPEGEVHHWPRVTERLPTKVEGIKPHPHGIEL 249
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
++ + +E++ L FL+ F + ++ L + E K KS+ + QI +
Sbjct: 250 GQLQRMASESTDSRLTVFLRMNFSGVSARASKELC--VAAEIDEKTKPKSMNADQIRALL 307
Query: 386 QLF--------RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPF 437
+ F + K +P CLSP E ++ G+ K + ++T + + V +G+P+
Sbjct: 308 EAFQGERHVKGKPVKLLNPPTNCLSPIEEMLIKKGLSKTIDSRFISTLTRAPAVTQGNPY 367
Query: 438 IVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK- 495
VE G+ GG + + + RFANR+PL+++QGG ++T+ A++ ++W Y ++Q K
Sbjct: 368 QVEVGLIFGGNMPADKPVEVLRFANRVPLMYQQGGCLLTK-AIESVDWRQYGLDQPGAKG 426
Query: 496 -----IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQ 533
+ V + ST + F KE + D+ + I A K+ ++
Sbjct: 427 VPKGPAAILVHLASTNVQFTSEAKEALADNGEVIEEARKAMLE 469
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
KQ + +EFF +NK+ GFD+ +SL T V+E V+N+LD+ E LP + + IE+I K
Sbjct: 13 KQVAISEFFEKNKHFLGFDSLARSLITAVKEAVDNALDACEEARILPTIRVVIEKIDTKK 72
>gi|291333528|gb|ADD93225.1| DNA topoisomerase VI B subunit [uncultured archaeon
MedDCM-OCT-S08-C37]
Length = 705
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 198/400 (49%), Gaps = 31/400 (7%)
Query: 156 CKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSS 214
+DNG G+P I +FG++L G+++ ++Q+RG+ G+G +++S+++TG P + S
Sbjct: 79 VEDNGPGIPQKSIEKVFGQLLFGSRFHAIRQSRGQQGIGITGVVMYSQLTTGKPTHVRSK 138
Query: 215 MRSHNFISFCKLDIDIHRN--IPHVHLHEKRENKD---RWHGAEIQVVIEGNWTTYRSKI 269
+ + + + + +D +N + E E KD + HG E+ ++ + R +
Sbjct: 139 ISTESTAAVVDIGLDTRKNKAVKSNQGRELWELKDGTMKQHGLEVTTQLKAKYQKGRQSV 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+R +++ P+A+ F+ E + + R T+ +P K HP ++L ++
Sbjct: 199 WQYLRMTSIVNPHAEI--NFIDPDGEVH---HWPRVTERLPTKVESIKPHPHGIELGQLQ 253
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF- 388
++ E++ L FL+ F + A+ L E + K + I + + F
Sbjct: 254 RMLNESTDSRLSVFLRMNFSGVSNRAAKELCS--AAELDVSVKPKQMKPDDIRALLEAFQ 311
Query: 389 -------RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEA 441
+ K +P CLSP E ++ G+ K + + T + + V +G+P+ +E
Sbjct: 312 GERMFNGKPVKMLNPPTNCLSPIEEMLIKKGLSKTIDSRFITTMTRAPNVSQGNPYQIEV 371
Query: 442 GVSVGGKDV--KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK---- 495
G+ GG D+ + + + RFANR+PL+++QGG ++T+ A++ ++W Y ++Q K
Sbjct: 372 GLIFGG-DMPGDKAVEVLRFANRVPLMYQQGGCLLTK-AIESVDWRQYGLDQPGAKGVPK 429
Query: 496 --IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQ 533
+ V + ST + F KE + ++ + I A K+ ++
Sbjct: 430 GPAAILVHLASTNVQFTSEAKEALAENEEVIEEARKAMLE 469
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
KQ + +EFF +NK+ GFD+ +SL T V+E V+N+LD+ E LP + + I+++
Sbjct: 13 KQVAISEFFEKNKHFLGFDSLSRSLITAVKEAVDNALDACEEARILPEINVEIKKL 68
>gi|408405570|ref|YP_006863553.1| type 2 DNA topoisomerase 6, subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366166|gb|AFU59896.1| type 2 DNA topoisomerase 6, subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 681
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 203/466 (43%), Gaps = 77/466 (16%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+ +TC+DNG G+P D +P L+ KY KQ RG FG+G KM +S T P++
Sbjct: 85 LWTITCEDNGIGVPLDKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTIHPLK 144
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRW----HGAEIQVVIEGNWT--- 263
+ S + +L DI N P V + ++ G ++ V+ +
Sbjct: 145 VWSKSHEEGSEYYFELRTDISTNKPIVLAKRPAKGEESRIVGDSGFRVEAVLHAKLSPIT 204
Query: 264 --TYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS 321
++KI Y+ Q +++ PYA + E E VT F RRT+VMP E HP+
Sbjct: 205 RNNIKAKINEYISQTSIVNPYAIIEY----ETDEGKVT--FDRRTEVMPQPAKEVLPHPA 258
Query: 322 SVDLLLIKGLIAE--TSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
+DL +K I +K TL L F + A+ +I + G E P
Sbjct: 259 DMDLQTLKKAIMNFMNNKTTLQGVLAASFQKMSSEKAKDIIAKAGLENKPADKYSENELI 318
Query: 380 QIVRI--HQLFRQAKFDDPSGGCLSPAGEYNLRLGI------------------------ 413
+IV++ H F+QA D LSP GE L G+
Sbjct: 319 EIVKVCKHMPFQQANTDH-----LSPIGEEILTTGMTSEYTIVTTKEVVPAAEGSGAPEV 373
Query: 414 ------IKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLF 467
+K L P + A Y+ V P IVE G++ GG D+ ++RFAN+IPLL+
Sbjct: 374 QKPQITVKVLKPSLTA-YASRTCVINNRPTIVECGIAYGG-DI-PSFKLYRFANKIPLLY 430
Query: 468 EQGGDVVTRTAMKRINWSSYKINQTQDK------------------IGVFVSIVSTKIPF 509
++G DV R + + + I + + K + +F I STKIP+
Sbjct: 431 DEGSDVA-REVVSEVEINKMGITKKEAKEQFANPEVKSDRAVELLPLHIFFHICSTKIPY 489
Query: 510 KGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
K GKE I + E+ +K + + ++ ++I ++++ +E Q R
Sbjct: 490 KTAGKESIASEG-ELKKYMKYCLSELYRKVSAQIRKELRMKEAQSR 534
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 15 PKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEI 74
P T + +K+ +EFF +N +AGF + LY VREL+ENSLDS E+ LP + +
Sbjct: 16 PLTKGKVRYDKKAESEFFVDNSALAGFTT-ERILYMAVRELIENSLDSCETGHILPKISL 74
Query: 75 TI 76
++
Sbjct: 75 SL 76
>gi|167042186|gb|ABZ06919.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
[uncultured marine crenarchaeote HF4000_ANIW93H17]
Length = 642
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 149/320 (46%), Gaps = 71/320 (22%)
Query: 16 KTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEIT 75
K +E + Q SP+EFF N+++AGF NP +SLYT VRE +ENSLD+ + LP V ++
Sbjct: 30 KMSSEESFTQISPSEFFYRNRDLAGFSNPTRSLYTAVREFIENSLDACDQKGILPDVHMS 89
Query: 76 IEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVK 135
I VD E+ D K
Sbjct: 90 ------------IKAVDAEKPDPKQ----------------------------------- 102
Query: 136 EPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAK 195
Y ++ +DNG G+ +P FG VL G+K+GLKQ RG FGLGA
Sbjct: 103 ----------------YILSVRDNGPGIESSHVPLAFGTVLYGSKFGLKQARGMFGLGAT 146
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
MA+++ +++T P+ + SS + L +DI +N P + HE +E G +
Sbjct: 147 MAILYGQITTNKPLIVKSSTDGKIQDEYEML-LDIQKNKPVILKHETKEVAK--AGLSVS 203
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
+ +EG+++ SKI Y+ Q ++ITPYA F K R+++ MPP P
Sbjct: 204 IRLEGDYSKAGSKIRDYVYQTSLITPYATITFD-----DPKGDRYRYTKVVRTMPPSPTI 258
Query: 316 TKHHPSSVDLLLIKGLIAET 335
+ HP +D+ I+ ++ +T
Sbjct: 259 IRPHPHGIDVETIRRMLLDT 278
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 12/193 (6%)
Query: 332 IAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+A T +G TL FL F +G + A + E +F P+ + ++T+Q++V++ +
Sbjct: 381 LASTVQGETLTSFLSKRFQRVGPTTALKF-AEFA-KFKPEHRIGTMTNQELVKLTDALQS 438
Query: 391 AKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
FDD P CL+P GE L G+ + PD +A A + G PFI+E G++ GG
Sbjct: 439 --FDDFMAPDPSCLAPLGESPLEKGMQRFFEPDFLAVVQRGASAYSGFPFIIEMGIAYGG 496
Query: 448 KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTK 506
K +G+ ++RFANRIPLL+++G DVV + + +WS YK+ D V VS I ST+
Sbjct: 497 KIASRGIKVYRFANRIPLLYDEGSDVVLK-VVNDTDWSRYKVK--GDPPLVIVSHICSTR 553
Query: 507 IPFKGTGKEYIGD 519
IP+K GKE + D
Sbjct: 554 IPYKTVGKENVAD 566
>gi|167044314|gb|ABZ08993.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
[uncultured marine crenarchaeote HF4000_APKG6B14]
Length = 638
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 149/320 (46%), Gaps = 71/320 (22%)
Query: 16 KTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEIT 75
K +E + Q SP+EFF N+++AGF NP +SLYT VRE +ENSLD+ + LP V ++
Sbjct: 26 KMSSEESFTQISPSEFFYRNRDLAGFSNPTRSLYTAVREFIENSLDACDQKGILPDVHMS 85
Query: 76 IEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVK 135
I VD E+ D K
Sbjct: 86 ------------IKAVDAEKPDPKQ----------------------------------- 98
Query: 136 EPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAK 195
Y ++ +DNG G+ +P FG VL G+K+GLKQ RG FGLGA
Sbjct: 99 ----------------YILSVRDNGPGIESSHVPLAFGTVLYGSKFGLKQARGMFGLGAT 142
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
MA+++ +++T P+ + SS + L +DI +N P + HE +E G +
Sbjct: 143 MAILYGQITTNKPLIVKSSTDGKIQDEYEML-LDIQKNKPVILKHETKEVAK--AGLSVS 199
Query: 256 VVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVE 315
+ +EG+++ SKI Y+ Q ++ITPYA F K R+++ MPP P
Sbjct: 200 IRLEGDYSKAGSKIRDYVYQTSLITPYATITFD-----DPKGDRYRYTKVVRTMPPSPTI 254
Query: 316 TKHHPSSVDLLLIKGLIAET 335
+ HP +D+ I+ ++ +T
Sbjct: 255 IRPHPHGIDVETIRRMLLDT 274
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 12/193 (6%)
Query: 332 IAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+A T +G TL FL F +G + A + E +F P+ + ++T+Q++V++ +
Sbjct: 377 LASTVQGETLTSFLSKRFQRVGPTTALKF-AEFA-KFKPEHRIGTMTNQELVKLTDALQS 434
Query: 391 AKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
FDD P CL+P GE L G+ + PD +A A + G PFI+E G++ GG
Sbjct: 435 --FDDFMAPDPSCLAPLGESPLEKGMQRFFEPDFLAVVQRGASAYSGFPFIIEMGIAYGG 492
Query: 448 KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTK 506
K +G+ ++RFANRIPLL+++G DVV + + +WS YK+ D V VS I ST+
Sbjct: 493 KIASRGIKVYRFANRIPLLYDEGSDVVLK-VVNDTDWSRYKVK--GDPPLVIVSHICSTR 549
Query: 507 IPFKGTGKEYIGD 519
IP+K GKE + D
Sbjct: 550 IPYKTVGKENVAD 562
>gi|14520810|ref|NP_126285.1| DNA topoisomerase VI subunit B [Pyrococcus abyssi GE5]
gi|13124623|sp|Q9V135.1|TOP6B_PYRAB RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|5458026|emb|CAB49516.1| Top6B DNA topoisomerase VI, subunit B [Pyrococcus abyssi GE5]
gi|380741352|tpe|CCE69986.1| TPA: DNA topoisomerase VI subunit B [Pyrococcus abyssi GE5]
Length = 564
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 214/457 (46%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEEYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + K N W G I++ V + + + +
Sbjct: 132 VITSTGGEIVEAWVK--IDVQKNEGKIVKKLKHPNPKGWRGTRIELEVKDVKYVRSKQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A + V + F R ++ +P PVE K HP V + +
Sbjct: 190 YWYLKLTAIANPHAH-----IELVEPDGKLVVFPRSSEDIPEPPVEMKPHPKGVMVDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI----------GEMGPEFSPKMAVK----- 374
+ + + ++ +FL EF I + LI E E K+ K
Sbjct: 245 TMAHRSKRSSVRRFLVSEFSRISDKKVDELIKYITALRLIKSETNKEVKEKLYEKLVSGD 304
Query: 375 ----------------------------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
LT + I + F+ KF P L P GE
Sbjct: 305 VDSVLRAFGRKWKKELEKVAKIMDKSPEKLTWHEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G+ L P+ V + + +V+ G PF VE G++ GG+ QG I R+ANR+PL
Sbjct: 365 ENIKKGLTSILKPEFVTAVTRAPRVYAGGIPFQVEVGLAYGGQI--QGSEILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W YKI+ + V V++VS +P+ TGK+ I D EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYKIDSFDSAPLVVLVNVVSVHVPYTSTGKQSIA-DIDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ +L + K + Q +R++ L +
Sbjct: 481 HNEIRLALMDAARRLSFYLGGKFRRMYQVKRRKTLEK 517
>gi|15679025|ref|NP_276142.1| DNA topoisomerase VI subunit B [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122954|sp|O27088.1|TOP6B_METTH RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|2622108|gb|AAB85503.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 523
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 208/419 (49%), Gaps = 27/419 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y + +DNG G+P IP +F + +G+K+ Q+RG+ GLG ++ S+M+TG P+++
Sbjct: 74 YILRHQDNGPGIPEKYIPKVFCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTTGKPVKV 133
Query: 212 SSSMRSHNFISFCK--LDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG-NWTTYRSK 268
S + + K L +D+ +N + EK E + G I++ + +++
Sbjct: 134 ISGTMENGELKGVKMTLKMDVKKN--QGLILEKEEVEVDGTGVCIELHFKDVSYSLSEQG 191
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV---DL 325
Y+R+ + P+A+ +F + V F+R +DV+PP+P E HP V DL
Sbjct: 192 AYEYIRRTMIANPHARIVFN--DPTGNRYV---FNRASDVIPPMPKEVLPHPWGVTADDL 246
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+ + + G++L+ ++ E L G + PK +K ++QIV
Sbjct: 247 IFMAKHTDKRRFGSMLKSNLSRMSSMKIKELEELTG-IDLNKRPK-DMKWEEAEQIV--- 301
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVS 444
+ F++ KF P L P GE + G+ + L P+ AT + + + G FIVEAG++
Sbjct: 302 EAFKKMKFMSPPTSGLIPIGEEQIDKGMKEILQPEFTATVTRKPKTYRGGIAFIVEAGIA 361
Query: 445 VGGKDVK-----QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGV 498
GG + + I RFANR+PL F+ G +T +K ++W Y I ++ I +
Sbjct: 362 YGGNSGRLVGDQRKAEIMRFANRVPLTFDAGSCAITE-GVKSLDWKRYGIRDLENAPISI 420
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
FV++VST +P+ TGK+ + + EI ++ A +L + +K +E+ +R +
Sbjct: 421 FVNVVSTNVPYLSTGKQSVSPEP-EILGEIRQATMIVARKLHKYLRKKKAAKEEAQRAK 478
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ ++ +P+EFF +NK + GF +SL EL+ NS D+AE LP ++I ++ I
Sbjct: 10 DEGFQELTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEIKIDLKRI 69
Query: 80 GKSKF 84
GK +
Sbjct: 70 GKDHY 74
>gi|332157796|ref|YP_004423075.1| DNA topoisomerase VI subunit B [Pyrococcus sp. NA2]
gi|331033259|gb|AEC51071.1| DNA topoisomerase VI subunit B [Pyrococcus sp. NA2]
Length = 564
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/457 (26%), Positives = 219/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P + IP++FG++L+GTK Q+RG+ G+G A+++++++TG P
Sbjct: 72 YKIIVEDNGPGIPEEYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITTGKPTR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + K N W G I++ V + + + +
Sbjct: 132 VITSTGGDIVEAWVK--IDVQKNEGKIVKKIKHPNPKGWRGTRIEMEVKDVKYVRSKQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A + V I F R ++ +P PVE K HP V + +
Sbjct: 190 YWYLKLTAIANPHAH-----IELVEPDGKLIIFPRSSEEIPKPPVEMKPHPKGVMVDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGK--------------------------SLAERLIG-- 361
+ + K ++ +FL EF I + L E+L+
Sbjct: 245 TMAHRSKKSSVKRFLISEFSRISEKKIDELIKYITALRLIKKEENKEIKEKLYEKLVNGD 304
Query: 362 ------EMGPEFSPKM---------AVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
G ++ M + LT Q+ I + F+ KF P L P GE
Sbjct: 305 VDSVLKAFGRKWKKVMENVEKIMEKPPEKLTWQEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G++ L P+ V + + +V+ G PF VE G++ GG+ I R+ANR+PL
Sbjct: 365 ENIKKGLMGILKPEFVTAVTRAPKVYSGGIPFQVEVGLAYGGEISSS--EILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQ-TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W YKI+ + V V++VS +P+ TGK+ I D +EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYKIDSFDTSPLVVLVNVVSVHVPYTSTGKQSIA-DIEEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ +L + K + Q +R++ L +
Sbjct: 481 YNEIRLALMDAARKLAFYLGGKYRRLYQIKRRKTLEK 517
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP + + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGKIRSLTTIIHEAVTNSLDACEEAGILPYIRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKIIV 76
>gi|304315142|ref|YP_003850289.1| type II DNA topoisomerase VI, subunit B [Methanothermobacter
marburgensis str. Marburg]
gi|302588601|gb|ADL58976.1| type II DNA topoisomerase VI, subunit B [Methanothermobacter
marburgensis str. Marburg]
Length = 524
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 189/389 (48%), Gaps = 19/389 (4%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y + +DNG G+P IP +F + +G+K+ Q+RG+ GLG ++ S+M+TG PI++
Sbjct: 74 YILRHQDNGPGIPEKYIPKVFCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTTGKPIKV 133
Query: 212 SSSMRSHNFISFCK--LDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
S R + + K L +D+ +N + E+ E +D E+ + +++
Sbjct: 134 ISGTRENGELKGVKMTLKMDVKKNQGLILEKEEVEVEDTGVCIELHFK-DVSYSLSEQGA 192
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y+R+ + P+A+ +F + V F+R +DV+PP+P E HP V +
Sbjct: 193 YEYIRRTMIANPHAKIIFN--DPTGNRYV---FNRASDVIPPMPKEVLPHPWGVTADDLI 247
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+ T K L + + L G + + + K + ++ I + F+
Sbjct: 248 FMAKHTDKRRFRSMLTSNLSRMSSKKIKELEELTGIDLNKR--PKDMKWEEAESIVEAFK 305
Query: 390 QAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGK 448
+ KF P L P GE + G+ + L P+ AT + + + G F+VEAG++ GG
Sbjct: 306 KMKFMSPPTSGLIPIGEEQIEKGMREILQPEFTATVTRKPKTYRGGIAFVVEAGIAYGGN 365
Query: 449 DVK-----QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSI 502
+ + I RFANR+PL F+ G +T +K ++W Y I ++ + +FV+I
Sbjct: 366 SGRMVGDQRKAEIMRFANRVPLTFDAGSCAITE-GVKSLDWRRYGIRDLENTPLTIFVNI 424
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSA 531
VST +P+ TGK+ + + EI ++ A
Sbjct: 425 VSTNVPYLSTGKQSVAPE-PEILHEIRQA 452
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ ++ +P+EFF +NK + GF +SL EL+ NS D+AE LP ++I ++ I
Sbjct: 10 DEGFQELTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEIKIDLKRI 69
Query: 80 GKSKF 84
GK +
Sbjct: 70 GKDHY 74
>gi|325960093|ref|YP_004291559.1| DNA topoisomerase Vi, B subunit [Methanobacterium sp. AL-21]
gi|325331525|gb|ADZ10587.1| DNA topoisomerase VI, B subunit [Methanobacterium sp. AL-21]
Length = 538
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 206/427 (48%), Gaps = 31/427 (7%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + KDNG G+P + I ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 67 RVDKDHYILKHKDNGPGIPENYITKVYCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFC----KLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG- 260
G P + S + + I K+D+ ++ + L++K+ + D G I++ +
Sbjct: 127 GKPARVISGYKKGDEIKGVEMTFKMDVKTNKGL---ILNKKKVDVDS-TGVAIELQFKDV 182
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+++ Y+R+ + P+A+ F+ F R T+++PP+P E HP
Sbjct: 183 SYSLSEQGAFEYIRRSMIANPHAKVTFR-----DPTGQLFIFHRATEIIPPLPKEVLPHP 237
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERL--IGEMGPEFSPKMAVKSLTS 378
V + + T K L + + I ++ PK +K +
Sbjct: 238 KGVTADDLIFMAKHTDKRRFRSLLTSSLSRMSTKRVNEIEEITKIDLNKRPK-DMKWEEA 296
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PF 437
+QIV +LF Q F P L P G+ + GI + L+P+ VAT + + + G F
Sbjct: 297 EQIV---ELFAQMDFMAPPTSGLIPIGKEQIEKGIREILNPEFVATTTRKPKTYRGGVSF 353
Query: 438 IVEAGVSVGGK------DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
I+EAG++ GG D K+ I RFANR+PL F+QG +T A+K I+W Y I
Sbjct: 354 IIEAGIAYGGNSGRVVGDQKRS-EIMRFANRVPLSFDQGSCALTE-ALKSIDWKRYGIRD 411
Query: 492 TQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDR 550
++ I VFV+IVST +P+ TGK+ + + EI V+ A + L+ + K +
Sbjct: 412 IENTPITVFVNIVSTNVPYLSTGKQSVAPE-DEILHEVRQATMKIARSLQKYLNAKRAAK 470
Query: 551 EQQERKR 557
E++ R +
Sbjct: 471 EEEMRSK 477
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ + +EFF NK + GF +SL EL+ NS D+AE P + I ++ + K
Sbjct: 12 FKELTASEFFRRNKQMLGFSGKIRSLTMVFHELITNSFDAAEEAGIQPEISIDLKRVDKD 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|337283841|ref|YP_004623315.1| DNA topoisomerase VI subunit B [Pyrococcus yayanosii CH1]
gi|334899775|gb|AEH24043.1| DNA topoisomerase VI subunit B [Pyrococcus yayanosii CH1]
Length = 563
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 220/457 (48%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKIIVEDNGPGIPEKFIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + + N W G I++ V + + + +
Sbjct: 132 VITSTGGDIVEAWVK--IDVQKNEGKIVKKVRHPNPKGWRGTRIELEVKDVRYVRSKQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 190 YWYLKLTAIANPHAH-----IELIEPDGKLIIFPRSSEEIPKPPVEMKPHPKGVMTDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKS---------LAERLIGE-----MGPEFSPKMA--- 372
+ +T + T+ +FL EF I A RLI E + + ++A
Sbjct: 245 TMAHKTGRSTVRRFLVSEFSRISDKKVDELVKYIAALRLIKEEDDKAVRDQIYERLANGD 304
Query: 373 ----VKS----------------------LTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
+KS LT + I + F+ KF P L P GE
Sbjct: 305 VDGVLKSFGRKWRKVVREVEKIMEKPPEKLTWHEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G++ L P+ V + + +V+ G PF VE G++ GG+ G I R+ANR+PL
Sbjct: 365 ENIEKGLMGILKPEFVTAVTRAPRVYAGGIPFQVEVGLAYGGQIT--GPEILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W Y+I+ ++ + V V++VS +P+ TGK+ I D +EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYRIDSFENAPLVVMVNVVSVHVPYTSTGKQSIA-DVEEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L + + K + Q +R++ +
Sbjct: 481 YNEIRLAIMDAARKLATYLGGKYRRLYQVKRRKTFEK 517
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E LP + + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGKVRSLTTIVHEAVTNSLDACEEAGILPYIRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKIIV 76
>gi|410720326|ref|ZP_11359682.1| DNA topoisomerase VI, B subunit [Methanobacterium sp. Maddingley
MBC34]
gi|410601108|gb|EKQ55628.1| DNA topoisomerase VI, B subunit [Methanobacterium sp. Maddingley
MBC34]
Length = 521
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 201/424 (47%), Gaps = 25/424 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + D+G G+P I ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 67 RLDKDHYILRHTDSGPGIPEPFITKVYCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFC----KLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG- 260
G P ++ S + + + K+D+ ++ + + E++E + + G I++ +
Sbjct: 127 GKPAKVVSGYQEGDQLKGVEMTFKMDVKTNKGL----VLERKEVEVQSTGVSIELPFKDV 182
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+++ Y+R+ + P+ + F+ K + F R D++PP+P E HP
Sbjct: 183 SYSLSEQGAYEYIRRTMIANPHTKITFR--DPTGHKYI---FKRAADIIPPLPKEVLPHP 237
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQ 380
V + + T K L + + G G + + + K + ++
Sbjct: 238 KGVTADDLIFMAKHTDKRRFRSLLTSNLSRMSTKRVNEIQGITGIDLNKR--PKDMKWEE 295
Query: 381 IVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIV 439
+I + F + F P L P G+ + GI + L+P+ VAT + + F G FI+
Sbjct: 296 AEQIVETFAKMDFMAPPTSGLIPIGKEQIEKGIREILNPEFVATTTRKPKTFRGGVSFII 355
Query: 440 EAGVSVGGKDVK-----QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQD 494
EAG+S GG + + I RFANR+PL F+QG +T A+K ++W Y I +
Sbjct: 356 EAGISYGGDSGRMVGDQRKAEIMRFANRVPLAFDQGSCAITE-ALKSVDWKRYGIRDLDN 414
Query: 495 K-IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
I VFV+IVST +P+ TGK+ + + EI V+ A + ++ I K +E++
Sbjct: 415 APITVFVNIVSTNVPYLSTGKQSVAPEP-EILHEVRQATMKIARNMQKYIRAKKAAKEEE 473
Query: 554 ERKR 557
R +
Sbjct: 474 MRSK 477
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ + +EFF NK + GF +SL EL+ NSLD++E LP ++I ++ + K
Sbjct: 12 FKELTASEFFRRNKQMLGFSGKIRSLTMVFHELITNSLDASEEAGILPEIKIDLKRLDKD 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|18977951|ref|NP_579308.1| DNA topoisomerase VI subunit B [Pyrococcus furiosus DSM 3638]
gi|397652072|ref|YP_006492653.1| DNA topoisomerase VI subunit B [Pyrococcus furiosus COM1]
gi|23822280|sp|Q8U0K8.1|TOP6B_PYRFU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|18893723|gb|AAL81703.1| DNA topoisomerase VI, subunit b [Pyrococcus furiosus DSM 3638]
gi|393189663|gb|AFN04361.1| DNA topoisomerase VI subunit B [Pyrococcus furiosus COM1]
Length = 568
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/455 (27%), Positives = 212/455 (46%), Gaps = 60/455 (13%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P D IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEDYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S + + ID+ +N + K N RW G I++ ++ N RSK
Sbjct: 132 VITSTGDDEIVE-AWVKIDVQKNEGKIVKKIKHPNPKRWRGTRIELEVK-NVKYVRSKQG 189
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + V I F R ++ +P PVE K HP V +
Sbjct: 190 VYWYLKLTAIANPHAH-----IELVEPDGKLIVFPRSSEDIPEPPVEMKPHPKGVMTDDV 244
Query: 329 KGLIAETSKGTLLQFLQHEFV---------------------------NIGKSLAERL-- 359
+ + + T+ +FL EF N+ L ERL
Sbjct: 245 YTMAHRSKRSTVRRFLVSEFSRISDKKVDELVLYIAALRLINREVTDQNLKSQLIERLAN 304
Query: 360 --IGEMGPEFSPKM-------------AVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPA 404
+ ++ F K + LT + I + F+ KF P L P
Sbjct: 305 GEVEKVLKSFGRKWKKVVEEVEKIMEKPPEKLTWHEAEEIVEAFKLMKFLAPPTYGLRPI 364
Query: 405 GEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRI 463
GE N+ G+ L P+ V + +V+ G PF VE G++ GG+ I R+ANR+
Sbjct: 365 GEENIEKGLSSILRPEFVTAVTRPPKVYSGGIPFQVEVGIAYGGEITNS--EILRYANRV 422
Query: 464 PLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTK 522
PLLF+ G V+T +A++ I+W Y++ + + V V++VS +P+ TGK+ I
Sbjct: 423 PLLFDAGSCVIT-SAVRSIDWRRYRVESFDNAPLVVLVNVVSVHVPYTSTGKQSIA-SID 480
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
EI + ++ A+ + +L + + K + Q RK+
Sbjct: 481 EIYNEIRLALMEAARRLAAYLGGKYRRLYQIRRKK 515
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP V + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGSIRSLTTVIHEAVTNSLDACEEAGILPYVRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>gi|255514056|gb|EET90319.1| DNA topoisomerase VI, B subunit [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 541
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 201/402 (50%), Gaps = 37/402 (9%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTG 206
E Y V +DNG G+P + +L+GTK+ Q RG+ G+GA ++S+++TG
Sbjct: 71 EEDRYLVRVRDNGPGIPKKFVGKALATILAGTKFHRYMQQRGQQGIGAAGCTMFSQITTG 130
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P+ + SS + S CK+ ID N P V + N + G E+Q G + + +
Sbjct: 131 KPVIVRSSTGDDDGYS-CKVYIDTMTNKPVV---TEVANAEVPRGLEVQ----GEFGSVK 182
Query: 267 SK-----ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP- 320
+ + Y+++ A+ P+AQ +F+ + N+ +R TD++P PV K HP
Sbjct: 183 YENSDHGVYEYLKRTALANPHAQI--EFIDPNGKTNLLMR---ATDIIPKRPVPVKPHPL 237
Query: 321 -SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGK-SLAERLIGEMGPEFSPKMAVKSLTS 378
SV+ +L I+E+ K + V+ GK +++G E +P++ +K +
Sbjct: 238 GVSVNDILELAQISESRKVSAFLMESLSRVSQGKIDEIRKIVGAEALEMAPRL-LKWDDA 296
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PF 437
+ +V+ F+ K+ P +S GE ++ + L+P+ + +F G PF
Sbjct: 297 KALVK---AFKAIKWIAPDSSSISAIGEQQVKTALKNILNPEYMYVVERKPGIFAGGVPF 353
Query: 438 IVEAGVSVGG-------KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKIN 490
+VEA ++ GG +D +G NI RFANR+PLLF+ GG +T A + I W Y I+
Sbjct: 354 VVEAALAYGGNSGKKVAEDAYEG-NILRFANRVPLLFDSGGCAIT-VAARSIQWKRYGID 411
Query: 491 QTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 532
+ VFV++ S IP+ G GKE I + EI +K A+
Sbjct: 412 LDTQPVSVFVNVSSVHIPYSGVGKESIAQE-DEIIEEIKLAL 452
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK + G+ SL T V E V NSLD+ E LP + + + + +
Sbjct: 14 FKEHSIAEFFKKNKQMLGYSGLVHSLVTVVHEYVTNSLDACEEAGILPDISVEVRPVEED 73
Query: 83 KF 84
++
Sbjct: 74 RY 75
>gi|408381804|ref|ZP_11179352.1| DNA topoisomerase VI subunit B [Methanobacterium formicicum DSM
3637]
gi|407815735|gb|EKF86305.1| DNA topoisomerase VI subunit B [Methanobacterium formicicum DSM
3637]
Length = 521
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 134/547 (24%), Positives = 231/547 (42%), Gaps = 93/547 (17%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ + +EFF NK + GF +SL EL+ NSLD++E LP ++I
Sbjct: 12 FKELTASEFFRRNKQMLGFSGKIRSLTMVFHELITNSLDASEEAGILPEIKI-------- 63
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
D +R+D Y T+ G + EP TK
Sbjct: 64 ---------DLKRLDKDHYILRHTDS----------------------GPGIPEPYITK- 91
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
V C MF G+K+ Q+RG+ GLG ++ S+
Sbjct: 92 -----------VYC-------------TMFA----GSKFRNIQSRGQQGLGCSGCVLLSQ 123
Query: 203 MSTGLPIEISSSMRSHNFISFC----KLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI 258
M+TG P ++ S + + K+D+ +R + + E+++ + + G I++
Sbjct: 124 MTTGKPAKVVSGYYEGDKLKGVEMTFKMDVKTNRGL----VLERKDVEVQNTGVSIELPF 179
Query: 259 EG-NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETK 317
+ +++ Y+R+ + P+ + F+ K + F R D++PP+P E
Sbjct: 180 KDVSYSLSEQGAYEYIRRTMIANPHTKITFR--DPTGHKYI---FKRAADIIPPLPKEVL 234
Query: 318 HHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT 377
HP V + + T K L + + G + + + K +
Sbjct: 235 PHPKGVTADDLIFMAKHTDKRRFRSLLTSNLSRMSTKRVNDIQEITGIDLNKR--PKDMK 292
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-P 436
++ +I + F + F P L P G+ + GI + L+P+ VAT + + F G
Sbjct: 293 WEEAEQIVETFAKMDFMAPPTSGLIPIGKEQIEKGIREILNPEFVATTTRKPKTFRGGVS 352
Query: 437 FIVEAGVSVGGKDVK-----QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
FI+EAG+S GG + + I RFANR+PL F+QG +T A+K ++W Y I
Sbjct: 353 FIIEAGISYGGDSGRMVGDQRKAEIMRFANRVPLAFDQGSCAITE-ALKSVDWKRYGIRD 411
Query: 492 TQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDR 550
+ I VFV+I+ST +P+ TGK+ + + EI V+ A + ++ I K +
Sbjct: 412 LDNAPITVFVNIISTNVPYLSTGKQSVAPEP-EILHEVRQATMKIARSMQKYIRAKKAAK 470
Query: 551 EQQERKR 557
E+ R +
Sbjct: 471 EEAMRSK 477
>gi|288561121|ref|YP_003424607.1| DNA topoisomerase VI subunit B [Methanobrevibacter ruminantium M1]
gi|288543831|gb|ADC47715.1| DNA topoisomerase VI subunit B [Methanobrevibacter ruminantium M1]
Length = 599
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 200/417 (47%), Gaps = 23/417 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T DNG G+P + + ++ ++ +G+K+ Q+RG+ GLG ++ S+M+TG +
Sbjct: 73 YVLTHSDNGPGIPEEFVMKVYCQMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTTGESTHV 132
Query: 212 SSSMRSHNFISFCKLD--IDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYRSK 268
+S + + K++ +D+ +N L +K E G I++ E +++
Sbjct: 133 TSGWMENGELKGVKMEFKMDVKQN--KGDLIKKSEFTPTGTGVCIKLHFKEVSYSLAEQG 190
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
Y+R+ + P+A+ F+ S A K + F R +++P +P E HP V I
Sbjct: 191 AFEYIRRTMIANPHAKITFRDPS--AHKYI---FKRAAEIVPVLPQEVLPHPKGVTADDI 245
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
+ T K L + L G + K K++ + +I + F
Sbjct: 246 ITIAKFTDKRNFKSMLTSSLSRMSSKKVSELQELTGIDM--KKRPKNMEWAEAEKIVEAF 303
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGG 447
+ KF P L P GE + G+ L P+ + T + S ++G FIVEAG++ GG
Sbjct: 304 GKMKFMAPPTSGLIPIGEEQIEKGMKLILKPEFITTITRSPVTYKGGVAFIVEAGIAYGG 363
Query: 448 KDVKQGLN------IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFV 500
D + +N I RFANR+PL F+ G +T A++ I+W Y + + + +FV
Sbjct: 364 -DAGRIVNEQRKSEILRFANRVPLTFDAGSCAITE-ALRSIDWRRYGLRDLDNTPLTLFV 421
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+I+ST++P+ TGK+ I + EI ++ A + +L+ I K ++E+ R +
Sbjct: 422 NIISTQVPYLSTGKQSIAPEP-EIVHEIRQATMKIARRLQKHIRSKKAEKEKAMRSK 477
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKF 84
+P+EFF +NK + GF +SL EL+ NS D+AE LP + I ++ +GK +
Sbjct: 16 TPSEFFRKNKQMLGFSGKIRSLTIVFHELITNSFDAAEEAGILPEISIKLDRLGKDHY 73
>gi|359417696|ref|ZP_09209780.1| DNA topoisomerase VI subunit B, partial [Candidatus Haloredivivus
sp. G17]
gi|358031945|gb|EHK00765.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 320
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 150/289 (51%), Gaps = 14/289 (4%)
Query: 277 AVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETS 336
