Query 008575
Match_columns 561
No_of_seqs 383 out of 2428
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mu5_A Type II DNA topoisomera 100.0 6E-115 2E-119 940.0 49.6 463 20-557 5-470 (471)
2 2zbk_B Type 2 DNA topoisomeras 100.0 2E-112 6E-117 931.3 46.3 466 21-561 5-473 (530)
3 2q2e_B Type 2 DNA topoisomeras 100.0 1E-100 5E-105 849.5 36.2 465 19-561 9-481 (621)
4 1kij_A DNA gyrase subunit B; t 99.9 1.6E-20 5.5E-25 198.7 24.6 343 20-559 5-389 (390)
5 1s16_A Topoisomerase IV subuni 99.8 2.3E-18 7.8E-23 182.3 30.4 181 19-288 6-203 (390)
6 1ei1_A DNA gyrase B, GYRB; ATP 99.8 3.5E-18 1.2E-22 181.0 30.7 343 18-559 4-390 (391)
7 3na3_A DNA mismatch repair pro 99.8 3.1E-18 1.1E-22 178.9 15.2 121 152-288 58-196 (348)
8 1b63_A MUTL; DNA mismatch repa 99.7 1.3E-17 4.3E-22 172.9 15.9 122 152-288 54-192 (333)
9 1zxm_A TOPO IIA ATPase, DNA to 99.7 1.2E-17 4.2E-22 177.3 15.4 188 20-288 3-230 (400)
10 4duh_A DNA gyrase subunit B; s 99.7 2.5E-17 8.5E-22 162.2 15.2 184 19-288 6-206 (220)
11 3h4l_A DNA mismatch repair pro 99.7 2.2E-17 7.4E-22 173.6 15.3 122 151-288 54-193 (367)
12 1h7s_A PMS1 protein homolog 2; 99.7 2.3E-17 7.9E-22 173.2 12.9 122 152-288 64-203 (365)
13 4emv_A DNA topoisomerase IV, B 99.7 7.6E-17 2.6E-21 159.4 14.0 186 18-288 11-212 (226)
14 3fv5_A DNA topoisomerase 4 sub 99.7 2.2E-16 7.4E-21 153.3 15.1 155 49-288 19-189 (201)
15 3cwv_A DNA gyrase, B subunit, 99.7 1.7E-16 6E-21 166.9 14.7 315 25-545 8-346 (369)
16 3lnu_A Topoisomerase IV subuni 99.7 7.6E-15 2.6E-19 156.1 25.0 180 20-288 26-222 (408)
17 1pvg_A DNA topoisomerase II; G 99.7 4E-16 1.4E-20 166.5 15.3 192 16-288 10-243 (418)
18 3t0h_A Heat shock protein HSP 99.6 6.3E-16 2.2E-20 153.0 8.6 118 152-281 79-209 (228)
19 3o0i_A HSP90AA1 protein; HSP90 99.6 1.7E-15 5.9E-20 152.2 7.3 118 151-281 106-237 (256)
20 2wer_A ATP-dependent molecular 99.5 7E-15 2.4E-19 143.9 8.4 117 152-280 73-201 (220)
21 2ior_A Chaperone protein HTPG; 99.5 6.5E-15 2.2E-19 145.9 7.5 117 152-281 94-227 (235)
22 1yc1_A HSP 86, heat shock prot 99.5 1.9E-14 6.5E-19 145.2 7.6 118 152-281 115-243 (264)
23 1y4s_A Chaperone protein HTPG; 99.4 4.2E-13 1.4E-17 147.8 13.1 120 152-285 74-210 (559)
24 2c2a_A Sensor histidine kinase 99.4 6.3E-13 2.2E-17 128.8 12.3 112 45-228 136-247 (258)
25 2gqp_A Endoplasmin; GRP94, HSP 99.4 2.1E-13 7.1E-18 135.3 8.8 116 152-280 79-211 (236)
26 3nmq_A Heat shock protein HSP 99.4 2.3E-13 8E-18 135.5 7.4 116 151-278 85-211 (239)
27 3peh_A Endoplasmin homolog; st 99.4 5.3E-13 1.8E-17 135.6 9.5 120 152-282 93-224 (281)
28 2ioq_A Chaperone protein HTPG; 99.4 2E-13 6.8E-18 152.1 7.0 120 152-285 74-210 (624)
29 1qy5_A Endoplasmin; GRP94, NEC 99.4 1E-13 3.6E-18 140.2 3.9 118 152-281 75-208 (269)
30 1gkz_A [3-methyl-2-oxobutanoat 99.3 6.2E-12 2.1E-16 130.9 14.0 112 45-227 236-371 (388)
31 2q8g_A [pyruvate dehydrogenase 99.3 3.8E-12 1.3E-16 133.6 12.5 113 45-228 241-362 (407)
32 2e0a_A Pyruvate dehydrogenase 99.3 5E-12 1.7E-16 132.1 13.3 113 45-228 228-349 (394)
33 2btz_A Pyruvate dehydrogenase 99.3 6.1E-12 2.1E-16 131.3 11.9 113 45-228 229-349 (394)
34 2cg9_A ATP-dependent molecular 99.3 5.5E-12 1.9E-16 141.4 11.7 120 152-282 73-203 (677)
35 1y8o_A [pyruvate dehydrogenase 99.3 5.1E-12 1.7E-16 133.4 10.8 113 45-228 251-373 (419)
36 3ied_A Heat shock protein; HSP 99.3 2.7E-12 9.4E-17 129.0 8.0 119 149-278 127-261 (272)
37 1id0_A PHOQ histidine kinase; 99.3 1.3E-11 4.6E-16 109.6 11.6 101 45-226 42-142 (152)
38 1ysr_A Sensor-type histidine k 99.3 1.5E-11 5E-16 109.6 11.2 103 45-226 44-146 (150)
39 2o1u_A Endoplasmin; GRP94, HSP 99.3 4E-12 1.4E-16 142.4 9.1 121 152-285 92-230 (666)
40 3sl2_A Sensor histidine kinase 99.2 5.3E-11 1.8E-15 109.2 13.1 113 44-229 40-152 (177)
41 1bxd_A ENVZ(290-450), protein 99.2 3.3E-11 1.1E-15 108.8 11.1 103 45-226 45-147 (161)
42 3ttz_A DNA gyrase subunit B; p 99.2 8.4E-11 2.9E-15 113.9 12.8 146 45-288 29-179 (198)
43 3a0y_A Sensor protein; ATP-LID 99.2 1E-10 3.4E-15 103.5 11.4 92 45-215 45-136 (152)
44 1i58_A Chemotaxis protein CHEA 99.2 3.9E-11 1.3E-15 111.3 9.1 74 149-226 89-186 (189)
45 1r62_A Nitrogen regulation pro 99.2 5.4E-11 1.9E-15 105.8 9.5 112 45-227 46-157 (160)
46 3a0r_A Sensor protein; four he 99.2 6.9E-11 2.4E-15 117.9 10.1 101 46-227 243-343 (349)
47 3d36_A Sporulation kinase B; G 99.2 7.2E-11 2.5E-15 111.9 9.5 104 45-228 121-224 (244)
48 4ew8_A Sensor protein DIVL; si 99.1 1E-10 3.6E-15 113.0 10.2 102 46-228 154-255 (268)
49 3jz3_A Sensor protein QSEC; he 99.1 3E-11 1E-15 112.9 5.0 67 154-226 148-214 (222)
50 1b3q_A Protein (chemotaxis pro 99.0 6.3E-10 2.2E-14 116.3 9.9 76 149-228 148-247 (379)
51 1th8_A Anti-sigma F factor; SP 99.0 1.8E-09 6E-14 96.3 10.2 99 45-225 37-135 (145)
52 3ehg_A Sensor kinase (YOCF pro 99.0 3.3E-09 1.1E-13 92.9 11.5 77 46-215 39-115 (128)
53 4fpp_A Phosphotransferase; fou 98.9 1.3E-09 4.3E-14 106.8 8.0 100 45-226 144-245 (247)
54 4gfh_A DNA topoisomerase 2; to 98.9 5E-09 1.7E-13 123.9 13.4 186 19-284 8-231 (1177)
55 3ehh_A Sensor kinase (YOCF pro 98.9 5.9E-09 2E-13 97.9 11.3 85 47-227 130-214 (218)
56 3zxq_A Hypoxia sensor histidin 98.8 2E-08 6.7E-13 86.6 8.5 83 46-226 38-120 (124)
57 3zxo_A Redox sensor histidine 98.7 2.3E-08 7.9E-13 86.5 8.6 84 46-226 42-125 (129)
58 3ke6_A Protein RV1364C/MT1410; 97.0 0.0011 3.8E-08 69.6 7.4 41 39-79 288-329 (399)
59 1ixm_A SPO0B, protein (sporula 95.7 0.009 3.1E-07 57.2 4.9 27 150-176 144-170 (192)
60 3r8n_M 30S ribosomal protein S 95.3 0.025 8.5E-07 50.3 6.0 48 343-392 16-63 (114)
61 3twl_A Formamidopyrimidine-DNA 94.4 0.26 8.9E-06 50.6 11.7 74 315-391 145-222 (310)
62 3u6p_A Formamidopyrimidine-DNA 94.3 0.17 5.9E-06 50.9 9.9 75 314-391 131-209 (273)
63 1k82_A Formamidopyrimidine-DNA 93.8 0.44 1.5E-05 47.8 11.7 75 314-391 126-204 (268)
64 1k3x_A Endonuclease VIII; hydr 93.7 0.13 4.6E-06 51.4 7.6 76 315-392 124-205 (262)
65 2xzf_A Formamidopyrimidine-DNA 93.0 0.24 8.2E-06 49.8 8.3 74 315-391 130-207 (271)
66 3iz6_M 40S ribosomal protein S 93.0 0.18 6.3E-06 46.9 6.9 49 339-390 25-73 (152)
67 1ee8_A MUTM (FPG) protein; bet 92.9 0.25 8.6E-06 49.5 8.3 74 315-391 120-197 (266)
68 3u5c_S 40S ribosomal protein S 92.9 0.12 4E-06 47.9 5.4 43 346-390 33-75 (146)
69 3w0f_A Endonuclease 8-like 3; 92.2 0.3 1E-05 49.8 7.8 73 317-391 152-228 (287)
70 3j20_O 30S ribosomal protein S 92.1 0.13 4.6E-06 47.6 4.6 43 346-390 26-68 (148)
71 2xzm_M RPS18E; ribosome, trans 91.7 0.31 1.1E-05 45.5 6.6 51 337-390 25-75 (155)
72 2vqe_M 30S ribosomal protein S 91.6 0.17 5.7E-06 45.8 4.5 43 346-390 20-62 (126)
73 3vk8_A Probable formamidopyrim 86.8 0.89 3E-05 46.3 6.3 70 315-391 134-209 (295)
74 3doa_A Fibrinogen binding prot 83.4 1.3 4.4E-05 44.7 5.6 77 282-363 125-214 (288)
75 3fut_A Dimethyladenosine trans 68.8 12 0.0004 37.3 7.8 62 325-390 208-269 (271)
76 2gqf_A Hypothetical protein HI 61.6 17 0.00058 37.6 7.6 61 328-394 271-331 (401)
77 3v76_A Flavoprotein; structura 56.2 22 0.00076 37.0 7.5 64 326-395 288-351 (417)
78 3bbn_M Ribosomal protein S13; 47.3 2.6 9E-05 38.8 -1.2 47 337-387 57-103 (145)
79 1k4n_A Protein EC4020, protein 45.8 17 0.00057 35.0 4.0 59 252-322 116-181 (192)
80 1tdh_A NEI endonuclease VIII-l 45.2 4.1 0.00014 42.8 -0.3 75 314-391 131-232 (364)
81 1qyr_A KSGA, high level kasuga 43.5 51 0.0017 32.0 7.3 57 325-390 194-250 (252)
82 3cwv_A DNA gyrase, B subunit, 42.0 31 0.0011 35.9 5.8 12 149-160 51-62 (369)
83 1pvg_A DNA topoisomerase II; G 36.2 23 0.00077 37.7 3.7 76 438-519 292-377 (418)
84 3uzu_A Ribosomal RNA small sub 33.6 36 0.0012 33.7 4.5 58 326-392 219-276 (279)
85 2i0z_A NAD(FAD)-utilizing dehy 31.8 93 0.0032 32.1 7.5 56 333-393 316-371 (447)
86 3gru_A Dimethyladenosine trans 26.6 64 0.0022 32.3 4.9 65 326-390 216-287 (295)
87 3tqs_A Ribosomal RNA small sub 24.3 93 0.0032 30.3 5.5 54 326-388 201-254 (255)
88 4agr_A Galectin; sugar binding 20.2 48 0.0016 30.3 2.3 30 452-482 104-142 (146)
No 1
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=100.00 E-value=5.5e-115 Score=939.99 Aligned_cols=463 Identities=38% Similarity=0.673 Sum_probs=418.7
Q ss_pred ccccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccc
Q 008575 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTK 99 (561)
Q Consensus 20 ~~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~ 99 (561)
...++++|++|||.+|..+++|+++...|.++|.|||+||+||+.+.+.+|.|.|++....+
T Consensus 5 ~~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~------------------ 66 (471)
T 1mu5_A 5 KEKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------ 66 (471)
T ss_dssp ------CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET------------------
T ss_pred HHHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC------------------
Confidence 45789999999999999999999998999999999999999999988878899999977520
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhccccccc
Q 008575 100 LYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGT 179 (561)
Q Consensus 100 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tS 179 (561)
..+.+.|+|+|||+||++++++.+|++|++++
T Consensus 67 ------------------------------------------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 98 (471)
T 1mu5_A 67 ------------------------------------------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 98 (471)
T ss_dssp ------------------------------------------------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-
T ss_pred ------------------------------------------------cCcEEEEEEEECCCCCCHHHHHHHhccccccc
Confidence 13678999999999999999999999998899
Q ss_pred ccccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEec
Q 008575 180 KYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE 259 (561)
Q Consensus 180 K~~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~ 259 (561)
|....++.|++|+||+++..+++.+.|.+++|.|+..+....+.|.|.++...+.+.+....+.+....++||+|+|.+.
T Consensus 99 k~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~ 178 (471)
T 1mu5_A 99 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIP 178 (471)
T ss_dssp CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEE
T ss_pred ccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEc
Confidence 87544567889999999999999875544999999855544678888888777777776655442235689999999998
Q ss_pred CCcchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHHHhcCCc-
Q 008575 260 GNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG- 338 (561)
Q Consensus 260 ~n~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~~~t~~~- 338 (561)
.+|......|.++|+++|+.||+++|.|. +++++ .+.|.|.++.+|.+|.+++|||+|+|++.+++|+..++..
T Consensus 179 ~~~~e~~~~I~~~l~~~al~~p~v~i~l~----~~~~~-~~~~~r~~~~lp~~~~~~~p~~~G~~l~~~~~~~~~~~~~~ 253 (471)
T 1mu5_A 179 GDWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGN-VTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDY 253 (471)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEE----CTTCC-EEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHSTTCSSCC
T ss_pred CCcchHHHHHHHHHHHHHhHCCCeEEEEE----ECCce-EEEecccccccCCccceeecCCCchhHHHHHHHHHhcCCCc
Confidence 88876667899999999999999999998 66555 4889999999999999999999999999999999999998
Q ss_pred chHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCC-ccCCCCCCcCccchHHHHhhhhhhc
Q 008575 339 TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKEL 417 (561)
Q Consensus 339 tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~-~~~P~~~~LsPiGe~~l~~gl~k~~ 417 (561)
+|.+||+++|+|||.++|++||+. ++|+++++|++|+++|+.+|+++||+++ |++||++||||||||+|++||+|+|
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~lspig~~~~~~g~~~~~ 331 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILEL--AGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIF 331 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHH--TTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCCSTTCCCCCHHHHHHHHHHHH
T ss_pred chHHhhhccccccCHHHHHHHHHh--cCCCCCCChhhcCHHHHHHHHHHHHhccCccCCCccccCcCCHHHHHhhhhhcc
Confidence 999999999999999999999998 6899999999999999999999999998 9999999999999999999999999
Q ss_pred CCceEEEEecCcceecCCcEEEEEEeeecCccC-CCCceEEEeeccccccccCCCchhhhhhhcccCccccccCCCCCce
Q 008575 418 HPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV-KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKI 496 (561)
Q Consensus 418 ~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~-~~~~~i~RfANriPLlf~~g~~~it~~~~~~i~W~~Y~i~~~~~~~ 496 (561)
+|||++++||+|+||+||||||||||||||++. .++++|||||||||||||+||||+|+ +|++|||++|||+++.+|+
T Consensus 332 ~~~f~~~~~r~~~~~~g~pf~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~~~~~~~-~~~~~~w~~y~~~~~~~~~ 410 (471)
T 1mu5_A 332 NPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQM 410 (471)
T ss_dssp CCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGGGSHHHH-HHHHSCGGGGTCCSSCBCE
T ss_pred CceEEEEEecCCceecCCCEEEEEEeeccCCCCCCCCceEEEEeccCceeecCCcchhhh-hhccCChhhcCcCCCCCCE
Confidence 999999999999999999999999999999986 55899999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008575 497 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557 (561)
Q Consensus 497 ~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~~~r~~ 557 (561)
+||||||||||||||+|||+|| |+|||++||++|||+|||+|+.||+||++++++++|++
T Consensus 411 ~~~v~i~st~vp~~~~~k~~i~-~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~ 470 (471)
T 1mu5_A 411 VVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLL 470 (471)
T ss_dssp EEEEEEEESSCCBSSTTCCCBC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeccCCCCcCCCCccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999 79999999999999999999999999999999999875
No 2
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=100.00 E-value=1.9e-112 Score=931.28 Aligned_cols=466 Identities=38% Similarity=0.668 Sum_probs=418.4
Q ss_pred cccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEeccccccccccccccccccccc
Q 008575 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKL 100 (561)
Q Consensus 21 ~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~ 100 (561)
..++++|++|||.+|.++.+|.++...|.++|.|||+||+||+...+..|.|.|++....+
T Consensus 5 ~~~k~isi~eff~~~~~l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~------------------- 65 (530)
T 2zbk_B 5 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------- 65 (530)
T ss_dssp ---------CGGGTCCGGGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET-------------------
T ss_pred HHhhhcChhheeecCCCceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC-------------------
Confidence 4788999999999999999999988899999999999999999887777899999977520
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccc
Q 008575 101 YDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK 180 (561)
Q Consensus 101 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK 180 (561)
..+.+.|+|+|||+||++++++.+|++|++++|
T Consensus 66 -----------------------------------------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk 98 (530)
T 2zbk_B 66 -----------------------------------------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSK 98 (530)
T ss_dssp -----------------------------------------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCC
T ss_pred -----------------------------------------------cCceEEEEEEECCCCCCHHHHHHHhccccccCC
Confidence 136789999999999999999999999988999
Q ss_pred cccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecC
Q 008575 181 YGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEG 260 (561)
Q Consensus 181 ~~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~ 260 (561)
+....+.|++|+||+++..+++++.|.+++|.|...+....+.|.|.++...|.+.+....+......++||+|+|.+..
T Consensus 99 ~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 178 (530)
T 2zbk_B 99 YVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 178 (530)
T ss_dssp CCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEEC
T ss_pred cccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEecc
Confidence 75445678899999999999998744349999987555447788888887767677666555432346899999999988
Q ss_pred CcchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHHHhcCCc-c
Q 008575 261 NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG-T 339 (561)
Q Consensus 261 n~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~~~t~~~-t 339 (561)
+|......+.++++++|+.||+++|+|. ++++. .+.|+|.++.||.+|++++|||+|++++.+++|+..+... +
T Consensus 179 ~~~e~~~~i~~~l~~~Al~~p~v~~~l~----~~~~~-~~~~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~~~~~~~~~~~ 253 (530)
T 2zbk_B 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGN-VTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYT 253 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCEEEE----CTTSC-EEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHHTTCSSCCB
T ss_pred chhhHHHHHHHHHHHHHHHCCCcEEEEE----ECCCe-EEEecCccccccCCcceeccCCCChhHHHHHHHHhccCCCce
Confidence 8876667899999999999999999998 66555 4899999999999999999999999999999999999988 9
Q ss_pred hHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCC-ccCCCCCCcCccchHHHHhhhhhhcC
Q 008575 340 LLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELH 418 (561)
Q Consensus 340 l~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~-~~~P~~~~LsPiGe~~l~~gl~k~~~ 418 (561)
|.+||.++|+++|.++|++|++. .+|+++++|++|+++|+.+|++||++++ |++||++|||||||++|++||+|+|+
T Consensus 254 l~~fl~~~ft~~g~~~a~~~~~~--~gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~~~~lspig~~~~~~g~~~~~~ 331 (530)
T 2zbk_B 254 IKEFLVNEFQSIGDTTADKILEL--AGLKPNKKVKNLTEEEITRLVETFKKDEDFRSPSADSLSVIGEDLIELGLKKIFN 331 (530)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH--TTCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCCSTTCCCCCTTHHHHHTTTTTC
T ss_pred eHhhhcCccccccHHHHHHHHHh--hCCCCCCCcccCCHHHHHHHHHHHHhccCCCCCCccccCcCCHHHHHhhHHhhcC
Confidence 99999999999999999999998 4799999999999999999999999999 99999999999999999999999999
Q ss_pred CceEEEEecCcceecCCcEEEEEEeeecCccC-CCCceEEEeeccccccccCCCchhhhhhhcccCccccccCCCCCceE
Q 008575 419 PDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV-KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIG 497 (561)
Q Consensus 419 pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~-~~~~~i~RfANriPLlf~~g~~~it~~~~~~i~W~~Y~i~~~~~~~~ 497 (561)
|||++++||+|+||+||||||||||||||+++ .++++|||||||||||||+||||+|+ +|++|||++|||+++.+|++
T Consensus 332 ~~f~~~~~r~~~~~~g~pf~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~~~~~~~-~~~~~~w~~y~~~~~~~~~~ 410 (530)
T 2zbk_B 332 PDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMV 410 (530)
T ss_dssp CSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGGGCHHHH-HHHHSCTTSSSCCCSSBCEE
T ss_pred ceEEEEEccCCceecCCCEEEEEEeeccCCCCCCCCceEEEEecCCceeecCCcchhhh-hhccCChhhcCcCCCCCCEE
Confidence 99999999999999999999999999999986 55899999999999999999999999 99999999999999999999
Q ss_pred EEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008575 498 VFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561 (561)
Q Consensus 498 v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~~~r~~~~~~ 561 (561)
||||||||||||||+|||+|| |+|||++||++|||+|||+|+.||+||++++++++|+++|+|
T Consensus 411 ~~v~i~st~vp~~~~~Ke~i~-~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~ 473 (530)
T 2zbk_B 411 VMVHLCSTKIPYKSAGKESIA-EVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLK 473 (530)
T ss_dssp EEEEEEESSCCBSSSSCSCBC-CCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCcCCCCccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 799999999999999999999999999999999999998864
No 3
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=1.3e-100 Score=849.55 Aligned_cols=465 Identities=31% Similarity=0.545 Sum_probs=403.2
Q ss_pred cccccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEeccccccccccccccccccc
Q 008575 19 NESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDT 98 (561)
Q Consensus 19 ~~~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~ 98 (561)
-...++++++.++|.++..+.||+.+...|+++|+|||+||+||+...+..|.|.|++....
