Query 008576
Match_columns 561
No_of_seqs 562 out of 4043
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 13:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 3E-102 7E-107 864.8 60.5 539 1-549 174-736 (737)
2 TIGR02437 FadB fatty oxidation 100.0 5E-100 1E-104 845.5 61.0 536 1-549 166-713 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 1.8E-98 4E-103 833.7 59.2 532 1-549 162-698 (699)
4 PRK11730 fadB multifunctional 100.0 8.1E-98 2E-102 830.3 60.7 535 1-548 166-712 (715)
5 PRK11154 fadJ multifunctional 100.0 7.2E-98 2E-102 831.0 59.0 532 1-549 167-705 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 3.4E-77 7.3E-82 637.8 45.2 400 146-549 4-501 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.7E-75 5.8E-80 625.3 46.1 401 145-549 5-502 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.6E-67 7.9E-72 517.8 30.9 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 4E-66 8.6E-71 470.0 19.4 280 145-424 9-298 (298)
10 KOG1683 Hydroxyacyl-CoA dehydr 100.0 4.6E-63 9.9E-68 484.1 17.9 376 158-549 1-378 (380)
11 PRK07819 3-hydroxybutyryl-CoA 100.0 4.3E-61 9.3E-66 482.0 31.8 279 145-423 3-286 (286)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 3.5E-57 7.5E-62 456.1 32.0 279 146-424 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 3.1E-56 6.8E-61 449.6 33.1 281 147-427 1-284 (288)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 4.7E-56 1E-60 448.9 32.0 278 146-423 2-290 (291)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 5.2E-56 1.1E-60 446.8 31.5 278 146-423 2-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 3.3E-55 7.2E-60 443.9 33.1 282 146-427 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 4.2E-55 9E-60 442.5 32.8 282 145-426 2-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 1E-53 2.2E-58 432.7 31.0 268 158-425 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 4.5E-54 9.8E-59 433.0 25.6 277 145-425 5-298 (321)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 2.1E-46 4.5E-51 382.7 30.9 277 146-427 3-286 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.1E-39 2.5E-44 331.8 29.9 262 147-408 2-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.7E-38 3.7E-43 296.5 20.8 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 4.9E-36 1.1E-40 322.9 27.0 243 147-393 4-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 1E-34 2.2E-39 265.0 14.9 233 146-378 2-242 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 99.9 2.4E-27 5.2E-32 254.9 17.8 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1.9E-25 4E-30 187.6 8.9 94 330-423 1-97 (97)
27 PF00725 3HCDH: 3-hydroxyacyl- 99.9 3.9E-24 8.4E-29 179.5 9.3 95 461-559 2-97 (97)
28 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 6.4E-21 1.4E-25 204.6 27.5 118 293-410 378-498 (503)
29 KOG2304 3-hydroxyacyl-CoA dehy 99.9 1.9E-22 4.2E-27 184.7 10.0 99 458-560 198-298 (298)
30 PRK09260 3-hydroxybutyryl-CoA 99.8 1.8E-20 3.9E-25 189.2 12.1 99 459-561 184-282 (288)
31 PRK07819 3-hydroxybutyryl-CoA 99.8 3.5E-20 7.5E-25 186.1 11.8 97 459-559 189-286 (286)
32 PRK05808 3-hydroxybutyryl-CoA 99.8 4.5E-20 9.8E-25 185.8 11.5 98 458-559 184-282 (282)
33 PLN02545 3-hydroxybutyryl-CoA 99.8 2.2E-19 4.7E-24 182.0 12.1 99 459-561 186-285 (295)
34 PRK08293 3-hydroxybutyryl-CoA 99.8 2.3E-19 5.1E-24 180.9 11.6 99 458-560 187-287 (287)
35 COG1250 FadB 3-hydroxyacyl-CoA 99.8 2E-19 4.3E-24 178.5 10.6 99 458-560 184-284 (307)
36 PRK06035 3-hydroxyacyl-CoA deh 99.8 8.8E-19 1.9E-23 177.2 10.9 97 459-559 188-290 (291)
37 PRK07530 3-hydroxybutyryl-CoA 99.8 1.2E-18 2.6E-23 176.3 11.9 97 460-560 187-284 (292)
38 PRK08269 3-hydroxybutyryl-CoA 99.8 1.6E-18 3.5E-23 175.9 11.7 100 460-560 183-283 (314)
39 COG2084 MmsB 3-hydroxyisobutyr 99.7 9.8E-17 2.1E-21 157.8 18.4 186 148-362 1-207 (286)
40 TIGR02440 FadJ fatty oxidation 99.7 2.8E-17 6.2E-22 183.8 11.9 97 458-560 486-582 (699)
41 PRK11154 fadJ multifunctional 99.7 3.8E-17 8.3E-22 183.2 11.9 97 458-560 491-587 (708)
42 PRK06130 3-hydroxybutyryl-CoA 99.7 4.7E-17 1E-21 166.3 11.4 100 460-560 184-283 (311)
43 PRK07417 arogenate dehydrogena 99.7 1.9E-15 4E-20 151.9 22.1 155 148-327 1-167 (279)
44 TIGR01505 tartro_sem_red 2-hyd 99.7 3E-16 6.6E-21 158.7 16.4 187 149-365 1-209 (291)
45 TIGR02441 fa_ox_alpha_mit fatt 99.7 1.4E-16 3.1E-21 178.5 11.3 97 458-560 516-614 (737)
46 PRK11559 garR tartronate semia 99.7 2.4E-15 5.1E-20 152.7 18.3 188 147-365 2-212 (296)
47 PRK11730 fadB multifunctional 99.7 2E-16 4.3E-21 177.5 11.4 98 458-560 494-593 (715)
48 TIGR02437 FadB fatty oxidation 99.7 2.5E-16 5.3E-21 176.3 11.2 98 458-560 494-593 (714)
49 PRK11199 tyrA bifunctional cho 99.6 2.6E-14 5.6E-19 148.9 17.4 171 146-357 97-277 (374)
50 PLN02688 pyrroline-5-carboxyla 99.6 1.3E-13 2.8E-18 137.7 19.9 186 148-362 1-202 (266)
51 PRK11880 pyrroline-5-carboxyla 99.5 9.3E-13 2E-17 131.6 20.3 189 147-362 2-203 (267)
52 KOG0409 Predicted dehydrogenas 99.5 5.4E-13 1.2E-17 128.9 17.5 189 145-362 33-242 (327)
53 PRK07679 pyrroline-5-carboxyla 99.5 5.8E-13 1.3E-17 133.9 18.7 190 146-362 2-207 (279)
54 PRK15461 NADH-dependent gamma- 99.5 6E-13 1.3E-17 134.7 18.3 183 148-362 2-207 (296)
55 PRK12491 pyrroline-5-carboxyla 99.5 9.7E-13 2.1E-17 131.2 19.3 189 148-362 3-205 (272)
56 PRK06545 prephenate dehydrogen 99.5 3.4E-13 7.4E-18 140.2 15.8 221 148-392 1-249 (359)
57 PRK08507 prephenate dehydrogen 99.5 1E-12 2.3E-17 131.8 18.4 152 149-327 2-168 (275)
58 PF03446 NAD_binding_2: NAD bi 99.5 1.7E-13 3.8E-18 126.2 10.7 145 147-324 1-159 (163)
59 COG0287 TyrA Prephenate dehydr 99.5 2.3E-12 5.1E-17 127.8 18.5 156 147-326 3-170 (279)
60 PRK08655 prephenate dehydrogen 99.5 2.2E-12 4.7E-17 137.1 18.8 154 148-326 1-162 (437)
61 TIGR01692 HIBADH 3-hydroxyisob 99.5 1.6E-12 3.5E-17 131.2 16.4 181 152-365 1-206 (288)
62 PLN02350 phosphogluconate dehy 99.4 3.9E-12 8.5E-17 135.5 18.6 191 146-362 5-225 (493)
63 PRK15059 tartronate semialdehy 99.4 3.2E-12 7E-17 128.9 17.1 185 149-362 2-205 (292)
64 PTZ00142 6-phosphogluconate de 99.4 4.3E-12 9.3E-17 135.1 17.9 188 148-362 2-219 (470)
65 PRK07502 cyclohexadienyl dehyd 99.4 4E-12 8.7E-17 129.6 16.6 157 146-326 5-178 (307)
66 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.5E-11 3.1E-16 124.8 20.1 189 148-362 1-209 (298)
67 TIGR03026 NDP-sugDHase nucleot 99.4 5E-12 1.1E-16 134.1 17.0 199 148-362 1-244 (411)
68 PRK11064 wecC UDP-N-acetyl-D-m 99.4 1.2E-11 2.5E-16 130.9 19.5 199 146-362 2-248 (415)
69 PLN02256 arogenate dehydrogena 99.4 7.1E-12 1.5E-16 126.6 15.9 153 147-326 36-203 (304)
70 PRK12490 6-phosphogluconate de 99.4 2.5E-11 5.5E-16 123.1 17.9 182 149-362 2-210 (299)
71 PRK12557 H(2)-dependent methyl 99.4 6E-11 1.3E-15 121.6 20.6 205 159-386 32-260 (342)
72 PRK09599 6-phosphogluconate de 99.4 4.8E-11 1E-15 121.3 19.3 182 149-362 2-211 (301)
73 PLN02600 enoyl-CoA hydratase 99.3 3E-12 6.4E-17 126.5 9.3 97 1-133 152-248 (251)
74 COG0345 ProC Pyrroline-5-carbo 99.3 1.6E-11 3.5E-16 120.0 14.3 151 147-324 1-157 (266)
75 PRK08150 enoyl-CoA hydratase; 99.3 3.2E-12 7E-17 126.5 9.5 98 1-134 156-253 (255)
76 PRK12478 enoyl-CoA hydratase; 99.3 2.2E-12 4.8E-17 130.3 8.2 98 1-134 173-279 (298)
77 PLN02888 enoyl-CoA hydratase 99.3 3.6E-12 7.9E-17 126.8 9.4 99 1-135 163-263 (265)
78 PRK05862 enoyl-CoA hydratase; 99.3 3.7E-12 8.1E-17 126.3 9.1 97 1-133 158-254 (257)
79 PRK15057 UDP-glucose 6-dehydro 99.3 1E-11 2.2E-16 129.8 12.6 193 149-362 2-233 (388)
80 PRK06928 pyrroline-5-carboxyla 99.3 2.4E-11 5.2E-16 121.8 14.5 153 147-324 1-160 (277)
81 KOG1680 Enoyl-CoA hydratase [L 99.3 2.9E-12 6.4E-17 122.1 7.4 97 1-133 191-287 (290)
82 cd05297 GH4_alpha_glucosidase_ 99.3 3.7E-13 7.9E-18 142.5 1.1 158 148-321 1-184 (423)
83 TIGR02280 PaaB1 phenylacetate 99.3 5.2E-12 1.1E-16 125.2 9.3 97 1-133 157-253 (256)
84 PRK07938 enoyl-CoA hydratase; 99.3 3.5E-12 7.6E-17 125.8 7.8 95 1-131 155-249 (249)
85 PRK07658 enoyl-CoA hydratase; 99.3 6.1E-12 1.3E-16 124.9 9.6 97 1-133 158-254 (257)
86 PRK07680 late competence prote 99.3 1.1E-10 2.4E-15 117.0 18.8 151 149-326 2-158 (273)
87 PRK05980 enoyl-CoA hydratase; 99.3 4.8E-12 1E-16 125.8 8.7 96 1-132 164-259 (260)
88 PRK08258 enoyl-CoA hydratase; 99.3 5.5E-12 1.2E-16 126.4 9.1 97 1-133 178-274 (277)
89 PRK08139 enoyl-CoA hydratase; 99.3 5.8E-12 1.2E-16 125.5 9.1 97 1-133 167-263 (266)
90 PRK08138 enoyl-CoA hydratase; 99.3 7.3E-12 1.6E-16 124.5 9.8 97 1-133 162-258 (261)
91 PLN02858 fructose-bisphosphate 99.3 6.2E-11 1.3E-15 140.9 19.3 187 147-365 4-217 (1378)
92 PRK07799 enoyl-CoA hydratase; 99.3 9.4E-12 2E-16 123.9 9.5 97 1-133 164-260 (263)
93 PRK08140 enoyl-CoA hydratase; 99.3 9.1E-12 2E-16 124.0 9.3 97 1-133 163-259 (262)
94 PRK05809 3-hydroxybutyryl-CoA 99.3 9.5E-12 2.1E-16 123.7 9.2 97 1-133 161-257 (260)
95 PRK08818 prephenate dehydrogen 99.3 3.7E-11 8.1E-16 123.7 13.5 137 148-326 5-154 (370)
96 PRK06495 enoyl-CoA hydratase; 99.3 1.1E-11 2.3E-16 123.1 9.2 97 1-133 158-254 (257)
97 PRK09076 enoyl-CoA hydratase; 99.3 1.2E-11 2.6E-16 122.8 9.5 97 1-133 159-255 (258)
98 PRK06563 enoyl-CoA hydratase; 99.3 1.1E-11 2.3E-16 122.9 9.0 97 1-133 156-252 (255)
99 PRK06127 enoyl-CoA hydratase; 99.3 1.2E-11 2.6E-16 123.4 9.4 97 1-133 170-266 (269)
100 PRK08252 enoyl-CoA hydratase; 99.3 1.4E-11 3.1E-16 122.0 9.4 97 1-133 155-251 (254)
101 PRK09674 enoyl-CoA hydratase-i 99.3 1.5E-11 3.3E-16 121.8 9.5 97 1-133 156-252 (255)
102 PRK06143 enoyl-CoA hydratase; 99.3 1.2E-11 2.6E-16 122.5 8.7 94 1-130 163-256 (256)
103 PRK00094 gpsA NAD(P)H-dependen 99.3 1.8E-10 4E-15 118.4 17.8 166 147-329 1-181 (325)
104 PLN02858 fructose-bisphosphate 99.3 1.2E-10 2.6E-15 138.4 18.5 190 146-365 323-537 (1378)
105 PRK05981 enoyl-CoA hydratase; 99.3 1.6E-11 3.6E-16 122.4 9.3 97 1-133 167-263 (266)
106 PLN03214 probable enoyl-CoA hy 99.3 1.1E-11 2.4E-16 124.1 8.0 99 1-135 172-270 (278)
107 PRK07657 enoyl-CoA hydratase; 99.3 1.8E-11 4E-16 121.6 9.4 97 1-133 161-257 (260)
108 PRK07468 enoyl-CoA hydratase; 99.2 1.7E-11 3.7E-16 121.9 9.1 97 1-133 163-259 (262)
109 PRK05995 enoyl-CoA hydratase; 99.2 1.7E-11 3.8E-16 122.0 9.1 97 1-133 162-259 (262)
110 PRK14806 bifunctional cyclohex 99.2 3.7E-10 8E-15 128.9 21.2 156 147-326 3-176 (735)
111 PLN02664 enoyl-CoA hydratase/d 99.2 1.8E-11 4E-16 122.5 9.3 97 1-133 175-272 (275)
112 PRK09245 enoyl-CoA hydratase; 99.2 1.9E-11 4.2E-16 121.9 9.4 97 1-133 167-263 (266)
113 PRK06494 enoyl-CoA hydratase; 99.2 1.8E-11 3.9E-16 121.6 8.9 97 1-133 158-256 (259)
114 PRK15182 Vi polysaccharide bio 99.2 1.7E-10 3.7E-15 122.0 16.4 198 148-362 7-244 (425)
115 TIGR00873 gnd 6-phosphoglucona 99.2 1.6E-10 3.5E-15 123.2 16.3 186 149-362 1-216 (467)
116 PRK05479 ketol-acid reductoiso 99.2 2.3E-10 5E-15 115.7 16.5 151 147-323 17-177 (330)
117 PRK06142 enoyl-CoA hydratase; 99.2 2.1E-11 4.6E-16 122.0 8.8 97 1-133 173-270 (272)
118 PRK06476 pyrroline-5-carboxyla 99.2 4.7E-10 1E-14 111.5 18.3 181 149-362 2-194 (258)
119 PRK06210 enoyl-CoA hydratase; 99.2 2.4E-11 5.3E-16 121.6 9.0 98 1-133 172-269 (272)
120 PRK07511 enoyl-CoA hydratase; 99.2 2.4E-11 5.1E-16 120.9 8.8 96 1-132 162-257 (260)
121 PRK07634 pyrroline-5-carboxyla 99.2 5.5E-10 1.2E-14 110.1 18.2 152 147-324 4-162 (245)
122 PRK08184 benzoyl-CoA-dihydrodi 99.2 1.3E-11 2.9E-16 133.4 6.9 97 2-134 446-546 (550)
123 TIGR03222 benzo_boxC benzoyl-C 99.2 1.3E-11 2.9E-16 132.9 6.8 97 1-133 441-541 (546)
124 PRK03580 carnitinyl-CoA dehydr 99.2 3.3E-11 7.1E-16 119.8 8.6 97 1-133 158-258 (261)
125 COG0240 GpsA Glycerol-3-phosph 99.2 4.9E-11 1.1E-15 118.7 9.8 167 147-330 1-181 (329)
126 PRK06688 enoyl-CoA hydratase; 99.2 4E-11 8.7E-16 119.2 9.1 97 1-133 160-256 (259)
127 PRK07659 enoyl-CoA hydratase; 99.2 3.2E-11 6.9E-16 119.9 8.3 96 1-133 162-257 (260)
128 TIGR00465 ilvC ketol-acid redu 99.2 2.2E-10 4.7E-15 116.1 14.2 202 148-380 4-231 (314)
129 COG0677 WecC UDP-N-acetyl-D-ma 99.2 1.5E-09 3.3E-14 109.1 19.7 199 148-362 10-251 (436)
130 PRK05674 gamma-carboxygeranoyl 99.2 3.8E-11 8.2E-16 119.6 8.0 97 1-133 164-261 (265)
131 PRK07066 3-hydroxybutyryl-CoA 99.2 3.2E-11 6.9E-16 122.3 7.2 101 458-559 186-296 (321)
132 COG1004 Ugd Predicted UDP-gluc 99.2 6.6E-10 1.4E-14 112.2 16.5 199 148-361 1-241 (414)
133 PRK08259 enoyl-CoA hydratase; 99.2 5.4E-11 1.2E-15 117.7 8.6 93 1-130 157-249 (254)
134 PRK07260 enoyl-CoA hydratase; 99.2 5.7E-11 1.2E-15 117.7 8.7 94 1-130 162-255 (255)
135 TIGR01929 menB naphthoate synt 99.2 3.9E-11 8.5E-16 119.1 7.5 96 1-133 161-256 (259)
136 PRK07396 dihydroxynaphthoic ac 99.2 6.2E-11 1.4E-15 118.5 8.8 97 1-134 171-267 (273)
137 PRK05864 enoyl-CoA hydratase; 99.2 8.2E-11 1.8E-15 117.9 9.1 97 1-133 174-272 (276)
138 PRK11423 methylmalonyl-CoA dec 99.2 7.4E-11 1.6E-15 117.2 8.5 97 1-133 160-258 (261)
139 PRK09120 p-hydroxycinnamoyl Co 99.2 8.7E-11 1.9E-15 117.6 8.7 94 1-130 168-264 (275)
140 PTZ00082 L-lactate dehydrogena 99.2 6.7E-11 1.4E-15 120.6 8.0 126 147-284 6-153 (321)
141 PF01210 NAD_Gly3P_dh_N: NAD-d 99.2 5.5E-11 1.2E-15 108.8 6.7 105 149-265 1-106 (157)
142 PLN02921 naphthoate synthase 99.1 9.2E-11 2E-15 119.6 8.7 97 1-134 225-321 (327)
143 TIGR01915 npdG NADPH-dependent 99.1 1.8E-09 3.9E-14 104.5 17.2 163 148-327 1-189 (219)
144 PRK14618 NAD(P)H-dependent gly 99.1 4.3E-10 9.4E-15 115.8 13.1 163 147-328 4-179 (328)
145 TIGR03210 badI 2-ketocyclohexa 99.1 1.2E-10 2.6E-15 115.4 8.2 96 1-133 158-253 (256)
146 PF02153 PDH: Prephenate dehyd 99.1 8.5E-10 1.8E-14 109.4 14.2 141 162-326 1-157 (258)
147 PLN02712 arogenate dehydrogena 99.1 8.8E-10 1.9E-14 122.6 15.5 154 146-326 368-536 (667)
148 PRK08321 naphthoate synthase; 99.1 1.5E-10 3.2E-15 117.4 8.5 96 1-133 200-295 (302)
149 PTZ00431 pyrroline carboxylate 99.1 8.1E-10 1.8E-14 109.8 13.0 145 148-324 4-153 (260)
150 PRK06144 enoyl-CoA hydratase; 99.1 1.9E-10 4.1E-15 114.4 8.4 93 1-133 167-259 (262)
151 cd01339 LDH-like_MDH L-lactate 99.1 1.8E-10 3.9E-15 117.0 7.4 122 150-283 1-139 (300)
152 PRK14619 NAD(P)H-dependent gly 99.1 5.9E-10 1.3E-14 113.7 10.8 139 148-330 5-158 (308)
153 PRK08260 enoyl-CoA hydratase; 99.1 4.1E-10 8.8E-15 114.0 9.2 100 1-135 177-277 (296)
154 PRK06023 enoyl-CoA hydratase; 99.1 3E-10 6.4E-15 112.3 7.8 91 1-128 161-251 (251)
155 PTZ00117 malate dehydrogenase; 99.1 4.1E-10 8.8E-15 115.0 8.9 125 148-284 6-147 (319)
156 PRK08229 2-dehydropantoate 2-r 99.1 2.1E-09 4.5E-14 111.5 14.2 166 147-329 2-179 (341)
157 PRK07509 enoyl-CoA hydratase; 99.1 4.4E-10 9.6E-15 111.9 8.8 95 1-133 166-260 (262)
158 PRK06072 enoyl-CoA hydratase; 99.1 5E-10 1.1E-14 110.4 9.0 94 1-133 152-245 (248)
159 TIGR03189 dienoyl_CoA_hyt cycl 99.0 6.5E-10 1.4E-14 109.7 9.5 95 1-133 152-248 (251)
160 PLN02712 arogenate dehydrogena 99.0 6.3E-09 1.4E-13 115.8 18.0 153 147-326 52-219 (667)
161 PRK05870 enoyl-CoA hydratase; 99.0 3.1E-10 6.8E-15 112.0 6.9 90 1-128 159-249 (249)
162 PRK06223 malate dehydrogenase; 99.0 5.4E-10 1.2E-14 114.0 8.5 125 147-283 2-143 (307)
163 PF00378 ECH: Enoyl-CoA hydrat 99.0 2.9E-10 6.2E-15 112.1 6.3 92 1-128 154-245 (245)
164 PRK07327 enoyl-CoA hydratase; 99.0 5.8E-10 1.3E-14 111.3 8.2 93 1-133 170-265 (268)
165 PRK07112 polyketide biosynthes 99.0 7.7E-10 1.7E-14 109.6 8.2 94 1-133 159-252 (255)
166 PLN02353 probable UDP-glucose 99.0 1.9E-08 4.1E-13 107.5 19.0 203 147-362 1-252 (473)
167 PRK07827 enoyl-CoA hydratase; 99.0 9.8E-10 2.1E-14 109.2 8.4 94 1-132 164-257 (260)
168 COG2085 Predicted dinucleotide 99.0 1.9E-08 4.1E-13 93.9 16.2 154 147-327 1-180 (211)
169 TIGR01724 hmd_rel H2-forming N 99.0 6.6E-08 1.4E-12 95.7 20.8 147 159-326 32-193 (341)
170 PRK05617 3-hydroxyisobutyryl-C 99.0 5.6E-10 1.2E-14 114.9 6.7 132 1-133 163-323 (342)
171 PRK07854 enoyl-CoA hydratase; 99.0 1.3E-09 2.8E-14 107.1 8.8 91 1-133 150-240 (243)
172 PRK12439 NAD(P)H-dependent gly 99.0 1.1E-08 2.4E-13 105.7 15.4 175 145-333 5-190 (341)
173 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 2.3E-09 4.9E-14 100.6 9.4 108 148-268 1-125 (185)
174 PF03807 F420_oxidored: NADP o 98.9 2.2E-09 4.7E-14 89.6 7.1 91 149-263 1-95 (96)
175 PRK07110 polyketide biosynthes 98.9 3.1E-09 6.7E-14 104.9 8.5 89 1-125 158-246 (249)
176 PRK09287 6-phosphogluconate de 98.9 3.3E-08 7.2E-13 105.1 15.9 177 158-362 1-208 (459)
177 PF10727 Rossmann-like: Rossma 98.9 6.3E-09 1.4E-13 90.7 8.5 115 147-285 10-127 (127)
178 PLN02874 3-hydroxyisobutyryl-C 98.9 2.6E-09 5.6E-14 111.4 6.2 132 1-133 168-336 (379)
179 PTZ00345 glycerol-3-phosphate 98.8 1.5E-08 3.3E-13 104.6 11.2 173 148-330 12-206 (365)
180 TIGR03376 glycerol3P_DH glycer 98.8 2.9E-08 6.2E-13 101.8 12.1 108 149-268 1-122 (342)
181 PRK06190 enoyl-CoA hydratase; 98.8 1E-08 2.2E-13 101.6 8.5 92 1-128 158-252 (258)
182 KOG1679 Enoyl-CoA hydratase [L 98.8 3.4E-09 7.4E-14 97.0 4.6 97 1-133 188-288 (291)
183 TIGR01763 MalateDH_bact malate 98.8 7.2E-09 1.6E-13 105.1 7.4 123 148-283 2-142 (305)
184 COG1024 CaiD Enoyl-CoA hydrata 98.8 1.3E-08 2.8E-13 101.1 9.1 93 1-131 162-255 (257)
185 COG0447 MenB Dihydroxynaphthoi 98.8 2.7E-09 5.8E-14 97.8 3.4 92 2-133 181-275 (282)
186 COG1023 Gnd Predicted 6-phosph 98.8 5.5E-07 1.2E-11 84.6 17.3 189 148-362 1-210 (300)
187 PRK14620 NAD(P)H-dependent gly 98.8 1.6E-07 3.4E-12 96.7 15.3 104 149-265 2-109 (326)
188 PRK06522 2-dehydropantoate 2-r 98.7 1.5E-07 3.2E-12 95.9 14.1 112 148-275 1-114 (304)
189 KOG1683 Hydroxyacyl-CoA dehydr 98.7 9.4E-09 2E-13 102.4 3.0 92 458-560 171-263 (380)
190 PRK06444 prephenate dehydrogen 98.7 4.1E-07 9E-12 85.8 13.7 114 148-326 1-120 (197)
191 PRK12921 2-dehydropantoate 2-r 98.6 2.6E-07 5.6E-12 94.2 12.7 165 148-327 1-177 (305)
192 PRK06249 2-dehydropantoate 2-r 98.6 3.9E-07 8.4E-12 93.3 13.3 170 146-331 4-190 (313)
193 KOG1682 Enoyl-CoA isomerase [L 98.6 5E-08 1.1E-12 88.7 5.4 96 1-132 188-283 (287)
194 cd00650 LDH_MDH_like NAD-depen 98.6 9.9E-08 2.1E-12 95.1 7.6 96 150-259 1-116 (263)
195 PRK08290 enoyl-CoA hydratase; 98.5 1.1E-07 2.5E-12 95.7 6.3 81 1-117 180-262 (288)
196 TIGR02354 thiF_fam2 thiamine b 98.5 2.2E-07 4.9E-12 88.2 7.1 105 147-259 21-142 (200)
197 COG0362 Gnd 6-phosphogluconate 98.5 8.4E-06 1.8E-10 82.2 18.1 189 147-363 3-221 (473)
198 PRK12480 D-lactate dehydrogena 98.5 4.7E-07 1E-11 92.9 9.4 100 148-275 147-249 (330)
199 PF00056 Ldh_1_N: lactate/mala 98.5 8.2E-07 1.8E-11 79.6 9.6 100 148-261 1-117 (141)
200 PRK06129 3-hydroxyacyl-CoA deh 98.5 7.5E-07 1.6E-11 90.9 10.5 84 460-544 187-274 (308)
201 TIGR00112 proC pyrroline-5-car 98.5 3.9E-06 8.5E-11 82.6 15.2 167 170-362 9-185 (245)
202 PRK06213 enoyl-CoA hydratase; 98.5 1.2E-07 2.6E-12 92.4 4.3 73 1-109 156-228 (229)
203 PRK08788 enoyl-CoA hydratase; 98.5 6E-07 1.3E-11 90.0 9.0 90 1-127 185-275 (287)
204 PLN02157 3-hydroxyisobutyryl-C 98.4 3.3E-07 7.2E-12 95.7 6.4 88 1-126 196-283 (401)
205 COG4007 Predicted dehydrogenas 98.4 8.2E-06 1.8E-10 77.4 14.4 147 159-326 33-194 (340)
206 cd05291 HicDH_like L-2-hydroxy 98.4 7.7E-07 1.7E-11 90.6 7.6 97 148-258 1-113 (306)
207 PRK08272 enoyl-CoA hydratase; 98.4 5.7E-07 1.2E-11 91.4 6.1 42 1-42 188-229 (302)
208 cd05293 LDH_1 A subgroup of L- 98.3 1.5E-06 3.3E-11 88.3 9.1 96 148-256 4-115 (312)
209 KOG2711 Glycerol-3-phosphate d 98.3 2.3E-06 4.9E-11 84.7 8.0 117 145-266 19-143 (372)
210 PLN02602 lactate dehydrogenase 98.3 2.3E-06 5.1E-11 88.0 8.5 96 148-256 38-149 (350)
211 PRK05708 2-dehydropantoate 2-r 98.3 1E-05 2.3E-10 82.3 12.8 114 148-275 3-118 (305)
212 cd05292 LDH_2 A subgroup of L- 98.3 3.3E-06 7.2E-11 86.0 9.1 97 148-258 1-113 (308)
213 COG1893 ApbA Ketopantoate redu 98.2 1.4E-05 3E-10 81.1 13.1 122 148-283 1-123 (307)
214 PRK15076 alpha-galactosidase; 98.2 2.9E-06 6.3E-11 90.0 8.2 76 147-234 1-83 (431)
215 cd01065 NAD_bind_Shikimate_DH 98.2 2.9E-06 6.3E-11 77.3 6.8 118 147-285 19-140 (155)
