BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008575
(561 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1
SV=1
Length = 670
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/556 (86%), Positives = 521/556 (93%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK SK+ K NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAES
Sbjct: 8 ETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAES 67
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VE+TIEEI KSKFNSMIGL+DRERVDT+LYDDYETEKAR +RLAKEARA E+QA
Sbjct: 68 ISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQA 127
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KN A GKK KEP +K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 128 KNLASGKKNKEPGVSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 187
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLHEK+ N
Sbjct: 188 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGN 247
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K++WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RR
Sbjct: 248 KEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRR 307
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP
Sbjct: 308 TDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGP 367
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 368 DFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 427
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVS+GG+DVKQG+NIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 428 SGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWN 487
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDD EIA+AVKSAIQQCCIQLKSKIV+
Sbjct: 488 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVK 547
Query: 546 KIQDREQQERKRNLSR 561
++Q REQQERKR+LSR
Sbjct: 548 RLQAREQQERKRSLSR 563
>sp|C3NHT6|TOP6B_SULIN Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=top6B PE=3 SV=1
Length = 530
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYANRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|Q9YE64|TOP6B_AERPE Type 2 DNA topoisomerase 6 subunit B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=top6B PE=3 SV=2
Length = 568
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 237/424 (55%), Gaps = 11/424 (2%)
Query: 141 KGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIW 200
+G++GRG Y VT +DNG G+P + FG+VL +KY ++QTRG +GLG K A+++
Sbjct: 85 EGSEGRGGRPRYTVTVEDNGIGVPVTSMAMAFGKVLFSSKYVIRQTRGMYGLGVKAAILY 144
Query: 201 SKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260
+M+ G P+E+ S+ + ++ KL ID+ RN P + + + WHG + + +EG
Sbjct: 145 GQMTAGTPVEVYSATKGSQYVYMMKLVIDVQRNEPRILERGEWNKRGSWHGTRVTLSLEG 204
Query: 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
+W+ +SKIL Y+++ AVI PYA+ + E + + F R T +P P E+K HP
Sbjct: 205 DWSRAKSKILEYIKRTAVIAPYAEIIL----ETPDGEIYY-FPRSTRKLPKPPRESKPHP 259
Query: 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMG--PEFSPKMAVKSLTS 378
VD+ +K ++ T TL +FL EF +IG A+ + + G P+ P+ +K
Sbjct: 260 HGVDIEQLKSMLRSTRASTLREFLVKEFQSIGDKTAQDFLEKYGLDPDLKPRELLKKGRD 319
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
+ + R+ + F P LSP G + +G+ + +P+ V S S + + GHPFI
Sbjct: 320 KLLRRLADALMEYPFRAPKSDYLSPIGSDIIEIGLRRMFNPEWVGAVSRSPKAYRGHPFI 379
Query: 439 VEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497
VE G++ GG + + + R+AN+IPLL+E+ D V+ + INW Y ++ +
Sbjct: 380 VEVGIAYGGGIEARSEPLLLRYANKIPLLYEERED-VSYKVVSSINWRQYNVDFPAPLV- 437
Query: 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
V V I STK+P+KG GKE + D EI + +++A+Q+ +L+ + RK ++ E R
Sbjct: 438 VLVHIASTKVPYKGVGKESV-SDVPEIEAEIRNAVQEVARRLRLYLSRKAREEEAIRRSV 496
Query: 558 NLSR 561
L++
Sbjct: 497 TLAK 500
>sp|C3NDW7|TOP6B_SULIY Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=top6B PE=3 SV=1
Length = 530
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|C3MYN1|TOP6B_SULIM Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=top6B PE=3 SV=1
Length = 530
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|C3MPN7|TOP6B_SULIL Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=top6B PE=3 SV=1
Length = 530
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|C4KGX9|TOP6B_SULIK Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=top6B PE=3 SV=1
Length = 530
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|C3N5B3|TOP6B_SULIA Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus
(strain M.16.27) GN=top6B PE=3 SV=1
Length = 530
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPANSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDEARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|O05207|TOP6B_SULSH Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus shibatae
GN=top6B PE=1 SV=1
Length = 530
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 241/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + I KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
LI + T+ +FL +EF +IG + A++++ G P VK+LT ++I R+ + F+
Sbjct: 244 LINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG
Sbjct: 302 KDEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + + I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVENIEKEIKNALMEVARKLKQYLSEK---RKEQEAKKKL 468
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I ++
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|Q97ZF0|TOP6B_SULSO Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=top6B
PE=3 SV=1
Length = 530
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 242/412 (58%), Gaps = 15/412 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A+++S+M PIE
Sbjct: 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIE 128
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
I +S + + KL IDI++N P + EN +HG + + I G+W +S+I
Sbjct: 129 IETSPVNSKRLYTFKLKIDINKNEPIIVERGSVENNTGFHGTSVAISIPGDWPKAKSRIY 188
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +ITPYA+F+FK E NVT + R T+ +P P E K HP VD IK
Sbjct: 189 EYIKRTYIITPYAEFIFK----DPEGNVT-YYPRLTNKIPKPPQEVKPHPYGVDREEIKI 243
Query: 331 LIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I + T+ +FL EF +IG + A++++ +G P VK+LT ++I R+ + F+
Sbjct: 244 MINNLKRDYTIKEFLMSEFQSIGDTTADKILELVG--LRPNKKVKNLTEEEITRLVETFK 301
Query: 390 QAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
+ + F PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAG++ GG
Sbjct: 302 KYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFTASITRKPKAYQGHPFIVEAGIAFGGS 361
Query: 449 -DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKI 507