T Consensus 9 L~e~~k~isi~~~~~~~~~~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~------------------ 70 (621)
T 2q2e_B 9 LAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTG------------------ 70 (621)
T ss_dssp --CCCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET------------------
T ss_pred HHHHhhcCceEEEecCCCceeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC------------------
Confidence 34578899999999999999999998999999999999999999988787888999887651
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccc
Q 008575 99 KLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSG 178 (561)
Q Consensus 99 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~t 178 (561)
.+.+.|+|+|||+||++++++.+|.+|++|
T Consensus 71 --------------------------------------------------~~~~~I~V~DnG~GIp~e~l~~iF~~~~at 100 (621)
T 2q2e_B 71 --------------------------------------------------PDYVTVIIEDNGPGIVREQIPKVFAKLLYG 100 (621)
T ss_dssp --------------------------------------------------TTEEEEEEECCSCCCCGGGHHHHHSCCCCC
T ss_pred --------------------------------------------------CcEEEEEEEECCCCCCHHHHHHHhhhhccC
Confidence 256899999999999999999999999999
Q ss_pred cccc-cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEE
Q 008575 179 TKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV 257 (561)
Q Consensus 179 SK~~-~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~ 257 (561)
+++. ...+.|++|+||+++..++..+.|..|+|.|+..+....+.|.+.++..+|.|........+ ...++||+|+|.
T Consensus 101 skf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~-~~~~~GT~V~~~ 179 (621)
T 2q2e_B 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD-WFRPHGTQIELE 179 (621)
T ss_dssp --CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC-CSCSSCCCEEEE
T ss_pred CccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc-CCCCCCCEEEEE
Confidence 9973 34677899999999999999886666899998865445677777777666666652221211 345799999999
Q ss_pred ecCCcchh-HHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHHHhcC
Q 008575 258 IEGNWTTY-RSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETS 336 (561)
Q Consensus 258 L~~n~~~~-r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~~~t~ 336 (561)
+..+|... +..+.++|+++|+.||+++|+|. ++... .+.|++..+.++..+.++.|||+|.+.+.+..++..++
T Consensus 180 f~~~~~~~~~~~I~~~L~~lAllnpgv~I~L~----d~~~~-~~~~~gg~~~L~~~~~~i~p~~~G~~~~~~eval~~~~ 254 (621)
T 2q2e_B 180 MRAAYVKGRRQSIYEYLKATAIVNPHARITLI----DPDGN-EEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTE 254 (621)
T ss_dssp CSCCCCCCSSSSSHHHHHHHHHHCCSCEEEEC----CTTSC-CEEEECCCCCCCCCCCCCCCCSTTCCHHHHHHHHHHCC
T ss_pred ecCccchHHHHHHHHHHHHHHhhCCCCEEEEE----ECCce-EEEeCCcccchhcccccccCCceeeccCeEEEEEeeCC
Confidence 87777543 35699999999999999999997 55444 48999987889988888999999998877777777777
Q ss_pred CcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCccCCCCCCcCccchHHHHhhhhhh
Q 008575 337 KGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKE 416 (561)
Q Consensus 337 ~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~~P~~~~LsPiGe~~l~~gl~k~ 416 (561)
..++.+|+.+.|++.|..++.++++. .++..++.+..|+.+++...+.+|.+++++.|+++|||||||++|++||+++
T Consensus 255 ~~~i~sFvN~i~T~~GGr~in~~~~~--~~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk~l~pige~~i~~~l~~~ 332 (621)
T 2q2e_B 255 RQKLAPFLRYSFCKIGLLTAEEICKA--AGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKE 332 (621)
T ss_dssp -----CTTSSSSCC--CHHHHHHHHT--TTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCCCCHHHHHHHHHHH
T ss_pred CeEEEEEeCCcccCCCHHHHHHHHHH--hCccccccCCCCCHHHHHhhcEEEEEEECCCCCccccChhHHHHHHHHHHHh
Confidence 78999999999999999999999998 4577665778999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCcceecCCcEEEEEEeeecCccCCC-CceEEEeeccccccccCCCchhhhhhhcccCccccccCCCC--
Q 008575 417 LHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQ-GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ-- 493 (561)
Q Consensus 417 ~~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~~~-~~~i~RfANriPLlf~~g~~~it~~~~~~i~W~~Y~i~~~~-- 493 (561)
|+|||++++||+|+||+||||||||||||||+++++ +++|||||||||||||+||||+|+ ||++|||++|||+|++
T Consensus 333 ~~p~f~~~~~r~p~~~~g~pfivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~~~~t~-~~~~~~w~~y~~~~~~~~ 411 (621)
T 2q2e_B 333 TTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTH-AVEDIKWKQYGLNQPGGG 411 (621)
T ss_dssp SCCSEEECCBCCCEEETTEEEEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTTCHHHH-HHHHSCCTTTTCCCCSSS
T ss_pred cChheEEEEecCccccCCCCeEEEEeeecCCCCCCCCceeEEEEccCCceeecCCccHHHH-HHHhCChhhcCcCCCCCC
Confidence 999999999999999999999999999999999866 599999999999999999999999 9999999999999764
Q ss_pred ---CceEEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008575 494 ---DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561 (561)
Q Consensus 494 ---~~~~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~~~r~~~~~~ 561 (561)
+|++||||||||||||||+|||||| |+|||++|||+|||+|||+|+.||+||++++++++|+++|+|
T Consensus 412 ~p~~~~~~~v~~~st~vp~~~~~ke~ia-~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~ 481 (621)
T 2q2e_B 412 IPVGPVILLIHVASINVPFTSESKDAIA-DIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITK 481 (621)
T ss_dssp SCCSSCCEEEEEECSSCCBSSSSSSSBC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSS
T ss_pred CCCCCEEEEEEEeecCCCcCCcchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999 799999999999999999999999999999999999999875
No 4
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.87 E-value=1.6e-20 Score=198.70 Aligned_cols=343 Identities=19% Similarity=0.209 Sum_probs=218.6
Q ss_pred ccccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccc
Q 008575 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTK 99 (561)
Q Consensus 20 ~~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~ 99 (561)
++..+.++-.|++.++..+...+++...|+++|+|+|+||+|+|-. +....|.|++..
T Consensus 5 ~~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~-~~~~~I~V~i~~--------------------- 62 (390)
T 1kij_A 5 ASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALA-GYATEILVRLNE--------------------- 62 (390)
T ss_dssp --CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHT-TSCCEEEEEECT---------------------
T ss_pred HHHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhh-CCCCEEEEEEEc---------------------
Confidence 5578889999999999999988998899999999999999999954 455678888732
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhh--------h
Q 008575 100 LYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPN--------M 171 (561)
Q Consensus 100 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~--------i 171 (561)
+ ..|+|+|||+|||.+++++ +
T Consensus 63 --------------------------------------------------~-~~i~V~DnG~GIp~~~~~~~~~~~~e~i 91 (390)
T 1kij_A 63 --------------------------------------------------D-GSLTVEDNGRGIPVDLMPEEGKPAVEVI 91 (390)
T ss_dssp --------------------------------------------------T-SCEEEEECSSCCCCSEETTTTEEHHHHH
T ss_pred --------------------------------------------------C-CEEEEEEcCCCCCHHHhhhccccchhhh
Confidence 1 2799999999999999988 9
Q ss_pred hcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCC-
Q 008575 172 FGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKD- 247 (561)
Q Consensus 172 F~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~- 247 (561)
|.++++++|+. .+.+.|++|+||+++..++. .++|+|+..+ ..|. +.+. .+.+.- .........
T Consensus 92 f~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~-----~~~v~t~~~g--~~~~--~~~~--~G~~~~-~~~~~~~~~~ 159 (390)
T 1kij_A 92 YNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSE-----WTVVEVFREG--KHHR--IAFS--RGEVTE-PLRVVGEAPR 159 (390)
T ss_dssp HHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEE-----EEEEEEEETT--EEEE--EEEE--TTEEEE-EEEEEEECGG
T ss_pred eeeeeecccccCccccccCCCCCcceeeeccccc-----ceEEEEecCC--cEEE--EEEc--CCcccc-cceeeccccC
Confidence 99999999983 23466889999999998874 4788888654 3343 3333 333321 111111111
Q ss_pred CCCCcEEEEEecC----CcchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccc
Q 008575 248 RWHGAEIQVVIEG----NWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSV 323 (561)
Q Consensus 248 ~~~GT~V~V~L~~----n~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gv 323 (561)
.++||+|++.... +.......|.++|+++|+.||+++|+|. +..... ++.-..|-|
T Consensus 160 ~~~GT~V~f~Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~----d~~~~~---------------~~~f~~~~G- 219 (390)
T 1kij_A 160 GKTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQ----DRQHGK---------------EEVFLDKGG- 219 (390)
T ss_dssp GCCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEE----EGGGTE---------------EEEECCTTH-
T ss_pred CCCCcEEEEEEChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEE----eCCCcc---------------eEEEEcCCc-
Confidence 5799999998332 2222346799999999999999999997 332110 112222221
Q ss_pred cHHHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCccCCCCCCcCc
Q 008575 324 DLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSP 403 (561)
Q Consensus 324 dl~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~~P~~~~LsP 403 (561)
|.+|+. .+... ..+ + .|+ |
T Consensus 220 ----------------l~~~v~------------~l~~~--------~~~-------------------~-~~~-----~ 238 (390)
T 1kij_A 220 ----------------VASFAK------------ALAEG--------EDL-------------------L-YEK-----P 238 (390)
T ss_dssp ----------------HHHHHH------------HHTTT--------SCB-------------------S-CSS-----C
T ss_pred ----------------HHHHHH------------HHhCC--------CCc-------------------C-CCC-----c
Confidence 233331 01000 000 0 000 0
Q ss_pred cchHHHHhhhhhhcCCceEEEEecCcceecCCcEEEEEEeeecCccCCCCceEEEeeccccccccCC------Cchhhhh
Q 008575 404 AGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQG------GDVVTRT 477 (561)
Q Consensus 404 iGe~~l~~gl~k~~~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~~~~~~i~RfANriPLlf~~g------~~~it~~ 477 (561)
-++.. ..+.+-||+++.|. ..-.-+++=|+|-||. -+.| -.++|+
T Consensus 239 ----------------i~~~~--------~~~~i~ve~a~~~~---~~~~~~~~sFvN~i~t-~~GGTH~~g~~~alt~- 289 (390)
T 1kij_A 239 ----------------FLIRG--------THGEVEVEVGFLHT---QGYNAEILTYANMIPT-RDGGTHLTAFKSAYSR- 289 (390)
T ss_dssp ----------------EEEEE--------EETTEEEEEEEEEB---SSSCCEEEEEETTEEC-TTCBHHHHHHHHHHHH-
T ss_pred ----------------EEEEe--------ecCCeEEEEEEEec---CCCCceEEEEEcCeee-CCCCchhHHHHHHHHH-
Confidence 00000 00237799999993 1113479999999999 5555 256777
Q ss_pred hhcc-cC---c-cccc--cCCC--CCceEEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHH-----------HHH
Q 008575 478 AMKR-IN---W-SSYK--INQT--QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQ-----------CCI 537 (561)
Q Consensus 478 ~~~~-i~---W-~~Y~--i~~~--~~~~~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~-----------~~r 537 (561)
++.. +. . +.-+ |... ..-+..+||+--.+-.|.|-.|+.++ .+|+..-|..++.+ .|+
T Consensus 290 ~i~~~~~~~~l~k~~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~--~~e~~~~v~~~v~~~l~~~l~~np~~a~ 367 (390)
T 1kij_A 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLL--NPEAGTAVGQVVYERLLEILEENPRIAK 367 (390)
T ss_dssp HHHHHHHHTTCCCSSSCCCCTTTTTTTEEEEEEEECSSCCBCSTTCCSBC--CHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhCccccccCCcCHHHHhhhcEEEEEeecCCCccccccccccc--CHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 4432 11 1 1111 2211 13578889998888899999999999 47766555444332 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008575 538 QLKSKIVRKIQDREQQERKRNL 559 (561)
Q Consensus 538 ~L~~~l~r~~~~~~~~~r~~~~ 559 (561)
.+-.++....+++++.+|.+-+
T Consensus 368 ~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 368 AVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 5555555566667766665543
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.83 E-value=2.3e-18 Score=182.34 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=135.6
Q ss_pred cccccccCCHHHHHHhccccc-CccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccc
Q 008575 19 NESALKQKSPAEFFAENKNIA-GFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVD 97 (561)
Q Consensus 19 ~~~~~~~~S~aEff~~nk~i~-Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d 97 (561)
.++..+.++..|...+...+. |...+ +.+|.|+||||+|+|. .|....|.|+|...
T Consensus 6 ~~~~i~~L~gle~vr~RPgmYiGs~~~----~~lv~ElvdNsiD~a~-~g~a~~I~V~i~~~------------------ 62 (390)
T 1s16_A 6 NADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEAL-AGHAKRVDVILHAD------------------ 62 (390)
T ss_dssp SGGGCEECCTTHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHH-TTCCSEEEEEECTT------------------
T ss_pred CHHHcEEcchhHHHhhCCceeecCCcH----HHHHHHHHHHHHHHHh-cCCCCEEEEEEecC------------------
Confidence 466788999999999999976 76665 8999999999999997 46667899988431
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCC--------hh
Q 008575 98 TKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDD--------IP 169 (561)
Q Consensus 98 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~--------l~ 169 (561)
+ .|+|+|||+|||.++ ++
T Consensus 63 ----------------------------------------------------g--~I~V~DnG~GIp~~~~~~~~~~~~e 88 (390)
T 1s16_A 63 ----------------------------------------------------Q--SLEVIDDGRGMPVDIHPEEGVPAVE 88 (390)
T ss_dssp ----------------------------------------------------S--CEEEEECSSCCCCSBCTTTCSBHHH
T ss_pred ----------------------------------------------------C--EEEEEECCCCcCcccccccCcchhh
Confidence 1 799999999999999 67
Q ss_pred hhhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCC
Q 008575 170 NMFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK 246 (561)
Q Consensus 170 ~iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~ 246 (561)
.+|.++++||||. .+.+.|.+|+|++++..+|. .++|+|+..+ ..| .+.+. .+.+.- ........
T Consensus 89 ~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~-----~l~v~~~r~g--~~~--~~~~~--~G~~~~-~~~~~g~~ 156 (390)
T 1s16_A 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK-----RVEVNVRRDG--QVY--NIAFE--NGEKVQ-DLQVVGTC 156 (390)
T ss_dssp HHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE-----EEEEEEEETT--EEE--EEEEE--TTEEEE-EEEEEEEC
T ss_pred heeeeecccCCcCCCcccccCCccccchHHHHHhhc-----ccEEEEEECC--cEE--EEEEe--CCcccc-cceecccc
Confidence 7899988999984 34577889999999998874 4788888744 334 44443 343321 11111111
Q ss_pred C-CCCCcEEEEEecC----CcchhHHHHHHHHHHHHhhCCCcEEEEE
Q 008575 247 D-RWHGAEIQVVIEG----NWTTYRSKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 247 ~-~~~GT~V~V~L~~----n~~~~r~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
. .++||+|++.... +.......|.++|+++|+.||+++|+|.
T Consensus 157 ~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp CTTCCEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cCCCCceEEEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 2689999998332 2222346799999999999999999997
No 6
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.83 E-value=3.5e-18 Score=180.97 Aligned_cols=343 Identities=18% Similarity=0.263 Sum_probs=218.9
Q ss_pred CcccccccCCHHHHHHhccccc-CccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEeccccccccccccccccc
Q 008575 18 PNESALKQKSPAEFFAENKNIA-GFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERV 96 (561)
Q Consensus 18 ~~~~~~~~~S~aEff~~nk~i~-Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~ 96 (561)
=.++..+.++-.|...+...+. |-..+...|+.+|.|+||||+|+|.. |....|.|+|...
T Consensus 4 y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~-g~a~~I~V~i~~~----------------- 65 (391)
T 1ei1_A 4 SDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALA-GHCKEIIVTIHAD----------------- 65 (391)
T ss_dssp CSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEECTT-----------------
T ss_pred CCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhc-CCCCEEEEEEeCC-----------------
Confidence 3466788999999999999976 66665459999999999999999965 6567899988431
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCCh--------
Q 008575 97 DTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDI-------- 168 (561)
Q Consensus 97 d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l-------- 168 (561)
..|+|+|||+|||.++.
T Consensus 66 -------------------------------------------------------g~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 66 -------------------------------------------------------NSVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp -------------------------------------------------------SCEEEEECSSCCCCSBCTTTSSBHH
T ss_pred -------------------------------------------------------CEEEEEECCCCcccCcccccCcchH
Confidence 27999999999999984
Q ss_pred hhhhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccC
Q 008575 169 PNMFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245 (561)
Q Consensus 169 ~~iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~ 245 (561)
+.+|.++++||||. .+.+.|.+|+|++++..+|. .++|+++..+ ..| .+.+. .+.+. .+.....
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~-----~l~v~~~r~g--~~~--~~~~~--~G~~~--~~l~~~~ 157 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ-----KLELVIQREG--KIH--RQIYE--HGVPQ--APLAVTG 157 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE-----EEEEEEEETT--EEE--EEEEE--TTEES--SCCEEEE
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHHHHhcC-----eEEEEEEeCC--cEE--EEEEc--CCccc--ccceecc
Confidence 45899888999984 34578899999999998874 4778888754 344 34443 23221 1100000
Q ss_pred CCCCCCcEEEEEecC----C-cchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCC
Q 008575 246 KDRWHGAEIQVVIEG----N-WTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHP 320 (561)
Q Consensus 246 ~~~~~GT~V~V~L~~----n-~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP 320 (561)
+..++||+|++.... . .......|.++|+++|+.||+++|+|. +... + .++.-..|
T Consensus 158 ~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~----d~~~-------------~--~~~~f~~~ 218 (391)
T 1ei1_A 158 ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR----DKRD-------------G--KEDHFHYE 218 (391)
T ss_dssp ECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE----ETTT-------------C--CEEEECCC
T ss_pred CcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE----cCCC-------------c--ceEEEEcC
Confidence 124799999998332 2 222346799999999999999999997 2211 0 11122222
Q ss_pred ccccHHHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCccCCCCCC
Q 008575 321 SSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGC 400 (561)
Q Consensus 321 ~Gvdl~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~~P~~~~ 400 (561)
-| |.+|+. .+... ..| +
T Consensus 219 gG-----------------l~~~v~------------~l~~~--------~~~-------------------~------- 235 (391)
T 1ei1_A 219 GG-----------------IKAFVE------------YLNKN--------KTP-------------------I------- 235 (391)
T ss_dssp SH-----------------HHHHHH------------HHHHT--------SCB-------------------S-------
T ss_pred ch-----------------HHHHHH------------HHcCC--------Ccc-------------------c-------
Confidence 21 223331 01110 000 0
Q ss_pred cCccchHHHHhhhhhhcCCceEE-EEecCcceecCCcEEEEEEeeecCccCCCCceEEEeeccccccccCCC------ch
Q 008575 401 LSPAGEYNLRLGIIKELHPDMVA-TYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG------DV 473 (561)
Q Consensus 401 LsPiGe~~l~~gl~k~~~pefv~-~~tr~p~~y~G~PfiVEa~iayGg~~~~~~~~i~RfANriPLlf~~g~------~~ 473 (561)
.|+.+. ...+ .-+-||+|++|-- .-.-+++=|+|-||. -+.|. .+
T Consensus 236 -----------------~~~~i~~~~~~-------~~i~veva~~~~~---~~~e~~~sFvN~i~t-~~GGTH~~gfr~a 287 (391)
T 1ei1_A 236 -----------------HPNIFYFSTEK-------DGIGVEVALQWND---GFQENIYCFTNNIPQ-RDGGTHLAGFRAA 287 (391)
T ss_dssp -----------------SSCCEEEEEEE-------TTEEEEEEEEEBS---SCCEEEEEEETTEEC-TTCBHHHHHHHHH
T ss_pred -----------------ccccEEEEEec-------CCEEEEEEEEccC---CCCeeEEEEEcceec-CCCCcHHHHHHHH
Confidence 001000 0001 1377999999951 112368999999999 56554 35
Q ss_pred hhhhhhccc----Cc-cccccCCC----CCceEEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHH----------
Q 008575 474 VTRTAMKRI----NW-SSYKINQT----QDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQ---------- 534 (561)
Q Consensus 474 it~~~~~~i----~W-~~Y~i~~~----~~~~~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~---------- 534 (561)
+|+ ++... +. +..+++.. ..-+..+||+--++-.|.|-.|+.+. .+|+..-|..++.+
T Consensus 288 lt~-~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvki~~P~FegQTK~kL~--~~e~~~~v~~~v~~~l~~~l~~np 364 (391)
T 1ei1_A 288 MTR-TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV--SSEVKSAVEQQMNELLAEYLLENP 364 (391)
T ss_dssp HHH-HHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEECSSCCBSSTTCCSBC--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHH-HHHHHHHHhCcccccCCccCHHHHhhccEEEEEEecCCCCcCCccccccc--CHHHHHHHHHHHHHHHHHHHHHCH
Confidence 677 44321 11 11222221 13588999999999999999999999 47776666554432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhh
Q 008575 535 -CCIQLKSKIVRKIQDREQQERKRNL 559 (561)
Q Consensus 535 -~~r~L~~~l~r~~~~~~~~~r~~~~ 559 (561)
.|+.+-.++....+++++.+|.+-+
T Consensus 365 ~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 365 TDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445555555566667766665543
No 7
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=178.91 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCCCcCChhhhhccccccccccc------ccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL------KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCK 225 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~------~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~ 225 (561)
..|+|+|||+||++++++.+|.+|+ |||+.. ..+.|++|.||+.+..+| .++|+|++.++..+|.+.