A++ PYA+ + + + F R + +P E K HP V+L ++ +I +S
Sbjct: 2 AIMNPYARVVLR-----EPDGNKVEFPRVSRELPKKSKEIKPHPHGVELGVMMRMIENSS 56
Query: 337 KGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDP 396
T+ FLQ+EF +G++ AE + E + +L +I + + + K P
Sbjct: 57 ARTITSFLQNEFTRVGRTSAEEICDEA--DMDTGRRPNTLEKDEIETLLKAAQNVKLQSP 114
Query: 397 SGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LN 455
CLSP GE + G+ KEL+P+ + S V++G+PF +E G++ GG +G +
Sbjct: 115 PTDCLSPIGEDLVLKGLKKELNPEFSTAITRSPTVYKGNPFQIEVGLAWGGDIEDEGSFD 174
Query: 456 IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT----QDKIGVFVSIVSTKIPFKG 511
RFAN++PLL+++ V T+ A++ ++W+ Y I+QT Q + + V I S +PF
Sbjct: 175 ELRFANKVPLLYKKSSCVTTK-AIEEVSWNRYNISQTGNRPQGPLYILVHIASVWVPFTS 233
Query: 512 TGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
GKE + + I +K A+Q+ +L I RK + Q+++KR L+
Sbjct: 234 EGKEAVA-NYDPIRKEMKLALQEAGRKLGRYIGRKERKAIQEKKKRQLT 281
>gi|283778750|ref|YP_003369505.1| DNA topoisomerase VI subunit B [Pirellula staleyi DSM 6068]
gi|283437203|gb|ADB15645.1| DNA topoisomerase VI, B subunit [Pirellula staleyi DSM 6068]
Length = 670
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 156/335 (46%), Gaps = 38/335 (11%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+VT +DNG G+ IP +FG++L G+K+ L+ +RG+ G+G A ++ ++TG P+
Sbjct: 88 YQVTVQDNGPGIVKKQIPLIFGKLLYGSKFHRLRMSRGQQGIGISAAGMYGMLTTGKPVR 147
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD-------------RWH------- 250
I S + + ++ ID RN P + ++ K E +D W
Sbjct: 148 IVSKLSPKKPAHYFEIQIDTKRNHPEI-INGKGEGEDIETDATTLDKRGICWQTMYPAEG 206
Query: 251 ---------GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIR 301
G + + +EG + R + Y+ Q A+ P+ + +I
Sbjct: 207 EKPATEVKSGTSVTIELEGKYIRGRGSVDEYLEQTAIANPHVTIHY-----FDPDGGSIS 261
Query: 302 FSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
+SR T +PP P E K HP V+L + ++ +T GT+ QFL F + S+A+ +
Sbjct: 262 YSRSTTELPPEPKEIKPHPYGVELGRLVTMLKDTPAGTISQFLTDSFSRVSSSVAKEICD 321
Query: 362 EMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDM 421
+ S + K + Q++ ++Q + K P+ C++P GE + G+ + +
Sbjct: 322 TA--KISTRANCKRIGRQEVDALYQAIQATKISAPATDCITPIGEPLILKGLHHVVPGEF 379
Query: 422 VATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
A + V+ G+PF +E G++ GG Q +++
Sbjct: 380 YAAATRPPAVYRGNPFQIEVGLAFGGVSAAQKVSL 414
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 11 KSKSPKTPNESAL------KQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDS 62
+S +P+ P A KQ+ S +EFFA+N+++ GFDNP K+L TTV+E V+NSLD+
Sbjct: 7 ESTTPEAPQRRATAESMATKQRDISVSEFFAKNRHLLGFDNPRKALLTTVKEAVDNSLDA 66
Query: 63 AESISELPVVEITIEEIGKSKFNSMI 88
E P + +T+ G +++ +
Sbjct: 67 CEEAGITPEIWVTMASTGNNRYQVTV 92
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 64/239 (26%)
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
V L + L++E+ TL QFL F +G +ER++ E +F + + LT +I
Sbjct: 412 VSLEALTELLSESDARTLRQFLMSTFDGVGSDASERILSEA--QFGSRQSPSKLTKDEIA 469
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAG 442
+H R NL G
Sbjct: 470 TLHAAMRNV----------------NLSEG------------------------------ 483
Query: 443 VSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT-----QDKIG 497
Q + + R+ANR+PL F+ +T++ + NW SY ++Q+ Q +
Sbjct: 484 ---------QTMQVLRYANRVPLQFQHAACAITQSVIA-TNWRSYGVSQSRGQLPQGPLT 533
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ V + S +PF KE I EI ++ +Q +L + R+ + +++ ER+
Sbjct: 534 IMVHMASVWVPFTSESKEAIA-GYPEIQKELRLGLQAVGRKLGIYLNRRNKVKQEGERR 591
>gi|20094357|ref|NP_614204.1| DNA topoisomerase VI subunit B [Methanopyrus kandleri AV19]
gi|19887419|gb|AAM02134.1| DNA topoisomerase VI, subunit B [Methanopyrus kandleri AV19]
Length = 475
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 192/400 (48%), Gaps = 33/400 (8%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK----YGLKQTRGKFGLGAKMALIWS 201
R E + YRV DNG G+P + +P +FG+ L+G K YG+ Q+ G+ G+GA +++
Sbjct: 61 REEENVYRVRVIDNGPGIPPERVPKVFGKFLAGDKFDPVYGI-QSMGQQGIGAAGVALYA 119
Query: 202 KMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EG 260
++TG P+ + +S F ++ D N P V EKR R G ++V I +
Sbjct: 120 LITTGEPVRVLTSTDGRTAHYF-EVKPDPSTNEPVVVRREKRPASRR--GTTVEVTIGDA 176
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+ + R Y+R++ + P+A+ + + N + + + +P P K HP
Sbjct: 177 VYESGRRGPREYLRRLHAVNPHARISLRD----PDGNAHV-WEPLVEELPDPPRVLKPHP 231
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKS----LAERLIGEMGPEFSPKMAVKSL 376
++D + + TS+ T+ L E ++ L ERL G + E P K L
Sbjct: 232 HALDAHKLLRIAERTSRRTVRTMLVGELCRFSEARVEELRERLAGRVDLEKDP----KEL 287
Query: 377 TSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHP 436
T ++ I + + F P +SP GE L+ + E +V+ S V +
Sbjct: 288 TREEAELIVKALHEMDFMRPPSDVVSPVGESALKAALKSE-GARLVSAVSRRPLVLRDNV 346
Query: 437 FIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKI 496
VE V G ++G +++RFANR PL+F GG +T+ ++ +++ Y + +D++
Sbjct: 347 IQVEVAVGYG----EEG-DLWRFANRAPLMFRAGGCSITK-GVEEVDFGRYGLE--EDRL 398
Query: 497 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCC 536
+ V++ S +PF G K+ IG + E VK A+Q+ C
Sbjct: 399 LILVNVNSPFVPFSGPAKQEIGSEYVE--EEVKRAVQRAC 436
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
++ SPAEFF N+ + GFD P KS+ TV ELV NS+D+ P V + I
Sbjct: 7 RESSPAEFFERNREMLGFDGPIKSMVMTVHELVTNSMDACHLNRIRPDVRVVI 59
>gi|386876564|ref|ZP_10118669.1| putative DNA topoisomerase VI, B subunit, partial [Candidatus
Nitrosopumilus salaria BD31]
gi|386805635|gb|EIJ65149.1| putative DNA topoisomerase VI, B subunit, partial [Candidatus
Nitrosopumilus salaria BD31]
Length = 263
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 66/265 (24%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VEN+LD+ + LP V +
Sbjct: 8 FNQISPSEFFYSNRDLAGFSNPTRSLYTAVREFVENALDACDQKGILPDVHL-------- 59
Query: 83 KFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKG 142
+I VD E+ D K
Sbjct: 60 ----IIKAVDPEKSDPKP------------------------------------------ 73
Query: 143 AKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202
Y +T KDNG G+ IP FG VL G+K+GLKQ RG FGLGA MA+++ +
Sbjct: 74 ---------YILTVKDNGPGIDASHIPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQ 124
Query: 203 MSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW 262
++T P+ + SS+ F +L +DI N P + H +E G + + +EG++
Sbjct: 125 ITTNKPVLVKSSVDGKTQDEF-ELLLDIQNNKPVIVKHTTKEVSKP--GLSVSICLEGDY 181
Query: 263 TTYRSKILHYMRQMAVITPYAQFLF 287
+ +KI Y+ + ++ITPYA F
Sbjct: 182 SKAGNKIRDYVYETSLITPYASISF 206
>gi|148643015|ref|YP_001273528.1| DNA topoisomerase VI subunit B [Methanobrevibacter smithii ATCC
35061]
gi|148552032|gb|ABQ87160.1| type II DNA topoisomerase VI, subunit B [Methanobrevibacter smithii
ATCC 35061]
Length = 571
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 190/409 (46%), Gaps = 23/409 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + DNG G+P D + ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 72 RIDKEHYILRHSDNGPGIPEDFVMQVYCSMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 131
Query: 206 GLPIEISSSMRSHNFISFCKL--DIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG-NW 262
G P + S + + + K+ +D+ +N L E+ + G I++ + ++
Sbjct: 132 GEPARVISCYQEGDDLKGVKMKFKMDVKKN--KGMLMEREDFPAEHTGVCIELQFKDVSY 189
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
+ Y+R+ + P+A+ F+ K + F R +++P +P E HP
Sbjct: 190 SMAEQGAFEYIRRTMIGNPHAKITFR--DPTGHKYI---FKRAANIVPILPKEVLPHPKG 244
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
V I + T K L + + G + + + K +T +
Sbjct: 245 VSADDILFMAKHTDKRRYKSMLTSSLSRMSNKRVNEIEELTGIDMNKR--PKDMTWAEAE 302
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEA 441
I F++ KF P L P G + G+ + L P+ +AT + + G FI+EA
Sbjct: 303 AIVNCFKKMKFMAPPSNGLIPIGSEQIEKGMKQILKPEFIATLTRKPVTYGGGVSFIIEA 362
Query: 442 GVSVGGKDVKQGLN------IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
G++ GG D + +N I RFANR+PL F+QG +T A+K I+W Y I +
Sbjct: 363 GIAYGG-DSGRVVNEQRKSEIMRFANRVPLTFDQGSCAITE-ALKSIDWKRYGIKDFDNS 420
Query: 496 -IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
+ +FV+I+ST++P+ TGK+ + + EI ++ A +L+ +
Sbjct: 421 PVTLFVNIISTQVPYLSTGKQSVSPEP-EIVHEIRQATMTLARKLQKHL 468
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
+Q +P+EFF +NK + GF +SL EL+ NS D+AE LP + I ++ I K
Sbjct: 17 FQQLTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEINIELKRIDKE 76
Query: 83 KF 84
+
Sbjct: 77 HY 78
>gi|261350189|ref|ZP_05975606.1| DNA topoisomerase VI, B subunit [Methanobrevibacter smithii DSM
2374]
gi|288860975|gb|EFC93273.1| DNA topoisomerase VI, B subunit [Methanobrevibacter smithii DSM
2374]
Length = 566
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 190/409 (46%), Gaps = 23/409 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + DNG G+P D + ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 67 RIDKEHYILRHSDNGPGIPEDFVMQVYCSMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFCKL--DIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG-NW 262
G P + S + + + K+ +D+ +N L E+ + G I++ + ++
Sbjct: 127 GEPARVISCYQEGDDLKGVKMKFKMDVKKN--KGMLMEREDFPAEHTGVCIELQFKDVSY 184
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
+ Y+R+ + P+A+ F+ K + F R +++P +P E HP
Sbjct: 185 SMAEQGAFEYIRRTMIGNPHAKITFR--DPTGHKYI---FKRAANIVPILPKEVLPHPKG 239
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
V I + T K L + + G + + + K +T +
Sbjct: 240 VSADDILFMAKHTDKRRYKSMLTSSLSRMSNKRVNEIEELTGIDMNKR--PKDMTWAEAE 297
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEA 441
I F++ KF P L P G + G+ + L P+ +AT + + G FI+EA
Sbjct: 298 AIVNCFKKMKFMAPPSNGLIPIGSEQIEKGMKQILKPEFIATLTRKPVTYGGGVSFIIEA 357
Query: 442 GVSVGGKDVKQGLN------IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
G++ GG D + +N I RFANR+PL F+QG +T A+K I+W Y I +
Sbjct: 358 GIAYGG-DSGRVVNEQRKSEIMRFANRVPLTFDQGSCAITE-ALKSIDWKRYGIKDFDNS 415
Query: 496 -IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
+ +FV+I+ST++P+ TGK+ + + EI ++ A +L+ +
Sbjct: 416 PVTLFVNIISTQVPYLSTGKQSVSPEP-EIVHEIRQATMTLARKLQKHL 463
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
+Q +P+EFF +NK + GF +SL EL+ NS D+AE LP + I ++ I K
Sbjct: 12 FQQLTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEINIELKRIDKE 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|222445252|ref|ZP_03607767.1| hypothetical protein METSMIALI_00880 [Methanobrevibacter smithii
DSM 2375]
gi|222434817|gb|EEE41982.1| DNA topoisomerase VI, B subunit [Methanobrevibacter smithii DSM
2375]
Length = 566
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 193/414 (46%), Gaps = 27/414 (6%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
R + Y + DNG G+P D + ++ + +G+K+ Q+RG+ GLG ++ S+M+T
Sbjct: 67 RIDKEHYILRHSDNGPGIPEDFVMQVYCSMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTT 126
Query: 206 GLPIEISSSMRSHNFISFCKL--DIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG-NW 262
G P + S + + + K+ +D+ +N L E+ + G I++ + ++
Sbjct: 127 GEPARVISCYQEGDDLKGVKMKFKMDVKKN--KGMLMEREDFPAEHTGVCIELQFKDVSY 184
Query: 263 TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSS 322
+ Y+R+ + P+A+ F+ K + F R +++P +P E HP
Sbjct: 185 SMAEQGAFEYIRRTMIGNPHAKITFR--DPTGHKYI---FKRAANIVPILPKEVLPHPKG 239
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
V I + T K L + + G + + + K +T +
Sbjct: 240 VSADDILFMAKHTDKRRYKSMLTSSLSRMSNKRVNEIEELTGIDMNKR--PKDMTWAEAE 297
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEA 441
I F++ KF P L P G + G+ + L P+ +AT + + G FI+EA
Sbjct: 298 AIVNCFKKMKFMAPPSNGLIPIGSEQIEKGMKQILKPEFIATLTRKPVTYGGGVSFIIEA 357
Query: 442 GVSVGGKDVKQGLN------IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
G++ GG D + +N I RFANR+PL F+QG +T A+K I+W Y I +
Sbjct: 358 GIAYGG-DSGRVVNEQRKSEIMRFANRVPLTFDQGSCAITE-ALKSIDWKRYGIKDFDNS 415
Query: 496 -IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQ 548
+ +FV+I+ST++P+ TGK+ + + + + I+Q + L K+ + ++
Sbjct: 416 PVTLFVNIISTQVPYLSTGKQSVSPEPE-----IVHEIRQSTMTLARKLQKHLR 464
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
+Q +P+EFF +NK + GF +SL EL+ NS D+AE LP + I ++ I K
Sbjct: 12 FQQLTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEINIELKRIDKE 71
Query: 83 KF 84
+
Sbjct: 72 HY 73
>gi|448361960|ref|ZP_21550573.1| DNA topoisomerase VI subunit B [Natrialba asiatica DSM 12278]
gi|445649640|gb|ELZ02577.1| DNA topoisomerase VI subunit B [Natrialba asiatica DSM 12278]
Length = 821
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 120/215 (55%), Gaps = 9/215 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGASDAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y++ AV+ P+A+ E+ E + +F R TD +P E + HP V+L
Sbjct: 196 QQLHDYIQHTAVVNPHARL------ELREPSSHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
+ ++A T T+ FLQ EF +GK AE +IG
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVIG 284
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + G+ KE D A+ + A+V G PFIVEAG++ G +G
Sbjct: 523 PPTRCLSPISADLIEAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGDDLPAEGSA 582
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 583 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 641
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 642 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 686
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEEG 79
>gi|42524272|ref|NP_969652.1| DNA topoisomerase VI subunit B [Bdellovibrio bacteriovorus HD100]
gi|39576480|emb|CAE80645.1| type II DNA topoisomerase VI, subunit B [Bdellovibrio bacteriovorus
HD100]
Length = 589
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 195/425 (45%), Gaps = 20/425 (4%)
Query: 142 GAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ-TRGKFGLGAKMALIW 200
GA R+ +DNG G+ +D+ ++G L+ +K+G Q +RG+ G+G A W
Sbjct: 61 GAGSTKNTDLIRIVVEDNGPGIEGEDLAKVYGEYLASSKFGRGQCSRGQQGIGISAATTW 120
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
++M+ + + S + ++D+DI N V +++ + DR HG ++ V++G
Sbjct: 121 AQMTNARGVSVVSKTKKMRKAISAQVDVDIKSNT-GVLKNKETLDWDREHGTRVEFVLDG 179
Query: 261 N-WTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHH 319
+L Y+ ++ P+ +K A+ R S TDV P VP + H
Sbjct: 180 RIQLNGDGGLLTYIEGTILVNPHMTITYKLTD--ADFVTVTRVS--TDV-PKVPEASLPH 234
Query: 320 PSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
P + L K TL +FL+ F I + + P+ + + +L+ +
Sbjct: 235 PHTFKLGEFITHSTLFGKTTLSKFLKTGFSRISDQSISDFVKKGLPKGLLEKPLTALSEE 294
Query: 380 QIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIV 439
++ Q + PS + GE L I + D A + + + P +V
Sbjct: 295 DFKKVFQAVQNTDLMAPSTKSVLTVGEEALSKSITRLGEIDFFAVVTRKPTICDFKPVVV 354
Query: 440 EAGVSVGGKDVKQG----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
E ++ KD Q + + RFANR+PL F++ G +T A++ +NW +Y + Q +D
Sbjct: 355 EVALA-RFKDRNQQNDSPVTLLRFANRVPLQFDKSGCAITW-AIESVNWKAYGLGQPKDS 412
Query: 496 IGV-----FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDR 550
+ + VSIVS I FK KE I D ++E+ + ++ A+ Q +L I +++++
Sbjct: 413 LPLGPYIFAVSIVSPFIKFKNASKETI-DASEELVAEIRLALIQAGQKLSRHIKKEVKEA 471
Query: 551 EQQER 555
+ + +
Sbjct: 472 DLERK 476
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP--VVEITIEE 78
S + + S AE+FA+N GF +P K++ TT++E V+NSLD+ ES LP +VEI+
Sbjct: 2 SKITKSSTAEYFAKNLQQVGFSSPLKAVLTTLKEAVDNSLDACESAGILPDLLVEISKVG 61
Query: 79 IGKSKFNSMIGLV 91
G +K +I +V
Sbjct: 62 AGSTKNTDLIRIV 74
>gi|448323108|ref|ZP_21512572.1| DNA topoisomerase VI subunit B [Natronococcus amylolyticus DSM
10524]
gi|445600294|gb|ELY54307.1| DNA topoisomerase VI subunit B [Natronococcus amylolyticus DSM
10524]
Length = 817
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYKLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +EGN R ++
Sbjct: 141 KITSRTQGSSEAEYFELIVDTDENEPEISVEETT-SWDRPHGTRIELEMEGNMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N +F R TD +P E + HP V+L +
Sbjct: 199 HDYVKHTAVVNPHARL------ELKEPNAHFKFERGTDQLPEETEEIRPHPHGVELGTVI 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+++ T T+ FLQ EF +GK A+ +I
Sbjct: 253 KMLSATDSQTISGFLQEEFTRVGKKTADSVI 283
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + +R G+ KE + A + A+V G PF+VEAG++ GG+ +G
Sbjct: 518 PPTRCLSPITDDLIRAGLEKEFDAEFYAAATRDAEVHSGDPFVVEAGIAYGGEIPAEGSA 577
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 578 DVLRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 636
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + I ++ AI++ +LKS + K + E++ +K+N+
Sbjct: 637 FTSESKDAVA-NVPAIEDEIELAIREAARELKS-FLSKRRSMEKRRKKQNV 685
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQESG 79
>gi|289580320|ref|YP_003478786.1| DNA topoisomerase VI subunit beta [Natrialba magadii ATCC 43099]
gi|448283991|ref|ZP_21475256.1| DNA topoisomerase VI subunit B [Natrialba magadii ATCC 43099]
gi|289529873|gb|ADD04224.1| DNA topoisomerase VI, B subunit [Natrialba magadii ATCC 43099]
gi|445572086|gb|ELY26628.1| DNA topoisomerase VI subunit B [Natrialba magadii ATCC 43099]
Length = 824
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGTDEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ +Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L
Sbjct: 196 QQLHNYIKHTAVVNPHARL------ELREPKAHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++A T T+ FLQ EF +GK AE +I
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVI 283
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + ++ G+ KE + A+ + A+V G PF+VEAG++ GG+ +G
Sbjct: 526 PPTRCLSPISDDLIQAGLEKEFDAEFYASATRDAEVHGGDPFVVEAGIAYGGELPAEGSA 585
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 586 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 644
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 645 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 689
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQEEG 79
>gi|448352989|ref|ZP_21541767.1| DNA topoisomerase VI subunit B [Natrialba hulunbeirensis JCM 10989]
gi|445641056|gb|ELY94139.1| DNA topoisomerase VI subunit B [Natrialba hulunbeirensis JCM 10989]
Length = 824
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGTDEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ +Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L
Sbjct: 196 QQLHNYIKHTAVVNPHARL------ELREPKAHFKFERATDQLPKETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++A T T+ FLQ EF +GK AE +I
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVI 283
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + ++ G+ KE + ++ + A+V G PF+VEAG++ GG+ +G
Sbjct: 526 PPTRCLSPISDDLIQAGLEKEFDAEFYSSATRDAEVHGGDPFVVEAGIAYGGELPAEGSA 585
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 586 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 644
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 645 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 689
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQEEG 79
>gi|448357875|ref|ZP_21546570.1| DNA topoisomerase VI subunit B [Natrialba chahannaoensis JCM 10990]
gi|445648183|gb|ELZ01145.1| DNA topoisomerase VI subunit B [Natrialba chahannaoensis JCM 10990]
Length = 824
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGTSEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ +Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L
Sbjct: 196 QQLHNYIKHTAVVNPHARL------ELREPKAHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++A T T+ FLQ EF +GK AE +I
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVI 283
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + ++ G+ KE + ++ + A+V G PF+VEAG++ GG+ +G
Sbjct: 526 PPTRCLSPISDDLIQAGLEKEFDAEFYSSATRDAEVHGGDPFVVEAGIAYGGELPAEGSA 585
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 586 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 644
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 645 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 689
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQEEG 79
>gi|426404782|ref|YP_007023753.1| DNA topoisomerase VI subunit B [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425861450|gb|AFY02486.1| DNA topoisomerase VI subunit B [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 574
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/425 (24%), Positives = 196/425 (46%), Gaps = 20/425 (4%)
Query: 142 GAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ-TRGKFGLGAKMALIW 200
GA R+ +DNG G+ +D+ ++G L+ +K+G Q +RG+ G+G A W
Sbjct: 42 GAGSTKNTDLIRIVVEDNGPGIEGEDLAKVYGEYLASSKFGRGQCSRGQQGIGISAATTW 101
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
++M+ + + S + ++D+DI N V +++ + DR HG ++ V++G
Sbjct: 102 AQMTNARGVSVVSKTKKMRKAISAQVDVDIKSNT-GVLKNKETLDWDREHGTRVEFVLDG 160
Query: 261 N-WTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHH 319
+L Y+ ++ P+ +K VT+ +R + +P VP + H
Sbjct: 161 RIQLNGDGGLLTYIEGTILVNPHMTITYKLTD---ADFVTV--TRVSTEVPRVPEASLPH 215
Query: 320 PSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ 379
P + L K TL +FL+ F I + + P+ + ++ +L+ +
Sbjct: 216 PHTFKLGEFITHSTLFGKTTLSKFLKTGFSRISDQSISDFVKKGLPKGLLEKSLTALSEE 275
Query: 380 QIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIV 439
++ Q + PS + GE L I + D A + + + P +V
Sbjct: 276 DFKKVFQAVQNTDLMAPSTKSVLTVGEEALSKSITRLGEIDFFAVVTRKPTICDFKPVVV 335
Query: 440 EAGVSVGGKDVKQG----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK 495
E ++ KD Q + + RFANR+PL F++ G +T A++ +NW +Y + Q +D
Sbjct: 336 EVALA-RFKDRNQQNDSPVTLLRFANRVPLQFDKSGCAITW-AIESVNWKAYGLGQPKDS 393
Query: 496 IGV-----FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDR 550
+ + VSIVS I FK KE I D ++E+ + ++ A+ Q +L I +++++
Sbjct: 394 LPLGPYIFAVSIVSPFIKFKNASKETI-DASEELVAEIRLALIQAGQKLSRHIKKEVKEA 452
Query: 551 EQQER 555
+ + +
Sbjct: 453 DLERK 457
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 40 GFDNPGKSLYTTVRELVENSLDSAESISELP--VVEITIEEIGKSKFNSMIGLV 91
GF +P K++ TT++E V+NSLD+ ES LP +VEI+ G +K +I +V
Sbjct: 2 GFSSPLKAVLTTLKESVDNSLDACESAGILPDLLVEISKVGAGSTKNTDLIRIV 55
>gi|448348508|ref|ZP_21537357.1| DNA topoisomerase VI subunit B [Natrialba taiwanensis DSM 12281]
gi|445642875|gb|ELY95937.1| DNA topoisomerase VI subunit B [Natrialba taiwanensis DSM 12281]
Length = 821
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 120/215 (55%), Gaps = 9/215 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
+ +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 DGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGASDAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y++ AV+ P+A+ E+ E + +F R TD +P E + HP V+L
Sbjct: 196 QQLHDYIQHTAVVNPHARL------ELREPSSHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
+ ++A T T+ FLQ EF +GK AE +IG
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVIG 284
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CLSP + G+ KE D A+ + A+V G PFIVEAG++ G +G
Sbjct: 523 PPTRCLSPISADLIEAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGDDLPAEGTA 582
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 583 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 641
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 642 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 686
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEDG 79
>gi|448302923|ref|ZP_21492873.1| DNA topoisomerase VI subunit B [Natronorubrum sulfidifaciens JCM
14089]
gi|445593930|gb|ELY48097.1| DNA topoisomerase VI subunit B [Natronorubrum sulfidifaciens JCM
14089]
Length = 820
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 120/214 (56%), Gaps = 9/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKDSLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGASEAQYFELIVDTDENEPEISVEETT-SWDRPHGTRIELEMEANMRA-RGQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPKNHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
+++ T T+ FLQ EF +GK AE +I E
Sbjct: 253 KMLSATDSQTVSGFLQEEFTRVGKKTAESIIDEF 286
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R A P CLSP E + G+ KE D A+ + A V G PFIVEAG++ GG
Sbjct: 514 MRAADIMAPPTRCLSPITEELITAGLKKEFDADFYASATRDADVHGGDPFIVEAGIAYGG 573
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G ++ RFANR+PL++++G T +K I W +Y ++Q + +
Sbjct: 574 EIQAEGSADVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMI 632
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ + + I ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 633 HVASTNVPFTSESKDAVA-NVPAIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 689
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE P + + IEE+G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGIAPDIYVEIEEVG 79
>gi|448309741|ref|ZP_21499596.1| DNA topoisomerase VI subunit B [Natronorubrum bangense JCM 10635]
gi|445589407|gb|ELY43640.1| DNA topoisomerase VI subunit B [Natronorubrum bangense JCM 10635]
Length = 820
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 120/214 (56%), Gaps = 9/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKDSLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGASEAQYFELIVDTDANEPEISVEETT-SWDRPHGTRIELEMEANMRA-RGQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPKNHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
+++ T T+ FLQ EF +GK AE +I E
Sbjct: 253 KMLSATDSQTVSGFLQEEFTRVGKKTAESIIDEF 286
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R A P CLSP E + G+ KE D A+ + A V G PFIVEAG++ GG
Sbjct: 514 MRAADIMAPPTRCLSPITEELITAGLKKEFDADFYASATRDADVHGGDPFIVEAGIAYGG 573
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G ++ RFANR+PL++++G T +K I W +Y ++Q + +
Sbjct: 574 EIRAEGSADVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMI 632
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ + + I ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 633 HVASTNVPFTSESKDAVA-NVPAIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 689
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE P + + IEE G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGIAPDIYVEIEEAG 79
>gi|448317094|ref|ZP_21506652.1| DNA topoisomerase VI subunit B [Natronococcus jeotgali DSM 18795]
gi|445604518|gb|ELY58465.1| DNA topoisomerase VI subunit B [Natronococcus jeotgali DSM 18795]
Length = 816
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 120/211 (56%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y + +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYTLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +EGN R ++
Sbjct: 141 KITSRTQGSSEAEYFELIVDTDENEPEISVEETT-SWDRPHGTRIELEMEGNMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N +F R TD +P E + HP V+L +
Sbjct: 199 HDYVKHTAVVNPHARL------ELEEPNAHFKFERGTDQLPEETEEIRPHPHGVELGTVI 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+++ T T+ FLQ EF +GK A+ +I
Sbjct: 253 KMLSATDSQTISGFLQEEFTRVGKKTADSVI 283
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CLSP + +R G+ KE D A + A+V G PFIVEAG++ GG+ + G
Sbjct: 518 PPTRCLSPITDDLIRAGLEKEFDADFYAAATRDAEVHSGDPFIVEAGIAYGGEIPAEGGA 577
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 578 DVLRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 636
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ I + I ++ AI++ +LKS + K + E++ +K+N+
Sbjct: 637 FTSESKDAIA-NVPAIEDEIELAIREAARELKS-FLNKRRSMEKRRKKQNV 685
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQESG 79
>gi|433590827|ref|YP_007280323.1| DNA topoisomerase VI, B subunit [Natrinema pellirubrum DSM 15624]
gi|448331766|ref|ZP_21521017.1| DNA topoisomerase VI subunit B [Natrinema pellirubrum DSM 15624]
gi|433305607|gb|AGB31419.1| DNA topoisomerase VI, B subunit [Natrinema pellirubrum DSM 15624]
gi|445628725|gb|ELY82028.1| DNA topoisomerase VI subunit B [Natrinema pellirubrum DSM 15624]
Length = 826
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P + + EK DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSEEAEYFELIIDTDSNEPEISVEEKT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM-GPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T T+ F+Q EF +GK A+ +I E + +M + S + V +H
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTADSIIDEFRDRHYGREMRWRPPASHENVDLHAAV 312
Query: 389 RQA 391
A
Sbjct: 313 EDA 315
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CLSP E + G+ KE D A+ + A V G PFIVEAG++ GG +G
Sbjct: 528 PPTRCLSPISEDLITAGLEKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGDLPAEGTG 587
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 588 EVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 646
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ LKS + K + +Q+ +K+N+
Sbjct: 647 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYL-NKRRSMQQRRKKQNV 695
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 71
Query: 73 EITIEEIG 80
+ IEE G
Sbjct: 72 YVEIEEAG 79
>gi|448399835|ref|ZP_21571068.1| DNA topoisomerase VI subunit B [Haloterrigena limicola JCM 13563]
gi|445668288|gb|ELZ20918.1| DNA topoisomerase VI subunit B [Haloterrigena limicola JCM 13563]
Length = 817
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 118/211 (55%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGLTKDSLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSSEAQYFELIVDTDNNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RGQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPAETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++A T T+ F+Q EF +GK A+ +I
Sbjct: 253 KMLAATDSQTVSGFVQEEFTRVGKKTADSII 283
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CLSP E + G+ KE D A+ + A V G PFIVEAG++ GG+ +G
Sbjct: 519 PPTRCLSPISEDLITAGLEKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGELPAEGTA 578
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 579 EVMRFANRVPLVYQRGA-CATTDVVKTIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 637
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ I + EI ++ AI++ +LKS + ++ R Q+R++
Sbjct: 638 FTSESKDAIA-NVPEIEDEIELAIREAARELKSYLNKR---RSMQKRRK 682
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEAG 79
>gi|336254126|ref|YP_004597233.1| type 2 DNA topoisomerase 6 subunit B [Halopiger xanaduensis SH-6]
gi|335338115|gb|AEH37354.1| Type 2 DNA topoisomerase 6 subunit B [Halopiger xanaduensis SH-6]