216 PRK05225 ketol-acid reductoiso 98.2 0.00046 9.9E-09 72.1 23.1 184 148-358 37-250 (487)
217 PRK13403 ketol-acid reductoiso 98.2 5E-06 1.1E-10 83.3 8.5 86 147-259 16-103 (335)
218 PRK13243 glyoxylate reductase; 98.2 7.7E-06 1.7E-10 84.2 10.1 101 148-275 151-255 (333)
219 KOG1681 Enoyl-CoA isomerase [L 98.1 3.2E-06 7E-11 78.6 5.7 95 2-132 192-287 (292)
220 PRK00066 ldh L-lactate dehydro 98.1 3.3E-06 7.1E-11 86.1 6.4 95 148-256 7-117 (315)
221 cd00300 LDH_like L-lactate deh 98.1 5.1E-06 1.1E-10 84.3 7.5 96 150-259 1-112 (300)
222 PF07991 IlvN: Acetohydroxy ac 98.1 7.1E-06 1.5E-10 73.6 7.4 87 147-259 4-92 (165)
223 COG0039 Mdh Malate/lactate deh 98.1 5.5E-06 1.2E-10 83.0 7.2 97 148-256 1-113 (313)
224 PRK08605 D-lactate dehydrogena 98.1 7E-06 1.5E-10 84.4 7.3 100 148-274 147-250 (332)
225 PRK07574 formate dehydrogenase 98.1 3.2E-05 7E-10 80.6 12.1 103 148-275 193-299 (385)
226 PRK05869 enoyl-CoA hydratase; 98.1 3.5E-06 7.6E-11 81.6 4.5 42 1-42 163-204 (222)
227 cd05290 LDH_3 A subgroup of L- 98.1 6.4E-06 1.4E-10 83.5 6.6 98 149-259 1-116 (307)
228 PRK06436 glycerate dehydrogena 98.1 2.1E-05 4.6E-10 79.6 10.0 123 148-300 123-255 (303)
229 KOG3124 Pyrroline-5-carboxylat 98.0 3E-05 6.4E-10 74.2 10.2 151 148-322 1-156 (267)
230 PLN03139 formate dehydrogenase 98.0 4.5E-05 9.7E-10 79.5 12.4 129 148-301 200-341 (386)
231 PRK15469 ghrA bifunctional gly 98.0 3.3E-05 7.2E-10 78.6 9.9 101 148-275 137-241 (312)
232 PF02558 ApbA: Ketopantoate re 98.0 4.7E-05 1E-09 69.0 9.8 110 150-276 1-116 (151)
233 cd05294 LDH-like_MDH_nadp A la 98.0 1.7E-05 3.6E-10 80.8 7.5 123 148-283 1-145 (309)
234 KOG0016 Enoyl-CoA hydratase/is 98.0 1.4E-05 3.1E-10 76.1 6.4 93 1-129 171-263 (266)
235 PLN02988 3-hydroxyisobutyryl-C 97.9 3.3E-05 7.2E-10 80.5 9.4 124 1-127 168-328 (381)
236 KOG2380 Prephenate dehydrogena 97.9 0.00017 3.7E-09 71.3 13.4 153 147-326 52-219 (480)
237 TIGR01327 PGDH D-3-phosphoglyc 97.9 6.6E-05 1.4E-09 82.1 10.7 129 148-302 139-279 (525)
238 PF02826 2-Hacid_dh_C: D-isome 97.9 1.3E-05 2.8E-10 74.9 4.3 102 148-275 37-142 (178)
239 PLN02928 oxidoreductase family 97.8 0.00011 2.3E-09 76.1 10.8 114 148-275 160-277 (347)
240 PLN00112 malate dehydrogenase 97.8 7E-05 1.5E-09 79.1 9.4 102 147-262 100-226 (444)
241 COG0111 SerA Phosphoglycerate 97.8 0.00012 2.6E-09 74.7 10.0 101 148-275 143-248 (324)
242 PRK05442 malate dehydrogenase; 97.8 4.1E-05 9E-10 78.2 6.6 101 147-262 4-130 (326)
243 TIGR01759 MalateDH-SF1 malate 97.8 4.9E-05 1.1E-09 77.6 7.2 102 148-262 4-129 (323)
244 TIGR01772 MDH_euk_gproteo mala 97.8 4.2E-05 9E-10 77.7 6.1 92 149-259 1-113 (312)
245 PRK13581 D-3-phosphoglycerate 97.7 0.00012 2.6E-09 80.0 10.1 128 148-302 141-280 (526)
246 cd01337 MDH_glyoxysomal_mitoch 97.7 7.1E-05 1.5E-09 75.9 7.6 93 148-259 1-114 (310)
247 KOG1495 Lactate dehydrogenase 97.7 0.00013 2.9E-09 70.0 8.8 100 146-259 19-134 (332)
248 TIGR02853 spore_dpaA dipicolin 97.7 8E-05 1.7E-09 74.9 7.7 90 148-264 152-242 (287)
249 cd01338 MDH_choloroplast_like 97.7 5.1E-05 1.1E-09 77.5 6.4 100 148-262 3-128 (322)
250 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00014 2.9E-09 65.9 8.2 97 148-272 24-123 (162)
251 TIGR01757 Malate-DH_plant mala 97.7 0.00011 2.5E-09 76.3 8.3 101 148-262 45-170 (387)
252 PLN02267 enoyl-CoA hydratase/i 97.7 4.9E-05 1.1E-09 74.5 4.8 42 1-42 160-202 (239)
253 cd01487 E1_ThiF_like E1_ThiF_l 97.6 0.00018 4E-09 66.8 8.0 95 149-251 1-112 (174)
254 PRK14194 bifunctional 5,10-met 97.6 9.1E-05 2E-09 74.0 6.0 70 148-261 160-230 (301)
255 PLN02851 3-hydroxyisobutyryl-C 97.6 0.00023 5E-09 74.6 9.1 123 1-127 201-361 (407)
256 PRK07531 bifunctional 3-hydrox 97.6 0.00017 3.7E-09 78.4 8.4 69 458-527 183-252 (495)
257 PRK13302 putative L-aspartate 97.6 0.00038 8.3E-09 69.5 10.0 71 145-237 4-78 (271)
258 PLN00106 malate dehydrogenase 97.6 0.00013 2.9E-09 74.3 6.7 93 148-259 19-132 (323)
259 PRK13304 L-aspartate dehydroge 97.5 0.00043 9.3E-09 69.0 9.8 85 148-258 2-90 (265)
260 PTZ00325 malate dehydrogenase; 97.5 0.00018 3.8E-09 73.4 7.1 96 145-259 6-122 (321)
261 TIGR01771 L-LDH-NAD L-lactate 97.5 9.4E-05 2E-09 74.9 5.1 94 152-259 1-110 (299)
262 cd00704 MDH Malate dehydrogena 97.5 9.5E-05 2E-09 75.6 5.1 99 149-262 2-126 (323)
263 PF01488 Shikimate_DH: Shikima 97.5 0.00014 3E-09 64.7 5.3 74 147-238 12-87 (135)
264 PRK08306 dipicolinate synthase 97.5 0.00036 7.7E-09 70.6 9.0 89 148-263 153-242 (296)
265 TIGR01758 MDH_euk_cyt malate d 97.5 0.00016 3.4E-09 74.1 5.6 99 149-262 1-125 (324)
266 PRK00257 erythronate-4-phospha 97.5 0.00014 3E-09 75.8 5.1 97 148-274 117-221 (381)
267 PRK08410 2-hydroxyacid dehydro 97.4 0.00064 1.4E-08 69.3 9.8 108 148-286 146-258 (311)
268 cd01075 NAD_bind_Leu_Phe_Val_D 97.4 0.0014 3E-08 62.4 11.5 39 148-186 29-67 (200)
269 PRK06141 ornithine cyclodeamin 97.4 0.00052 1.1E-08 70.1 8.5 92 147-262 125-219 (314)
270 PRK15409 bifunctional glyoxyla 97.4 0.0015 3.2E-08 67.0 11.5 101 148-275 146-251 (323)
271 PRK08644 thiamine biosynthesis 97.4 0.00038 8.2E-09 66.9 6.8 32 148-179 29-61 (212)
272 PRK11790 D-3-phosphoglycerate 97.4 0.00027 5.8E-09 74.8 6.3 99 148-275 152-254 (409)
273 PRK06487 glycerate dehydrogena 97.4 0.00076 1.6E-08 69.0 9.1 96 148-275 149-248 (317)
274 cd05197 GH4_glycoside_hydrolas 97.4 0.001 2.2E-08 70.5 10.3 99 148-259 1-140 (425)
275 KOG2666 UDP-glucose/GDP-mannos 97.3 0.0027 5.9E-08 62.4 11.9 202 147-361 1-251 (481)
276 KOG2653 6-phosphogluconate deh 97.3 0.0062 1.3E-07 60.9 14.4 193 147-363 6-225 (487)
277 PRK06932 glycerate dehydrogena 97.3 0.0018 4E-08 66.0 11.3 97 148-275 148-248 (314)
278 PRK04148 hypothetical protein; 97.3 0.0011 2.4E-08 58.1 8.2 95 148-263 18-112 (134)
279 PRK14188 bifunctional 5,10-met 97.3 0.00052 1.1E-08 68.8 6.8 70 148-262 159-230 (296)
280 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0017 3.8E-08 69.0 10.9 75 148-234 1-82 (437)
281 PF02056 Glyco_hydro_4: Family 97.3 0.002 4.4E-08 59.8 9.8 74 149-234 1-81 (183)
282 COG0569 TrkA K+ transport syst 97.2 0.0016 3.5E-08 63.1 9.6 93 148-261 1-100 (225)
283 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0016 3.5E-08 68.5 10.1 84 148-260 203-287 (413)
284 TIGR00507 aroE shikimate 5-deh 97.2 0.00065 1.4E-08 67.9 6.7 41 147-187 117-157 (270)
285 PRK15438 erythronate-4-phospha 97.2 0.00038 8.1E-09 72.4 5.0 97 148-274 117-221 (378)
286 cd05296 GH4_P_beta_glucosidase 97.2 0.0015 3.3E-08 69.2 9.4 75 148-234 1-83 (419)
287 PRK12549 shikimate 5-dehydroge 97.2 0.00095 2.1E-08 67.1 7.5 73 148-236 128-202 (284)
288 COG4221 Short-chain alcohol de 97.2 0.0032 6.9E-08 60.5 10.4 81 149-234 7-89 (246)
289 TIGR00745 apbA_panE 2-dehydrop 97.1 0.0034 7.4E-08 63.4 11.1 104 158-275 2-107 (293)
290 COG1748 LYS9 Saccharopine dehy 97.1 0.00083 1.8E-08 69.6 6.4 41 147-187 1-42 (389)
291 TIGR03200 dearomat_oah 6-oxocy 97.1 0.00085 1.8E-08 68.5 6.3 42 1-42 188-241 (360)
292 TIGR03222 benzo_boxC benzoyl-C 97.1 0.00031 6.6E-09 76.5 3.2 42 1-42 188-229 (546)
293 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0029 6.4E-08 64.6 10.2 71 147-238 178-250 (311)
294 TIGR02371 ala_DH_arch alanine 97.1 0.0019 4.2E-08 66.2 8.7 93 147-263 128-223 (325)
295 cd01336 MDH_cytoplasmic_cytoso 97.1 0.00087 1.9E-08 68.7 6.1 100 148-262 3-128 (325)
296 COG1052 LdhA Lactate dehydroge 97.1 0.0011 2.5E-08 67.5 6.7 101 147-274 146-250 (324)
297 PLN02306 hydroxypyruvate reduc 97.0 0.0016 3.5E-08 68.2 7.7 116 148-275 166-287 (386)
298 TIGR00936 ahcY adenosylhomocys 97.0 0.0025 5.5E-08 66.8 9.0 97 147-272 195-295 (406)
299 PRK05086 malate dehydrogenase; 97.0 0.0012 2.5E-08 67.4 6.4 94 148-259 1-115 (312)
300 PRK05476 S-adenosyl-L-homocyst 97.0 0.0024 5.2E-08 67.4 8.8 85 148-262 213-299 (425)
301 PRK06718 precorrin-2 dehydroge 97.0 0.0058 1.3E-07 58.2 10.7 129 148-317 11-142 (202)
302 PRK08184 benzoyl-CoA-dihydrodi 97.0 0.00041 8.9E-09 75.7 3.0 42 1-42 192-233 (550)
303 COG1712 Predicted dinucleotide 97.0 0.0038 8.3E-08 58.8 8.6 92 148-266 1-96 (255)
304 PRK00258 aroE shikimate 5-dehy 97.0 0.0015 3.3E-08 65.5 6.6 71 148-237 124-196 (278)
305 TIGR01470 cysG_Nterm siroheme 97.0 0.0048 1E-07 58.9 9.5 131 148-317 10-142 (205)
306 COG4091 Predicted homoserine d 96.9 0.012 2.5E-07 59.1 12.2 157 148-326 18-184 (438)
307 PRK14179 bifunctional 5,10-met 96.9 0.0014 3.1E-08 65.1 5.8 70 148-262 159-230 (284)
308 PRK07340 ornithine cyclodeamin 96.9 0.0033 7.1E-08 64.0 8.4 91 147-263 125-218 (304)
309 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0022 4.7E-08 60.7 6.6 40 148-187 29-69 (194)
310 PRK08618 ornithine cyclodeamin 96.9 0.0034 7.3E-08 64.6 8.4 94 147-264 127-223 (325)
311 PRK11861 bifunctional prephena 96.8 0.0061 1.3E-07 68.9 10.8 95 230-326 1-110 (673)
312 PF01113 DapB_N: Dihydrodipico 96.8 0.004 8.7E-08 54.4 7.1 103 148-271 1-107 (124)
313 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0036 7.8E-08 63.4 7.6 105 146-274 161-267 (336)
314 PRK13301 putative L-aspartate 96.8 0.0058 1.3E-07 59.8 8.7 74 148-248 3-82 (267)
315 smart00859 Semialdhyde_dh Semi 96.8 0.0052 1.1E-07 53.4 7.6 99 149-267 1-104 (122)
316 TIGR00518 alaDH alanine dehydr 96.8 0.0041 8.8E-08 65.1 8.0 40 147-186 167-206 (370)
317 COG0059 IlvC Ketol-acid reduct 96.8 0.015 3.3E-07 57.3 11.3 87 147-259 18-106 (338)
318 TIGR01921 DAP-DH diaminopimela 96.7 0.015 3.2E-07 59.0 11.6 124 148-338 4-133 (324)
319 TIGR02992 ectoine_eutC ectoine 96.7 0.005 1.1E-07 63.3 8.3 73 148-237 130-205 (326)
320 TIGR01035 hemA glutamyl-tRNA r 96.7 0.0037 8E-08 66.5 7.6 38 148-185 181-219 (417)
321 COG2910 Putative NADH-flavin r 96.7 0.0039 8.6E-08 57.0 6.5 38 148-185 1-39 (211)
322 PRK09310 aroDE bifunctional 3- 96.7 0.0038 8.2E-08 67.5 7.6 70 148-238 333-402 (477)
323 PTZ00075 Adenosylhomocysteinas 96.7 0.0039 8.5E-08 66.2 7.5 88 148-266 255-344 (476)
324 KOG1200 Mitochondrial/plastidi 96.7 0.0025 5.4E-08 58.7 5.1 41 147-187 13-55 (256)
325 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.0023 5E-08 58.9 4.9 72 148-263 45-117 (168)
326 PLN02494 adenosylhomocysteinas 96.7 0.004 8.6E-08 66.0 7.2 86 148-262 255-341 (477)
327 PF01118 Semialdhyde_dh: Semia 96.6 0.0038 8.2E-08 54.3 5.6 98 149-267 1-102 (121)
328 TIGR01809 Shik-DH-AROM shikima 96.6 0.0052 1.1E-07 61.8 7.3 40 148-187 126-166 (282)
329 PRK00045 hemA glutamyl-tRNA re 96.5 0.0039 8.5E-08 66.5 6.2 38 148-185 183-221 (423)
330 COG0169 AroE Shikimate 5-dehyd 96.5 0.006 1.3E-07 60.9 7.1 41 148-188 127-168 (283)
331 PLN00203 glutamyl-tRNA reducta 96.5 0.0037 8.1E-08 67.8 5.8 40 147-186 266-306 (519)
332 PRK08291 ectoine utilization p 96.5 0.012 2.6E-07 60.6 9.0 74 147-237 132-208 (330)
333 PF01408 GFO_IDH_MocA: Oxidore 96.4 0.034 7.3E-07 47.8 10.4 67 149-238 2-74 (120)
334 TIGR02356 adenyl_thiF thiazole 96.4 0.0052 1.1E-07 58.6 5.7 32 148-179 22-54 (202)
335 COG0300 DltE Short-chain dehyd 96.4 0.007 1.5E-07 59.6 6.5 48 145-192 4-52 (265)
336 PRK06719 precorrin-2 dehydroge 96.4 0.025 5.5E-07 51.5 9.7 31 148-178 14-44 (157)
337 PRK06046 alanine dehydrogenase 96.4 0.01 2.3E-07 60.9 8.0 93 147-263 129-224 (326)
338 PLN02819 lysine-ketoglutarate 96.4 0.027 6E-07 65.6 12.0 44 144-187 566-623 (1042)
339 PF03059 NAS: Nicotianamine sy 96.4 0.0098 2.1E-07 59.0 7.2 99 148-261 122-229 (276)
340 PF13460 NAD_binding_10: NADH( 96.3 0.0038 8.2E-08 58.1 4.1 36 150-185 1-37 (183)
341 PRK09424 pntA NAD(P) transhydr 96.3 0.017 3.8E-07 62.4 9.5 41 147-187 165-205 (509)
342 PRK13940 glutamyl-tRNA reducta 96.3 0.0071 1.5E-07 64.0 6.4 38 148-185 182-220 (414)
343 PRK00048 dihydrodipicolinate r 96.3 0.011 2.3E-07 58.7 7.1 36 148-183 2-40 (257)
344 PRK06407 ornithine cyclodeamin 96.2 0.02 4.4E-07 58.0 9.0 74 147-237 117-193 (301)
345 PRK12475 thiamine/molybdopteri 96.2 0.01 2.2E-07 61.2 6.9 33 148-180 25-58 (338)
346 COG1486 CelF Alpha-galactosida 96.2 0.034 7.3E-07 58.3 10.6 76 147-234 3-85 (442)
347 PRK13303 L-aspartate dehydroge 96.2 0.0061 1.3E-07 60.7 4.9 29 147-175 1-30 (265)
348 COG0686 Ald Alanine dehydrogen 96.2 0.0065 1.4E-07 60.1 4.7 92 148-260 169-266 (371)
349 PRK00683 murD UDP-N-acetylmura 96.2 0.029 6.3E-07 59.9 10.2 133 147-327 3-136 (418)
350 PRK05562 precorrin-2 dehydroge 96.1 0.035 7.5E-07 53.4 9.6 129 148-317 26-158 (223)
351 COG1064 AdhP Zn-dependent alco 96.1 0.23 5E-06 50.7 15.8 40 148-187 168-207 (339)
352 PF03435 Saccharop_dh: Sacchar 96.1 0.0035 7.6E-08 66.1 3.0 38 150-187 1-40 (386)
353 COG2423 Predicted ornithine cy 96.1 0.024 5.2E-07 57.8 8.8 92 146-260 129-223 (330)
354 PF02254 TrkA_N: TrkA-N domain 96.1 0.094 2E-06 44.8 11.4 89 150-260 1-95 (116)
355 PRK06823 ornithine cyclodeamin 96.1 0.027 5.8E-07 57.5 9.1 93 147-263 128-223 (315)
356 PRK09496 trkA potassium transp 96.1 0.059 1.3E-06 58.1 12.3 39 148-186 1-39 (453)
357 cd05191 NAD_bind_amino_acid_DH 96.1 0.027 5.8E-07 45.7 7.2 32 147-178 23-55 (86)
358 cd05311 NAD_bind_2_malic_enz N 96.0 0.046 9.9E-07 53.0 10.1 32 148-179 26-60 (226)
359 PRK14175 bifunctional 5,10-met 96.0 0.019 4.1E-07 57.3 7.4 72 148-263 159-231 (286)
360 PRK14192 bifunctional 5,10-met 96.0 0.02 4.3E-07 57.4 7.5 32 148-179 160-192 (283)
361 PRK12548 shikimate 5-dehydroge 96.0 0.012 2.7E-07 59.4 6.1 34 148-181 127-161 (289)
362 PRK06270 homoserine dehydrogen 96.0 0.039 8.4E-07 57.1 9.8 22 148-169 3-24 (341)
363 COG0373 HemA Glutamyl-tRNA red 96.0 0.0094 2E-07 62.2 5.2 40 148-187 179-219 (414)
364 PRK03659 glutathione-regulated 95.9 0.022 4.7E-07 63.7 8.3 98 148-263 401-500 (601)
365 TIGR00561 pntA NAD(P) transhyd 95.9 0.031 6.7E-07 60.4 9.0 41 147-187 164-204 (511)
366 PRK14027 quinate/shikimate deh 95.9 0.015 3.2E-07 58.5 6.2 40 148-187 128-168 (283)
367 PRK10669 putative cation:proto 95.9 0.022 4.7E-07 63.2 8.1 95 148-260 418-514 (558)
368 PRK00961 H(2)-dependent methyl 95.9 0.4 8.6E-06 46.8 15.1 106 218-326 133-242 (342)
369 COG1648 CysG Siroheme synthase 95.8 0.22 4.7E-06 47.6 13.4 130 148-317 13-145 (210)
370 PF00070 Pyr_redox: Pyridine n 95.8 0.016 3.4E-07 46.2 4.8 35 149-183 1-35 (80)
371 PF02423 OCD_Mu_crystall: Orni 95.8 0.015 3.1E-07 59.5 5.6 93 147-263 128-225 (313)
372 PRK07688 thiamine/molybdopteri 95.7 0.02 4.3E-07 59.1 6.5 33 148-180 25-58 (339)
373 PRK01438 murD UDP-N-acetylmura 95.7 0.3 6.6E-06 53.0 15.8 36 146-181 15-50 (480)
374 PRK12409 D-amino acid dehydrog 95.7 0.011 2.4E-07 62.8 4.4 34 147-180 1-34 (410)
375 PRK07589 ornithine cyclodeamin 95.7 0.056 1.2E-06 55.8 9.4 96 147-264 129-227 (346)
376 TIGR00036 dapB dihydrodipicoli 95.6 0.037 8.1E-07 55.1 7.6 32 148-179 2-36 (266)
377 PRK06153 hypothetical protein; 95.6 0.024 5.1E-07 58.6 6.2 32 148-179 177-209 (393)
378 PRK12828 short chain dehydroge 95.6 0.019 4.2E-07 55.6 5.4 38 148-185 8-46 (239)
379 PRK09496 trkA potassium transp 95.6 0.058 1.3E-06 58.1 9.5 42 146-187 230-271 (453)
380 PRK12550 shikimate 5-dehydroge 95.5 0.042 9.1E-07 54.8 7.7 39 148-186 123-162 (272)
381 PRK08340 glucose-1-dehydrogena 95.5 0.024 5.2E-07 56.0 5.9 43 148-190 1-44 (259)
382 cd01483 E1_enzyme_family Super 95.5 0.027 5.9E-07 50.3 5.6 32 149-180 1-33 (143)
383 PRK02318 mannitol-1-phosphate 95.5 0.017 3.6E-07 60.9 4.9 39 148-186 1-40 (381)
384 TIGR01723 hmd_TIGR 5,10-methen 95.5 0.78 1.7E-05 44.9 15.5 106 218-326 131-240 (340)
385 PRK12749 quinate/shikimate deh 95.4 0.041 8.8E-07 55.4 7.2 34 148-181 125-159 (288)
386 PRK03369 murD UDP-N-acetylmura 95.4 0.17 3.6E-06 55.2 12.4 35 148-182 13-47 (488)
387 KOG2018 Predicted dinucleotide 95.4 0.062 1.3E-06 53.1 7.9 110 123-247 61-185 (430)
388 PF13380 CoA_binding_2: CoA bi 95.4 0.053 1.1E-06 46.7 6.8 74 148-252 1-79 (116)
389 PRK12829 short chain dehydroge 95.4 0.054 1.2E-06 53.4 7.9 39 148-186 12-51 (264)
390 PRK03562 glutathione-regulated 95.3 0.15 3.3E-06 57.1 12.1 95 147-259 400-496 (621)
391 PRK04207 glyceraldehyde-3-phos 95.3 0.064 1.4E-06 55.5 8.4 107 147-264 1-111 (341)
392 PRK00141 murD UDP-N-acetylmura 95.3 0.14 3E-06 55.6 11.4 38 145-182 13-50 (473)
393 PF13241 NAD_binding_7: Putati 95.3 0.056 1.2E-06 45.4 6.5 73 148-248 8-81 (103)
394 PRK07326 short chain dehydroge 95.2 0.027 5.8E-07 54.7 5.0 39 148-186 7-46 (237)
395 PRK08223 hypothetical protein; 95.2 0.054 1.2E-06 54.1 7.1 33 148-180 28-61 (287)
396 PRK06196 oxidoreductase; Provi 95.2 0.043 9.3E-07 56.1 6.7 80 148-234 27-107 (315)
397 KOG1201 Hydroxysteroid 17-beta 95.2 0.022 4.7E-07 56.4 4.2 42 149-190 40-82 (300)
398 PRK05866 short chain dehydroge 95.1 0.037 8E-07 56.0 6.0 40 148-187 41-81 (293)
399 PRK07831 short chain dehydroge 95.1 0.05 1.1E-06 53.8 6.8 44 147-190 17-62 (262)
400 PRK14106 murD UDP-N-acetylmura 95.1 0.25 5.4E-06 53.2 12.7 33 148-180 6-38 (450)
401 PRK07062 short chain dehydroge 95.1 0.037 8E-07 54.8 5.9 42 148-189 9-51 (265)
402 PRK07454 short chain dehydroge 95.1 0.035 7.6E-07 54.1 5.5 40 146-185 5-45 (241)
403 PRK07774 short chain dehydroge 95.1 0.034 7.5E-07 54.4 5.5 39 148-186 7-46 (250)
404 PRK08267 short chain dehydroge 95.1 0.027 5.8E-07 55.7 4.7 40 147-186 1-41 (260)
405 PRK07890 short chain dehydroge 95.1 0.033 7.1E-07 54.8 5.3 40 148-187 6-46 (258)
406 PRK06940 short chain dehydroge 95.0 0.032 6.9E-07 55.8 5.2 42 147-189 1-43 (275)
407 PRK06199 ornithine cyclodeamin 95.0 0.061 1.3E-06 56.3 7.2 74 147-235 155-232 (379)
408 PRK06194 hypothetical protein; 95.0 0.045 9.7E-07 54.9 6.0 40 148-187 7-47 (287)
409 PRK06079 enoyl-(acyl carrier p 94.9 0.033 7.2E-07 54.9 4.8 33 148-180 8-43 (252)
410 PRK06349 homoserine dehydrogen 94.9 0.075 1.6E-06 56.7 7.7 36 147-182 3-49 (426)
411 PRK05597 molybdopterin biosynt 94.9 0.021 4.6E-07 59.3 3.4 33 148-180 29-62 (355)
412 PRK06057 short chain dehydroge 94.9 0.041 8.9E-07 54.1 5.4 39 147-185 7-46 (255)
413 PRK14189 bifunctional 5,10-met 94.9 0.06 1.3E-06 53.7 6.3 70 148-262 159-230 (285)
414 PRK05600 thiamine biosynthesis 94.8 0.027 5.9E-07 58.8 4.1 32 148-179 42-74 (370)
415 PRK07825 short chain dehydroge 94.8 0.058 1.3E-06 53.7 6.4 40 148-187 6-46 (273)
416 PRK07832 short chain dehydroge 94.8 0.066 1.4E-06 53.3 6.8 39 149-187 2-41 (272)
417 PRK07231 fabG 3-ketoacyl-(acyl 94.8 0.052 1.1E-06 53.0 5.9 40 148-187 6-46 (251)
418 COG0460 ThrA Homoserine dehydr 94.8 0.21 4.6E-06 50.7 10.2 196 147-386 3-216 (333)
419 PRK00436 argC N-acetyl-gamma-g 94.8 0.071 1.5E-06 55.2 6.9 99 147-268 2-105 (343)
420 KOG0022 Alcohol dehydrogenase, 94.7 0.6 1.3E-05 46.7 12.7 167 148-352 194-367 (375)
421 PLN03209 translocon at the inn 94.7 0.11 2.4E-06 56.8 8.5 40 148-187 81-121 (576)
422 cd01484 E1-2_like Ubiquitin ac 94.7 0.074 1.6E-06 51.7 6.6 32 149-180 1-33 (234)
423 PRK07063 short chain dehydroge 94.7 0.043 9.3E-07 54.2 5.1 43 148-190 8-51 (260)
424 PRK07523 gluconate 5-dehydroge 94.7 0.046 1E-06 53.7 5.3 40 148-187 11-51 (255)
425 PRK10538 malonic semialdehyde 94.7 0.049 1.1E-06 53.4 5.4 38 148-185 1-39 (248)
426 PRK01710 murD UDP-N-acetylmura 94.7 0.23 5E-06 53.7 11.0 35 147-181 14-48 (458)
427 PRK13394 3-hydroxybutyrate deh 94.7 0.067 1.4E-06 52.7 6.3 43 147-189 7-50 (262)
428 cd00757 ThiF_MoeB_HesA_family 94.7 0.053 1.1E-06 52.7 5.4 33 148-180 22-55 (228)
429 PRK09186 flagellin modificatio 94.6 0.062 1.4E-06 52.7 6.0 42 148-189 5-47 (256)
430 PRK08643 acetoin reductase; Va 94.6 0.05 1.1E-06 53.5 5.3 40 148-187 3-43 (256)
431 TIGR02355 moeB molybdopterin s 94.6 0.06 1.3E-06 52.7 5.7 34 148-181 25-59 (240)
432 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.066 1.4E-06 52.3 5.9 33 148-180 12-55 (244)
433 PRK12429 3-hydroxybutyrate deh 94.6 0.067 1.4E-06 52.5 6.1 40 148-187 5-45 (258)
434 PRK07478 short chain dehydroge 94.6 0.059 1.3E-06 53.0 5.7 41 148-188 7-48 (254)
435 PRK08762 molybdopterin biosynt 94.6 0.025 5.4E-07 59.4 3.1 32 148-179 136-168 (376)
436 CHL00194 ycf39 Ycf39; Provisio 94.6 0.065 1.4E-06 54.8 6.1 36 148-183 1-37 (317)