T Consensus 58 ~~I~V~DnG~GI~~~~l~~~~~~~~-tsK~~~~~dl~~i~s~GfrGeaL~Si~avs------~l~v~sr~~~~~~~~~~~ 130 (348)
T 3na3_A 58 KLIQIQDNGTGIRKEDLDIVCERFT-TSKLQSFEDLASISTYGFRGEALASISHVA------HVTITTKTADGKCAYRAS 130 (348)
T ss_dssp SEEEEEECSCCCCGGGGGTTTSTTC-CSSCCCC---------CCTTCHHHHHHHSS------EEEEEEECTTCSSEEEEE
T ss_pred EEEEEEECCcCcChHHhhhhhcccc-ccccCcchhhhccccCCcCChHHHHhhccc------EEEEEEEECCCCceEEEE
Confidence 5799999999999999999999885 889732 246788888887776554 589999998876666554
Q ss_pred EEeeccCCCceeee-eccccCCCCCCCcEEEEE-ecCCcchhH----------HHHHHHHHHHHhhCCCcEEEEE
Q 008575 226 LDIDIHRNIPHVHL-HEKRENKDRWHGAEIQVV-IEGNWTTYR----------SKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 226 L~id~~kN~p~Il~-~e~~~~~~~~~GT~V~V~-L~~n~~~~r----------~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
+ + . +.+.. .++ ...++||+|+|+ |+.||+..+ ..|.++|+++|++||+++|+|.
T Consensus 131 ~--~--~--G~~~~~~~~---~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~ 196 (348)
T 3na3_A 131 Y--S--D--GKLKAPPKP---CAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVK 196 (348)
T ss_dssp E--E--T--TEESSCCEE---ECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred E--e--C--CEEeeeeeE---ecCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 4 3 2 23322 122 245799999999 788875322 3699999999999999999998
No 8
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.75 E-value=1.3e-17 Score=172.94 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=89.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhccccccccccc------ccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL------KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCK 225 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~------~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~ 225 (561)
..|+|.|||+||++++++.+|++| ++||+.. ..+.|++|+||+++..++ .++|.|+..+...+|.
T Consensus 54 ~~i~V~DnG~Gi~~~~l~~~~~~~-~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs------~l~v~s~~~~~~~~~~-- 124 (333)
T 1b63_A 54 KLIRIRDNGCGIKKDELALALARH-ATSKIASLDDLEAIISLGFRGEALASISSVS------RLTLTSRTAEQQEAWQ-- 124 (333)
T ss_dssp SEEEEEECSCCCCGGGHHHHHSTT-CCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS------EEEEEEECTTCSSEEE--
T ss_pred eEEEEEEcCCCcCHHHHHHhhhcc-cccCccccchhhhccccCccccchhhhhcCC------cEEEEEecCCCceEEE--
Confidence 579999999999999999999998 4788731 146788999988775543 5899999877654554
Q ss_pred EEeeccCCCceeeeeccccCCCCCCCcEEEEE-ecCCcchhH----------HHHHHHHHHHHhhCCCcEEEEE
Q 008575 226 LDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV-IEGNWTTYR----------SKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 226 L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~-L~~n~~~~r----------~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
+..+.. +......+. ..++||+|+|. |+.+++..+ ..|.++++++|+.||+++|++.
T Consensus 125 ~~~~g~---~~~~~~~~~---~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~ 192 (333)
T 1b63_A 125 AYAEGR---DMNVTVKPA---AHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLS 192 (333)
T ss_dssp EEEETT---TTEEEEEEE---CCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCC---cceEeeecc---cCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 334421 212222222 45799999999 666664221 4689999999999999999997
No 9
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.74 E-value=1.2e-17 Score=177.33 Aligned_cols=188 Identities=18% Similarity=0.221 Sum_probs=140.0
Q ss_pred ccccccCCHHHHHHhccccc-CccCC---------------------CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEE
Q 008575 20 ESALKQKSPAEFFAENKNIA-GFDNP---------------------GKSLYTTVRELVENSLDSAESISELPVVEITIE 77 (561)
Q Consensus 20 ~~~~~~~S~aEff~~nk~i~-Gfdn~---------------------~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~ 77 (561)
++.++.++..|.+.+...+. |..++ ...|+.+|.|+||||+|++...|....|.|+|.
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 35688899999999999976 87775 479999999999999999977777889999985
Q ss_pred EecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEE
Q 008575 78 EIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCK 157 (561)
Q Consensus 78 ~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~ 157 (561)
.. + ..|+|+
T Consensus 83 ~~----------------------------------------------------------------------~-~~I~V~ 91 (400)
T 1zxm_A 83 PE----------------------------------------------------------------------N-NLISIW 91 (400)
T ss_dssp TT----------------------------------------------------------------------T-TEEEEE
T ss_pred CC----------------------------------------------------------------------C-CEEEEE
Confidence 42 1 479999
Q ss_pred eCCCCCCcCC--------hhhhhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEE
Q 008575 158 DNGKGMPHDD--------IPNMFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 158 DNG~GI~~e~--------l~~iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
|||+|||.++ ++.+|...++||||. ++.+.|.+|+|++++..+|. .++|+++....+..|...
T Consensus 92 DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~-----~l~v~v~~~~~g~~~~~~- 165 (400)
T 1zxm_A 92 NNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST-----KFTVETASREYKKMFKQT- 165 (400)
T ss_dssp EESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE-----EEEEEEEETTTTEEEEEE-
T ss_pred ECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc-----ceEEEEecCCCCcEEEEE-
Confidence 9999999998 556899888999994 45688999999999998864 477888764444454433
Q ss_pred EeeccCCCceeeeeccccCCCCCCCcEEEEEecCC-c-----chhHHH-HHHHHHHHHhhCCCcEEEEE
Q 008575 227 DIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGN-W-----TTYRSK-ILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 227 ~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n-~-----~~~r~~-I~eyLrr~AIvnP~a~~~l~ 288 (561)
+. .+.+.. ..........++||+|++..... | ...... |.++++++|+.||+++|+|.
T Consensus 166 -~~--~G~~~~-~~~~ig~~~~~~GT~V~F~Pd~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 166 -WM--DNMGRA-GEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp -EE--TTTTEE-CCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred -Ec--cCcccc-CcceeccCCCCCccEEEEEEChHHhCceeecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 33 343322 11111112346899999984432 2 111222 88999999999999999986
No 10
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.73 E-value=2.5e-17 Score=162.21 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=125.4
Q ss_pred cccccccCCHHHHHHhccccc-CccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccc
Q 008575 19 NESALKQKSPAEFFAENKNIA-GFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVD 97 (561)
Q Consensus 19 ~~~~~~~~S~aEff~~nk~i~-Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d 97 (561)
.++..+.++-.|.+.++..+. |..+++..|+.+|+|+|+||+|+|-. |....|.|+|...
T Consensus 6 ~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~-g~~~~I~V~i~~~------------------ 66 (220)
T 4duh_A 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALA-GHCKEIIVTIHAD------------------ 66 (220)
T ss_dssp ---------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHH-SCCCEEEEEECTT------------------
T ss_pred ChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhc-CCCCEEEEEEeCC------------------
Confidence 455778888999999999975 98888789999999999999999975 5567898887321
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCCh--------h
Q 008575 98 TKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDI--------P 169 (561)
Q Consensus 98 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l--------~ 169 (561)
..|+|+|||+|||.+.. +
T Consensus 67 ------------------------------------------------------g~i~V~DnGrGIp~~~~~~~~~~~~e 92 (220)
T 4duh_A 67 ------------------------------------------------------NSVSVQDDGRGIPTGIHPEEGVSAAE 92 (220)
T ss_dssp ------------------------------------------------------SCEEEEECSSCCCCSEETTTTEEHHH
T ss_pred ------------------------------------------------------CcEEEEECCcCcccccccccCcchhh
Confidence 26999999999999985 4
Q ss_pred hhhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCC
Q 008575 170 NMFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK 246 (561)
Q Consensus 170 ~iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~ 246 (561)
.+|...++|+||. .+.+.|.+|+|++++..+|. .++|+++..|. .| .+.+. .+.+.- ...... .
T Consensus 93 ~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~-----~l~v~v~r~g~--~~--~~~f~--~G~~~~-~l~~~g-~ 159 (220)
T 4duh_A 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ-----KLELVIQREGK--IH--RQIYE--HGVPQA-PLAVTG-E 159 (220)
T ss_dssp HHHHSTTCSSCCCTTC--------CCCHHHHHHTEE-----EEEEEEEETTE--EE--EEEEE--TTEESS-SCEEEE-E
T ss_pred heeeecccCCCcCCCccccccCccceecchhccccc-----ceEEEEEECCE--EE--EEEec--CCcCcC-Cceecc-c
Confidence 5788888999993 34678899999999998874 47888887553 34 33333 343321 111111 1
Q ss_pred CCCCCcEEEEEecCC-cc----hhHHHHHHHHHHHHhhCCCcEEEEE
Q 008575 247 DRWHGAEIQVVIEGN-WT----TYRSKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 247 ~~~~GT~V~V~L~~n-~~----~~r~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
...+||+|++..... |. .....+.+.|+++|+.||.++|.|.
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~ 206 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLR 206 (220)
T ss_dssp CSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 356899999984322 21 2235689999999999999999997
No 11
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-17 Score=173.65 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred eeEEEEEeCCCCCCcCChhhhhccccccccccc-c-----cCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEE
Q 008575 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL-K-----QTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFC 224 (561)
Q Consensus 151 ~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~-~-----~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~ 224 (561)
...|+|+|||+||++++++.+|.+|+ |||+.. . .+.|++|.||+.+..+ . .++|+|++.+ ..+|.+
T Consensus 54 ~~~i~V~DnG~Gi~~~~l~~~~~~~~-tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S-~l~V~sr~~~-~~~~~~ 125 (367)
T 3h4l_A 54 LESIECSDNGDGIDPSNYEFLALKHY-TSKIAKFQDVAKVQTLGFRGEALSSLCGI-----A-KLSVITTTSP-PKADKL 125 (367)
T ss_dssp TSEEEEEECSCCCCGGGTTTTTCCEE-C---------CCCCEEEETTHHHHHHHHS-----S-EEEEEEESST-TCEEEE
T ss_pred EEEEEEEECCCCcChhHhccceeccc-cCcCCchhhhhhhhccCccchHHHHhhcc-----C-EEEEEEEECC-CCEEEE
Confidence 46899999999999999999999885 888732 1 2234445554444333 3 6999999876 455554
Q ss_pred EEEeeccCCCceeeeeccccCCCCCCCcEEEEE-ecCCcchhH-----------HHHHHHHHHHHhhCCCcEEEEE
Q 008575 225 KLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV-IEGNWTTYR-----------SKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 225 ~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~-L~~n~~~~r-----------~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
. ++. .+.+....+. ..++||+|+|+ |+.||+..+ ..|.+.|+++|++||+++|+|.
T Consensus 126 ~--~~~---~G~~~~~~~~---~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~ 193 (367)
T 3h4l_A 126 E--YDM---VGHITSKTTT---SRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVW 193 (367)
T ss_dssp E--ECT---TCCEEEEEEE---CCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred E--EcC---CCcEEeeccc---cCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 4 431 2344443332 55799999999 788875322 3589999999999999999997
No 12
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.72 E-value=2.3e-17 Score=173.22 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhccccccccccc------ccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL------KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCK 225 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~------~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~ 225 (561)
..|+|.|||+||++++++.+|++|+ +||... ..+.|++|+||+.+..++ .++|.|+..+...+|.+.
T Consensus 64 ~~I~V~DnG~Gi~~~~l~~~f~~~~-tsK~~~~~dl~~i~s~G~rG~gl~si~~vs------~v~v~t~~~~~~~~~~~~ 136 (365)
T 1h7s_A 64 DLIEVSDNGCGVEEENFEGLTLKHH-TSKIQEFADLTQVETFGFRGEALSSLCALS------DVTISTCHASAKVGTRLM 136 (365)
T ss_dssp SEEEEEECSCCCCGGGSGGGGC-----------CCTTCSEEESSSSSHHHHHHHHS------EEEEEEECTTCSSCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHhhhcc-ccccccccchhcccccCCCCchhhhhhhhc------cEEEEEccCCCcceEEEE
Confidence 5899999999999999999999985 778632 124577899988776654 589999987765555544
Q ss_pred EEeeccCCCceeeeeccccCCCCCCCcEEEEE-ecCCcchhH-----------HHHHHHHHHHHhhCCCcEEEEE
Q 008575 226 LDIDIHRNIPHVHLHEKRENKDRWHGAEIQVV-IEGNWTTYR-----------SKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 226 L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~-L~~n~~~~r-----------~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
++. .+.+...++ ....+||+|+|+ |+.+++..+ ..|.++++++|+.||+++|+|.
T Consensus 137 --~~~---~G~~~~~~~---~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~ 203 (365)
T 1h7s_A 137 --FDH---NGKIIQKTP---YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCT 203 (365)
T ss_dssp --ECT---TSCEEEEEE---CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --EcC---CCceEeecc---cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEE
Confidence 432 123333322 245799999999 777765321 3588999999999999999997
No 13
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.70 E-value=7.6e-17 Score=159.38 Aligned_cols=186 Identities=19% Similarity=0.259 Sum_probs=127.0
Q ss_pred CcccccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccc
Q 008575 18 PNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVD 97 (561)
Q Consensus 18 ~~~~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d 97 (561)
=.++.++.++..|.+.++..+...+.....|+.+++|+|+||+|+|.. |....|.|+|...
T Consensus 11 y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~-g~~~~I~V~i~~~------------------ 71 (226)
T 4emv_A 11 YNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALS-GFGDRIDVTINKD------------------ 71 (226)
T ss_dssp ------CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEECTT------------------
T ss_pred CChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhc-CCCcEEEEEEeCC------------------
Confidence 456678899999999999998866777789999999999999999965 5667888887321
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCC-------hhh
Q 008575 98 TKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDD-------IPN 170 (561)
Q Consensus 98 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~-------l~~ 170 (561)
..|+|+|||+|||.+. ++.
T Consensus 72 ------------------------------------------------------g~i~V~DnG~GIp~~~h~~~~~~~e~ 97 (226)
T 4emv_A 72 ------------------------------------------------------GSLTVQDHGRGMPTGMHAMGIPTVEV 97 (226)
T ss_dssp ------------------------------------------------------SCEEEEECSSCCCCSBCGGGCBHHHH
T ss_pred ------------------------------------------------------CeEEEEEcCCCccccccccCceehhe
Confidence 2699999999999998 777
Q ss_pred hhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCC-Cceeeeeccc-cC
Q 008575 171 MFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRN-IPHVHLHEKR-EN 245 (561)
Q Consensus 171 iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN-~p~Il~~e~~-~~ 245 (561)
+|...++|+||. .+.+.|.+|+|++++..+|. .++|+++..|. .| ...+. .+ .+.- ..... +.
T Consensus 98 v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~-----~l~v~v~r~g~--~~--~q~f~--~Gg~~~~-~l~~ig~~ 165 (226)
T 4emv_A 98 IFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS-----WLEVEITRDGA--VY--KQRFE--NGGKPVT-TLKKIGTA 165 (226)
T ss_dssp HHHCBC--------------CGGGCCHHHHHHTEE-----EEEEEEEETTE--EE--EEEEE--TTTEESS-CSEEEEEC
T ss_pred eEEeecccCccCccceEeccccccccchhhhhccc-----ceEEEEEeCCc--EE--EEEEC--CCCEEcC-CceEeccc
Confidence 899888999993 35678999999999998874 47888887553 34 33333 33 2210 10001 10
Q ss_pred CCCCCCcEEEEEecCC-c---chhHHHHHHHHHHHHhhCCCcEEEEE
Q 008575 246 KDRWHGAEIQVVIEGN-W---TTYRSKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 246 ~~~~~GT~V~V~L~~n-~---~~~r~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
....+||+|++..... | ......+.+.|+++|..||.++|.|.
T Consensus 166 ~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~ 212 (226)
T 4emv_A 166 LKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLT 212 (226)
T ss_dssp CTTCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1256899999984332 2 12335699999999999999999997
No 14
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.69 E-value=2.2e-16 Score=153.32 Aligned_cols=155 Identities=19% Similarity=0.321 Sum_probs=96.3
Q ss_pred HHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 008575 49 YTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNA 128 (561)
Q Consensus 49 ~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 128 (561)
+.+|+|||+||+||+.. |....|.|+|..
T Consensus 19 ~~~v~Elv~NsiDa~~~-g~a~~I~V~i~~-------------------------------------------------- 47 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALA-GHAKRVDVILHA-------------------------------------------------- 47 (201)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSEEEEEECT--------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHhc-CCCcEEEEEEeC--------------------------------------------------
Confidence 89999999999999874 445678888732
Q ss_pred hccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCCh--------hhhhcccccccccc---cccCCCcceeehHhh
Q 008575 129 ALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDI--------PNMFGRVLSGTKYG---LKQTRGKFGLGAKMA 197 (561)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l--------~~iF~r~~~tSK~~---~~~s~G~~GlGL~la 197 (561)
++ .|+|+|||+|||.+++ +.+|...++|||+. .+.+.|++|.||+++
T Consensus 48 --------------------~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssi 105 (201)
T 3fv5_A 48 --------------------DQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 105 (201)
T ss_dssp --------------------TS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHH
T ss_pred --------------------CC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchh
Confidence 11 6999999999999985 35577777899984 235788999999999
Q ss_pred HHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCC-CCCCCcEEEEEecCC-c---chhHHHHHHH
Q 008575 198 LIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK-DRWHGAEIQVVIEGN-W---TTYRSKILHY 272 (561)
Q Consensus 198 ~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~-~~~~GT~V~V~L~~n-~---~~~r~~I~ey 272 (561)
..+|. .++|+|+..+. . |.+.+. .+.+. ......... ....||+|+|..... | ......|.+.
T Consensus 106 nalS~-----~l~v~t~~~g~--~--~~~~~~--~G~~~-~~~~~~g~~~~~~~GT~V~f~Pdr~~F~~~~~e~~~i~~~ 173 (201)
T 3fv5_A 106 NALSK-----RVEVNVRRDGQ--V--YNIAFE--NGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 173 (201)
T ss_dssp HHTEE-----EEEEEEEETTE--E--EEEEEE--TTEEE-EEEEEEEECCTTCCEEEEEEEECGGGSSCCCCCHHHHHHH
T ss_pred hcccc-----eEEEEEEecCc--e--EEEEEe--CCEEc-ccceecccCCCCCCCeEEEEEECHHHcCCCccCHHHHHHH
Confidence 88763 57888887553 3 344443 33332 111111111 146899999983321 2 2234679999
Q ss_pred HHHHHhhCCCcEEEEE
Q 008575 273 MRQMAVITPYAQFLFK 288 (561)
Q Consensus 273 Lrr~AIvnP~a~~~l~ 288 (561)
|+++|+.||.++|+|.
T Consensus 174 l~~lA~l~pgv~~~l~ 189 (201)
T 3fv5_A 174 LKAKAVLCPGVEITFK 189 (201)
T ss_dssp HHHHHHHSTTCEEEEE
T ss_pred HHHHHHhCCCCEEEEE
Confidence 9999999999999997
No 15
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.68 E-value=1.7e-16 Score=166.88 Aligned_cols=315 Identities=13% Similarity=0.150 Sum_probs=199.3
Q ss_pred cCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccch
Q 008575 25 QKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDY 104 (561)
Q Consensus 25 ~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~ 104 (561)
.+|..|.+.+...+...+.+...|+.+|+||||||+|+|.. |....|.|+|++.
T Consensus 8 ~~~~lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~-g~a~~I~V~i~~~------------------------- 61 (369)
T 3cwv_A 8 PGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARR-GECRDVVLEVGGD------------------------- 61 (369)
T ss_dssp -CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEECTT-------------------------
T ss_pred CccHhHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhh-CCCCEEEEEEeCC-------------------------
Confidence 35778999999998877777789999999999999999955 6668899998431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccc
Q 008575 105 ETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLK 184 (561)
Q Consensus 105 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~ 184 (561)
+ .|+|+|||+|||. +.+| ..++|||+...