Length = 822
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGASEAQYFELIVDTDENEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L
Sbjct: 196 QQLHDYIKHTAVVNPHARL------ELREPQAHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T T+ FLQ EF +GK A+ +I
Sbjct: 250 TVMKMLTATDSQTVSGFLQEEFTRVGKKTADSII 283
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A+ S A+V G PF+VEAG++ GG
Sbjct: 516 MRETDIMAPPTRCLSPITADLIEAGLEKEFDADFYASASRDAEVSGGDPFVVEAGIAYGG 575
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G + RFANR+PL++++G T +K I W +Y ++Q + V
Sbjct: 576 EIESEGSAQVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMV 634
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ + + EI ++ AI++ LKS I ++ Q +Q+ +K+N+
Sbjct: 635 HVASTNVPFTSESKDAVA-NVPEIEDEIELAIREAARDLKSYINKR-QSMQQRRKKQNV 691
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQEEG 79
>gi|383624786|ref|ZP_09949192.1| DNA topoisomerase VI subunit B [Halobiforma lacisalsi AJ5]
gi|448697206|ref|ZP_21698284.1| DNA topoisomerase VI subunit B [Halobiforma lacisalsi AJ5]
gi|445781585|gb|EMA32437.1| DNA topoisomerase VI subunit B [Halobiforma lacisalsi AJ5]
Length = 827
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
E +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGSSEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L
Sbjct: 196 QQLHDYIKHTAVVNPHARL------ELREPQAHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T T+ FLQ EF +GK A+ +I
Sbjct: 250 TVMKMLTATDSQTVSGFLQEEFTRVGKKTADSII 283
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + G+ KE D A+ + A+V G PFIVEAG++ GG+ +G
Sbjct: 528 PPTRCLSPISADLIEAGLEKEFDADFYASATRDAEVSGGDPFIVEAGIAYGGELESEGSA 587
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 588 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPKGPAVIMVHVASTNVP 646
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ +LKS + ++ R Q+R++
Sbjct: 647 FTSESKDAVA-NVPEIEDEIELAIREAARELKSYLNKR---RSMQKRRK 691
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 13 KSPKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP 70
+ P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP
Sbjct: 10 EEPGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILP 69
Query: 71 VVEITIEEIG 80
+ + I+E G
Sbjct: 70 DIYVEIQEEG 79
>gi|448373988|ref|ZP_21557873.1| DNA topoisomerase VI subunit B [Halovivax asiaticus JCM 14624]
gi|445660665|gb|ELZ13460.1| DNA topoisomerase VI subunit B [Halovivax asiaticus JCM 14624]
Length = 807
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 118/211 (55%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKDSLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSADAQYYELIVDTDENEPEISVDEQT-TWDRPHGTRIEIEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ K SE +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARIELKEPSE------HFKFERVTDQLPDETEEIRPHPHGVELGTVL 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FLQ+EF +GK AE +I
Sbjct: 253 KMLESTDSHSISGFLQNEFTRVGKKTAESVI 283
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CL+P + + G+ KE D A + A+V G PF+VEAG++ GG+ +G
Sbjct: 514 PPTRCLAPITDELIEAGLKKEFDADFYAAATRDAEVSGGDPFVVEAGIAYGGELEAEGSA 573
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 574 DVLRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 632
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRN 558
F K+ + + EI ++ AI++ +LK + + K + +Q+ KRN
Sbjct: 633 FTSESKDAVA-NVPEIEDEIELAIREASRELK-RYLNKRRSMQQRREKRN 680
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE + LP + + I+E
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAAILPDIYVEIQE 77
>gi|448369503|ref|ZP_21556055.1| DNA topoisomerase VI subunit B [Natrialba aegyptia DSM 13077]
gi|445650678|gb|ELZ03594.1| DNA topoisomerase VI subunit B [Natrialba aegyptia DSM 13077]
Length = 826
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTG 206
+ +YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 78 DGDYYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSG 137
Query: 207 LPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYR 266
P +I+S + + +L +D N P + + E DR HG I++ +E N R
Sbjct: 138 KPAKITSRTEGASDAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-R 195
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
++ Y++ AV+ P+A+ E+ E + +F R TD +P E + HP V+L
Sbjct: 196 QQLHDYIQHTAVVNPHARL------ELREPSSHFKFERATDQLPEETEEIRPHPHGVELG 249
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++A T T+ FLQ EF +GK AE +I
Sbjct: 250 TVIKMLAATDSQTVSGFLQEEFTRVGKKTAESVI 283
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + G+ KE D A+ + A+V G PFIVEAG++ G +G
Sbjct: 528 PPTRCLSPISADLIEAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGDDLPAEGSA 587
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 588 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 646
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 647 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSFLNKR---RSMQKRRK 691
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEDG 79
>gi|433638426|ref|YP_007284186.1| DNA topoisomerase VI, B subunit [Halovivax ruber XH-70]
gi|433290230|gb|AGB16053.1| DNA topoisomerase VI, B subunit [Halovivax ruber XH-70]
Length = 807
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKDSLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + +K+ DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSADAQYYELIVDTDENEPEISV-DKQTTWDRPHGTRIEIEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ K SE +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARIELKEPSE------HFKFERVTDQLPDETEEIRPHPHGVELGTVL 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FLQ+EF +GK AE +I
Sbjct: 253 KMLEATDSHSISGFLQNEFTRVGKKTAESVI 283
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CL+P + + G+ KE D A + A+V G PF+VEAG++ GG+ +G
Sbjct: 514 PPTRCLAPITDELIEAGLKKEFDADFYAAATRDAEVSGGDPFVVEAGIAYGGELEAEGSA 573
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 574 DVLRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 632
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRN 558
F K+ + + EI ++ AI++ +LK + + K + +Q+ KRN
Sbjct: 633 FTSESKDAVA-NVPEIEDEIELAIREASRELK-RYLNKRRSMQQRREKRN 680
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE + LP + + I+E G+
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAAILPDIYVEIQENGQ 80
>gi|448720887|ref|ZP_21703481.1| DNA topoisomerase VI subunit B [Halobiforma nitratireducens JCM
10879]
gi|445780500|gb|EMA31382.1| DNA topoisomerase VI subunit B [Halobiforma nitratireducens JCM
10879]
Length = 839
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTEGSDEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQAHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T T+ FLQ EF +GK A+ +I
Sbjct: 253 KMLTATDSQTVSGFLQEEFTRVGKKTADSII 283
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CL+P + G+ KE D A+ + A+V G PFIVEAG++ GG+ +G
Sbjct: 541 PPTRCLAPISADLIEAGLEKEFDADFYASATRDAEVSGGDPFIVEAGIAYGGELEAEGSA 600
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q V V + ST +P
Sbjct: 601 DVMRFANRVPLVYQRGA-CATTDVVKDIGWRNYGLDQPGGSGLPNGPAVVMVHVASTNVP 659
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 660 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR---RSMQKRRK 704
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 13 KSPKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP 70
+ P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP
Sbjct: 10 EEPGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILP 69
Query: 71 VVEITIEEIG 80
+ + I+E G
Sbjct: 70 DIYVEIQEAG 79
>gi|284165558|ref|YP_003403837.1| DNA topoisomerase VI subunit B [Haloterrigena turkmenica DSM 5511]
gi|284015213|gb|ADB61164.1| DNA topoisomerase VI, B subunit [Haloterrigena turkmenica DSM 5511]
Length = 825
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSSEAEYFELIVDTDSNEPEISVEETT-SWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
++ T T+ FLQ EF +GK A+ +I E
Sbjct: 253 KMLTSTDSQTVSGFLQEEFTRVGKKTADSIIDEF 286
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP E + G+ KE D A+ + A+V G PFIVEAG++ GG +G +
Sbjct: 527 PPTRCLSPISEELISAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGGDLESEGSV 586
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 587 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPKGPAVIMVHVASTNVP 645
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 646 FTSESKDAVA-NVPEIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 694
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + IEE G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDIYVEIEEAG 79
>gi|448385302|ref|ZP_21563808.1| DNA topoisomerase VI subunit B [Haloterrigena thermotolerans DSM
11522]
gi|445656797|gb|ELZ09629.1| DNA topoisomerase VI subunit B [Haloterrigena thermotolerans DSM
11522]
Length = 823
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 10/243 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSEEAEYFELIIDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPAETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM-GPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T T+ F+Q EF +GK A+ +I E + +M + S + V +H
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTADSIIDEFRDRHYGREMRWRPPASHENVDLHAAV 312
Query: 389 RQA 391
A
Sbjct: 313 EDA 315
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CLSP E + G+ KE D A+ + A V G PFIVEAG++ GG +G
Sbjct: 525 PPTRCLSPISEDLITAGLEKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGDLPAEGSG 584
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 585 EVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 643
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 644 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR---RSMQQRRK 688
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 71
Query: 73 EITIEEIG 80
+ IEE G
Sbjct: 72 YVEIEEAG 79
>gi|448298522|ref|ZP_21488550.1| DNA topoisomerase VI subunit B [Natronorubrum tibetense GA33]
gi|445591192|gb|ELY45398.1| DNA topoisomerase VI subunit B [Natronorubrum tibetense GA33]
Length = 833
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 10/243 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKETLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E DR HG I + +E N RS++
Sbjct: 141 KITSRTQGASEAEYFELIVDTDENEPEISVEETT-TWDRPHGTRIVLEMEANMRA-RSQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM-GPEFSPKMAVKSLTSQQIVRIHQLF 388
+++ T T+ FLQ EF +GK AE +I E + +M + S + + +H
Sbjct: 253 KMLSATDSQTVSGFLQEEFTRVGKKSAESIIDEFRDRHYGREMRWRPPASHEEIDLHAAI 312
Query: 389 RQA 391
A
Sbjct: 313 TDA 315
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CL+P E + G+ KE D ++ + A+V G PFIVEAG++ GG
Sbjct: 526 MRETDIMAPPTRCLAPITEELISAGLEKEFEADFYSSATRDAEVHGGDPFIVEAGIAYGG 585
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+G ++ RFANR+PL++++G T +K I W +Y ++Q + V
Sbjct: 586 DLPAEGSADVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMV 644
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ + + EI ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 645 HVASTNVPFTSESKDAVA-NVPEIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 701
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + IEE G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIEEAG 79
>gi|448391961|ref|ZP_21567056.1| DNA topoisomerase VI subunit B [Haloterrigena salina JCM 13891]
gi|445665373|gb|ELZ18051.1| DNA topoisomerase VI subunit B [Haloterrigena salina JCM 13891]
Length = 826
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSSEAEYFELIVDTDSNEPEISVAETT-SWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
++ T T+ FLQ EF +GK A+ +I E
Sbjct: 253 KMLTSTDSQTVSGFLQEEFTRVGKKTADSIIDEF 286
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP E + G+ KE D A+ + A+V G PFIVEAG++ GG+ G
Sbjct: 528 PPTRCLSPISEELISAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGGEIEADGSA 587
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
N+ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 588 NVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPKGPAVIMIHVASTNVP 646
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 647 FTSESKDAVA-NVPEIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 695
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + IEE G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDIYVEIEEAG 79
>gi|448311915|ref|ZP_21501668.1| DNA topoisomerase VI subunit B [Natronolimnobius innermongolicus
JCM 12255]
gi|445603536|gb|ELY57498.1| DNA topoisomerase VI subunit B [Natronolimnobius innermongolicus
JCM 12255]
Length = 847
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRPQGASEAQYFELIVDTDENEPEISVDETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPTAHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM 363
++ T T+ FLQ EF +GK A+ +I E
Sbjct: 253 KMLTATDSQTVSGFLQEEFTRVGKKTADSIIDEF 286
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CL+P + G+ KE D A+ + A+V G PFIVEAG++ GG + + G+
Sbjct: 549 PPTRCLAPISADLISAGLEKEFEADFYASATRDAEVHGGDPFIVEAGIAYGGDLEAEGGV 608
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 609 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPKGPAVIMIHVASTNVP 667
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + I ++ AI++ +LKS + ++ + +Q+ +K+N+
Sbjct: 668 FTSESKDAVA-NVPAIEDEIELAIREAARELKSYLNKR-RSMQQRRKKQNV 716
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAENQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEAG 79
>gi|359416681|ref|ZP_09208971.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032959|gb|EHK01574.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 369
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 140/281 (49%), Gaps = 25/281 (8%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DN G+ + IP +FG++L G+K+ L+Q+RG+ G+G + ++++++TG P+ +
Sbjct: 78 RVEIRDNAIGLDRETIPKVFGKLLYGSKFHKLQQSRGQQGIGISASAMYAQLTTGEPVTV 137
Query: 212 SSSMR---SHNFISFCKLDIDIHRNIPHVHLHEKRE--------NKDRW--HGAEIQVVI 258
S H F+ + ID N P++ E E +KD + HG I++ I
Sbjct: 138 YSKQEGEPCHKFV----VTIDTETNEPNIIEDEVIEPESDEFPGDKDYYFDHGTTIEMNI 193
Query: 259 EGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH 318
E +T + +Y++ A++ PYA+ + + + F R + +P E K
Sbjct: 194 EAKYTHGHHSVFNYLKHTAIMNPYARVVLR-----EPDGNKVEFPRVSRELPKKSKEIKP 248
Query: 319 HPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
HP V+L ++ +I +S T+ FLQ+EF +G++ AE + E + +L
Sbjct: 249 HPHGVELGVMMRMIENSSARTITSFLQNEFTRVGRTSAEEICDEA--DMDTGRRPNTLEK 306
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHP 419
+I + + + K P CLSP GE + G+ KE+ P
Sbjct: 307 DEIETLLKAAQNVKLQSPPTDCLSPIGEDLVLKGLKKEVEP 347
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP + + I EIG K
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILPEIHVLINEIGDKK 76
Query: 84 F-----NSMIGLVDRERV 96
++ IGL DRE +
Sbjct: 77 CRVEIRDNAIGL-DRETI 93
>gi|429190416|ref|YP_007176094.1| DNA topoisomerase VI subunit B [Natronobacterium gregoryi SP2]
gi|448326328|ref|ZP_21515694.1| DNA topoisomerase VI subunit B [Natronobacterium gregoryi SP2]
gi|429134634|gb|AFZ71645.1| DNA topoisomerase VI, B subunit [Natronobacterium gregoryi SP2]
gi|445612543|gb|ELY66264.1| DNA topoisomerase VI subunit B [Natronobacterium gregoryi SP2]
Length = 819
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 127/243 (52%), Gaps = 10/243 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTEGSSEAQYFELIVDTDDNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQAHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM-GPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T T+ FLQ EF +GK A+ +I + +M +S + + V +H
Sbjct: 253 KMLTATDSQTVSGFLQEEFTRVGKKTADSIIDAFRDRHYGREMRWRSPAAHEDVDLHAAV 312
Query: 389 RQA 391
A
Sbjct: 313 SDA 315
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CL+P + G+ KE D A+ + A+V G PFIVEAG++ GG+ +G
Sbjct: 521 PPTRCLAPISAELVEAGLEKEFDADFYASATRDAEVHGGDPFIVEAGIAYGGELQAEGSA 580
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 581 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 639
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 640 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR---RSMQKRRK 684
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEAG 79
>gi|340345433|ref|ZP_08668565.1| DNA topoisomerase VI, B subunit [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520574|gb|EGP94297.1| DNA topoisomerase VI, B subunit [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 612
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
K L TL FL F IG S A + G F P+ + SLT++++V++
Sbjct: 350 KQLTGTVQGETLTAFLTKRFQRIGPSTAVKFAEFAG--FKPEKRMGSLTNEELVKLSDSL 407
Query: 389 RQAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ KF+D P CL+P GE L G+ K PD A A + G PF+VE G++
Sbjct: 408 Q--KFEDFLSPDPSCLAPLGEEPLEKGMKKFFKPDFCAVVQRPASAYSGFPFVVEMGIAY 465
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVS 504
GG+ G +++R+ANRIPLL+++G DVV + + +WS YK+ D V VS I S
Sbjct: 466 GGEIKPGGPHVYRYANRIPLLYDEGSDVVLK-VVNDTDWSRYKVK--GDPPFVIVSHICS 522
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
T+IP+K GKE + D +EI ++ +Q +L + + ++ Q E +++ NL
Sbjct: 523 TRIPYKTVGKENVA-DRQEIERELRLGLQFLSRKLAAYMSKRGQ-AEMAKKRANL 575
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 23/231 (9%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ +P FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 74 YILTVKDNGPGIESKHVPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVYV 133
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS F +L +DI +N P + H +E R G + + +EG++ SKI
Sbjct: 134 KSSTDGKIQDEF-ELLLDIQKNKPVILKHNTKEVTKR--GLSVSICLEGDYAKAGSKIKD 190
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+ + ++ITPYA F K +S+ + MPP P + H +D+ I+ +
Sbjct: 191 YVYETSLITPYATITFD-----DPKGEKFHYSKIVNEMPPAPTIIRPHAHGIDVETIRRM 245
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIV 382
+ E+ Q E NI + E++ ++G +A K+LT I+
Sbjct: 246 MVES---------QFEIPNIDDIMIEKVRKDLG------LAKKNLTFTGIM 281
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
Q SP+EFF N+++AGF NP +SLYT VRE VENSLD+ + P V ++I+ +
Sbjct: 8 FNQISPSEFFYRNRDLAGFSNPTRSLYTAVREFVENSLDACDQKGIFPDVHLSIKAV 64
>gi|300711733|ref|YP_003737547.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
gi|448296158|ref|ZP_21486219.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
gi|299125416|gb|ADJ15755.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
gi|445582881|gb|ELY37221.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
Length = 789
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLP 208
++YR+ +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 80 NYYRLVVEDNGPGITREQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKP 139
Query: 209 IEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK 268
+I+S + + + +L ID N P + E + DR HG I++ +E N R +
Sbjct: 140 AKITSRTQGADEAQYFELIIDTDTNEPEISSAETT-SWDRPHGTRIELEMEANMRA-RGQ 197
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ AV+ P+A+ E+ E N + + R TD +P E + HP V+L +
Sbjct: 198 LRDYIKHTAVVNPHARI------ELHEPNDSFKAERATDQLPAETEEIRPHPHGVELGTV 251
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T TL FLQ EF +GK A +++
Sbjct: 252 IKMLGATDSHTLSGFLQEEFTRVGKKTARKVL 283
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CL+P + + G+ KE + A + A+V G PFIVEAG++ GG
Sbjct: 488 MRETDIIAPPTDCLAPITDELVEAGLRKEFDAEFYAAATRDAEVHGGDPFIVEAGIAYGG 547
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK------IGVFV 500
+ +G +++ RFANR+PL++++G T +K I W +Y ++Q D V V
Sbjct: 548 EISAEGSIDVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGDTGLPNGPAVVMV 606
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
+ ST +PF K+ I + I ++ AI++ +LKS +
Sbjct: 607 HVASTNVPFTSESKDAIA-NVPAIEDEIELAIREAARELKSYL 648
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + + IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVG 79
>gi|329766435|ref|ZP_08257979.1| DNA topoisomerase VI, B subunit [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137034|gb|EGG41326.1| DNA topoisomerase VI, B subunit [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 613
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 322 SVDL----LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT 377
SVDL K L TL+ FL F IG S A + G F P+ + S+T
Sbjct: 338 SVDLDPENPFYKQLTGTVQGETLIAFLTKRFQRIGPSTAVKFAEFAG--FKPEKRMGSMT 395
Query: 378 SQQIVRIHQLFRQAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEG 434
++++V++ + KF+D P CL+P GE L G+ K PD A A + G
Sbjct: 396 NEELVKLSDSLQ--KFEDFLSPDPSCLAPLGEEPLEKGMKKFFKPDFCAVIQRPASAYSG 453
Query: 435 HPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQD 494
PF+VE G++ GG+ G +++R+ANRIPLL+++G DVV + + +W+ YK+ D
Sbjct: 454 FPFVVEMGIAYGGEIRPGGPHVYRYANRIPLLYDEGSDVVLK-VVHDTDWTRYKVK--GD 510
Query: 495 KIGVFVS-IVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
V VS I ST+IP+K GKE + D +EI ++ +Q +L + + ++ Q E
Sbjct: 511 PPFVIVSHICSTRIPYKTVGKENVA-DRQEIERELRLGLQFLSRKLAAYMSKRGQ-AEMA 568
Query: 554 ERKRNL 559
+++ NL
Sbjct: 569 KKRANL 574
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 17/213 (7%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ +P FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 73 YILTVKDNGPGIESKHVPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVYV 132
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS F +L +DI +N P + H +E R G + + +EG+++ SKI
Sbjct: 133 KSSTDGKIQDEF-ELLLDIQKNKPVIIKHNTKEVTKR--GLSVSICLEGDYSKAGSKIKD 189
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+ + ++ITPYA F K +S+ + MPP P + H +D+ I+ +
Sbjct: 190 YVYETSLITPYATITFD-----DPKGEKFHYSKIVNEMPPAPTIIRPHAHGIDVETIRRM 244
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG 364
+ E+ Q E NI ++ E++ ++G
Sbjct: 245 MVES---------QFEIPNIDDAMIEKVRKDLG 268
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VENSLD+ + P V ++I+ +
Sbjct: 7 FNQISPSEFFYRNRDLAGFSNPTRSLYTAVREFVENSLDACDQKGIFPDVHMSIKAVDPD 66
Query: 83 K 83
K
Sbjct: 67 K 67
>gi|161528916|ref|YP_001582742.1| DNA topoisomerase VI subunit B [Nitrosopumilus maritimus SCM1]
gi|160340217|gb|ABX13304.1| DNA topoisomerase VI, B subunit [Nitrosopumilus maritimus SCM1]
Length = 626
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 13/224 (5%)
Query: 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD---P 396
L FL F +G + A + E +F P+ + +LT+Q++V + + KFDD P
Sbjct: 361 LTTFLTKRFQRVGPTTAVKF-AEFA-KFKPEKRMGTLTNQELVNLSDALQ--KFDDFMAP 416
Query: 397 SGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
CL+P GE L GI K +PD VA A + G PFIVE G++ GG G ++
Sbjct: 417 DSSCLAPLGESPLEKGIKKFFNPDFVAVVQRPASAYSGFPFIVEMGIAYGGDIKSGGPHV 476
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTKIPFKGTGKE 515
+R+ANRIPLL+++G DVV + + +W YK+ D + VS I ST+IP+K GKE
Sbjct: 477 YRYANRIPLLYDEGSDVVLK-VVNDTDWGRYKVK--GDPPFIIVSHICSTRIPYKTAGKE 533
Query: 516 YIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ D +EI ++ +Q +L + + ++ Q E +++ NL
Sbjct: 534 NVA-DRQEIERELRLGLQFLSRKLAAFMSKRGQ-AEMAKKRANL 575
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ IP FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 74 YILTVKDNGPGVDAKHIPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVIV 133
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
S F ++ +DI +N P + H +E + G + + +EG+++ +KI
Sbjct: 134 KSCADGQTQNQF-EILLDIQKNKPVIVKHNTKEASKK--GLSVSICLEGDYSKAGNKIRD 190
Query: 272 YMRQMAVITPYAQFLF 287
Y+ + ++ITPYA F
Sbjct: 191 YVYETSLITPYATITF 206
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VEN+LD+ + LP V +TI+ +
Sbjct: 8 FNQISPSEFFYSNRDLAGFSNPTRSLYTAVREFVENALDACDQKGILPDVHLTIKAVEPD 67
Query: 83 K 83
K
Sbjct: 68 K 68
>gi|393795495|ref|ZP_10378859.1| DNA topoisomerase VI subunit B [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 613
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 17/246 (6%)
Query: 322 SVDL----LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT 377
SVDL K L TL+ FL F IG S A + G F P+ + S+T
Sbjct: 338 SVDLDPENPFYKQLTGTVQGETLIAFLTKRFQRIGPSTAVKFAEFAG--FKPEKRMGSMT 395
Query: 378 SQQIVRIHQLFRQAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEG 434
++ +V++ + KF+D P CL+P GE L G+ K PD A A + G
Sbjct: 396 NEDLVKLSDSLQ--KFEDFLSPDPSCLAPLGEEPLEKGMKKFFKPDFCAVIQRPASAYSG 453
Query: 435 HPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQD 494
PF+VE G++ GG+ G +++R+ANRIPLL+++G DVV + + +W+ YK+ D
Sbjct: 454 FPFVVEMGIAYGGEIRPGGPHVYRYANRIPLLYDEGSDVVLK-VVHDTDWTRYKVK--GD 510
Query: 495 KIGVFVS-IVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
V VS I ST+IP+K GKE + D +EI ++ +Q +L + + ++ Q E
Sbjct: 511 PPFVIVSHICSTRIPYKTVGKENVA-DRQEIERELRLGLQFLSRKLAAYMSKRGQ-AEMA 568
Query: 554 ERKRNL 559
+++ NL
Sbjct: 569 KKRANL 574
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 17/213 (7%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ +P FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 73 YILTVKDNGPGIESKHVPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVYV 132
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS F +L +DI +N P + H +E R G + + +EG+++ SKI
Sbjct: 133 KSSTDGKIQDEF-ELLLDIQKNKPVIIKHNTKEVTKR--GLSVSICLEGDYSKAGSKIKD 189
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+ + ++ITPYA F K +S+ + MPP P + H +D+ I+ +
Sbjct: 190 YVYETSLITPYATITFD-----DPKGEKFHYSKIVNEMPPAPTIIRPHAHGIDVETIRRM 244
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG 364
+ E+ Q E NI ++ E++ ++G
Sbjct: 245 MVES---------QFEIPNIDDAMIEKVRKDLG 268
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VENSLD+ + P V ++I+ +
Sbjct: 7 FNQISPSEFFYRNRDLAGFSNPTRSLYTAVREFVENSLDACDQKGIFPDVHMSIKAVDPD 66
Query: 83 K 83
K
Sbjct: 67 K 67
>gi|407463039|ref|YP_006774356.1| DNA topoisomerase VI subunit B [Candidatus Nitrosopumilus koreensis
AR1]
gi|407046661|gb|AFS81414.1| DNA topoisomerase VI subunit B [Candidatus Nitrosopumilus koreensis
AR1]
Length = 627
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 13/224 (5%)
Query: 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD---P 396
L FL F IG + A + G F P+ + + T+Q++V + + KFDD P
Sbjct: 361 LTTFLTKRFQRIGPTTAVKFAEFAG--FKPEKRMGTFTNQELVNLSDSLQ--KFDDFMAP 416
Query: 397 SGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
CL+P GE L GI K +PD VA A + G PFIVE G++ GG G ++
Sbjct: 417 DSSCLAPLGEEPLEKGIKKFFNPDFVAVVQRPASAYSGFPFIVEMGIAYGGDIKSGGPHV 476
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTKIPFKGTGKE 515
+R+ANRIPLL+++G DVV + + +W YK+ D + VS I ST+IP+K GKE
Sbjct: 477 YRYANRIPLLYDEGSDVVLK-VVNDTDWGRYKVK--GDPPFIIVSHICSTRIPYKTAGKE 533
Query: 516 YIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ D +EI ++ +Q +L + + ++ Q E +++ NL
Sbjct: 534 NVA-DRQEIERELRLGLQFLSRKLAAFMSKRGQ-AEMAKKRANL 575
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ IP FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 74 YILTVKDNGPGVDAKHIPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVIV 133
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS+ + F L +DI +N P + H ++E + G + + +EG+++ +KI
Sbjct: 134 KSSVDAKIQNQFEIL-LDIQKNKPIIVKHTEKEVAKK--GLSVSICLEGDYSKAGNKIRD 190
Query: 272 YMRQMAVITPYAQFLF 287
Y+ + ++ITPYA F
Sbjct: 191 YVYETSLITPYATITF 206
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VEN+LD+ + LP V +TI+ +
Sbjct: 8 FNQISPSEFFYSNRDLAGFSNPTRSLYTAVREFVENALDACDQKGILPDVHLTIKAVDPD 67
Query: 83 K 83
K
Sbjct: 68 K 68
>gi|118575977|ref|YP_875720.1| DNA topoisomerase VI, subunit B [Cenarchaeum symbiosum A]
gi|118194498|gb|ABK77416.1| DNA topoisomerase VI, subunit B [Cenarchaeum symbiosum A]
Length = 297
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 339 TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ-AKFDDPS 397
TL FL F +G A + G G P+ + S+ +Q++V++ + ++ F P
Sbjct: 41 TLTTFLTKRFQRVGPGTAAKFAGFAG--LKPERRLGSMANQELVKLSESLQKFTDFLPPD 98
Query: 398 GGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIF 457
CL+P G L G++K PD A A + G PF+VE GV+ GG +G ++
Sbjct: 99 PTCLAPLGAGPLEKGMLKFFEPDFAAVVQRPASAYSGFPFVVEMGVAYGGGISVKGPKVY 158
Query: 458 RFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTKIPFKGTGKEY 516
RFANRIPLL+++G DVV + A ++W Y + D V VS I ST+IP+K GKE
Sbjct: 159 RFANRIPLLYDEGSDVVLKVA-GDMDWRRYSVG--HDPPLVIVSHICSTRIPYKTVGKEN 215
Query: 517 IGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ D EI ++ +Q +L S + +K + Q+R S+
Sbjct: 216 VA-DRPEIEREIRLGMQFILRKLSSYMKKKGRSEMAQKRANLYSK 259
>gi|406911154|gb|EKD51005.1| hypothetical protein ACD_62C00365G0002 [uncultured bacterium]
Length = 575
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/409 (23%), Positives = 191/409 (46%), Gaps = 19/409 (4%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL-KQTRGKFGLGAKMALIWSKMSTGL 207
A +V DNG G+ +D +FG+ L+ +K+G + +RG+ G+G W++++ G
Sbjct: 71 ADLVKVVITDNGPGLTLEDAEKVFGQYLASSKFGRGRCSRGQQGIGISAVTTWAQLTHGT 130
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGN-WTTYR 266
+ + ++ ++ +DI +N +++ + DR G + +++
Sbjct: 131 GATVITKTKAMKQAVKAEIAVDIKKNQGFTK-NKETVDWDRGSGVSCEFIMDARIQLNGE 189
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLL 326
+ +L Y++ A++ P+ + +KF+ + E+ + R TD +P +P T HP ++ L
Sbjct: 190 AGLLTYLQGTALVNPHLRLRYKFLDQ--EEAM---LERVTDQVPTIPERTSPHPHTMKLG 244
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
K T ++ + F + S+ + +IG P + A+ L Q+ +++
Sbjct: 245 EFLAHSHLFGKITTRKWFKEGFSRVSDSVIQDMIGAGIPVGWFEKALSILNEDQLKQMYA 304
Query: 387 LFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVS-- 444
+ + K P + GE +L I + D A S + + P VE ++
Sbjct: 305 VLQNVKLMAPPTKSVMAIGEADLAKSIQRLGEIDFFAVVSRKPTICDFKPVQVEVAIARL 364
Query: 445 --VGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG----V 498
++ + I RFANR+PL F++ +T+ A++ +NW Y + Q + + +
Sbjct: 365 KDKSEEERDTPVQILRFANRVPLQFDKAACAMTK-AVESVNWRPYGLAQPKKTLPQGPYI 423
Query: 499 F-VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRK 546
F VS+VS I FK KE + D + E+ ++ +QQC +L + I R+
Sbjct: 424 FAVSVVSPFIKFKNASKETV-DASDELVEEIRRTLQQCGQKLSAHINRE 471
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ ++ + S AE+F++N GF + K+ TT++E V+NSLD+ E LP + ++++ +