437 PRK07024 short chain dehydroge 94.6 0.045 9.8E-07 54.0 4.8 38 148-185 3-41 (257)
438 PRK00711 D-amino acid dehydrog 94.5 0.036 7.9E-07 58.9 4.3 34 148-181 1-34 (416)
439 PRK14191 bifunctional 5,10-met 94.5 0.085 1.8E-06 52.6 6.5 70 148-261 158-228 (285)
440 PRK05854 short chain dehydroge 94.5 0.069 1.5E-06 54.6 6.1 43 148-190 15-58 (313)
441 PRK07067 sorbitol dehydrogenas 94.5 0.044 9.5E-07 54.0 4.6 40 148-187 7-47 (257)
442 PRK05867 short chain dehydroge 94.5 0.049 1.1E-06 53.5 4.9 41 148-188 10-51 (253)
443 PRK05650 short chain dehydroge 94.5 0.073 1.6E-06 52.9 6.1 39 149-187 2-41 (270)
444 PRK06139 short chain dehydroge 94.5 0.06 1.3E-06 55.5 5.5 43 148-190 8-51 (330)
445 COG1063 Tdh Threonine dehydrog 94.4 0.14 2.9E-06 53.3 8.1 40 149-188 171-211 (350)
446 cd05212 NAD_bind_m-THF_DH_Cycl 94.4 0.11 2.5E-06 46.2 6.5 71 148-262 29-100 (140)
447 KOG2305 3-hydroxyacyl-CoA dehy 94.4 0.051 1.1E-06 51.4 4.3 52 460-512 189-240 (313)
448 PRK07370 enoyl-(acyl carrier p 94.4 0.16 3.4E-06 50.2 8.3 33 148-180 7-42 (258)
449 cd00755 YgdL_like Family of ac 94.4 0.09 1.9E-06 51.1 6.3 33 148-180 12-45 (231)
450 PRK08265 short chain dehydroge 94.4 0.046 1E-06 54.1 4.4 40 148-187 7-47 (261)
451 PRK05690 molybdopterin biosynt 94.4 0.077 1.7E-06 52.2 5.9 33 148-180 33-66 (245)
452 PRK07109 short chain dehydroge 94.4 0.073 1.6E-06 54.9 6.0 42 148-189 9-51 (334)
453 PRK09242 tropinone reductase; 94.4 0.067 1.5E-06 52.7 5.5 40 148-187 10-50 (257)
454 PRK08251 short chain dehydroge 94.3 0.076 1.6E-06 51.9 5.8 40 148-187 3-43 (248)
455 PRK10637 cysG siroheme synthas 94.3 0.26 5.7E-06 53.1 10.2 129 148-317 13-145 (457)
456 COG0623 FabI Enoyl-[acyl-carri 94.3 0.13 2.9E-06 48.9 6.8 170 148-327 7-185 (259)
457 PRK12939 short chain dehydroge 94.3 0.066 1.4E-06 52.2 5.2 40 148-187 8-48 (250)
458 PRK08300 acetaldehyde dehydrog 94.3 0.3 6.5E-06 49.2 9.8 97 148-265 5-104 (302)
459 PRK06505 enoyl-(acyl carrier p 94.2 0.081 1.8E-06 52.8 5.8 35 148-182 8-45 (271)
460 PRK06197 short chain dehydroge 94.2 0.085 1.8E-06 53.6 6.1 43 148-190 17-60 (306)
461 COG2344 AT-rich DNA-binding pr 94.2 0.12 2.6E-06 47.5 6.2 39 145-183 82-123 (211)
462 PRK08277 D-mannonate oxidoredu 94.2 0.08 1.7E-06 52.8 5.8 40 148-187 11-51 (278)
463 cd01076 NAD_bind_1_Glu_DH NAD( 94.2 0.16 3.5E-06 49.3 7.5 32 147-178 31-63 (227)
464 PRK05868 hypothetical protein; 94.2 0.041 8.8E-07 57.7 3.7 35 147-181 1-35 (372)
465 PRK06200 2,3-dihydroxy-2,3-dih 94.2 0.07 1.5E-06 52.8 5.2 38 148-185 7-45 (263)
466 PRK05786 fabG 3-ketoacyl-(acyl 94.2 0.17 3.6E-06 49.1 7.8 39 148-186 6-45 (238)
467 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.066 1.4E-06 52.2 5.0 39 148-186 7-46 (251)
468 PRK07576 short chain dehydroge 94.2 0.11 2.4E-06 51.5 6.6 39 148-186 10-49 (264)
469 PRK08339 short chain dehydroge 94.2 0.098 2.1E-06 51.9 6.2 43 148-190 9-52 (263)
470 cd01079 NAD_bind_m-THF_DH NAD 94.1 0.19 4E-06 47.1 7.4 88 147-264 62-158 (197)
471 cd01486 Apg7 Apg7 is an E1-lik 94.1 0.022 4.7E-07 57.0 1.4 31 149-179 1-32 (307)
472 PRK07814 short chain dehydroge 94.1 0.082 1.8E-06 52.4 5.6 41 147-187 10-51 (263)
473 PF02882 THF_DHG_CYH_C: Tetrah 94.1 0.075 1.6E-06 48.4 4.8 72 148-263 37-109 (160)
474 PRK07074 short chain dehydroge 94.1 0.06 1.3E-06 53.0 4.5 40 148-187 3-43 (257)
475 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.11 2.4E-06 50.0 6.2 33 148-180 24-57 (217)
476 PRK06138 short chain dehydroge 94.1 0.06 1.3E-06 52.6 4.5 39 148-186 6-45 (252)
477 PRK07677 short chain dehydroge 94.1 0.073 1.6E-06 52.3 5.1 40 148-187 2-42 (252)
478 PRK14852 hypothetical protein; 94.1 0.055 1.2E-06 62.3 4.7 33 148-180 333-366 (989)
479 PRK02472 murD UDP-N-acetylmura 94.1 0.25 5.5E-06 53.1 9.6 34 148-181 6-39 (447)
480 PRK05872 short chain dehydroge 94.1 0.077 1.7E-06 53.7 5.3 40 148-187 10-50 (296)
481 PRK08085 gluconate 5-dehydroge 94.1 0.086 1.9E-06 51.8 5.6 41 148-188 10-51 (254)
482 KOG0023 Alcohol dehydrogenase, 94.0 1 2.2E-05 45.2 12.7 39 147-186 182-221 (360)
483 PRK05653 fabG 3-ketoacyl-(acyl 94.0 0.11 2.4E-06 50.3 6.3 39 147-185 5-44 (246)
484 PRK07877 hypothetical protein; 94.0 0.037 8.1E-07 62.4 3.1 32 148-180 108-141 (722)
485 PRK06172 short chain dehydroge 94.0 0.088 1.9E-06 51.6 5.5 40 148-187 8-48 (253)
486 PF01266 DAO: FAD dependent ox 94.0 0.058 1.3E-06 55.5 4.4 31 149-179 1-31 (358)
487 PRK00421 murC UDP-N-acetylmura 94.0 0.56 1.2E-05 50.7 12.2 36 146-181 6-42 (461)
488 PRK08862 short chain dehydroge 94.0 0.093 2E-06 50.9 5.5 42 148-189 6-48 (227)
489 PRK06182 short chain dehydroge 94.0 0.08 1.7E-06 52.7 5.1 39 147-185 3-42 (273)
490 PRK07984 enoyl-(acyl carrier p 94.0 0.12 2.6E-06 51.3 6.4 33 148-180 7-42 (262)
491 PLN00016 RNA-binding protein; 93.9 0.12 2.5E-06 54.4 6.6 37 146-182 51-92 (378)
492 PRK06124 gluconate 5-dehydroge 93.9 0.099 2.1E-06 51.4 5.6 41 147-187 11-52 (256)
493 PRK05875 short chain dehydroge 93.8 0.1 2.3E-06 51.9 5.7 40 148-187 8-48 (276)
494 PRK12384 sorbitol-6-phosphate 93.8 0.095 2.1E-06 51.6 5.4 40 148-187 3-43 (259)
495 PRK08213 gluconate 5-dehydroge 93.8 0.11 2.3E-06 51.2 5.7 40 148-187 13-53 (259)
496 PLN02968 Probable N-acetyl-gam 93.8 0.14 3.1E-06 53.6 6.8 102 146-268 37-140 (381)
497 PRK07236 hypothetical protein; 93.8 0.065 1.4E-06 56.4 4.3 37 145-181 4-40 (386)
498 PRK05884 short chain dehydroge 93.8 0.13 2.8E-06 49.7 6.1 39 149-187 2-41 (223)
499 PRK14178 bifunctional 5,10-met 93.8 0.17 3.6E-06 50.4 6.9 71 148-262 153-224 (279)
500 PF13450 NAD_binding_8: NAD(P) 93.8 0.078 1.7E-06 40.9 3.6 29 152-180 1-29 (68)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.1e-102 Score=864.84 Aligned_cols=539 Identities=31% Similarity=0.506 Sum_probs=486.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-------------CchHHHHHHHHHHhhccCCCchhhhcccCCCCC-----chhH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIEP-----LGEA 62 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~-----~~~~ 62 (561)
|+|||++++|+||+++||||+|||+ +++.+.|.+++++++..+.+.++......++.+ ....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5899999999999999999999997 457888889998876643222111111111110 1123
Q ss_pred HHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008576 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (561)
Q Consensus 63 ~~~~~~a~~~~~~~~~~-~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~ 141 (561)
...+..+++++.+++++ ||||.+++++|+.+...+++++++.|++.|.+|+.|++++++++.|+.++..+|.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 56788889999999886 9999999999999999999999999999999999999999999999999999887531
Q ss_pred CCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 142 ~~~~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
..++++++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~ 301 (561)
+++++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~ 381 (561)
.|++++++.+..+++.+||.||+++|+||||+||++.++++||++++++|+++++||.+++++|||||||+++|.+|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhhhHhhCCCCCc--ccchHHHHHHCCcCccccCceeeeccCCC--CCCCChhHHHHHHHHhhccCccCCcccccC
Q 008576 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKL 457 (561)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (561)
++++++.++..+++++. |++++.+|+++|++|+|||+|||+|++++ +...++++..++....+. + .....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~----p--~~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLP----P--KAEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccC----c--ccccC
Confidence 99999999998887653 57899999999999999999999998654 467899988887554321 1 01135
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
++++|+||++.+++|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|.+.+|++|.|++
T Consensus 644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~ 723 (737)
T TIGR02441 644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQ 723 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCH
Confidence 67899999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCc
Q 008576 538 FLAERAGK-GATL 549 (561)
Q Consensus 538 ~l~~~~~~-g~~g 549 (561)
+|++|+++ |+.|
T Consensus 724 lL~~~~~~~g~~f 736 (737)
T TIGR02441 724 LLLDHAKSPGKKF 736 (737)
T ss_pred HHHHHHHhcCCCC
Confidence 99999987 7653
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=5.2e-100 Score=845.54 Aligned_cols=536 Identities=32% Similarity=0.557 Sum_probs=478.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCC----CchhHHHHHHHHHHHHHh-
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----PLGEAREIFKFARAQARK- 75 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~- 75 (561)
|+|||++++|++|+++||||+|||++++++.|.++++++.....++.+... .... +.......+..+++++.+
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCC--CCcccccccchHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999886653222221111 1111 111222345666775555
Q ss_pred hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcC
Q 008576 76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (561)
Q Consensus 76 ~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~ 155 (561)
..++||||..++++|+.+...+++++++.|++.|.+|+.|+++++++++|+.+|..++.+.. .+..+++++||+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 45679999999999999999999999999999999999999999999999999999886422 1234578999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEecc
Q 008576 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (561)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (561)
|+||++||..++.+|++|+++|++++.++++.+++.+.++..+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008576 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (561)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (561)
|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCC
Q 008576 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (561)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (561)
+.+||+||+++|+||||+||++.++++||++|+++|+++++||.+|+ ++|||||||+++|.+|||+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCCc--ccchHHHHHHCCcCccccCceeeeccCC---C-CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHH
Q 008576 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (561)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (561)
+++. +++++.+|+++|++|+|+|+|||+|+++ + +...|+++..++...+.. ...++.++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~Rll~ 633 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYE--------QRDFDDEEIIARMMI 633 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcc--------cCCCCHHHHHHHHHH
Confidence 7642 4689999999999999999999999643 2 456788888776543220 114677899999999
Q ss_pred HHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCC
Q 008576 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (561)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (561)
+++||+++||+|||+.+|+|||.++++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++|+++|+.
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~g~~ 712 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKNGQS 712 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999777999999999999999999999999999999999999999766 789999999999999988764
Q ss_pred c
Q 008576 549 L 549 (561)
Q Consensus 549 g 549 (561)
|
T Consensus 713 f 713 (714)
T TIGR02437 713 F 713 (714)
T ss_pred C
Confidence 3
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.8e-98 Score=833.66 Aligned_cols=532 Identities=34% Similarity=0.559 Sum_probs=479.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCC--CCchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|+|||++++|++|+++||||+|||+++++++|.++|++. . +.+++......+ .++......++.+.++++++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~-~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG-K---PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC-C---CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111110000011 1112224556667778877765
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008576 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 79 -~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|||+..+|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+... ..+++++||+|||+|.
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGSD---ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCC---CCcccccEEEEECCcH
Confidence 699999999999999999999999999999999999999999999999999888765532 2346789999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||++||..++ .+|++|+++|++++.++++..++.+.+++.++++.+++.+.+..+++|+++++++.+++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (561)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.+||.||+++|.||||+||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCC-CCCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (561)
+.|++++++|+++|++|+|||+|||+|+++ +++..++.+..++.. .+ ...++..++.||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999854 346778877665421 00 1246778999999999999999
Q ss_pred HHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 476 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
+|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.+.+.+|++|+|+++|++|+++|+.|
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f 698 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSF 698 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCc
Confidence 99999996699999999999999999999999999999999999999999999999999999999999987753
No 4
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=8.1e-98 Score=830.33 Aligned_cols=535 Identities=34% Similarity=0.580 Sum_probs=478.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCc----hhHHHHHHHHHHHHHhh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPL----GEAREIFKFARAQARKQ 76 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~ 76 (561)
|++||++++|+||+++||||+|||+++++++|.++|++++..+.+|.++.. ....+. ......++.+++.+.++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~--~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccC--cccccccccchhHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999975323322211 111111 12234566677666444
Q ss_pred -CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcC
Q 008576 77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (561)
Q Consensus 77 -~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~ 155 (561)
.++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+... ...++.|+||+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECC
Confidence 56799999999999999888999999999999999999999999999999999998865321 123467999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEecc
Q 008576 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (561)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~ 235 (561)
|.||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008576 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (561)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (561)
|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCC
Q 008576 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (561)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (561)
+.+||.||+++|+||||+||++.++++|+++++++|.+++|||.+++ ++|||+|||+++|.+|+|+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCCc--ccchHHHHHHCCcCccccCceeeeccCCC----CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHH
Q 008576 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (561)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 468 (561)
++.. +++++.+|+++|++|+|+|+|||+|+++. +...|+++..++..... . ...++.++|.||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~nRll~ 633 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREFSDEEIIARMMI 633 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCCCHHHHHHHHHH
Confidence 7632 46899999999999999999999997432 34578888777654321 0 124678899999999
Q ss_pred HHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCC
Q 008576 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (561)
Q Consensus 469 ~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (561)
+++|||++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.++++++.+. .++++|+|+++|++|+++|+.
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~~~~ 712 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAANGES 712 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999866999999999999999999999999999999999999999875 588999999999999987664
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.2e-98 Score=831.00 Aligned_cols=532 Identities=35% Similarity=0.559 Sum_probs=480.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCC--CchhHHHHHHHHHHHHHhhCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 78 (561)
|+|||++++|+||+++||||+|||+++++++|.++|+++... +++......+. ++......+..++++++++++
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPA----RRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCc----cCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999884221 01100000011 111224567788899998876
Q ss_pred -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008576 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (561)
Q Consensus 79 -~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~ 157 (561)
+|+|+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+... ..+++++||+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSD---AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC---CCCCcccEEEEECCch
Confidence 699999999999999989999999999999999999999999999999999888765532 1346799999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+....+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999998888899999999999889999999999999
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (561)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.+||.|++++|+||||+||++.++++|+++++++|+++++||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCCC---CCCCChhHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 473 (561)
+.+++++++|+++|++|+|+|+|||+|+++. +...++++...+.. .+ ...++..+|.||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999998532 34567776655421 11 12578899999999999999
Q ss_pred HHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 474 a~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
|++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.|.+.+|++|.|+|+|++|+++|+.|
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f 705 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESF 705 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCC
Confidence 9999999996699999999999999999999999999999999999999999999999999999999999987754
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=3.4e-77 Score=637.77 Aligned_cols=400 Identities=33% Similarity=0.526 Sum_probs=356.7
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+++||+|||+|.||++||.+++.+|++|++||++++.++++.+++++.++..+++|.+++++.++.+++++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++||+++..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.++++.+||.|++++++|||++||++.++++||+.++++|. ++++||.+++ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HHHhhhHhhC-CCCC-cccchHHHHHHCCcCccccCceeeeccCCCCC-CC-----------------------------
Q 008576 384 ATGMQFIENF-PERT-YKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------- 431 (561)
Q Consensus 384 ~~~~~l~~~~-~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~-~~----------------------------- 431 (561)
++++.+++.+ ++.+ .|++++++|+++|++|+|||+|||+|+++.+. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 5544 46788999999999999999999999865321 11
Q ss_pred ----------------------------------------ChhHHHHHHHHhhccCc--cCCc-----------------
Q 008576 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (561)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (561)
|+.+..++...+....+ .+..