V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKI
Sbjct: 362 IPVGEEPIVLRYANKIPLIYDEKSDVIWKV-VEELDWKRYGIESDQYQMVVMVHLCSTKI 420
Query: 508 PFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
P+K GKE I + ++I +K+A+ + +LK + K R++QE K+ L
Sbjct: 421 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKLYLSEK---RKEQEAKKKL 468
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNS 86
SPAEFF N +AGF NP ++LY TVREL+ENSLD+ + LP ++ITI+ I +S+
Sbjct: 11 SPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDESRQIY 70
Query: 87 MIGLVD 92
+ +VD
Sbjct: 71 KVNVVD 76
>sp|A4YHK7|TOP6B_METS5 Type 2 DNA topoisomerase 6 subunit B OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=top6B PE=3 SV=1
Length = 531
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 236/417 (56%), Gaps = 16/417 (3%)
Query: 148 EASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGL 207
E YR+T +DNG G+P +P+ FGRVL +KY L+QTRG +GLG K A+++S+M
Sbjct: 66 EKEIYRLTVEDNGIGIPPHVVPDAFGRVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQDK 125
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRS 267
PIEI+++ + I KL ID+ +N P ++ N +HG + + I G+W +S
Sbjct: 126 PIEITTAPLNSKRIYSFKLKIDVTKNEPIIYERGSVNNDTGYHGTSVSMYILGDWMRAKS 185
Query: 268 KILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
++ Y+++ +ITPYA+F FK E NV + + R T+ MP P E K HP VD+ L
Sbjct: 186 RVYEYIKRTYIITPYAEFYFK----DPEGNVVL-YPRLTNKMPVPPKEVKPHPYGVDIEL 240
Query: 328 IKGLIAETSKGTLL-QFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQ 386
+K +I+ + T + +FL EF ++G+ A +I G P V+ LT Q+ ++
Sbjct: 241 LKNMISRQKEDTTVKEFLVKEFQSVGEKTALSVIEMAG--LDPDKRVQKLTDDQLSKLVD 298
Query: 387 LFRQ-AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
+ F PS LS G + LG+ + +P+ V + + ++GHPFIVE G++
Sbjct: 299 AMKNFPDFRPPSPEALSTIGADLIELGLKQTFNPEYVGAVTRRPKAYQGHPFIVEVGLAY 358
Query: 446 GGKDVK--QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIV 503
GG D++ + + R+AN+IPL++++ DVV + ++ I+W Y I Q + V V +
Sbjct: 359 GG-DIQPSEEPTVLRYANKIPLIYDEKSDVVWK-VVEEIDWKRYGIEDEQLPLVVMVHLC 416
Query: 504 STKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
STK+P+K GKE I D +EI +++ I + LK+ + K +E++ RKR L+
Sbjct: 417 STKVPYKSAGKESIA-DVEEIEKEIRNGIMEASRSLKTFMTEK--RKEEEARKRLLT 470
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP +++Y +RELVEN+LD+ + LP +++ IE + K
Sbjct: 11 SPAEFFKRNPELAGFSNPARAMYQALRELVENALDATDVHEILPSIKVIIERTSQEK 67
>sp|Q971T2|TOP6B_SULTO Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=top6B PE=3
SV=1
Length = 532
Score = 249 bits (635), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 222/398 (55%), Gaps = 15/398 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P +PN FG+VL +KY L+QTRG +GLG K A+++S+M P+E
Sbjct: 68 IYKVNVEDNGIGIPPHIVPNAFGKVLYSSKYVLRQTRGMYGLGVKAAVLYSQMYQERPVE 127
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ +S + I F KL ID+ +N P + N+ WHG + + + +W + KI
Sbjct: 128 VVTSPINSKRIYFFKLKIDVVKNEPIILQKTSVVNEKNWHGTSVTLYLYADWQRAKQKIY 187
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ +I+PYA+F FK N I + R TD +P P E K HP VD+ LIK
Sbjct: 188 EYVKKTYIISPYAEFFFK-----DPDNNVIYYKRLTDKIPEPPKEVKPHPYGVDIELIKF 242
Query: 331 LIAETSKGTLLQ-FLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389
+I + K ++ FL +EF +IG A++++ EM + LT ++I R+ ++ +
Sbjct: 243 MIVKKDKPVPVRDFLINEFQSIGDVTADKIL-EMA-KLPKDKKTTELTDEEISRLVEVMK 300
Query: 390 QAKFDD---PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVG 446
KFDD PS LS GE ++LG+ +P+ + + ++GHPFIVEAG++ G
Sbjct: 301 --KFDDFRPPSAEALSVIGEDLIKLGLKSIFNPEFAEAITRKPKAYQGHPFIVEAGIAYG 358
Query: 447 GKDVKQGLNI-FRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVST 505
G I R+AN+IPL++++ DV+ + + ++W Y I + Q + V V + ST
Sbjct: 359 GAIQPSPEPIVLRYANKIPLIYDEKSDVIWKVVTEEMDWKRYGIEEEQPPLVVMVHLCST 418
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKI 543
K+P++ GKE I D +EI +K A+ +LK I
Sbjct: 419 KVPYRSAGKESIA-DVEEIEKEIKLALMDVARKLKKYI 455
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
SPAEFF N +AGF NP ++LY TVRELVEN+LD+ + + LP ++I IE + K
Sbjct: 10 SPAEFFKRNPELAGFSNPARALYQTVRELVENALDATDVHNILPSIKIIIELVDPQK 66
>sp|Q8ZVM0|TOP6B_PYRAE Type 2 DNA topoisomerase 6 subunit B OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=top6B PE=3 SV=1
Length = 527
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 231/411 (56%), Gaps = 15/411 (3%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS 213
V +DNG G+P ++IPN+FGRV +KY +KQ RG FGLG KM +++S+ +T P+ + S
Sbjct: 69 VYAEDNGIGIPGNEIPNVFGRVFYSSKYKIKQHRGVFGLGLKMVVLYSQSTTNKPVLVRS 128
Query: 214 SMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKILHYM 273
+ + I ++ ID + N P + + N+ +WHG ++V +EGNW + +I Y+
Sbjct: 129 ATLKSDKIYEYQIMIDTNSNSPIILDRREYPNRYKWHGTAVKVYLEGNWLAAKKRIEDYL 188
Query: 274 RQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIA 333
++ A+I PYA+ +FK ++ + RRT +PP P E HP SVD+ +K +I
Sbjct: 189 KRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTLKQMIQ 242
Query: 334 ETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK- 392
E+ TLL+FL F +G+ A+ + G F+P V +LT +++V++ +Q +
Sbjct: 243 ESRGLTLLEFLMENFDAVGEGTAKAFLEWAG--FNPNAKVTALTPEELVKLVDKMKQYEG 300
Query: 393 FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK--DV 450
+ P LSPAG L +G L + V + + + GHPFIVEA V+ GG+
Sbjct: 301 WRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVEAAVAWGGQIPPA 360
Query: 451 KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFK 510
+ L + R+AN+IPLL+++G D V R + NW +YK+ + + V + + STKIP+
Sbjct: 361 DKPL-LLRYANKIPLLYDEGAD-VARKVVDEFNWQNYKV-KFPAPLAVIIHVCSTKIPYA 417
Query: 511 GTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
GKE I + EI +K A++ +L+ + RK ++ E + +L++
Sbjct: 418 SAGKEAIA-EVPEIEKEMKLALRDAAKKLRLYLSRKEKEMEMLNKYISLAK 467
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 29 AEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITI 76
AE+F N+ +AGF NP ++LY T+REL ENSLD+ E+ LP + + +
Sbjct: 10 AEWFRRNRELAGFHNPTRALYQTIRELTENSLDATETYGILPTIYLRV 57
>sp|O29605|TOP6B_ARCFU Type 2 DNA topoisomerase 6 subunit B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=top6B PE=3 SV=1
Length = 602
Score = 202 bits (514), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 216/400 (54%), Gaps = 25/400 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
+++ +DNG G+P + IP +FG++L G+++ ++Q+RG+ G+G A+++++++TG P
Sbjct: 65 FKIVVEDNGPGIPREQIPKVFGKLLYGSRFHEIRQSRGQQGIGISAAVLYAQLTTGKPAT 124
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWH---GAEIQVVIEGNWTTYRS 267
+ S + L I+ +N E ++ W+ G +I++ + GN+ R