Sbjct: 4 DRSITKSSSAEYFSKNLQQVGFSSFTKATLTTIKEAVDNSLDACEDHGILPEIFVSVQRL 63
Query: 80 GK 81
G+
Sbjct: 64 GE 65
>gi|448346430|ref|ZP_21535315.1| DNA topoisomerase VI subunit B [Natrinema altunense JCM 12890]
gi|445632633|gb|ELY85844.1| DNA topoisomerase VI subunit B [Natrinema altunense JCM 12890]
Length = 824
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSDEAEYFELIVDTDTNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPAETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEM-GPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T T+ F+Q EF +GK A+ +I + +M + T+ + + +H
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTADSIIDAFRDRHYGREMRWRPPTTHEDIDLHGAV 312
Query: 389 RQA 391
A
Sbjct: 313 EDA 315
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CL+P E + G+ KE D A+ + A V G PFIVEAG++ GG+ +G
Sbjct: 526 PPTRCLAPISEELITAGLKKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGELPAEGTG 585
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 586 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 644
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 645 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR---RSMQQRRK 689
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + I+EIG
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDIYVEIQEIG 79
>gi|448330002|ref|ZP_21519295.1| DNA topoisomerase VI subunit B [Natrinema versiforme JCM 10478]
gi|445612990|gb|ELY66705.1| DNA topoisomerase VI subunit B [Natrinema versiforme JCM 10478]
Length = 824
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGLTKETLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSEEAEYFELIVDTDSNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T T+ F+Q EF +GK A+ +I
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTADSII 283
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CL+P E + G+ KE D A+ + A V G PFIVEAG++ GG +G
Sbjct: 526 PPTRCLAPISEELITAGLEKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGDLPAEGTG 585
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + V + ST +P
Sbjct: 586 EVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMVHVASTNVP 644
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ LKS + ++ + +Q+ +K+N+
Sbjct: 645 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR-RSMQQRRKKQNV 693
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 71
Query: 73 EITIEEIG 80
+ I+E G
Sbjct: 72 YVEIQEAG 79
>gi|448340244|ref|ZP_21529217.1| DNA topoisomerase VI subunit B [Natrinema gari JCM 14663]
gi|445630550|gb|ELY83811.1| DNA topoisomerase VI subunit B [Natrinema gari JCM 14663]
Length = 827
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSEEAEYFELIVDTDTNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T T+ F+Q EF +GK A+ +I
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTADSII 283
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CL+P E + G+ KE D A+ + A V G PFIVEAG++ GG+ +G
Sbjct: 529 PPTRCLAPISEDLITAGLKKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGELPAEGTG 588
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 589 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 647
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
F K+ + + EI ++ AI++ LKS + ++ R Q+R++
Sbjct: 648 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR---RSMQQRRK 692
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 71
Query: 73 EITIEEIG 80
+ I+E+G
Sbjct: 72 YVEIQEVG 79
>gi|397772616|ref|YP_006540162.1| DNA topoisomerase VI, B subunit [Natrinema sp. J7-2]
gi|397681709|gb|AFO56086.1| DNA topoisomerase VI, B subunit [Natrinema sp. J7-2]
Length = 825
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 83 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 142
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 143 KITSRTQGSEEAEYFELIVDTDTNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 200
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 201 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 254
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T T+ F+Q EF +GK A+ +I
Sbjct: 255 KMLTATDSQTVSGFVQEEFTRVGKKTADSII 285
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CL+P E + G+ KE D A+ + A V G PFIVEAG++ GG+ +G
Sbjct: 527 PPTRCLAPISEDLITAGLKKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGELPAEGTG 586
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 587 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 645
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ LKS + ++ + +Q+ +K+N+
Sbjct: 646 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR-RSMQQRRKKQNV 694
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 14 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 73
Query: 73 EITIEEIG 80
+ I+E+G
Sbjct: 74 YVEIQEVG 81
>gi|222479739|ref|YP_002565976.1| DNA topoisomerase VI subunit B [Halorubrum lacusprofundi ATCC
49239]
gi|222452641|gb|ACM56906.1| DNA topoisomerase VI, B subunit [Halorubrum lacusprofundi ATCC
49239]
Length = 818
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R+++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIKADEET-TWDRPHGTRIELEMEANMRA-RNQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+F E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARF------ELREPGLDEPLKFERATDELPAETEEIRPHPHGVELGA 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + R P CL+P + G+ KE D A
Sbjct: 494 PDDPPKVTAIAGDRDASADLLEAMRTTDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 553
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 554 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKSIG 612
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + I ST +PF K+ + + I ++ A+++
Sbjct: 613 WRNYGLDQPGGSGLPNGPAVISIHIASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 671
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 672 ELKSYLNKRRSMQQRREKQDVLGR 695
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|118575976|ref|YP_875719.1| DNA topoisomerase VI, subunit B [Cenarchaeum symbiosum A]
gi|118194497|gb|ABK77415.1| DNA topoisomerase VI, subunit B [Cenarchaeum symbiosum A]
Length = 304
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 17/213 (7%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y+++ KDNG G+ +P FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 71 YKLSVKDNGPGVESGHVPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNRPVTV 130
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS + L +DI +N P + H + +K G + + +EG+++ RSKI
Sbjct: 131 KSSTDGATRDEYEML-LDIQKNRPVIQKH--KTSKASGTGLSVAIHLEGDYSKARSKIRD 187
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y+ Q ++ITPYA F + +R+ R MP P + HP VD+ I+ +
Sbjct: 188 YVYQTSLITPYATMTFD-----DPRGEQLRYPRIIKGMPEPPTIIRPHPHGVDVETIRRM 242
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG 364
+ E + + QF LAE++ E+G
Sbjct: 243 MVE-GESPIPQFT--------GDLAEKVRKELG 266
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 22 ALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
Q SP+EFF N+++AGF NP +SLYT VRE VEN LD+ + LP + ++I+
Sbjct: 4 GFNQISPSEFFYRNRDLAGFSNPTRSLYTAVREFVENGLDACDQRGILPDIHLSIK 59
>gi|448339321|ref|ZP_21528349.1| DNA topoisomerase VI subunit B [Natrinema pallidum DSM 3751]
gi|445620550|gb|ELY74046.1| DNA topoisomerase VI subunit B [Natrinema pallidum DSM 3751]
Length = 823
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 115/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A++++++++G P
Sbjct: 81 YYRLIVEDNGPGLTKESLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYAQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L +D N P + + E DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSEEAEYFELIVDTDSNEPEISVEETT-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E +F R TD +P E + HP V+L +
Sbjct: 199 HDYIKHTAVVNPHARL------ELREPQEHFKFERATDQLPEETEEIRPHPHGVELGTVM 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T T+ F+Q EF +GK A +I
Sbjct: 253 KMLTATDSQTVSGFVQEEFTRVGKKTAGSII 283
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGL- 454
P CL+P E + G+ KE D A+ + A V G PFIVEAG++ GG+ +G
Sbjct: 525 PPTRCLAPISEDLITAGLKKEFDADFYASATRDAGVSGGDPFIVEAGIAYGGELPAEGTG 584
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + + + + ST +P
Sbjct: 585 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPVVIMIHVASTNVP 643
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + EI ++ AI++ LKS + ++ + +Q+ +K+N+
Sbjct: 644 FTSESKDAVA-NVPEIEDEIELAIREAARDLKSYLNKR-RSMQQRRKKQNV 692
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 15 PKTPNESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVV 72
P E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP +
Sbjct: 12 PGIAEELAESQQSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDI 71
Query: 73 EITIEEIG 80
+ I+E+G
Sbjct: 72 YVEIQEVG 79
>gi|448448962|ref|ZP_21591460.1| DNA topoisomerase VI subunit B [Halorubrum litoreum JCM 13561]
gi|448506625|ref|ZP_21614581.1| DNA topoisomerase VI subunit B [Halorubrum distributum JCM 9100]
gi|448524344|ref|ZP_21619326.1| DNA topoisomerase VI subunit B [Halorubrum distributum JCM 10118]
gi|445699575|gb|ELZ51599.1| DNA topoisomerase VI subunit B [Halorubrum distributum JCM 9100]
gi|445700414|gb|ELZ52415.1| DNA topoisomerase VI subunit B [Halorubrum distributum JCM 10118]
gi|445814054|gb|EMA64026.1| DNA topoisomerase VI subunit B [Halorubrum litoreum JCM 13561]
Length = 820
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIQADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPLKFERATDELPAETEEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKF 393
ET++G +++ V + P+ PK+ + + R
Sbjct: 478 ETARGNVVEAFWSRAVTV-------------PDDPPKVKAIAGDRDAAADLLDAMRTTDI 524
Query: 394 DDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG 453
P CL+P + G+ KE D A + A+V G PFIVEAG++ GG+ G
Sbjct: 525 LAPPTDCLAPITAELVEAGLRKEYDADFYAAATRDAEVHGGDPFIVEAGIAYGGEIPADG 584
Query: 454 -LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTK 506
+ + RFANR+PL++++G T +K I W +Y ++Q + + + ST
Sbjct: 585 SVELLRFANRVPLVYQRGA-CATTDVIKNIGWRNYGLDQPGGSGMPNGPAVISIHVASTN 643
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+PF K+ + + EI ++ A+++ +LKS + ++ ++++E++ L R
Sbjct: 644 VPFTSESKDALA-NVPEIEDEIELAVREAARELKSFLNKRRSMQQRREKQDVLGR 697
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGYLPDIYIEIEEVG 79
>gi|448479368|ref|ZP_21604220.1| DNA topoisomerase VI subunit B [Halorubrum arcis JCM 13916]
gi|445822646|gb|EMA72410.1| DNA topoisomerase VI subunit B [Halorubrum arcis JCM 13916]
Length = 820
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIQADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPLKFERATDELPAETEEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKF 393
ET++G +++ V + P+ PK+ + + R
Sbjct: 478 ETARGNVVEAFWSRAVTV-------------PDDPPKVKAIAGDRDAAADLLDAMRTTDI 524
Query: 394 DDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG 453
P CL+P + G+ KE D A + A+V G PFIVEAG++ GG+ G
Sbjct: 525 LAPPTDCLAPITAELVEAGLRKEYDADFYAAATRDAEVHGGDPFIVEAGIAYGGEIPADG 584
Query: 454 -LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTK 506
+ + RFANR+PL++++G T +K I W +Y ++Q + + + ST
Sbjct: 585 SVELLRFANRVPLVYQRGA-CATTDVIKNIGWRNYGLDQPGGSGMPNGPAVISIHVASTN 643
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+PF K+ + + EI ++ A+++ +LKS + ++ ++++E++ L R
Sbjct: 644 VPFTSESKDALA-NVPEIEDEIELAVREAARELKSFLNKRRSIQQRREKQDVLGR 697
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGYLPDIYIEIEEVG 79
>gi|148508004|gb|ABQ75803.1| DNA topoisomerase VI subunit B [uncultured haloarchaeon]
Length = 786
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 119/212 (56%), Gaps = 7/212 (3%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLP 208
S+Y + +DNG G+P ++P +FG++L G+++G L Q+RG+ G+G A+++S++++G P
Sbjct: 84 SYYTLVVEDNGPGIPEKNVPKVFGKLLYGSRFGSLTQSRGQQGIGISAAVLYSQLTSGKP 143
Query: 209 IEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK 268
I+S + ++ +L ++ N P +H + N D HG I++ +E N R
Sbjct: 144 AVITSRPKGNDTAFQVELTLNTDTNTPEIHASQNI-NWDHSHGTRIELQMEANLRA-RKP 201
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+L Y++ AV+ P+++ F + E + F R T+ +P P E K HP V+L +
Sbjct: 202 LLEYIQATAVVNPHSEITF-MEPKTDEPHY---FPRVTEELPNQPEEIKPHPHGVELGQV 257
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FL +EF +G+ A+ +I
Sbjct: 258 MKMLENTDSHSVTGFLCNEFTRVGQKTADDII 289
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
+ A PS CLSP +++ G+ KE++ + + A V GHPF++E G++ GG
Sbjct: 493 MQSASISRPSTKCLSPITPEHIKKGLNKEVNAEFYTAVTRDAGVHSGHPFVIEVGIAYGG 552
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
G + + R+ANR+PL+++QG +T+T ++ I W +YK+ Q + + V
Sbjct: 553 DIPANGKIELLRYANRVPLVYQQGACAITQT-IQNIGWRNYKLTQKGGTGLPDGPVMLVV 611
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ ST +PF K+ + I V+ A++Q LK + RK R QQ+R++
Sbjct: 612 HVASTNVPFTSESKDALA-SVPNIEHDVEQAVRQAARDLKGHLKRK---RSQQKRRK 664
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 6 DPKKRKSKSPKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSA 63
+P+ R E A Q+ S AEFF +NK++ GFD+P +SL T+V+E V+N+LD+
Sbjct: 7 EPQTRSDNKTGIAEELAANQREISVAEFFEKNKHMLGFDSPARSLITSVKEAVDNALDAT 66
Query: 64 ESISELPVVEITIEE 78
E LP V + I E
Sbjct: 67 EEAGILPSVTVEISE 81
>gi|76802379|ref|YP_327387.1| DNA topoisomerase VI subunit B [Natronomonas pharaonis DSM 2160]
gi|121696732|sp|Q3IPW6.1|TOP6B_NATPD RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|76558244|emb|CAI49832.1| DNA topoisomerase VI subunit B [Natronomonas pharaonis DSM 2160]
Length = 798
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 11/216 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
RG+ +YR+T +DNG G+ + IP +FG++L G+++ +QTRG+ G+G A+++S+++
Sbjct: 81 RGD--YYRLTVEDNGPGITKEQIPKVFGKLLYGSRFHAREQTRGQQGIGISAAVLYSQLT 138
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
+G P +I+S SH+ + +L ID N P + HE+ +R HG I++ +EGN
Sbjct: 139 SGKPAKITSKTDSHSSAQYFELTIDTDTNEPEID-HEREATWERPHGTRIELEMEGNMRA 197
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVD 324
R ++ Y++ AV+ P+A+ F E + + R T+ +PP E + HP V+
Sbjct: 198 -RKQLHDYIKYTAVVNPHARVEFH------EPEDSFKSERATEELPPETEEIRPHPHGVE 250
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
L + ++ T +L FLQ EF +G A+ +I
Sbjct: 251 LGTLLKMLDATDSYSLSGFLQAEFTRVGNKTADGVI 286
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
N+ +++ ER + P+ P + + R+ + R P CL+P E +
Sbjct: 461 NVVEAVWERAV--TVPDEPPTVTEVADNRDAAARLLEAMRSTDILSPPTDCLAPISEDLV 518
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
+ G+ KE + + + A V G PF+VE G++ GG G + RFANR+PL+++
Sbjct: 519 KAGLKKEYDAEFYTSVTRDASVHGGDPFVVEVGIAHGGDIAVDGSVETLRFANRVPLVYQ 578
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G T +K +NW +Y ++Q + V + ST +PF K+ + +
Sbjct: 579 RGA-CATVDVLKGVNWRNYGLDQPGGSGMPSGPAVIMVHVASTSVPFTSESKDAVA-NIP 636
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
EI ++ A+QQ L+S + +K + E++ RK+++
Sbjct: 637 EIEDELRLALQQAGRDLQSHL-KKQRSLEKRRRKQDV 672
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK + GFD+ K+L T V+E V+N+LD+AE LP + + IE+ G
Sbjct: 29 SIAEFFEKNKQMLGFDSDAKALVTAVKEAVDNALDAAEEAGILPDIYVEIEDRG 82
>gi|448423791|ref|ZP_21582124.1| DNA topoisomerase VI subunit B [Halorubrum terrestre JCM 10247]
gi|445683048|gb|ELZ35453.1| DNA topoisomerase VI subunit B [Halorubrum terrestre JCM 10247]
Length = 820
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIQADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPLKFERATDELPAETEEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADGVI 285
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKF 393
ET++G +++ V + P+ PK+ + + R
Sbjct: 478 ETARGNVVEAFWSRAVTV-------------PDDPPKVKAIAGDRDAAADLLDAMRTTDI 524
Query: 394 DDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG 453
P CL+P + G+ KE D A + A+V G PFIVEAG++ GG+ G
Sbjct: 525 LAPPTDCLAPITAELVEAGLRKEYDADFYAAATRDAEVHGGDPFIVEAGIAYGGEIPADG 584
Query: 454 -LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTK 506
+ + RFANR+PL++++G T +K I W +Y ++Q + + + ST
Sbjct: 585 SVELLRFANRVPLVYQRGA-CATTDVIKNIGWRNYGLDQPGGSGMPNGPAVISIHVASTN 643
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+PF K+ + + EI ++ A+++ +LKS + ++ ++++E++ L R
Sbjct: 644 VPFTSESKDALA-NVPEIEDEIELAVREAARELKSFLNKRRSMQQRREKQDVLGR 697
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGYLPDIYIEIEEVG 79
>gi|448576110|ref|ZP_21642153.1| DNA topoisomerase VI subunit B [Haloferax larsenii JCM 13917]
gi|445729790|gb|ELZ81384.1| DNA topoisomerase VI subunit B [Haloferax larsenii JCM 13917]
Length = 798
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSADAEYFELVIDTDKNEPEIR-DEKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYIQHTAVVNPHARL------ELREPGLDEPMKFERATDQLPQQTEEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +G E++I
Sbjct: 253 LLKMLGATESYSVSGFLQEEFTRVGAKTTEKII 285
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ R+ P CLSP + G+ KE D A + A+V G PFIVEAG++
Sbjct: 494 EAMRETDILAPPTDCLSPITSELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAY 553
Query: 446 GGKDVKQ--GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIG 497
GG D+K +++ RFANR+PL++++G +T +K I W +Y ++Q +
Sbjct: 554 GG-DIKSDGSIDLLRFANRVPLVYQRGACTITH-VVKDIGWRNYGLDQPGGSGMPKGPAV 611
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV--RKIQDREQQE 554
+ V + ST +PF K+ + D I V+ AI++ +LKS + R +Q R Q++
Sbjct: 612 LMVHVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKRRSLQKRRQKQ 669
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E+
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEISEV 78
>gi|448733642|ref|ZP_21715884.1| DNA topoisomerase VI subunit B [Halococcus salifodinae DSM 8989]
gi|445802162|gb|EMA52469.1| DNA topoisomerase VI subunit B [Halococcus salifodinae DSM 8989]
Length = 797
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 115/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ D++P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 80 YYRLVVEDNGPGITADELPKVFGKLLYGSRFHKREQARGQQGIGISAAVLYSQLTSGKPA 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P V + E DR HG I++ +E N RS++
Sbjct: 140 KITSRTQGSQDAKYFELIIDTDTNEPEVSVDETT-TWDRPHGTRIELEMEANMRA-RSQL 197
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N + R TD +P E + HP V+L +
Sbjct: 198 RDYVKHTAVVNPHARI------ELREPNGEFKAERATDQLPAETEEIRPHPHGVELGTLL 251
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FLQ EF +G A +I
Sbjct: 252 KMLDSTDSYSVSGFLQGEFTRVGAKTATSVI 282
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P GCLSP +R G+ KE D A+ + A V G PFIVEAG++ GG
Sbjct: 495 MRETDIIAPPTGCLSPITADLVRSGLEKEFDADFYASATRDAGVHGGDPFIVEAGIAYGG 554
Query: 448 KDVKQ-GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ + G+ + RFANR+PL++++G T +K I W +Y ++Q + +
Sbjct: 555 ELAAEGGVELLRFANRVPLVYQRGA-CATTDVLKGIGWRNYGLDQPGGSGLPNGPAVIMI 613
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ I + EI ++ A+++ +LKS + ++ ++++E++ LS
Sbjct: 614 HVASTNVPFTSESKDAIA-NVPEIEDEIELAVREAARELKSYLNKRQSMQQRREKQDVLS 672
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + I IEE+G
Sbjct: 25 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGHLPDIYIEIEEVG 78
>gi|448455340|ref|ZP_21594520.1| DNA topoisomerase VI subunit B [Halorubrum lipolyticum DSM 21995]
gi|445813942|gb|EMA63915.1| DNA topoisomerase VI subunit B [Halorubrum lipolyticum DSM 21995]
Length = 818
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIKADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPLKFERATDELPAETEEIRPHPHGVELGA 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + R P CL+P + G+ KE D A
Sbjct: 494 PDDPPKVKSIAGDRDAAADLLEAMRTTDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 553
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 554 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKSIG 612
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + I ++ A+++
Sbjct: 613 WRNYGLDQPGGSGLPNGPAVISIHVASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 671
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L +
Sbjct: 672 ELKSYLNKRRSMQQRREKQDVLGK 695
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|448502261|ref|ZP_21612534.1| DNA topoisomerase VI subunit B [Halorubrum coriense DSM 10284]
gi|445694417|gb|ELZ46546.1| DNA topoisomerase VI subunit B [Halorubrum coriense DSM 10284]
Length = 815
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIQADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETEEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADGVI 285
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + R P GCL+P + G+ KE D A
Sbjct: 491 PDDPPKVKSIAGDRDAAADLLEAMRTTDILAPPTGCLAPITAELVEAGLRKEYDADFYAA 550
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 551 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKHIG 609
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + I ++ A+++
Sbjct: 610 WRNYGLDQPGGSGMPNGPAVISIHVASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 668
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 669 ELKSYLNKRRSMQQRREKQDVLGR 692
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|448439381|ref|ZP_21588022.1| DNA topoisomerase VI subunit B [Halorubrum saccharovorum DSM 1137]
gi|445691432|gb|ELZ43623.1| DNA topoisomerase VI subunit B [Halorubrum saccharovorum DSM 1137]
Length = 820
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIKADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETKEIRPHPHGVELGA 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + R P CL+P + G+ KE D A
Sbjct: 496 PDDPPKVKSIAGSRDAAADLLDAMRTTDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 555
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 556 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGKVELLRFANRVPLVYQRGA-CATTDVIKNIG 614
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + I ++ A+++
Sbjct: 615 WRNYGLDQPGGSGLPNGPAVISIHVASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 673
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 674 ELKSFLNKRRSMQQRREKQDVLGR 697
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|448730193|ref|ZP_21712503.1| DNA topoisomerase VI subunit B [Halococcus saccharolyticus DSM
5350]
gi|445793924|gb|EMA44489.1| DNA topoisomerase VI subunit B [Halococcus saccharolyticus DSM
5350]
Length = 798
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ +++P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 80 YYRLVVEDNGPGITAEELPKVFGKLLYGSRFHKREQARGQQGIGISAAVLYSQLTSGKPA 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + + +L ID N P V + E DR HG I++ +E N RS++
Sbjct: 140 KVTSRTQGSSEAKYFELIIDTDTNEPEVSVDETT-TWDRPHGTRIELEMEANMRA-RSQL 197
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N + R TD +P E + HP V+L +
Sbjct: 198 RDYVKHTAVVNPHARI------ELREPNGEFKAERATDQLPAETEEIRPHPHGVELGTLL 251
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FLQ EF +G A +I
Sbjct: 252 KMLDATDSYSISGFLQEEFTRVGAKTATSVI 282
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP +R G+ KE D A+ + A V G PFIVEAG++ GG
Sbjct: 496 MRETDIIAPPTDCLSPITADLVRSGLEKEFDADFYASATRDAGVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQ-GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ + G+ + RFANR+PL++++G T +K I W +Y ++Q + +
Sbjct: 556 ELAAEGGIELLRFANRVPLVYQRGA-CATTDVLKGIGWRNYGLDQPGGSGLPNGPAVIMI 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ ST +PF K+ I + EI ++ A+++ +LKS + ++ Q +Q+ +K+++
Sbjct: 615 HVASTNVPFTSESKDAIA-NVPEIEDEIELAVREAARELKSYLNKR-QSMQQRRQKQDV 671
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + I IEE+G
Sbjct: 25 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGHLPDIYIEIEEVG 78
>gi|87306803|ref|ZP_01088949.1| DNA topoisomerase VI subunit B [Blastopirellula marina DSM 3645]
gi|87290176|gb|EAQ82064.1| DNA topoisomerase VI subunit B [Blastopirellula marina DSM 3645]
Length = 687
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 147/325 (45%), Gaps = 36/325 (11%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+ +DNG G+ IP +FG++L G+K+ L+ +RG+ G+G A ++ ++TG P++
Sbjct: 83 YKAGIQDNGPGIMKKQIPLIFGKLLYGSKFHRLRMSRGQQGIGISAAGMYGLLTTGKPVK 142
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHV-------------------------HLHEKREN 245
I S + + +L I+ N P + H K +
Sbjct: 143 IVSKVSIRKPAHYYELRINTKTNDPEILDGIDIDAGEKGHKYIADHGIEWVTHYDPKTPD 202
Query: 246 K---DRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRF 302
+ G + + +E + R + Y+ Q A+ P+ + + +N +
Sbjct: 203 AKPAELRSGTRVTIELEAKYQRGRGSVDEYLEQTAIANPHVTIHY-----LDPENNLRLY 257
Query: 303 SRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGE 362
SR T +PP P+E K HP V++ + ++ ET + T+ FL + F + +A+++
Sbjct: 258 SRSTRKLPPEPIEIKPHPYGVEVGRLITMLKETPETTISGFLTNSFSRVSNGIAKQIC-- 315
Query: 363 MGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMV 422
G + + K LT I +++ + K +PS C+ P GE L G+ + + +
Sbjct: 316 EGAKIGTRTHGKKLTRDDIEKLYHSIQATKISNPSTDCIVPIGEELLLKGMHQVVPAEFY 375
Query: 423 ATYSGSAQVFEGHPFIVEAGVSVGG 447
+ V+ G+PF++E ++ GG
Sbjct: 376 CAATRPPSVYRGNPFLIEVALAYGG 400
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 1 MGNDGDPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSL 60
M PK ++ + +T +S ++ S +EFFA+N+++ GFDNP K+L TT++E V+NSL
Sbjct: 1 MTTPSSPKTKRRATAETMAKSQ-REISVSEFFAKNRHLLGFDNPRKALLTTIKEAVDNSL 59
Query: 61 DSAESISELPVVEITIEEIGKSKFNSMI 88
D+ E +P + + +E+ G +++ + I
Sbjct: 60 DACEEAGIVPEIWVHVEQTGVNRYKAGI 87
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 452 QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-----IGVFVSIVSTK 506
Q +N+ R+ANR+PL F Q G +T++ + +NW SY ++Q++ + + V + S
Sbjct: 479 QSMNVLRYANRVPLQFSQAGCAITQS-ITSMNWRSYGLSQSRGNVPSGPVTLMVHMASVW 537
Query: 507 IPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+PF KE + EI ++ +Q +L +RK Q +QQ +R++
Sbjct: 538 VPFTSESKEAVA-SYPEIQKELRLGLQAVGRKL-GMFLRKRQLVKQQADRRSI 588
>gi|448438356|ref|ZP_21587848.1| DNA topoisomerase VI subunit B [Halorubrum tebenquichense DSM
14210]
gi|445679177|gb|ELZ31650.1| DNA topoisomerase VI subunit B [Halorubrum tebenquichense DSM
14210]
Length = 821
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIQADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETHEIRPHPHGVELGS 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + + R P CL+P E + G+ KE D A
Sbjct: 497 PDDPPKVTAIAGSRDAAADLLEAMRTTDILAPPTDCLAPITEELVEAGLRKEYDADFYAA 556
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 557 ATRDADVHGGDPFIVEAGIAYGGEIPSEGSVELLRFANRVPLVYQRGA-CATTDVIKSIG 615
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + EI ++ A+++
Sbjct: 616 WRNYGLDQPGGSGMPNGPAVISIHVASTNVPFTSESKDALA-NVPEIEDEIELAVREAAR 674
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 675 ELKSFLNKRRSMQQRREKQDVLGR 698
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|448469584|ref|ZP_21600266.1| DNA topoisomerase VI subunit B [Halorubrum kocurii JCM 14978]
gi|445808921|gb|EMA58972.1| DNA topoisomerase VI subunit B [Halorubrum kocurii JCM 14978]
Length = 820
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 119/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQSRAQYFELIIDTDTNEPEIKADEET-TWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETKEIRPHPHGVELGA 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ +I
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 285
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + R P CL+P + G+ KE D A
Sbjct: 496 PDDPPKVKAIAGDRDAAADLLDAMRTTDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 555
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 556 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKNIG 614
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + I ++ A+++
Sbjct: 615 WRNYGLDQPGGSGLPNGPAVISIHVASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 673
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 674 ELKSYLNKRRSMQQRREKQDVLGR 697
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E + LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAAVLPDIYIEIEEVG 79
>gi|407465399|ref|YP_006776281.1| DNA topoisomerase VI subunit B [Candidatus Nitrosopumilus sp. AR2]
gi|407048587|gb|AFS83339.1| DNA topoisomerase VI subunit B [Candidatus Nitrosopumilus sp. AR2]
Length = 622
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 13/224 (5%)
Query: 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD---P 396
L FL F IG + A + G F P+ + +L++Q++V + + KF+D P
Sbjct: 361 LTTFLTKRFQRIGPTTAVKFAEFAG--FKPEKRMGTLSNQELVHLSDSLQ--KFEDFMAP 416
Query: 397 SGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
CL+P GE L GI K +PD A + G PFI+E G++ GG G ++
Sbjct: 417 DSTCLAPLGEEPLEKGIKKFFNPDFTAVVQRPPSAYSGFPFIIEMGIAYGGDIKSGGPHV 476
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVS-IVSTKIPFKGTGKE 515
+R+ANRIPLL+++G DVV + + +W YK+ D + VS I ST+IP+K GKE
Sbjct: 477 YRYANRIPLLYDEGSDVVLK-VVNDTDWGRYKVK--GDPPFIIVSHICSTRIPYKTAGKE 533
Query: 516 YIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
+ D EI ++ A+Q +L + + ++ Q + +++ NL
Sbjct: 534 NVA-DRPEIERELRLALQFLSRKLAAYMSKRGQ-ADMAKKRANL 575
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y +T KDNG G+ + IP FG VL G+K+GLKQ RG FGLGA MA+++ +++T P+ +
Sbjct: 74 YILTVKDNGPGIDAEHIPLAFGTVLYGSKFGLKQARGMFGLGATMAILYGQITTNKPVTV 133
Query: 212 SSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILH 271
SS+ F +L +DI +N P + H +E + G + + +EG+++ +KI
Sbjct: 134 KSSVDGETQHIF-ELLLDIQKNKPVIVQHITKEVSKK--GLSVSICLEGDYSKAGNKIRD 190
Query: 272 YMRQMAVITPYAQFLF 287
Y+ + ++ITPYA F
Sbjct: 191 YVYETSLITPYASITF 206
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
Q SP+EFF N+++AGF NP +SLYT VRE VEN+LD+ + LP V +TI+ +
Sbjct: 8 FNQISPSEFFYSNRDLAGFSNPTRSLYTAVREFVENALDACDQKGILPDVHLTIKAVEPE 67
Query: 83 K 83
K
Sbjct: 68 K 68
>gi|448473865|ref|ZP_21601926.1| DNA topoisomerase VI subunit B [Halorubrum aidingense JCM 13560]
gi|445818444|gb|EMA68301.1| DNA topoisomerase VI subunit B [Halorubrum aidingense JCM 13560]
Length = 818