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 11111111111100000 0000
Q ss_pred --ccccCch--HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHH
Q 008576 453 --KFAKLSE--KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (561)
Q Consensus 453 --~~~~~~~--~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (561)
.+..+.+ .+|+||++.+++|||++++++|++ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.|.+.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 0112233 699999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCccHHHHHHHHcCCCc
Q 008576 529 YG-EFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 529 ~~-~~~~p~~~l~~~~~~g~~g 549 (561)
++ ++|.|+|+|++|++.|..+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~ 501 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGY 501 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCc
Confidence 99 4899999999999998765
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.7e-75 Score=625.30 Aligned_cols=401 Identities=33% Similarity=0.550 Sum_probs=357.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
++++||+|||+|.||.+||.+++.+|++|++||++++.++++.+++++.+++.+++|.+++++.++.+++++++++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
.+||+|||||||+.++|+.+|++++..+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~ 382 (561)
+++++.+.++++.+||.+++++|+|||++||++.++++|++.++++|. ++++||.+++ ++|||||||+++|.+|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 89999999999999999999
Q ss_pred HHHHhhhHhhC-CC-CCcccchHHHHHHCCcCccccCceeeeccCCCC-CCCCh-------h-------------HHHHH
Q 008576 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDP-------E-------------VKKFI 439 (561)
Q Consensus 383 ~~~~~~l~~~~-~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~-------~-------------~~~~~ 439 (561)
+++.+.++..+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ ...++ . +.+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 44 445678999999999999999999999975432 22222 2 22221
Q ss_pred HHH----------------------------hhccCccCC-----------c--ccccC---------------------
Q 008576 440 EKA----------------------------RSMSGVAID-----------P--KFAKL--------------------- 457 (561)
Q Consensus 440 ~~~----------------------------~~~~~~~~~-----------~--~~~~~--------------------- 457 (561)
... .......+. . +..++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 100 000000000 0 00011
Q ss_pred ---------chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHH
Q 008576 458 ---------SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (561)
Q Consensus 458 ---------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (561)
+..+|+||++.+++|||++|++|||+ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.+.+.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~~ 480 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQAL 480 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45689999999999999999999998 89999999999999999 999999999999999999999999
Q ss_pred hCC-CCCccHHHHHHHHcCCCc
Q 008576 529 YGE-FFKPCAFLAERAGKGATL 549 (561)
Q Consensus 529 ~~~-~~~p~~~l~~~~~~g~~g 549 (561)
+|+ +|.|+++|++|+++|+.+
T Consensus 481 ~g~~~~~p~~ll~~~v~~G~~~ 502 (507)
T PRK08268 481 YGDPRYRPSPWLRRRAALGLSL 502 (507)
T ss_pred hCCCcCCcCHHHHHHHHcCCCc
Confidence 995 999999999999987754
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.6e-67 Score=517.83 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=270.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.++||+|||+|.||++||..++..|++|+++|++++.+++++..+.+.+++++++|.+++.+.+..+++|++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+|||+|+|++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||||+++|++|||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.+|++.+||+|++++|+||||+||++.++++||++++.+|+ +|++||.+|+ ++|||||||+++|.+|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 9999999999 899999999999999999999
Q ss_pred HHHhhhHhhCCCC-Cc-ccchHHHHHHCCcCccccCceeeeccC
Q 008576 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (561)
Q Consensus 384 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (561)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 33 678999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4e-66 Score=469.97 Aligned_cols=280 Identities=36% Similarity=0.574 Sum_probs=264.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL 219 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 219 (561)
..++.|+|||+|.||++||+..+..|++|+++|.+++.+.++.+.|.+.+.+..+++..+... ++..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999998888887765433 366788999888
Q ss_pred ccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE
Q 008576 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
+.+ .+.++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|.+|||+
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 885 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~ 376 (561)
.++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +-+|||.+|+ |.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 9999999999 99999999999999
Q ss_pred hchHHHHHHHhhhHhhCCCC--CcccchHHHHHHCCcCccccCceeeecc
Q 008576 377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (561)
+|||++..+|+.+++.+++. +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998654 4589999999999999999999999984
No 10
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-63 Score=484.13 Aligned_cols=376 Identities=42% Similarity=0.675 Sum_probs=343.7
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~ 237 (561)
||++||.++..+|++|++.|.|...++.+..++...+.+.+.++.++.........++..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (561)
+++|++++.+|+++++++||++||||+++++++++.+..|++++|+|||+|++.++++||+.+.+|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcccccchhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCC
Q 008576 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (561)
Q Consensus 318 lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~-G~~~~~ID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (561)
.|+.|++|++++||.+||++.+|+.++.++..+ |++|.++|.....||||+||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999888877 8999999999999999999999999999999888776665555543
Q ss_pred CcccchHHHHHHCCcCccccCceeeeccCCCCCCCCh-hHHHHHHHHhhccCccCCcccccCchHHHHHHHHHHHHHHHH
Q 008576 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (561)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 475 (561)
+..+|++.|+.|+|||+|||.|+++.+...++ +..+.+.... ....+...+++++++|++.+++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78899999999999999999999875544444 3333333222 11122357889999999999999999
Q ss_pred HHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHcCCCc
Q 008576 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATL 549 (561)
Q Consensus 476 ~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 549 (561)
+|++||+..+|+++|++.++|+|||+++||||+|+|..|++++++.++.|+. |+||.+|.+++++|+.+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~ 378 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKF 378 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999886 99999999999986654
No 11
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.3e-61 Score=481.96 Aligned_cols=279 Identities=33% Similarity=0.548 Sum_probs=269.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
++++||+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.++.++++|.++..+..+.+++++.+++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999889999999999999889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhc-CCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHH-hcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 304 ~~e~~~~~~~l~~-~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
++++++.+.+++. .+||.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeec
Q 008576 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (561)
+++++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 99999999999998754 58899999999999999999999998
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.5e-57 Score=456.09 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=263.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (561)
.++||+|||+|.||.+||..++.+|++|++||++++.++++.+.+.+.++...+.+.++..+ ......+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999988888888888888887766 666778898888886 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+||+|+||+.++|+++++++.+.+++++||+||+|+++++++++.+.+|+||+|+|||+|++.++++||++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|+|||++++ ++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCCc--ccchHHHHHHCCcCccccCceeeecc
Q 008576 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (561)
++.++++++++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-56 Score=449.59 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=267.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...++..++.+.++..+.+...++++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999888888888888888989888788888889888888 4689
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+|++.++|+.+++++.+.+++++||++|+|+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.++++++.+|+.+++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCCCcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999898887789999999999999999999999998654
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.7e-56 Score=448.95 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=262.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++ .++..++.+.++..+.++..+++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988887766 366677888888888888888888888887
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ 302 (561)
.+++||+||+|+|++.++|+++++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchH
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld 380 (561)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++++ ++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHhhhHhhCCCCC-cccchHHHHHHCCcCcccc-----Cceeeec
Q 008576 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~-----g~GfY~y 423 (561)
++.++++.+++.+++++ .|+++|++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998865 4778999999999999999 9999998
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.2e-56 Score=446.82 Aligned_cols=278 Identities=35% Similarity=0.609 Sum_probs=266.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.|+||+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.++...+.|.++..+......+++.++++++++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999888888877888898888888899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+||+.++|+++++++.+++++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+..+++.+|+.|++++|.|||++||++.++++|+++++++|+ +|+|||.+++ |+|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeec
Q 008576 384 ATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (561)
Q Consensus 384 ~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (561)
++++.+++.++++. .|++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 99999999998744 57889999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=3.3e-55 Score=443.85 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=269.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+++||+|||+|.||.+||..|+.+|++|+++|++++.++.+.+++++.++.+++.|.++.++.++.++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+||+|++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHH
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (561)
++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHhhhHhhCCCC-CcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999999875 4578999999999999999999999998654
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.2e-55 Score=442.46 Aligned_cols=282 Identities=32% Similarity=0.527 Sum_probs=267.0
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+.++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++.+.++..++.|.++..+....+.+++++++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 35789999999999999999999999999999999999999888888888888888988887777778889888888889
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
++||+||+|+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+|++|+||++|++.++++|++++..|+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~ 161 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD 161 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~ 382 (561)
+++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++
T Consensus 162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~ 241 (292)
T PRK07530 162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC 241 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999998 9999999999 99999999999999999999
Q ss_pred HHHHhhhHhhCCCCC-cccchHHHHHHCCcCccccCceeeeccCC
Q 008576 383 IATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (561)
Q Consensus 383 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 426 (561)
.++++.+++.++++. .|++++.+|+++|++|+|+|+|||+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 999999999888754 57889999999999999999999999754
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-53 Score=432.68 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=254.6
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc--c-cccCCC
Q 008576 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 227 (561)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.++.++.++.+++|+++++ . +.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477788999999999999999999988899999998765 3 458999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~ 307 (561)
|+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhchHHH
Q 008576 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (561)
Q Consensus 308 ~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~Gld~~ 382 (561)
++.+.+++..+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999985 9999999998 99999 699999999999999
Q ss_pred HHHHhhhHhhCCC-CCcccchHHHHHHCCcCccccCceeeeccC
Q 008576 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (561)
Q Consensus 383 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (561)
.++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998887 556889999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.5e-54 Score=433.02 Aligned_cols=277 Identities=22% Similarity=0.299 Sum_probs=247.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-c
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
++++||+|||+|+||++||..|+.+|++|++||++++.++.+.+++.+.++.+.+.+ +++. ...++++.+++++ .
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 468899999999999999999999999999999999999999888988888888877 3332 3346788888884 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++++|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~ 377 (561)
++++++.+..|++.+||.||++ +|.||||+||++.++++||++++++|+ |++|||++|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99987 9999999999
Q ss_pred chHH-HHHHHhhhHhhCCCC---CcccchHHHHHH------CCcCccccCceeeeccC
Q 008576 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (561)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~G~~G~k~g~GfY~y~~ 425 (561)
|+|. +.+.++++.+.+.+. ..++++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 445556655544221 224557777877 78899999999998864
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-46 Score=382.69 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=246.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-cc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 224 (561)
.++||+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+........+. ....+.+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443332222211 012234566666775 48
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
++||+||+|||++.+.++.+++++.+.+++++||+|+||+++++++++.+.++.+|+|+||++|++.++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhc
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~G 378 (561)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|. ++++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999985 9999999998 99998 79999999999
Q ss_pred hHHHHHHHhhhHhhCCCCCcccchHHHHHHCCcCccccCceeeeccCCC
Q 008576 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (561)
Q Consensus 379 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (561)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887788999999999999999999999997543
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-39 Score=331.84 Aligned_cols=262 Identities=24% Similarity=0.339 Sum_probs=243.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.+++...++.+.+.|.++..+....++++..+++++ .++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 5789999999999999999999999999999999999999999988999999999988777778888888888885 579
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+|++.++|+.+++++.+.+++++||+||||+++++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh--
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV-- 377 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~-- 377 (561)
++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. |+++||.+++ ++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 999999999999999999996 78999999999999999999999885 9999999999 89988 8999999987
Q ss_pred -chHHHHHHHhhhHhhCCCCC-cccchHHHHHH
Q 008576 378 -GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (561)
Q Consensus 378 -Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~ 408 (561)
|++........++..+++.. .|+|++.+|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999999888888887754 47788888887
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.7e-38 Score=296.48 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=161.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++++.++..++.+.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHH
Q 008576 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~ 308 (561)
+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+++|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEccc
Q 008576 309 VDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 309 ~~~~~l~~~lGk~~v~v~d~ 328 (561)
+.+..+++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=4.9e-36 Score=322.86 Aligned_cols=243 Identities=23% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....++++++++++ .++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHhc
Confidence 679999999999999999999999999999999998876443222211111 1111111 11124566777774 589
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
+||+||+|+||+.++|+++++++.+.+++++||+||||+++++++++.+.++.++++.|||||++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhch
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGF 379 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~Gl 379 (561)
++++.++++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+++ ++|++ +|||++.|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 999999999999999999995 89999999999999999999999875 9999999999 87764 899999999986
Q ss_pred H-HHHHHHhhhHhhC
Q 008576 380 G-VAIATGMQFIENF 393 (561)
Q Consensus 380 d-~~~~~~~~l~~~~ 393 (561)
+ .+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 5 4555556555443
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-34 Score=264.97 Aligned_cols=233 Identities=27% Similarity=0.447 Sum_probs=212.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhccccccccccc-
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYES- 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~- 223 (561)
+..||+|+|.|.+|+++|..|+..||+|.+||+.++++.-+++.+++.+..+-++|.+... .+++.+..|..++++++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3679999999999999999999999999999999999999999999888877665533211 24556778888999855
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+++|=.|-|||||++.+|+.++++++..+.+.+|++|+||++.++.+.+.+.+.++++..||.|||+++|++|++|.+-|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT 161 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT 161 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~---~GPf~~~D~~ 377 (561)
+|+++++.+++.+.+|..||... +.-||.+||+..+++||.-+++..|+ ++.|+|.+|. |+|.+ .||+|++.+.
T Consensus 162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 99999999999999999999875 68999999999999999999999997 9999999999 99976 5999998765
Q ss_pred c
Q 008576 378 G 378 (561)
Q Consensus 378 G 378 (561)
-
T Consensus 242 A 242 (313)
T KOG2305|consen 242 A 242 (313)
T ss_pred c
Confidence 4
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=2.4e-27 Score=254.95 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=152.2
Q ss_pred hcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 251 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
.+.+++++++..++.+.+..+....+|+|++|+|||+|++.++++||+++..|++++++.+..+++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34567888887777777777766678999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCC-CCcccchHHHHH
Q 008576 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (561)
Q Consensus 331 ~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v 407 (561)
||+||++.++++||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|.++++++.+++.+++ ++.|+++|++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 555889999999
Q ss_pred HCCcCccccCceeee
Q 008576 408 EDKRAGETTRKGFYL 422 (561)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (561)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 66764
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.92 E-value=1.9e-25 Score=187.57 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.4
Q ss_pred cchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhchHHHHHHHhhhHhhCCCCCc-ccchHHHH
Q 008576 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (561)
Q Consensus 330 G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 406 (561)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 899999999999999999999999999999998854 68999999
Q ss_pred HHCCcCccccCceeeec
Q 008576 407 QEDKRAGETTRKGFYLY 423 (561)
Q Consensus 407 v~~G~~G~k~g~GfY~y 423 (561)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.90 E-value=3.9e-24 Score=179.54 Aligned_cols=95 Identities=34% Similarity=0.534 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCC-CCccHHH
Q 008576 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-FKPCAFL 539 (561)
Q Consensus 461 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~l 539 (561)
+|+||++.+++|||+++++||++ +|+|||.+++.|+|||+ |||+++|.+|++.+.++++.+.+.+++. +.|++++
T Consensus 2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l 77 (97)
T PF00725_consen 2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLL 77 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHH
Confidence 68999999999999999999999 89999999999999998 9999999999999999999999999985 8899999
Q ss_pred HHHHHcCCCcccCCcccccc
Q 008576 540 AERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 540 ~~~~~~g~~g~~~g~Gfy~y 559 (561)
++|+++|++|.|+|+|||+|
T Consensus 78 ~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 78 KEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHCCCCcCcCCCcceeC
Confidence 99999999999999999998
No 28
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.88 E-value=6.4e-21 Score=204.65 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.7
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~-~~~~ID~a~~-~~G~~~GP 370 (561)
..+||+++..|++++++.+..++..+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 478999999999999999999999999999999999999999999999999999999998 8999999998 99999999
Q ss_pred HHHHHHhchHHHHHHHhhhHhhCCC-CCcccchHHHHHHCC
Q 008576 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (561)
Q Consensus 371 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G 410 (561)
|+|+|.+|+|+++++++++++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999986 555889999999986
No 29
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.87 E-value=1.9e-22 Score=184.72 Aligned_cols=99 Identities=27% Similarity=0.454 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC--CCCc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p 535 (561)
+..||+||+|.++++||+|+++.|.+ +-+|||.+|.+|.|||| |||+++|.+|+|....+|.-|.+.+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 44699999999999999999999999 89999999999999999 999999999999999999999999964 7999
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|+|.+++++|++|+|+|+|||+|.
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 9999999999999999999999994
No 30
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.8e-20 Score=189.16 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAF 538 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 538 (561)
..++.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|++.+++.++.+.+.++++|.|+++
T Consensus 184 ~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 259 (288)
T PRK09260 184 PGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPL 259 (288)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 3599999999999999999999998 89999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCccccccCC
Q 008576 539 LAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
|.+|+++|++|.|+|+|||+|++
T Consensus 260 l~~~~~~g~~G~k~g~Gfy~y~~ 282 (288)
T PRK09260 260 LEKYVKAGRLGRKTGRGVYDYTN 282 (288)
T ss_pred HHHHHHCCCCccccCCEEEECCC
Confidence 99999999999999999999964
No 31
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.82 E-value=3.5e-20 Score=186.14 Aligned_cols=97 Identities=23% Similarity=0.367 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
.-++.||++.+++|||++|+++|++ +|+|||.+++.|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|++
T Consensus 189 pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 264 (286)
T PRK07819 189 SGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPPP 264 (286)
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCCH
Confidence 4589999999999999999999998 89999999999999998 999999999999999999999999986 889999
Q ss_pred HHHHHHHcCCCcccCCcccccc
Q 008576 538 FLAERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y 559 (561)
+|++|+++|++|.|+|+|||+|
T Consensus 265 ~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 265 LLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999999999999
No 32
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.82 E-value=4.5e-20 Score=185.76 Aligned_cols=98 Identities=29% Similarity=0.472 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCcc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPC 536 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (561)
+..+|.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|+|+
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 259 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPC 259 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 45699999999999999999999998 79999999999999998 999999999999999999999999986 88999
Q ss_pred HHHHHHHHcCCCcccCCcccccc
Q 008576 537 AFLAERAGKGATLVRNLKLFFSY 559 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy~y 559 (561)
++|++|+++|++|.|+|+|||+|
T Consensus 260 ~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 260 PLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHCCCCccccCCcccCC
Confidence 99999999999999999999999
No 33
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.80 E-value=2.2e-19 Score=182.00 Aligned_cols=99 Identities=24% Similarity=0.396 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
..++.||++.+++|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|++
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPCP 261 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCH
Confidence 4589999999999999999999998 79999999999999998 999999999999999999999998986 789999
Q ss_pred HHHHHHHcCCCcccCCccccccCC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYLE 561 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~~ 561 (561)
+|.+|+++|++|.|+|+|||+|+.
T Consensus 262 ~l~~~~~~g~~G~k~g~Gfy~y~~ 285 (295)
T PLN02545 262 LLVQYVDAGRLGRKSGRGVYHYDG 285 (295)
T ss_pred HHHHHHHCCCCcccCCCeeeECCC
Confidence 999999999999999999999963
No 34
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.3e-19 Score=180.92 Aligned_cols=99 Identities=23% Similarity=0.353 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
...++.||++.+++|||++++++|++ +|+|||.+|+.|+|||+ |||+++|.+|+|.++++++.+...+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 34699999999999999999999999 89999999999999998 99999999999999999999999888753 48
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|.|+|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 8999999999999999999999995
No 35
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.80 E-value=2e-19 Score=178.52 Aligned_cols=99 Identities=25% Similarity=0.423 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhC--CCCCc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG--EFFKP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~p 535 (561)
.+-||.||++.++++||++++++|++ +|++||.+|+.++|||+ |||+++|.+|+|..+++++.+.+.++ +.|.|
T Consensus 184 ~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~~ 259 (307)
T COG1250 184 VPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYRP 259 (307)
T ss_pred CCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCccccc
Confidence 44699999999999999999999999 89999999999999998 99999999999999999999998887 36788
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++++++|++.|++|+|+|+|||+|.
T Consensus 260 ~~~~~~~v~~g~lG~Ksg~GfY~y~ 284 (307)
T COG1250 260 PPLLRKLVEAGRLGRKSGKGFYDYR 284 (307)
T ss_pred cHHHHHHHhcccccccCCCcceecc
Confidence 9999999999999999999999996
No 36
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=8.8e-19 Score=177.17 Aligned_cols=97 Identities=25% Similarity=0.266 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccH
Q 008576 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (561)
Q Consensus 459 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (561)
..++.||++.+++|||++++++|++ +++|||.+++.++|||+ |||+++|.+|++.+.++++.+.+.+++ +|.|++
T Consensus 188 pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 263 (291)
T PRK06035 188 PGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPN 263 (291)
T ss_pred CCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccH
Confidence 4589999999999999999999999 89999999999999998 999999999999999999999998886 789999
Q ss_pred HHHHHHHcCCCcccC-----Ccccccc
Q 008576 538 FLAERAGKGATLVRN-----LKLFFSY 559 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~-----g~Gfy~y 559 (561)
+|++|+++|++|.|+ |+|||+|
T Consensus 264 ~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 264 SLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999999 9999999
No 37
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.2e-18 Score=176.32 Aligned_cols=97 Identities=25% Similarity=0.392 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (561)
-++.||++.+++|||++++++|++ ++++||.++++|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|+++
T Consensus 187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 262 (292)
T PRK07530 187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPL 262 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHH
Confidence 589999999999999999999998 89999999999999997 999999999999999999999988876 7899999
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|.+|+++|++|.|+|+|||+|+
T Consensus 263 l~~~v~~g~~G~k~g~Gfy~y~ 284 (292)
T PRK07530 263 LVKYVEAGWLGRKTGRGFYDYR 284 (292)
T ss_pred HHHHHHCCCCccccCCEeeeCC
Confidence 9999999999999999999994
No 38
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.6e-18 Score=175.87 Aligned_cols=100 Identities=28% Similarity=0.335 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (561)
.++.||++.++++||+.|+++|++ +|++||.++..|+|||++.+|||+++|.+|++.++++++.+.+.+++ +|.|+++
T Consensus 183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~ 261 (314)
T PRK08269 183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPAI 261 (314)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 479999999999999999999998 89999999999999999999999999999999999999999988887 8999999
Q ss_pred HHHHHHcCCCcccCCccccccC
Q 008576 539 LAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 539 l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
|++|+++|++|.|+|+|||+|+
T Consensus 262 l~~~v~~g~~G~ksG~GfY~y~ 283 (314)
T PRK08269 262 VVRNMEEGRDGLRTGAGFYDYA 283 (314)
T ss_pred HHHHHHCCCCcccCCCcceeCC
Confidence 9999999999999999999995
No 39
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.74 E-value=9.8e-17 Score=157.83 Aligned_cols=186 Identities=20% Similarity=0.264 Sum_probs=138.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||.+||.+|.++||+|++||+++++..+.. ...|... ..+..+.+.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcCCcc------------cCCHHHHHHhC
Confidence 4899999999999999999999999999999998843211 1233211 12223668899
Q ss_pred CEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCCC------CCeE
Q 008576 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
|+||.|||++.++...++. .+.+.+++++++++.+ |++++ ++++.+. -.|.+|+. |+.. ...+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999988888777774 5778888999887544 44443 4444442 23777774 5543 2334
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.|+.| .+++.+++++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..+++
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~ 207 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVIS 207 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 45554 48999999999999999999999874 443 688887754 579999987 5899999999998
No 40
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.71 E-value=2.8e-17 Score=183.81 Aligned_cols=97 Identities=28% Similarity=0.289 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
+..+|.||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 3469999999999999999999996 6999999996 899999 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|.|+|+|||+|+
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~ 582 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYG 582 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCC
Confidence 99999999999999999999996
No 41
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.70 E-value=3.8e-17 Score=183.23 Aligned_cols=97 Identities=26% Similarity=0.300 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (561)
.+.+|.||++.+++|||++++++|+ +|+|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 3458999999999999999999998 5999999998 899999 999999999999999999999998999999999
Q ss_pred HHHHHHHcCCCcccCCccccccC
Q 008576 538 FLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 538 ~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+|++|+++|++|.|+|+|||+|+
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~ 587 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYG 587 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECC
Confidence 99999999999999999999996
No 42
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=4.7e-17 Score=166.33 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHH
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 539 (561)
.++.||++.++++||+.++++|++ +|++||.++..++|||+++.|||+++|.+|++.+.+++..+.+.++++|.|+++|
T Consensus 184 G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l 262 (311)
T PRK06130 184 GFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPLL 262 (311)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHHH
Confidence 469999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccCCccccccC
Q 008576 540 AERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 540 ~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++|+++|++|.|+|+|||+|+
T Consensus 263 ~~~~~~g~~G~~~g~gfy~y~ 283 (311)
T PRK06130 263 EEKVEAGELGAKSGQGFYAWP 283 (311)
T ss_pred HHHHHcCCccccCCCcCccCC
Confidence 999999999999999999996
No 43
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.70 E-value=1.9e-15 Score=151.86 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=120.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|||+|.||.+||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+.+|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998876643 233221 122344567899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC------------CCCeE
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv 295 (561)
|+||+|+|++ ...++++++.+.++++++| +.++++....+........+|+++||+.+.. ....+
T Consensus 59 DlVilavp~~--~~~~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIG--LLLPPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 9999999954 4456788998888888877 4555666665555545556799999986442 24566
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+++++.++++.++.+..+++.+|..++.++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 78898999999999999999999999998873
No 44
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.70 E-value=3e-16 Score=158.74 Aligned_cols=187 Identities=17% Similarity=0.296 Sum_probs=136.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..|++.|++|++||+++++++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 22321 1112224578999
Q ss_pred EEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC------CCCeEE
Q 008576 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~------~~~lve 296 (561)
+||+|+|++..++..++. .+.+.++++++|+. +|+.++. ++.+.+... |+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999988777666553 35666788888874 4455443 455555322 566655 322 123345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc---chhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~G 365 (561)
++.+ .+++.++.++++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++..++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3689999999999999999999975 556 4788888865 789999886 5789999999998 544
No 45
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.67 E-value=1.4e-16 Score=178.55 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCC--c
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFK--P 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~--p 535 (561)
.+.+|.||++.+++|||++++++|+ +|++||.++ .++|||+ |||+++|.+|+|..+++++.+...++++|. |
T Consensus 516 ~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~~ 589 (737)
T TIGR02441 516 GPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLGKAFGERFGGGS 589 (737)
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCccccccc
Confidence 4469999999999999999999998 699999997 6999999 999999999999999999999988888874 7
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
++++++|+++|++|+|+|+|||+|+
T Consensus 590 ~~~l~~~v~~G~~G~k~G~GfY~y~ 614 (737)
T TIGR02441 590 AELLSELVKAGFLGRKSGKGIFIYQ 614 (737)
T ss_pred CHHHHHHHHCCCCcccCCCeeEEcC
Confidence 8999999999999999999999996
No 46
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.67 E-value=2.4e-15 Score=152.66 Aligned_cols=188 Identities=17% Similarity=0.265 Sum_probs=136.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++||+|||+|.||.++|..|++.|++|++||++++.++... +.+. ...+++ +.+.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 35899999999999999999999999999999998766532 2221 123333 3468
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccCCC-CC------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPA-HV------MP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~-~~------~~ 293 (561)
+||+||+|+|+...++..++ ..+.+.++++++|+ ++|+.++. ++++.+... |.||++++ .. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 89999999998877665554 34667778889887 45555543 455544322 67776543 22 13
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccch---hhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (561)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|++ +|+++.. .++|++.+.+ .|+++++++.+++ +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3555555 3688999999999999999998875 56764 7777665 3789999987 5789999999987 4
Q ss_pred cC
Q 008576 364 FG 365 (561)
Q Consensus 364 ~G 365 (561)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
No 47
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.67 E-value=2e-16 Score=177.48 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
++.+|.||++.+++|||++++++| + +++|||.+++.++|||+ |||+++|.+|+|.++++++.+...+++++ .|
T Consensus 494 ~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 568 (715)
T PRK11730 494 CPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDY 568 (715)
T ss_pred cCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccch
Confidence 446999999999999999999999 6 79999999999999998 99999999999999999999998888753 46
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|.|+|+|||+|+
T Consensus 569 ~~~l~~~v~~G~~G~k~g~GfY~y~ 593 (715)
T PRK11730 569 RDAIDVLFEAKRFGQKNGKGFYRYE 593 (715)
T ss_pred hHHHHHHHHCCCCccccCCEeEecc
Confidence 7899999999999999999999995
No 48
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.66 E-value=2.5e-16 Score=176.30 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCC--Cc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KP 535 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p 535 (561)
.+.+|.||++.++++||++++++| + +|++||.++..++|||+ |||+++|.+|+|..+++++.+...+++++ .|
T Consensus 494 ~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~ 568 (714)
T TIGR02437 494 CPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDG 568 (714)
T ss_pred cccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccch
Confidence 346999999999999999999999 5 79999999999999999 99999999999999999999988888754 35
Q ss_pred cHHHHHHHHcCCCcccCCccccccC
Q 008576 536 CAFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 536 ~~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+++|++|+++|++|+|+|+|||+|+
T Consensus 569 ~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 569 RDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hHHHHHHHHCCCCcccCCCEEEecc
Confidence 7899999999999999999999994
No 49
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.59 E-value=2.6e-14 Score=148.95 Aligned_cols=171 Identities=22% Similarity=0.260 Sum_probs=122.9
Q ss_pred cceEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+++|+||| +|.||+++|..|..+|++|++||++... . .. +.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~~------------~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------AE------------DIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------HH------------HHH
Confidence 568999998 8999999999999999999999986310 0 00 225
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCCCCeEE--EEeC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~ 300 (561)
.+||+||+|+|++ ...++++++.+ +++++||++++|.. ++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~--~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIH--LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHH--HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 6899999999965 45788889888 89999999988863 4566665543 3699999998876543322 4445
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEcc-cccchhhhH--HHHH--HHHHHHHHHcCCCHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRM--FFPY--TQAAFLLVERGTDLYLI 357 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nrl--~~~~--~~ea~~l~~~G~~~~~I 357 (561)
+.++++.++.+.++++.+|..++.++. ....++..+ +.-+ +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 567888999999999999999999873 344433222 2112 23445555556665554
No 50
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.58 E-value=1.3e-13 Score=137.72 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=135.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+... +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765422 222 1122333
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~ 300 (561)
+.+++||+||.|++ ++...+++.++.+.+.++++|+|.+++++++.+.+..+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 34678999999996 5667888888888888889888998999999998776544 788888888876654444 5567
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEccc--c---cch--hhhHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i--~nrl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
..++++.++.++++++.+|. ++++++. . |.. ...++ ..+.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776431 0 111 11112 22222211 3457899999888876
No 51
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=9.3e-13 Score=131.63 Aligned_cols=189 Identities=18% Similarity=0.177 Sum_probs=134.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
|+||+|||+|.||.+++..|.++| ++|.++|++++..+...+. .+ +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999999876553311 01 1112333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~ 301 (561)
.+.+||+||+|+| +....++++++.+.+ +++|+|.+++++...+...+++..+++..||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 4678999999997 556778888887766 567888899999999988777667899999998876655454 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEccc--ccch-hh----hHHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-VN----RMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i-~n----rl~~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (561)
.++++..+.+..+++.+|..+.+..+. .... .. ..++.++...... ...|+++++...++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999744443221 1111 11 1222222222332 347888888776665
No 52
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.52 E-value=5.4e-13 Score=128.87 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=135.1
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
.+.++|++||+|.||.+|+.+|.++||+|++|||+.++++... +.|... ..+..|..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVa 89 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVA 89 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHH
Confidence 3578999999999999999999999999999999999887633 444211 12233557
Q ss_pred CCCCEEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCC---HHHHHhhccCccceeccccc-CCCCC------C
Q 008576 225 KDVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFF-SPAHV------M 292 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~~~r~ig~h~~-~P~~~------~ 292 (561)
++||+||.+||....++..++.. +...++++.......|++. ..++++.+.+. +..|. .|++. .