Sbjct: 125 VISKTPDEDRAKKVVLYINTKKN----EPEIVEEGEEEWYLPSGTKIELEVAGNYVRERK 180
Query: 268 K-ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTI-RFSRRTDVMPPVPVETKHHPSSVDL 325
+ + Y+R+ +VI P+A+ F E + TI F R TD +P P K HP ++L
Sbjct: 181 QSVYEYLRETSVINPHAKITF------VEPDGTINEFKRVTDDIPQPPKSIKPHPHGIEL 234
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+ ++ T TL +FL+ EFV +G+ +A+ ++ + G FS + + ++
Sbjct: 235 GTLMSMLKSTRATTLRRFLKEEFVRVGEKIADDVLRKAG--FSGDETPQEMGRDDAAKLL 292
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSV 445
FRQ F P CLSP GE + ++ E P+ V + +V+ GHPF+VE G++
Sbjct: 293 NAFRQTDFLPPPTDCLSPIGEAMIAKSLMAEFQPEFVYAVTRKPKVYSGHPFLVEVGLAY 352
Query: 446 GGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG-----VFV 500
GG+ + + + R+AN+IPLL++QGG +T+ A++ +NW SY + Q + ++ + +
Sbjct: 353 GGEIKSEKVTLLRYANKIPLLYQQGGCALTK-AVESVNWKSYGMVQNRGELPSAPAVILI 411
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLK 540
+ ST IP+ KE + EI + A+Q+ +LK
Sbjct: 412 HLASTNIPYTSESKESVA-AIPEIIDETRLALQEVGRRLK 450
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
++ S AEFF +NK+I G+ NP K++ T V+E V+N+LD+ E LP + + I ++
Sbjct: 6 REISVAEFFEKNKHILGYSNPAKAIITVVKEAVDNALDACEEAGILPDIFVRISKV 61
>sp|Q12WQ0|TOP6B_METBU Type 2 DNA topoisomerase 6 subunit B OS=Methanococcoides burtonii
(strain DSM 6242) GN=top6B PE=3 SV=1
Length = 622
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 213/411 (51%), Gaps = 18/411 (4%)
Query: 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPIEIS 212
V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G ++++++++ G P +
Sbjct: 76 VIVEDNGPGIVKEQIPKVFAKLLYGSRFHALKQSRGQQGIGISASVLYAQLTAGHPTSVI 135
Query: 213 SSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSKILH 271
S + + ++ I+ N P + L E + DR HG +++ +E ++ R I
Sbjct: 136 SKIGPDSPAHHYEVMINTSTNDPEILLDEVI-DWDRPHGTRVELEMEASYVKGRRQSIYE 194
Query: 272 YMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGL 331
Y++ A++ P+A+ + + F R TD +P E HP ++L + +
Sbjct: 195 YLKATAIVNPHARLTL-----IEPDGNEVIFDRATDKLPIPAKEILPHPHGIELGTLMKM 249
Query: 332 IAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391
+ T + L FL++ F IG AE + G +M LT Q ++ F++
Sbjct: 250 LRYTDRQKLAPFLRYSFSKIGLLTAEEICKAAG--LDTEMLPSKLTRDQTKKLLDAFKKV 307
Query: 392 KFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVK 451
K P CLSP GE + G+ KE + D +AT + S VF G+PF+VE G++ GG K
Sbjct: 308 KIMAPPTDCLSPIGEELIYKGLEKEFNVDFIATTTRSPSVFSGNPFVVEVGIAYGGVLQK 367
Query: 452 QG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ-----TQDKIGVFVSIVST 505
++I RFANR+PLL++QGG T A++ I W Y +NQ + + V + ST
Sbjct: 368 DDRIDIMRFANRVPLLYQQGG-CATTHAVEGIKWKQYGLNQPGGGMPTGPVVLLVHVAST 426
Query: 506 KIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+PF K+ I D EI V+ AI++ +L + R++ ++++E++
Sbjct: 427 NVPFTSESKDAIA-DIPEIRDEVELAIKEVSRKLNRYLNRQVSLKKRREKE 476
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 20 ESALKQK--SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQ+ S AEFF +N+ I GFD+ +SL TTV+E V+NSLD+ E LP + + IE
Sbjct: 8 ELAKKQQAISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNSLDACEEAEILPDILLHIE 67
Query: 78 EIGKSKFNSMI 88
+GK + ++
Sbjct: 68 RVGKDNVSVIV 78
>sp|Q468I5|TOP6B_METBF Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=top6B PE=3 SV=1
Length = 621
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 216/419 (51%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+
Sbjct: 68 RTGQDYVTVIIEDNGPGIIKEQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 127
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
G +I S S N + +L I+ N P + L ++ + R HG +I++ ++ +
Sbjct: 128 AGKQTKILSKTGSGNPAHYYELMINTSTNEPDI-LKDEIRDWFRPHGTQIELEMKAAYVK 186
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R I Y++ A++ P+A+ + + V F R TD MP E HP +
Sbjct: 187 GRRQSISEYLKATAIVNPHARI--TLIEPDGNEEV---FERATDKMPKPAEEILPHPEGI 241
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T + L FL++ F IG AE + G P++ +L + +
Sbjct: 242 ELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKASG--LDPEIDPHALGRHEARK 299
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ + F + K P CLSP GE + G+ KE + D +AT + V+ G+PF+VE G+
Sbjct: 300 LIEAFEKVKIMSPPTDCLSPIGEELIYRGLEKETNVDFIATSTRKPAVYSGNPFVVEVGL 359
Query: 444 SVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GGK K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ + V
Sbjct: 360 AYGGKLPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIKWKQYGLNQPGGGVPVGPAI 418
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ + S +PF K+ I D I + AI+ +LK + ++ ++++E++
Sbjct: 419 LLIHVASINVPFTSESKDAIA-DIPVIKDEIDLAIKDVARKLKHYLSKQSNLKKRREKE 476
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
K S AEFF +N+ I GFD+ +SL TTV+E V+N+LD+ E LP + + IE G+
Sbjct: 14 KSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQIERTGQDY 73
Query: 84 FNSMI 88
+I
Sbjct: 74 VTVII 78
>sp|Q8PUB8|TOP6B_METMA Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=top6B PE=1 SV=1
Length = 621
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 212/419 (50%), Gaps = 18/419 (4%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
R + V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+
Sbjct: 68 RTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 127
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
G +I S + +L I+ N P + + E R + R HG +I++ + +
Sbjct: 128 AGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR-DWFRPHGTQIELEMRAAYVK 186
Query: 265 -YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323
R I Y++ A++ P+A+ + + V F R TD MP E HP +
Sbjct: 187 GRRQSIYEYLKATAIVNPHARI--TLIDPDGNEEV---FERATDKMPEPAEEILPHPEGI 241
Query: 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVR 383
+L + ++ T + L FL++ F IG AE + G P++ +L + +
Sbjct: 242 ELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAG--LDPEIDPHALGRHEARK 299
Query: 384 IHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGV 443
+ + F + K P CLSP GE + G+ KE D +AT + V+ G+PF+VE G+
Sbjct: 300 LIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGM 359
Query: 444 SVGGKDVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV---- 498
+ GG K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ I V
Sbjct: 360 AYGGNLPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIKWKQYGLNQPGGGIPVGPVI 418
Query: 499 -FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
+ + S +PF K+ I D I + AI++ +LK + ++ ++++E++
Sbjct: 419 LLIHVASINVPFTSESKDAIA-DIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKE 476
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+ I GFD+ +SL TTV+E V+N+LD+ E LP + + +E