T Consensus 62 ---------------------------------------------g--~I~V~DnGrGIp~---e~v~-~lhagsKf~~~ 90 (369)
T 3cwv_A 62 ---------------------------------------------G--SIALFCTSRTVTA---ENLV-RVATGAGFLGR 90 (369)
T ss_dssp ---------------------------------------------S--CEEEEEEESSCCH---HHHH-HHHTTTTGGGS
T ss_pred ---------------------------------------------C--EEEEEECCCCcCH---hHee-eeecCCCcCCC
Confidence 1 7999999999999 6678 77799999531
Q ss_pred ---cCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCce----eee-eccccCCCCCCCcEEEE
Q 008575 185 ---QTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPH----VHL-HEKRENKDRWHGAEIQV 256 (561)
Q Consensus 185 ---~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~----Il~-~e~~~~~~~~~GT~V~V 256 (561)
++.+..| |++++..+|. .++|+|+..+. .|. +.+. .+.+. ... ..+.. ...++||+|++
T Consensus 91 ~~~~~y~vsG-Gls~vnalSs-----~l~v~t~r~g~--~~~--~~~~--~G~~~~~~~~~~~l~~~g-~~~~~GT~V~f 157 (369)
T 3cwv_A 91 PPGDGWGWDS-MLVVSLALSS-----RYQVDIWADGR--QWR--VMGE--HGHPQGEGAAVTPMEPMP-VSAERGVRVHF 157 (369)
T ss_dssp SCCCSTTTTS-SHHHHHHTEE-----EEEEEEEETTE--EEE--EEEE--TTEECTTCEEESSCCCCS-SCCSEEEEEEE
T ss_pred cccccccccC-HHHHHHHhhc-----eEEEEEEECCC--EEE--EEEe--CCcccccccccCCceEec-ccCCCCCEEEE
Confidence 3455667 8888887753 57888887543 343 3343 33220 011 11111 12578999999
Q ss_pred EecCC-c---chhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHH
Q 008575 257 VIEGN-W---TTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLI 332 (561)
Q Consensus 257 ~L~~n-~---~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~ 332 (561)
..... | ......|.++|+++|+.||+++|+|. +.... .++.-..|-|
T Consensus 158 ~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~----d~~~~---------------~~~~f~~~gG---------- 208 (369)
T 3cwv_A 158 VPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFA----DLQRG---------------ERTLWHLPGG---------- 208 (369)
T ss_dssp EECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE----ETTTT---------------EEEEEECTTH----------
T ss_pred EECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE----eCCCC---------------eeEEEEeCch----------
Confidence 94332 2 23346799999999999999999997 33210 0122222222
Q ss_pred HhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCccCCCCCCcCccchHHHHhh
Q 008575 333 AETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLG 412 (561)
Q Consensus 333 ~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~~P~~~~LsPiGe~~l~~g 412 (561)
|.+|+. .+... . .| +. |+ |+
T Consensus 209 -------l~~~v~------------~l~~~---~-----~~-------------------~~-~~-----~i-------- 228 (369)
T 3cwv_A 209 -------VAQWAH------------VLTEA---R-----PQ-------------------LH-PE-----PV-------- 228 (369)
T ss_dssp -------HHHHHH------------HHHTT---S-----CB-------------------SS-SS-----CE--------
T ss_pred -------HHHHHH------------HHhcC---C-----cc-------------------cC-CC-----cE--------
Confidence 333331 11110 0 00 00 00 00
Q ss_pred hhhhcCCceEEEEecCcceecCCcEEEEEEeeecCccCCCCceEEEeeccccccccCCC------chhhhhhhcccCccc
Q 008575 413 IIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG------DVVTRTAMKRINWSS 486 (561)
Q Consensus 413 l~k~~~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~~~~~~i~RfANriPLlf~~g~------~~it~~~~~~i~W~~ 486 (561)
++.. .+ .-+-||++++|.- .-.-+++=|+|-||. -+.|. .++|+ ++.+.= +.
T Consensus 229 --------~~~~-~~-------~~i~ve~a~~~~~---~~~~~~~sFVN~i~t-~~GGTH~~g~~~al~~-a~~~~~-k~ 286 (369)
T 3cwv_A 229 --------VFDF-TW-------DGLRVQCALQWCE---DEDSTLLSFANAVRT-VRHGAHVKGVTQALRG-ALAKLS-GE 286 (369)
T ss_dssp --------EEEE-EE-------TTEEEEEEEEEBS---SSCCEEEEEETTEEC-TTCBHHHHHHHHHHHH-HHHHHH-TC
T ss_pred --------EEEE-ec-------CCEEEEEEEEecC---CCCeeEEEEECCEEe-CCCCCHHHHHHHHHHH-HHHHHH-hh
Confidence 0000 11 2377999999952 112378999999998 44332 45676 554332 22
Q ss_pred cccCCC----CCceEEEEEeeeCCCC--CCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008575 487 YKINQT----QDKIGVFVSIVSTKIP--FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545 (561)
Q Consensus 487 Y~i~~~----~~~~~v~vhi~St~vP--f~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r 545 (561)
.+.+.. ..-+..+||+-..+-. |.|-.|+.+. .+|+..-|..+ +..+|..||.+
T Consensus 287 ~~~~l~~~dvregl~avisvk~~~P~~~FegQTK~kL~--~~e~~~~v~~~---v~~~l~~~l~~ 346 (369)
T 3cwv_A 287 TRGAFPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLA--IPGLEEAIRKQ---LQPLFIELLRE 346 (369)
T ss_dssp CGGGSCHHHHTTTEEEEEEEECCGGGCCBSSTTCCSBC--CTTHHHHHHHH---HHHHHHHHHHT
T ss_pred cCCCcCHHHHhhccEEEEEeccCCcchhccccccchhc--CHHHHHHHHHH---HHHHHHHHHHH
Confidence 222222 1357888888777777 9999999999 46665555544 34578888874
No 16
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.67 E-value=7.6e-15 Score=156.14 Aligned_cols=180 Identities=16% Similarity=0.213 Sum_probs=106.8
Q ss_pred ccccccCCHHHHHHhccccc-CccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEeccccccccccccccccccc
Q 008575 20 ESALKQKSPAEFFAENKNIA-GFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDT 98 (561)
Q Consensus 20 ~~~~~~~S~aEff~~nk~i~-Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~ 98 (561)
++..+-++-.|-..+...+. |=.+ .+.+|.|+|+||+|++-. |....|.|+|...
T Consensus 26 a~~I~vL~glE~VRkRPgMYiGst~----~~hlv~EivdNsiDea~a-g~~~~I~V~i~~d------------------- 81 (408)
T 3lnu_A 26 AADIEVLSGLDPVKRRPGMYTDTAR----PNHLAQEVIDNSVDEALA-GHAKQIEVTLYKD------------------- 81 (408)
T ss_dssp --------CCHHHHHCGGGTSCTTS----THHHHHHHHHHHHHHHHT-TSCCEEEEEECTT-------------------
T ss_pred HhHceeccccHHHhcCCccEECCCC----cchhhHHHHHHHHHHhhc-CCCceEEEEEeCC-------------------
Confidence 33445555556666666643 4332 299999999999999854 5567899988321
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCCh--------hh
Q 008575 99 KLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDI--------PN 170 (561)
Q Consensus 99 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l--------~~ 170 (561)
-.|+|+|||.|||.+.. +.
T Consensus 82 -----------------------------------------------------gsI~V~DnGrGIPv~~h~~~~~~~~e~ 108 (408)
T 3lnu_A 82 -----------------------------------------------------GSCEVSDDGRGMPVDIHPEEKIPGVEL 108 (408)
T ss_dssp -----------------------------------------------------SCEEEEECSSCCCCSBCTTTCSBHHHH
T ss_pred -----------------------------------------------------CeEEEEEcCCCCCcccccccCCcchhe
Confidence 26999999999999885 45
Q ss_pred hhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCC-
Q 008575 171 MFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENK- 246 (561)
Q Consensus 171 iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~- 246 (561)
+|..+++|+||. ++.+.|.+|+|++++..+|. .++|+++..|. .|. ..+. .+.|.- ........
T Consensus 109 i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~-----~l~v~v~rdGk--~~~--q~f~--~G~~~~-~l~~ig~~~ 176 (408)
T 3lnu_A 109 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALST-----KVELFIKREGS--EHR--MEFR--DGNAAS-KLEVVGTVG 176 (408)
T ss_dssp HHHCC--------------------CHHHHHHTEE-----EEEEEEEETTE--EEE--EEEE--TTEECS-CCEEEEECC
T ss_pred EEEecccCCCcCCCceeecCCccccccceehhccC-----eEEEEEEECCE--EEE--EEEC--CCEECC-CceEeccCc
Confidence 798889999994 45678899999999998874 57888887553 343 3333 343321 11101011
Q ss_pred CCCCCcEEEEEecCC-c---chhHHHHHHHHHHHHhhCCCcEEEEE
Q 008575 247 DRWHGAEIQVVIEGN-W---TTYRSKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 247 ~~~~GT~V~V~L~~n-~---~~~r~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
...+||+|++..... | ......+.+.|+++|..||.++|.|.
T Consensus 177 ~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~ 222 (408)
T 3lnu_A 177 KKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLH 222 (408)
T ss_dssp TTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 246899999984332 2 12235688999999999999999987
No 17
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.67 E-value=4e-16 Score=166.52 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=141.7
Q ss_pred CCCcccccccCCHHHHHHhccccc-CccCCC----------------------chHHHHHHHHHHcHHHHHhhcCCCCeE
Q 008575 16 KTPNESALKQKSPAEFFAENKNIA-GFDNPG----------------------KSLYTTVRELVENSLDSAESISELPVV 72 (561)
Q Consensus 16 ~~~~~~~~~~~S~aEff~~nk~i~-Gfdn~~----------------------k~L~t~irelVeNslDa~e~~~~lP~I 72 (561)
+...++.++.++..|.+.+...+. |..++. ..||.++.|+|+||+|+|...|..+.|
T Consensus 10 ~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I 89 (418)
T 1pvg_A 10 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 89 (418)
T ss_dssp --CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEE
Confidence 345667899999999999999976 877763 699999999999999999887888999
Q ss_pred EEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCee
Q 008575 73 EITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFY 152 (561)
Q Consensus 73 ~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (561)
.|+|... ..
T Consensus 90 ~V~i~~d-----------------------------------------------------------------------~~ 98 (418)
T 1pvg_A 90 DVNIHAE-----------------------------------------------------------------------EH 98 (418)
T ss_dssp EEEEETT-----------------------------------------------------------------------TT
T ss_pred EEEEECC-----------------------------------------------------------------------CC
Confidence 9999643 14
Q ss_pred EEEEEeCCCCCCcCChhh--------hhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceE
Q 008575 153 RVTCKDNGKGMPHDDIPN--------MFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFI 221 (561)
Q Consensus 153 ~I~V~DNG~GI~~e~l~~--------iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~ 221 (561)
.|+|+|||+|||.+..+. +|..+++|+||. ++.+.|.+|+|++++..+|. .++|+++...++..
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~-----~l~V~v~r~rdGk~ 173 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST-----EFILETADLNVGQK 173 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEE-----EEEEEEEETTTTEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccc-----eEEEEEEECCCCcE
Confidence 799999999999988654 899999999994 45678999999999999875 57888875223344
Q ss_pred EEEEEEeec-cCCCceeeeeccccCCCCCCCcEEEEEecCC-c-----chhH-HHHHHHHHHHHhhCCCcEEEEE
Q 008575 222 SFCKLDIDI-HRNIPHVHLHEKRENKDRWHGAEIQVVIEGN-W-----TTYR-SKILHYMRQMAVITPYAQFLFK 288 (561)
Q Consensus 222 ~~~~L~id~-~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n-~-----~~~r-~~I~eyLrr~AIvnP~a~~~l~ 288 (561)
|...+.-.. ....|.+ . .. ....+||+|++..... | .... ..+...++.+|..||+++|.|.
T Consensus 174 y~q~f~~G~~~~~~p~i-~--~~--~~~~tGT~V~F~PD~~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~ 243 (418)
T 1pvg_A 174 YVQKWENNMSICHPPKI-T--SY--KKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLN 243 (418)
T ss_dssp EEEEEETTTTEECCCEE-E--EC--CSSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEET
T ss_pred EEEEEEcCCCccCCCee-c--cc--CCCCCceEEEEEEChHHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 544433110 1222321 1 11 1246899999985432 2 1111 1268999999999999999986
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.61 E-value=6.3e-16 Score=152.97 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc---------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG---------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFIS 222 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~---------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~ 222 (561)
..|+|.|||+||+++++...|+++.++++.. ..++.|++|+||+.+.+++ .+++|.|+..+ ..++
T Consensus 79 ~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~va-----d~v~V~Sr~~~-~~~~ 152 (228)
T 3t0h_A 79 RTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA-----EKVTVITKHND-DEQY 152 (228)
T ss_dssp TEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE-----EEEEEEEECTT-SCEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccC-----CEEEEEEecCC-CCcE
Confidence 4799999999999999999999885433211 1356799999999987654 37999999865 3456
Q ss_pred EEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHH--hhCC
Q 008575 223 FCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMA--VITP 281 (561)
Q Consensus 223 ~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~A--IvnP 281 (561)
.|+. + .+ +. ....+.+.....+||+|+|.|..+... ...+|.++++++| +.+|
T Consensus 153 ~w~~--~--g~-~~-~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 153 AWES--S--AG-GS-FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp EEEE--C--ST-TE-EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSC
T ss_pred EEEE--c--CC-ce-EEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCC
Confidence 6553 3 22 22 121222112457999999998876432 2467999999999 7777
No 19
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.57 E-value=1.7e-15 Score=152.16 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=83.1
Q ss_pred eeEEEEEeCCCCCCcCChhhhhccccccccc-c---------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCce
Q 008575 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY-G---------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNF 220 (561)
Q Consensus 151 ~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~-~---------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~ 220 (561)
...|+|.|||+||+++++...|+++. +|+. . ...+.|++|+||+.+.+++ .+++|.|+..+ ..
T Consensus 106 ~~~I~I~DnG~GMt~edl~~~l~~ia-~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Va-----dkv~V~Sr~~~-~~ 178 (256)
T 3o0i_A 106 DRTLTIVDTGIGMTKADLINNLGTIA-KSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA-----EKVTVITKHND-DE 178 (256)
T ss_dssp TTEEEEEECSCCCCHHHHHTHHHHHH-HHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE-----EEEEEEEECTT-SC
T ss_pred ceEEEEecCCCCcCHHHHHHHHHhhc-cccccchhhhhcccCCccccCCCcchHHHhhccC-----CeEEEEEcCCC-Cc
Confidence 35799999999999999999998885 4332 1 2356899999999987654 37999999865 34
Q ss_pred EEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHH--hhCC
Q 008575 221 ISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMA--VITP 281 (561)
Q Consensus 221 ~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~A--IvnP 281 (561)
+|.|+. + .+....+. +.+.....+||+|+|.|..+... ...+|.+.++++| |.+|
T Consensus 179 g~~w~s--~--gg~~~~v~--~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~P 237 (256)
T 3o0i_A 179 QYAWES--S--AGGSFTVR--TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 237 (256)
T ss_dssp EEEEEE--C--STTEEEEE--ECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSC
T ss_pred eEEEEE--e--ccceEEEe--eCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCC
Confidence 566654 2 22111122 21112457999999998776432 3467999999999 8887
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.54 E-value=7e-15 Score=143.92 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=79.1
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccc------c---ccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK------Y---GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFIS 222 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK------~---~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~ 222 (561)
..|+|.|||+||+++++...|+++.++++ + ......|++|+|+..+.++ +.+++|.|+..+. .++
T Consensus 73 ~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~-----~~~v~v~S~~~~~-~~~ 146 (220)
T 2wer_A 73 KVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLV-----ADRVQVISKSNDD-EQY 146 (220)
T ss_dssp TEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGT-----EEEEEEEEECTTS-CCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhc-----CCeeEEEEecCCC-cee
Confidence 47999999999999999999998865432 1 1124568899999777543 4589999998663 355
Q ss_pred EEEEEeeccCCCceeeeecccc-CCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHhhC
Q 008575 223 FCKLDIDIHRNIPHVHLHEKRE-NKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAVIT 280 (561)
Q Consensus 223 ~~~L~id~~kN~p~Il~~e~~~-~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AIvn 280 (561)
.|.. + .+ +.+ ...+.+ ....++||+|+|.|...+.. ...+|.++++++|..-
T Consensus 147 ~~~~--~--~~-~~~-~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l 201 (220)
T 2wer_A 147 IWES--N--AG-GSF-TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFV 201 (220)
T ss_dssp EEEE--C--SS-SEE-EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTC
T ss_pred EEEe--C--CC-Cce-EeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcC
Confidence 5553 2 11 221 111111 12457899999998876522 3467999999997543
No 21
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.53 E-value=6.5e-15 Score=145.86 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc-----------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCC--
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSH-- 218 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~-- 218 (561)
..|+|.|||+||+++++...|+++.++.+.. ..+..|++|+|+..+.++ +..++|.|+..+.
T Consensus 94 ~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~-----~~~v~V~Sr~~~~~~ 168 (235)
T 2ior_A 94 RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV-----ADKVTVRTRAAGEKP 168 (235)
T ss_dssp TEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT-----EEEEEEEEECTTSCG
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhC-----cCeEEEEEecCCCCC
Confidence 3699999999999999999999886443211 123468999999877543 4579999998765
Q ss_pred ceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcc--hhHHHHHHHHHHHH--hhCC
Q 008575 219 NFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT--TYRSKILHYMRQMA--VITP 281 (561)
Q Consensus 219 ~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~--~~r~~I~eyLrr~A--IvnP 281 (561)
..++.|.+ + .+....+. +. ...++||+|+|.|..... ....+|.++++++| +.+|
T Consensus 169 ~~~~~w~~--~--~~~~~~i~--~~--~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 169 ENGVFWES--A--GEGEYTVA--DI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp GGEEEEEE--C--SSSEEEEE--EE--CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSC
T ss_pred ceeEEEEe--c--CCCcEEEe--eC--CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCC
Confidence 55666654 3 22111122 11 145799999999875431 13467999999998 6666
No 22
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.50 E-value=1.9e-14 Score=145.20 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=79.9
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc---------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG---------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFIS 222 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~---------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~ 222 (561)
..|+|.|||+||+++++...|+++.++++.. .....|++|+|+..+.+++ .+++|.|+..+. .++
T Consensus 115 ~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va-----~~v~V~Sr~~~~-~~~ 188 (264)
T 1yc1_A 115 RTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA-----EKVTVITKHNDD-EQY 188 (264)
T ss_dssp TEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE-----EEEEEEEECTTS-CCE
T ss_pred eEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC-----CEEEEEEecCCC-ceE
Confidence 4799999999999999999999986443321 1235688999999887653 479999998664 355
Q ss_pred EEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcc--hhHHHHHHHHHHHHhhCC
Q 008575 223 FCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWT--TYRSKILHYMRQMAVITP 281 (561)
Q Consensus 223 ~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~--~~r~~I~eyLrr~AIvnP 281 (561)
.|+. + .+ +. ....+.+....++||+|+|.|..... ....+|.++++++|..-|
T Consensus 189 ~w~~--~--~~-~~-~~i~~~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~ 243 (264)
T 1yc1_A 189 AWES--S--AG-GS-FTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIG 243 (264)
T ss_dssp EEEE--C--ST-TE-EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCS
T ss_pred EEEE--c--CC-ce-EEEeecCCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCC
Confidence 5553 2 11 22 12122111245799999999876431 134679999999975443
No 23
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.44 E-value=4.2e-13 Score=147.81 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=85.6
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc-----------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCC--C
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRS--H 218 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g--~ 218 (561)
..|+|.|||+||+++++...|+++.++++.. ..+..|++|+|+..+.+++ .+++|.|+..+ .
T Consensus 74 ~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va-----dkV~V~Sr~~~~~~ 148 (559)
T 1y4s_A 74 RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA-----DKVTVRTRAAGEKP 148 (559)
T ss_dssp TEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE-----EEEEEEEECSSSCG
T ss_pred cEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc-----CeEEEEEcCCCCCC
Confidence 4799999999999999999999985443211 1246799999999888764 37999999876 2
Q ss_pred ceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHH--hhCCCcEE
Q 008575 219 NFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMA--VITPYAQF 285 (561)
Q Consensus 219 ~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~A--IvnP~a~~ 285 (561)
..++.|+. + .+ +.. ...+. ....+||+|+|.|...... ...+|.+.++++| +.+| +.|
T Consensus 149 ~~~~~w~s--~--g~-~~~-~i~~~--~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 149 ENGVFWES--A--GE-GEY-TVADI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp GGEEEEEE--C--SS-SEE-EEEEE--CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred CeeEEEEE--e--CC-Cee-EEeEC--CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 55666664 2 11 221 11122 1347999999999876532 2467999999999 8888 655
No 24
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.43 E-value=6.3e-13 Score=128.75 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=81.8
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.|||+||++|+...+....|.|.+...
T Consensus 136 ~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~--------------------------------------------- 170 (258)
T 2c2a_A 136 PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--------------------------------------------- 170 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC---------------------------------------------
Confidence 35699999999999999997654334577766543
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||++++++++|++||++.... ....++.||||+++..+...+
T Consensus 171 ------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-~~~~~G~GLGL~i~~~iv~~~ 225 (258)
T 2c2a_A 171 ------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSL-TYEVPGTGLGLAITKEIVELH 225 (258)
T ss_dssp ------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------CCCTHHHHHHHHHHT
T ss_pred ------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCC-CCCCCCcchHHHHHHHHHHHc
Confidence 4578999999999999999999999997543321 112345799999999998875
Q ss_pred CCccEEEEeeeCCCceEEEEEEEe
Q 008575 205 TGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
||.|+|.|.. +.++.+.+.|+.