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~ 165 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEE 165 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhc
Confidence 89999999999888887777754 3333334433312233333 34777665432 33443 35543 3
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-ccc---chhhhHHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nrl~~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
..+.|+.+ .++++++...++++.+||+.+.++. ..| .+.|+++.+. +.|++.+.+ .|+++..+-.++.
T Consensus 166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln 242 (327)
T KOG0409|consen 166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN 242 (327)
T ss_pred CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 45666666 6899999999999999999999975 344 3788887754 578888875 6899999888887
No 53
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=5.8e-13 Score=133.86 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=134.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+.+||+|||+|.||.+|+..|+++| ++|+++|++++ .++.... ..| +..+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence 3469999999999999999999998 78999999764 3333211 011 112233
Q ss_pred c-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCC-CeEEEE
Q 008576 221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIV 298 (561)
Q Consensus 221 ~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-~lveiv 298 (561)
. +.+.+||+||.||+ ++...+++.++.+.+.++++|+|..++++++.+.+.+++..++++.||+.|.... .+.-++
T Consensus 59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 3 34678999999998 4556677788888888889999988999999898877655679999998776553 344455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEccc--c---cchh--hhHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i~--nrl~~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (561)
+++..+++..+.+++++..+|+.. ++.+. . |... .. +...+.|++. .+..|+++++...++.
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777788999999999999999844 43321 1 1100 01 1223334433 3467889888887775
No 54
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.51 E-value=6e-13 Score=134.74 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=125.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.+. ...++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 2221 122233 45789
Q ss_pred CCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceeccccc-CCCCC-------CC
Q 008576 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~ 293 (561)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+.++. ++++.+... |.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~----g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAK----GFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEccCCCCHHHHHhCc
Confidence 99999999987655544432 3555677788775 55555554 444443211 33333 23322 23
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-cc---chhhhHHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---~i~nrl~~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
++-++.+ +++.++.++++++.+|+.++++++. .| .++|+++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3334444 8899999999999999999998852 23 25565544 33579988876 6899999877776
No 55
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=9.7e-13 Score=131.17 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=138.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +...++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999886653210 12 1122333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEE-EeCC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTN 301 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lvei-v~~~ 301 (561)
.+.+||+||.|++ ++...++++++.+.++++++|+|...+++++.+.+.++...+++..+|+.|......+.. .+++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 4689999999998 577888889998888889999999999999999998876678999999999887666554 4677
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEccc--ccc-hhhhH---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNRM---FFPYTQAAF--LLVERGTDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~-i~nrl---~~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (561)
..+++..+.+..++..+|+. +.+.+. ..+ .+.-. +..++.|++ ..+..|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78899999999999999987 444431 110 01111 112233332 23456777777666554
No 56
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.50 E-value=3.4e-13 Score=140.18 Aligned_cols=221 Identities=17% Similarity=0.170 Sum_probs=142.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.+||..|.++|++|.+|+++++..+... ....+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999876543321 11122211 112333 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------------C
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~ 291 (561)
||+||+|+|. .....+++++.+ .++++++|++.+|.. .+..+........+|++.||+.... .
T Consensus 61 aDlVilavP~--~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPV--DATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCH--HHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 9999999995 467889999987 478888887655543 2445555545678999999975431 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc-ccccchhhhHHH--HHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAFLLVERGTDLYLIDRAITKFGMP- 367 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nrl~~--~~~~ea~~l~~~G~~~~~ID~a~~~~G~~- 367 (561)
+..+.++++..++++.++.+.++++.+|..++.+. +....++..+.. .++.+++ ....+.+....-... +-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~la-~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRLA-AGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhhh-cccccC
Confidence 34466888888999999999999999999998886 345555443322 3444444 112222222221111 22332
Q ss_pred ------ccHHHHHHHhchH--HHHHHHhhhHhh
Q 008576 368 ------MGPFRLADLVGFG--VAIATGMQFIEN 392 (561)
Q Consensus 368 ------~GPf~~~D~~Gld--~~~~~~~~l~~~ 392 (561)
.-|=.|.|.+--. .+...++.+...
T Consensus 217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~ 249 (359)
T PRK06545 217 ITRIASSDPGMWRDILESNAEALLDALDEWIED 249 (359)
T ss_pred CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2577777776532 344444444433
No 57
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.49 E-value=1e-12 Score=131.76 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=110.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|..+ ...+.+++.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhc
Confidence 79999999999999999999996 7899999998766532 233211 1123333456
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCccceecccccCC------CC------CCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFSP------AH------VMP 293 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h~~~P------~~------~~~ 293 (561)
||+||.|+|. ....+++.++.+ ++++++|++.+|+.. +.+..... .+.+|++.||+.+ .. ...
T Consensus 59 aD~Vilavp~--~~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPV--DAIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcH--HHHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 9999999994 455677888888 888998877555322 22222111 2357999999853 22 244
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+.+++.+.++++.++.+.++++.+|..++.+++
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 6677888888999999999999999999998874
No 58
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.48 E-value=1.7e-13 Score=126.24 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=99.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
|+||+|||+|.||.+||.+|+++|++|++||++++++++.. +.+ ++...+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999998877643 222 2334444 4468
Q ss_pred CCCEEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------VM 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~-------~~ 292 (561)
+||+||.|+|.+.+ .++++.. +.+.+.++++|+. +|+.+++ ++++.+.. .|.||.. |+. ..
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 89999999997555 4566666 7888888987763 4445544 44444321 2455553 332 24
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
.+.-++.| +++.++.++++++.+++.+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCcee
Confidence 56666676 789999999999999998874
No 59
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.47 E-value=2.3e-12 Score=127.78 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=119.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc--cc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (561)
.++|+|+|+|.||+++|..|..+|+.|.+++++.. .++.+. +.|..+. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----------~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----------ELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----------hcCcccc-----------cccchhhh
Confidence 46999999999999999999999998876666554 333322 3343321 1112 34
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------CCCe
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------~~~l 294 (561)
.+.++|+||.||| +....++++++.+.+++++||+..+|.. ++..+.+..+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 5788999999999 7778899999999999999999888865 3556655554323899999997662 2455
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++++.++.+.++.++++++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 67888888899999999999999998888876
No 60
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.46 E-value=2.2e-12 Score=137.11 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=118.9
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
+||+||| +|.||.++|..|..+|++|+++|++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 4899997 7999999999999999999999999876533111 112 1122333 4578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC--CCHHHHHhhccCccceecccccCC----CCCCCeEEEEe
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P----~~~~~lveiv~ 299 (561)
+||+||.|+|. .....+++++.+.++++++|++.+|. .+...+.+.++...+|++.||+.. ......+.+++
T Consensus 58 ~aDvVIlavp~--~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPI--NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCH--HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99999999994 45568889999989999999887774 345566666655568999998743 33466777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++.++++.++.+.+++..+|..++.++
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999988876
No 61
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.45 E-value=1.6e-12 Score=131.22 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=127.9
Q ss_pred EEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEE
Q 008576 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 230 (561)
|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 2221 122333 457899999
Q ss_pred EEeccCChhhHHHHH---HHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceecccccC-CCCC-------CCeEE
Q 008576 231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAHV-------MPLLE 296 (561)
Q Consensus 231 ieav~e~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~~-------~~lve 296 (561)
|.|||.+..+ +.++ ..+.+.+++++++++ +|++++.. +++.+.. .|.+|.. |+.. ..+..
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 9999965544 4455 567777788887764 44666543 3333321 2555553 4332 34444
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc-cccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~G 365 (561)
++.| +++.++.+++++..+|+.++++++ ..|. ++|+++.. .+.|++.+.+ .|++++++..++. +.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 5555 678899999999999999999986 4554 56766553 3679998876 5899999999988 544
No 62
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.44 E-value=3.9e-12 Score=135.54 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=127.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc---
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (561)
.+.+|+|||+|.||.+||..|+++|++|++|||++++.+...+. ....|.. .+....+++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~-------~~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh-------hhhcCCc----------ccccCCCHHHHH
Confidence 35689999999999999999999999999999999988764321 0001210 011222332
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhccCccceecccccC-CCC-------C
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAH-------V 291 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~-P~~-------~ 291 (561)
.++.+|+||.|||.+..+ ++++..+.+.+.++.||+..+++.+- .++++.+.. .|+||+. |+. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC
Confidence 244599999999976655 45557888888888888754433332 234443321 2566652 443 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEcc-cccc---hhhhHH-HH---HHHHHHHHHHc--CCCHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMF-FP---YTQAAFLLVER--GTDLY 355 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~nrl~-~~---~~~ea~~l~~~--G~~~~ 355 (561)
++ .++.| .++++++.++++++.++.. ++++++ ..|. ++|+.+ .. .+.|++.+.+. |++++
T Consensus 143 G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~ 218 (493)
T PLN02350 143 GP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNE 218 (493)
T ss_pred CC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 34 35555 4889999999999999853 778876 2333 344443 33 35799988864 88999
Q ss_pred HHHHHHH
Q 008576 356 LIDRAIT 362 (561)
Q Consensus 356 ~ID~a~~ 362 (561)
++-.++.
T Consensus 219 ~l~~vf~ 225 (493)
T PLN02350 219 ELAEVFA 225 (493)
T ss_pred HHHHHHH
Confidence 9998854
No 63
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.44 E-value=3.2e-12 Score=128.93 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=122.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2221 122311 1112224468999
Q ss_pred EEEEeccCChhhHHHHHHH--HHhhcCCCceeeecCCCCCHH---HHHhhcc-CccceecccccCCC----CCCCeEEEE
Q 008576 229 MVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA----HVMPLLEIV 298 (561)
Q Consensus 229 lVieav~e~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~----~~~~lveiv 298 (561)
+||.|+|++.+++..++.. +.+.+.++.+|+. +|+.++. ++++.+. +..+|+. +|+... ....+.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999876665555432 4555677887754 4555544 4444442 2333444 233211 123334444
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
.| +++.++.++++++.+|+.++++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 7899999999999999999999863 332 56666553 2578988876 5899999877776
No 64
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.43 E-value=4.3e-12 Score=135.13 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=129.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (561)
.+|+|||+|.||.+||..|+++||+|++||++++..+...+. ....|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK-------AKEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-------hhhcCC-----------cceecCCHHHHHhc
Confidence 589999999999999999999999999999999988764421 001121 1223334432
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MP 293 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~ 293 (561)
+.++|+||.+|+.. +..+++++++.+.+.++.||+..+++.+.+ ...+.+. --|+||+. |+.. ++
T Consensus 64 l~~~d~Iil~v~~~-~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAG-EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCCh-HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 34689999999854 455667788999999999888766665543 2222221 12666653 4432 33
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEcc-cccc----hhhhHHHHH---HHHHHHHHH--cCCCHHHH
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLI 357 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~----i~nrl~~~~---~~ea~~l~~--~G~~~~~I 357 (561)
. ++.| .++++++.++++++.++.. ..++++ ..|. +.|-+...+ +.|++.+.+ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 5554 3789999999999999977 567775 3442 334444433 579999985 67899999
Q ss_pred HHHHH
Q 008576 358 DRAIT 362 (561)
Q Consensus 358 D~a~~ 362 (561)
-.++.
T Consensus 215 ~~v~~ 219 (470)
T PTZ00142 215 SEVFN 219 (470)
T ss_pred HHHHH
Confidence 88886
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.42 E-value=4e-12 Score=129.63 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=114.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
.++||+|||+|.||.++|..|...|+ +|++||++++.++.+. +.|... ....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 45799999999999999999999995 8999999998766532 223211 112223 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCC---------
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~--------- 291 (561)
.+.+||+||+|+|. .....+++++.+.++++++|++.+|.- .+..+....+...+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp~--~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPV--GASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCH--HHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 47899999999995 445678888888888888776544422 13344444444558999999875332
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
...+.+++...++++.++.+.++++.+|..++.++
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 23355777777889999999999999999988876
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.41 E-value=1.5e-11 Score=124.80 Aligned_cols=189 Identities=10% Similarity=0.093 Sum_probs=124.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.+.....+. .++ +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~s~----------~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVANL----------RELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccCCH----------HHHHhhcCC
Confidence 3799999999999999999999999999999998876633 2221110000 011 23567
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhc-cCccceecccccCCCC--CCCeEEEEeCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~P~~--~~~lveiv~~~ 301 (561)
+|+||.|+|.+ ..++++.++.+.++++.+|++.+++.+.+ ++.+.+ ....+|+..+..-.+. ...+.-++.|
T Consensus 60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999965 56778889999888888887655554332 333333 2223344433322111 1123333344
Q ss_pred CCcHHHHHHHHHHHHhcCC---ceEEEccc-ccc---hh-hhHHHHH---HHHHHHHHHc-C--CCHHHHHHHHH
Q 008576 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AV-NRMFFPY---TQAAFLLVER-G--TDLYLIDRAIT 362 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~-nrl~~~~---~~ea~~l~~~-G--~~~~~ID~a~~ 362 (561)
+++.++.++++++.++. ..+++++. .|. ++ |-+.... +.|++.+.+. | ++++++-.+|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78999999999999986 46777752 332 23 3344333 4688888875 4 59999999987
No 67
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.41 E-value=5e-12 Score=134.09 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=130.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (561)
+||+|||+|.||.++|..|+++||+|++||++++.++...+.. ..+.+...+.. .++++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGK----------SPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCC----------CCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 3799999999999999999999999999999999877633210 00000001111 1345566666
Q ss_pred c-ccCCCCEEEEeccCChh--------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHh-hccC--c-----ccee
Q 008576 222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS--K-----DRIV 281 (561)
Q Consensus 222 ~-~l~~aDlVieav~e~~~--------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-~~~~--~-----~r~i 281 (561)
+ .+++||+||.|||.... ....+.+.+.+.++++++|+. +|++++. ++.. .+.. . .-.+
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 4 48899999999997542 456667788888888887764 4555443 3322 2111 0 0112
Q ss_pred cccccCCCCCCC--e-------EEEEeCCCCcHHHHHHHHHHHHhcC-CceEEEccc-cc---chhhhHH----HHHHHH
Q 008576 282 GAHFFSPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQA 343 (561)
Q Consensus 282 g~h~~~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~-~G---~i~nrl~----~~~~~e 343 (561)
.. +|....+ + -.++.| .+++..+.+++++..++ +.++.+++. .+ .++++.+ .++++|
T Consensus 150 ~~---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE 224 (411)
T TIGR03026 150 AY---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANE 224 (411)
T ss_pred EE---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3332211 1 134545 48899999999999998 577777652 22 2455555 356899
Q ss_pred HHHHHH-cCCCHHHHHHHHH
Q 008576 344 AFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 344 a~~l~~-~G~~~~~ID~a~~ 362 (561)
+..+.+ .|++++++-.++.
T Consensus 225 ~~~la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 225 LARICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHHHHhCCCHHHHHHHhC
Confidence 999987 5899999988886
No 68
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.40 E-value=1.2e-11 Score=130.87 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=127.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
.++||+|||+|.||.++|..|+++||+|++||+++++++..... +.+.+.+.++. +++..
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceee
Confidence 36799999999999999999999999999999999988753211 01111111111 23444
Q ss_pred cccccccCCCCEEEEeccCC--------hhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCc-cc--e--e
Q 008576 218 VLDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSK-DR--I--V 281 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~-~r--~--i 281 (561)
+++ +++||+||.|||.+ ......+++.+.++++++++|+. .|+.++. ++...+... .. + .
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCccccc
Confidence 433 45899999999964 25566677889899999987753 3444332 333222110 00 0 0
Q ss_pred ---cccc---cCCCC--CCC-------eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-cc---chhhhHHH----
Q 008576 282 ---GAHF---FSPAH--VMP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF---- 338 (561)
Q Consensus 282 ---g~h~---~~P~~--~~~-------lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G---~i~nrl~~---- 338 (561)
+..| ++|-. -+. +.-++.| .+++..+.+.++++.+++.++.+++. .+ .++++.+.
T Consensus 146 ~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~i 223 (415)
T PRK11064 146 AGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNI 223 (415)
T ss_pred ccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 0011 24411 111 1134544 47899999999999999877777642 22 24555544
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 339 PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 339 ~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++||+..+.+ .|+++.++-+++.
T Consensus 224 a~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 224 AFANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 45799988887 5899999988775
No 69
>PLN02256 arogenate dehydrogenase
Probab=99.39 E-value=7.1e-12 Score=126.61 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=111.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (561)
.++|+|||+|.||.++|..|.+.|++|+++|+++.. +.+. ..|. ...++.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 458999999999999999999999999999998632 1111 1121 11223332 3
Q ss_pred CCCCEEEEeccCChhhHHHHHHHH-HhhcCCCceeeecCCC--CCHHHHHhhccCccceecccccCCCCCC------CeE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~------~lv 295 (561)
.++|+||.|+| +....++++++ ...++++++|++.+|. .++..+.+.++...+|++.||+.++... ..+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 44567788888 5667889999888774 5566777766555689999999877532 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
-+++. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788899999999999999999886
No 70
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.36 E-value=2.5e-11 Score=123.14 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=121.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC--
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-- 225 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~-- 225 (561)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ +.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhC
Confidence 799999999999999999999999999999998766532 2221 11223322 22
Q ss_pred -CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccC-CCCC------CCeE
Q 008576 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 226 -~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
.+|+||.|+|.+.. .+.++..+.+.++++.+|+..+++.+ ..++.+.+.. .|.+|.. |+.. ....
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 37999999996644 45566778777788887764433323 2344444422 1445543 3321 1223
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC---ceEEEccc-ccc---hhhhHHHH----HHHHHHHHHH-cC--CCHHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RG--TDLYLIDRAI 361 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nrl~~~----~~~ea~~l~~-~G--~~~~~ID~a~ 361 (561)
-++.| ++++++.++++++.+|. ..+++++. .|. ++|+++.. .+.|++.+.+ .| ++++++-.+|
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 33344 78899999999999997 67888752 222 45555442 2579999987 46 7898888888
Q ss_pred H
Q 008576 362 T 362 (561)
Q Consensus 362 ~ 362 (561)
+
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 6
No 71
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.36 E-value=6e-11 Score=121.56 Aligned_cols=205 Identities=16% Similarity=0.116 Sum_probs=134.0
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~ 237 (561)
|.+||..|+++||+|++||++++.++... .+.....| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11122222 2333343 4578999999999964
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH----HHhhccCccceecccccCCCCC----CCeEEEEeCC------CC
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~------~t 303 (561)
. ..++++..+.+.++++++|+ ++|+.+... +.+.+..+.+.+|.||++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 3 46778888999899898876 455555443 3345554556778888876542 2234555543 33
Q ss_pred cHHHHHHHHHHHHhcCCceEEEcccccc---hhhhHHHHH----HHHHHHHHHc-CCCHHHHHHHHH-hcCCCccHHHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVER-GTDLYLIDRAIT-KFGMPMGPFRLA 374 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~---i~nrl~~~~----~~ea~~l~~~-G~~~~~ID~a~~-~~G~~~GPf~~~ 374 (561)
+++.++.++++++.+|+.+++++...|. ..|+++.+. ..|++.+.+. |.+|.+.-+-+- .. -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 8899999999999999989888743333 345555543 4688887764 556665443332 21 13556666
Q ss_pred HHhchHHHHHHH
Q 008576 375 DLVGFGVAIATG 386 (561)
Q Consensus 375 D~~Gld~~~~~~ 386 (561)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 667776655543
No 72
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.35 E-value=4.8e-11 Score=121.26 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=122.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----c
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----F 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----l 224 (561)
||+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ +
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhhc
Confidence 899999999999999999999999999999998876532 2221 11222222 2
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccCccceecccccC-CCCC------CCeE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL 295 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv 295 (561)
.++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+ ..++++.+.. .|.+|.. |+.. ..+
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~- 131 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY- 131 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC-
Confidence 347999999996544 35566778778888887765443333 2234443322 1455543 3322 123
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC----ceEEEccc-ccc---hhhhHHH-HH---HHHHHHHHH---cCCCHHHHHHH
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMFF-PY---TQAAFLLVE---RGTDLYLIDRA 360 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~-~G~---i~nrl~~-~~---~~ea~~l~~---~G~~~~~ID~a 360 (561)
.++.+ .++++++.++++++.+++ ..+++++. .|. ++|+.+. .. +.|++.+.+ .|++++++-.+
T Consensus 132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444 488999999999999998 78888862 333 3444433 32 578988886 46899999999
Q ss_pred HH
Q 008576 361 IT 362 (561)
Q Consensus 361 ~~ 362 (561)
|+
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 87
No 73
>PLN02600 enoyl-CoA hydratase
Probab=99.34 E-value=3e-12 Score=126.51 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=88.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ +
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~------------------------------------p 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG------------------------------------P 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 37778999999887788999999999999999999999999999999998754
No 74
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.34 E-value=1.6e-11 Score=119.98 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=124.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...+ + ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~----------~------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAA----------E------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHH----------H------------cCCcc-cCcHH
Confidence 368999999999999999999999 589999999998763221 1 11111 2333
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE-eC
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RT 300 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv-~~ 300 (561)
+.+..+|+||.||. ++...++++++.+ ..++.+|+|...+++++.+...++ ..+++..+|+.|......+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 55788999999995 7888899999988 778999999999999999999998 7889999999998876666644 56
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEE
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
...+++..+.+.++++.+|+...+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEe
Confidence 788999999999999999976554
No 75
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.34 E-value=3.2e-12 Score=126.47 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+++..
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK 253 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 367788999988877889999999999999999999999999999999988764
No 76
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.33 E-value=2.2e-12 Score=130.32 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++++.++|++|+.. | +
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~----------------------------------p 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI--P----------------------------------L 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 579999999999999999999999999999999999999984 2 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHhHHhcCHHHH--------HHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~~~~l~~E~~~~~~l~~s~~~~--------~~~~aF~~kr~~~k~ 134 (561)
.++..+|++++.+.. .+++++++.|...+..+..|+|++ +++.+|++||+|...