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 118/213 (55%), Gaps = 11/213 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P + E+ DR HG I++ +E N R ++
Sbjct: 141 KITSRPKGQARAQYFELIIDTDTNEPEIKADEET-TWDRPHGTRIELEMEANMRA-RGQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETKEIRPHPHGVELGA 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A+ ++
Sbjct: 253 LIKMLEATESYSVSGFLQEEFTRVGKKTADSVL 285
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + R P CL+P + G+ KE D A
Sbjct: 494 PDDPPKVRDVAADRDASADLLEAMRATDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 553
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG +G + + RFANR+PL++++G T +K I
Sbjct: 554 ATRDAEVHGGDPFIVEAGIAYGGDIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKSIG 612
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + I ++ A+++
Sbjct: 613 WRNYGLDQPGGSGMPNGPAVISIHVASTNVPFTSESKDALA-NVPAIEDEIELAVREAAR 671
Query: 538 QLKSKIVRKIQDREQQERK 556
+LKS + ++ R Q+R+
Sbjct: 672 ELKSYLNKR---RSMQQRR 687
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGVLPDIYIEIEEVG 79
>gi|257388768|ref|YP_003178541.1| DNA topoisomerase VI subunit B [Halomicrobium mukohataei DSM 12286]
gi|257171075|gb|ACV48834.1| DNA topoisomerase VI, B subunit [Halomicrobium mukohataei DSM
12286]
Length = 807
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 115/213 (53%), Gaps = 9/213 (4%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLP 208
+YR+ +DNG G+ + IPN+FG++L G+++ + Q RG+ G+G A++ S+ ++G P
Sbjct: 80 DYYRLIVEDNGPGITREQIPNIFGKLLYGSRFHKREQNRGQQGIGISAAVLHSQKTSGKP 139
Query: 209 IEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK 268
+I+S H + +L +D N P + + E +R HG I++ +E N R +
Sbjct: 140 AKITSRTEQHADAQYFELIVDTDANEPEISV-EDTTTWERPHGTRIELEMEANMRA-RQQ 197
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ AV+ P+A+ E+ E +++ R TD +P E + HP V+L +
Sbjct: 198 LHDYIKHTAVVNPHARI------ELVEPKEHLKYERTTDQLPDETEEIRPHPHGVELGTL 251
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G+ ++ +I
Sbjct: 252 LKMLESTDSYSVSGFMQGEFTRVGQKTSDDVIA 284
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 10/179 (5%)
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ R+A P CL+P + G+ KE D A + A V G PFIVEAG++
Sbjct: 505 EAMREADIIAPPTDCLAPITAELVEAGLKKEFDADFFAASTRDASVHGGDPFIVEAGIAY 564
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVF 499
GG + RFANR+PL++++G T +K INW +Y ++Q D V
Sbjct: 565 GGDIEHDQAQVMRFANRVPLVYQRGA-CATTDVVKSINWRNYGLDQPGGSGIPNDAAVVM 623
Query: 500 VSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV--RKIQDREQQERK 556
V I ST +PF K+ + + EI S ++ AI++ +LKS + R +Q R ++E K
Sbjct: 624 VHIASTNVPFTSESKDAVA-NIPEIESEIELAIREAARELKSYLNKRRSMQKRRKKENK 681
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +N+ + GFD+ K+L T V+E V+N+LD+ E P + + I+E G
Sbjct: 26 SIAEFFEKNRQMLGFDSGAKALVTAVKEAVDNALDACEEAGITPDIYVEIQEAG 79
>gi|448410256|ref|ZP_21575121.1| DNA topoisomerase VI subunit B [Halosimplex carlsbadense 2-9-1]
gi|445671952|gb|ELZ24531.1| DNA topoisomerase VI subunit B [Halosimplex carlsbadense 2-9-1]
Length = 812
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLIVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P + + E +R HG I++ +E N R+++
Sbjct: 141 KITSRTKGGADAEYFELIIDTDTNEPEIDVEETT-TWERPHGTRIEMEMEANMRA-RNQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E + +++ R TD +P E + HP V+L +
Sbjct: 199 HDYIKDTAVVNPHARI------ELREPSEHMKYERVTDQLPAETEEIRPHPHGVELGTLI 252
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
++ T ++ FLQ+EF +G ++ +I
Sbjct: 253 KMLDATDSYSVSGFLQNEFTRVGGKTSDSVI 283
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 13/216 (6%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
N+ ++L ER G P+ P + + + R+ P CLSP +
Sbjct: 473 NVVEALWERARG--VPDDPPNVTEIAGDRDASSELLDAMRETDIIAPPTDCLSPIESDLI 530
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
G+ KE D A + A V G PFIVEAG++ GG +G + RFANR+PL+++
Sbjct: 531 EEGLRKEYDADFYAASTRDASVHGGDPFIVEAGLAYGGDVEAEGKAEVMRFANRVPLVYQ 590
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G T +K+INW +Y ++Q + + V + ST +PF K+ + +
Sbjct: 591 RGA-CATTDVVKQINWRNYNLDQPGGSGIPNGPVVIMVHVASTNVPFTSESKDAVA-NVP 648
Query: 523 EIASAVKSAIQQCCIQLKS--KIVRKIQDREQQERK 556
E+ S ++ A+++ +LKS K R +Q R +++ K
Sbjct: 649 ELESEIELAMREAARELKSFLKKRRSMQQRREKQDK 684
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDACEEAGIAPDIYVEIQEAG 79
>gi|448739096|ref|ZP_21721115.1| DNA topoisomerase VI subunit B, partial [Halococcus thailandensis
JCM 13552]
gi|445800613|gb|EMA50967.1| DNA topoisomerase VI subunit B, partial [Halococcus thailandensis
JCM 13552]
Length = 325
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 115/212 (54%), Gaps = 10/212 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ +++P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 80 YYRLVVEDNGPGITSEELPKVFGKLLYGSRFHKREQARGQQGIGISAAVLYSQLTSGKPA 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P V + E DR HG I++ +E N R ++
Sbjct: 140 KITSRTQGGE-AKYFELIIDTDTNEPEVSVDETT-TWDRTHGTRIELEMEANMRA-RGQL 196
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N + R TD +P E + HP V+L +
Sbjct: 197 RDYVKHTAVVNPHARI------ELREPNGEFKAERATDQLPAETEEIRPHPHGVELGTLL 250
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ FLQ EF +GK A +I
Sbjct: 251 KMLESTDSYSVSGFLQEEFTRVGKKTATNVIA 282
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 19 NESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
+E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + I I
Sbjct: 15 DELAASQRSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGHLPDIYIEI 74
Query: 77 EEIG 80
EE+G
Sbjct: 75 EEVG 78
>gi|291333321|gb|ADD93028.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S04-C246]
Length = 401
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 154/310 (49%), Gaps = 21/310 (6%)
Query: 258 IEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTI----RFSRRTDVMPPVP 313
++G + + + Y+R +++ P+A V +++ I + R T+ +P V
Sbjct: 1 MKGKYQKGKQSVHQYLRMTSIVNPHASISLM----VRDRDGNIIDQGNWPRTTERLPRVV 56
Query: 314 VETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLA-ERLIGEMGPEFSPKMA 372
E K HP + L ++ ++ E+S+ + FL+H F + A E L+ E
Sbjct: 57 SEIKPHPHGIHLGTLQRMLRESSERKMTSFLRHNFSGVSMRAAREILVKAKVDEGREPKR 116
Query: 373 VKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVF 432
+K+ +Q+I+ F+ K P CLSP + ++ G+ K + +T + + V
Sbjct: 117 IKADDAQEIL---NSFQNVKLLSPPMDCLSPIDDLLIKKGLSKAIDSRFASTVTRNPSVS 173
Query: 433 EGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
+G+PF +E G+ GG G + + RFANR+PL+++QGG ++T+ A++ ++W Y ++
Sbjct: 174 QGNPFQIEVGLVFGGDLSADGPIEVLRFANRVPLMYQQGGCLLTK-ALESVDWKRYGLDH 232
Query: 492 TQDK------IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
+ + + + ST + F KE + ++ +E+ ++ A+ + LK+ + +
Sbjct: 233 PGGRGVPKGPAALLIHLASTNVQFTSEAKEAVAEN-EEVHEEIRKALLEVGRGLKNHLKK 291
Query: 546 KIQDREQQER 555
Q ++ +E+
Sbjct: 292 SSQRKKAKEK 301
>gi|448614968|ref|ZP_21663996.1| DNA topoisomerase VI subunit B [Haloferax mediterranei ATCC 33500]
gi|445753055|gb|EMA04474.1| DNA topoisomerase VI subunit B [Haloferax mediterranei ATCC 33500]
Length = 798
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 118/212 (55%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGAEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARL------ELREPGLDEPMKFERATDQLPEQTTEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ ++A T ++ FLQ EF +G + ++
Sbjct: 253 LLKMLAATESYSVSGFLQEEFTRVGAKTSSKI 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ R+ P CLSP + G+ KE D A + A+V G PFIVEAG++
Sbjct: 494 EAMRETDILAPPTDCLSPISAGLVEEGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAY 553
Query: 446 GGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGV 498
GG+ +G +++ RFANR+PL++++G +T +K I W +Y ++Q +
Sbjct: 554 GGELKSEGSIDLLRFANRVPLVYQRGACAITHV-VKDIGWRNYNLDQPGGSGMPNGPAVL 612
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ + ST +PF K+ + D I V+ AI++ +LKS + ++ R Q+R++
Sbjct: 613 MIHVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKR---RSLQKRRK 667
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|389847083|ref|YP_006349322.1| DNA topoisomerase VI subunit B [Haloferax mediterranei ATCC 33500]
gi|388244389|gb|AFK19335.1| DNA topoisomerase VI subunit B [Haloferax mediterranei ATCC 33500]
Length = 842
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 118/212 (55%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 125 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 184
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 185 KVTSRTQGAEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 242
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 243 HDYILHTAVVNPHARL------ELREPGLDEPMKFERATDQLPEQTTEIRPHPHGVELGT 296
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ ++A T ++ FLQ EF +G + ++
Sbjct: 297 LLKMLAATESYSVSGFLQEEFTRVGAKTSSKI 328
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ R+ P CLSP + G+ KE D A + A+V G PFIVEAG++
Sbjct: 538 EAMRETDILAPPTDCLSPISAGLVEEGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAY 597
Query: 446 GGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGV 498
GG+ +G +++ RFANR+PL++++G +T +K I W +Y ++Q +
Sbjct: 598 GGELKSEGSIDLLRFANRVPLVYQRGACAITHV-VKDIGWRNYNLDQPGGSGMPNGPAVL 656
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ + ST +PF K+ + D I V+ AI++ +LKS + ++ R Q+R++
Sbjct: 657 MIHVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKR---RSLQKRRK 711
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 67 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 123
>gi|448585463|ref|ZP_21647856.1| DNA topoisomerase VI subunit B [Haloferax gibbonsii ATCC 33959]
gi|445726163|gb|ELZ77780.1| DNA topoisomerase VI subunit B [Haloferax gibbonsii ATCC 33959]
Length = 798
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ ++A T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLAATESYSVSGFLQEEFTRVGAKTSDKI 284
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
RQ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRQTDILAPPTDCLSPISADLVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELRSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ ST +PF K+ + D I V+ AI++ +LKS + ++ R Q+R++
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKR---RSLQKRRK 667
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448609018|ref|ZP_21660297.1| DNA topoisomerase VI subunit B [Haloferax mucosum ATCC BAA-1512]
gi|445747395|gb|ELZ98851.1| DNA topoisomerase VI subunit B [Haloferax mucosum ATCC BAA-1512]
Length = 798
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 117/212 (55%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGAEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARL------ELREPGLDEPLKFERATDQLPEQTTEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ ++ T ++ FLQ EF +G + ++
Sbjct: 253 LLKMLTATESYSISGFLQEEFTRVGSKTSSKI 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELKSEGSIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYNLDQPGGSGMPSGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ ST +PF K+ + D I V+ AI++ +LKS + ++ R Q+R++
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKR---RSLQKRRK 667
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448727754|ref|ZP_21710103.1| DNA topoisomerase VI subunit B [Halococcus morrhuae DSM 1307]
gi|445789740|gb|EMA40419.1| DNA topoisomerase VI subunit B [Halococcus morrhuae DSM 1307]
Length = 793
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 114/212 (53%), Gaps = 10/212 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ +++P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 80 YYRLVVEDNGPGITTEELPKVFGKLLYGSRFHKREQARGQQGIGISAAVLYSQLTSGKPA 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P V + E DR HG I++ +E N R ++
Sbjct: 140 KITSRTQGGE-AKYFELIIDTDSNEPEVSVDETT-TWDRTHGTRIELEMEANMRA-RGQL 196
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E N + R TD +P E + HP V+L +
Sbjct: 197 RDYVKHTAVVNPHARI------ELREPNGEFKAERATDQLPAETEEIRPHPHGVELGTLL 250
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ FLQ EF +G A +I
Sbjct: 251 KMLEATDSYSVSGFLQGEFTRVGTKTATNVIA 282
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP +R G+ KE D A+ + A V G PFIVEAG++ GG +G +
Sbjct: 499 PPTDCLSPITADLVRSGLEKEFDADFYASATRDAGVHGGDPFIVEAGIAYGGDLPAEGSV 558
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + + ST +P
Sbjct: 559 ELLRFANRVPLVYQRGA-CATTDVLKGIGWRNYGLDQPGGSGMPNGPAVIMIHVASTNVP 617
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ I + I ++ A+++ +LKS + ++ +++QE++ L
Sbjct: 618 FTSESKDAIA-NIPAIEDEIELAVREAARELKSYLNKRRSMQQRQEKQDVL 667
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 19 NESALKQKSP--AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
+E A Q+S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + I I
Sbjct: 15 DELAASQRSISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGHLPDIYIEI 74
Query: 77 EEIG 80
EE+G
Sbjct: 75 EEVG 78
>gi|292655721|ref|YP_003535618.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
gi|448289707|ref|ZP_21480870.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
gi|291371984|gb|ADE04211.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
gi|445581224|gb|ELY35585.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
Length = 798
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKI 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448624638|ref|ZP_21670586.1| DNA topoisomerase VI subunit B [Haloferax denitrificans ATCC 35960]
gi|445749843|gb|EMA01285.1| DNA topoisomerase VI subunit B [Haloferax denitrificans ATCC 35960]
Length = 798
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARL------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLRKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448603023|ref|ZP_21656844.1| DNA topoisomerase VI subunit B [Haloferax sulfurifontis ATCC
BAA-897]
gi|445746219|gb|ELZ97681.1| DNA topoisomerase VI subunit B [Haloferax sulfurifontis ATCC
BAA-897]
Length = 798
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARL------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLRKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448540822|ref|ZP_21623743.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-646]
gi|448549125|ref|ZP_21627901.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-645]
gi|448555701|ref|ZP_21631630.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-644]
gi|445708975|gb|ELZ60810.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-646]
gi|445713814|gb|ELZ65589.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-645]
gi|445717224|gb|ELZ68942.1| DNA topoisomerase VI subunit B [Haloferax sp. ATCC BAA-644]
Length = 798
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 284
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
RQ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRQTDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448595854|ref|ZP_21653301.1| DNA topoisomerase VI subunit B [Haloferax alexandrinus JCM 10717]
gi|445742308|gb|ELZ93803.1| DNA topoisomerase VI subunit B [Haloferax alexandrinus JCM 10717]
Length = 798
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELRSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448570958|ref|ZP_21639469.1| DNA topoisomerase VI subunit B [Haloferax lucentense DSM 14919]
gi|445722876|gb|ELZ74527.1| DNA topoisomerase VI subunit B [Haloferax lucentense DSM 14919]
Length = 798
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 252
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 253 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 496 MRETDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 555
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 556 ELRSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 614
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 615 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 673
Query: 561 R 561
R
Sbjct: 674 R 674
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|399574435|ref|ZP_10768194.1| DNA topoisomerase vi, b subunit [Halogranum salarium B-1]
gi|399240267|gb|EJN61192.1| DNA topoisomerase vi, b subunit [Halogranum salarium B-1]
Length = 806
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 118/214 (55%), Gaps = 13/214 (6%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ +P +FG++L G+++ +Q+RG+ G+G A+++S++++G
Sbjct: 81 YYKLIVEDNGPGITKAQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKAA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK-DRWHGAEIQVVIEGNWTTYRSK 268
+I+S + + +L ID N P + E RE DR HG I++ +E N R +
Sbjct: 141 KITSRTQGSADAQYFELIIDTDTNEPEIK--EARETSWDRSHGTRIELEMEANMRA-RQQ 197
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLL 326
+ Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 198 LHDYIKHTAVVNPHARL------ELREPGLEEPLKFERATDQLPAETEEIRPHPHGVELG 251
Query: 327 LIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+ ++ T ++ FLQ EF +GK A++++
Sbjct: 252 TLIKMLQATESYSVSGFLQEEFTRVGKKTADKVV 285
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 383 RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAG 442
++ + R+ P CLSP + G+ KE D A + A+V G PFIVEAG
Sbjct: 499 QLLEAMRETDILAPPTNCLSPISAELVEAGLRKEFDADFYAAATRDAEVHGGDPFIVEAG 558
Query: 443 VSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDK 495
++ GG +G +++ RFANR+PL++++G T +KRI W +Y ++Q
Sbjct: 559 IAYGGDLKAEGSVDLLRFANRVPLVYQRGA-CATTDVVKRIGWRNYGLDQPGGSGMPNGP 617
Query: 496 IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI--VRKIQDREQQ 553
+ + + ST +PF K+ + + I ++ AI++ +LKS + R ++ R Q+
Sbjct: 618 AVIMIHVASTNVPFTSESKDALA-NIPAIEDEIELAIREAARELKSYLNKRRSMEKRRQK 676
Query: 554 E 554
+
Sbjct: 677 Q 677
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGLAPDIYVEIAEAG 79
>gi|433426700|ref|ZP_20406923.1| DNA topoisomerase VI subunit B [Haloferax sp. BAB2207]
gi|432196865|gb|ELK53286.1| DNA topoisomerase VI subunit B [Haloferax sp. BAB2207]
Length = 790
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 73 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 132
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 133 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 190
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDLLL 327
Y+ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 191 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLPKQTKEIRPHPHGVELGT 244
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+ +++ T ++ FLQ EF +G ++++
Sbjct: 245 LLKMLSATESYSVSGFLQEEFTRVGAKTSDKV 276
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 488 MRETDILAPPTDCLSPISAELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 547
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 548 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 606
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ + D I V+ AI++ LKS + ++ ++++E++ L
Sbjct: 607 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARDLKSYLSKRRSLQKRREKQDVLG 665
Query: 561 R 561
R
Sbjct: 666 R 666
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 15 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 71
>gi|409728294|ref|ZP_11271161.1| DNA topoisomerase VI subunit B [Halococcus hamelinensis 100A6]
gi|448721867|ref|ZP_21704410.1| DNA topoisomerase VI subunit B [Halococcus hamelinensis 100A6]
gi|445790939|gb|EMA41589.1| DNA topoisomerase VI subunit B [Halococcus hamelinensis 100A6]
Length = 790
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 10/212 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 80 YYRLVVEDNGPGITAEQLPKVFGKLLYGSRFHKREQARGQQGIGISAAVLYSQLTSGKPA 139
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S F +L ID N P V + E DR HG I++ ++ N R ++
Sbjct: 140 KITSRTGGGEAKYF-ELIIDTDTNEPEVSVEETT-TWDRPHGTRIELEMDANMRA-RGQL 196
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ AV+ P+A+ E+ E + R TD +P E + HP V+L +
Sbjct: 197 RDYIKHTAVVNPHARI------ELREPGGEFKAERATDDLPAETEEIRPHPHGVELGTLL 250
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ +T +L FLQ EF +GK A +I
Sbjct: 251 KMLDDTDSYSLSGFLQEEFTRVGKKTAANVIA 282
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP +R G+ KE D A+ + A V G PFIVEAG++ GG+ +G +
Sbjct: 495 PPTDCLSPITAELVRSGLEKEFDADFYASATRDAGVHGGDPFIVEAGIAYGGELGAEGNV 554
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 555 QLMRFANRVPLVYQRGA-CATTDVIKSIGWRNYGLDQPGGSGMPNGPCVIMVHVASTNVP 613
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ I + I ++ A+++ +LKS + +K Q +Q+ +K+++
Sbjct: 614 FTSESKDAIA-NVPGIEDEIELAVREAARELKSYL-KKRQSMQQRRQKQDV 662
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP + + IEE+G
Sbjct: 25 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGHLPDIYVEIEEVG 78
>gi|354611443|ref|ZP_09029399.1| Type 2 DNA topoisomerase 6 subunit B [Halobacterium sp. DL1]
gi|353196263|gb|EHB61765.1| Type 2 DNA topoisomerase 6 subunit B [Halobacterium sp. DL1]
Length = 801
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 114/216 (52%), Gaps = 13/216 (6%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P+
Sbjct: 81 YYTLVVEDNGPGITKEQIPKIFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPV 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK----RENKDRWHGAEIQVVIEGNWTTY 265
I S + N + +L ID N P + + ++ N HG I++ +E N
Sbjct: 141 RIESRTQDSNVSHYYELIIDTDTNEPEIDMEKELSAAESNLRGTHGTRIEMDMEANMRA- 199
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVD 324
R ++ Y++ AV+ P+A+ E+ E I+ R +P E + HP V+
Sbjct: 200 RGQLHDYIKHTAVVNPHARI------ELQEPKGEIKAERAEGAGLPKETEEIRPHPHGVE 253
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
L + ++ +T ++ FLQ EF +GK A+ ++
Sbjct: 254 LGTLIKMLDDTDSHSVSGFLQGEFTRVGKKTADNIV 289
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CLSP + G+ KE + A + A V G PFIVEAG++ GG+ + + G+
Sbjct: 507 PPTSCLSPIDADLVEAGLRKEFDAEFYAASTRDADVHGGDPFIVEAGIAYGGELEAEGGV 566
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G +T +K I W +Y ++Q Q + V + ST +P
Sbjct: 567 DLMRFANRVPLVYQRGACAITEV-VKDIGWRNYNLDQPGSSGLPQGPAVIMVHVASTNVP 625
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
F K+ + I ++ A+++ +LKS + +K R++Q+++
Sbjct: 626 FTSESKDAVA-HVPAIEDEIELAVREAARELKSFLKKKRSMRKRQQKQ 672
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + + IE+ G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDLLVEIEDAG 79
>gi|257051218|ref|YP_003129051.1| DNA topoisomerase VI subunit B [Halorhabdus utahensis DSM 12940]
gi|256689981|gb|ACV10318.1| DNA topoisomerase VI, B subunit [Halorhabdus utahensis DSM 12940]
Length = 807
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ + Q RG+ G+G A+++S++++G P
Sbjct: 77 YYRLVIEDNGPGITREQLPKVFGKLLYGSRFHKREQNRGQQGIGISAAVLYSQLTSGKPA 136
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID N P + + E DR HG I+V +E N R ++
Sbjct: 137 KITSRTKGSEEAHYFELIIDTDTNEPEIDVDETT-TWDRPHGTRIEVELEANLRA-RQQL 194
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKH---HPSSVD 324
Y++ AV+ P+A+ F E N+ +F R +P ETK HP V+
Sbjct: 195 HDYIKHTAVVNPHARIEFH------EPNMAEPAKFERVEGA--DLPAETKEIRPHPHGVE 246
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
L + ++ T ++ FLQ EF +G +++++
Sbjct: 247 LGTLLKMLEATDSYSVSGFLQGEFTRVGGKTSDKVL 282
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 345 QHEFVNIGKSLAERL------IGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG 398
+++ IG++ E + I E P+ P + + + + R+ P
Sbjct: 451 EYDDATIGETARENVTTEIWAIMETVPDDVPNVTEIADNRDVAADLLEAMRETDIISPPT 510
Query: 399 GCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIF 457
CL+P E + G+ KE D A + A V G PFIVEAG++ GG+ + G +++
Sbjct: 511 DCLAPISERLVEEGLRKEFDADFYAASTRDASVHGGDPFIVEAGIAYGGELDEGGPVDVM 570
Query: 458 RFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKG 511
RFANR+PL++++G T +K INW +Y ++Q + V + + ST +PF
Sbjct: 571 RFANRVPLVYQRGA-CATTDVVKTINWRNYGLDQPGGSGIPKGPAVVMIHVASTNVPFTS 629
Query: 512 TGKEYIGDDTKEIASAVKSAIQQCCIQLKS 541
K+ I + EI ++ AI++ +LKS
Sbjct: 630 ESKDAIA-NIPEIEDEIELAIREAARELKS 658
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
+Q S AEFF +NK++ GFD+ ++L T V+E V+NSLD+ E P V + IE++G+
Sbjct: 19 RQISIAEFFEKNKHMLGFDSGARALVTAVKEGVDNSLDACEEADIFPDVYVEIEDVGE 76
>gi|448678346|ref|ZP_21689353.1| DNA topoisomerase VI subunit B [Haloarcula argentinensis DSM 12282]
gi|445772333|gb|EMA23378.1| DNA topoisomerase VI subunit B [Haloarcula argentinensis DSM 12282]
Length = 796
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 115/214 (53%), Gaps = 10/214 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSR--RTDVMPPVPVETKHHPSSVDLLL 327
Y++ AV+ P+A+ F + +++F R R D +P E + HP V+L
Sbjct: 199 RDYIQDTAVVNPHARIEFDEPG----LDESLKFERAERAD-LPDETEEIRPHPHGVELGT 253
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
+ ++ T ++ F+Q EF +G A+ +I
Sbjct: 254 LLKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + + R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADDRDTASELLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|322370369|ref|ZP_08044928.1| DNA topoisomerase VI subunit B [Haladaptatus paucihalophilus DX253]
gi|320550077|gb|EFW91732.1| DNA topoisomerase VI subunit B [Haladaptatus paucihalophilus DX253]
Length = 802
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 113/216 (52%), Gaps = 9/216 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +D G G+ + IP +FG++L G+++ + Q+RG+ G+G A+++S++++G P
Sbjct: 77 YYRLIVEDEGPGITREQIPKVFGKLLYGSRFHKREQSRGQQGIGISAAVLYSQLTSGKPA 136
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDR----WHGAEIQVVIEGNWTTY 265
+I+S + + + +L ID N P + R HG I++ +E N
Sbjct: 137 KITSKPKGSDRQRYFELIIDTDENEPEIQSESDTPPVGRELVGTHGTRIELEMEANMRA- 195
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVD 324
R +++ Y++ AV+ P+A+ +F+ E + F R +P E + HP V+
Sbjct: 196 RQQLIRYIKHTAVVNPHAKIVFEEPG--MEDGEEMVFERADGASLPAETEEIRPHPHGVE 253
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
L + ++ T ++ FLQ EF +GK +E +I
Sbjct: 254 LGTLLKMLGSTDSHSISGFLQEEFTRVGKKTSENVI 289
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 16/228 (7%)
Query: 345 QHEFVNIGKSLAERLIGEMG------PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG 398
+ E V IG++ E ++ + P+ PK+ + + ++ P
Sbjct: 450 EREDVTIGETARENVVDAIWDSMVTVPDDVPKVREVGDSRDIASELLDAMKETDIISPPT 509
Query: 399 GCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIF 457
CLSP + G+ KE D A + A V G PFIVEAG++ GG +G +
Sbjct: 510 NCLSPITADLVEAGLRKEYDADFYAAATRDADVHGGDPFIVEAGIAYGGDLQAEGSAELL 569
Query: 458 RFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK------IGVFVSIVSTKIPFKG 511
RFANR+PL++++G T +K I W +Y ++Q + + + V + ST +PF
Sbjct: 570 RFANRVPLVYQRGA-CATTDVVKSIGWRNYNLDQPGGRGVPNGPVVIMVHVASTNVPFTS 628
Query: 512 TGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
K+ I + EI ++ AI++ +LKS + ++ Q +++++K+N+
Sbjct: 629 ESKDAIA-NVPEIEDEIELAIREAARELKSYLNKR-QSLKKRQKKQNV 674
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
+Q S AEFF +NK++ GFD+ + L T V+E V+N+LD++E P V + IEE+G
Sbjct: 19 RQISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDASEEARLKPFVRVKIEEVG 75
>gi|448627573|ref|ZP_21672039.1| DNA topoisomerase VI subunit B [Haloarcula vallismortis ATCC 29715]
gi|445758881|gb|EMA10177.1| DNA topoisomerase VI subunit B [Haloarcula vallismortis ATCC 29715]
Length = 796
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARIEF----DEPGLDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + ++ R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADDRDTASQLLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRQSMQQRREKQDKLA 672
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|448640228|ref|ZP_21677282.1| DNA topoisomerase VI subunit B [Haloarcula sinaiiensis ATCC 33800]
gi|445762018|gb|EMA13252.1| DNA topoisomerase VI subunit B [Haloarcula sinaiiensis ATCC 33800]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARVEFDEPG----LDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + ++ R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADDRDTASQLLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|448649277|ref|ZP_21679990.1| DNA topoisomerase VI subunit B [Haloarcula californiae ATCC 33799]
gi|445773921|gb|EMA24950.1| DNA topoisomerase VI subunit B [Haloarcula californiae ATCC 33799]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARVEFDEPG----LDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + ++ R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADDRDTASQLLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|448667079|ref|ZP_21685680.1| DNA topoisomerase VI subunit B [Haloarcula amylolytica JCM 13557]
gi|445770601|gb|EMA21660.1| DNA topoisomerase VI subunit B [Haloarcula amylolytica JCM 13557]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDDAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARIEF----DEPGLDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK+A + ++ R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVADIADDRDTASQLLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRQSMQQRREKQDKLA 672
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|55377343|ref|YP_135193.1| DNA topoisomerase VI subunit B [Haloarcula marismortui ATCC 43049]
gi|74520118|sp|Q5V4R5.1|TOP6B_HALMA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|55230068|gb|AAV45487.1| type II DNA topoisomerase VI subunit B [Haloarcula marismortui ATCC
43049]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARVEFDEPG----LDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A V G PFIVEAG++ GG
Sbjct: 495 MRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAASTRDASVHGGDPFIVEAGIAYGG 554
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL++++G T +K I W +Y ++Q + + V
Sbjct: 555 ELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIRWRNYNLDQPGGSGIPKGPAVIMV 613
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ I + E+ ++ AI++ +LKS + ++ ++++E++ L+
Sbjct: 614 HVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAARELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|344211461|ref|YP_004795781.1| DNA topoisomerase VI subunit B [Haloarcula hispanica ATCC 33960]