T Consensus 226 -gG~i~v~s~~-~~Gt~f~i~lP~ 247 (258)
T 2c2a_A 226 -GGRIWVESEV-GKGSRFFVWIPK 247 (258)
T ss_dssp -TCEEEEEEET-TTEEEEEEEEEC
T ss_pred -CCEEEEEecC-CCCcEEEEEeeC
Confidence 7789999986 555555555543
No 25
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.42 E-value=2.1e-13 Score=135.30 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=75.6
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc----c----------ccCCCcceeehHhhHHHHHHhCCccEEEEeeeCC
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG----L----------KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRS 217 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~----~----------~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g 217 (561)
..|+|.|||+||+++++...|+++.++++.. + ....|++|+|+.++.+++ .+++|.|+..+
T Consensus 79 ~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va-----~~v~V~Sr~~~ 153 (236)
T 2gqp_A 79 NLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA-----DKVIVTSKHNN 153 (236)
T ss_dssp TEEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE-----EEEEEEEECTT
T ss_pred CEEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC-----CEEEEEEeCCC
Confidence 4799999999999999999999886553321 0 123477999998887665 47999999866
Q ss_pred CceEEEEEEEeeccCCCceeeeecccc-CCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHhhC
Q 008575 218 HNFISFCKLDIDIHRNIPHVHLHEKRE-NKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAVIT 280 (561)
Q Consensus 218 ~~~~~~~~L~id~~kN~p~Il~~e~~~-~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AIvn 280 (561)
. .++.|+. +. +.+ ...+.+ ....++||+|+|.|..+... ...+|.++++++|-.-
T Consensus 154 ~-~~~~w~~--~g----g~~-~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i 211 (236)
T 2gqp_A 154 D-TQHIWES--DS----NEF-SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFI 211 (236)
T ss_dssp S-CCEEEEE--SS----SCE-EEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTC
T ss_pred C-ceEEEEE--eC----CEE-EEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhC
Confidence 4 3555553 31 222 111111 12357999999998765421 3467999999998443
No 26
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.40 E-value=2.3e-13 Score=135.49 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=78.6
Q ss_pred eeEEEEEeCCCCCCcCChhhhhccccccccc---------ccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceE
Q 008575 151 FYRVTCKDNGKGMPHDDIPNMFGRVLSGTKY---------GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFI 221 (561)
Q Consensus 151 ~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~---------~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~ 221 (561)
...|+|.|||+||+++++...++++..+++. ...+..|++|+|+..+.+++ .+++|.|+..+. ..
T Consensus 85 ~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~va-----dkv~V~Sk~~~~-~~ 158 (239)
T 3nmq_A 85 ERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA-----EKVVVITKHNDD-EQ 158 (239)
T ss_dssp TTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE-----EEEEEEEECTTS-CC
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccC-----CEEEEEEeeCCC-ce
Confidence 3579999999999999998888876544321 11345799999999987764 479999998543 45
Q ss_pred EEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHh
Q 008575 222 SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAV 278 (561)
Q Consensus 222 ~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AI 278 (561)
+.|+.. .+..-.+.. .+.....+||+|++.|..+... ...+|.+++++++-
T Consensus 159 ~~W~s~----~~g~fti~~--~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~ 211 (239)
T 3nmq_A 159 YAWESS----AGGSFTVRA--DHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQ 211 (239)
T ss_dssp EEEEEC----STTEEEEEE--CCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCT
T ss_pred eEEEEC----CCCcEEEEe--cCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHh
Confidence 666642 111111222 1112346999999999876422 23568999999853
No 27
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.39 E-value=5.3e-13 Score=135.64 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=81.2
Q ss_pred eEEEEEeCCCCCCcCChhhhhccccccccc----------ccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY----------GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFI 221 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~----------~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~ 221 (561)
..|+|.|||+||+++++...++++.++++. ...+..|++|+|+..+.+++ ..++|.|+..+. .+
T Consensus 93 ~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~va-----dkV~V~Sk~~~~-~~ 166 (281)
T 3peh_A 93 NILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA-----DKVIVYTKNNDD-EQ 166 (281)
T ss_dssp TEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTE-----EEEEEEEECTTS-CC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcccc-----CEEEEEEecCCC-CE
Confidence 579999999999999999888877544321 11245799999999987654 479999998654 46
Q ss_pred EEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHhhCCC
Q 008575 222 SFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAVITPY 282 (561)
Q Consensus 222 ~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AIvnP~ 282 (561)
|.|+..- +..-.+...+ ......+||+|++.|..+... ...+|.+++++++-.-|+
T Consensus 167 ~~Wes~g----~g~fti~~~~-~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~ 224 (281)
T 3peh_A 167 YIWESTA----DAKFTIYKDP-RGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQF 224 (281)
T ss_dssp EEEEEET----TSCEEEEECT-TCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCS
T ss_pred EEEEECC----CccEEEEEcC-CCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCc
Confidence 6676432 1122222211 011346899999999876432 235789999998655444
No 28
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.39 E-value=2e-13 Score=152.07 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=83.3
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccccc-----------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCC--C
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRS--H 218 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g--~ 218 (561)
..|+|.|||+||+.+++...|+++.++++.. ..+..|++|+|+..+.+++ .+++|.|+..+ .
T Consensus 74 ~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va-----dkV~V~Sr~~~~~~ 148 (624)
T 2ioq_A 74 RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA-----DKVTVRTRAAGEKP 148 (624)
T ss_dssp TEEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE-----EEEEEEEECTTSCG
T ss_pred cEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC-----CeEEEEECCCCCCC
Confidence 4799999999999999999999885443211 1234588999998887764 37999999876 4
Q ss_pred ceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHH--hhCCCcEE
Q 008575 219 NFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMA--VITPYAQF 285 (561)
Q Consensus 219 ~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~A--IvnP~a~~ 285 (561)
..++.|+. +.. +.-.+ . +. ....+||+|+|.|..+... ...+|.+.++++| +.+| +.|
T Consensus 149 ~~~~~w~s--~g~-~~~~i-~--~~--~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 149 ENGVFWES--AGE-GEYTV-A--DI--TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp GGEEEEEE--CSS-SCCEE-E--EE--CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred CeeEEEEE--eCC-CeEEE-E--EC--CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 55666664 211 11111 2 22 1347999999999876532 2467999999999 8888 666
No 29
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.39 E-value=1e-13 Score=140.18 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhccccccccc------c--------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCC
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKY------G--------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRS 217 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~------~--------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g 217 (561)
..|+|.|||+||+.+++...|+++.++++. . .....|++|+|+.++.+++ .+++|.|+..+
T Consensus 75 ~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va-----~~v~V~Sk~~~ 149 (269)
T 1qy5_A 75 NLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA-----DKVIVTSKHNN 149 (269)
T ss_dssp TEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE-----EEEEEEEECTT
T ss_pred eEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc-----ceEEEEEEecC
Confidence 578999999999999999999887544221 1 0123488999999988765 47999999866
Q ss_pred CceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHhhCC
Q 008575 218 HNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAVITP 281 (561)
Q Consensus 218 ~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AIvnP 281 (561)
. .++.|.. +. +.-.+ .... ......+||+|+|.|..+... ...+|.+.+++++-.-|
T Consensus 150 ~-~~~~w~s--~g--g~~~i-~~~~-~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~ 208 (269)
T 1qy5_A 150 D-TQHIWES--DS--NEFSV-IADP-RGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFIN 208 (269)
T ss_dssp S-CCEEEEE--CS--SCEEE-EECT-TCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCS
T ss_pred C-cEEEEEE--eC--CEEEE-Eecc-CCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccc
Confidence 4 4566653 21 21122 2111 011346899999998765321 23568888888864433
No 30
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.34 E-value=6.2e-12 Score=130.87 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=86.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcC-----CCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESIS-----ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEAR 119 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~-----~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~ 119 (561)
...|.+++.|||+||++|+.+.+ ..|.|.|++...
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~---------------------------------------- 275 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN---------------------------------------- 275 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC----------------------------------------
Confidence 56899999999999999998754 346799988654
Q ss_pred HHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhccccccccccc----------------
Q 008575 120 AQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGL---------------- 183 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~---------------- 183 (561)
++.+.|+|+|||+||++++++++|++||++.....
T Consensus 276 -----------------------------~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~ 326 (388)
T 1gkz_A 276 -----------------------------DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHS 326 (388)
T ss_dssp -----------------------------SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------------------
T ss_pred -----------------------------CCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhccccc
Confidence 46799999999999999999999999975443210
Q ss_pred ---ccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEE
Q 008575 184 ---KQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLD 227 (561)
Q Consensus 184 ---~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~ 227 (561)
....++.|+||+++..++..+ ||.|.|.|.. |.++.+.+.|.
T Consensus 327 ~~~~~~~~G~GLGL~i~r~i~~~~-gG~i~v~s~~-g~Gt~f~i~LP 371 (388)
T 1gkz_A 327 GGQSGPMHGFGFGLPTSRAYAEYL-GGSLQLQSLQ-GIGTDVYLRLR 371 (388)
T ss_dssp -----CCSCSSCHHHHHHHHHHHT-TCEEEEEEET-TTEEEEEEEEE
T ss_pred ccCCCCcCCccCCHHHHHHHHHHh-CCEEEEEecC-CCcEEEEEEec
Confidence 011256899999999999875 7789999985 55555555554
No 31
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.34 E-value=3.8e-12 Score=133.57 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=88.7
Q ss_pred CchHHHHHHHHHHcHHHHHhhcC----CCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESIS----ELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARA 120 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~----~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~ 120 (561)
...|.+++.|||+||++|+.+.+ ..|.|.|++...
T Consensus 241 ~~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~----------------------------------------- 279 (407)
T 2q8g_A 241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLG----------------------------------------- 279 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEEC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC-----------------------------------------
Confidence 35799999999999999998754 256799988654
Q ss_pred HHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccc-----cccCCCcceeehH
Q 008575 121 QELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----LKQTRGKFGLGAK 195 (561)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----~~~s~G~~GlGL~ 195 (561)
.+.+.|+|+|||+||++++++++|++||++.+.+ .....++.|+||+
T Consensus 280 ----------------------------~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~ 331 (407)
T 2q8g_A 280 ----------------------------NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLP 331 (407)
T ss_dssp ----------------------------SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHH
T ss_pred ----------------------------CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHH
Confidence 4679999999999999999999999998554421 1122357899999
Q ss_pred hhHHHHHHhCCccEEEEeeeCCCceEEEEEEEe
Q 008575 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 196 la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
++..++..+ ||.|+|.|.. |.++.+.+.|..
T Consensus 332 Ivr~i~~~~-gG~i~v~s~~-g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 332 ISRLYAQYF-QGDLKLYSLE-GYGTDAVIYIKA 362 (407)
T ss_dssp HHHHHHHHT-TCEEEEEEET-TTEEEEEEEEES
T ss_pred HHHHHHHHh-CCEEEEEEcC-CCceEEEEEECC
Confidence 999999875 7789999986 555566656554
No 32
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.34 E-value=5e-12 Score=132.14 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCC----CCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISE----LPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARA 120 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~----lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~ 120 (561)
...|.+++.|||+||++|+.+.+. .|.|.|++...
T Consensus 228 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~----------------------------------------- 266 (394)
T 2e0a_A 228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG----------------------------------------- 266 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC-----------------------------------------
Confidence 357999999999999999987652 56799988654
Q ss_pred HHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccc-----cccCCCcceeehH
Q 008575 121 QELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----LKQTRGKFGLGAK 195 (561)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----~~~s~G~~GlGL~ 195 (561)
.+.+.|+|+|||+||++++++++|++||++.+.. .....++.|+||+
T Consensus 267 ----------------------------~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~ 318 (394)
T 2e0a_A 267 ----------------------------KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLP 318 (394)
T ss_dssp ----------------------------SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHH
T ss_pred ----------------------------CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHH
Confidence 4679999999999999999999999997554420 1122356899999
Q ss_pred hhHHHHHHhCCccEEEEeeeCCCceEEEEEEEe
Q 008575 196 MALIWSKMSTGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 196 la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
++..++..+ ||.|.|.|.. +.++.+.+.|..
T Consensus 319 i~~~i~~~~-gG~i~v~s~~-g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 319 ISRLYAKYF-QGDLNLYSLS-GYGTDAIIYLKA 349 (394)
T ss_dssp HHHHHHHHT-TCEEEEEEET-TTEEEEEEEEES
T ss_pred HHHHHHHHh-CCEEEEEecC-CccEEEEEEeCC
Confidence 999999875 7789999976 555556656554
No 33
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.31 E-value=6.1e-12 Score=131.34 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=84.7
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCC----CCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISE----LPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARA 120 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~----lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~ 120 (561)
...|.+++.|||+||++|+.+.+. .|.|.|++...
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~----------------------------------------- 267 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALG----------------------------------------- 267 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC-----------------------------------------
Confidence 357999999999999999987652 46799988654
Q ss_pred HHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccc----cccCCCcceeehHh
Q 008575 121 QELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG----LKQTRGKFGLGAKM 196 (561)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~----~~~s~G~~GlGL~l 196 (561)
.+.+.|+|+|||+||++++++++|++||++.... .....++.|+||++
T Consensus 268 ----------------------------~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i 319 (394)
T 2btz_A 268 ----------------------------EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPI 319 (394)
T ss_dssp ----------------------------SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHH
T ss_pred ----------------------------CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHH
Confidence 4679999999999999999999999997544420 11223568999999
Q ss_pred hHHHHHHhCCccEEEEeeeCCCceEEEEEEEe
Q 008575 197 ALIWSKMSTGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 197 a~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
+..++..+ ||.|.|.|.. |.++.+.+.|..
T Consensus 320 ~~~i~~~~-gG~i~v~s~~-g~Gt~f~i~lP~ 349 (394)
T 2btz_A 320 SRLYAKYF-QGDLQLFSME-GFGTDAVIYLKA 349 (394)
T ss_dssp HHHHHHHT-TCEEEEEEET-TTEEEEEEEEES
T ss_pred HHHHHHHh-CCEEEEEecC-CCceEEEEEecC
Confidence 99999875 7789999976 555566656554
No 34
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.5e-12 Score=141.39 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=81.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccc------cc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEE
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK------YG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFIS 222 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK------~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~ 222 (561)
..|+|.|||+||+.+++...|+++.++++ +. ..+..|++|+|+..+.+++ .+++|.|+..+. .++
T Consensus 73 ~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~va-----dkV~V~Sk~~~~-~~~ 146 (677)
T 2cg9_A 73 KVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVA-----DRVQVISKSNDD-EQY 146 (677)
T ss_dssp TEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTE-----EEEEEEEECTTS-CEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcC-----cEEEEEEccCCC-ceE
Confidence 47999999999999999999998854433 21 1245799999998886654 589999998764 456
Q ss_pred EEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHhhCCC
Q 008575 223 FCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAVITPY 282 (561)
Q Consensus 223 ~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AIvnP~ 282 (561)
.|+..- +...-+.... ......+||+|+|.|..++.. ...+|.+.+++++-.-|+
T Consensus 147 ~W~s~g----~~~~ti~~~~-~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~ 203 (677)
T 2cg9_A 147 IWESNA----GGSFTVTLDE-VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAY 203 (677)
T ss_dssp EEEECS----SSEEEEEECC-SSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSS
T ss_pred EEEEcC----CceEEEeecC-CCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCC
Confidence 666421 1111112110 012457999999999877642 246799999998755443
No 35
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.30 E-value=5.1e-12 Score=133.43 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=84.6
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCC-----CCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISE-----LPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEAR 119 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~-----lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~ 119 (561)
...|.+++.|||+||++|+.+.+. .|.|.|++...
T Consensus 251 ~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~---------------------------------------- 290 (419)
T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG---------------------------------------- 290 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC----------------------------------------
Confidence 356999999999999999987542 46798888653
Q ss_pred HHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccc-----cccCCCcceeeh
Q 008575 120 AQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-----LKQTRGKFGLGA 194 (561)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~-----~~~s~G~~GlGL 194 (561)
.+.+.|+|+|||+||++++++++|++||++.+.. .....++.||||
T Consensus 291 -----------------------------~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL 341 (419)
T 1y8o_A 291 -----------------------------KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGL 341 (419)
T ss_dssp -----------------------------SSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHH
T ss_pred -----------------------------CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCH
Confidence 4679999999999999999999999997554420 112245689999
Q ss_pred HhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEe
Q 008575 195 KMALIWSKMSTGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 195 ~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
+++..++..+ ||.|.|.|.. |.++.+.+.|..
T Consensus 342 ~I~k~iv~~~-gG~I~v~s~~-g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 342 PISRLYARYF-QGDLKLYSME-GVGTDAVIYLKA 373 (419)
T ss_dssp HHHHHHHHHT-TCEEEEEEET-TTEEEEEEEEES
T ss_pred HHHHHHHHHh-CCEEEEEecC-CCCEEEEEEecC
Confidence 9999999875 7789999986 555666666654
No 36
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.30 E-value=2.7e-12 Score=128.96 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCCCcCChhhhhcccccccccc----------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCC
Q 008575 149 ASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG----------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSH 218 (561)
Q Consensus 149 ~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~----------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~ 218 (561)
.+...|+|.|||+||+.+++...|+++.++++.. .....|++|+|+..+.+++ .+++|.|+. .
T Consensus 127 k~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVA-----dkV~V~Sk~--d 199 (272)
T 3ied_A 127 KEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVS-----NRVEVYTKK--E 199 (272)
T ss_dssp TTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTE-----EEEEEEEES--S
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccC-----CEEEEEEcC--C
Confidence 3456899999999999999999998875443211 1234699999999988764 489999993 3
Q ss_pred ceEEEEEEEeeccCCCceeeeeccc----cCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHHh
Q 008575 219 NFISFCKLDIDIHRNIPHVHLHEKR----ENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMAV 278 (561)
Q Consensus 219 ~~~~~~~L~id~~kN~p~Il~~e~~----~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~AI 278 (561)
..+|.|+..-+ +.-. +..... ......+||+|++.|..+... ...+|.+.+++++-
T Consensus 200 d~~~~WeS~g~---gsft-i~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~ 261 (272)
T 3ied_A 200 DQIYRWSSDLK---GSFS-VNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSE 261 (272)
T ss_dssp SCEEEEEECSS---SEEE-EEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCT
T ss_pred CceEEEEECCC---CCEE-EEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHh
Confidence 45677764311 1111 221110 011346899999999876532 23578899998854
No 37
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.30 E-value=1.3e-11 Score=109.60 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=78.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+.. .|.|++...
T Consensus 42 ~~~l~~il~nLl~NAi~~~~~-----~i~i~~~~~--------------------------------------------- 71 (152)
T 1id0_A 42 QNDFVEVMGNVLDNACKYCLE-----FVEISARQT--------------------------------------------- 71 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-----EEEEEEEEC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCcC-----eEEEEEEec---------------------------------------------
Confidence 457999999999999999853 577777543
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||+++.++++|++|+++.. ..++.|+||+++..+...+
T Consensus 72 ------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~-----~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 72 ------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDT-----LRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTC-----CCTTCCSCHHHHHHHHHHT
T ss_pred ------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccC-----CCCCcccCHHHHHHHHHHc
Confidence 45789999999999999999999999874332 2346799999999988764
Q ss_pred CCccEEEEeeeCCCceEEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+.+.+.. +.+..+.+.|
T Consensus 123 -gG~i~~~~~~-~~G~~~~i~l 142 (152)
T 1id0_A 123 -EGKIVAGESM-LGGARMEVIF 142 (152)
T ss_dssp -TCEEEEEECT-TSSEEEEEEE
T ss_pred -CCEEEEEeCC-CCcEEEEEEE
Confidence 7789998875 3444444444
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.29 E-value=1.5e-11 Score=109.55 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=74.2
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+.. + .|.|++...
T Consensus 44 ~~~l~~il~nLl~NA~~~~~~-~---~I~i~~~~~--------------------------------------------- 74 (150)
T 1ysr_A 44 PAGLRLAVDNAIANAVKHGGA-T---LVQLSAVSS--------------------------------------------- 74 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-S---EEEEEEEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCC-c---EEEEEEEec---------------------------------------------
Confidence 357999999999999999743 2 577777654
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||++++++++|++|+.+... ..++.|+||+++..++..+
T Consensus 75 ------------------------~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~----~~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 75 ------------------------RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA----SHSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp ------------------------TTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCCHHHHHHHHHT
T ss_pred ------------------------CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC----CCCCCCcCHHHHHHHHHHc
Confidence 356899999999999999999999999744321 1345799999999998764
Q ss_pred CCccEEEEeeeCCCceEEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+++.|.. +.+..+.+.|
T Consensus 127 -gG~i~~~~~~-~~G~~~~i~l 146 (150)
T 1ysr_A 127 -GGTASLENSP-LGGARLVLRL 146 (150)
T ss_dssp -TCEEEEEECT-TSSEEEEEEE
T ss_pred -CCEEEEeecC-CCCEEEEEEE
Confidence 7789998875 4444444444
No 39
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.29 E-value=4e-12 Score=142.42 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCCCcCChhhhhcccccccc------cc--------cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCC
Q 008575 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTK------YG--------LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRS 217 (561)
Q Consensus 152 ~~I~V~DNG~GI~~e~l~~iF~r~~~tSK------~~--------~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g 217 (561)
..|+|.|||+||+.+++...|+++.++++ +. .....|++|+|+..+.+++ .+++|.|+..+
T Consensus 92 ~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vA-----dkV~V~Sr~~~ 166 (666)
T 2o1u_A 92 NLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA-----DKVIVTSKHNN 166 (666)
T ss_dssp TEEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGGGGTE-----EEEEEEEECTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhc-----CEEEEEEeeCC
Confidence 47999999999999999999998854422 21 1134699999999887665 47999999876
Q ss_pred CceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCCcch--hHHHHHHHHHHHH--hhCCCcEE
Q 008575 218 HNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTT--YRSKILHYMRQMA--VITPYAQF 285 (561)
Q Consensus 218 ~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n~~~--~r~~I~eyLrr~A--IvnP~a~~ 285 (561)
. .++.|+. +. +.-.+ .... ......+||+|+|.|..+... ...+|.+.++++| +.+| +.|
T Consensus 167 ~-~~~~W~s--~g--g~~ti-~~~~-~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~ 230 (666)
T 2o1u_A 167 D-TQHIWES--DS--NEFSV-IADP-RGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFP-IYV 230 (666)
T ss_dssp S-CCEEEEE--SS--SCCEE-EECT-TCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEE
T ss_pred C-ceEEEEE--eC--CeEEE-Eecc-cCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCc-eEE
Confidence 4 3566653 32 22222 2111 011346899999998776532 2357999999999 8888 544
No 40
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.25 E-value=5.3e-11 Score=109.20 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=82.1
Q ss_pred CCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 008575 44 PGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQEL 123 (561)
Q Consensus 44 ~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~ 123 (561)
+...|.+++.|||+||++|+...+ .|.|++.-..