Sbjct: 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVE 67
Query: 78 EIGKSKFNSMI 88
G +I
Sbjct: 68 RTGPDYVTVII 78
>sp|Q8TQF7|TOP6B_METAC Type 2 DNA topoisomerase 6 subunit B OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=top6B PE=3 SV=1
Length = 621
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 216/414 (52%), Gaps = 18/414 (4%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+ V +DNG G+ + IP +F ++L G+++ LKQ+RG+ G+G A+++++M+ G
Sbjct: 73 YVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHT 132
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT-YRSK 268
+I S S+ + +L I+ N P + + E R + R HG +I++ ++ + R
Sbjct: 133 KILSKTGSNVPAHYYELMINTSTNEPDILMDEVR-DWFRPHGTQIELEMKAAYVKGRRQS 191
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
I Y++ A++ P+A+ + + V F R TD +P E HP ++L +
Sbjct: 192 IYEYLKATAIVNPHARI--TLIDPDGNEEV---FERATDKIPDPAEEILPHPEGIELGTL 246
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388
++ T + L FL++ F IG A+ + G P++ +L + ++ + F
Sbjct: 247 MKMLHYTERQKLAPFLRYSFCKIGLLTADEICKAAG--LDPEIDPHALGRHEARKLIEAF 304
Query: 389 RQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK 448
++ K P CLSP GE + G+ KE + D +AT + V+ G+PF+VE G++ GG
Sbjct: 305 QKVKIMSPPTDCLSPIGEELIYRGLEKETNVDFIATSTRKPAVYSGNPFVVEVGLAYGGN 364
Query: 449 DVK-QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV-----FVSI 502
K + ++I RFANR+PLL++QGG VT A++ I W Y +NQ + + + +
Sbjct: 365 LPKEEKISIMRFANRVPLLYQQGG-CVTTHAVEDIRWKQYGLNQPGGGVPIGPVLLLIHV 423
Query: 503 VSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
S +PF K+ I D I V A+++ +LK + ++ ++++E++
Sbjct: 424 ASINVPFTSESKDAIA-DIPVIKEEVDLAVKEVARKLKHYLSKQSNLKKRREKE 476
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 20 ESALKQKS--PAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIE 77
E A KQKS AEFF +N+ I GFD+ +SL TTV+E V+NSLD+ E LP + + +E
Sbjct: 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNSLDACEEAGILPDILVQVE 67
Query: 78 EIGKSKFNSMI 88
G+ +I
Sbjct: 68 RTGQDYVTVII 78
>sp|O74020|TOP6B_PYRHO Type 2 DNA topoisomerase 6 subunit B OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=top6B PE=3 SV=1
Length = 564
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + IP++FG++L+GTK Q+RG+ G+G A+++++++TG P
Sbjct: 72 YKVIVEDNGPGIPEEYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITTGKPTR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + K N W G I++ V + + R +
Sbjct: 132 VITSTGGEIVEAWVK--IDVQKNEGKIVKKVKHPNPKGWRGTRIEMEVKDVKYVRSRQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A ++ V + F R ++ +P PVE K HP V + +
Sbjct: 190 YWYLKLTAIANPHA-----YIELVEPDGKLVVFPRSSEEIPKPPVEMKPHPKGVMVDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI----------GEMGPEFSPKMAVK----- 374
+ + + ++ +FL EF I + E LI E E K+ K
Sbjct: 245 TMAHRSKRSSVKRFLVSEFSRISEKKIEELIKYVAAIRLLKSEQNEEIKEKLREKLINGD 304
Query: 375 ----------------------------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
LT Q+ I + F+ KF P L P GE
Sbjct: 305 VDSVLRSFGRKWKKEVEKVAKIMEKPPEKLTWQEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G+ L P+ V + S +V+ G PF VE G++ GG+ G I R+ANR+PL
Sbjct: 365 ENIKRGLTGILKPEFVTAVTRSPKVYAGGIPFQVEVGLAYGGQI--SGSEILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W YKI+ + V V+++S +P+ TGK+ I D +EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYKIDSFDSAPLVVLVNVISVHVPYTSTGKQSIA-DIEEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ +L + K + Q +R++ L +
Sbjct: 481 YNEIRLALMDAARKLALYLGGKYRRMYQIKRRKTLEK 517
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP + + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGKIRSLTTIIHEAVTNSLDACEEAGILPTIRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>sp|Q5JH81|TOP6B_PYRKO Type 2 DNA topoisomerase 6 subunit B OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=top6B PE=3
SV=1
Length = 567
Score = 162 bits (409), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 221/458 (48%), Gaps = 59/458 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVVVEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFI-SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK- 268
+ +S + I ++ K+D+D +N + EK N W G I++ ++ N RSK
Sbjct: 132 VITSTGNDEIIEAWVKIDVD--KNEGKIVKKEKHPNPKGWRGTRIELEVK-NVKYMRSKQ 188
Query: 269 -ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLL 327
+ Y++ A+ P+A + + I F R +D +P PVE K HP V
Sbjct: 189 GVFWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSDYIPEPPVEMKPHPKGVLTDD 243
Query: 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI--------------GEMGPEFSPKMA- 372
+ L +T + T+ +FL EF I + LI ++ ++ K+
Sbjct: 244 VYRLAKKTRRNTVRRFLIGEFSRISDKKVDELIEYIAALRLIKTVEDKKLQEQYYQKLME 303
Query: 373 --VKS-------------------------LTSQQIVRIHQLFRQAKFDDPSGGCLSPAG 405
VK+ LT + I + F+ KF P L P G
Sbjct: 304 GHVKAVLRAFKGYTKVVKQVAKMMEKPPEKLTWHEAEEIVEAFKYMKFLAPPTHGLRPIG 363
Query: 406 EYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIP 464
E N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G +++R+ANR+P
Sbjct: 364 EENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGIAYGG-EIPAGFDLYRYANRVP 422
Query: 465 LLFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKE 523
LLF+ G VT A + I+W YKI+ + + + +++VS +P+ GTGK+ I E
Sbjct: 423 LLFD-AGSCVTTQAARSIDWKRYKIDDLDRAPLVLMINVVSVHVPYTGTGKQSIA-SVDE 480
Query: 524 IASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
I + ++ AI +L++ + K + Q +R++ +
Sbjct: 481 IYNEIRLAIMDAARRLQTYLSGKHRKLAQVKRRKTFEK 518
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E P V + IEE+G
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKVRSLTTLVHEAVTNSLDACEEAGIPPYVRVEIEELGNE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVVV 76
>sp|C5A6R5|TOP6B_THEGJ Type 2 DNA topoisomerase 6 subunit B OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=top6B PE=3 SV=1
Length = 561
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVVVEDNGPGIPEKYITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S ++ K+D+D +N + EK N D WHG I++ ++ N RSK
Sbjct: 132 VITSTGDEIIEAWVKIDVD--KNEGKIVKKEKHPNPDGWHGTRIELEVK-NVKYMRSKQG 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 189 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPEPPVEMKPHPKGVLTDDV 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIG--------------------------KSLAERLI-G 361
+ +T + ++ +FL EF I + L ERL+ G
Sbjct: 244 YRMAKKTKRQSVRRFLIGEFSRISDKKVDELIEYVAALRLIKKVGDKKVQEQLYERLMKG 303
Query: 362 EMGPEFS------------PKMAVK---SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
E+ KM K LT + I + F+ KF P L P GE