gi|343782816|gb|AEM56793.1| DNA topoisomerase VI subunit B [Haloarcula hispanica ATCC 33960]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARIEF----DEPGLDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + ++ R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADDRDTASQLLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELEAEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRRSMQQRREKQDKLA 672
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|448688769|ref|ZP_21694506.1| DNA topoisomerase VI subunit B [Haloarcula japonica DSM 6131]
gi|445778639|gb|EMA29581.1| DNA topoisomerase VI subunit B [Haloarcula japonica DSM 6131]
Length = 796
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARIEF----DEPGLDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
PE PK++ + + R+ P CLSP + G+ KE D A
Sbjct: 472 PEEPPKVSDIADNRDTASELLSAMRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAA 531
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +K I
Sbjct: 532 STRDASVHGGDPFIVEAGIAYGGELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIR 590
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + V + ST +PF K+ I + E+ ++ AI++
Sbjct: 591 WRNYNLDQPGGSGIPKGPAVIMVHVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAAR 649
Query: 538 QLKSKIVRKIQDREQQERKRNLS 560
+LKS + ++ ++++E++ L+
Sbjct: 650 ELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>gi|448414639|ref|ZP_21577652.1| DNA topoisomerase vi, b subunit, partial [Halosarcina pallida JCM
14848]
gi|445681748|gb|ELZ34176.1| DNA topoisomerase vi, b subunit, partial [Halosarcina pallida JCM
14848]
Length = 538
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ +PK++ + + + R+A P CLSP + G+ KE D A
Sbjct: 213 PDDAPKVSEAADDRDVASELLEAMREADILAPPTNCLSPITAELVEAGLRKEYDADFYAA 272
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G +++ RFANR+PL++++G T +KRI
Sbjct: 273 ATRDAEVHGGDPFIVEAGIAYGGELSAEGSVDLLRFANRVPLVYQRGA-CATTDVVKRIG 331
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + V + ST +PF K+ + + EI ++ AI++
Sbjct: 332 WRNYGLDQPGGSGMPSGPAVIMVHVASTNVPFTSESKDALA-NIPEIEDEIELAIREAAR 390
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 391 ELKSYLNKRRSMQKRREKQDVLGR 414
>gi|448529320|ref|ZP_21620527.1| DNA topoisomerase VI subunit B, partial [Halorubrum hochstenium
ATCC 700873]
gi|445709413|gb|ELZ61242.1| DNA topoisomerase VI subunit B, partial [Halorubrum hochstenium
ATCC 700873]
Length = 267
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 107/192 (55%), Gaps = 12/192 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGL 207
+YR+ +DNG G+ + +P +FG++L G+++ + Q+RG+ G+G A+++S++++G
Sbjct: 79 GDYYRLVIEDNGPGITKEQLPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGQ 138
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
P +I+S + + + +L ID N P + E+ DR HG I++ +E N R
Sbjct: 139 PAKITSRPKGQSRAQYFELIIDTDTNEPEIQTDEET-TWDRPHGTRIELEMEANMRA-RQ 196
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMPPVPVETKHHPSSVDL 325
++ Y++ AV+ P+A+ E+ E + ++F R TD +P E + HP V+L
Sbjct: 197 QLHDYVKHTAVVNPHARL------ELREPGLDEPMKFERATDELPAETHEIRPHPHGVEL 250
Query: 326 -LLIKGLIAETS 336
LIK L A S
Sbjct: 251 GSLIKMLEATES 262
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGYLPDIYIEIEEVG 79
>gi|435848697|ref|YP_007310947.1| DNA topoisomerase VI, subunit B [Natronococcus occultus SP4]
gi|433674965|gb|AGB39157.1| DNA topoisomerase VI, subunit B [Natronococcus occultus SP4]
Length = 1385
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 183 LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK 242
+K +RG+ G+G A+++S++++G P +I+S + + + +L +D N P + + E+
Sbjct: 683 VKNSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSSEAEYFELIVDTDENEPEISV-EE 741
Query: 243 RENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRF 302
+ DR HG I++ +EGN R ++ Y++ AV+ P+A+ E+ E N +F
Sbjct: 742 TTSWDRPHGTRIELEMEGNMRA-RQQLHDYIKHTAVVNPHARL------ELKEPNAHFKF 794
Query: 303 SRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
R TD +P E + HP V+L + +++ T T+ FLQ EF +GK A+ +I
Sbjct: 795 ERGTDQLPEETEEIRPHPHGVELGTVIKMLSATDSQTISGFLQEEFTRVGKKTADSVI 852
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP + +R G+ KE D A + A+V G PFIVEAG++ GG +G
Sbjct: 1087 PPTRCLSPITDDLIRAGLEKEFDADFYAAATRDAEVHSGDPFIVEAGIAYGGDIPAEGSA 1146
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
++ RFANR+PL++++G T +K I W +Y ++Q + V + ST +P
Sbjct: 1147 DVMRFANRVPLVYQRGA-CATTDVVKSIGWRNYGLDQPGGSGLPNGPAVIMVHVASTNVP 1205
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
F K+ + + I ++ AI++ +LKS + K + E++ +K+N+
Sbjct: 1206 FTSESKDAVA-NVPAIEDEIELAIREAARELKS-FLNKRRSMEKRRKKQNV 1254
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 13 KSPKTPNESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP 70
+ P E A Q+ S AEFF +NK++ GFD+ + L T V+E V+N+LD+AE LP
Sbjct: 10 EEPGIAEELAESQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILP 69
Query: 71 VVEITIEEIG 80
+ + I+E G
Sbjct: 70 DIYVEIQESG 79
>gi|386876528|ref|ZP_10118637.1| putative DNA topoisomerase VI, B subunit, partial [Candidatus
Nitrosopumilus salaria BD31]
gi|386805663|gb|EIJ65173.1| putative DNA topoisomerase VI, B subunit, partial [Candidatus
Nitrosopumilus salaria BD31]
Length = 258
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD---P 396
L FL F IG + A + G F P+ + ++T+Q++V + + K+DD P
Sbjct: 98 LTTFLTKRFQRIGPTTALKFAEFAG--FKPEKRMGTMTNQELVNLSDSLQ--KYDDFLAP 153
Query: 397 SGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
CL+P GE L GI K +PD A A + G PFI+E G++ GG G ++
Sbjct: 154 DPSCLAPLGEAPLEKGIKKFFNPDFTAVVQRPASAYSGFPFIIEMGIAYGGDIKTGGPHV 213
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKI 489
+R+ANRIPLL+++G DVV + + +W YK+
Sbjct: 214 YRYANRIPLLYDEGSDVVLK-VVNDTDWGRYKV 245
>gi|313126397|ref|YP_004036667.1| DNA topoisomerase vi, b subunit [Halogeometricum borinquense DSM
11551]
gi|312292762|gb|ADQ67222.1| DNA topoisomerase VI, B subunit [Halogeometricum borinquense DSM
11551]
Length = 800
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 117/221 (52%), Gaps = 11/221 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R +Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S+++
Sbjct: 76 RESGDYYTLIVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT 135
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHL-HE---KRENKDRWHGAEIQVVIEG 260
+G P +++S + + + +L ID N P + + HE + HG I+V +E
Sbjct: 136 SGKPAKVTSRTQGDSAAQYFELIIDTDTNEPEIQVEHELAPGESDLSPTHGTRIEVEMEA 195
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHH 319
N R ++ Y++ AV+ P+A + V + + +R+ R +P E + H
Sbjct: 196 NMRA-RQQLHDYVKHTAVVNPHA----RLVLDEPGLDEPLRYERVEGAGLPDETEEIRPH 250
Query: 320 PSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
P V+L + +++ T ++ FLQ EF +G A++++
Sbjct: 251 PHGVELGTLIKMLSRTESYSVSGFLQEEFTRVGAKTADKIL 291
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
N+ +SL E + P+ PK+ + + + R+A P CLSP + +
Sbjct: 462 NVTESLWE--VMRTVPDDVPKVRDVADDRDTASELLEGMREADILAPPTNCLSPITDELV 519
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
G+ KE D A + A+V G PFIVEAG++ GG +G +++ RFANR+PL+++
Sbjct: 520 EAGLRKEYDADFYAAATRDAEVHGGDPFIVEAGIAYGGDLQSEGSVDLLRFANRVPLVYQ 579
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G T +KRI W +Y ++Q + + V + ST +PF K+ + +
Sbjct: 580 RGA-CATTDVVKRIGWRNYGLDQPGGSGMPKGPAVIMVHVASTNVPFTSESKDALA-NIP 637
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
EI ++ AI++ +LKS + ++ R Q+R++
Sbjct: 638 EIEDEIELAIREASRELKSYLNKR---RSMQKRRK 669
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIKPDISVEIRESG 79
>gi|335433681|ref|ZP_08558499.1| DNA topoisomerase VI subunit B [Halorhabdus tiamatea SARL4B]
gi|334898484|gb|EGM36590.1| DNA topoisomerase VI subunit B [Halorhabdus tiamatea SARL4B]
Length = 1377
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 345 QHEFVNIGKSLAERLIGEMG------PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG 398
+++ IG++ E ++ E+ P+ P ++ + + + R+ P
Sbjct: 1021 EYDDATIGETARENVLEEIWGVMATVPDDVPNVSTLADDRDAAAELLEAMRETDIIAPPT 1080
Query: 399 GCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIF 457
GCL+P E + G+ KE D A + A V G PFIVEAG++ GG+ + G +++
Sbjct: 1081 GCLAPISERLVEEGLRKEFDADFYAASTRDASVHGGDPFIVEAGIAYGGELEEGGPVDVM 1140
Query: 458 RFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKG 511
RFANR+PL++++G T +K INW +Y ++Q V + + ST +PF
Sbjct: 1141 RFANRVPLVYQRGA-CATTDVVKTINWRNYGLDQPGGSGIPNGPAVVMIHVASTNVPFTS 1199
Query: 512 TGKEYIGDDTKEIASAVKSAIQQCCIQLKS 541
K+ I + EI ++ AI++ +LKS
Sbjct: 1200 ESKDAIA-NIPEIEDEIELAIREAARELKS 1228
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 175 VLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNI 234
V++ +K +RG+ G+G A+++S++++G P +I+S + + +L ID N
Sbjct: 671 VVNDGALSVKNSRGQQGIGISAAVLYSQLTSGKPAKITSRTKGSEEAHYFELIIDTDTNE 730
Query: 235 PHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVA 294
P + + E DR HG I++ +E N R ++ Y++ AV+ P+A+ F
Sbjct: 731 PEIDVDETT-AWDRPHGTRIELELEANLRA-RQQLHDYIKHTAVVNPHARIEFH------ 782
Query: 295 EKNVT--IRFSRRTDV-MPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNI 351
E N+ +F R +P E + HP V+L + ++ T ++ FLQ EF +
Sbjct: 783 EPNMAEPAKFERVEGADLPAETEEIRPHPHGVELGTLLKMLEATDSYSVSGFLQGEFTRV 842
Query: 352 GKSLAERLI 360
G +E+++
Sbjct: 843 GGKTSEKVL 851
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGK 81
+Q S AEFF +NK++ GFD+ ++L T V+E V+NSLD+ E P V + IE++G+
Sbjct: 19 RQISIAEFFEKNKHMLGFDSGARALVTAVKEGVDNSLDACEEADIFPDVYVEIEDVGE 76
>gi|242399084|ref|YP_002994508.1| Type 2 DNA topoisomerase 6 subunit B [Thermococcus sibiricus MM
739]
gi|259534019|sp|C6A3G4.1|TOP6B_THESM RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|242265477|gb|ACS90159.1| Type 2 DNA topoisomerase 6 subunit B [Thermococcus sibiricus MM
739]
Length = 566
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 104/190 (54%), Gaps = 5/190 (2%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + F+ F P L P GE N+ G+ L P+ V + + +V+
Sbjct: 335 KKLTWHEAEEIVEAFKYMTFLAPPTHGLRPIGEENIEKGLTGILRPEFVTSVTRPPKVYR 394
Query: 434 GH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT 492
G PF VE G++ GG ++ G ++ R+ANR+PLLF+ G V+T +A + I+W Y+++
Sbjct: 395 GGIPFQVEVGLAFGG-ELSSGFDLLRYANRVPLLFDAGSCVIT-SAARNIDWKRYRVDDV 452
Query: 493 -QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
+ + + V++VS +P+ TGK+ + ++ +EI ++ A+ +L + K +
Sbjct: 453 DRAPLALLVNVVSVHVPYTSTGKQSVANE-EEIYEEIRLAVMDVARRLAKYLGGKHRKLY 511
Query: 552 QQERKRNLSR 561
Q +R++ L +
Sbjct: 512 QVKRRKTLEK 521
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 74 YKIIVEDNGPGIPEKFIAHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 133
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
I +S I + ID+ +N + K N W G I++ V + + + +
Sbjct: 134 IITSTGEEEIIE-AWVGIDVDKNEGKIFKKIKHPNPTGWRGTRIEMEVKDVRYIRSKQGV 192
Query: 270 LHYMRQMAVITPYAQFLF 287
Y++ A+ P+A F
Sbjct: 193 YWYLKLTAIANPHAHIEF 210
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP V + IEE+G
Sbjct: 13 FKIQSVSEFFRRNAAMLGYTGKLRSLTTLIHEAVTNSLDACEEAGILPYVRVEIEELGTE 72
Query: 83 KFNSMI 88
+ ++
Sbjct: 73 HYKIIV 78
>gi|448286241|ref|ZP_21477475.1| DNA topoisomerase vi, b subunit, partial [Halogeometricum
borinquense DSM 11551]
gi|445575074|gb|ELY29556.1| DNA topoisomerase vi, b subunit, partial [Halogeometricum
borinquense DSM 11551]
Length = 477
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
N+ +SL E + P+ PK+ + + + R+A P CLSP + +
Sbjct: 139 NVTESLWE--VMRTVPDDVPKVRDVADDRDTASELLEGMREADILAPPTNCLSPITDELV 196
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
G+ KE D A + A+V G PFIVEAG++ GG +G +++ RFANR+PL+++
Sbjct: 197 EAGLRKEYDADFYAAATRDAEVHGGDPFIVEAGIAYGGDLQSEGSVDLLRFANRVPLVYQ 256
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G T +KRI W +Y ++Q + + V + ST +PF K+ + +
Sbjct: 257 RGA-CATTDVVKRIGWRNYGLDQPGGSGMPKGPAVIMVHVASTNVPFTSESKDALA-NIP 314
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
EI ++ AI++ +LKS + ++ R Q+R++
Sbjct: 315 EIEDEIELAIREASRELKSYLNKR---RSMQKRRK 346
>gi|15790023|ref|NP_279847.1| DNA topoisomerase VI subunit B [Halobacterium sp. NRC-1]
gi|169235746|ref|YP_001688946.1| DNA topoisomerase VI subunit B [Halobacterium salinarum R1]
gi|13124611|sp|Q9HR31.1|TOP6B_HALSA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|229558491|sp|B0R4D3.1|TOP6B_HALS3 RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
gi|10580449|gb|AAG19327.1| DNA topoisomerase VI subunit B [Halobacterium sp. NRC-1]
gi|167726812|emb|CAP13598.1| DNA topoisomerase VI subunit B [Halobacterium salinarum R1]
Length = 804
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P+
Sbjct: 82 YYTLIVEDNGPGITNAQIPKIFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPV 141
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHV----HLHEKRENKDRWHGAEIQVVIEGNWTTY 265
I S + + +L ID N P + + + + HG I++ ++ N
Sbjct: 142 RIESRTQDSETANVYELIIDTDTNEPEISAETEVSAAKSDLRGTHGTRIEMALDANMRA- 200
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH---HPSS 322
R ++ Y++ AV+ P+A+ E+ E ++ R + +P ET HP
Sbjct: 201 RGQLHDYIKHTAVVNPHARI------ELQEPGGELKSERAEEA--SLPAETDEILPHPHG 252
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
V+L + ++AET ++ FLQ EF +G A +I
Sbjct: 253 VELGTLIKMLAETDSHSVSGFLQSEFTRVGSKTATGII 290
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CLSP L G+ E D A + A V G PFIVEAG++ GG D + G+
Sbjct: 505 PPTSCLSPIEADQLEAGLRTEFDADFYAAATRDADVHGGDPFIVEAGIAYGGDIDSEGGV 564
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T + I W +Y ++Q Q + V + ST +P
Sbjct: 565 QLMRFANRVPLVYQRGA-CATTDVLGDIGWRNYNLSQPGGSGLPQGPAVIMVHVASTNVP 623
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
F K+ I + EI + ++ A+++ +LKS + ++ R++Q+++
Sbjct: 624 FTSESKDAIA-NVPEIEAEIELAVREAARELKSFLQKRQSMRKRQQKQ 670
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + + I E G+
Sbjct: 24 REISVAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEISE-GRDY 82
Query: 84 FNSMI 88
+ ++
Sbjct: 83 YTLIV 87
>gi|296109554|ref|YP_003616503.1| DNA topoisomerase VI, B subunit [methanocaldococcus infernus ME]
gi|295434368|gb|ADG13539.1| DNA topoisomerase VI, B subunit [Methanocaldococcus infernus ME]
Length = 656
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
++LT ++ I + + +F P L P G N+ + + L PD V + + + +
Sbjct: 431 RALTWEEAELIVRCLQNMEFKAPPTSGLRPIGAENIEKSLKELLKPDFVKAITRNPKTYR 490
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PFIVE G++ GG+ +QG + I RFAN +PLL++ +TR A+K INW Y
Sbjct: 491 GGIPFIVEVGLAYGGEAGRQGDEGRKMEIMRFANHVPLLYDASACGITR-AVKSINWKRY 549
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
I + I VFV++VST IP+ GK+ I + +EI + ++ A+ C +L+ +
Sbjct: 550 GIKEDAP-ITVFVNLVSTFIPYTSAGKQAIACGEHENEEIYNEIRHALMICARELEKYLS 608
Query: 545 R 545
R
Sbjct: 609 R 609
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
YRV +DNG G+P + +P +FG++L+G+K Q+RG+ G+GA L++S+++TG P++
Sbjct: 69 YRVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRHIQSRGQQGIGAAGVLLFSQITTGKPLK 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE------GNWTT 264
+ +S+ I K+ +D+ +N + E + K W G ++ + G +
Sbjct: 129 VITSLGDGK-IYEMKVKMDVEKN--EGKIVEMKVKKGNWRGTRVEGEFKEVSYNRGEYGP 185
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS--S 322
Y Y+R++++ TP+A+ + K + + F R D +P P E K HP +
Sbjct: 186 Y-----EYLRRISIATPHAKIILK------DPYGEVVFDRVIDEIPTKPKELKPHPYGLT 234
Query: 323 VDLLL 327
VD LL
Sbjct: 235 VDELL 239
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +S+ T V ELV NSLD+ E LP V++ IE++G
Sbjct: 8 FKEHSVAEFFRKNKHMLGYSGKIRSMTTIVHELVTNSLDACEEALILPEVKVEIEKLGTD 67
Query: 83 KF 84
+
Sbjct: 68 HY 69
>gi|375084291|ref|ZP_09731297.1| DNA topoisomerase VI subunit B [Thermococcus litoralis DSM 5473]
gi|374741051|gb|EHR77483.1| DNA topoisomerase VI subunit B [Thermococcus litoralis DSM 5473]
Length = 567
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 102/188 (54%), Gaps = 5/188 (2%)
Query: 376 LTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 435
LT + I + F+ F P L P GE N+ G++ L P+ V + +V+ G
Sbjct: 337 LTWHEAEEIVEAFKYMTFLAPPTHGLRPIGEENIEKGLLGILKPEFVTAVTRPPKVYRGG 396
Query: 436 -PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ- 493
PF VE G++ GG ++ G ++ R+ANR+PLLF+ G V+T +A + I+W Y+++ +
Sbjct: 397 IPFQVEVGLAFGG-ELSSGFDLLRYANRVPLLFDAGSCVIT-SAARNIDWKRYRVDDLER 454
Query: 494 DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQ 553
+ + V+++S +P+ TGK+ + + +EI ++ A+ + +L + K + Q
Sbjct: 455 TPLVLLVNVISVHVPYTSTGKQSVASE-EEIYEEIRLAVMEVARRLAKYLGGKHRKLYQV 513
Query: 554 ERKRNLSR 561
+R++ +
Sbjct: 514 KRRKTFEK 521
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 74 YKIIVEDNGPGIPEKFIAHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 133
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S I + ID+ +N + K N W G I++ V E + +
Sbjct: 134 VITSTGGDEIIE-AWVGIDVEKNEGKIFKKIKHPNPTGWRGTRIEMEVKEVRYIRSKQGP 192
Query: 270 LHYMRQMAVITPYAQF 285
Y++ A+ P+A
Sbjct: 193 YWYLKLTAIANPHAHI 208
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +S T + E V NSLD+ E LP V + IEE+G
Sbjct: 13 FKIQSVSEFFRRNAAMLGYTGKLRSFTTLIHEAVTNSLDACEEAGILPYVRVEIEELGNE 72
Query: 83 KFNSMI 88
+ ++
Sbjct: 73 HYKIIV 78
>gi|448562315|ref|ZP_21635354.1| DNA topoisomerase VI subunit B, partial [Haloferax prahovense DSM
18310]
gi|445719519|gb|ELZ71199.1| DNA topoisomerase VI subunit B, partial [Haloferax prahovense DSM
18310]
Length = 492
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
RQ P CLSP + G+ KE D A + A+V G PFIVEAG++ GG
Sbjct: 190 MRQTDILAPPTDCLSPISADLVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGG 249
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL+++QG +T +K I W +Y ++Q + V
Sbjct: 250 ELKSEGKIDLLRFANRVPLVYQQGACTITHV-VKDIGWRNYGLDQPGGSGMPNGPAVLMV 308
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ ST +PF K+ + D I V+ AI++ +LKS + ++ R Q+R++
Sbjct: 309 HVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKR---RSLQKRRK 361
>gi|448591218|ref|ZP_21650897.1| DNA topoisomerase VI subunit B, partial [Haloferax elongans ATCC
BAA-1513]
gi|445733774|gb|ELZ85339.1| DNA topoisomerase VI subunit B, partial [Haloferax elongans ATCC
BAA-1513]
Length = 539
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ R+ P CLSP + G+ KE D A + A+V G PFIVEAG++
Sbjct: 235 EAMRETDILAPPTDCLSPITSELVEAGLKKEFDADFYAAATRDAEVHGGDPFIVEAGIAY 294
Query: 446 GGKDVKQ--GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIG 497
GG D+K +++ RFANR+PL++++G +T +K I W +Y ++Q +
Sbjct: 295 GG-DIKSDGSIDLLRFANRVPLVYQRGACTITH-VVKDIGWRNYGLDQPGGSGMPKGPAV 352
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIV--RKIQDREQQE 554
+ V + ST +PF K+ + D I V+ AI++ +LKS + R +Q R Q++
Sbjct: 353 LMVHVASTNVPFTSESKDALA-DVPAIQDEVELAIREAARELKSYLSKRRSLQKRRQKQ 410
>gi|448529390|ref|ZP_21620528.1| DNA topoisomerase VI subunit B, partial [Halorubrum hochstenium
ATCC 700873]
gi|445709152|gb|ELZ60985.1| DNA topoisomerase VI subunit B, partial [Halorubrum hochstenium
ATCC 700873]
Length = 539
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ PK+ + + + + R P CL+P E + G+ KE D A
Sbjct: 215 PDDPPKVKAIAGSRDAAADLLEAMRTTDILAPPTDCLAPITEELVEAGLRKEYDADFYAA 274
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 275 ATRDADVHGGDPFIVEAGIAYGGEIPSEGSVELLRFANRVPLVYQRGA-CATTDVIKGIG 333
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + EI ++ A+++
Sbjct: 334 WRNYGLDQPGGSGMPNGPAVISIHVASTNVPFTSESKDALA-NVPEIEDEIELAVREAAR 392
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 393 ELKSFLNKRRSMQQRREKQDVLGR 416
>gi|333909967|ref|YP_004483700.1| type 2 DNA topoisomerase 6 subunit B [Methanotorris igneus Kol 5]
gi|333750556|gb|AEF95635.1| Type 2 DNA topoisomerase 6 subunit B [Methanotorris igneus Kol 5]
Length = 656
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + + F PS L P G N+ + L+PD V + + + ++
Sbjct: 432 KELTWEDAEIIVRCLQDMDFIAPSTSGLRPIGAENIEKSLKSLLNPDFVKAITRNPKTYK 491
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +Q + I RFAN +PLLF+ GG +T+ A+K INW Y
Sbjct: 492 GGIPFAVEVAIAYGGDAGRQSDEGKKMEIMRFANHVPLLFDAGGCGLTK-AVKSINWKRY 550
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST +P+ GK+ + ++ +EI + ++ A+ C +L+ +
Sbjct: 551 GLRGEDVPITVFVNLISTHVPYTSAGKQAVACSENENEEIFNEIRQALMICARELEHHLS 610
Query: 545 RKIQDREQQERKR 557
R I+ +++E+KR
Sbjct: 611 R-IRREQEEEKKR 622
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++M+TG P++
Sbjct: 70 YKVIVEDNGPGIPPEFVPKVFGKMLAGSKMHRLVQSRGQQGIGAAGVLLFAQMTTGKPLK 129
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ------VVIEGNWTT 264
I++S I ++ + + +N V H+ R K W G ++ G +
Sbjct: 130 ITTST-GDGVIHEMEIKMSVEKNEGEVVSHKTR--KGNWRGTRVEGEFKEVTYNRGEYGP 186
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y Y+R++++ TP+A+ K ++ + F R + +P P E K HP
Sbjct: 187 Y-----EYLRRISLATPHAKITLKDPEDI------VVFDRVSHEIPKRPEEMKPHP 231
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +N+++ G+ +S+ T V ELV NSLD+ E LP V++ IE++G
Sbjct: 9 FKEHSVAEFFRKNRHMLGYSGKLRSMTTIVHELVTNSLDACEEAEILPDVKVEIEKLGTD 68
Query: 83 KFNSMI 88
+ ++
Sbjct: 69 HYKVIV 74
>gi|448491668|ref|ZP_21608508.1| DNA topoisomerase [Halorubrum californiensis DSM 19288]
gi|445692668|gb|ELZ44839.1| DNA topoisomerase [Halorubrum californiensis DSM 19288]
Length = 1383
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 9/204 (4%)
Query: 365 PEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVAT 424
P+ SPK+ + R P CL+P + G+ KE D A
Sbjct: 1059 PDASPKVKAIGGDRDAAADLLDAMRTTDILAPPTDCLAPITAELVEAGLRKEYDADFYAA 1118
Query: 425 YSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRIN 483
+ A+V G PFIVEAG++ GG+ +G + + RFANR+PL++++G T +K I
Sbjct: 1119 ATRDAEVHGGDPFIVEAGIAYGGEIPAEGSVELLRFANRVPLVYQRGA-CATTDVIKSIG 1177
Query: 484 WSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCI 537
W +Y ++Q + + + ST +PF K+ + + EI ++ A+++
Sbjct: 1178 WRNYGLDQPGGSGMPNGPAVISIHVASTNVPFTSESKDALA-NVPEIEDEIELAVREAAR 1236
Query: 538 QLKSKIVRKIQDREQQERKRNLSR 561
+LKS + ++ ++++E++ L R
Sbjct: 1237 ELKSFLNKRRSMQQRREKQDVLGR 1260
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 183 LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK 242
+K +RG+ G+G A+++S++++G P +I+S + + + +L ID N P + E+
Sbjct: 683 VKNSRGQQGIGISAAVLYSQLTSGQPAKITSRPKGQSRAQYFELIIDTDTNEPEISADEE 742
Query: 243 RENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVT--I 300
DR HG I++ +E N R ++ Y++ AV+ P+A+ E+ E + +
Sbjct: 743 T-TWDRPHGTRIELEMEANMRA-RQQLHGYVKHTAVVNPHARL------ELREPGLDEPL 794
Query: 301 RFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
+F R TD +P E + HP V+L + ++ T ++ FLQ EF +GK A+ +I
Sbjct: 795 KFERATDELPAETNEIRPHPHGVELGTLIKMLEATESYSVSGFLQEEFTRVGKKTADSVI 854
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + I IEE+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGHLPDIYIEIEEVG 79
>gi|345005805|ref|YP_004808658.1| DNA topoisomerase [halophilic archaeon DL31]
gi|344321431|gb|AEN06285.1| DNA topoisomerase (ATP-hydrolyzing) [halophilic archaeon DL31]
Length = 1378
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 98/186 (52%), Gaps = 16/186 (8%)
Query: 183 LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK 242
+K +RG+ G+G A+++S++++G P +I+S + +L ID N P + K
Sbjct: 683 VKNSRGQQGIGISAAVLYSQLTSGKPAKITSRTEGSTEAQYFELIIDTDTNEPEI----K 738
Query: 243 RENKDRW---HGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVT 299
REN W HG I++ +E N R ++ Y++ AV+ P+A+ E+ E +
Sbjct: 739 RENTTTWDRSHGTRIELEMEANMRA-RQQLHDYIKHTAVVNPHARI------ELREPGMA 791
Query: 300 --IRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAE 357
++F R TD +P E + HP V+L + +++ T ++ F+Q+EF +GK A+
Sbjct: 792 EPLKFERGTDQLPAETKEIRPHPHGVELGTLIKMLSATDSYSVSGFMQNEFTRVGKKTAD 851
Query: 358 RLIGEM 363
++ E
Sbjct: 852 SVLNEF 857
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 11/219 (5%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
NI + L R+ E P+ P + + + ++ R+ P CL+P +
Sbjct: 1040 NIVEELWRRM--ETVPDDPPDVKAVAGSRDTASKLLTAMRETDILSPPTDCLAPITAELV 1097
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
G+ KE D + + A+V G PF+VEAG++ GG+ G +++ RFANR+PL+++
Sbjct: 1098 EAGLRKEYDADFYSAATRDAEVHGGDPFVVEAGIAYGGELEAGGPIDLMRFANRVPLVYQ 1157
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G +T +K+I W +Y ++Q + V + ST +PF K+ + +
Sbjct: 1158 RGACAIT-DVVKQIGWRNYGLDQPGGSGMPSGPAVLMVHVASTNVPFTSESKDALA-NIP 1215
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
EI ++ AI++ +LKS + ++ +++E++ L R
Sbjct: 1216 EIEDEIELAIREAARELKSYLNKRRSMAKRREKQDVLGR 1254
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E+G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGFRPDIYVEIREVG 79
>gi|297618880|ref|YP_003706985.1| DNA topoisomerase VI subunit B [Methanococcus voltae A3]
gi|297377857|gb|ADI36012.1| DNA topoisomerase VI, B subunit [Methanococcus voltae A3]
Length = 658
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 387 LFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSV 445
+ + F PS L P G+ N+ L ++ L PD + T + + ++G PF VE G++
Sbjct: 447 VLQDMDFMAPSTIGLRPIGDENI-LKSLETLEPDFLKTLTRKPKTYKGGIPFAVEVGIAY 505
Query: 446 GGKDVKQGLN-----IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVF 499
GG + G N I R +N +PLLF+ G +T A+K +NW Y + +D I +F
Sbjct: 506 GGNAGRFGENGRKMEIMRNSNHVPLLFDTTGCGLT-NAVKSVNWKRYGLRSDEDAPITIF 564
Query: 500 VSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
V+++ST IP+ GK+ I +D +EI + ++ A+ C L + I R I+ +++E+K
Sbjct: 565 VNLISTHIPYTSAGKQAISTGTEDNEEIFNEIRQALMICGRDLNNYISR-IRKAKEEEQK 623
Query: 557 R 557
R
Sbjct: 624 R 624
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+P +P +FG++L+G+K + Q+RG+ G+GA L++S+M+TG P+
Sbjct: 71 YYKLIVEDNGSGIPPKYVPKVFGKMLAGSKLHRQIQSRGQQGIGAAGVLLFSQMTTGKPL 130
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I++S I + + I +N V H+ RE R E + E ++
Sbjct: 131 KITTST-GDGVIHEMDIQMSISKNEGDVLSHKTREGMYRGTKVEGEFK-EVTYSRREQGP 188
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
Y+R++++ TP+++ K E + F R +P P E K HP +
Sbjct: 189 FEYLRRISLSTPHSKITLKDPEE------EVLFDRTVFQVPEKPEEMKPHPHGI 236
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +NK++ G+ +S+ T + ELV NS+D+ E LP + +TIE +G
Sbjct: 11 FKEHSISEFFRKNKHMLGYSGKLRSMTTIIHELVTNSMDACEEAEILPDINVTIERLGNE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 YYKLIV 76
>gi|452207168|ref|YP_007487290.1| DNA topoisomerase VI subunit B [Natronomonas moolapensis 8.8.11]
gi|452083268|emb|CCQ36554.1| DNA topoisomerase VI subunit B [Natronomonas moolapensis 8.8.11]
Length = 1367
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 373 VKSLTSQQIV--RIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQ 430
V+S+ + V R + R+ P CL+P E + G+ KE D + A
Sbjct: 1049 VRSVAEDRDVAARFLEAMRETDILAPPTDCLAPISEDLVLAGLRKEYDADFYTAVTRDAA 1108
Query: 431 VFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKI 489
V G PF+VE G++ GG+ G + + RFANR+PL++++G T +K +NW +Y +
Sbjct: 1109 VHGGDPFVVEVGIAYGGEIEADGSVELLRFANRVPLVYQRGA-CATVDVLKNVNWRNYGL 1167
Query: 490 NQTQDKIG------VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
+Q + V + ST +PF K+ + + EI ++ A+Q+ L+S +
Sbjct: 1168 DQPGGSGMPGGSAVIMVHVASTSVPFTSESKDAVA-NIPEIEGELRLALQEAGRDLQSHL 1226
Query: 544 VRKIQDREQQERKRNL 559
+K + E++ RK+++
Sbjct: 1227 -KKQRSLEKRRRKQDV 1241
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 175 VLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNI 234
V++ +K +RG+ G+G A++++++++G P I+S + + +L ID N
Sbjct: 678 VVNDGAMSVKNSRGQQGIGISAAVLYAQLTSGKPANITSKTENGERARYFELTIDTDTNE 737
Query: 235 PHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVA 294
P + E + +R HG I+V +EGN R ++ +Y++ AV+ P+A+ F
Sbjct: 738 PEIDADEAT-SWERPHGTRIEVEMEGNMRA-RKQLRNYIKYTAVVNPHARIEFH------ 789
Query: 295 EKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKS 354
E + + R + +PP E + HP V+L + ++ T +L FLQ EF +G
Sbjct: 790 EPGGSFKSERAAEELPPETEEIRPHPHGVELGTLLKMLDSTESYSLSGFLQSEFTRVGAK 849
Query: 355 LA 356
A
Sbjct: 850 TA 851
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK + GFD+ K+L T V+E V+N+LD+ E LP + + I+E+G
Sbjct: 27 SIAEFFEKNKQMLGFDSDAKALVTAVKEAVDNALDATEEAGILPDIYVEIKEVG 80
>gi|150399069|ref|YP_001322836.1| DNA topoisomerase VI subunit B [Methanococcus vannielii SB]
gi|150011772|gb|ABR54224.1| DNA topoisomerase VI, B subunit [Methanococcus vannielii SB]
Length = 666
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAG 442
I + + F PS L P GE N+ + + L P+ + T + + ++G PF VE G
Sbjct: 452 IVNVLQDMDFMAPSTIGLRPIGEENIEKSL-ETLTPEFLKTLTRKPKTYKGGIPFAVEVG 510
Query: 443 VSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-I 496
++ GG + G + I RF+N +PLLF+ G +T A+K +NW Y + +D +
Sbjct: 511 LAYGGNAGRSGEDSKKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWKRYGLRSDEDAPV 569
Query: 497 GVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIVR 545
+FV+++ST IP+ GK+ I ++ +EI + V+ ++ C +L + I R
Sbjct: 570 TIFVNLISTHIPYTSAGKQAIATGSEENEEIFNEVRQSLMICARELDTHISR 621
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+ V +DNG G+P + + +FG++L+G+K + L Q+RG+ G+GA L++S+M+TG P++
Sbjct: 80 FTVIIEDNGPGIPPEYVSKVFGKMLAGSKLHRLVQSRGQQGIGAAGVLLFSQMTTGRPLK 139
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I++S + I ++ + I +N + H+ RE R E + E +
Sbjct: 140 ITTSTGTGK-IHEMEIKMSIEKNEGDIVAHKIREGYFRGTRVEGEFK-EVTYNRREQGPY 197
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ ++ + + TI F R V+P P K HP
Sbjct: 198 EYLRRISLSTPHAK-----ITLIDPEETTI-FERTVTVIPERPEVMKPHP 241
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +NK++ G+ +S+ T V ELV NS+D+ E LP + + ++++G
Sbjct: 19 FKEHSISEFFRKNKHMLGYSGRLRSMTTIVHELVTNSMDACEESEILPEILVEVKKVGSE 78
Query: 83 KFNSMI 88
F +I
Sbjct: 79 TFTVII 84
>gi|336122174|ref|YP_004576949.1| DNA topoisomerase VI subunit B [Methanothermococcus okinawensis
IH1]
gi|334856695|gb|AEH07171.1| DNA topoisomerase VI, B subunit [Methanothermococcus okinawensis
IH1]
Length = 658
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-P 436
++ IVR+ Q F PS L P GE N++ + K L+P+ V T + + ++G P