T Consensus 40 d~~~l~~il~nLl~NAi~~~~~~~---~i~I~i~~~~------------------------------------------- 73 (177)
T 3sl2_A 40 DQDKITQVLDNIISNALKYSPEGG---HVTFSIDVNE------------------------------------------- 73 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTC---CEEEEEEEET-------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---eEEEEEEEcc-------------------------------------------
Confidence 346799999999999999996554 3666664221
Q ss_pred HHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHH
Q 008575 124 QAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKM 203 (561)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l 203 (561)
..+.+.|+|+|||+||+++.++.+|++|+.+..... ...++.|+||+++..+...
T Consensus 74 ------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~-~~~~g~GlGL~iv~~~~~~ 128 (177)
T 3sl2_A 74 ------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART-RKLGGTGLGLAIAKEMVQA 128 (177)
T ss_dssp ------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCHHHHHHHHHHH
T ss_pred ------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC-CCCCCCCcCHHHHHHHHHH
Confidence 246799999999999999999999999975433221 2234679999999998876
Q ss_pred hCCccEEEEeeeCCCceEEEEEEEee
Q 008575 204 STGLPIEISSSMRSHNFISFCKLDID 229 (561)
Q Consensus 204 ~~Gg~I~V~Sk~~g~~~~~~~~L~id 229 (561)
. ||.+++.|.. +.+..+.+.|.+.
T Consensus 129 ~-~G~i~i~~~~-~~Gt~~~i~lP~~ 152 (177)
T 3sl2_A 129 H-GGDIWADSIE-GKGTTITFTLPYK 152 (177)
T ss_dssp T-TCCEEEEEET-TTEEEEEEEEEEE
T ss_pred c-CCEEEEEecC-CCCeEEEEEEeCC
Confidence 4 6789998876 4455555666554
No 41
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.24 E-value=3.3e-11 Score=108.76 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=79.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+ . ..|.|++...
T Consensus 45 ~~~l~~il~nll~NAik~~--~---~~I~i~~~~~--------------------------------------------- 74 (161)
T 1bxd_A 45 PLSIKRAVANMVVNAARYG--N---GWIKVSSGTE--------------------------------------------- 74 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTC--C---SCEEEEEEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhc--C---CeEEEEEEEc---------------------------------------------
Confidence 4579999999999999998 2 3588887654
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||++++++++|++|+.+.... ..++.|+||+++..+...+
T Consensus 75 ------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~---~~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 75 ------------------------PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR---TISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp ------------------------TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC---CCCCCSCCCCTTHHHHHHH
T ss_pred ------------------------CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC---CCCCcccCHHHHHHHHHHc
Confidence 3578999999999999999999999997443321 2356799999999988875
Q ss_pred CCccEEEEeeeCCCceEEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+++.|.. +.+..+.+.|
T Consensus 128 -gG~i~~~~~~-~~G~~~~i~l 147 (161)
T 1bxd_A 128 -NGMLELGTSE-RGGLSIRAWL 147 (161)
T ss_dssp -TSEEEEEEET-TTEEEEEEEE
T ss_pred -CCEEEEEECC-CCeEEEEEEE
Confidence 6789998875 4444444443
No 42
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.21 E-value=8.4e-11 Score=113.93 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=94.2
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|+.+|+|+|+||+|++-. |....|.|+|...
T Consensus 29 ~~gl~~~v~Elv~NsiD~~~a-g~~~~I~V~i~~~--------------------------------------------- 62 (198)
T 3ttz_A 29 ERGLHHLVWEIVDNSIDEALA-GYANQIEVVIEKD--------------------------------------------- 62 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSCCEEEEEEEGG---------------------------------------------
T ss_pred CcchHHHHHHHHHHHHhHHhc-CCCcEEEEEEeCC---------------------------------------------
Confidence 468999999999999999754 5456788887432
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
-.|+|.|||+|||.+. + .++|...-.. .++ ++.+..+|
T Consensus 63 ---------------------------g~i~V~DnG~Gip~~~-------h-~~~~~~~~e~--i~t--~SvVNALS--- 100 (198)
T 3ttz_A 63 ---------------------------NWIKVTDNGRGIPVDI-------Q-EKMGRPAVEV--ILT--SSVVNALS--- 100 (198)
T ss_dssp ---------------------------GEEEEEECSSCCCCSB-------C-TTTSSBHHHH--HHH--TCHHHHTE---
T ss_pred ---------------------------CeEEEEECCCCccccc-------c-CcCCCccccc--cce--eEehhhhc---
Confidence 1799999999999972 2 3444311000 011 55555543
Q ss_pred CCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCC-c----chhHHHHHHHHHHHHhh
Q 008575 205 TGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGN-W----TTYRSKILHYMRQMAVI 279 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n-~----~~~r~~I~eyLrr~AIv 279 (561)
..++|+++..|. .| .+.+. .+.+.- ...... ....+||+|++..... | ......+.+.|+++|+.
T Consensus 101 --~~l~v~v~r~g~--~~--~~~f~--~G~~~~-~l~~i~-~~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~l 170 (198)
T 3ttz_A 101 --QDLEVYVHRNET--IY--HQAYK--KGVPQF-DLKEVG-TTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFL 170 (198)
T ss_dssp --EEEEEEEEETTE--EE--EEEEE--TTEESS-CCEEEE-ECSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHH
T ss_pred --CeEEEEEEECCc--EE--EEEEe--CCEECC-Cceecc-CCCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhc
Confidence 257888887553 34 44343 343321 111111 1346899999983322 2 22345799999999999
Q ss_pred CCCcEEEEE
Q 008575 280 TPYAQFLFK 288 (561)
Q Consensus 280 nP~a~~~l~ 288 (561)
||.++|+|.
T Consensus 171 n~gv~i~l~ 179 (198)
T 3ttz_A 171 NKGIQITLR 179 (198)
T ss_dssp STTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999997
No 43
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.19 E-value=1e-10 Score=103.46 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+...+ .|.|++...
T Consensus 45 ~~~l~~il~nll~NAi~~~~~~~---~I~i~~~~~--------------------------------------------- 76 (152)
T 3a0y_A 45 RTRIKQVLINLVQNAIEATGENG---KIKITSEDM--------------------------------------------- 76 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC---EEEEEEEEC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC---EEEEEEEec---------------------------------------------
Confidence 35799999999999999995443 577777553
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||++++++++|++|+ +++ .++.|+||+++..+....
T Consensus 77 ------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~-~~~------~~g~GlGL~i~~~~~~~~ 125 (152)
T 3a0y_A 77 ------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFF-TTK------TQGTGLGLSICRKIIEDE 125 (152)
T ss_dssp ------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTC-CCC--------CCCCSHHHHHHHHHTT
T ss_pred ------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhc-cCC------CCCCCcCHHHHHHHHHHh
Confidence 4678999999999999999999999986 333 234699999999888733
Q ss_pred CCccEEEEeee
Q 008575 205 TGLPIEISSSM 215 (561)
Q Consensus 205 ~Gg~I~V~Sk~ 215 (561)
.||.+.+.+..
T Consensus 126 ~gg~~~~~~~~ 136 (152)
T 3a0y_A 126 HGGKIWTENRE 136 (152)
T ss_dssp TSCEEEEEEET
T ss_pred CCcEEEEecCC
Confidence 57889988874
No 44
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.19 E-value=3.9e-11 Score=111.27 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCeeEEEEEeCCCCCCcCCh------------------------hhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 149 ASFYRVTCKDNGKGMPHDDI------------------------PNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 149 ~~~~~I~V~DNG~GI~~e~l------------------------~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
++.+.|+|+|||+||+++++ +++|++||+ ++... ...++.|+||+++..++..+
T Consensus 89 ~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~-~~~~~-~~~~g~GlGL~iv~~~~~~~ 166 (189)
T 1i58_A 89 GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS-TKEKV-SEVSGRGVGMDVVKNVVESL 166 (189)
T ss_dssp TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCS-HHHHH-HGGGTCCCHHHHHHHHHHHT
T ss_pred CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccc-ccccC-CCCCCCccCHHHHHHHHHHc
Confidence 46799999999999999986 889999874 33221 12235799999999888864
Q ss_pred CCccEEEEeeeCCCceEEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+.+.|.. +.+..+.+.|
T Consensus 167 -~G~i~i~s~~-~~Gt~~~i~l 186 (189)
T 1i58_A 167 -NGSISIESEK-DKGTKVTIRL 186 (189)
T ss_dssp -TCEEEEEEET-TTEEEEEEEE
T ss_pred -CCEEEEEeCC-CCceEEEEEE
Confidence 7789998875 4444444444
No 45
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.19 E-value=5.4e-11 Score=105.82 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+...+ ..|.|++........ +
T Consensus 46 ~~~l~~il~nLl~NAik~~~~~~--~~I~i~~~~~~~~~~------------~--------------------------- 84 (160)
T 1r62_A 46 PDQIEQVLLNIVRNALQALGPEG--GEIILRTRTAFQLTL------------H--------------------------- 84 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGC--EEEEEEEEEEEEEEE------------T---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccC--CeEEEEEeccccccc------------c---------------------------
Confidence 35799999999999999997522 358887766521000 0
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.......+.|+|+|||+||++++++++|++|+ +++ .++.|+||+++..++..+
T Consensus 85 --------------------~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~-~~~------~~g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 85 --------------------GERYRLAARIDVEDNGPGIPPHLQDTLFYPMV-SGR------EGGTGLGLSIARNLIDQH 137 (160)
T ss_dssp --------------------TEEEEEEEEEEEEEECTTC---------------------------CHHHHHHHHHHHHT
T ss_pred --------------------ccccccEEEEEEEeCCCCCCHHHHHHhhCccc-cCC------CCCCccCHHHHHHHHHHC
Confidence 00012378999999999999999999999986 333 134799999999988864
Q ss_pred CCccEEEEeeeCCCceEEEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCKLD 227 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L~ 227 (561)
||.+.+.|.. +. ..+.+.|+
T Consensus 138 -gG~l~i~s~~-~~-~~~~i~lP 157 (160)
T 1r62_A 138 -SGKIEFTSWP-GH-TEFSVYLP 157 (160)
T ss_dssp -TCEEEEEEET-TE-EEEEEEEE
T ss_pred -CCeEEEEeCC-CC-EEEEEEEe
Confidence 7789998876 33 44444443
No 46
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.16 E-value=6.9e-11 Score=117.91 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 008575 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125 (561)
Q Consensus 46 k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 125 (561)
..|++++.||++||++|+...+ .|.|++...
T Consensus 243 ~~l~~vl~nLl~NA~k~~~~~~---~i~i~~~~~---------------------------------------------- 273 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATGENG---KIKITSEDM---------------------------------------------- 273 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTC---CEEEEEEEE----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccCCC---EEEEEEEec----------------------------------------------
Confidence 5799999999999999995443 588877654
Q ss_pred HHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhC
Q 008575 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205 (561)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~ 205 (561)
.+.+.|+|+|||+||+++.++++|++|+ ++| .++.|+||+++..+.....
T Consensus 274 -----------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~-~~~------~~g~GlGL~i~~~~v~~~~ 323 (349)
T 3a0r_A 274 -----------------------YTKVRVSVWNSGPPIPEELKEKIFSPFF-TTK------TQGTGLGLSICRKIIEDEH 323 (349)
T ss_dssp -----------------------TTEEEEEEEEESCCCCGGGGTTTSSSCC-CC------------CCCTHHHHHHHHTT
T ss_pred -----------------------CCEEEEEEEECCCCCChHHHhhcCCCCc-cCC------CCCccchHHHHHHHHHHhC
Confidence 4678999999999999999999999987 444 1346999999998887445
Q ss_pred CccEEEEeeeCCCceEEEEEEE
Q 008575 206 GLPIEISSSMRSHNFISFCKLD 227 (561)
Q Consensus 206 Gg~I~V~Sk~~g~~~~~~~~L~ 227 (561)
||.+.+.|.. .++.+.+.|+
T Consensus 324 gg~i~~~~~~--~Gt~f~i~lP 343 (349)
T 3a0r_A 324 GGKIWTENRE--NGVVFIFEIP 343 (349)
T ss_dssp CSBCCEEECS--SEEEEEEEEE
T ss_pred CCEEEEEeCC--CcEEEEEEec
Confidence 8899998874 3444544444
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.16 E-value=7.2e-11 Score=111.90 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|.+++.||++||++|+...+ .|.|++...
T Consensus 121 ~~~l~~il~nLl~NA~~~~~~~~---~i~i~~~~~--------------------------------------------- 152 (244)
T 3d36_A 121 REKFRQCLLNVMKNAIEAMPNGG---TLQVYVSID--------------------------------------------- 152 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCE---EEEEEEEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCCC---eEEEEEEEe---------------------------------------------
Confidence 45799999999999999995443 577777554
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
++.+.|+|+|||+||++++++++|++|+ +++. .++.|+||+++..+...+
T Consensus 153 ------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~-~~~~-----~~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 153 ------------------------NGRVLIRIADTGVGMTKEQLERLGEPYF-TTKG-----VKGTGLGMMVVYRIIESM 202 (244)
T ss_dssp ------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTC-CSSG-----GGCCSCHHHHHHHHHHHT
T ss_pred ------------------------CCEEEEEEEecCCCCCHHHHHHHhcccc-cCCC-----CCCcchhHHHHHHHHHHc
Confidence 4678999999999999999999999986 4431 234699999999988864
Q ss_pred CCccEEEEeeeCCCceEEEEEEEe
Q 008575 205 TGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
||.+++.|.. +.+..+.+.|+.
T Consensus 203 -gG~i~~~~~~-~~G~~~~i~lP~ 224 (244)
T 3d36_A 203 -NGTIRIESEI-HKGTTVSIYLPL 224 (244)
T ss_dssp -TCEEEEEEET-TTEEEEEEEEEC
T ss_pred -CCEEEEEecC-CCcEEEEEEecC
Confidence 7789999885 444555555544
No 48
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.15 E-value=1e-10 Score=113.05 Aligned_cols=102 Identities=25% Similarity=0.377 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 008575 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125 (561)
Q Consensus 46 k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 125 (561)
..|++++.|||+||++|+...+ .|.|++...
T Consensus 154 ~~l~~il~nLl~NA~~~~~~~~---~I~i~~~~~---------------------------------------------- 184 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPPGG---RVTLSARRA---------------------------------------------- 184 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC---EEEEEEEEC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCC---EEEEEEEec----------------------------------------------
Confidence 4699999999999999996543 588877553
Q ss_pred HHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhC
Q 008575 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205 (561)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~ 205 (561)
.+.+.|+|.|||+||+++.++++|++|+ +++ .++.|+||+++..+...+
T Consensus 185 -----------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~-~~~------~~g~GlGL~i~~~~~~~~- 233 (268)
T 4ew8_A 185 -----------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFV-GRD------RGGPGLGLALVKALVELH- 233 (268)
T ss_dssp -----------------------SSEEEEEEEESSCCCCHHHHTTTTSTTC-CCS------SCCCTTHHHHHHHHHHHT-
T ss_pred -----------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHh-cCC------CCCCcccHHHHHHHHHHc-
Confidence 4679999999999999999999999986 333 235699999999988764
Q ss_pred CccEEEEeeeCCCceEEEEEEEe
Q 008575 206 GLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 206 Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
||.|++.|.. +.++.+.+.|+.
T Consensus 234 gG~i~i~s~~-~~Gt~~~i~lP~ 255 (268)
T 4ew8_A 234 GGWVALESEP-GNGSTFTCHLPE 255 (268)
T ss_dssp TCEEEEEECT-TSCEEEEEEEEC
T ss_pred CCEEEEEecC-CCCEEEEEEecC
Confidence 7789999875 445555555543
No 49
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.12 E-value=3e-11 Score=112.88 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=31.6
Q ss_pred EEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEE
Q 008575 154 VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 154 I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
|+|+|||+||+++.++++|++|+++.. ...++.|+||+++..+...+ ||.|++.|.. +.++.+.+.+
T Consensus 148 i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~i~~~i~~~~-gG~i~i~s~~-~~Gt~v~~~~ 214 (222)
T 3jz3_A 148 FIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLSIVQRIAKLH-GMNVEFGNAE-QGGFEAKVSW 214 (222)
T ss_dssp EEEECSCC------------------------------CTHHHHHHHHHHT-TCEEECCBCT-TSSBEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHHHHHHHHHHc-CCEEEEEcCC-CCcEEEEEee
Confidence 889999999999999999999974322 12345799999999988765 7789998876 4444444433
No 50
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.01 E-value=6.3e-10 Score=116.30 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=53.9
Q ss_pred CCeeEEEEEeCCCCCCcCCh------------------------hhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 149 ASFYRVTCKDNGKGMPHDDI------------------------PNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 149 ~~~~~I~V~DNG~GI~~e~l------------------------~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||+++.+ +.+|.+||++.. .. ...++.|+||.++......+
T Consensus 148 ~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~-~~-~~~~G~GlGL~iv~~~v~~~ 225 (379)
T 1b3q_A 148 GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKE-KV-SEVSGRGVGMDVVKNVVESL 225 (379)
T ss_dssp TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHT
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCC-cc-CCCCCccccHHHHHHHHHHC
Confidence 46799999999999999987 889999874433 21 12346799999999888864
Q ss_pred CCccEEEEeeeCCCceEEEEEEEe
Q 008575 205 TGLPIEISSSMRSHNFISFCKLDI 228 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~L~i 228 (561)
||.|+|.|.+ |.++.+.+.|++
T Consensus 226 -gG~i~v~s~~-g~Gt~f~i~lPl 247 (379)
T 1b3q_A 226 -NGSMGIESEK-DKGTKVTIRLPL 247 (379)
T ss_dssp -TCEEEEEEET-TTEEEEEEEEES
T ss_pred -CCEEEEEEcC-CCCeEEEeccCC
Confidence 7799999986 666666666553
No 51
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.98 E-value=1.8e-09 Score=96.28 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...|..++.|||+||++|+.....-..|.|++...
T Consensus 37 ~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--------------------------------------------- 71 (145)
T 1th8_A 37 LTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--------------------------------------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe---------------------------------------------
Confidence 35789999999999999996532234688877654
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHh
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMS 204 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~ 204 (561)
.+.+.|+|+|||+||+ +++++|.+|+ +++. ..++.|+||+++..+..
T Consensus 72 ------------------------~~~~~i~V~D~G~g~~--~~~~~~~~~~-~~~~----~~~~~GlGL~iv~~~~~-- 118 (145)
T 1th8_A 72 ------------------------DGVVHLTVRDEGVGIP--DIEEARQPLF-TTKP----ELERSGMGFTIMENFMD-- 118 (145)
T ss_dssp ------------------------TTEEEEEEEECSSCCS--CHHHHTCCC------------CCCSCHHHHHHHHSS--
T ss_pred ------------------------CCEEEEEEEECCCCcC--hHHHhhcccc-cCCC----CCCCCcchHHHHHHHHh--
Confidence 3678999999999999 8999999986 4432 12346899888866543
Q ss_pred CCccEEEEeeeCCCceEEEEE
Q 008575 205 TGLPIEISSSMRSHNFISFCK 225 (561)
Q Consensus 205 ~Gg~I~V~Sk~~g~~~~~~~~ 225 (561)
.+.+.|.. +.+..+.+.
T Consensus 119 ---~i~~~~~~-~~Gt~v~~~ 135 (145)
T 1th8_A 119 ---EVIVESEV-NKGTTVYLK 135 (145)
T ss_dssp ---EEEEEEET-TTEEEEEEE
T ss_pred ---eEEEEeCC-CCCEEEEEE
Confidence 57777765 444444333
No 52
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.97 E-value=3.3e-09 Score=92.88 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 008575 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125 (561)
Q Consensus 46 k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 125 (561)
..|++++.||++||++|+.. ..|.|++...