Sbjct: 304 EVKAVLRSFRGYTKVVKQVAKMMEKPPEKLTWHEAEEIVEAFKYMKFLAPPTHGLRPIGE 363
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G + R+ANR+PL
Sbjct: 364 ENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EIPSGFELLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQT-QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A + I+W YK++ + + + +++VS +P+ GTGK+ I EI
Sbjct: 423 LFD-AGSCVTTQAARSIDWKRYKVDDLDRTPLVLMINVVSVHVPYTGTGKQSIA-SVDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L++ + K + Q +RK+ +
Sbjct: 481 YNEIRLAIMDAARRLQTYLSGKHRRLYQVKRKKTFEK 517
>sp|B6YVS9|TOP6B_THEON Type 2 DNA topoisomerase 6 subunit B OS=Thermococcus onnurineus
(strain NA1) GN=top6B PE=3 SV=1
Length = 563
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/457 (26%), Positives = 218/457 (47%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEKFITHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S ++ K+D+D +N + E+ N W G I++ ++ N RSK
Sbjct: 132 VITSTGGDIIEAWVKIDVD--KNEGKIVKKERHPNPKGWRGTRIELEVK-NVRYVRSKQG 188
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + + I F R ++ +P PVE K HP V +
Sbjct: 189 VYWYLKLTAIANPHAH-----IELIEPDGKLIVFPRSSEEVPKPPVEMKPHPKGVLTDDV 243
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGK--------------------------SLAERLI-G 361
+ +T + T+ +FL EF I L ERL+ G
Sbjct: 244 YRMAKKTRRNTVRRFLIGEFSRISDKKVDELIKYIAALRLIKTEKDKAVQDQLYERLMNG 303
Query: 362 EM--------GPEFSPKMAVK-------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
E+ G K K L+ + I + F+ KF P L P GE
Sbjct: 304 EVDKVLRSFKGYTKVVKQVAKLMEKPPEKLSWHEAEEIVEAFKYMKFLAPPTHGLRPIGE 363
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N+ G+ L P+ V + +V+ G PF VE G++ GG ++ G ++ R+ANR+PL
Sbjct: 364 ENIEKGLKGILKPEFVTAVTRPPKVYSGGIPFQVEVGLAYGG-EISSGFDLLRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G VT A + I+W YK++ + + + ++++S +P+ GTGK+ I + EI
Sbjct: 423 LFD-AGSCVTTLAARSIDWKRYKVDDLERAPVVLMINVISVHVPYTGTGKQSIA-NVDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ AI +L++ + K + Q +RK+ +
Sbjct: 481 HNEIRLAIMDAARRLQTYLSGKHRRLYQVKRKKTFEK 517
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T V E V NSLD+ E LP V + IEE+G+
Sbjct: 11 FKIQSVSEFFRRNAAMLGYTGKIRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGRE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>sp|Q9V135|TOP6B_PYRAB Type 2 DNA topoisomerase 6 subunit B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=top6B PE=3 SV=1
Length = 564
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 214/457 (46%), Gaps = 58/457 (12%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P + IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEEYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
+ +S ++ K ID+ +N + K N W G I++ V + + + +
Sbjct: 132 VITSTGGEIVEAWVK--IDVQKNEGKIVKKLKHPNPKGWRGTRIELEVKDVKYVRSKQGV 189
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIK 329
Y++ A+ P+A + V + F R ++ +P PVE K HP V + +
Sbjct: 190 YWYLKLTAIANPHAH-----IELVEPDGKLVVFPRSSEDIPEPPVEMKPHPKGVMVDDVY 244
Query: 330 GLIAETSKGTLLQFLQHEFVNIGKSLAERLI----------GEMGPEFSPKMAVK----- 374
+ + + ++ +FL EF I + LI E E K+ K
Sbjct: 245 TMAHRSKRSSVRRFLVSEFSRISDKKVDELIKYITALRLIKSETNKEVKEKLYEKLVSGD 304
Query: 375 ----------------------------SLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGE 406
LT + I + F+ KF P L P GE
Sbjct: 305 VDSVLRAFGRKWKKELEKVAKIMDKSPEKLTWHEAEEIVEAFKLMKFLAPPTHGLRPIGE 364
Query: 407 YNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPL 465
N++ G+ L P+ V + + +V+ G PF VE G++ GG+ QG I R+ANR+PL
Sbjct: 365 ENIKKGLTSILKPEFVTAVTRAPRVYAGGIPFQVEVGLAYGGQI--QGSEILRYANRVPL 422
Query: 466 LFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTKEI 524
LF+ G V+T +A++ I+W YKI+ + V V++VS +P+ TGK+ I D EI
Sbjct: 423 LFDAGSCVIT-SAVRSIDWKRYKIDSFDSAPLVVLVNVVSVHVPYTSTGKQSIA-DIDEI 480
Query: 525 ASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561
+ ++ A+ +L + K + Q +R++ L +
Sbjct: 481 HNEIRLALMDAARRLSFYLGGKFRRMYQVKRRKTLEK 517
>sp|O27088|TOP6B_METTH Type 2 DNA topoisomerase 6 subunit B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=top6B PE=3 SV=1
Length = 523
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 208/419 (49%), Gaps = 27/419 (6%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEI 211
Y + +DNG G+P IP +F + +G+K+ Q+RG+ GLG ++ S+M+TG P+++
Sbjct: 74 YILRHQDNGPGIPEKYIPKVFCTMFAGSKFRNIQSRGQQGLGCSGCVLLSQMTTGKPVKV 133
Query: 212 SSSMRSHNFISFCK--LDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG-NWTTYRSK 268
S + + K L +D+ +N + EK E + G I++ + +++
Sbjct: 134 ISGTMENGELKGVKMTLKMDVKKN--QGLILEKEEVEVDGTGVCIELHFKDVSYSLSEQG 191
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV---DL 325
Y+R+ + P+A+ +F + V F+R +DV+PP+P E HP V DL
Sbjct: 192 AYEYIRRTMIANPHARIVFN--DPTGNRYV---FNRASDVIPPMPKEVLPHPWGVTADDL 246
Query: 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIH 385
+ + + G++L+ ++ E L G + PK +K ++QIV
Sbjct: 247 IFMAKHTDKRRFGSMLKSNLSRMSSMKIKELEELTG-IDLNKRPK-DMKWEEAEQIV--- 301
Query: 386 QLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVS 444
+ F++ KF P L P GE + G+ + L P+ AT + + + G FIVEAG++
Sbjct: 302 EAFKKMKFMSPPTSGLIPIGEEQIDKGMKEILQPEFTATVTRKPKTYRGGIAFIVEAGIA 361
Query: 445 VGGKDVK-----QGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGV 498
GG + + I RFANR+PL F+ G +T +K ++W Y I ++ I +
Sbjct: 362 YGGNSGRLVGDQRKAEIMRFANRVPLTFDAGSCAITE-GVKSLDWKRYGIRDLENAPISI 420
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
FV++VST +P+ TGK+ + + EI ++ A +L + +K +E+ +R +
Sbjct: 421 FVNVVSTNVPYLSTGKQSVSPEP-EILGEIRQATMIVARKLHKYLRKKKAAKEEAQRAK 478
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ ++ +P+EFF +NK + GF +SL EL+ NS D+AE LP ++I ++ I
Sbjct: 10 DEGFQELTPSEFFRKNKQMLGFTGKIRSLTIVFHELITNSFDAAEEAGILPEIKIDLKRI 69
Query: 80 GKSKF 84
GK +
Sbjct: 70 GKDHY 74
>sp|Q8U0K8|TOP6B_PYRFU Type 2 DNA topoisomerase 6 subunit B OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=top6B PE=3
SV=1
Length = 568
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 123/455 (27%), Positives = 212/455 (46%), Gaps = 60/455 (13%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y+V +DNG G+P D IP++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 72 YKVIVEDNGPGIPEDYIPHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 131
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSK-- 268
+ +S + + ID+ +N + K N RW G I++ ++ N RSK
Sbjct: 132 VITSTGDDEIVE-AWVKIDVQKNEGKIVKKIKHPNPKRWRGTRIELEVK-NVKYVRSKQG 189
Query: 269 ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLI 328