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 477889999998766 469999999999999999999997 599999999988654
No 77
>PLN02888 enoyl-CoA hydratase
Probab=99.33 E-value=3.6e-12 Score=126.78 Aligned_cols=99 Identities=25% Similarity=0.305 Sum_probs=88.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++.+.|.+++++++..+ +
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN------------------------------------Q 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHh--cCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~--~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+...+|++++.....++++++..|.+.+..++ .++++++++++|++||+++|.+
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 477889999998888889999999998888875 5999999999999999998864
No 78
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.32 E-value=3.7e-12 Score=126.34 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=88.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS------------------------------------L 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 47888999999988889999999999999999999999999999999987653
No 79
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.32 E-value=1e-11 Score=129.76 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=117.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA----NLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
||+|||+|.||.++|..++. ||+|++||+++++++...+.+.. .++..... ...+++.+++. +.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 99999999999998876543211 11111110 11234444544 44
Q ss_pred cCCCCEEEEeccCChh---------hHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccCCCCC
Q 008576 224 FKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV 291 (561)
Q Consensus 224 l~~aDlVieav~e~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~~~ 291 (561)
+.+||+||+|||++.+ ...++++.+.. ++++++|+ ..||+++. ++...+. +. ++.| +|...
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l 143 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--TE--NIIF-SPEFL 143 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--cC--cEEE-Ccccc
Confidence 7899999999998743 33456677776 57777664 44555544 3333221 11 2222 44422
Q ss_pred C--Ce--------EEEEeCCCCcHHHHHHHHHHHHh--cCCc-eEEEcc-cccc---hhhhHHH----HHHHHHHHHHH-
Q 008576 292 M--PL--------LEIVRTNQTSPQVIVDLLDIGKK--IKKT-PIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE- 349 (561)
Q Consensus 292 ~--~l--------veiv~~~~t~~e~~~~~~~l~~~--lGk~-~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~~- 349 (561)
. .+ ..++.+ +++..+.+.+++.. ++.. ++++.+ ..+. ++++.+. +++||...+.+
T Consensus 144 ~~G~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 144 REGKALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cCCcccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 223333 34556777777744 4543 334554 2222 4555544 45799988876
Q ss_pred cCCCHHHHHHHHH
Q 008576 350 RGTDLYLIDRAIT 362 (561)
Q Consensus 350 ~G~~~~~ID~a~~ 362 (561)
.|+++.++-.++.
T Consensus 221 ~GiD~~eV~~a~~ 233 (388)
T PRK15057 221 LGLNTRQIIEGVC 233 (388)
T ss_pred hCcCHHHHHHHhc
Confidence 5899999998884
No 80
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=2.4e-11 Score=121.84 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=118.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
|+||+|||+|.||.+|+..|.++| ++|++|+++.+. ++... .. ...+..+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 00 0011222333
Q ss_pred -cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEE-e
Q 008576 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv-~ 299 (561)
+.+.++|+||.|+| ++...++++++.+.++++++|+|...++++.++.+.++. .+++.++|+.|......+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 34689999999998 566778889998888888888899999999999987753 489999999998776665544 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678899999999999999987654
No 81
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.32 E-value=2.9e-12 Score=122.14 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=90.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||.++++++|.+|+++|+..+ +
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~------------------------------------~ 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS------------------------------------P 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 6899999999999999999999999999999999999999952 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++++.|+.++.+...++.+++..|...|...+.++|.+|++.+|.+||+++.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 37778999999999999999999999999999999999999999999888765
No 82
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.31 E-value=3.7e-13 Score=142.53 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=116.6
Q ss_pred eEEEEEcCccchHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.||+|||+|.||.+++. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 38999999999998665 23 55688999999999998876554433322 111 11356777886
Q ss_pred -cccCCCCEEEEecc----------CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccC--ccceecccccCC
Q 008576 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (561)
Q Consensus 222 -~~l~~aDlVieav~----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~r~ig~h~~~P 288 (561)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 57899999999998 35888999999999999999999999999999999988764 6 8999999999
Q ss_pred CCCC-----CeE--EEEeCCCCcHHHHHHHHHHHHhcCCc
Q 008576 289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKT 321 (561)
Q Consensus 289 ~~~~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lGk~ 321 (561)
+..+ +.. -++.... .+......+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~c~---~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGLCH---GVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEECC---cHHHHHHHHHHHhCCC
Confidence 8653 222 2332211 1444555666667753
No 83
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.31 E-value=5.2e-12 Score=125.21 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 37778999999888888999999999999999999999999999999987764
No 84
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=3.5e-12 Score=125.77 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD------------------------------------T 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
.+...+|+.++.....++++++..|...+..++.++|+++++.+|++||+|
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 377789999988777788999999999999999999999999999999864
No 85
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=6.1e-12 Score=124.88 Aligned_cols=97 Identities=30% Similarity=0.433 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS------------------------------------P 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 37788999999887778999999999999999999999999999999987754
No 86
>PRK07680 late competence protein ComER; Validated
Probab=99.31 E-value=1.1e-10 Score=116.97 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=110.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 149 KVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
+|+|||+|.||.+|+..|.++|+ +|+++|++++..+...+. . ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHHH
Confidence 79999999999999999999984 799999998876542210 0 012223333 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-CCeEEEEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv~~~~ 302 (561)
+.++|+||.|++ +....++++++.+.+.++++|++.++++++..+...++ .+++..+|..|... ....-++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 689999999997 55567888888888888888888888899988887764 34556666544322 12223445666
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEc
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788888999999999995 55554
No 87
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=4.8e-12 Score=125.81 Aligned_cols=96 Identities=26% Similarity=0.388 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS------------------------------------P 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.++..+|++++.....++++++..|.+.+..++.|+|+++++.+|++||+++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 3777889999988888899999999999999999999999999999998764
No 88
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=5.5e-12 Score=126.43 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP------------------------------------T 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999888888999999999999999999999999999999998764
No 89
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.30 E-value=5.8e-12 Score=125.48 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS------------------------------------P 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|.+.+..++.++|+++++++|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999988888999999999999999999999999999999987764
No 90
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=7.3e-12 Score=124.51 Aligned_cols=97 Identities=32% Similarity=0.314 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||+++++++|.+++++++.. | +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~----------------------------------~ 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM--P----------------------------------P 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 578999999999999999999999999999999999999874 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|++++.....++++++..|.+.+..++.|+++++++++|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 91
>PLN02858 fructose-bisphosphate aldolase
Probab=99.30 E-value=6.2e-11 Score=140.88 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=132.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
-+||+|||+|.||.+||.+|+++||+|++||+++++.+... +.|. ...++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGG-------------HRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------eecCCHHHHHh
Confidence 46899999999999999999999999999999998877633 2332 112333 4567
Q ss_pred CCCEEEEeccCChhhHHHHH--HHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceec--cccc-CCCC-------
Q 008576 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH------- 290 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig--~h~~-~P~~------- 290 (561)
+||+||.|+|++..++..++ ..+.+.+.++.+++ .+||+++. ++++.+.. .| .+|. .|+.
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHh
Confidence 89999999998876665554 35666677888775 34555554 44444422 13 4454 3443
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEE-cc-cccc---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHH
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRA 360 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d-~~G~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a 360 (561)
...+.-++.| +++.++.++++++.+|+..+++ ++ ..|. ++|+++.. .+.|++.+.+ .|++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2445555566 7889999999999999988865 54 2333 56766653 3579998876 68999999999
Q ss_pred HH-hcC
Q 008576 361 IT-KFG 365 (561)
Q Consensus 361 ~~-~~G 365 (561)
+. +.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 87 554
No 92
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=9.4e-12 Score=123.90 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~------------------------------------~ 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG------------------------------------P 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC------------------------------------h
Confidence 5799999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 93
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=9.1e-12 Score=123.98 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP------------------------------------T 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778999999888888999999999999999999999999999999987653
No 94
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.28 E-value=9.5e-12 Score=123.69 Aligned_cols=97 Identities=26% Similarity=0.390 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 47788999999888888999999999999999999999999999999997764
No 95
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.28 E-value=3.7e-11 Score=123.73 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=103.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
++|+|||+ |.||+++|..|.+. |++|+.+|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 59999999 99999999999864 8999999985211 1111 347
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhh---cCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCCC-----CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~l 294 (561)
.+||+||.|+| .....++++++.++ ++++++|+..+|... +..+ .....+|+|.||+..++. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 66778899998876 689999988777653 3333 223346999999986643 334
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++. ...+.++.+.++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 445555 345557889999999999998886
No 96
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=1.1e-11 Score=123.07 Aligned_cols=97 Identities=24% Similarity=0.275 Sum_probs=88.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|++|+++||||+|||++++++.+.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS------------------------------------P 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 47778899999887888999999999999999999999999999999998764
No 97
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=1.2e-11 Score=122.80 Aligned_cols=97 Identities=24% Similarity=0.310 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS------------------------------------P 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.+..|.+.+..++.++++++++.+|++||+++.
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 47778999999887778999999999999999999999999999999987654
No 98
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.1e-11 Score=122.90 Aligned_cols=97 Identities=26% Similarity=0.305 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA------------------------------------P 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++.++++.|...+..++.++|+++++.+|++||+++.
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999988754
No 99
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.2e-11 Score=123.43 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P----------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 37778999998887788999999999999999999999999999999987654
No 100
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.4e-11 Score=121.95 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=87.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG------------------------------------P 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.++|+++++.+|++||+++.
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778899999887778999999999999999999999999999999887653
No 101
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.26 E-value=1.5e-11 Score=121.81 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~------------------------------------~ 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS------------------------------------P 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 37778999999888888999999999999999999999999999999987654
No 102
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.2e-11 Score=122.48 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=85.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG------------------------------------P 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 37778999999887788999999999999999999999999999999874
No 103
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.26 E-value=1.8e-10 Score=118.45 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=103.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
|+||+|||+|.||..+|..|+++|++|++||++++.++...+.. . ....... . .....+..+++.+ .+.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~-~-~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADR---E-----NPRYLPG-I-KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC---c-----ccccCCC-C-cCCCCeEEeCCHHHHHh
Confidence 46899999999999999999999999999999998776543210 0 0000000 0 0011233344553 467
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-------HHHhhccCccceecccccCCCC------C-
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH------V- 291 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~P~~------~- 291 (561)
+||+||.|+|. .....++.++.+.+.+++++++.++++... .+.+........ .....|.. .
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~ 146 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL 146 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence 99999999995 467788889998888899887766555432 222222210010 11112321 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
..++.+ .+ .+.+.++.+.++++..|..+....|..
T Consensus 147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~ 181 (325)
T PRK00094 147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVI 181 (325)
T ss_pred CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 122333 33 368889999999999997776655543
No 104
>PLN02858 fructose-bisphosphate aldolase
Probab=99.26 E-value=1.2e-10 Score=138.42 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=130.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
..++|+|||+|.||.+||..|+.+|++|++||+++++++... ..|.. ...+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence 357999999999999999999999999999999998876532 22211 12233 457
Q ss_pred CCCCEEEEeccCChhhHHHHHH--HHHhhcCCCceeeecCCCCCHH---HHHhhccCccceecccccC-CCC-------C
Q 008576 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------V 291 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~-------~ 291 (561)
++||+||.|||.+.+++..++. .+.+.+.++.+++ ++|++++. ++++.+.. .-.|.+|.. |+. .
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999977666555443 3556667788765 34555544 34443322 013566653 432 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc--c---hhhhHHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 008576 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nrl~~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
..+.-++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .+.|++.+.+ .|++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344555555 678999999999999998877543233 2 56666553 3579988875 689999988888
Q ss_pred H-hcC
Q 008576 362 T-KFG 365 (561)
Q Consensus 362 ~-~~G 365 (561)
. +.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 7 544
No 105
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.6e-11 Score=122.41 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=87.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++.. | +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~--~----------------------------------~ 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG--P----------------------------------T 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC--C----------------------------------H
Confidence 578999999999999999999999999999999999999874 2 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999987754
No 106
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.25 E-value=1.1e-11 Score=124.10 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=89.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||+.++|+||+++||||+|||.+++++.|.+++++++..+ |
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S----------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5899999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++|.+.||..
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 3777899999988777899999999999999999999999999999998887754
No 107
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.8e-11 Score=121.60 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.++..+|+.++.....++++++..|.+.+..++.|+++++++++|+++|+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 47788999999888788999999999999999999999999999999987653
No 108
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.7e-11 Score=121.91 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~------------------------------------~ 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA------------------------------------P 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5899999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.......+..++.|...+..++.|+|+++++.+|++||+++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37778899988776556788899999999999999999999999999998754
No 109
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.7e-11 Score=121.98 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=86.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++.+++.++|++++..+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS------------------------------------P 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++. ++.|...+..++.|+|+++++.+|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 377788999988777788888 88899999999999999999999999998764
No 110
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.25 E-value=3.7e-10 Score=128.89 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=117.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
++||+|||+|.||.+++..+...| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 579999999999999999999999 48999999998766532 223211 012233 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhcc-CccceecccccCCCC----------
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~~---------- 290 (561)
+.++|+||+|+| +....++++++.+.++++++|++.+|.. .+..+.+.+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 4577889999998888888776544432 2556665543 357899999975222
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
....+.+++...++++..+.+.++++.+|..++.++
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567888888899999999999999999888886
No 111
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.25 E-value=1.8e-11 Score=122.53 Aligned_cols=97 Identities=23% Similarity=0.160 Sum_probs=86.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|||+ +++.+.+.++|++|+..+
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~------------------------------------ 218 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS------------------------------------ 218 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC------------------------------------
Confidence 5789999999999999999999995 889999999999999842
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.+...+|++++.....+++++++.|...+..++.|+|+++++.+|++||++..
T Consensus 219 p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 219 PLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 237778899999887788999999999999999999999999999999987754
No 112
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.9e-11 Score=121.93 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP------------------------------------P 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++.+..|.+.+..++.|+|+++++.+|++||++..
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 37778999999887788999999999999999999999999999999987654
No 113
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.8e-11 Score=121.57 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=85.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS------------------------------------P 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHH--HHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E--~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....+++++++.| ...+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 3777889999988778899999998 4578889999999999999999887653
No 114
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.24 E-value=1.7e-10 Score=122.02 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=123.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhh--hccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKT--ISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~--~~~i~~~~~~~~ 223 (561)
+||+|||+|.||..+|..|+. ||+|++||+++++++... .|.. .+...+.. .+++.++++.+.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~~g~l~~t~~~~~ 73 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELREARYLKFTSEIEK 73 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHhhCCeeEEeCHHH
Confidence 589999999999999999887 699999999999987643 2211 11011111 235666777777
Q ss_pred cCCCCEEEEeccCCh--------hhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHH-hhccC--ccceecccc---c
Q 008576 224 FKDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS--KDRIVGAHF---F 286 (561)
Q Consensus 224 l~~aDlVieav~e~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~--~~r~ig~h~---~ 286 (561)
+++||++|.|||... .......+.|.+.++++.+|+ ..||+++. ++. ..+.. ..++ +-.| +
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~-~~~~~~~~ 151 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTF-NQDFYVGY 151 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCc-CCCeeEee
Confidence 899999999998652 223333457888888888765 34444433 221 11111 0010 1111 1
Q ss_pred CCCCC---------CCeEEEEeCCCCcHHHHHHHHHHHHhcC-CceEEEcc-cccc---hhhhHHH----HHHHHHHHHH
Q 008576 287 SPAHV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLV 348 (561)
Q Consensus 287 ~P~~~---------~~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~~G~---i~nrl~~----~~~~ea~~l~ 348 (561)
+|... ..+--++.| .+++..+.+..+++.+. ..++++.+ ..+. ++++.+. +++||+..+.
T Consensus 152 ~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la 229 (425)
T PRK15182 152 SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF 229 (425)
T ss_pred CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 111225555 35778889999999875 33555554 2332 4565554 4579999888
Q ss_pred H-cCCCHHHHHHHHH
Q 008576 349 E-RGTDLYLIDRAIT 362 (561)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (561)
+ .|+++.++-.++.
T Consensus 230 e~~GiD~~~v~~a~~ 244 (425)
T PRK15182 230 NRLNIDTEAVLRAAG 244 (425)
T ss_pred HHhCcCHHHHHHHhc
Confidence 6 5899999888875
No 115
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.24 E-value=1.6e-10 Score=123.23 Aligned_cols=186 Identities=16% Similarity=0.153 Sum_probs=124.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc----ccc
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 224 (561)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987764311 00010 01112222 234
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~l 294 (561)
..+|+||.|||... ...+++.++.+.+.++.||+..+++.+.+ ...+.+.. .|.||+. |+.. .+
T Consensus 62 ~~~dvIil~v~~~~-~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGA-PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence 67999999999754 44567788989898999887666555433 22222211 1455542 3322 22
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCce------EEEcc-cccc---hh-hhHHHHH---HHHHHHHHH--cCCCHHHHH
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF---AV-NRMFFPY---TQAAFLLVE--RGTDLYLID 358 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d-~~G~---i~-nrl~~~~---~~ea~~l~~--~G~~~~~ID 358 (561)
.++.| .++++++.++++++.++..+ .++++ ..|. ++ |-+...+ +.|++.+.. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444 47899999999999998763 56765 2343 34 4444433 579998873 688999998
Q ss_pred HHHH
Q 008576 359 RAIT 362 (561)
Q Consensus 359 ~a~~ 362 (561)
.++.
T Consensus 213 ~v~~ 216 (467)
T TIGR00873 213 EVFT 216 (467)
T ss_pred HHHH
Confidence 8885
No 116
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.24 E-value=2.3e-10 Score=115.70 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=110.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
-++|+|||.|.||.++|..|...|++|++++++.++..... .+.|. ...+..+.++.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~ 73 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKW 73 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhc
Confidence 36899999999999999999999999999888754322210 11121 11222245789
Q ss_pred CCEEEEeccCChhhHHHHH-HHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC-------CCCeEE-E
Q 008576 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-I 297 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-------~~~lve-i 297 (561)
||+|+.++|... ...++ +++.+.++++++| +..+++++.......+...+++-.+|..|.+ .+..+. +
T Consensus 74 ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 999999999543 36777 7799999999988 7788888888765555556788899999987 322222 3
Q ss_pred E-eCCCCcHHHHHHHHHHHHhcCCceE
Q 008576 298 V-RTNQTSPQVIVDLLDIGKKIKKTPI 323 (561)
Q Consensus 298 v-~~~~t~~e~~~~~~~l~~~lGk~~v 323 (561)
+ .+...+.+..+.+..+++.+|.++.
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3 3455668889999999999998865
No 117
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.1e-11 Score=121.99 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=86.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|++||++++|+||+++||||+|||+ +++++.+.+++++++.. |
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~---------------------------------- 216 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--S---------------------------------- 216 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--C----------------------------------
Confidence 5789999999999999999999996 78999999999999884 2
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.+...+|+.++.....+++++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 217 ~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 217 PLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 237778899999887778999999999999999999999999999999997653
No 118
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=4.7e-10 Score=111.47 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=121.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 149 KVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
||+|||+|.||.+|+..|.+.|+. |.++|+++++.+...+. . ......++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------F------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------c------------CCceEeCCHHHHH
Confidence 799999999999999999999864 58999998876543211 0 011222333 336
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~ 304 (561)
.+||+||.|++ ++...+++.++. ..++++|+|..+++++..+...+....+++..||+.|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 78999999998 455567777662 45778888888899999999888665678888888776544333443321
Q ss_pred HHHHHHHHHHHHhcCCceEEEcc--cccc-----hhhhHHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 008576 305 PQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (561)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~d--~~G~-----i~nrl~~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (561)
.+.++++++.+|..+.+..+ ..-+ .... +..++.++... ...|+++++...++.
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-YFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25788999999988775432 1111 1111 11244555544 456888888777664
No 119
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.4e-11 Score=121.60 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=87.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 37778999999887888999999999999999999999999999999987654
No 120
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.4e-11 Score=120.87 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=87.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|+.++.+...+++++++.|.+.+..++.|+++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 3677889999988888899999999999999999999999999999998765
No 121
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.22 E-value=5.5e-10 Score=110.11 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=112.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.+||+|||+|.||.+++..++++|+ + |+++++ ++++++...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 4689999999999999999998873 3 777887 45655442210 01 1223344
Q ss_pred -cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeE-EEEe
Q 008576 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVR 299 (561)
Q Consensus 222 -~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lv-eiv~ 299 (561)
+.+.++|+||.|+| +...+++++++.+.++ +.+|+|.+.+++++.+...++...+++..||+.|......+ -++.
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 34688999999999 4456788888887665 56888999999999999888765678889998776543332 2345
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008576 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
....+++..+.+++++..+|..+.+
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5667899999999999999988864
No 122
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.22 E-value=1.3e-11 Score=133.39 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=89.7
Q ss_pred cccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (561)
++||++|+|+||+++||||+|||++++++++.++|++++..+ +.
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------p~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS------------------------------------PD 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC------------------------------------HH
Confidence 589999999999999999999999999999999999999842 24
Q ss_pred cHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhhccCCCC
Q 008576 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSKV 134 (561)
Q Consensus 82 A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~---~~~aF~~kr~~~k~ 134 (561)
|+..+|++++.+...+++++ +..|.+.|..+++|+|+++ ++++|++||+++..
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 88889999999999999999 9999999999999999999 99999999998653
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.21 E-value=1.3e-11 Score=132.88 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=89.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++|+|+||++|||||+|||++++++++.++|++|+..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhcCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~-l~~E~~~~~~l~~s~~~~~---~~~aF~~kr~~~k 133 (561)
.|+..+|++++.+...+++++ +..|.+.|..++.|+|+++ ++.+|++||+|+.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 478889999999988999999 9999999999999999999 9999999999865
No 124
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.21 E-value=3.3e-11 Score=119.84 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=85.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA------------------------------------P 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHH----HHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~----~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|. ..+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 37778899998887788999988886 478889999999999999999987654
No 125
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.21 E-value=4.9e-11 Score=118.75 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++||+|||+|.||+++|..|+++||+|++|.++++.+++.... +++...-++ -.....+.+++|++ .++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--------~~N~~yLp~--i~lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--------RENPKYLPG--ILLPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--------CcCccccCC--ccCCcccccccCHHHHHh
Confidence 3699999999999999999999999999999999988763321 111111110 01234677788885 477
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC------HHHHHhhccCccceecccccCCCC-------CC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID------LNLIGERTYSKDRIVGAHFFSPAH-------VM 292 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~------~~~l~~~~~~~~r~ig~h~~~P~~-------~~ 292 (561)
+||+|+.+|| .+..+++++++...+++++++++.+.++- ++++.+..-....+. ....|+ ..
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~---vLSGPs~A~EVa~g~ 145 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIA---VLSGPSFAKEVAQGL 145 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEE---EEECccHHHHHhcCC
Confidence 8999999999 67889999999888999999888776653 344443321111111 122222 23
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
|...++.+ .+++..+.++.++..--.+++...|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 33334444 4777778888877764444555455443
No 126
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4e-11 Score=119.21 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=87.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|+|++++++.|.++|++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A----------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++++..|.+.+..++.++++++++++|+++|+++.
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 36667889998888888999999999999999999999999999999887653
No 127
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=3.2e-11 Score=119.86 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=86.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|| ++++.+.+.+++++++.. | +
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~--~----------------------------------~ 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK--P----------------------------------L 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC--C----------------------------------H
Confidence 57899999999999999999999 788999999999999884 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|+.
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 37778899998887788999999999999999999999999999999998754
No 128
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.20 E-value=2.2e-10 Score=116.06 Aligned_cols=202 Identities=14% Similarity=0.065 Sum_probs=133.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||+|.||.++|..|...|++|+++++. .+..+.+. +.|. ...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhc
Confidence 58999999999999999999999998876554 33333211 1221 12222245789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-------CCeE-EEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~lv-eiv 298 (561)
||+||.++|+.. ....+.+++.+.++++. ++|...+++++.+...++...+++...|+.|.+. +..+ -++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999542 35566777888888776 5678889999988877765568999999999973 4444 454
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCc-------eE--EEc-ccccc--hhhhHHHHHH---HHHHHHHHcCCCHHHHHHHHH
Q 008576 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYT---QAAFLLVERGTDLYLIDRAIT 362 (561)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~~G~--i~nrl~~~~~---~ea~~l~~~G~~~~~ID~a~~ 362 (561)
.+...+.+..+.+..++..+|.. .. .+. |--+. .+.-...+++ .|++ ++.|++++.--....
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 66677888999999999999988 21 111 11111 1122222332 2443 788888877555443
Q ss_pred -hcCCCccHHHHHHHhchH
Q 008576 363 -KFGMPMGPFRLADLVGFG 380 (561)
Q Consensus 363 -~~G~~~GPf~~~D~~Gld 380 (561)
.+ .|--+++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 21 3555555555553
No 129
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=1.5e-09 Score=109.12 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=132.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH---H-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR---V-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~---i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (561)
.+|+|||+|.+|.++|..++++|++|+.+|+|+.+++..... | ...+...++ .++++.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 799999999999999999999999999999999988764321 1 111222222 25678899
Q ss_pred cccccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhc-------cCccceec
Q 008576 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERT-------YSKDRIVG 282 (561)
Q Consensus 220 ~~~~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~-------~~~~r~ig 282 (561)
+.+.++.||++|.|||. |+.......+.|.+.+.++.+++.-+++.| .+++..-+ ..+..|--
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999974 455677778889999999998775444444 22333221 11212111
Q ss_pred ccccCCCCCC---CeEE------EEeCCCCcHHHHHHHHHHHHhcCCceEEEccc-ccc---hh----hhHHHHHHHHHH
Q 008576 283 AHFFSPAHVM---PLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AV----NRMFFPYTQAAF 345 (561)
Q Consensus 283 ~h~~~P~~~~---~lve------iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~----nrl~~~~~~ea~ 345 (561)
. ++|-..+ .+.| |+.| .+++..+.+..+++.+-+..+.+.+. ... +. ..+-.++.||-.
T Consensus 158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 1333221 1222 5555 57889999999999976666666542 221 22 233346788877
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 008576 346 LLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 346 ~l~~-~G~~~~~ID~a~~ 362 (561)
.+.+ .|++..++-.+..