T Consensus 39 ~~l~~il~nll~Na~k~~~~----~~i~i~~~~~---------------------------------------------- 68 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHSQA----KTCRVDIQQL---------------------------------------------- 68 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTCC----SEEEEEEEEE----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCC----cEEEEEEEEe----------------------------------------------
Confidence 46889999999999999842 3588887554
Q ss_pred HHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhC
Q 008575 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205 (561)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~ 205 (561)
.+.+.|+|+|||+||+++.+ ++.|+||+++......+
T Consensus 69 -----------------------~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL~~~~~~~~~~- 105 (128)
T 3ehg_A 69 -----------------------WKEVVITVSDDGTFKGEENS-------------------FSKGHGLLGMRERLEFA- 105 (128)
T ss_dssp -----------------------TTEEEEEEEESSCCCSCSSC-------------------CCTTSHHHHHHHHHHHT-
T ss_pred -----------------------CCEEEEEEEECCcCcCcccC-------------------CCCCccHHHHHHHHHHc-
Confidence 46799999999999999876 23589999999888765
Q ss_pred CccEEEEeee
Q 008575 206 GLPIEISSSM 215 (561)
Q Consensus 206 Gg~I~V~Sk~ 215 (561)
||.+++.|.+
T Consensus 106 gG~i~~~s~~ 115 (128)
T 3ehg_A 106 NGSLHIDTEN 115 (128)
T ss_dssp TCEEEEECSS
T ss_pred CCEEEEEeCC
Confidence 7789998876
No 53
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.93 E-value=1.3e-09 Score=106.79 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=72.4
Q ss_pred CchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 008575 45 GKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQ 124 (561)
Q Consensus 45 ~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 124 (561)
...+.+++.||+.||++|+...| .|.|++...
T Consensus 144 ~~~~~qvl~NLl~NA~~a~~~gg---~I~v~~~~~--------------------------------------------- 175 (247)
T 4fpp_A 144 NKPSSRAVLNIAQIAASALPAGG---VATVKGVAA--------------------------------------------- 175 (247)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCC---EEEEEEEEE---------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhcCCCC---eEEEEEEEE---------------------------------------------
Confidence 35788999999999999996544 588877654
Q ss_pred HHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCC--cCChhhhhcccccccccccccCCCcceeehHhhHHHHH
Q 008575 125 AKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMP--HDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSK 202 (561)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~--~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~ 202 (561)
.+.+.|+|+|||+||+ ++.++++|++++ +++ .++.||||+++..++.
T Consensus 176 ------------------------~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~-~~~------~~G~GLGLai~~~iv~ 224 (247)
T 4fpp_A 176 ------------------------DGRFSIIADAKGPRARLRPEVLAGLKGEPL-AEG------LGGPWVQAAYLNALVR 224 (247)
T ss_dssp ------------------------TTEEEEEEEEESTTCCCCHHHHHHHTTCCC-CSS------CHHHHHHHHHHHHHHH
T ss_pred ------------------------CCEEEEEEEEcCCCCCCCHHHHHHhcCCCC-CCC------CCCccHHHHHHHHHHH
Confidence 4678999999998854 555555555543 222 2357999999999998
Q ss_pred HhCCccEEEEeeeCCCceEEEEEE
Q 008575 203 MSTGLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 203 l~~Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
.+ ||.|+|.|.. + +..+.+.|
T Consensus 225 ~h-GG~i~v~s~~-~-G~~f~v~L 245 (247)
T 4fpp_A 225 AA-GGQIAVEIGE-D-RASIAAWV 245 (247)
T ss_dssp HT-TCEEEEEEET-T-EEEEEEEE
T ss_pred Hc-CCEEEEEEcC-C-EEEEEEEe
Confidence 75 8899999874 3 44444433
No 54
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=98.91 E-value=5e-09 Score=123.94 Aligned_cols=186 Identities=17% Similarity=0.205 Sum_probs=117.9
Q ss_pred cccccccCCHHHHHHhccccc-CccCC----------------------CchHHHHHHHHHHcHHHHHhhcCCCCeEEEE
Q 008575 19 NESALKQKSPAEFFAENKNIA-GFDNP----------------------GKSLYTTVRELVENSLDSAESISELPVVEIT 75 (561)
Q Consensus 19 ~~~~~~~~S~aEff~~nk~i~-Gfdn~----------------------~k~L~t~irelVeNslDa~e~~~~lP~I~i~ 75 (561)
.++.+|-+|--|-..+...+. |=-.+ ...||.++.|.|+||.|-+-.-...-.|.|+
T Consensus 8 ~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~ 87 (1177)
T 4gfh_A 8 ASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVN 87 (1177)
T ss_dssp HHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEE
Confidence 345678888888888777754 31111 1289999999999999976443223468888
Q ss_pred EEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEE
Q 008575 76 IEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVT 155 (561)
Q Consensus 76 i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 155 (561)
|... ...|+
T Consensus 88 i~~~-----------------------------------------------------------------------d~sis 96 (1177)
T 4gfh_A 88 IHAE-----------------------------------------------------------------------EHTIE 96 (1177)
T ss_dssp EETT-----------------------------------------------------------------------TTEEE
T ss_pred EECC-----------------------------------------------------------------------CCEEE
Confidence 8521 13799
Q ss_pred EEeCCCCCCcCCh--------hhhhcccccccccc---cccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEE
Q 008575 156 CKDNGKGMPHDDI--------PNMFGRVLSGTKYG---LKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFC 224 (561)
Q Consensus 156 V~DNG~GI~~e~l--------~~iF~r~~~tSK~~---~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~ 224 (561)
|+|||.|||-+.. +-||..+++|+||. ++-+.|.+|+|.+++..+|. .+.|.+.....+..|..
T Consensus 97 V~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~-----~~~vev~~~r~Gk~y~q 171 (1177)
T 4gfh_A 97 VKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST-----EFILETADLNVGQKYVQ 171 (1177)
T ss_dssp EEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE-----EEEEEEEETTTTEEEEE
T ss_pred EEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC-----ceEEEEEEEcCCEEEEE
Confidence 9999999997654 35899999999993 34577889999999998874 34444432222333433
Q ss_pred EEEeeccCCCceeeeeccccCCCCCCCcEEEEEecCC-c---chhHHHHHHHHHHHHhhCCCcE
Q 008575 225 KLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGN-W---TTYRSKILHYMRQMAVITPYAQ 284 (561)
Q Consensus 225 ~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~~n-~---~~~r~~I~eyLrr~AIvnP~a~ 284 (561)
. +..|.+..-...........+||+|++..... | ......+...++++|..|+.+.
T Consensus 172 ~----f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~~~~~ 231 (1177)
T 4gfh_A 172 K----WENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVR 231 (1177)
T ss_dssp E----EETTTTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred E----EECCcccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHHHHhcCCCc
Confidence 3 22444432111111112346899999984322 1 1122346667778887776654
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=98.91 E-value=5.9e-09 Score=97.87 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008575 47 SLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAK 126 (561)
Q Consensus 47 ~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 126 (561)
.|+.++.||++||++|+.. ..|.|++...
T Consensus 130 ~l~~il~nll~Na~k~~~~----~~i~i~~~~~----------------------------------------------- 158 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHSQA----KTCRVDIQQL----------------------------------------------- 158 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCC----SEEEEEEEEE-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCC----CEEEEEEEEe-----------------------------------------------
Confidence 5889999999999999942 2588877654
Q ss_pred HhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhCC
Q 008575 127 NAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTG 206 (561)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~G 206 (561)
.+.+.|+|+|||+||+++.+ ++.|+||+++..+...+ |
T Consensus 159 ----------------------~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL~~~~~~v~~~-g 196 (218)
T 3ehh_A 159 ----------------------WKEVVITVSDDGTFKGEENS-------------------FSKGHGLLGMRERLEFA-N 196 (218)
T ss_dssp ----------------------TTEEEEEEEESSCCCC---------------------------CHHHHHHHHHHHT-T
T ss_pred ----------------------CCEEEEEEEECCcCCCCCCC-------------------CCCCCCHHHHHHHHHHc-C
Confidence 46799999999999999876 23599999999888764 7
Q ss_pred ccEEEEeeeCCCceEEEEEEE
Q 008575 207 LPIEISSSMRSHNFISFCKLD 227 (561)
Q Consensus 207 g~I~V~Sk~~g~~~~~~~~L~ 227 (561)
|.|++.|.+ ++.+.+.|+
T Consensus 197 G~i~~~s~~---Gt~~~i~lP 214 (218)
T 3ehh_A 197 GSLHIDTEN---GTKLTMAIP 214 (218)
T ss_dssp CEEEEECSS---SEEEEEEEE
T ss_pred CEEEEeCCC---CeEEEEEEe
Confidence 799999876 334444444
No 56
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2e-08 Score=86.59 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 008575 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125 (561)
Q Consensus 46 k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 125 (561)
..|++++.||++||++|+.. ..|.|++...
T Consensus 38 ~~l~~il~nll~Na~k~~~~----~~i~i~~~~~---------------------------------------------- 67 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHANA----TSLAINVSVE---------------------------------------------- 67 (124)
T ss_dssp HHHHHHHHHHHHHHHTCTTC----CEEEEEEEEE----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCC----CEEEEEEEeC----------------------------------------------
Confidence 47899999999999999953 2588887654
Q ss_pred HHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhC
Q 008575 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205 (561)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~ 205 (561)
.+ +.|+|+|||+||+++. .|+||+++......+
T Consensus 68 -----------------------~~-~~i~v~D~G~gi~~~~----------------------~GlGL~~~~~~~~~~- 100 (124)
T 3zxq_A 68 -----------------------DD-VRVEVVDDGVGISGDI----------------------TESGLRNLRQRADDA- 100 (124)
T ss_dssp -----------------------EE-EEEEEEECCCSSCGGG----------------------SHHHHHHHHHHHHHH-
T ss_pred -----------------------CC-EEEEEEECCCCCCccc----------------------cccCHHHHHHHHHHh-
Confidence 34 8999999999999875 289999999888765
Q ss_pred CccEEEEeeeCCCceEEEEEE
Q 008575 206 GLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 206 Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+++.|.. +.+..+.+.+
T Consensus 101 gG~i~~~~~~-~~G~~~~i~l 120 (124)
T 3zxq_A 101 GGEFTVENMP-TGGTLLRWSA 120 (124)
T ss_dssp TCEEEEEECT-TSSEEEEEEE
T ss_pred CCEEEEEEcC-CCcEEEEEEE
Confidence 6789998876 3333343333
No 57
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.3e-08 Score=86.53 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 008575 46 KSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125 (561)
Q Consensus 46 k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 125 (561)
..|++++.||++||++|+.. ..|.|++...
T Consensus 42 ~~l~~il~nll~NA~k~~~~----~~i~i~~~~~---------------------------------------------- 71 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHAAA----STLTVRVKVD---------------------------------------------- 71 (129)
T ss_dssp HHHHHHHHHHHHHCCCCSSC----CEEEEEEEES----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCC----ceEEEEEEEc----------------------------------------------
Confidence 47999999999999999832 3588887654
Q ss_pred HHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccccccccCCCcceeehHhhHHHHHHhC
Q 008575 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMST 205 (561)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK~~~~~s~G~~GlGL~la~l~s~l~~ 205 (561)
.+ +.|+|+|||+||+++. .|+||+++..+...+
T Consensus 72 -----------------------~~-~~i~v~D~G~gi~~~~----------------------~GlGL~i~~~~~~~~- 104 (129)
T 3zxo_A 72 -----------------------DD-LCIEVTDNGRGMPDEF----------------------TGSGLTNLRQRAEQA- 104 (129)
T ss_dssp -----------------------SE-EEEEEEECCCCCTTTT----------------------CSHHHHHHHHHHHHT-
T ss_pred -----------------------CC-EEEEEecCCCCCCccc----------------------CCcCHHHHHHHHHHc-
Confidence 35 8999999999999876 389999999988764
Q ss_pred CccEEEEeeeCCCceEEEEEE
Q 008575 206 GLPIEISSSMRSHNFISFCKL 226 (561)
Q Consensus 206 Gg~I~V~Sk~~g~~~~~~~~L 226 (561)
||.+++.+...+.+..+.+.|
T Consensus 105 gG~i~~~~~~~~~G~~~~i~l 125 (129)
T 3zxo_A 105 GGEFTLASMPGASGTVLRWSA 125 (129)
T ss_dssp TCEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEeeCCCCCcEEEEEEe
Confidence 778999888641343343333
No 58
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.97 E-value=0.0011 Score=69.60 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=28.1
Q ss_pred cCccC-CCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEe
Q 008575 39 AGFDN-PGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79 (561)
Q Consensus 39 ~Gfdn-~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~ 79 (561)
.|++. ....|..++.|||.||+.++-..+.-..|.|++...
T Consensus 288 ~~~~~~~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~ 329 (399)
T 3ke6_A 288 IGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALA 329 (399)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc
Confidence 35553 235789999999999999984322224588877654
No 59
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=95.69 E-value=0.009 Score=57.25 Aligned_cols=27 Identities=4% Similarity=-0.159 Sum_probs=18.5
Q ss_pred CeeEEEEEeCCCCCCcCChhhhhcccc
Q 008575 150 SFYRVTCKDNGKGMPHDDIPNMFGRVL 176 (561)
Q Consensus 150 ~~~~I~V~DNG~GI~~e~l~~iF~r~~ 176 (561)
+.+.|.|.|+|+||+++.+..+|...+
T Consensus 144 ~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 144 RQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp SSCEEEEEEESCBSCGGGCC-------
T ss_pred CEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988886443
No 60
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=95.32 E-value=0.025 Score=50.33 Aligned_cols=48 Identities=10% Similarity=0.220 Sum_probs=43.3
Q ss_pred HhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCC
Q 008575 343 FLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK 392 (561)
Q Consensus 343 FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~ 392 (561)
|--..+-+||..+|..||+. ++++++++.++|+++|+++|.+.|+++.
T Consensus 16 ~aLt~I~GIG~~~A~~I~~~--~gid~~~r~~~Lt~~ei~~l~~~i~~~~ 63 (114)
T 3r8n_M 16 IALTSIYGVGKTRSKAILAA--AGIAEDVKISELSEGQIDTLRDEVAKFV 63 (114)
T ss_dssp HHGGGSTTCCHHHHHHHHHH--TTCCTTCCSTTCCHHHHHHHHHHHSSSC
T ss_pred hhHhhhcCcCHHHHHHHHHH--cCcCcccCcccCCHHHHHHHHHHHHHhc
Confidence 43489999999999999999 6799999999999999999999996665
No 61
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=94.41 E-value=0.26 Score=50.57 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred ccccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 315 ETKHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 315 eikpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..-|.|.+ .+.+.+.+.++. +...+..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|++++++
T Consensus 145 ~LGPDpL~~~f~~~~~~~~l~~-~~~~IK~~LLDQ~vvaGIGNiYadEiLf~--AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 145 ELGPDALLEPMTVDEFAESLAK-KKITIKPLLLDQGYISGIGNWIADEVLYQ--ARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp GCCCBTTTSCCCHHHHHHHHHT-CCSBHHHHHHCTTTSBSCCHHHHHHHHHH--TTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred hcCCCCCCCcCCHHHHHHHHhC-CcchHHHHHhcCccccCCcHHHHHHHHHH--cCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45578877 566788887765 67899999977 6899999999999966 78999999999999999999999987
Q ss_pred C
Q 008575 391 A 391 (561)
Q Consensus 391 ~ 391 (561)
+
T Consensus 222 v 222 (310)
T 3twl_A 222 V 222 (310)
T ss_dssp H
T ss_pred H
Confidence 6
No 62
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=94.31 E-value=0.17 Score=50.92 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=64.8
Q ss_pred cccccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHH
Q 008575 314 VETKHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389 (561)
Q Consensus 314 ~eikpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~ 389 (561)
...-|.|.+ .|.+.+.+.++. +...+..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|+++++
T Consensus 131 ~~LGpdpL~~~f~~~~~~~~l~~-~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~--a~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (273)
T 3u6p_A 131 AELGPEPLSPAFSPAVLAERAVK-TKRSVKALLLDCTVVAGFGNIYVDESLFR--AGILPGRPAASLSSKEIERLHEEMV 207 (273)
T ss_dssp TTCCCCTTSTTSCHHHHHHHHHT-CCSBHHHHHHCTTTSTTCCHHHHHHHHHH--HTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred hhcCCCCCcccCCHHHHHHHHhc-CcchHHHHHhcCCccccccHHHHHHHHHH--cCCCccCccccCCHHHHHHHHHHHH
Confidence 456778886 566788888877 57899999976 5999999999999966 6899999999999999999999998
Q ss_pred hC
Q 008575 390 QA 391 (561)
Q Consensus 390 ~~ 391 (561)
++
T Consensus 208 ~v 209 (273)
T 3u6p_A 208 AT 209 (273)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 63
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=93.79 E-value=0.44 Score=47.78 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred cccccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHH
Q 008575 314 VETKHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFR 389 (561)
Q Consensus 314 ~eikpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~ 389 (561)
...-|.|.+ .+.+.+.+.++. ....+..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|+++++
T Consensus 126 ~~LGpdpL~~~f~~~~~~~~l~~-~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~--a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (268)
T 1k82_A 126 THLGPEPLSDDFNGEYLHQKCAK-KKTAIKPWLMDNKLVVGVGNIYASESLFA--AGIHPDRLASSLSLAECELLARVIK 202 (268)
T ss_dssp TTCCCCTTSTTSCHHHHHHHHTT-CCSBHHHHHTCTTTCSSCCHHHHHHHHHH--HTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred hcCCCCCCCCcCCHHHHHHHHhc-CCCcHHHHHhcCCeeeccCchHHHHHHHH--cCCCCCCCcccCCHHHHHHHHHHHH
Confidence 457788876 566788888865 56899999976 5999999999999966 6899999999999999999999999
Q ss_pred hC
Q 008575 390 QA 391 (561)
Q Consensus 390 ~~ 391 (561)
++
T Consensus 203 ~v 204 (268)
T 1k82_A 203 AV 204 (268)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 64
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=93.66 E-value=0.13 Score=51.36 Aligned_cols=76 Identities=9% Similarity=0.120 Sum_probs=64.8
Q ss_pred ccccCCcc--ccHHHHHHHHHhcC--CcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHH
Q 008575 315 ETKHHPSS--VDLLLIKGLIAETS--KGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388 (561)
Q Consensus 315 eikpHP~G--vdl~~L~~m~~~t~--~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~ 388 (561)
..-|.|.+ .+.+.+.+.++..+ ...++.+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|++++
T Consensus 124 ~lGpdpL~~~f~~~~~~~~l~~~~~~~~~Ik~~LLDQ~vvaGiGNiYadEiLf~--a~I~P~~~a~~Ls~~~~~~L~~~i 201 (262)
T 1k3x_A 124 RVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQ--VGLTGNHKAKDLNAAQLDALAHAL 201 (262)
T ss_dssp HCCCBTTCTTCCHHHHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHH--HTCCSSCCGGGSCHHHHHHHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHhcCCcccccHHHHHhcCCeeecccHHHHHHHHHH--cCCCcCCCcccCCHHHHHHHHHHH
Confidence 35577766 46678888888776 7899999987 4799999999999966 689999999999999999999999
Q ss_pred HhCC
Q 008575 389 RQAK 392 (561)
Q Consensus 389 ~~~~ 392 (561)
+++-
T Consensus 202 ~~vl 205 (262)
T 1k3x_A 202 LEIP 205 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 65
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=93.04 E-value=0.24 Score=49.76 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=63.5
Q ss_pred ccccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 315 ETKHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 315 eikpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..-|.|.+ .+.+.+.+.++. +...+..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|++++++
T Consensus 130 ~LGpdpL~~~f~~~~~~~~l~~-~~~~IK~~LLDQ~vvaGiGNiYadEiLf~--a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 130 KIGPEPTYEDFDEKLFREKLRK-STKKIKPYLLEQTLVAGLGNIYVDEVLWL--AKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp TCCCCSSTTTCCHHHHHHHHHT-CCSBHHHHHHTSSSSSCCCHHHHHHHHHH--TTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHhc-CCccHHHHHhcCCeecccChhHHHHHHHH--cCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45577766 566788888866 46899999977 5999999999999966 78999999999999999999999998
Q ss_pred C
Q 008575 391 A 391 (561)
Q Consensus 391 ~ 391 (561)
+
T Consensus 207 v 207 (271)
T 2xzf_A 207 I 207 (271)
T ss_dssp H
T ss_pred H
Confidence 6
No 66
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.01 E-value=0.18 Score=46.85 Aligned_cols=49 Identities=8% Similarity=0.259 Sum_probs=43.1