+ Y++ A+ P+A + V I F R ++ +P PVE K HP V +
Sbjct: 190 VYWYLKLTAIANPHAH-----IELVEPDGKLIVFPRSSEDIPEPPVEMKPHPKGVMTDDV 244
Query: 329 KGLIAETSKGTLLQFLQHEFV---------------------------NIGKSLAERL-- 359
+ + + T+ +FL EF N+ L ERL
Sbjct: 245 YTMAHRSKRSTVRRFLVSEFSRISDKKVDELVLYIAALRLINREVTDQNLKSQLIERLAN 304
Query: 360 --IGEMGPEFSPKM-------------AVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPA 404
+ ++ F K + LT + I + F+ KF P L P
Sbjct: 305 GEVEKVLKSFGRKWKKVVEEVEKIMEKPPEKLTWHEAEEIVEAFKLMKFLAPPTYGLRPI 364
Query: 405 GEYNLRLGIIKELHPDMVATYSGSAQVFEGH-PFIVEAGVSVGGKDVKQGLNIFRFANRI 463
GE N+ G+ L P+ V + +V+ G PF VE G++ GG+ I R+ANR+
Sbjct: 365 GEENIEKGLSSILRPEFVTAVTRPPKVYSGGIPFQVEVGIAYGGEITNS--EILRYANRV 422
Query: 464 PLLFEQGGDVVTRTAMKRINWSSYKINQTQDK-IGVFVSIVSTKIPFKGTGKEYIGDDTK 522
PLLF+ G V+T +A++ I+W Y++ + + V V++VS +P+ TGK+ I
Sbjct: 423 PLLFDAGSCVIT-SAVRSIDWRRYRVESFDNAPLVVLVNVVSVHVPYTSTGKQSIA-SID 480
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
EI + ++ A+ + +L + + K + Q RK+
Sbjct: 481 EIYNEIRLALMEAARRLAAYLGGKYRRLYQIRRKK 515
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP V + IEE+GK
Sbjct: 11 FKVQSVSEFFRRNAAMLGYTGSIRSLTTVIHEAVTNSLDACEEAGILPYVRVEIEELGKE 70
Query: 83 KFNSMI 88
+ ++
Sbjct: 71 HYKVIV 76
>sp|Q3IPW6|TOP6B_NATPD Type 2 DNA topoisomerase 6 subunit B OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=top6B PE=3 SV=1
Length = 798
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 11/216 (5%)
Query: 146 RGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMS 204
RG+ +YR+T +DNG G+ + IP +FG++L G+++ +QTRG+ G+G A+++S+++
Sbjct: 81 RGD--YYRLTVEDNGPGITKEQIPKVFGKLLYGSRFHAREQTRGQQGIGISAAVLYSQLT 138
Query: 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT 264
+G P +I+S SH+ + +L ID N P + HE+ +R HG I++ +EGN
Sbjct: 139 SGKPAKITSKTDSHSSAQYFELTIDTDTNEPEID-HEREATWERPHGTRIELEMEGNMRA 197
Query: 265 YRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVD 324
R ++ Y++ AV+ P+A+ F E + + R T+ +PP E + HP V+
Sbjct: 198 -RKQLHDYIKYTAVVNPHARVEFH------EPEDSFKSERATEELPPETEEIRPHPHGVE 250
Query: 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
L + ++ T +L FLQ EF +G A+ +I
Sbjct: 251 LGTLLKMLDATDSYSLSGFLQAEFTRVGNKTADGVI 286
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 350 NIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNL 409
N+ +++ ER + P+ P + + R+ + R P CL+P E +
Sbjct: 461 NVVEAVWERAV--TVPDEPPTVTEVADNRDAAARLLEAMRSTDILSPPTDCLAPISEDLV 518
Query: 410 RLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQG-LNIFRFANRIPLLFE 468
+ G+ KE + + + A V G PF+VE G++ GG G + RFANR+PL+++
Sbjct: 519 KAGLKKEYDAEFYTSVTRDASVHGGDPFVVEVGIAHGGDIAVDGSVETLRFANRVPLVYQ 578
Query: 469 QGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIPFKGTGKEYIGDDTK 522
+G T +K +NW +Y ++Q + V + ST +PF K+ + +
Sbjct: 579 RGA-CATVDVLKGVNWRNYGLDQPGGSGMPSGPAVIMVHVASTSVPFTSESKDAVA-NIP 636
Query: 523 EIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNL 559
EI ++ A+QQ L+S + +K + E++ RK+++
Sbjct: 637 EIEDELRLALQQAGRDLQSHL-KKQRSLEKRRRKQDV 672
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK + GFD+ K+L T V+E V+N+LD+AE LP + + IE+ G
Sbjct: 29 SIAEFFEKNKQMLGFDSDAKALVTAVKEAVDNALDAAEEAGILPDIYVEIEDRG 82
>sp|Q5V4R5|TOP6B_HALMA Type 2 DNA topoisomerase 6 subunit B OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=top6B PE=3 SV=1
Length = 796
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 113/213 (53%), Gaps = 8/213 (3%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y++ +DNG G+ + P +FG++L G+++ +Q RG+ G+G A+++S++++G P
Sbjct: 81 YYKLVVEDNGPGITKEQAPKIFGKLLYGSRFHAREQNRGQQGIGISAAVLYSQLTSGKPA 140
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKI 269
+I+S + + + +L +D N P + + E +R HG I++ +E N RS +
Sbjct: 141 KITSRPKGQDEAQYFELIVDTDTNEPEISVDETT-TWERPHGTRIELEMEANMRA-RSTL 198
Query: 270 LHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDV-MPPVPVETKHHPSSVDLLLI 328
Y++ AV+ P+A+ F + +++F R +P E + HP V+L +
Sbjct: 199 RDYIQDTAVVNPHARVEFDEPG----LDESLKFERAERAELPDETEEIRPHPHGVELGTL 254
Query: 329 KGLIAETSKGTLLQFLQHEFVNIGKSLAERLIG 361
++ T ++ F+Q EF +G A+ +I
Sbjct: 255 LKMLEATDSYSVSGFMQEEFTRVGGKTADSVIA 287
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 388 FRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGG 447
R+ P CLSP + G+ KE D A + A V G PFIVEAG++ GG
Sbjct: 495 MRETDIIAPPTDCLSPISAELVEEGLRKEFDADFYAASTRDASVHGGDPFIVEAGIAYGG 554
Query: 448 KDVKQG-LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFV 500
+ +G +++ RFANR+PL++++G T +K I W +Y ++Q + + V
Sbjct: 555 ELESEGTVDVMRFANRVPLVYQRGA-CATTDVVKSIRWRNYNLDQPGGSGIPKGPAVIMV 613
Query: 501 SIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
+ ST +PF K+ I + E+ ++ AI++ +LKS + ++ ++++E++ L+
Sbjct: 614 HVASTNVPFTSESKDAIA-NVPEMEDEIELAIREAARELKSYLNKRRSMQQRREKQDKLA 672
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 27 SPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIG 80
S AEFF +NK++ GFD+ ++L T V+E V+N+LD+ E LP + + I+E G
Sbjct: 26 SIAEFFEKNKHMLGFDSEARALVTAVKEAVDNALDACEEAGILPDIYVEIQESG 79
>sp|C6A3G4|TOP6B_THESM Type 2 DNA topoisomerase 6 subunit B OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=top6B PE=3 SV=1
Length = 566
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 104/190 (54%), Gaps = 5/190 (2%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + F+ F P L P GE N+ G+ L P+ V + + +V+
Sbjct: 335 KKLTWHEAEEIVEAFKYMTFLAPPTHGLRPIGEENIEKGLTGILRPEFVTSVTRPPKVYR 394
Query: 434 GH-PFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQT 492
G PF VE G++ GG ++ G ++ R+ANR+PLLF+ G V+T +A + I+W Y+++
Sbjct: 395 GGIPFQVEVGLAFGG-ELSSGFDLLRYANRVPLLFDAGSCVIT-SAARNIDWKRYRVDDV 452
Query: 493 -QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDRE 551
+ + + V++VS +P+ TGK+ + ++ +EI ++ A+ +L + K +
Sbjct: 453 DRAPLALLVNVVSVHVPYTSTGKQSVANE-EEIYEEIRLAVMDVARRLAKYLGGKHRKLY 511
Query: 552 QQERKRNLSR 561
Q +R++ L +
Sbjct: 512 QVKRRKTLEK 521
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK-QTRGKFGLGAKMALIWSKMSTGLPIE 210
Y++ +DNG G+P I ++FG++L+GTK Q+RG+ G+G A++++++++G
Sbjct: 74 YKIIVEDNGPGIPEKFIAHVFGKMLAGTKAHRNIQSRGQQGIGISGAVMFAQITSGKATR 133
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQV-VIEGNWTTYRSKI 269
I +S I + ID+ +N + K N W G I++ V + + + +
Sbjct: 134 IITSTGEEEIIE-AWVGIDVDKNEGKIFKKIKHPNPTGWRGTRIEMEVKDVRYIRSKQGV 192
Query: 270 LHYMRQMAVITPYAQFLF 287
Y++ A+ P+A F
Sbjct: 193 YWYLKLTAIANPHAHIEF 210
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K +S +EFF N + G+ +SL T + E V NSLD+ E LP V + IEE+G