Sbjct: 441 AELIVRVIQ---DMDFMAPSTAGLRPIGEENIQKSL-KTLNPEFVKTITRRPKTYKGGIP 496
Query: 437 FIVEAGVSVGG-----KDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
F VEAG++ GG D + + I RFAN +PLLF+ G +T A+K INW Y +
Sbjct: 497 FAVEAGLAYGGDAGRISDNTRKMEIMRFANHVPLLFDTSGCGIT-NAVKSINWRRYGLRS 555
Query: 492 TQD-KIGVFVSIVSTKIPFKGTGKEYIG 518
+D + VFV+++ST IP+ GK+ +
Sbjct: 556 DEDVPLTVFVNLISTHIPYTSAGKQAVA 583
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 19/178 (10%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++++TG
Sbjct: 69 ADHYKVVVEDNGPGIPPEFVPKVFGKMLAGSKMHRLVQSRGQQGIGAAGVLLFAQITTGK 128
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW--TTY 265
P++I++S + I ++ + I +N V HE R W G + +EG + TY
Sbjct: 129 PLKITTST-GNGEIHTMEIKMSIEKNEGDVVSHEVRSG--FWRGTK----VEGEFKEVTY 181
Query: 266 RSK---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+ Y+R++++ TP+A+ K E T+ F R + +P P E K HP
Sbjct: 182 NRREQGPFEYLRRISLSTPHAKITLKDPEE------TVVFDRTVEDIPERPEEMKPHP 233
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T + ELV NSLD+ E LP ++I I+++G
Sbjct: 11 FKEHSISEFFRKNRHMLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIDIEIKKLGAD 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVVV 76
>gi|448562397|ref|ZP_21635355.1| DNA topoisomerase VI subunit B, partial [Haloferax prahovense DSM
18310]
gi|445718715|gb|ELZ70399.1| DNA topoisomerase VI subunit B, partial [Haloferax prahovense DSM
18310]
Length = 243
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ +Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+++S + + +L I+ +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KVTSRTQGSEDAEYFELVINTDQNEPEIRT-EKTTSWDRPHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVT--IRFSRRTDVMP 310
Y+ AV+ P+A+ E+ E + ++F R TD +P
Sbjct: 199 HDYILHTAVVNPHARI------ELREPGLDEPMKFERATDQLP 235
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIQPDIYVEIAEAG 79
>gi|448739098|ref|ZP_21721116.1| DNA topoisomerase VI subunit B [Halococcus thailandensis JCM 13552]
gi|445800247|gb|EMA50605.1| DNA topoisomerase VI subunit B [Halococcus thailandensis JCM 13552]
Length = 433
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-L 454
P CLSP +R G+ KE D A+ + A V G PFIVEAG++ GG +G +
Sbjct: 139 PPTDCLSPITADLVRSGLEKEFDADFYASATRDAGVHGGDPFIVEAGIAYGGDLPAEGSV 198
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T +K I W +Y ++Q + + + ST +P
Sbjct: 199 ELLRFANRVPLVYQRGA-CATTDVLKGIGWRNYGLDQPGGSGMPNGPAVIMIHVASTNVP 257
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
F K+ I + I ++ A+++ +LKS + ++ R Q+R+
Sbjct: 258 FTSESKDAIA-NIPAIEDEIELAVREAARELKSYLNKR---RSMQQRR 301
>gi|448591297|ref|ZP_21650898.1| DNA topoisomerase VI subunit B, partial [Haloferax elongans ATCC
BAA-1513]
gi|445733556|gb|ELZ85123.1| DNA topoisomerase VI subunit B, partial [Haloferax elongans ATCC
BAA-1513]
Length = 225
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 82/138 (59%), Gaps = 3/138 (2%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPI 209
+YR+ +DNG G+ + +P +FG++L G+++ + Q+RG+ G+G A+++S++++G P
Sbjct: 81 YYRLVIEDNGPGITKEQVPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + +L ID +N P + EK + DR HG I++ +E N R ++
Sbjct: 141 KITSRTQGSADAEYFELVIDTDKNEPEIRA-EKTTSWDRQHGTRIELEMEANMRA-RQQL 198
Query: 270 LHYMRQMAVITPYAQFLF 287
Y++ AV+ P+A
Sbjct: 199 HDYIQHTAVVNPHASLTL 216
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E+
Sbjct: 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIRPNIYVEISEV 78
>gi|359417868|ref|ZP_09209921.1| DNA topoisomerase VI subunit B, partial [Candidatus Haloredivivus
sp. G17]
gi|358031774|gb|EHK00625.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 203
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 317 KHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSL 376
K HP V+L ++ +I +S T+ FLQ+EF +G++ AE + E + +L
Sbjct: 2 KPHPHGVELGVMMRMIENSSARTITSFLQNEFTRVGRTSAEEICDEA--DMDTGRRPNTL 59
Query: 377 TSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHP 436
+I + + + K P CLSP GE + G+ KEL+P+ + S V++G+P
Sbjct: 60 EKDEIETLLKAAQNVKLQSPPTDCLSPIGEDLVLKGLKKELNPEFSTAITRSPTVYKGNP 119
Query: 437 FIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
F +E G++ GG +G + RFAN++PLL++
Sbjct: 120 FQIEVGLAWGGDIEDEGSFDELRFANKVPLLYK 152
>gi|385804024|ref|YP_005840424.1| DNA topoisomerase VI subunit B (type II DNA topoisomerase)
[Haloquadratum walsbyi C23]
gi|339729516|emb|CCC40779.1| DNA topoisomerase VI subunit B [Haloquadratum walsbyi C23]
Length = 1304
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLN 455
P CLSP + G+ KE D A + A+V G PFIVEAG++ GG+ ++
Sbjct: 1011 PPTDCLSPITADLVEAGLRKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGGELEGGKIS 1070
Query: 456 IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPF 509
+ RFANR+PL++++G T +K I W +Y ++Q V + + ST +PF
Sbjct: 1071 LLRFANRVPLVYQRGA-CATTDVIKSIGWRNYGLDQPGGSGMPNGPAVVMIHVASTNVPF 1129
Query: 510 KGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
K+ + + I ++ A+++ +LKS + ++ ++++E++ L R
Sbjct: 1130 TSESKDALA-NIPAIEDEIELAVREASRELKSYLNKRRSMQKRREKQDVLGR 1180
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 183 LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK 242
+K +RG+ G+G A+++S++++G P I++ +S + + +L ID N P V ++
Sbjct: 606 VKNSRGQQGIGISAAVLYSQLTSGKPARITTRTQSSDTAQYFELIIDTDTNEPEVSADQE 665
Query: 243 RE----NKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNV 298
R+ + HG I++ +E N R ++ Y++ AV+ P+A+ E +
Sbjct: 666 RDPGAASLSPTHGTRIELEMEANMRA-RGQLRDYVKDTAVVNPHARITLD------EPGL 718
Query: 299 -TIRFSRRTD--VMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSL 355
R R D +P E + HP V+L + ++ T ++ FL+ EF +G
Sbjct: 719 EEPRQYERVDGAELPAQTEEIRPHPHGVELGTLLKMLEATESYSVSGFLREEFTRVGSKT 778
Query: 356 AERLIGEM 363
A +++ +
Sbjct: 779 ATKILDQF 786
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + I I E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIKPDISIEIRESG 79
>gi|110668559|ref|YP_658370.1| DNA topoisomerase VI subunit B [Haloquadratum walsbyi DSM 16790]
gi|109626306|emb|CAJ52764.1| DNA topoisomerase VI subunit B [Haloquadratum walsbyi DSM 16790]
Length = 1304
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLN 455
P CLSP + G+ KE D A + A+V G PFIVEAG++ GG+ ++
Sbjct: 1011 PPTDCLSPITADLVEAGLRKEFDADFYAAATRDAEVHGGDPFIVEAGIAYGGELEGGKIS 1070
Query: 456 IFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPF 509
+ RFANR+PL++++G T +K I W +Y ++Q V + + ST +PF
Sbjct: 1071 LLRFANRVPLVYQRGA-CATTDVIKSIGWRNYGLDQPGGSGMPNGPAVVMIHVASTNVPF 1129
Query: 510 KGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
K+ + + I ++ A+++ +LKS + ++ ++++E++ L R
Sbjct: 1130 TSESKDALA-NIPAIEDEIELAVREASRELKSYLNKRRSMQKRREKQDVLGR 1180
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 183 LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEK 242
+K +RG+ G+G A+++S++++G P I++ +S + + +L ID N P V ++
Sbjct: 606 VKNSRGQQGIGISAAVLYSQLTSGKPARITTRTQSSDTAQYFELIIDTDTNEPEVSADQE 665
Query: 243 RE----NKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNV 298
R+ + HG I++ +E N R ++ Y++ AV+ P+A+ E +
Sbjct: 666 RDPGAASLSPTHGTRIELEMEANMRA-RGQLRDYVKDTAVVNPHARITLD------EPGL 718
Query: 299 -TIRFSRRTD--VMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSL 355
R R D +P E + HP V+L + ++ T ++ FL+ EF +G
Sbjct: 719 EEPRQYERVDGAELPAQTEEIRPHPHGVELGTLLKMLEATESYSVSGFLREEFTRVGSKT 778
Query: 356 AERLIGEM 363
A +++ +
Sbjct: 779 ATKILDQF 786
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + I I E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIKPDISIEIRESG 79
>gi|289193111|ref|YP_003459052.1| DNA topoisomerase VI, B subunit [Methanocaldococcus sp. FS406-22]
gi|288939561|gb|ADC70316.1| DNA topoisomerase VI, B subunit [Methanocaldococcus sp. FS406-22]
Length = 656
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + L PD V + + + +
Sbjct: 432 KELTWDEAEMIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLQPDFVKAITRNPKTYR 491
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG +QG + I RFAN +PLL++ +T+ A+K INW Y
Sbjct: 492 GGIPFAVEVGIAYGGNAGRQGDEGRRMEIMRFANHVPLLYDASACGLTK-AVKSINWKRY 550
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST IP+ GK+ + ++ +EI + ++ A+ C +L+ K +
Sbjct: 551 GLRGEDAPITVFVNLISTFIPYTSAGKQAVACSENENEEIYNEIRHALMICGRELE-KYL 609
Query: 545 RKIQDREQQERKR 557
+I+ ++E+KR
Sbjct: 610 SRIRREAEEEKKR 622
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 67 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 126
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P++I++S N I ++ +++ +N + K+ K +W G ++ E ++
Sbjct: 127 PLKITTSTGDGN-IYEVEVKMNVEKN--EGEIVSKKVRKGKWRGTRVEGEFKEVSYNRGE 183
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + K + + F R D +P P E K HP
Sbjct: 184 FGPFEYLRRISLATPHAKIVLK------DPYGEVVFDRVVDELPKKPEEMKPHP 231
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 9 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 68
Query: 83 KF 84
+
Sbjct: 69 HY 70
>gi|134045847|ref|YP_001097333.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C5]
gi|132663472|gb|ABO35118.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C5]
Length = 664
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K +T + I + + F PS L P GE N+ + L P+ + T + + ++
Sbjct: 440 KEMTWKDSEVIVNVLQDMDFMAPSTVGLRPIGEENIEKSL-NTLEPEFLKTLTRKPKTYK 498
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG+ + G + I RF+N +PLLF+ G +T A+K +NW Y
Sbjct: 499 GGIPFAVEVGLAYGGEAGRSGDESKKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWRRY 557
Query: 488 KINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQC--CIQLKSKIV 544
+ +D + VFV+++ST IP+ GK+ I ++E Q C + K +
Sbjct: 558 GLRSDEDAPVTVFVNLISTHIPYTSAGKQAIASSSEENEEIFNEIRQSLMICARELEKHI 617
Query: 545 RKIQDREQQERKR 557
KI+ +++E+KR
Sbjct: 618 SKIRKAKEEEQKR 630
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+ V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++M+TG P++
Sbjct: 78 FGVNIEDNGPGIPPEYVPKVFGKMLAGSKLHRLVQSRGQQGIGAAGVLLFAQMTTGKPLK 137
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW--TTYRSK 268
I+SS + I ++ + I RN V H+ RE W G +EG + TY +
Sbjct: 138 ITSST-GNGTIHEMEIKMSIERNEGDVVSHKTREG--FWRGTR----VEGEFKDVTYNRR 190
Query: 269 ---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS--SV 323
Y+R++++ P+A+ + E T+ F R +P P K HP +
Sbjct: 191 EQGPFEYLRRISLSAPHAKITLEDPEE------TLIFERTVFDIPERPEVMKPHPYGLTT 244
Query: 324 DLLLIKGLIAETSK 337
D LL + ++S+
Sbjct: 245 DELLHISRVTDSSR 258
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T V ELV NSLD+ E LP + + I +IG
Sbjct: 17 FKEHSISEFFRKNRHMLGYSGRLRSMTTIVHELVTNSLDACEESEILPEIVVEIRKIGSE 76
Query: 83 KF 84
F
Sbjct: 77 TF 78
>gi|448286239|ref|ZP_21477474.1| DNA topoisomerase VI subunit B, partial [Halogeometricum
borinquense DSM 11551]
gi|445575290|gb|ELY29769.1| DNA topoisomerase VI subunit B, partial [Halogeometricum
borinquense DSM 11551]
Length = 263
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 99/187 (52%), Gaps = 11/187 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMS 204
R +Y + +DNG G+ + IP +FG++L G+++ + Q+RG+ G+G A+++S+++
Sbjct: 76 RESGDYYTLIVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT 135
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHL-HEKRENKDRW---HGAEIQVVIEG 260
+G P +++S + + + +L ID N P + + HE + HG I+V +E
Sbjct: 136 SGKPAKVTSRTQGDSAAQYFELIIDTDTNEPEIQVEHELAPGESDLSPTHGTRIEVEMEA 195
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHH 319
N R ++ Y++ AV+ P+A + V + + +R+ R +P E + H
Sbjct: 196 NMRA-RQQLHDYVKHTAVVNPHA----RLVLDEPGLDEPLRYERVEGAGLPDETEEIRPH 250
Query: 320 PSSVDLL 326
P V+LL
Sbjct: 251 PHGVELL 257
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + + I E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIKPDISVEIRESG 79
>gi|13124830|sp|Q58434.2|TOP6B_METJA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
Full=Type II DNA topoisomerase VI subunit B;
Short=TopoVI-B
Length = 660
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + L PD V + + + ++
Sbjct: 436 KELTWDEAEMIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLQPDFVKAITRNPKTYK 495
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +QG + I RFAN +PLL++ +T+ A+K INW Y
Sbjct: 496 GGIPFAVEVAIAYGGNAGRQGDEGRRMEIMRFANHVPLLYDASACGLTK-AVKSINWKRY 554
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST IP+ GK+ + ++ +EI + ++ A+ C +L+ K +
Sbjct: 555 GLRGEDAPITVFVNLISTFIPYTSAGKQAVACSENENEEIYNEIRHALMICGRELE-KYL 613
Query: 545 RKIQDREQQERKR 557
+I+ ++E+KR
Sbjct: 614 SRIRREAEEEKKR 626
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 71 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 130
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P++I +S N I ++ +++ +N + K+ K +W G ++ E ++
Sbjct: 131 PLKIITSTGDGN-IYEVEVKMNVEKN--EGEIVSKKVRKGKWRGTRVEGEFKEVSYNRGE 187
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + K + + F R + +P P E K HP
Sbjct: 188 FGPFEYLRRISLATPHAKIVLK------DPYGEVVFDRVVNELPKKPEEMKPHP 235
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 13 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 72
Query: 83 KF 84
+
Sbjct: 73 HY 74
>gi|261403078|ref|YP_003247302.1| DNA topoisomerase VI subunit B [Methanocaldococcus vulcanius M7]
gi|261370071|gb|ACX72820.1| DNA topoisomerase VI, B subunit [Methanocaldococcus vulcanius M7]
Length = 656
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + LHPD V + + + ++
Sbjct: 432 KELTWDEAEAIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLHPDFVKAITRNPKTYK 491
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +QG + I RFAN +PLL++ +T+ A+K INW Y
Sbjct: 492 GGIPFAVEVAIAYGGDAGRQGDEGRKMEIMRFANHVPLLYDTSACGLTK-AVKSINWRRY 550
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG 518
+ I VFV+++ST IP+ GK+ +
Sbjct: 551 GLRGEDAPITVFVNLISTFIPYTSAGKQAVA 581
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 67 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 126
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P+ I +S I ++ +++ +N + + R+ W G ++ E ++
Sbjct: 127 PLRIITSTGDGK-IYEVEVKMNVEKNEGEIVSTKVRDGI--WRGTRVEGEFKEVSYNRGE 183
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + K + + F R D +P P E K HP
Sbjct: 184 FGPFEYLRRISLATPHAKIILK------DPQGEVVFDRVVDELPKKPEEMKPHP 231
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 9 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 68
Query: 83 KF 84
+
Sbjct: 69 HY 70
>gi|15669217|ref|NP_248022.1| DNA topoisomerase VI subunit B [Methanocaldococcus jannaschii DSM
2661]
gi|1591683|gb|AAB99032.1| DNA topoisomerase VI, subunit B (top6B) [Methanocaldococcus
jannaschii DSM 2661]
Length = 686
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + L PD V + + + ++
Sbjct: 462 KELTWDEAEMIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLQPDFVKAITRNPKTYK 521
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +QG + I RFAN +PLL++ +T+ A+K INW Y
Sbjct: 522 GGIPFAVEVAIAYGGNAGRQGDEGRRMEIMRFANHVPLLYDASACGLTK-AVKSINWKRY 580
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST IP+ GK+ + ++ +EI + ++ A+ C +L+ K +
Sbjct: 581 GLRGEDAPITVFVNLISTFIPYTSAGKQAVACSENENEEIYNEIRHALMICGRELE-KYL 639
Query: 545 RKIQDREQQERKR 557
+I+ ++E+KR
Sbjct: 640 SRIRREAEEEKKR 652
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 97 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 156
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P++I +S N I ++ +++ +N + K+ K +W G ++ E ++
Sbjct: 157 PLKIITSTGDGN-IYEVEVKMNVEKN--EGEIVSKKVRKGKWRGTRVEGEFKEVSYNRGE 213
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + K + + F R + +P P E K HP
Sbjct: 214 FGPFEYLRRISLATPHAKIVLK------DPYGEVVFDRVVNELPKKPEEMKPHP 261
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 39 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 98
Query: 83 KF 84
+
Sbjct: 99 HY 100
>gi|256810097|ref|YP_003127466.1| DNA topoisomerase VI subunit B [Methanocaldococcus fervens AG86]
gi|256793297|gb|ACV23966.1| DNA topoisomerase VI, B subunit [Methanocaldococcus fervens AG86]
Length = 656
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 67 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 126
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P++I++S N I ++ +++ +N + K+ K +W G ++ E ++
Sbjct: 127 PLKITTSTGDGN-IYEVEVKMNVEKN--EGEIVSKKVRKGKWRGTRVEGEFKEVSYNRGE 183
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ L K + + F R D +P P E K HP
Sbjct: 184 FGPFEYLRRISLATPHAKILLK------DPYGDVLFDRVVDELPKKPEEMKPHP 231
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + L PD V + + + ++
Sbjct: 432 KELTWDEAEMIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLQPDFVKAITRNPKTYK 491
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +Q + I RFAN +PLL++ +TR A+K INW Y
Sbjct: 492 GGIPFAVEVAIAYGGNAGRQSDEGRRMEIMRFANHVPLLYDASACGLTR-AVKSINWRRY 550
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST IP+ GK+ + ++ +EI + ++ A+ C +L+ K +
Sbjct: 551 GLRGEDAPITVFVNLISTFIPYTSAGKQAVACSENENEEIFNEIRHALMICGRELE-KYL 609
Query: 545 RKIQDREQQERKR 557
+I+ ++E+KR
Sbjct: 610 SRIRREAEEEKKR 622
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 9 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 68
Query: 83 KF 84
+
Sbjct: 69 HY 70
>gi|150400870|ref|YP_001324636.1| DNA topoisomerase VI subunit B [Methanococcus aeolicus Nankai-3]
gi|150013573|gb|ABR56024.1| DNA topoisomerase VI, B subunit [Methanococcus aeolicus Nankai-3]
Length = 662
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 15/173 (8%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y ++ +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++++TG P+
Sbjct: 73 YHISVEDNGPGIPPEFVPKVFGKMLAGSKMHRLVQSRGQQGIGAAGVLLFAQITTGKPLR 132
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
I++S I + + + +N V HE R+ W G I+V E TY +
Sbjct: 133 ITTSTGDGK-IHTLDIKMSVEKNEGDVVNHEIRDGV--WRG--IKVEGEFKEITYSRREQ 187
Query: 269 -ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + + + TI F R +++P P E K HP
Sbjct: 188 GPFEYLRRISLSTPHAKIV------LTDPEETITFDRTVEIIPDRPEEMKPHP 234
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-P 436
++ IVR+ Q F PS L P G+ N++ + L+P+ T + + ++G P
Sbjct: 445 AELIVRVIQ---DMDFMAPSTIGLRPIGDENIKKSL-STLNPEFATTLTRKPKTYKGGVP 500
Query: 437 FIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
F VE G++ GG K G + I RF+N +PLLF+ G +T + +K +NW Y +
Sbjct: 501 FAVEVGLAYGGDAGKMGDTGRKMEIMRFSNHVPLLFDTSGCGLT-SGVKSVNWRRYGLRS 559
Query: 492 TQD-KIGVFVSIVSTKIPFKGTGKEYIG 518
+D + VFV+++ST IP+ GK+ I
Sbjct: 560 EEDVPLTVFVNLISTHIPYTSAGKQAIA 587
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T + EL+ NSLD+ E LP ++ITI+++G
Sbjct: 12 FKEHSISEFFRKNRHMLGYSGKLRSMTTIIHELITNSLDACEEAEILPDIDITIKKLGSD 71
Query: 83 KFN 85
++
Sbjct: 72 HYH 74
>gi|291333564|gb|ADD93259.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S08-C82]
Length = 430
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 19/231 (8%)
Query: 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF--------RQA 391
+ FL F + A++L+ G K K + QI + + F +
Sbjct: 1 MTSFLYKNFSGVSSRAAKQLLEAAG--VLEKAKPKLMKPDQIRALIEAFQGERMLNGKAV 58
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG-GKDV 450
K +P CLSP E ++ G+ K + V T + S V +G+P+ VE G+ G G
Sbjct: 59 KLLNPPTNCLSPIEELLIKKGLSKTIDSRFVTTMTRSPTVSQGNPYQVEVGLIFGDGMAA 118
Query: 451 KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK------IGVFVSIVS 504
+ + + RFANR+PL+++QGG ++T+ A++ ++W Y ++Q + + V + S
Sbjct: 119 DKPVEVLRFANRVPLMYQQGGCLLTK-AIESVDWRQYGMDQAGGRGVPKGPAAILVHLAS 177
Query: 505 TKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQER 555
T + F KE + ++ E+ V+ A+ + L+ + +K + + QE+
Sbjct: 178 TNVQFTSEAKEALAEN-GEVMDEVRKAMLEMGRGLRKHLEKKKKMVKVQEK 227
>gi|374636140|ref|ZP_09707721.1| DNA topoisomerase VI, B subunit [Methanotorris formicicus Mc-S-70]
gi|373559955|gb|EHP86233.1| DNA topoisomerase VI, B subunit [Methanotorris formicicus Mc-S-70]
Length = 683
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 378 SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-P 436
++ IVR Q F PS L P G N+ + L+P+ V + + + ++G P
Sbjct: 465 AEIIVRCLQ---DMDFIAPSTSGLRPIGAENIEKSLESLLNPNFVKAITRNPKTYKGGIP 521
Query: 437 FIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ 491
F VE ++ GG+ +Q + I RFAN +PLLF+ GG +T+ A+K INW Y +
Sbjct: 522 FAVEVAIAYGGESGRQSDEGRKMEIMRFANHVPLLFDTGGCGLTK-AVKSINWKRYGLRG 580
Query: 492 TQDKIGVFVSIVSTKIPFKGTGKEYIG 518
+ VF++++ST +P+ GK+ +
Sbjct: 581 EDIPMTVFINLISTHVPYTSAGKQAVA 607
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+VT +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++M+TG P++
Sbjct: 96 YKVTVEDNGPGIPPEFVPKVFGKMLAGSKMHRLVQSRGQQGIGAAGVLLFAQMTTGKPLK 155
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEI-----QVVIE-GNWTT 264
I +S I ++ + + +N V H+ R W G + +V G +
Sbjct: 156 IITST-GDGIIHEMEIKMSVEKNEGEVVSHKTRPG--NWRGTRVGGEFKEVTYNRGEYGP 212
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
Y Y+R++++ TP+A+ K + TI F R + +P P E K HP +
Sbjct: 213 YE-----YLRRISLATPHAKITLK------DPEDTIVFDRVSHEIPKRPEEMKPHPHGL 260
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +N+++ G+ +S+ T + ELV NSLD+ E LP +++ IE++G
Sbjct: 35 FKEHSVAEFFRKNRHMLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGTD 94
Query: 83 KF 84
+
Sbjct: 95 HY 96
>gi|45358552|ref|NP_988109.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis S2]
gi|44921310|emb|CAF30545.1| DNA topoisomerase VI B [Methanococcus maripaludis S2]
Length = 664
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K +T + I + + F PS L P GE N+ + L P+ + T + + ++
Sbjct: 440 KEMTWKDSEVIVNVLQDMDFMAPSTVGLRPIGEENIEKSL-NTLEPEFLKTLTRKPKTYK 498
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG+ + G + I RF+N +PLLF+ G +T A+K +NW Y
Sbjct: 499 GGVPFAVEVGLAYGGEAGRSGDESRKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWRRY 557
Query: 488 KINQTQDK-IGVFVSIVSTKIPFKGTGKEYIG 518
+ +D + VFV+++ST IP+ GK+ I
Sbjct: 558 GLRNDEDAPVTVFVNLISTHIPYTSAGKQAIA 589
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 22/209 (10%)
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAK 195
P T K G +F V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA
Sbjct: 64 PEITVEIKKIGSETF-GVNIEDNGPGIPPEFVPKVFGKMLAGSKLHRLVQSRGQQGIGAA 122
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
L++++M+TG P++I++S + I ++ + I +N V RE W G
Sbjct: 123 GVLLFAQMTTGKPLKITTST-GNGTIYEMEIKMSIEKNEGDVVSRNTREG--FWRGTR-- 177
Query: 256 VVIEGNW--TTYRSK---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMP 310
+EG + TY + Y+R++++ P+A+ + E TI F R + +P
Sbjct: 178 --VEGEFKDVTYNRREQGPFEYLRRISLSAPHAKITLEDPEE------TIVFERTVNDIP 229
Query: 311 PVPVETKHHPS--SVDLLLIKGLIAETSK 337
P K HP + D LL + ++S+
Sbjct: 230 ERPEVMKPHPYGLTTDELLHISRVTDSSR 258
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T V ELV NSLD+ E LP + + I++IG
Sbjct: 17 FKEHSISEFFRKNRHMLGYSGRLRSMTTIVHELVTNSLDACEESEILPEITVEIKKIGSE 76
Query: 83 KF 84
F
Sbjct: 77 TF 78
>gi|159906052|ref|YP_001549714.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C6]
gi|159887545|gb|ABX02482.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C6]
Length = 664
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K +T + I + + F PS L P GE N+ + L P+ + T + + ++
Sbjct: 440 KEMTWKDSEVIVNVLQDMDFMAPSTVGLRPIGEENIEKSL-NTLEPEFLKTLTRKPKTYK 498
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG+ + G + I RF+N +PLLF+ G +T A+K +NW Y
Sbjct: 499 GGIPFAVEVGLAYGGEAGRSGEESKKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWRRY 557
Query: 488 KINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDT 521
+ +D + VFV+++ST IP+ GK+ I +
Sbjct: 558 GLRSDEDAPVTVFVNLISTHIPYTSAGKQAIASSS 592
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+ V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++M+TG P++
Sbjct: 78 FGVNIEDNGPGIPPEFVPKVFGKMLAGSKLHRLVQSRGQQGIGAAGVLLFAQMTTGKPLK 137
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW--TTYRSK 268
I++S + I ++ + I RN V H+ RE W G +EG + TY +
Sbjct: 138 ITTST-GNGTIHEMEIKMSIERNEGDVVSHKIREG--FWRGTR----VEGEFKDVTYNRR 190
Query: 269 ---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS--SV 323
Y+R++++ P+A+ + E TI F R + +P P K HP +
Sbjct: 191 EQGPFEYLRRISLSAPHAKISLEDPEE------TIIFERTVNDIPERPEVMKPHPYGLTT 244
Query: 324 DLLLIKGLIAETSK 337
D LL I ++S+
Sbjct: 245 DELLHISRITDSSR 258
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T V ELV NSLD+ E LP + + I++IG
Sbjct: 17 FKEHSISEFFRKNRHMLGYSGRLRSMTTIVHELVTNSLDACEESEILPEISVEIKKIGSE 76
Query: 83 KF 84
F
Sbjct: 77 TF 78
>gi|340624309|ref|YP_004742762.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis X1]
gi|339904577|gb|AEK20019.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis X1]
Length = 664
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K +T + I + + F PS L P GE N+ + L P+ + T + + ++
Sbjct: 440 KEMTWKDSEVIVNVLQDMDFMAPSTVGLRPIGEENIEKSL-NTLEPEFLKTLTRKPKTYK 498
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG+ + G + I RF+N +PLLF+ G +T A+K +NW Y
Sbjct: 499 GGVPFAVEVGLAYGGEAGRSGDESRKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWRRY 557
Query: 488 KINQTQDK-IGVFVSIVSTKIPFKGTGKEYIG 518
+ +D + VFV+++ST IP+ GK+ I
Sbjct: 558 GLRNDEDAPVTVFVNLISTHIPYTSAGKQAIA 589
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 22/209 (10%)
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAK 195
P T K G +F V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA
Sbjct: 64 PEITVEIKKIGSETF-GVNIEDNGPGIPPEFVPKVFGKMLAGSKLHRLVQSRGQQGIGAA 122
Query: 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQ 255
L++++M+TG P++I++S + I ++ + I +N V RE W G
Sbjct: 123 GVLLFAQMTTGKPLKITTST-GNGTIYEMEIKMSIEKNEGDVVSRNTREG--FWRGTR-- 177
Query: 256 VVIEGNW--TTYRSK---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMP 310
+EG + TY + Y+R++++ P+A+ + E TI F R + +P
Sbjct: 178 --VEGEFKDVTYNRREQGPFEYLRRISLSAPHAKITLEDPEE------TIVFERTVNDIP 229
Query: 311 PVPVETKHHPS--SVDLLLIKGLIAETSK 337
P K HP + D LL + ++S+
Sbjct: 230 ERPEVMKPHPYGLTTDELLHISRVTDSSR 258
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T V ELV NSLD+ E LP + + I++IG
Sbjct: 17 FKEHSISEFFRKNRHMLGYSGRLRSMTTIVHELVTNSLDACEESEILPEITVEIKKIGSE 76
Query: 83 KF 84
F
Sbjct: 77 TF 78
>gi|150402157|ref|YP_001329451.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C7]
gi|150033187|gb|ABR65300.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C7]
Length = 664
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K +T + I + + F PS L P GE N+ + L P+ + T + + ++
Sbjct: 440 KEMTWKDSEIIVNVLQDMDFMAPSTVGLRPIGEENIEKSL-NTLEPEFLKTLTRKPKTYK 498
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE G++ GG+ + G + I RF+N +PLLF+ G +T A+K +NW Y
Sbjct: 499 GGIPFAVEVGLAYGGEAGRSGDESKKMEIMRFSNHVPLLFDTSGCGLT-NAVKSVNWRRY 557
Query: 488 KINQTQDK-IGVFVSIVSTKIPFKGTGKEYIG 518
+ +D + VFV+++ST IP+ GK+ I
Sbjct: 558 GLRSDEDAPVTVFVNLISTHIPYTSAGKQAIA 589
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+ V +DNG G+P + +P +FG++L+G+K + L Q+RG+ G+GA L++++M+TG P++
Sbjct: 78 FGVNIEDNGPGIPPEFVPKVFGKMLAGSKLHRLVQSRGQQGIGAAGVLLFAQMTTGKPLK 137
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNW--TTYRSK 268
I++S + I ++ + I RN V H+ RE W G +EG + TY +
Sbjct: 138 ITTST-GNGTIHEMEIKMSIERNEGDVVSHKTREG--FWRGTR----VEGEFKDVTYNRR 190
Query: 269 ---ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPS--SV 323
Y+R++++ P+A+ + E TI F R + +P P K HP +
Sbjct: 191 EQGPFEYLRRISLSAPHAKITLEDPEE------TIVFERTVNDIPERPEVMKPHPYGLTT 244
Query: 324 DLLLIKGLIAETSK 337
D LL I ++S+
Sbjct: 245 DELLHISRITDSSR 258
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S +EFF +N+++ G+ +S+ T V ELV NSLD+ E LP + + I++IG
Sbjct: 17 FKEHSISEFFRKNRHMLGYSGRLRSMTTIVHELVTNSLDACEESEILPEIAVEIKKIGSE 76
Query: 83 KF 84
F
Sbjct: 77 TF 78
>gi|315427860|dbj|BAJ49452.1| DNA topoisomerase VI subunit B, partial [Candidatus Caldiarchaeum
subterraneum]
Length = 158
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YR+ DNG G+P D IP+ F VL G+KYG KQ+RG FGLG MAL++ +++T
Sbjct: 73 ERGVYRLRVVDNGVGVPGDKIPSAFATVLYGSKYGFKQSRGTFGLGGTMALLYGQITTNK 132
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRN 233
P +I SS + +L ID+ N
Sbjct: 133 PAKIMSSTDGKT-LHIYELMIDVVEN 157
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
SP+EFF +N++IAGF +P +SLY ++RELVENSLD+AE LP V I + E
Sbjct: 18 SPSEFFYKNRDIAGFSSPARSLYMSIRELVENSLDAAEMGRILPEVLIELGE 69
>gi|448414582|ref|ZP_21577651.1| DNA topoisomerase VI subunit B, partial [Halosarcina pallida JCM
14848]
gi|445682148|gb|ELZ34572.1| DNA topoisomerase VI subunit B, partial [Halosarcina pallida JCM
14848]
Length = 214
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R +Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S+++
Sbjct: 76 REAGDYYTLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT 135
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDR----WHGAEIQVVIEG 260
+G P +I+S + + + +L ID N P + + + E + HG I+V +E
Sbjct: 136 SGKPAKITSRTQGDSAAQYFELIIDTDTNEPEIQVERELEPGESDLSPTHGTRIEVEMEA 195
Query: 261 NWTTYRSKILHYMRQMAVI 279
N R ++ Y++ +++I
Sbjct: 196 NMRA-RQQLHDYVKHLSLI 213
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E P + I I E G
Sbjct: 26 SIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIKPDISIEIREAG 79
>gi|359416865|ref|ZP_09209125.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032779|gb|EHK01424.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 141
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP + + I+EIG K
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILPEIHVLIDEIGDKK 76
Query: 84 F-----NSMIGLVDRERV 96
++ IGL DRE +
Sbjct: 77 CRVEIRDNAIGL-DRETI 93
>gi|359416798|ref|ZP_09209071.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032846|gb|EHK01478.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 162
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP + + I+EIG K
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILPEIHVLIDEIGDKK 76
Query: 84 F-----NSMIGLVDRERV 96
++ IGL DRE +
Sbjct: 77 CRVEIRDNAIGL-DRETI 93
>gi|359417606|ref|ZP_09209722.1| DNA topoisomerase VI subunit beta [Candidatus Haloredivivus sp.