Q ss_pred chHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 339 TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 339 tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
.+.-=| ..+-+||..+|..||+. ++++++++.++||++|+++|.+.+++
T Consensus 25 ~v~~AL-t~I~GIG~~~A~~I~~~--~gid~~~r~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 25 KIMFAL-TSIKGVGRRFSNIVCKK--ADIDMNKRAGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp BHHHHH-TTSTTCCHHHHHHHHHH--HTCCSSSBTTTSCHHHHHHHHHHHHS
T ss_pred EeHhhh-hhccCcCHHHHHHHHHH--cCCCCCcEeCcCCHHHHHHHHHHHHh
Confidence 333334 78999999999999999 57999999999999999999999986
No 67
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=92.94 E-value=0.25 Score=49.53 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=64.0
Q ss_pred ccccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 315 ETKHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 315 eikpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..-|.|.+ .+.+.+.+.++. +...+..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|++++++
T Consensus 120 ~LGpdpL~~~f~~~~~~~~l~~-~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~--a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 120 RLGPEPLSEAFAFPGFFRGLKE-SARPLKALLLDQRLAAGVGNIYADEALFR--ARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp HCCCCTTSTTCCHHHHHHHHHT-CCSBHHHHHHHSSSSTTCCHHHHHHHHHH--TTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHhc-CCccHHHHHhccCccccccHhHHHHHHHH--cCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 56678876 566788888866 46899999976 5999999999999966 78999999999999999999999998
Q ss_pred C
Q 008575 391 A 391 (561)
Q Consensus 391 ~ 391 (561)
+
T Consensus 197 v 197 (266)
T 1ee8_A 197 V 197 (266)
T ss_dssp H
T ss_pred H
Confidence 5
No 68
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=92.92 E-value=0.12 Score=47.85 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=40.5
Q ss_pred cccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 346 HEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 346 ~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..+-+||..+|..||+. ++++++++.++||++|+++|.+.+.+
T Consensus 33 t~I~GIG~~~A~~I~~~--~gid~~~r~g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 33 TTIKGVGRRYSNLVCKK--ADVDLHKRAGELTQEELERIVQIMQN 75 (146)
T ss_dssp GGSTTCCHHHHHHHHHH--HTCCTTSCSSSCCHHHHHHHHHHHTC
T ss_pred hhhcCCCHHHHHHHHHH--cCCCCCceeccCCHHHHHHHHHHHHh
Confidence 77899999999999999 57999999999999999999999975
No 69
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=92.24 E-value=0.3 Score=49.77 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=62.7
Q ss_pred ccCCcc--ccHHHHHHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhC
Q 008575 317 KHHPSS--VDLLLIKGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQA 391 (561)
Q Consensus 317 kpHP~G--vdl~~L~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~ 391 (561)
.|.|.+ .|.+.+.+.++..+...|..+|.. -+++||.-.|.|+|=. +++.|..+..+|+++|+.+|+++++++
T Consensus 152 gldPL~~~Fd~~~l~~~L~~~~~~~IK~~LLDQ~viaGiGNIYa~EiLf~--AgI~P~~~~~~Ls~~~~~~L~~ai~~V 228 (287)
T 3w0f_A 152 ELDICSPKFSFSRAESEVKKQGDRMLCDVLLDQRVLPGVGNIIKNEALFD--SGLHPAVKVCQLSDKQACHLVKMTRDF 228 (287)
T ss_dssp GGCTTCTTCCHHHHHHHHHTTCSSBHHHHHHCTTTSTTCCHHHHHHHHHH--HTCCTTCBGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHhcCCcccHHHHHhcCCccccccHHHHHHHHHH--ccCCccCccccCCHHHHHHHHHHHHHH
Confidence 445554 466788888887667899999965 6999999999999966 689999999999999999999999998
No 70
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.06 E-value=0.13 Score=47.59 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=40.3
Q ss_pred cccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 346 HEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 346 ~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..+-+||..+|..||+. ++++++++.++||++|+++|.+.+++
T Consensus 26 t~I~GIG~~~A~~I~~~--~gid~~~r~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 26 TAIKGIGINFATMVCRV--AGLDPFMKAGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp HHSTTCCHHHHHHHHHH--HTCCSSSCTTBCCHHHHHHHHHHHHC
T ss_pred hhccCcCHHHHHHHHHH--hCCCCCceeccCCHHHHHHHHHHHhc
Confidence 68899999999999999 57999999999999999999999976
No 71
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=91.73 E-value=0.31 Score=45.50 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=44.4
Q ss_pred CcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 337 KGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 337 ~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
...+.--| ..+-+||..+|..||+. +|++++++.++|+++|+.+|.+.+.+
T Consensus 25 ~k~v~~aL-t~I~GIG~~~A~~I~~~--~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 25 KRITPIAL-TGIRGIGRRFAYIICKV--LKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SSCHHHHH-TTSTTCCHHHHHHHHHH--TTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred CCEEEEee-ecccccCHHHHHHHHHH--cCCCcccccccCCHHHHHHHHHHHhC
Confidence 34454444 88999999999999999 67999999999999999999999886
No 72
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=91.56 E-value=0.17 Score=45.79 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=40.5
Q ss_pred cccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 346 HEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 346 ~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..+-+||..+|..||+. +|++++++.++|+++|+.+|.+.+.+
T Consensus 20 t~I~GIG~~~A~~I~~~--~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 20 TYIYGIGKARAKEALEK--TGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp TTSSSCCSHHHHHHTTT--TTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred hccccccHHHHHHHHHH--cCCCcccccCcCCHHHHHHHHHHHHH
Confidence 78899999999999998 67999999999999999999999985
No 73
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=86.83 E-value=0.89 Score=46.27 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=57.0
Q ss_pred ccccCCc-c--ccHHHHHHHHHhcCCcchHHHhhcc---cccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHH
Q 008575 315 ETKHHPS-S--VDLLLIKGLIAETSKGTLLQFLQHE---FVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388 (561)
Q Consensus 315 eikpHP~-G--vdl~~L~~m~~~t~~~tl~~FL~~~---f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~ 388 (561)
..-|.|. + .|.+. + ......+..+|..+ +++||.-.|.|+|=. +++.|..+..+|+++|+.+|++++
T Consensus 134 ~LGPDpL~~~~f~~~~----l-~~~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~--A~I~P~~~~~~Ls~~~~~~L~~~i 206 (295)
T 3vk8_A 134 ELGPDFLKNDDIDISK----I-KKYKQPIVALLMDQKKIGSGLGNYLVAEILYR--AKIDPHKLGSNLTDQEIENLWYWI 206 (295)
T ss_dssp TSCCBTTTCSCCCGGG----G-GGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHH--TTBCTTCBGGGCCHHHHHHHHHHH
T ss_pred hcCCCCCcCCCCCHHH----H-hccCchHHHHHhcCCcccccccHHHHHHHHHH--cCCCccCccccCCHHHHHHHHHHH
Confidence 3456676 5 34444 2 24678999999874 899999999999966 789999999999999999999999
Q ss_pred HhC
Q 008575 389 RQA 391 (561)
Q Consensus 389 ~~~ 391 (561)
+++
T Consensus 207 ~~v 209 (295)
T 3vk8_A 207 KYE 209 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 74
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=83.45 E-value=1.3 Score=44.74 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=53.9
Q ss_pred CcEEEEEEcccccCcceEEEeccccC-------CCCC-----CCcccccCCccccHHHHHHHHHhcCCcchHHHhhcccc
Q 008575 282 YAQFLFKFVSEVAEKNVTIRFSRRTD-------VMPP-----VPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFV 349 (561)
Q Consensus 282 ~a~~~l~~~~~~pdg~~~~~f~R~t~-------~lP~-----~P~eikpHP~Gvdl~~L~~m~~~t~~~tl~~FL~~~f~ 349 (561)
|..+.|. |.++.+.-.+.|++. .+|. ||...+.+|..++.+.+..++... ...+...|.+.|+
T Consensus 125 ~SNiIL~----d~~~~Il~~lr~v~~~~~~~R~i~pG~~Y~~Pp~~~k~~p~~~~~e~~~~~l~~~-~~~l~~~l~~~~~ 199 (288)
T 3doa_A 125 HSNLILV----DENRKIIEGFKHLTPNTNHYRTVMPGFNYEAPPTQHKINPYDITGAEVLKYIDFN-AGNIAKQLLNQFE 199 (288)
T ss_dssp GCEEEEE----ETTCBEEEESSCBCC-----CCBSTTSBCCCCCCCCCBCGGGCCHHHHGGGCCGG-GCCHHHHHHHHBT
T ss_pred CceEEEE----cCCCcEeeeeeccCccccccceecCCCcccCCccccCCCcccCCHHHHHHHHhhC-cchHHHHHHHHcC
Confidence 4456665 566666445555532 1332 444467888888888888777543 3468999999999
Q ss_pred cCCHHHHHHH-Hhhh
Q 008575 350 NIGKSLAERL-IGEM 363 (561)
Q Consensus 350 ~v~~~~a~~i-~~~~ 363 (561)
++|+.+|+++ |..+
T Consensus 200 G~s~~la~El~~~ra 214 (288)
T 3doa_A 200 GFSPLITNEIVSRRQ 214 (288)
T ss_dssp TCCHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHc
Confidence 9999999999 9774
No 75
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=68.85 E-value=12 Score=37.25 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 325 l~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
+..+.+.+-....+||+.=|..- ..+...+.++++. .+++++++|.+|+-+|..+|.+++++
T Consensus 208 ~~~~v~~~F~~rrKtL~n~L~~~--~~~~~~~~~~l~~--~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 208 LFRLVEAAFGKRRKTLLNALAAA--GYPKARVEEALRA--LGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHTSSTTSCHHHHHHHT--TCCHHHHHHHHHH--TTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHH--CCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 45666777777888998888542 2357778888888 57999999999999999999998864
No 76
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=61.63 E-value=17 Score=37.60 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=48.7
Q ss_pred HHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCcc
Q 008575 328 IKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFD 394 (561)
Q Consensus 328 L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~ 394 (561)
++++.+....++|..+|..- +.++.+..+++. .+++ ++...+|++++..+|.+.++...|.
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~---lp~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~ 331 (401)
T 2gqf_A 271 INQAKQSSPKQMLKTILVRL---LPKKLVELWIEQ--GIVQ-DEVIANISKVRVKNLVDFIHHWEFT 331 (401)
T ss_dssp HHHHHHHCTTSBHHHHHTTT---SCHHHHHHHHHT--TSSC-CCBGGGCCHHHHHHHHHHHHCEEEC
T ss_pred HHHHhhhcccccHHHHhhhh---cCHHHHHHHHHH--cCCC-CCchhhCCHHHHHHHHHHHhcCEEE
Confidence 33333256778999999763 679999999998 4576 5778999999999999999998854
No 77
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=56.15 E-value=22 Score=37.05 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCccC
Q 008575 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKFDD 395 (561)
Q Consensus 326 ~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~~~ 395 (561)
+.|++.......+++..+|... +..+.+..+++. .++ ++++..+|+++++.+|+++|+...|..
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~---lp~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~ 351 (417)
T 3v76_A 288 SILKGMRRANGRQAVQTALADI---LPRRLAQFFADE--AKL-TGRMLADLSDKTIDALASSIQVWAVKP 351 (417)
T ss_dssp HHHHHHHHHTCSSBHHHHHTTT---SCHHHHHHHHHH--TTC-TTCBGGGCCHHHHHHHHHHHHSEEECC
T ss_pred HHHHHHHHhchhhhHHHHHHHH---hhHHHHHHHHHh--cCC-CCCchhhCCHHHHHHHHHHhcCCEEEe
Confidence 3566666777888999999754 678999999988 457 888899999999999999999998654
No 78
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=47.32 E-value=2.6 Score=38.83 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=38.9
Q ss_pred CcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHH
Q 008575 337 KGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQL 387 (561)
Q Consensus 337 ~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~ 387 (561)
.+.+.--| ..+-+||..+|..||+. .|+ ++++.++|+++|+.+|.+.
T Consensus 57 ~K~v~~aL-t~IyGIG~~~A~~I~~~--~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 57 HKRVEYSL-QYIHGIGRSRSRQILLD--LNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp SSBTTTGG-GGSTTCCSSTTTGGGTT--TTC-CSCBTTSCCSSTTHHHHSS
T ss_pred CCEEEEee-eeecCccHHHHHHHHHH--cCC-CceEcCCCCHHHHHHHHHH
Confidence 34454444 88899999999999998 568 7999999999999888765
No 79
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=45.76 E-value=17 Score=34.97 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=32.7
Q ss_pred cEEEEEecCCcchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCC-------CCcccccCCcc
Q 008575 252 AEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPP-------VPVETKHHPSS 322 (561)
Q Consensus 252 T~V~V~L~~n~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~-------~P~eikpHP~G 322 (561)
==|++.+.++..........++..-+..+|.+++++. .|.|+- +| +|- ....+|+|||+
T Consensus 116 EHIE~Vlp~~~~t~~~~~~~l~~~~~~~~~gikvK~S----~Pkge~----Er----L~NPTlA~~~~~i~IKfHP~s 181 (192)
T 1k4n_A 116 EHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTS----SPKGEH----ER----LPNPTLAVTDGKTTIKFHPWS 181 (192)
T ss_dssp EEEEEECCSCGGGHHHHHHHTSCHHHHHSTTCEEEEC---------------C----CCCCCEEEESSSCEEEEESSC
T ss_pred eEEEEEecCCcCCHHHHHHHHhhcccccCCCcEEEee----CCCccC----Cc----CCCCCEEEccCCEEEEECCcC
Confidence 3577777666533333344444445678899999987 677662 22 332 33479999994
No 80
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=45.19 E-value=4.1 Score=42.75 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=55.5
Q ss_pred cccccCCccccHHHH-----HHHHHhcCCcchHHHhhc--ccccCCHHHHHHHHhhhCCCCCCCCCcccCCHH-------
Q 008575 314 VETKHHPSSVDLLLI-----KGLIAETSKGTLLQFLQH--EFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQ------- 379 (561)
Q Consensus 314 ~eikpHP~Gvdl~~L-----~~m~~~t~~~tl~~FL~~--~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~------- 379 (561)
...-|.|.+ +.+.+ .++........|..+|.. -+++||.-.|.|+|=. +++.|.....+|+.+
T Consensus 131 ~~LGPdPL~-~~~~f~~~~~~~l~~~~~~~~IK~~LLDQ~vVAGIGNIYadEiLF~--AgIhP~r~a~~Ls~~~~~~~~~ 207 (364)
T 1tdh_A 131 PGRGPCVLQ-EYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYR--LKIPPFEKARSVLEALQQHRPS 207 (364)
T ss_dssp TTCCCCTTT-CHHHHHHHHHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHH--HTCCTTSBHHHHHGGGC-----
T ss_pred hhcCCCCCC-CHHHHHHHHHHHhhcccccccHHHHHhcCCeeeccchHHHHHHHHH--CcCCCCCChhhcCHHHhccccc
Confidence 445667765 32222 222212246799999976 5999999999999966 689999999999987
Q ss_pred -------------HHHHHHHHHHhC
Q 008575 380 -------------QIVRIHQLFRQA 391 (561)
Q Consensus 380 -------------~~~~l~~~~~~~ 391 (561)
|+.+|+++++++
T Consensus 208 ~~~~~~~k~~~~~e~~~L~~ai~~V 232 (364)
T 1tdh_A 208 PELTLSQKIRTKLQNPDLLELCHSV 232 (364)
T ss_dssp CCSCHHHHHHHTTTSCCHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHH
Confidence 888888888875
No 81
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=43.45 E-value=51 Score=32.04 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 008575 325 LLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 325 l~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~ 390 (561)
+..+.+.+-....+||+.=|..-+. .++++. .|++++.+|.+|+-+|..+|.+++.+
T Consensus 194 ~~~~v~~~F~~rrK~l~n~l~~~~~-------~~~l~~--~~i~~~~R~e~Ls~~~f~~l~~~~~~ 250 (252)
T 1qyr_A 194 LSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTG--MGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp HHHHHHHHHHTTTSBHHHHTTTTCC-------HHHHHH--TTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHhhhhh-------HHHHHH--cCCCCCCChHHCCHHHHHHHHHHHHh
Confidence 3556666677788899988865442 456666 57999999999999999999998854
No 82
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=41.95 E-value=31 Score=35.91 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=7.8
Q ss_pred CCeeEEEEEeCC
Q 008575 149 ASFYRVTCKDNG 160 (561)
Q Consensus 149 ~~~~~I~V~DNG 160 (561)
.+.+.|++.++|
T Consensus 51 a~~I~V~i~~~g 62 (369)
T 3cwv_A 51 CRDVVLEVGGDG 62 (369)
T ss_dssp CSEEEEEECTTS
T ss_pred CCEEEEEEeCCC
Confidence 456777777655
No 83
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=36.18 E-value=23 Score=37.69 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=49.9
Q ss_pred EEEEEeeecCccCCCCceEEEeeccccccccCCC------chhhhhhhcccCccccccCCCC----CceEEEEEeeeCCC
Q 008575 438 IVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGG------DVVTRTAMKRINWSSYKINQTQ----DKIGVFVSIVSTKI 507 (561)
Q Consensus 438 iVEa~iayGg~~~~~~~~i~RfANriPLlf~~g~------~~it~~~~~~i~W~~Y~i~~~~----~~~~v~vhi~St~v 507 (561)
-||+|++|-- . ..+++=|+|-||. -+.|. .++|+ ++...--+..+++..+ .-+..+||+-.++-
T Consensus 292 ~vevA~~~~~---~-~~~~~SFvN~I~T-~~GGTH~~g~~~al~~-~i~~~~~k~~~~~l~g~Dvregl~aviSvkv~~P 365 (418)
T 1pvg_A 292 RWEVAFAVSD---I-SFQQISFVNSIAT-TMGGTHVNYITDQIVK-KISEILKKKKKKSVKSFQIKNNMFIFINCLIENP 365 (418)
T ss_dssp TEEEEEEECS---S-SCEEEEEETTEEC-TTCBHHHHHHHHHHHH-HHHHHHCC-----CCHHHHHTTEEEEEEECCSSC
T ss_pred eEEEEEEEcC---C-CceEEEEeCceeC-CCCCcHHHHHHHHHHH-HHHHHHHhcccCCCCHHHHhhCeEEEEEEecCCC
Confidence 4899999952 1 2479999999999 66663 46666 5443211222222221 34788888888888
Q ss_pred CCCCCcccccCC
Q 008575 508 PFKGTGKEYIGD 519 (561)
Q Consensus 508 Pf~~~~Ke~ia~ 519 (561)
-|.|-.|+.+..
T Consensus 366 qFegQTK~kL~~ 377 (418)
T 1pvg_A 366 AFTSQTKEQLTT 377 (418)
T ss_dssp CBSSTTCCSBCC
T ss_pred cccCccchhhcC
Confidence 899999999983
No 84
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=33.63 E-value=36 Score=33.72 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCC
Q 008575 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK 392 (561)
Q Consensus 326 ~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~ 392 (561)
..+.+.+-....+||+.=|..-+. .++++. .+++++++|.+|+-+|..+|.+++.+.+
T Consensus 219 ~~~v~~~F~~rrK~l~n~L~~~~~-------~~~l~~--~~i~~~~R~e~Ls~~~f~~L~~~~~~~~ 276 (279)
T 3uzu_A 219 GEVVTAAFSQRRKMLRNTLGGYRD-------LVDFDA--LGFDLARRAEDIGVDEYVRVAQAVASAR 276 (279)
T ss_dssp HHHHHHHGGGTTSBHHHHTGGGTT-------TCCTTT--TTCCTTSBGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccChHHHHHHHhhcC-------HHHHHH--CCcCCCCCceeCCHHHHHHHHHHHHHhh
Confidence 445555566777888887765432 234554 5799999999999999999999997754
No 85
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=31.79 E-value=93 Score=32.13 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=46.0
Q ss_pred HhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCCc
Q 008575 333 AETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAKF 393 (561)
Q Consensus 333 ~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~~ 393 (561)
......+|..+|.. .+..++++.+++. .+++++++..++++++..+|.+.++.+.|
T Consensus 316 ~~~~~~~l~~~l~~---~~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 371 (447)
T 2i0z_A 316 KEDPKKGIKNVLKG---YVPERYFLFLLEK--NEIDGSEQAGQVSHEKIRALVKDFKEFTV 371 (447)
T ss_dssp TTSTTSBHHHHTTT---SSCHHHHHHHHHH--TTCCTTSBGGGSCHHHHHHHHHHHHHEEE
T ss_pred HhChhhhHHHhccc---cChHHHHHHHHHH--cCCCcCCchhhCCHHHHHHHHHHhhCCEE
Confidence 44567789999854 3578899999988 46998888899999999999999998875
No 86
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=26.55 E-value=64 Score=32.31 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCcchHHHhhccccc--CCHHHHHHHHhhh---CCCCCC--CCCcccCCHHHHHHHHHHHHh
Q 008575 326 LLIKGLIAETSKGTLLQFLQHEFVN--IGKSLAERLIGEM---GPEFSP--KMAVKSLTSQQIVRIHQLFRQ 390 (561)
Q Consensus 326 ~~L~~m~~~t~~~tl~~FL~~~f~~--v~~~~a~~i~~~~---~~~~~~--~~~p~~l~~~~~~~l~~~~~~ 390 (561)
..+.+.+-....+||+.=|..-+.. +++..++++++.+ |.++++ +++|.+|+-+|..+|.+++.+
T Consensus 216 ~~~v~~~F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 216 DDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHHTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 4555566667788999988765543 5677888888874 114677 899999999999999988853
No 87
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.30 E-value=93 Score=30.26 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCcchHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHH
Q 008575 326 LLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLF 388 (561)
Q Consensus 326 ~~L~~m~~~t~~~tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~ 388 (561)
..+.+.+-....+||+.=|..-|. . +.++. .+++++++|.+|+-+|..+|.+++
T Consensus 201 ~~~v~~~F~~rrK~l~~~L~~~~~---~----~~l~~--~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 201 SHVVKEAFSYRRKTVGNALKKLIN---P----SQWPL--LEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHHHHHHHSTTSCHHHHTTTTCC---G----GGTGG--GTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHhhhCC---H----HHHHH--CCcCCCCCceeCCHHHHHHHHHHh
Confidence 445555566777888888765442 1 34555 579999999999999999998875
No 88
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A
Probab=20.20 E-value=48 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCceEEEeeccccc---------cccCCCchhhhhhhccc
Q 008575 452 QGLNIFRFANRIPL---------LFEQGGDVVTRTAMKRI 482 (561)
Q Consensus 452 ~~~~i~RfANriPL---------lf~~g~~~it~~~~~~i 482 (561)
.+-.++-|++|+|| ||..++|.+|- .+++|
T Consensus 104 Ng~h~~~F~HRl~L~ppie~v~yl~~d~g~~~~~-~l~~~ 142 (146)
T 4agr_A 104 NGIEIVKYPYRDGLPPPVTKFQYVFQDQGASETA-QLESL 142 (146)
T ss_dssp TTEEEEEEECBTTBCCCEEEEEEEEECSSCSSCC-EEEEE
T ss_pred CCeEEEEecCCCCCCCccEEEEEEEeCCCcceee-EeeEE
Confidence 35589999999998 77777777776 66665
Done!