Sbjct: 13 FKIQSVSEFFRRNAAMLGYTGKLRSLTTLIHEAVTNSLDACEEAGILPYVRVEIEELGTE 72
Query: 83 KFNSMI 88
+ ++
Sbjct: 73 HYKIIV 78
>sp|Q9HR31|TOP6B_HALSA Type 2 DNA topoisomerase 6 subunit B OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=top6B PE=3
SV=1
Length = 804
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P+
Sbjct: 82 YYTLIVEDNGPGITNAQIPKIFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPV 141
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHV----HLHEKRENKDRWHGAEIQVVIEGNWTTY 265
I S + + +L ID N P + + + + HG I++ ++ N
Sbjct: 142 RIESRTQDSETANVYELIIDTDTNEPEISAETEVSAAKSDLRGTHGTRIEMALDANMRA- 200
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH---HPSS 322
R ++ Y++ AV+ P+A+ E+ E ++ R + +P ET HP
Sbjct: 201 RGQLHDYIKHTAVVNPHARI------ELQEPGGELKSERAEEA--SLPAETDEILPHPHG 252
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
V+L + ++AET ++ FLQ EF +G A +I
Sbjct: 253 VELGTLIKMLAETDSHSVSGFLQSEFTRVGSKTATGII 290
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CLSP L G+ E D A + A V G PFIVEAG++ GG D + G+
Sbjct: 505 PPTSCLSPIEADQLEAGLRTEFDADFYAAATRDADVHGGDPFIVEAGIAYGGDIDSEGGV 564
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T + I W +Y ++Q Q + V + ST +P
Sbjct: 565 QLMRFANRVPLVYQRGA-CATTDVLGDIGWRNYNLSQPGGSGLPQGPAVIMVHVASTNVP 623
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
F K+ I + EI + ++ A+++ +LKS + ++ R++Q+++
Sbjct: 624 FTSESKDAIA-NVPEIEAEIELAVREAARELKSFLQKRQSMRKRQQKQ 670
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + + I E G+
Sbjct: 24 REISVAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEISE-GRDY 82
Query: 84 FNSMI 88
+ ++
Sbjct: 83 YTLIV 87
>sp|B0R4D3|TOP6B_HALS3 Type 2 DNA topoisomerase 6 subunit B OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=top6B PE=3 SV=1
Length = 804
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-GLKQTRGKFGLGAKMALIWSKMSTGLPI 209
+Y + +DNG G+ + IP +FG++L G+++ +Q+RG+ G+G A+++S++++G P+
Sbjct: 82 YYTLIVEDNGPGITNAQIPKIFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLTSGKPV 141
Query: 210 EISSSMRSHNFISFCKLDIDIHRNIPHV----HLHEKRENKDRWHGAEIQVVIEGNWTTY 265
I S + + +L ID N P + + + + HG I++ ++ N
Sbjct: 142 RIESRTQDSETANVYELIIDTDTNEPEISAETEVSAAKSDLRGTHGTRIEMALDANMRA- 200
Query: 266 RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH---HPSS 322
R ++ Y++ AV+ P+A+ E+ E ++ R + +P ET HP
Sbjct: 201 RGQLHDYIKHTAVVNPHARI------ELQEPGGELKSERAEEA--SLPAETDEILPHPHG 252
Query: 323 VDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLI 360
V+L + ++AET ++ FLQ EF +G A +I
Sbjct: 253 VELGTLIKMLAETDSHSVSGFLQSEFTRVGSKTATGII 290
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
P CLSP L G+ E D A + A V G PFIVEAG++ GG D + G+
Sbjct: 505 PPTSCLSPIEADQLEAGLRTEFDADFYAAATRDADVHGGDPFIVEAGIAYGGDIDSEGGV 564
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ------TQDKIGVFVSIVSTKIP 508
+ RFANR+PL++++G T + I W +Y ++Q Q + V + ST +P
Sbjct: 565 QLMRFANRVPLVYQRGA-CATTDVLGDIGWRNYNLSQPGGSGLPQGPAVIMVHVASTNVP 623
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
F K+ I + EI + ++ A+++ +LKS + ++ R++Q+++
Sbjct: 624 FTSESKDAIA-NVPEIEAEIELAVREAARELKSFLQKRQSMRKRQQKQ 670
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 24 KQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSK 83
++ S AEFF +NK++ GFD+ + L T V+E V+N+LD+ E LP + + I E G+
Sbjct: 24 REISVAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEISE-GRDY 82
Query: 84 FNSMI 88
+ ++
Sbjct: 83 YTLIV 87
>sp|Q58434|TOP6B_METJA Type 2 DNA topoisomerase 6 subunit B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=top6B PE=3 SV=2
Length = 660
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 374 KSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 433
K LT + I + +F P L P G N+ + + L PD V + + + ++
Sbjct: 436 KELTWDEAEMIVNCLQSMEFMAPPTTGLRPIGAENIEKSLKELLQPDFVKAITRNPKTYK 495
Query: 434 GH-PFIVEAGVSVGGKDVKQG-----LNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSY 487
G PF VE ++ GG +QG + I RFAN +PLL++ +T+ A+K INW Y
Sbjct: 496 GGIPFAVEVAIAYGGNAGRQGDEGRRMEIMRFANHVPLLYDASACGLTK-AVKSINWKRY 554
Query: 488 KINQTQDKIGVFVSIVSTKIPFKGTGKEYIG---DDTKEIASAVKSAIQQCCIQLKSKIV 544
+ I VFV+++ST IP+ GK+ + ++ +EI + ++ A+ C +L+ K +
Sbjct: 555 GLRGEDAPITVFVNLISTFIPYTSAGKQAVACSENENEEIYNEIRHALMICGRELE-KYL 613
Query: 545 RKIQDREQQERKR 557
+I+ ++E+KR
Sbjct: 614 SRIRREAEEEKKR 626
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 96/174 (55%), Gaps = 11/174 (6%)
Query: 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK-YGLKQTRGKFGLGAKMALIWSKMSTGL 207
A Y+V +DNG G+P + IP +FG++L+G+K + Q+RG+ G+GA L++S+++TG
Sbjct: 71 ADHYKVAVEDNGPGIPLEFIPKVFGKMLAGSKMHRFIQSRGQQGIGAAGVLLFSQITTGK 130
Query: 208 PIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI-EGNWTTYR 266
P++I +S N I ++ +++ +N + K+ K +W G ++ E ++
Sbjct: 131 PLKIITSTGDGN-IYEVEVKMNVEKN--EGEIVSKKVRKGKWRGTRVEGEFKEVSYNRGE 187
Query: 267 SKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320
Y+R++++ TP+A+ + K + + F R + +P P E K HP
Sbjct: 188 FGPFEYLRRISLATPHAKIVLK------DPYGEVVFDRVVNELPKKPEEMKPHP 235
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 23 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKS 82
K+ S AEFF +NK++ G+ +SL T + ELV NSLD+ E LP +++ IE++G
Sbjct: 13 FKEHSVAEFFRKNKHMLGYSGKIRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGAD 72
Query: 83 KF 84
+
Sbjct: 73 HY 74
>sp|P35164|RESE_BACSU Sensor histidine kinase ResE OS=Bacillus subtilis (strain 168)
GN=resE PE=3 SV=1
Length = 589
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 153 RVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 199
++ KD+G G+P +D+P +F R K +TRG+ G G +A++
Sbjct: 515 KIDIKDSGSGIPEEDLPFIFERFYKADK---ARTRGRAGTGLGLAIV 558
>sp|Q9UXU2|VATI_PYRAB V-type ATP synthase subunit I OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=atpI PE=3 SV=1
Length = 659
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 56 VENSLDSAESISELPVVEITIEEI-GKSKFNSMIGLVDRERVDTKLYDDYETEKARERRL 114
+++SL++ E +S L I IE + G+S + +GLVDRE+V+ + + E + R L
Sbjct: 133 LKDSLNALELLSSL---NIEIENLRGRSFLSVEVGLVDREKVENLIKELEEIAEGRVFTL 189
Query: 115 AKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGR 174
K +L AK+ + +++ S K + F ++ + G+G+P D IP R
Sbjct: 190 RK-----DLAAKSLLVVVSLRKDSG-KVISLLAKYGFEKIEIPE-GEGLPKDLIPKYIER 242
Query: 175 V 175
+
Sbjct: 243 I 243
>sp|A5E6M3|RTC1_LODEL Restriction of telomere capping protein 1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=RTC1 PE=3 SV=1
Length = 1163
Score = 35.8 bits (81), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 24/129 (18%)