T Consensus 234 li~~~~GIdvwevIeaAn 251 (436)
T COG0677 234 LICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHhCCcHHHHHHHhc
Confidence 7665 6898877666664
No 130
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.19 E-value=3.8e-11 Score=119.55 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=84.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS------------------------------------P 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHH-HHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~-E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++.. +.+.+..++.|+++++++.+|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence 377788999998888888888765 45677888999999999999999987653
No 131
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.18 E-value=3.2e-11 Score=122.26 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHH-HHHHHHHHHHHhCC---CC
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY-IYSRLEEWSSLYGE---FF 533 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~ 533 (561)
.+.||.||++.+++|||++++++|++ +++|||.+++.|+|+|+..-|||+++|.+|+|. +.+.++++...+.. .+
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~ 264 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL 264 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence 34699999999999999999999999 899999999999999955569999999999997 45555555443321 13
Q ss_pred CccHHHHHHHH------cCCCcccCCcccccc
Q 008576 534 KPCAFLAERAG------KGATLVRNLKLFFSY 559 (561)
Q Consensus 534 ~p~~~l~~~~~------~g~~g~~~g~Gfy~y 559 (561)
.+++++.++++ .+..+.++..++|.|
T Consensus 265 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (321)
T PRK07066 265 VAPELTDALIDRVVEGTAEQQGPRSIKALERY 296 (321)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33345555555 578888999999887
No 132
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=6.6e-10 Score=112.19 Aligned_cols=199 Identities=18% Similarity=0.294 Sum_probs=127.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
+||+|||+|..|...+.+|+..||+|+.+|+++++++...+.+ +..++.+++++..+ +|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5899999999999999999999999999999999988765432 22444444443221 4689999996
Q ss_pred ccCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhcc--Cccceecccc---c
Q 008576 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHF---F 286 (561)
Q Consensus 223 ~l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~--~~~r~ig~h~---~ 286 (561)
+++++|++|.||+. |......+.+++.++++..++|+ +-|+.|+. ++.+.+. .+.+ +| +
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~----~f~v~~ 147 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGK----DFEVAS 147 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccC----CceEec
Confidence 58999999999965 44467778888999888766553 56777754 3333221 1111 22 2
Q ss_pred CCCCC----------CCeEEEEeCCCCcHHHHHHHHHHHHhc--CCceEEEccc-cc----chhhhHHH---HHHHHHHH
Q 008576 287 SPAHV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC-TG----FAVNRMFF---PYTQAAFL 346 (561)
Q Consensus 287 ~P~~~----------~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~-~G----~i~nrl~~---~~~~ea~~ 346 (561)
||-.+ .|--.|+... +..+.+.+.+++..+ ...|+++.+. .. +..|-.++ .++||...
T Consensus 148 NPEFLREG~Av~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ 225 (414)
T COG1004 148 NPEFLREGSAVYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIAN 225 (414)
T ss_pred ChHHhcCcchhhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 1111244332 222455555555543 4566665542 22 23455444 46889888
Q ss_pred HHHc-CCCHHHHHHHH
Q 008576 347 LVER-GTDLYLIDRAI 361 (561)
Q Consensus 347 l~~~-G~~~~~ID~a~ 361 (561)
+.+. |++..+|-..+
T Consensus 226 ice~~g~D~~~V~~gI 241 (414)
T COG1004 226 ICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHhCCCHHHHHHHc
Confidence 8874 78888887765
No 133
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=5.4e-11 Score=117.69 Aligned_cols=93 Identities=23% Similarity=0.173 Sum_probs=83.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|||++++++.|.++|+++++.+ +
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP------------------------------------Q 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.....++++++..|...+..++. +|+++++.+|++|+.
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 3777889999887777899999999988888777 999999999998765
No 134
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=5.7e-11 Score=117.72 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=85.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS------------------------------------S 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~ 130 (561)
.+...+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 37778999999888888999999999999999999999999999999874
No 135
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.18 E-value=3.9e-11 Score=119.07 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=81.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+++.++|++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS------------------------------------P 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ....+..|...+..++.|+|+++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 3777888888876443 345556677889999999999999999999988764
No 136
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.17 E-value=6.2e-11 Score=118.53 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=82.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS------------------------------------P 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|+.++.... ..+...+.|.+.+..++.|+|+++++.+|++||+++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 367788888877643 34555567888889999999999999999999987653
No 137
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=8.2e-11 Score=117.91 Aligned_cols=97 Identities=23% Similarity=0.179 Sum_probs=81.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++++.++|++|+..+ +
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS------------------------------------R 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHh-HHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~~-~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ++++.+..|..... .++.|+|+++++.+|++||+++.
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3777889999877654 68888887875432 35789999999999999987654
No 138
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.16 E-value=7.4e-11 Score=117.22 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=83.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc-CCh-HHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~-~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 367788998886543 333 57788899999999999999999999999988764
No 139
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.15 E-value=8.7e-11 Score=117.57 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=82.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||+++|++.+.+++++|+..+ +
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN------------------------------------P 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHH--HHhHHhcCH-HHHHHHHHHHhhcc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~--~~~~l~~s~-~~~~~~~aF~~kr~ 130 (561)
.+...+|++++.....+++++++.|.. .+..++.++ |+++++++|++||.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 477889999999888889999888764 355678898 89999999999987
No 140
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.15 E-value=6.7e-11 Score=120.60 Aligned_cols=126 Identities=21% Similarity=0.400 Sum_probs=95.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.+||+|||+|.||.++|..++..|+ +|+++|++++.++. +.++...... ......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~------~~ld~~~~~~------~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG------KALDISHSNV------IAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH------HHHHHHhhhh------ccCCCeEEEECCCHHHhC
Confidence 4699999999999999999999996 99999999987532 1122222110 111123567678889999
Q ss_pred CCCEEEEec-------------------cCChhhHHHHHHHHHhhcCCC-ceeeecCCCCCHHHHHhhccCc-cceeccc
Q 008576 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (561)
Q Consensus 226 ~aDlVieav-------------------~e~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (561)
+||+||+++ .++..+++++++++.+++++. .|++||++.+....++.....| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 557778999999999999764 4667999888887777766654 8888875
No 141
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.15 E-value=5.5e-11 Score=108.79 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=76.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV 227 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~a 227 (561)
||+|||+|.||.++|..|+.+|++|++|.++++.++...+ ........++ ......+..++|++ .++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~--------~~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINE--------TRQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHH--------HTSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH--------hCCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 7999999999999999999999999999999977765332 1111111111 11223566788884 58999
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
|+||.+|| ....+++++++.++++++++|++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 5567899999999999999888887776
No 142
>PLN02921 naphthoate synthase
Probab=99.15 E-value=9.2e-11 Score=119.57 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=80.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||++++++++.++|++|+..+ +
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------p 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS------------------------------------P 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~ 134 (561)
.+...+|++++..... .......|...+..++.|+|+++++.+|++||+++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 3777889988876543 3333344557888899999999999999999987753
No 143
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.14 E-value=1.8e-09 Score=104.49 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=107.2
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+||| +|.||.+++..|+++|++|+++++++++++........ .....+. . ..+..+++.+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~-~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS-D--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC-C--------ceEEEeChHHHHhc
Confidence 4799997 89999999999999999999999999887653321110 0000110 0 01122233456789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-----------------HHHHhhccCccceecccccCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~P~ 289 (561)
+|+||.|+| .....++++++.+.+.. ++|++.+.++.. ..+++.++...+++....+.|.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998 45566777787766654 777777666654 3455555433677776554332
Q ss_pred CC-------CCeEEEEeCCCCcHHHHHHHHHHHHhc-CCceEEEcc
Q 008576 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (561)
Q Consensus 290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 327 (561)
.. .+....+.|+ +++..+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345553 566888899999999 999988764
No 144
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=4.3e-10 Score=115.81 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=97.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
.+||+|||+|.||.+||..|+++|++|++|+++++..+..... ...+..-+. .....++..++++ +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~--------~~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE--------RENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh--------CcccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 4589999999999999999999999999999998876653311 001100000 0011123344555 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-----HHHHHhhccC----ccceecccccCCCC---CCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS----KDRIVGAHFFSPAH---VMP 293 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~----~~r~ig~h~~~P~~---~~~ 293 (561)
+||+||+|+|+. . .++++ +.+++++++++.+.++. ...+++.+.. ...+++ -|..+.. ..+
T Consensus 74 ~aD~Vi~~v~~~-~-~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSK-A-LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchH-H-HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 999999999965 2 23444 44567777766655544 3344444321 111111 1111111 112
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (561)
.+.++.+ .+++.++.+++++...|..++...|.
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di 179 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDR 179 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3344444 47888999999999999877754443
No 145
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.13 E-value=1.2e-10 Score=115.42 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=78.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++++.+++++++..+ +
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~------------------------------------~ 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS------------------------------------P 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++......... ...|...+..++.|+|+++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 253 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF 253 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence 37778888888764432111 12355678889999999999999999987754
No 146
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.12 E-value=8.5e-10 Score=109.43 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=103.7
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCEEEEeccCChh
Q 008576 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (561)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e~~~ 239 (561)
||..|.++| ++|+.+|++++.++.+. +.|.++.. .++.+.+.+||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~~-----------~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDEA-----------STDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSEE-----------ESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeeec-----------cCCHhHhcCCCEEEEcCC--HH
Confidence 678888998 68999999999887654 45554321 222466899999999999 77
Q ss_pred hHHHHHHHHHhhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCC------------CCCeEEEEeCCCCcH
Q 008576 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (561)
Q Consensus 240 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lveiv~~~~t~~ 305 (561)
...++++++.++++++++|+..+|.. ++..+.+..+...+|+|.||+..+. ....+.++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 78899999999999999998877764 3456666666578999999987551 256788999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEc
Q 008576 306 QVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.++.+..+++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999888875
No 147
>PLN02712 arogenate dehydrogenase
Probab=99.12 E-value=8.8e-10 Score=122.56 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=108.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
..+||+|||+|.||.++|..|...|++|++||++... +.+. +.|. ...++.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHH
Confidence 3468999999999999999999999999999998642 2211 1221 12233333 3
Q ss_pred C-CCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCC--CCHHHHHhhccCccceecccccCCCCCCC-------
Q 008576 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP------- 293 (561)
Q Consensus 225 ~-~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~~------- 293 (561)
. .||+||.|+| ......++.++.. .+++++||++.+|+ .++..+...++...+|++.||+.++....
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 4566677777765 57789999887776 45566666665556799999998766431
Q ss_pred -eE--EEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 -LL--EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 -lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
++ .++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1223344455667777899999999888886
No 148
>PRK08321 naphthoate synthase; Validated
Probab=99.12 E-value=1.5e-10 Score=117.42 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=82.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++|+..+ +
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS------------------------------------P 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++..... ..+....|.+.+..++.++++++++.+|++||+++.
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 3777888988776543 344455688999999999999999999999998765
No 149
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.10 E-value=8.1e-10 Score=109.80 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=110.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+||+|||+|+||++|+..|.++|. +|+++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999999873 499999887531 00 001112233
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCe-EEEEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~~~ 302 (561)
+.+||+||.|++ +....+++.++.++++++ +|+|..+++.++.+...++...+++...|+.|...... ..++++..
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999997 677889999998877654 56788889999999887765556778888888766544 44556777
Q ss_pred CcHHHHHHHHHHHHhcCCceEE
Q 008576 303 TSPQVIVDLLDIGKKIKKTPIV 324 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~ 324 (561)
.+++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8889999999999999976655
No 150
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=1.9e-10 Score=114.37 Aligned_cols=93 Identities=23% Similarity=0.217 Sum_probs=78.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~------------------------------------~ 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA------------------------------------P 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 3677788888776443 345566788889999999999999999987653
No 151
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.08 E-value=1.8e-10 Score=117.00 Aligned_cols=122 Identities=22% Similarity=0.380 Sum_probs=89.4
Q ss_pred EEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCC
Q 008576 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 228 (561)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +.. ++.... ........++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~-----~dl~~~------~~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKA-----LDISQA------APILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHH-----HHHHHh------hhhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999977543 221 111100 00111123566667788899999
Q ss_pred EEEEec--------------cCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHHhhccC-ccceecc
Q 008576 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 229 lVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
+||+++ +++..+++++++++.++++++. |++||.+.+....++..... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999976 6788899999999999998777 46688887777676665554 5677775
No 152
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.07 E-value=5.9e-10 Score=113.69 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=92.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||+|.||.+||..|+.+||+|++||+++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 58999999999999999999999999999998530 11 23568
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCCHH------HHHh-hccCccceecccccCCCC------CC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VM 292 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~------~l~~-~~~~~~r~ig~h~~~P~~------~~ 292 (561)
+|+||.|+|. ...+.+++++.++ ++++++|++.++++.+. ++.. .... .+++. +..|.. ..
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCC
Confidence 9999999996 3677788888764 67788888766644432 2211 1111 11210 012211 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
+...++.+ .+.+..+.+++++...+..++..+|.-|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22333333 3688899999999999888876665333
No 153
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=4.1e-10 Score=114.03 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhcCC-hHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCCCC
Q 008576 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~-~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k~~ 135 (561)
.++..+|++++...... ..+....|...+..++.|+++++++.+|++||++...+
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 37778899998764322 22344668888999999999999999999999877643
No 154
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=3e-10 Score=112.30 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=80.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++++.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP------------------------------------P 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|++++... .++.+.+..|.+.+..++.++++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 36777888887654 468888999999999999999999999999874
No 155
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.06 E-value=4.1e-10 Score=115.00 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=92.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..++..| .+|+++|++++.++. .. ++...... ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g-~~-----lDl~~~~~------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQG-KA-----LDLKHFST------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchh-HH-----HHHhhhcc------ccCCCeEEEeCCCHHHhCC
Confidence 49999999999999999999999 699999999877542 21 11111100 0011125555678889999
Q ss_pred CCEEEEec--cCCh------------hhHHHHHHHHHhhcCCC-ceeeecCCCCCHHHHHhhccCc-cceeccc
Q 008576 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (561)
Q Consensus 227 aDlVieav--~e~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h 284 (561)
||+||+++ |+++ .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 6666 78999999999998777 4667888877766666655555 7888765
No 156
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.05 E-value=2.1e-09 Score=111.47 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=104.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-C---HHHHHhhhcccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-T---QEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~---~~~~~~~~~~i~~~~~~~ 222 (561)
++||+|||+|.||..+|..|+++|++|+++|+++. .+... +.|.. . .........++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 11210 0 000000112344455666
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhccCccceecccccC-----CCCC--CCe
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~~-----P~~~--~~l 294 (561)
.+.++|+||+|++.. ...++++++.+.++++++|++.++++.. ..+...++....+.|.+++. |... ...
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 688999999999853 4567889999999999988887777764 45666554333334444432 2110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (561)
-.+.-+. .+.++.+.++++..|......+|..
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhH
Confidence 0111121 2446788889998888777777643
No 157
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=4.4e-10 Score=111.90 Aligned_cols=95 Identities=22% Similarity=0.220 Sum_probs=83.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+||+ ++.+.+.+++++++..+ +
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~------------------------------------~ 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS------------------------------------P 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999995 47889999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.....++++++..|.+.+..++.++|+++++.+|++||++..
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778899999888888999999999999999999999999999999987653
No 158
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=5e-10 Score=110.43 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=82.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||.+ +++++.|.++|++++..+ |
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~----------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-F----------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999964 467889999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 37778899999887788999999999999999999999999999999988754
No 159
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.05 E-value=6.5e-10 Score=109.75 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=78.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHH-HHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|+|||++++|+||+++||||+|+|+. .+.+.++ +++++..+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~------------------------------------ 193 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS------------------------------------ 193 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC------------------------------------
Confidence 57999999999999999999999753 3566676 67888742
Q ss_pred CCcHHHHHHHHHHhhcCChHHHH-HHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l-~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
+.++..+|++++.....++++++ ..|.+.+..++.|+|+++++++|++||++..
T Consensus 194 p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 194 ASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 24777889999888777888776 4788889999999999999999999998754
No 160
>PLN02712 arogenate dehydrogenase
Probab=99.04 E-value=6.3e-09 Score=115.83 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=105.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c-
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 224 (561)
.++|+|||+|.||.++|..|.+.|++|+++|++... +.+. +.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2111 112 112233333 3
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHH-hhcCCCceeeecCCCC--CHHHHHhhccCccceecccccCCCCC-----CCeEE
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lve 296 (561)
.+||+||.|+| .....+++.++. +.++++++|++.+|.. ++..+...++....|+++||+..+.. .....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 456677888875 5678899888766544 23445555554457999999865541 11112
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567788899999999999886
No 161
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=3.1e-10 Score=111.99 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=81.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|| +++++++.++|++++..+ +
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~------------------------------------~ 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP------------------------------------R 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 57899999999999999999999 679999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc-CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~-~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 477889999998877 789999999999999999999999999999874
No 162
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.03 E-value=5.4e-10 Score=114.02 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754321111111 00 011123566667888899
Q ss_pred CCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHHHHHhhccC-ccceecc
Q 008576 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (561)
Q Consensus 226 ~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~ 283 (561)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3566889999999999986653 44466554443333333222 3556654
No 163
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.03 E-value=2.9e-10 Score=112.14 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=84.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|+|++++.+.+.+++++++..+ |
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P----------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999852 1
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~k 128 (561)
.+...+|+.++........+.+..|.+.+..++.++|+++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 367788999999888889999999999999999999999999999987
No 164
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=5.8e-10 Score=111.28 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=74.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-Q----------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhc---CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~---~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.... .+++..+..|. .++.|+++++++.+|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 366778888876422 23444444443 46789999999999999988764
No 165
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.01 E-value=7.7e-10 Score=109.59 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=79.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|+|++++|+||+++||||+|||+++. .+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~------------------------------------p 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN------------------------------------K 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999986553 5777888888742 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|++++.. ..+++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 4777888888865 446888999999999999999999999999999987643
No 166
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.00 E-value=1.9e-08 Score=107.48 Aligned_cols=203 Identities=15% Similarity=0.204 Sum_probs=125.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh----h-ccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT----I-SLLTGVL 219 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~-~~i~~~~ 219 (561)
++||+|||+|.+|..+|..|+.+| ++|+++|+++++++...+... .+.+...++. . .++.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~----------~~~e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL----------PIYEPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC----------ccCCCCHHHHHHHhhcCCEEEEc
Confidence 468999999999999999999885 789999999999877442210 0111111221 1 2477888
Q ss_pred ccc-ccCCCCEEEEeccC-------------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH---HHHhhccCccceec
Q 008576 220 DYE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG 282 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~e-------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig 282 (561)
+++ .+++||++|.|||. |......+.++|.++++++++|+ ..|+.|+. .+...+....+ |
T Consensus 71 ~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g 147 (473)
T PLN02353 71 DVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (473)
T ss_pred CHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--C
Confidence 875 58999999999963 23366778888999999888765 34444433 33222211000 1
Q ss_pred ccc---cCCCCCC---------CeEEE-EeCC--CCcHHHHHHHHHHHHhcCC-ceEEEcc-c---ccchhhhHH----H
Q 008576 283 AHF---FSPAHVM---------PLLEI-VRTN--QTSPQVIVDLLDIGKKIKK-TPIVVGN-C---TGFAVNRMF----F 338 (561)
Q Consensus 283 ~h~---~~P~~~~---------~lvei-v~~~--~t~~e~~~~~~~l~~~lGk-~~v~v~d-~---~G~i~nrl~----~ 338 (561)
..| ++|-... ..--| +.+. .+.++..+.+..++..+-+ .++.+.+ . -..++.+.+ .
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I 227 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI 227 (473)
T ss_pred CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence 111 2332211 11113 3443 2225678888888888742 4454443 1 122333332 3
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008576 339 PYTQAAFLLVE-RGTDLYLIDRAIT 362 (561)
Q Consensus 339 ~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (561)
+++||-..+.+ .|+++.+|-.++.
T Consensus 228 af~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 228 SSVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 66889888876 5899999998886
No 167
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=9.8e-10 Score=109.23 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=83.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+++|++++|+||+++||||+|++ ++.+.+.+++++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~------------------------------------~ 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS------------------------------------P 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999974 58999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.+...+|+.++.....++++.++.|...+..++.++++++++.+|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 4778899999998888899999999999999999999999999999998764
No 168
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.99 E-value=1.9e-08 Score=93.92 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=103.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
|++++|+|+|.||.++|..|+++||+|++-.++.+. ++.+.+. ....++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 579999999999999999999999999999665544 3332211 112345555667789
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC----------------CHHH-HHhhccCccceecc-ccc-
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLNL-IGERTYSKDRIVGA-HFF- 286 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~----------------~~~~-l~~~~~~~~r~ig~-h~~- 286 (561)
.||+||.+|| ......+++++..... +.|+++.|-.+ +.++ +++.++.. +++.. |-.
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 6667788888887766 77777554431 1222 33444443 44432 111
Q ss_pred -----CCCCC-CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 287 -----SPAHV-MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 287 -----~P~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
+-++. ......+++ -+.+..+.+..+.+.+|..++.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 11111 344445565 3778899999999999999998864
No 169
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.99 E-value=6.6e-08 Score=95.75 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=95.8
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-ccccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~~aDlVieav~e~ 237 (561)
|.+||.+|+++||+|++||+++++++... .+.+.+.|. ...++ .+.+++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 111223332 12233 35678999999999955
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhcc-------CccceecccccC-CCCCCCeEEEE------eCCCC
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-------SKDRIVGAHFFS-PAHVMPLLEIV------RTNQT 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-------~~~r~ig~h~~~-P~~~~~lveiv------~~~~t 303 (561)
. ..++++..+.+.++++++|+ ++||+++..+...+. ..-.+..+||-. |-....-.-++ .-...
T Consensus 93 a-aV~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 K-GTFSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred H-HHHHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 4 44556677888889998775 567777665544332 123344555542 11111111122 22345
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+++.+++..++.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 88999999999999999999885
No 170
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.99 E-value=5.6e-10 Score=114.92 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=84.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHH------------HhhccCCCchhh------hcccCCCCCchhH
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL------------DILEHRRPWVAT------LYKTDKIEPLGEA 62 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~------------~la~~~~p~~~~------~~~~~~~~~~~~~ 62 (561)
|+|||++++|++|+++||||+|||++++.+...++++ .+.....+.... ...-+-+... ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 5799999999999999999999999888765333221 011100000000 0000000000 00
Q ss_pred HHHHH--------HHHHHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH-hh-ccC
Q 008576 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (561)
Q Consensus 63 ~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~-~k-r~~ 131 (561)
..++. .+.+.+++- .+++.++..+|++++.+...+++++++.|...+..++.|+|+++++++|+ +| |+|
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 11111 122333332 24677999999999998888999999999999999999999999999997 65 555
Q ss_pred CC
Q 008576 132 SK 133 (561)
Q Consensus 132 ~k 133 (561)
+.
T Consensus 322 ~~ 323 (342)
T PRK05617 322 KW 323 (342)
T ss_pred CC
Confidence 43
No 171
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=1.3e-09 Score=107.14 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=78.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++++|+||+++||||+|++ + +.+.+++++++..+ +
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~------------------------------------~ 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA------------------------------------P 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC------------------------------------H
Confidence 579999999999999999999975 3 37899999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
.+...+|+.++.. .+++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 3777888988765 56899999999999999999999999999999987654
No 172
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=1.1e-08 Score=105.70 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-c
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (561)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+. .......+.. .....++..+++++ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~--------~~~~~~l~~~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDN--------HRNSRYLGND-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhc--------CCCcccCCCC-cccCCCeEEECCHHHH
Confidence 34679999999999999999999999 799999999876653311 0000000000 01112455566664 5
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH------H-HHHhhccCccceecccccCCCC---CCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRIVGAHFFSPAH---VMP 293 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~-~l~~~~~~~~r~ig~h~~~P~~---~~~ 293 (561)
+.++|+||.||| ....+++++++.+.++++++++|.+.++.. + .+.+.++.....+-..|..+.. ..+
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~ 152 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA 152 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence 789999999998 667888999999999888877776666654 2 3444343211111111211111 122
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchh
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~ 333 (561)
...++.+ .+++..+.+..++..-+..+....|.-|-..
T Consensus 153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~ 190 (341)
T PRK12439 153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEM 190 (341)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHH
Confidence 2223333 2677788888888877766666667555433
No 173
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.97 E-value=2.3e-09 Score=100.59 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=72.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHH----HHhh--hccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEK----FEKT--ISLLTGVL 219 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~----~~~~--~~~i~~~~ 219 (561)
|||+|||+|.+|..+|..|+.+||+|+.+|+|++.++...+ |.. .+.. +.+. -+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence 59999999999999999999999999999999998876442 211 1111 1111 24677888
Q ss_pred cccc-cCCCCEEEEeccC--------ChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 220 ~~~~-l~~aDlVieav~e--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
+.+. +.+||++|.|||. |.....++.++|.+.+.++.+|+ .-|++++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8765 8999999999964 34567788889999999988775 45555544
No 174
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.94 E-value=2.2e-09 Score=89.63 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=68.0
Q ss_pred EEEEEcCccchHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
||+|||+|.||.+|+..|..+| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988764321 11 011111334567
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++|+||.||| +....++++++ ....++.+++|.+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999998 66778899999 66778888887654
No 175
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.91 E-value=3.1e-09 Score=104.89 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=80.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.++|+++++.+ +
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP------------------------------------R 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF 125 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF 125 (561)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++...
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 377789999998888899999999999999999999999998864
No 176
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.89 E-value=3.3e-08 Score=105.14 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=118.7
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc----cCCCCEEEEe
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----l~~aDlViea 233 (561)
||..||..|+++|++|++|||++++.+...+. .+. . ..+....++++ +..+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988764320 110 0 01223344433 3458999999
Q ss_pred ccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhccCccceecccccC-CCCC-------CCeEEEEeCCCC
Q 008576 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPLLEIVRTNQT 303 (561)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-P~~~-------~~lveiv~~~~t 303 (561)
||....+ .+++..+.+.+.++.||+..+++.+-+ +.++.+.. .|+||+. |+.. ++ .++.| .