G17]
gi|358032039|gb|EHK00827.1| DNA topoisomerase VI subunit beta [Candidatus Haloredivivus sp.
G17]
Length = 345
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP + + I+EIG K
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILPEIHVLIDEIGDKK 76
Query: 84 F-----NSMIGLVDRERV 96
++ IGL DRE +
Sbjct: 77 CRVEIRDNAIGL-DRETI 93
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 8/89 (8%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
RV +DN G+ + IP +FG++L G+K+ L+Q+RG+ G+G + ++++++TG P+ +
Sbjct: 78 RVEIRDNAIGLDRETIPKVFGKLLYGSKFHKLQQSRGQQGIGISASAMYAQLTTGEPVTV 137
Query: 212 SSSMR---SHNFISFCKLDIDIHRNIPHV 237
S H F+ + ID N P++
Sbjct: 138 YSKQEGEPCHKFV----VTIDTETNEPNI 162
>gi|291333320|gb|ADD93027.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S04-C246]
Length = 174
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 156 CKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSS 214
+DNG G+P + I ++FG+ L G+++ ++QTRG+ G+G +++S+++TG + S
Sbjct: 76 TQDNGPGIPRNAIEDVFGKFLLGSRFHAIRQTRGQQGIGITGVVMYSQLTTGSKTHVISK 135
Query: 215 MRSHNFISFCKLDIDIHR 232
++ F +L +D +
Sbjct: 136 IKDDASAVFVELGLDTRK 153
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
S KQ + +EFF +NK+ GFD+ +S+ T V+E V+NSLD+ E LP + + +
Sbjct: 9 SKQKQIAVSEFFEKNKHFLGFDSLQRSIITAVKESVDNSLDACEEARILPNIHVEL 64
>gi|359416106|ref|ZP_09208473.1| DNA topoisomerase VI subunit B, partial [Candidatus Haloredivivus
sp. G17]
gi|358033526|gb|EHK02064.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 179
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 250 HGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVM 309
HG I++ IE +T + +Y++ A++ PYA+ + + + F R + +
Sbjct: 12 HGTTIEMNIEAKYTHGHHSVFNYLKHTAIMNPYARVVLR-----EPDGNKVEFPRVSREL 66
Query: 310 PPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVN 350
P E K HP V+L ++ +I +S T+ FLQ+EF +
Sbjct: 67 PKKSKEIKPHPHGVELGVMMRMIENSSARTITSFLQNEFTD 107
>gi|359416613|ref|ZP_09208911.1| DNA topoisomerase VI subunit B, partial [Candidatus Haloredivivus
sp. G17]
gi|358033024|gb|EHK01631.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 92
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 457 FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT----QDKIGVFVSIVSTKIPFKGT 512
RFAN++PLL+++ V T+ A++ ++W+ Y I+QT Q + + V I S +PF
Sbjct: 16 LRFANKVPLLYKKSSCVTTK-AIEEVSWNRYNISQTGNRPQGPLYILVHIASVWVPFTSE 74
Query: 513 GKEYIGD 519
GKE + +
Sbjct: 75 GKEAVAN 81
>gi|359417502|ref|ZP_09209641.1| DNA topoisomerase VI subunit B, partial [Candidatus Haloredivivus
sp. G17]
gi|358032143|gb|EHK00908.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 137
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 315 ETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVK 374
E K HP V+L ++ +I +S T+ FLQ+EF +G++ AE + E +
Sbjct: 13 EIKPHPHGVELGVMMRMIENSSARTITSFLQNEFTRVGRTSAEEICDEA--DMDTGRRPN 70
Query: 375 SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAG-EYNLRLGIIKELHPD------MVATYSG 427
+L +I + + + K P CLSP G +LR + L+P+ + AT S
Sbjct: 71 TLEKDEIETLLKAAQNVKLQSPPTDCLSPIGRRLSLRKAXKRTLNPEFSTAVLLTATVSM 130
Query: 428 SAQVF 432
+++F
Sbjct: 131 GSRLF 135
>gi|359417449|ref|ZP_09209601.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032195|gb|EHK00947.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 170
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 300 IRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERL 359
+R SR +P E K HP V+L ++ +I +S T+ FLQ+EF +G++ AE +
Sbjct: 24 LRVSRE---LPKKSKEIKPHPHGVELGVMMRMIENSSARTITSFLQNEFTRVGRTSAEEI 80
Query: 360 IGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHP 419
E + +L +I + + + K P CLSP GE + G+ KE
Sbjct: 81 CDEA--DMDTGRRPNTLEKDEIETLLKAAQNVKLQSPPTDCLSPIGEDLVLKGLKKEAE- 137
Query: 420 DMVATYS 426
D+ A S
Sbjct: 138 DLSALSS 144
>gi|70949737|ref|XP_744252.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524128|emb|CAH76029.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 473
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 167/398 (41%), Gaps = 60/398 (15%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWS-KMSTGL 207
+SFY + C+DNG+G+ D+ N+ L+ + + T GKFG+G K L++S K + G
Sbjct: 5 SSFYEIICRDNGEGIEVKDLENISEMFLTSKEKCI--TSGKFGIGLKTILLYSFKTAYGF 62
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN-KDRWHGA-EIQVVIEGNWTTY 265
++ + LD +N+ H + +E D+W EI V+++ N
Sbjct: 63 LHIKIKVKKNIIWDFILVLD----KNLNHTFVQNFKEYIDDKWEWTIEISVILKIN---- 114
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
+Y+ + + FL + +KN+T+++ + + + + +S +
Sbjct: 115 ----NNYISDQKIHSYIKLFL------LWKKNITVKYIHNPNGEQFIYTYSSYSDTSEET 164
Query: 326 LLIKGLIAETSKGTLLQ--FLQ------HEFVNIGKSLAERLI-GEMGPEFSPKMAVKSL 376
+L ++A+ S + + FL + +VN+ KS E++I E G ++ +
Sbjct: 165 IL--SMLADNSINMIFKKDFLTSYNYDVNMYVNVRKS--EKIIPYEHGHNIGFLFLIRYV 220
Query: 377 TSQQIVR-------IHQLFRQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGS 428
S ++R I FR K+ P G P E + + + P+ S
Sbjct: 221 NSMPLLRTSSSDCSITVDFRNFLKYYGPQFGIELPTAENRDEMTLEELAIPECFDELSKV 280
Query: 429 AQVF------EGHPFIVEAGVSVGGKD---VKQGLNIFRFANRIPLLFEQGGDVVTRTAM 479
A VF + I+ G+ V G+D V N + + L ++ V + +
Sbjct: 281 ANVFPVKRSEKSTWNIMIIGIDVRGRDISFVSLSKNCIKEGEYLSSLIKKCS-VNLYSNI 339
Query: 480 KR------INWSSYKINQTQDKIGVFVSIVSTKIPFKG 511
KR N S Y++ Q D GV ++ +KI KG
Sbjct: 340 KRELPQEFENISDYQLRQALDIYGVQLASSLSKIILKG 377
>gi|156101489|ref|XP_001616438.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805312|gb|EDL46711.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 542
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E S Y + C+DNG+G D+ F + +K G ++T GKFG+G K L++S +
Sbjct: 65 ELSLYEIVCRDNGEGAEIKDLEK-FSEIFLTSK-GERKTGGKFGIGLKTILLYSFKTAYG 122
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD---RWHGAEIQVVIEGNWTT 264
+ + + + F L I +++ H + +E D +W EI V+++ N T
Sbjct: 123 FLHLKVRVEENKIWDFMLL---IDKDLSHTFVQNFKEYVDEEWKW-SIEISVILKMNSTC 178
Query: 265 --YRSKILHYMRQMAV 278
Y +I YM+ + +
Sbjct: 179 SVYDRRISFYMKLILL 194
>gi|359416736|ref|ZP_09209014.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032899|gb|EHK01526.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 112
Score = 48.5 bits (114), Expect = 0.009, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 412 GIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLF 467
G+ KEL+P+ + S V++G+PF +E G++ GG +G + RFAN++PLL+
Sbjct: 3 GLKKELNPEFSTAITRSPTVYKGNPFQIEVGLAWGGDIEDEGSFDELRFANKVPLLY 59
>gi|290559171|gb|EFD92530.1| DNA topoisomerase VI subunit B [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 111
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISEL 69
S EFF +N+++ GFDN K+L T V+E V+NSLD+ E + +
Sbjct: 15 SVTEFFEKNRHLLGFDNKQKALLTCVKEAVDNSLDACEELGHM 57
>gi|359416595|ref|ZP_09208896.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358033044|gb|EHK01648.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 89
Score = 47.4 bits (111), Expect = 0.019, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELP 70
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD+ E LP
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLDACEGDEILP 63
>gi|124514020|ref|XP_001350366.1| DNA topoisomerase VI, B subunit, putative [Plasmodium falciparum
3D7]
gi|23615783|emb|CAD52775.1| DNA topoisomerase VI, B subunit, putative [Plasmodium falciparum
3D7]
Length = 561
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 150 SFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPI 209
S+Y++TC+DNGKG D+ F + +K T GKFG+G K L++S + +
Sbjct: 84 SYYKITCRDNGKGSKIKDLEK-FSEIFLTSKDNC-STSGKFGIGLKTILLYSLKTAYGFL 141
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD-RWH-GAEIQVVIEGNWTTYRS 267
I + + F + + +N+ H + +E D W+ EI ++++ N +
Sbjct: 142 HIKVKVEENKIWDFMLV---MDKNLNHTFIQNFKEYIDTNWNWSVEISLILKIN-----N 193
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
K +H R I Y + + + ++ K + D M + H + + L
Sbjct: 194 KFIHDQR----IYTYIKLVLLWKRDINIKCI-------IDNMDEFIYTYEEHANEYEFTL 242
Query: 328 IKGLIAETSKGTLLQ 342
+ ++ K Q
Sbjct: 243 LHSILNYNCKNITFQ 257
>gi|68072457|ref|XP_678142.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498514|emb|CAH95817.1| conserved hypothetical protein [Plasmodium berghei]
Length = 546
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 109/247 (44%), Gaps = 36/247 (14%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWS-KMSTGL 207
+SFY + C+DNG+G+ D+ + L+ + + T GKFG+G K L++S K + G
Sbjct: 78 SSFYEIICRDNGEGIEVKDLEKISEMFLTSKEKCI--TSGKFGIGLKTILLYSFKTAYGF 135
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN-KDRWHGA-EIQVVIEGNWTTY 265
++ + LD +N+ H + +E D+W EI V+++ N
Sbjct: 136 LHIKIKVKKNKIWDFILVLD----KNLNHTFVQNFKEYIDDKWEWTIEISVILKINNNYI 191
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDL 325
K +H ++ ++ +KN+T+++ + + + H +S +
Sbjct: 192 SDKKIHSYIKLFLL--------------WKKNITVKYIHNPNGEQSIYTYSSHSDTSEEN 237
Query: 326 LLIKGLIAETSKGTLLQ--FLQ------HEFVNIGKSLAERLI-GEMGPEFSPKMAVKSL 376
+L ++A S + + FL + +VN+ KS E++I E G ++ +
Sbjct: 238 IL--SMLANNSINMIFKKDFLTSYNYDVNMYVNVRKS--EKIIPYEHGHNIGFLFLIRYV 293
Query: 377 TSQQIVR 383
S ++R
Sbjct: 294 NSMPLLR 300
>gi|221057450|ref|XP_002261233.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|194247238|emb|CAQ40638.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 525
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
+ E S Y + C+DNG+G D+ F + +K +T GKFG+G K L++S +
Sbjct: 63 KKELSLYEIVCRDNGEGAEIKDLEK-FSEIFLTSK-DESKTSGKFGIGLKTILLYSYKTA 120
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRE--NKDRWHGAEIQVVIEGNWT 263
+ + + + F L I +++ H + +E N++ EI V+++ N T
Sbjct: 121 YGFLHLKVRVEENKIWDFMLL---IDKDLSHTFVQNFKEYVNEEWKWSIEISVILKMNNT 177
Query: 264 T--YRSKILHYM 273
Y +I YM
Sbjct: 178 CNVYDRRISFYM 189
>gi|389584397|dbj|GAB67129.1| hypothetical protein PCYB_111500 [Plasmodium cynomolgi strain B]
Length = 530
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205
+ E S Y + C+DNG+G D+ F + +K ++T GKFG+G K L++S +
Sbjct: 63 KKELSLYEIVCRDNGEGAEIKDLEK-FSEIFLTSKDD-RKTGGKFGIGLKTILLYSFKTA 120
Query: 206 GLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD---RWHGAEIQVVIEGNW 262
+ + + F L I +++ H + +E D +W EI V+++ N
Sbjct: 121 YGFLHLKVRVEEKKIWDFMLL---IDKDLSHTFVQNFKEYVDEEWKW-SIEISVILKMNS 176
Query: 263 TT--YRSKILHYM 273
T Y +I YM
Sbjct: 177 TCNVYDRRISFYM 189
>gi|359416394|ref|ZP_09208724.1| Type 2 DNA topoisomerase 6 subunit B [Candidatus Haloredivivus sp.
G17]
gi|358033252|gb|EHK01827.1| Type 2 DNA topoisomerase 6 subunit B [Candidatus Haloredivivus sp.
G17]
Length = 116
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 279 ITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG 338
+ PYA+ + + + F R + +P E K HP V+L ++ +I +S
Sbjct: 1 MNPYARVVLR-----EPDGNKVEFPRVSRELPKKSKEIKPHPHGVELGVMMRMIENSSAR 55
Query: 339 TLLQFLQHEFVNIGKSLAE----RLIGEMGPEFSPKM 371
T+ FLQ+EF +G++ AE +++ E+ +F P +
Sbjct: 56 TITSFLQNEFTRVGRTSAEXXNKKILSELRSKFDPDI 92
>gi|359416118|ref|ZP_09208484.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358033519|gb|EHK02058.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 57
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLD 61
++ S AEFF +NK++ GF+N KS+ T V+E V+NSLD
Sbjct: 17 REISVAEFFEKNKHLLGFENAQKSIITVVKEAVDNSLD 54
>gi|403383213|ref|ZP_10925270.1| sensor protein [Kurthia sp. JC30]
Length = 578
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMAL 198
+ +F RV +DNG G+P +D+P +F R K +TRGK G G +A+
Sbjct: 498 QVNFVRVRVQDNGAGIPKEDLPYVFERFYKADK---ARTRGKAGTGLGLAI 545
>gi|374608038|ref|ZP_09680838.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium tusciae JS617]
gi|373554600|gb|EHP81179.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium tusciae JS617]
Length = 517
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 133 KVKEPSATKG----AKGRGE--ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQT 186
+V P+AT A GR + A + +T D+G G+P D +P++F R G K Q
Sbjct: 400 RVHTPAATTVTTGIATGRADDGAEYVELTVADDGPGIPADMLPHLFERFFRGDKSRSSQA 459
Query: 187 RGKFGLGAKMA 197
G FGLG +A
Sbjct: 460 -GSFGLGLSIA 469
>gi|443327775|ref|ZP_21056384.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442792610|gb|ELS02088.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 469
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 132 KKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFG 191
K++K+ +++ + ++++VT KD GKG+ D+P +F R +Q FG
Sbjct: 369 KQIKKNISSRKVREYNRQNYFQVTIKDTGKGIAESDLPYIFDRFYRADPARSRQVDLAFG 428
Query: 192 LGAKMALIWSK 202
GA + L +K
Sbjct: 429 TGAGLGLAIAK 439
>gi|406898980|gb|EKD42385.1| hypothetical protein ACD_73C00182G0001 [uncultured bacterium]
Length = 187
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 478 AMKRINWSSYKINQTQDKIG-----VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAI 532
A + +NW SY +NQ + + + VS+VS I FK KE + D + E+ ++ +
Sbjct: 4 ACETVNWRSYGLNQPKGSLPLGPYIIAVSVVSPFIKFKNASKETV-DASDELVEEIRRTL 62
Query: 533 QQCCIQLKSKIVRKIQDREQQERKR 557
QC +L SK +R+ + E+KR
Sbjct: 63 MQCGQKL-SKHIRREEKEADLEKKR 86
>gi|407685300|ref|YP_006800474.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'English Channel 673']
gi|407246911|gb|AFT76097.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'English Channel 673']
Length = 920
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 140 TKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 199
T +GR E S Y KDNGKGM D I +F R G K + K GLG ++++
Sbjct: 681 TVHVRGRREHSNYLFRVKDNGKGMTQDQIARVFERFYQG-----KDSHNKLGLGLGLSIV 735
>gi|300814230|ref|ZP_07094506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511654|gb|EFK38878.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 605
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
G+ +F +++ KDNG G+P +D+P +F R K G + G GLG +A K S G
Sbjct: 520 GKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEK-GRSREMGGTGLGLSIANEMIK-SLG 577
Query: 207 LPIEISSSM 215
I+ISS++
Sbjct: 578 GSIKISSTL 586
>gi|282882283|ref|ZP_06290915.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
lacrimalis 315-B]
gi|281297877|gb|EFA90341.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
lacrimalis 315-B]
Length = 581
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206
G+ +F +++ KDNG G+P +D+P +F R K G + G GLG +A K S G
Sbjct: 496 GKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEK-GRSREMGGTGLGLSIANEMIK-SLG 553
Query: 207 LPIEISSSM 215
I+ISS++
Sbjct: 554 GSIKISSTL 562
>gi|384457013|ref|YP_005669433.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
EA 2018]
gi|325507702|gb|ADZ19338.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
EA 2018]
Length = 467
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMAL 198
E F + T KDNGKG+P DI ++F R GT T GLG MA+
Sbjct: 389 EEGFIKTTIKDNGKGIPEKDIEHIFERYYRGT----NTTSNSKGLGLGMAI 435
>gi|332142950|ref|YP_004428688.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'Deep ecotype']
gi|332143005|ref|YP_004428743.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'Deep ecotype']
gi|327552972|gb|AEA99690.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'Deep ecotype']
gi|327553027|gb|AEA99745.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'Deep ecotype']
Length = 908
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 124 QAKNAALGKKVKEPS--ATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY 181
Q N L +K S T +GR E S Y + KDNGKGM + + ++F R G
Sbjct: 650 QVINNLLSNALKFTSKGGTVHVRGRREHSNYTLRVKDNGKGMTQEQVAHVFERFYQG--- 706
Query: 182 GLKQTRGKFGLGAKMALI 199
K + K GLG ++++
Sbjct: 707 --KDSHNKHGLGLGLSIV 722
>gi|410863215|ref|YP_006978449.1| multi-sensor signal transduction histidine kinase [Alteromonas
macleodii AltDE1]
gi|410820477|gb|AFV87094.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii AltDE1]
Length = 908
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 124 QAKNAALGKKVKEPS--ATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY 181
Q N L +K S T +GR E S Y + KDNGKGM + + ++F R G
Sbjct: 650 QVINNLLSNALKFTSKGGTVHVRGRREHSNYTLRVKDNGKGMTQEQVAHVFERFYQG--- 706
Query: 182 GLKQTRGKFGLGAKMALI 199
K + K GLG ++++
Sbjct: 707 --KDSHNKHGLGLGLSIV 722
>gi|83315397|ref|XP_730775.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490604|gb|EAA22340.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 313
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWS-KMSTGL 207
+SFY + C+DNG+G+ D+ + L+ + + T GKFG+G K L++S K + G
Sbjct: 78 SSFYEIICRDNGEGIEVKDLEKISEMFLTSKEECI--TSGKFGIGLKTILLYSFKTAYGF 135
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN-KDRWHGA-EIQVVIEGN 261
++ + LD +N+ H + +E D W EI V+++ N
Sbjct: 136 LHIKIKVKKNKIWDFILVLD----KNLNHTFVQNFKEYIDDTWEWTIEISVILKIN 187
>gi|229095232|ref|ZP_04226224.1| hypothetical protein bcere0020_4890 [Bacillus cereus Rock3-29]
gi|229114180|ref|ZP_04243601.1| hypothetical protein bcere0017_4820 [Bacillus cereus Rock1-3]
gi|423381449|ref|ZP_17358733.1| hypothetical protein IC9_04802 [Bacillus cereus BAG1O-2]
gi|423444701|ref|ZP_17421606.1| hypothetical protein IEA_05030 [Bacillus cereus BAG4X2-1]
gi|423450528|ref|ZP_17427406.1| hypothetical protein IEC_05135 [Bacillus cereus BAG5O-1]
gi|423467567|ref|ZP_17444335.1| hypothetical protein IEK_04754 [Bacillus cereus BAG6O-1]
gi|423536968|ref|ZP_17513386.1| hypothetical protein IGI_04800 [Bacillus cereus HuB2-9]
gi|423542693|ref|ZP_17519082.1| hypothetical protein IGK_04783 [Bacillus cereus HuB4-10]
gi|423543998|ref|ZP_17520356.1| hypothetical protein IGO_00433 [Bacillus cereus HuB5-5]
gi|423626276|ref|ZP_17602053.1| hypothetical protein IK3_04873 [Bacillus cereus VD148]
gi|228669200|gb|EEL24621.1| hypothetical protein bcere0017_4820 [Bacillus cereus Rock1-3]
gi|228688091|gb|EEL41977.1| hypothetical protein bcere0020_4890 [Bacillus cereus Rock3-29]
gi|401124913|gb|EJQ32674.1| hypothetical protein IEC_05135 [Bacillus cereus BAG5O-1]
gi|401168189|gb|EJQ75456.1| hypothetical protein IGK_04783 [Bacillus cereus HuB4-10]
gi|401185161|gb|EJQ92257.1| hypothetical protein IGO_00433 [Bacillus cereus HuB5-5]
gi|401252830|gb|EJR59081.1| hypothetical protein IK3_04873 [Bacillus cereus VD148]
gi|401629710|gb|EJS47522.1| hypothetical protein IC9_04802 [Bacillus cereus BAG1O-2]
gi|402410223|gb|EJV42628.1| hypothetical protein IEA_05030 [Bacillus cereus BAG4X2-1]
gi|402413505|gb|EJV45848.1| hypothetical protein IEK_04754 [Bacillus cereus BAG6O-1]
gi|402460550|gb|EJV92271.1| hypothetical protein IGI_04800 [Bacillus cereus HuB2-9]
Length = 481
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
EA ++ ++ +D G+G+P +DIP++F R K + T GK G+G +A
Sbjct: 403 EADYFTISVQDEGEGIPEEDIPHIFDRFYRVDKSRTRATGGK-GIGLAVA 451
>gi|335039524|ref|ZP_08532684.1| multi-sensor signal transduction histidine kinase
[Caldalkalibacillus thermarum TA2.A1]
gi|334180592|gb|EGL83197.1| multi-sensor signal transduction histidine kinase
[Caldalkalibacillus thermarum TA2.A1]
Length = 601
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKM 196
P T + + +A ++ KD G G+P +D+P +F R K +TRGK G G +
Sbjct: 504 PQGTVTVQLKEDAHGAHISVKDTGDGIPEEDLPFVFERFYKADK---ARTRGKSGTGLGL 560
Query: 197 ALI 199
A++
Sbjct: 561 AIV 563
>gi|423620772|ref|ZP_17596582.1| hypothetical protein IIO_06074 [Bacillus cereus VD115]
gi|401246712|gb|EJR53057.1| hypothetical protein IIO_06074 [Bacillus cereus VD115]
Length = 481
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
EA ++ ++ +D G+G+P +DIP++F R K + T GK G+G +A
Sbjct: 403 EADYFTISVQDEGEGIPEEDIPHIFDRFYRVDKSRTRATGGK-GIGLAVA 451
>gi|390455406|ref|ZP_10240934.1| integral membrane sensor signal transduction histidine kinase
[Paenibacillus peoriae KCTC 3763]
Length = 428
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 GRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
GR + ++ DNG G+P D+PN+F R G K +T G GLG +A
Sbjct: 335 GRYQGPSVYISVSDNGCGIPEADLPNVFNRFYRGDK-ARSRTEGGTGLGLSIA 386
>gi|407708543|ref|YP_006832128.1| hypothetical protein MC28_5307 [Bacillus thuringiensis MC28]
gi|407386228|gb|AFU16729.1| sensor histidine kinase [Bacillus thuringiensis MC28]
Length = 481
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
EA ++ ++ +D G+G+P +DIP++F R K + T GK G+G +A
Sbjct: 403 EADYFTISVQDEGEGIPKEDIPHIFDRFYRVDKSRTRATGGK-GIGLAVA 451
>gi|403238128|ref|ZP_10916714.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
10403023]
Length = 595
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 147 GEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 199
G+ + +V KD G G+P +D+P +F R K +TRGK G G +A++
Sbjct: 514 GQETSVKVDIKDTGSGIPEEDLPFVFERFYKADK---ARTRGKSGTGLGLAIV 563
>gi|359416871|ref|ZP_09209130.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
gi|358032773|gb|EHK01419.1| DNA topoisomerase VI subunit B [Candidatus Haloredivivus sp. G17]
Length = 114
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKF-----NSMIGLVDRERV 96
KS+ T V+E V+NSLD+ E LP + + I+EIG K ++ IGL DRE +
Sbjct: 34 KSIITVVKEAVDNSLDACEGDEILPEIHVLIDEIGDKKCRVEIRDNAIGL-DREXI 88
>gi|229101339|ref|ZP_04232083.1| hypothetical protein bcere0019_5180 [Bacillus cereus Rock3-28]
gi|228682044|gb|EEL36177.1| hypothetical protein bcere0019_5180 [Bacillus cereus Rock3-28]
Length = 481
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
EA ++ + +D G+G+P +DIP++F R K + T GK G+G +A
Sbjct: 403 EADYFTINVQDEGEGIPEEDIPHIFDRFYRVDKSRTRATGGK-GIGLAVA 451
>gi|441207999|ref|ZP_20973760.1| putative sensor histidine kinase TcrY [Mycobacterium smegmatis
MKD8]
gi|440627734|gb|ELQ89541.1| putative sensor histidine kinase TcrY [Mycobacterium smegmatis
MKD8]
Length = 502
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 144 KGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
+G G+ S VT DNG G+ D +P++F R + K + G FGLG +A
Sbjct: 411 RGNGDTSHAEVTVSDNGPGIDPDLLPHLFERFVRADK-SRSRAAGSFGLGLSIA 463
>gi|77456970|ref|YP_346475.1| hypothetical protein Pfl01_0743 [Pseudomonas fluorescens Pf0-1]
gi|77380973|gb|ABA72486.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 575
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
K K R S Y++ D+GKGM HD+I N F + S YG K + K+G+G K A
Sbjct: 56 KTLKNRNSVSSYKIM--DDGKGMSHDEIVNAF-TLGSKRNYG-KNSLSKYGMGLKSA--- 108
Query: 201 SKMSTGLPIEISS 213
+S G I I+S
Sbjct: 109 -GLSLGSKITITS 120
>gi|72382277|ref|YP_291632.1| histidine kinase [Prochlorococcus marinus str. NATL2A]
gi|72002127|gb|AAZ57929.1| histidine kinase [Prochlorococcus marinus str. NATL2A]
Length = 377
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 48 LYTTVRELVENS-LDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYET 106
L V +L+E S L ++ S+ E I +EEI S +N++ L D+++++ L + +T
Sbjct: 198 LKLMVNDLLELSRLVNSSSVQEELTKTINMEEIVLSSWNTLKPLADKKKLN--LVNTSKT 255
Query: 107 EKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHD 166
E K R NA + SA + + ++ KD G G+ D
Sbjct: 256 NSLIEGNSEKLYRVVFNLLDNAI---RYSPDSANINTQIHEDEKHLILSIKDEGPGLSKD 312
Query: 167 DIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
D+ NMF R G K R GLG +A
Sbjct: 313 DLKNMFQRFYRGDPSRYKNKRIGSGLGLSIA 343
>gi|402831732|ref|ZP_10880408.1| gliding motility-associated C-terminal domain protein, partial
[Capnocytophaga sp. CM59]
gi|402281005|gb|EJU29700.1| gliding motility-associated C-terminal domain protein, partial
[Capnocytophaga sp. CM59]
Length = 496
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 402 SPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNI 456
+PAGEY L+ + + HP + A + + E P ++ G+S G V G I
Sbjct: 364 APAGEYTLKYNLCMKDHPTICAEANVKIVILEDKPIVIHNGISANGDGVNDGFMI 418
>gi|406926042|gb|EKD62371.1| Sensor protein [uncultured bacterium]
Length = 288
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 137 PSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKM 196
P + G K ++ F VT KD G G+P D+P +F R GT + +G GLG +
Sbjct: 204 PHGSIGLKLVEQSHFIMVTIKDTGIGIPKHDLPQLFKRFFRGTN---AEEKGS-GLGLAI 259
Query: 197 ALIWSKMSTGLPIEISSSMRSHNFISFC 224
A + + G I ISSS+ +S
Sbjct: 260 AKAVVE-NLGGKIAISSSLNKGTSVSVT 286
>gi|118469988|ref|YP_887234.1| sensor histidine kinase [Mycobacterium smegmatis str. MC2 155]
gi|399987252|ref|YP_006567601.1| sensor protein [Mycobacterium smegmatis str. MC2 155]
gi|118171275|gb|ABK72171.1| sensor histidine kinase [Mycobacterium smegmatis str. MC2 155]
gi|399231813|gb|AFP39306.1| Sensor protein [Mycobacterium smegmatis str. MC2 155]
Length = 502
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 GRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
G G+ S VT DNG G+ D +P++F R + K + G FGLG +A
Sbjct: 412 GNGDTSHAEVTVSDNGPGINPDLLPHLFERFVRADK-SRSRAAGSFGLGLSIA 463
>gi|407701542|ref|YP_006826329.1| multi-sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250689|gb|AFT79874.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
macleodii str. 'Black Sea 11']
Length = 920
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 124 QAKNAALGKKVKEPS--ATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY 181
Q N L +K S T +GR E S Y + KDNGKGM + + ++F R Y
Sbjct: 663 QVINNLLSNALKFTSKGGTVHIRGRREHSNYLIRVKDNGKGMTQEQLAHVFERF-----Y 717
Query: 182 GLKQTRGKFGLGAKMALI 199
K K GLG ++++
Sbjct: 718 QSKSEHNKHGLGLGLSIV 735
>gi|124025855|ref|YP_001014971.1| two-component sensor histidine kinase, phosphate sensing
[Prochlorococcus marinus str. NATL1A]
gi|112818646|gb|ABI23446.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
NATL1A]
gi|123960923|gb|ABM75706.1| two-component sensor histidine kinase, phosphate sensing
[Prochlorococcus marinus str. NATL1A]
Length = 377
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 48 LYTTVRELVENS-LDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYET 106
L V +L+E S L ++ S+ + I +EEI S +N++ L D+++++ L + +T
Sbjct: 198 LKLMVNDLLELSRLVNSSSVQDELTKTINMEEIVLSSWNTLKPLADKKKLN--LVNTSKT 255
Query: 107 EKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHD 166
E K R NA + SA + + ++ KD G G+ D
Sbjct: 256 NSLIEGNSEKLYRVVFNLLDNAI---RYSPDSANINTQIHEDDKHLILSIKDEGPGLSKD 312
Query: 167 DIPNMFGRVLSGTKYGLKQTRGKFGLGAKMA 197
D+ NMF R G K R GLG +A
Sbjct: 313 DLKNMFQRFYRGDPSRYKNKRIGSGLGLSIA 343
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,533,941,436
Number of Sequences: 23463169
Number of extensions: 360267178
Number of successful extensions: 1004194
Number of sequences better than 100.0: 380
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1002246
Number of HSP's gapped (non-prelim): 847
length of query: 561
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 413
effective length of database: 8,886,646,355
effective search space: 3670184944615
effective search space used: 3670184944615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)