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG---GCLSPAGEYNLRLGIIKELHPDMV 422
++SP V++ T I+ +H KFD SG SP ++NL G + LH
Sbjct: 230 QYSPHSVVRNKTC--ILSVHDSGALCKFDLRSGSGSNMYSPDRKWNLHAGPVLSLHI--- 284
Query: 423 ATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRI 482
HP + V+ GG+D K + +F ++ L + T ++ ++
Sbjct: 285 ------------HP--EKEYVATGGRDHK--ICVFNYSEGRSLRTTPENIINTYGSILKV 328
Query: 483 NWSSYKINQ 491
WSSY +NQ
Sbjct: 329 RWSSYLVNQ 337
>sp|Q84TI3|OBE4_ARATH Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2
Length = 1162
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 GNDGDPKKRKSKSPKTPNESALKQKSPAEFFA--ENKNIAGFDNPGKSLYTTVRELVENS 59
GNDGD K + + P+ E+AL ++PAE+ + + ++ + GK+ + LV N+
Sbjct: 377 GNDGDANKAEVEGPECVEENALANRTPAEYISSVSDSSVHKCKDKGKNSDVPLTHLVGNA 436
Query: 60 LDSAESISEL 69
L S +L
Sbjct: 437 LFSESKTEDL 446
>sp|Q8D926|ASTE_VIBVU Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain CMCP6)
GN=astE PE=3 SV=2
Length = 342
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 359 LIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD 395
LI E+ PE PK A+ S+ IVR+HQ F +FDD
Sbjct: 244 LIAEVTPEHLPKPAITYRVSRTIVRLHQDF-DFRFDD 279
>sp|Q7MLE8|ASTE_VIBVY Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain YJ016)
GN=astE PE=3 SV=1
Length = 342
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 359 LIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD 395
LI E+ PE PK A+ S+ IVR+HQ F +FDD
Sbjct: 244 LIAEVTPEHLPKPAITYRVSRTIVRLHQDF-DFRFDD 279
>sp|A6VD59|MUTL_PSEA7 DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain
PA7) GN=mutL PE=3 SV=1
Length = 633
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 113 RLAKEARAQELQAKNAALGKKVKEPSATKGAK------GRGEASFYRVTCKDNGKGMPHD 166
RLA + A E+ + A++ K++ E S GA+ +G RV +D+G+G+P D
Sbjct: 13 RLANQIAAGEVVERPASVAKELLENSLDAGARRIDVEVEQGGVKLLRV--RDDGRGIPAD 70
Query: 167 DIPNMFGR 174
D+P R
Sbjct: 71 DLPLALAR 78
>sp|O48929|ETR1_TOBAC Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1
Length = 738
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 128 AALGKKVKEPSATKGAKGRGEASFY-RVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQT 186
AA + + +P A + + E FY RV KD G G+ DIP +F + K +
Sbjct: 484 AAKSESLSDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDIPKLFCKFAQNQALATKSS 543
Query: 187 RGKFGLGAKMA 197
G GLG ++
Sbjct: 544 GGT-GLGLAIS 553
>sp|Q8E3U2|MURC_STRA3 UDP-N-acetylmuramate--L-alanine ligase OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=murC PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 418 HPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLL---FEQGGDVV 474
HPD F + V+ G+ + G+D K + ++ P+ FE D +
Sbjct: 177 HPDYFTGLEDVFNAFNDYAKQVQKGLFIYGEDSK----LHEITSKAPIYYYGFEDSNDFI 232
Query: 475 TRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQ 534
+ + +N S +K+ Q++IG F +P GK I + T IA+ I
Sbjct: 233 AKDITRTVNGSDFKVFYNQEEIGQF------HVP--AYGKHNILNATAVIANLYIMGIDM 284
Query: 535 CCIQLKSKIVRKIQDR 550
+ K ++ R
Sbjct: 285 ALVAEHLKTFSGVKRR 300
>sp|Q1I447|MUTL_PSEE4 DNA mismatch repair protein MutL OS=Pseudomonas entomophila (strain
L48) GN=mutL PE=3 SV=1
Length = 632
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 113 RLAKEARAQELQAKNAALGKKVKEPSATKGAK------GRGEASFYRVTCKDNGKGMPHD 166
RLA + A E+ + A++ K++ E S GA+ +G RV +DNG G+ D
Sbjct: 13 RLANQIAAGEVVERPASVAKELLENSLDSGARRIEVEVEQGGVKLLRV--RDNGGGIAPD 70
Query: 167 DIPNMFGRVLSGTKYGLKQTRGKFGLG 193
D+P R + L+ G LG
Sbjct: 71 DLPLALARHATSKIRELEDLEGVLSLG 97
>sp|Q02F72|MUTL_PSEAB DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=mutL PE=3 SV=1
Length = 633
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 113 RLAKEARAQELQAKNAALGKKVKEPSATKGAK------GRGEASFYRVTCKDNGKGMPHD 166
RLA + A E+ + A++ K++ E S G++ +G RV +D+G+G+P D
Sbjct: 13 RLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRV--RDDGRGIPAD 70
Query: 167 DIPNMFGR 174
D+P R
Sbjct: 71 DLPLALAR 78
>sp|Q9HUL8|MUTL_PSEAE DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mutL
PE=3 SV=1
Length = 633
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 113 RLAKEARAQELQAKNAALGKKVKEPSATKGAK------GRGEASFYRVTCKDNGKGMPHD 166
RLA + A E+ + A++ K++ E S G++ +G RV +D+G+G+P D
Sbjct: 13 RLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRV--RDDGRGIPAD 70
Query: 167 DIPNMFGR 174
D+P R
Sbjct: 71 DLPLALAR 78
>sp|B7V209|MUTL_PSEA8 DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain
LESB58) GN=mutL PE=3 SV=1
Length = 633
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 113 RLAKEARAQELQAKNAALGKKVKEPSATKGAK------GRGEASFYRVTCKDNGKGMPHD 166
RLA + A E+ + A++ K++ E S G++ +G RV +D+G+G+P D
Sbjct: 13 RLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRV--RDDGRGIPAD 70
Query: 167 DIPNMFGR 174
D+P R
Sbjct: 71 DLPLALAR 78
>sp|O57721|VATI_PYRHO V-type ATP synthase subunit I OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=atpI PE=3 SV=1
Length = 659
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 61 DSAESISELPVVEITIEEI-GKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEAR 119
D+ ES+ L + + +E + G S N +GLVDRE+ + + + + + R + K+
Sbjct: 135 DTLESLQILSNLNVEVEYLRGGSFLNVDVGLVDREKAEPLIKEISDVVEGRVHIVRKDIG 194
Query: 120 AQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIP 169
A+ L + ++E S +K + + F ++ + GKG+P D IP
Sbjct: 195 ARTLLVVVS-----LREDS-SKVSSVLAKYGFEKIEVPE-GKGLPRDLIP 237
>sp|Q3JZS0|MURC_STRA1 UDP-N-acetylmuramate--L-alanine ligase OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=murC PE=3 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Query: 418 HPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLL---FEQGGDVV 474
HPD F + V+ G+ + G+D K + + P+ FE D +
Sbjct: 177 HPDYFTGLEDVFNAFNDYAKQVQKGLFIYGEDPK----LHEITSEAPIYYYGFEDSNDFI 232
Query: 475 TRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQ 534
+ + +N S +K+ Q++IG F +P GK I + T IA+ I
Sbjct: 233 AKDITRTVNGSDFKVFYNQEEIGQF------HVP--AYGKHNILNATAVIANLYIMGIDM 284
Query: 535 CCIQLKSKIVRKIQDR 550
+ K ++ R
Sbjct: 285 ALVAEHLKTFSGVKRR 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,720,921
Number of Sequences: 539616
Number of extensions: 8851634
Number of successful extensions: 25985
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 25756
Number of HSP's gapped (non-prelim): 112
length of query: 561
length of database: 191,569,459
effective HSP length: 123
effective length of query: 438
effective length of database: 125,196,691
effective search space: 54836150658
effective search space used: 54836150658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)