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 9977554 556688888888888887654443332 33333321 2666653 4432 33 34544 3
Q ss_pred cHHHHHHHHHHHHhcCCce-------EEEcc-cccc---hh-hhHHHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AV-NRMFFPY---TQAAFLLVE--RGTDLYLIDRAIT 362 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~-nrl~~~~---~~ea~~l~~--~G~~~~~ID~a~~ 362 (561)
++++++.++++++.++..+ .++++ ..|. ++ |-+.... +.|++.+.+ .|++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77775 3343 33 4444433 579998887 3889999988885
No 177
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.89 E-value=6.3e-09 Score=90.74 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-.||+|||+|.+|..++..|.++||+|..+ .++.+..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 469999999999999999999999998755 67776665533211 1111122224578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhh--cCCCceeeecCCCCCHHHHHhhccCccceecccc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~ 285 (561)
++|++|.+||++ ....+.++|... ..+++||+=.+.+++.+-+.........+..+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999976 567888888876 6788888754445666666555555556666775
No 178
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.86 E-value=2.6e-09 Score=111.43 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHH----------HHhhcc-CCCchh-------hh-cccCCCCCchh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEH-RRPWVA-------TL-YKTDKIEPLGE 61 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~la~~-~~p~~~-------~~-~~~~~~~~~~~ 61 (561)
|+|||++|+|++|+++||||+|||++++.+.+.+++ +++... ..++.. .. ...+-++.. .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 579999999999999999999999888876322221 111100 000000 00 000000000 0
Q ss_pred HHHHHHH------------HHHHHHhh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhc---CHHHHHHHHHH
Q 008576 62 AREIFKF------------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (561)
Q Consensus 62 ~~~~~~~------------a~~~~~~~-~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~~~aF 125 (561)
....++. +.+.++.- .+++.++..+|++++.+...+++++++.|......++. ++|+++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 0111111 22233332 34677899999999998888999999999888887777 99999999999
Q ss_pred H-hh-ccCCC
Q 008576 126 F-AQ-RGTSK 133 (561)
Q Consensus 126 ~-~k-r~~~k 133 (561)
+ +| |+|+-
T Consensus 327 lidK~r~P~w 336 (379)
T PLN02874 327 VIDKDNAPKW 336 (379)
T ss_pred EEcCCCCCCC
Confidence 7 77 55544
No 179
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.85 E-value=1.5e-08 Score=104.58 Aligned_cols=173 Identities=14% Similarity=0.053 Sum_probs=104.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+||+|||+|.||+++|..|+.+| ++|.+|.++++.-.+ .+.+.+.....+...-++ -.+..++..++|
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~--~~Lp~ni~~tsd 86 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGE---KLSDIINTKHENVKYLPG--IKLPDNIVAVSD 86 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccch---HHHHHHHhcCCCcccCCC--CcCCCceEEecC
Confidence 68999999999999999999998 899999999863100 001112211122111111 013356777888
Q ss_pred cc-ccCCCCEEEEeccCChhhHHHHHHHHHh--hcCCCceeeecCCCCC--------HHHHHh-hccCccceecccccCC
Q 008576 221 YE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGE-RTYSKDRIVGAHFFSP 288 (561)
Q Consensus 221 ~~-~l~~aDlVieav~e~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~--------~~~l~~-~~~~~~r~ig~h~~~P 288 (561)
++ .+++||+||.+|| ++..+++++++.+ .++++++++|.+.++. ++++.. .+..+--++. -|...
T Consensus 87 l~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~A 163 (365)
T PTZ00345 87 LKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANVA 163 (365)
T ss_pred HHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCHH
Confidence 74 5899999999999 7788999999988 7777777777665543 333332 2322111111 11100
Q ss_pred C---CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEccccc
Q 008576 289 A---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (561)
Q Consensus 289 ~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (561)
. ...|...++.+ .+.+....+++++..--.+++...|.-|
T Consensus 164 ~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 164 NDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred HHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 0 11233334444 3677777788887754445555556443
No 180
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.82 E-value=2.9e-08 Score=101.83 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred EEEEEcCccchHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008576 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (561)
||+|||+|.||.++|..|+.+| ++|++|.+ +++..+. +....+....-+. -.+..++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~--------in~~~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI--------INTTHENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH--------HHhcCCCccccCC--CcCCCCe
Confidence 6999999999999999999999 99999998 3333222 1111111111111 0123456
Q ss_pred ccccccc-ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 216 ~~~~~~~-~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
..++|++ .+.+||+||.||| .+..+.+++++.++++++.+++|.+.++..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 7778875 4799999999999 6688899999999998888888877665443
No 181
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1e-08 Score=101.60 Aligned_cols=92 Identities=24% Similarity=0.234 Sum_probs=80.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ +
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN------------------------------------P 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcC---HHHHHHHHHHHhh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQ 128 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s---~~~~~~~~aF~~k 128 (561)
.+...+|++++.....+++++++.|...+..++.| ....+....|.++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 37788999999888888999999999999999988 5666666677665
No 182
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.82 E-value=3.4e-09 Score=96.96 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCC----chHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (561)
+|+|||.+++.||..+||||+||... ...+.|+++|++|..
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp----------------------------------- 232 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILP----------------------------------- 232 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhcc-----------------------------------
Confidence 58999999999999999999999875 345567788887766
Q ss_pred CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 77 ~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
++|.|+..+|-+|+.+.+.++..++..|..-+++...+.|--+++.+|.+||+|.-
T Consensus 233 -~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 233 -QGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred -CCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 34569999999999999999999999999999999999999999999999998864
No 183
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.82 E-value=7.2e-09 Score=105.12 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=78.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +.. ++.. ..+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~~-~~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDMY-EAS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhhh-hhh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 8999999766432 221 1111 111 01111246777888888999
Q ss_pred CCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee--ecCCCCCHHHHHhhcc-Cccceecc
Q 008576 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTY-SKDRIVGA 283 (561)
Q Consensus 227 aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~-~~~r~ig~ 283 (561)
||+||.++. .|..+.+++.+++.++.+ +++|+ ||...+-...+..... .+.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999986 244677777788888864 44333 4433222222222222 23566664
No 184
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.82 E-value=1.3e-08 Score=101.11 Aligned_cols=93 Identities=30% Similarity=0.425 Sum_probs=81.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (561)
|++||+.++|+||+++||||++|++ +++++.|.+++++++. .|
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~---------------------------------- 205 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA--PP---------------------------------- 205 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CH----------------------------------
Confidence 5799999999999999999999985 6999999999999886 12
Q ss_pred CCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccC
Q 008576 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (561)
Q Consensus 80 ~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~ 131 (561)
.+...+|+.++.+...++++.+..|...+...+.++|+++++.+|++ |++
T Consensus 206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 26778889988887767889999999999998899999999999999 654
No 185
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.80 E-value=2.7e-09 Score=97.84 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=67.2
Q ss_pred cccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (561)
.+.+|..+|+||++|||||.|||.++|++++.+||+++.+.+ | .
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P-----------------------------------~ 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-P-----------------------------------T 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-h-----------------------------------H
Confidence 467899999999999999999999999999999999999852 3 2
Q ss_pred cHHHHHHHHHHhhcCChH--HHHHH-HHHHHhHHhcCHHHHHHHHHHHhhccCCC
Q 008576 82 HPIVCIDVVEAGVVSGPR--AGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (561)
Q Consensus 82 A~~~~~~~v~~~~~~~~~--~~l~~-E~~~~~~l~~s~~~~~~~~aF~~kr~~~k 133 (561)
|. ++++.+.+.+-+ .++.. .-.+-.-...|+|++|++.+|++||+|..
T Consensus 225 Al----R~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 225 AL----RMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred HH----HHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 44 445554443321 22211 11112224579999999999999998865
No 186
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5.5e-07 Score=84.62 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=125.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|+.||+|.||..++..|.+.||+|+.||+|+++.+.+. ..+......+++.. +.+..-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el~---------~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDELV---------AKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHHH---------HhcCCC
Confidence 4799999999999999999999999999999999988754 22311111111111 234555
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCC-------CCeEEEEeC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLLEIVRT 300 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~lveiv~~ 300 (561)
-.|-..||- -++..++++++.+.+.++-+|+....+..-..+...-. -.-.|+||+.--.. ....-++.|
T Consensus 61 r~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~--l~~kgi~flD~GTSGG~~G~~~G~~lMiGG 137 (300)
T COG1023 61 RIVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL--LAEKGIHFLDVGTSGGVWGAERGYCLMIGG 137 (300)
T ss_pred cEEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH--HHhcCCeEEeccCCCCchhhhcCceEEecC
Confidence 778888884 34778999999999999998887655544333221110 11238898742111 112224455
Q ss_pred CCCcHHHHHHHHHHHHhcCCc---eEEEcc-cccc----hhhhHHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 008576 301 NQTSPQVIVDLLDIGKKIKKT---PIVVGN-CTGF----AVNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~---~v~v~d-~~G~----i~nrl~~~~---~~ea~~l~~~G---~~~~~ID~a~~ 362 (561)
+.+.++.+.++++.+..- -.+++. ..|- |-|-|-+.+ +.|.+.++++. ++.++|-++++
T Consensus 138 ---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 138 ---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred ---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 789999999999987542 234554 3453 456665554 46888888875 48888888887
No 187
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.76 E-value=1.6e-07 Score=96.72 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=72.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccccc-cc-C
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYE-SF-K 225 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~-~l-~ 225 (561)
||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..... +.. ......+..+++++ .+ .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPT---CHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCC---CcCCCCeEEeCCHHHHHhC
Confidence 79999999999999999999999999999998776543211 00000 100 00112344455554 34 5
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeecCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI 265 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~ 265 (561)
++|+||.||| .....++++++.+ .+.+++.+++.++++
T Consensus 71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999999998 5567788899988 888887666556655
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.73 E-value=1.5e-07 Score=95.90 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=77.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||+.+|..|+++|++|++++++++.++... +.|... .++ ....+..+++.+.+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~~~~~---~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRLEDGE---ITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcccCCc---eeecccCCCChhHcCC
Confidence 3799999999999999999999999999999887765432 112100 000 0011222344444589
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~ 275 (561)
+|+||.|++.. ....+++++.+.+.++++|++...++. ...+...++
T Consensus 67 ~d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 67 QDLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CCEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 99999999843 457788899988888887777666665 344554443
No 189
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.68 E-value=9.4e-09 Score=102.44 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc-CcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAE-GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPC 536 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~-gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~ 536 (561)
..++.++|++.++++++.+++.| |+ +|..+|... .-||||+ ||++++|..|++...+.-..+...++++
T Consensus 171 c~gf~v~r~l~~y~~~~~~~l~e~g~--~p~~iD~~~-t~fGf~~---g~~~L~d~~gfdv~eal~~gl~~~~~~r---- 240 (380)
T KOG1683|consen 171 CCGFRVNRLLPPYTIGLNELLLEIGA--DPWLIDSLI-TKFGFRV---GERALADGVGFDVAEALAVGLGDEIGPR---- 240 (380)
T ss_pred CCceEEEecccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCccc---cHHHHhhccCccHHHHHhhccchhccch----
Confidence 34689999999999999999998 65 599999977 5599999 9999999999999887776666665555
Q ss_pred HHHHHHHHcCCCcccCCccccccC
Q 008576 537 AFLAERAGKGATLVRNLKLFFSYL 560 (561)
Q Consensus 537 ~~l~~~~~~g~~g~~~g~Gfy~y~ 560 (561)
+.++++++|+.|++||+|||.|.
T Consensus 241 -~~eel~~~~~~g~kT~kg~y~y~ 263 (380)
T KOG1683|consen 241 -IEEELLEKGRAGIKTGKGIYPYA 263 (380)
T ss_pred -hHHHHHHHHhhhhhccCcccccc
Confidence 78899999999999999999996
No 190
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.67 E-value=4.1e-07 Score=85.76 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=81.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+ |.||.-++..|.++|+.|++ .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 38999998 99999999999999999861 46
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCC-----CeEEEEeCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN 301 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-----~lveiv~~~ 301 (561)
||+||.|+| .....++++++. .+|+..+|... .+.+. ..+|+|.||+..+... ..+-+ ..+
T Consensus 32 ~DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 899999999 445556666553 25666666543 12221 3479999998653321 22333 356
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 778888889999987 77777665
No 191
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.65 E-value=2.6e-07 Score=94.18 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=94.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|...........-.....++.++ ..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 4899999999999999999999999999999 66655422 1121000000000001112334433 488
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC-HHHHHhhccCcccee-ccccc-----CCCCC---C-CeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIV-GAHFF-----SPAHV---M-PLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~i-g~h~~-----~P~~~---~-~lv 295 (561)
+|+||.|++.. ...++++++.+.+.++++|++...++. ...+...++. .+++ |..++ .|-.. . ..+
T Consensus 69 ~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 99999999843 346778888888888887776555665 3445544432 2333 22322 22111 0 011
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+-.-+....+..+.+..++...|.......|
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 11111222345566677777777755555445
No 192
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.62 E-value=3.9e-07 Score=93.25 Aligned_cols=170 Identities=10% Similarity=0.119 Sum_probs=98.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l 224 (561)
..+||+|||+|.||+.+|..|+++|++|+++.+++. +... +.|.. ....-......+...++.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhc
Confidence 346899999999999999999999999999999753 2111 11210 000000000112223344457
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccCccceec-ccc-----cCCCC---C-CC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHF-----FSPAH---V-MP 293 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig-~h~-----~~P~~---~-~~ 293 (561)
..+|+||.||+.. ...++++.+.+.+.++++|++...++... .+...++. +++++ ..+ ..|.. . ..
T Consensus 71 ~~~D~vilavK~~--~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTT--ANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCC--ChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCC
Confidence 7899999999743 23567888888888888777766677654 45555433 34443 222 22321 0 01
Q ss_pred eEEEEeCCCCc-----HHHHHHHHHHHHhcCCceEEEcccccc
Q 008576 294 LLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (561)
Q Consensus 294 lveiv~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (561)
-+.+-.....+ .+..+.+..+++..|.......|....
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~ 190 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQA 190 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHH
Confidence 11111111112 455666777788877666555554443
No 193
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.61 E-value=5e-08 Score=88.65 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||.||+++||+.-|||.+|||+++|..++.+++++|-..++.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra----------------------------------- 232 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA----------------------------------- 232 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-----------------------------------
Confidence 789999999999999999999999999999999999988774211
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.....|+-.+....++-.+++..-.+....-++-.|++|+|.+|++||.+.
T Consensus 233 -v~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 233 -VISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 122345556666666666777777777777778889999999999999774
No 194
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.59 E-value=9.9e-08 Score=95.08 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=73.3
Q ss_pred EEEEcC-ccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-ccc
Q 008576 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (561)
Q Consensus 150 V~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (561)
|+|||+ |.||.++|..++..| .+|+++|++++.++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776544433222110 1135666677 578
Q ss_pred cCCCCEEEE--------------eccCChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVie--------------av~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++||+||+ .+.++..+++++.+++.+++ ++++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 55677889999999999998 555443
No 195
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=1.1e-07 Score=95.66 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=70.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP------------------------------------P 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 1
Q ss_pred CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHhHHh-cCHH
Q 008576 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~-~~~~~l~~E~~~~~~l~-~s~~ 117 (561)
.+...+|+.++..... ++++++..|.+.+.... ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 3777889999887765 68999999999888877 6666
No 196
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.50 E-value=2.2e-07 Score=88.20 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=71.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
..||+|||+|.||+.+|..|++.|+ +|+++|.+ ++.+.+-.-.. ...|....+.....+.++.+..+++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~-------~~iG~~Ka~~~~~~l~~inp~~~i~ 93 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-------SQVGEPKTEALKENISEINPYTEIE 93 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCCh-------hhCCCHHHHHHHHHHHHHCCCCEEE
Confidence 3589999999999999999999999 69999999 65554311000 0112111222233333333322221
Q ss_pred -------------ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 223 -------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 223 -------------~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.++++|+||+| .++.+.|..+++++....+...+++
T Consensus 94 ~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 94 AYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred EeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 6899999999999988877766665
No 197
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=8.4e-06 Score=82.16 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=125.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc---
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (561)
...|+|||+|+||..+|..++++|+.|.+|+|+.++.++..+. ++. ..+|.+..++++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence 3579999999999999999999999999999999998875431 110 013444444433
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceeccccc-------CCCCCC
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFF-------SPAHVM 292 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~-------~P~~~~ 292 (561)
++.---|+..|-.. .....++++|.+++.++-||+....+...+. ..+.....-.|+|+.-- +.|+
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 45556667766433 2345788999999999999987655544332 22333344556665432 2233
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEEc-ccccc----hhhhHHH---HHHHHHHHHHHcC--CCHHH
Q 008576 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVG-NCTGF----AVNRMFF---PYTQAAFLLVERG--TDLYL 356 (561)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~-d~~G~----i~nrl~~---~~~~ea~~l~~~G--~~~~~ 356 (561)
|++| .+++..+.+.+++..+... ..+++ +..|- |-|-+=. .++.|+..+...+ ++.++
T Consensus 141 ----iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4455 5889999999998876421 22344 45564 3455544 3468998888765 49999
Q ss_pred HHHHHHh
Q 008576 357 IDRAITK 363 (561)
Q Consensus 357 ID~a~~~ 363 (561)
|-.++..
T Consensus 215 i~~vF~~ 221 (473)
T COG0362 215 IAEVFEE 221 (473)
T ss_pred HHHHHHH
Confidence 9888764
No 198
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.48 E-value=4.7e-07 Score=92.86 Aligned_cols=100 Identities=16% Similarity=0.025 Sum_probs=75.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.++|..|...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999987542110 0112234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~ 275 (561)
||+|+.++|...+....+.+++.+.++++++|+..+.+.. -..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 9999999999888888887888888999998865444433 345555553
No 199
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.48 E-value=8.2e-07 Score=79.56 Aligned_cols=100 Identities=27% Similarity=0.359 Sum_probs=66.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 224 (561)
+||+|||+ |..|..+|..|...+. +++++|++++.++.-...+.... ...+ ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~---~~~~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHAS---APLP----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHH---HGST----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhh---hhcc----------ccccccccccccc
Confidence 59999999 9999999999999875 79999999886654332221111 0000 0111223667899
Q ss_pred CCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeec
Q 008576 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 225 ~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
++||+||.+.- .+..+.+++..++.++. ++.+++..
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivv 117 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVV 117 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEe
Confidence 99999998872 13346677777888887 45544433
No 200
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.47 E-value=7.5e-07 Score=90.91 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhh---CHHHHHHHHHHHHHHhCC-CCCc
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSL---GSKYIYSRLEEWSSLYGE-FFKP 535 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~p 535 (561)
.++.||++.++++||+.++++|++ ++++||.++..|+|+++..-|||.++|.. |++........+....++ ++.|
T Consensus 187 G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 187 GFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 479999999999999999999999 89999999999999985555999999987 999999999888888776 7889
Q ss_pred cHHHHHHHH
Q 008576 536 CAFLAERAG 544 (561)
Q Consensus 536 ~~~l~~~~~ 544 (561)
+|++.++++
T Consensus 266 ~~~~~~~~~ 274 (308)
T PRK06129 266 VPWDGELVA 274 (308)
T ss_pred chhhHHHHH
Confidence 999999887
No 201
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.47 E-value=3.9e-06 Score=82.59 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=115.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCCCCEEEEeccCChhhHHHHHHHH
Q 008576 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l 248 (561)
-++|++++|++++++...+. .| +....+. +.+.+||+||.||+ +....+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999886543211 11 1122333 34678999999998 66778888988
Q ss_pred HhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 249 ~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+.+.++.+|+|...+++++++...++...+++.++|+.|......+. +..++..+++..+.+..++..+|+...+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 877777889999999999999998886556799999998887755544 4567778889999999999999976544 33
Q ss_pred c--ccch-hhhHHH---HHHHHHH--HHHHcCCCHHHHHHHHH
Q 008576 328 C--TGFA-VNRMFF---PYTQAAF--LLVERGTDLYLIDRAIT 362 (561)
Q Consensus 328 ~--~G~i-~nrl~~---~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (561)
. ..+. ..-..- .++.+++ ..+..|+++++-.+++.
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1111 111111 2223332 23457888888777765
No 202
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=1.2e-07 Score=92.40 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=63.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|++||++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN------------------------------------M 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC------------------------------------H
Confidence 4789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~ 109 (561)
.+...+|+.++.....+++++++.|.+.|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 47778899998877777888888887765
No 203
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.45 E-value=6e-07 Score=90.02 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||+.++|+||++|||||+|||++++.+.+.+++++|+.. |
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~----------------------------------- 227 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--L----------------------------------- 227 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--c-----------------------------------
Confidence 579999999999999999999999999999999999999973 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCH-HHHHHHHHHHh
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE-TCKSLVHIFFA 127 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~-~~~~~~~aF~~ 127 (561)
.++..+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus 228 ~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 228 NGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 255566666666666788899999988887766654 44566667654
No 204
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.42 E-value=3.3e-07 Score=95.72 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=72.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|+|||++|+|++|+++||||++||++++ +.+.+++.+++..+ |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999987 67778888887731 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~ 126 (561)
.++..+|+.+... ..+.+.++..|...+..++.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2566677777654 23456778888999999999999999999994
No 205
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.40 E-value=8.2e-06 Score=77.43 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=98.5
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-ccccccccCCCCEEEEeccCC
Q 008576 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYESFKDVDMVIEAIIEN 237 (561)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~l~~aDlVieav~e~ 237 (561)
|+.+|..++.+||+|++.|.|.+-.+.. .+++....| +. .++|.++++.+.+.|.-+|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 7899999999999999999998766542 122222223 22 245667889999999988843
Q ss_pred hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH----HHhhccCccceecccccCCCCC----CCeEEEEeCCC------C
Q 008576 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------T 303 (561)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~~------t 303 (561)
. ..-.+.++|.++++.+++|+ ||.+.|+-. +...+..+.+-+|...+.|+.. ..-.-++.+.. .
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 2 34467788999999999886 455554433 3334444545566666665432 11112333332 3
Q ss_pred cHHHHHHHHHHHHhcCCceEEEc
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+++.+++...+++..||.++++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 67899999999999999999875
No 206
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.37 E-value=7.7e-07 Score=90.65 Aligned_cols=97 Identities=24% Similarity=0.303 Sum_probs=66.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..| ++|+++|++++.++.....+.+... ..+. ...+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~---~~~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA---FLPS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhh---ccCC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 5899999999886654333222110 0000 00122 34567789
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCcee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+||+||.++.. +..+.+++.+++.++++ ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~v 113 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIF 113 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence 99999999843 33466777788888776 4444
No 207
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.35 E-value=5.7e-07 Score=91.40 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=40.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++|+|+||+++||||+|||++++++.+.++|++|+..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999984
No 208
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.35 E-value=1.5e-06 Score=88.31 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=66.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.||+|||+|.+|.++|..++..|. +++++|++++.++.....+.. ...... ...+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~------~~~~~~-------~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQH------GSAFLK-------NPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHH------hhccCC-------CCEEEECCCHHHhC
Confidence 499999999999999999998886 799999998765542222111 111100 12455567888999
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.- .+..+.+++.+++.+++++..
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~ 115 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI 115 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 9999999752 123356677778888865544
No 209
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.27 E-value=2.3e-06 Score=84.73 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=84.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
+...||+|||.|+||++||+.+..+ ++ +|.+|-..++.-.+ .+.+.+.+.+.++.-++-++ .++..++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3447999999999999999988765 23 68888776654443 23344555444444333222 234456777
Q ss_pred cccc-cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 218 ~~~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
++|+ +.+.+||++|.++| .+....++++|..++++++..+|.+.++.
T Consensus 96 v~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred cchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8887 56889999999999 56788999999999999998888776654
No 210
>PLN02602 lactate dehydrogenase
Probab=98.27 E-value=2.3e-06 Score=88.05 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=66.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|+++|..++..|. +++++|++++.++...-.+.... .... . ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~------~~~~------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA------AFLP------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh------hcCC------C-CEEEeCCCHHHhC
Confidence 599999999999999999998886 79999999876654322221111 0000 0 1344445788899
Q ss_pred CCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.- .+..+.+++..++.+++++..
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999852 123466677778888766554
No 211
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.25 E-value=1e-05 Score=82.31 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=74.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
+||+|||+|.||+-+|..|+++|++|+++++..+.++...+ +.|. +.... ....-.+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 48999999999999999999999999999998776664321 1111 00000 00000111 111233568
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~ 275 (561)
+|+||.|+- ..-..+.++++.+.+.++++|++.-.++.. ..++..++
T Consensus 71 ~D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 71 IHRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred cCEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 999999984 223446778899999999988777767664 44555554
No 212
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.25 E-value=3.3e-06 Score=85.97 Aligned_cols=97 Identities=28% Similarity=0.391 Sum_probs=66.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..| .+|+++|++++.++.....+.. ......+ ..+. ++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~------~~~~~~~-------~~i~-~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAH------GTPFVKP-------VRIY-AGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHc------cccccCC-------eEEe-eCCHHHhC
Confidence 38999999999999999999999 5899999998876532111111 0000000 1222 46778899
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCcee
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+||+||.+++. +..+.+++.+++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999864 3345677778888877655544
No 213
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.24 E-value=1.4e-05 Score=81.15 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=79.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++.. +.|..-...............+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999999999988875 44432 22321111000000111223334567799
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH-HHhhccCccceecc
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGA 283 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~r~ig~ 283 (561)
|+||.++- .-...++++.+.+.++++++|.+.--++...+ +.+..+...-+.|+
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~ 123 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGV 123 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEE
Confidence 99999984 34556788999999999997777666666444 55554433223344
No 214
>PRK15076 alpha-galactosidase; Provisional
Probab=98.22 E-value=2.9e-06 Score=90.05 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=53.9
Q ss_pred ceEEEEEcCccchHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
|+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...++..+... + ...++..++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 369999999999966554 333 346799999999999886555444433221 1 1135677788
Q ss_pred -ccccCCCCEEEEec
Q 008576 221 -YESFKDVDMVIEAI 234 (561)
Q Consensus 221 -~~~l~~aDlVieav 234 (561)
.+++++||+||+++
T Consensus 69 ~~eal~dADfVv~ti 83 (431)
T PRK15076 69 RREALQGADYVINAI 83 (431)
T ss_pred HHHHhCCCCEEeEee
Confidence 47799999999987
No 215
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.21 E-value=2.9e-06 Score=77.26 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|+|+|+|.||.+++..|...| ++|+++|++++..+...+.+.. .. + ... ..+. +.+
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~ 79 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELL 79 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhcc
Confidence 358999999999999999999986 7899999999877653322110 00 0 001 1222 337
Q ss_pred CCCCEEEEeccCChh-hHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc-cCccceecccc
Q 008576 225 KDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHF 285 (561)
Q Consensus 225 ~~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~ 285 (561)
.++|+||.|+|.... .....+. ...++++++++..++....+++.+.. ....+++..|+
T Consensus 80 ~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 80 AEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred ccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 899999999987653 1111111 12356778776544433323444333 22334444443
No 216
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.19 E-value=0.00046 Score=72.07 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=104.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
++|+|||.|.+|.+-|..|...|++|+ .+|.+.+.-+.+. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 699999999999999999999999998 4443333333221 2231 111222
Q ss_pred cccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC----------C
Q 008576 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (561)
Q Consensus 222 ~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~----------~ 291 (561)
+.++.||+|+..+|+. . ...+++++.+.+++++++.-+. +..+....-..+....++-+-|=.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 4589999999999976 3 7778899999999999875322 233322111111112222222222221 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCce--EE-Ec---cc-ccchhhh-HHHHHH-----HHHHHHHHcCCCHHHH
Q 008576 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKTP--IV-VG---NC-TGFAVNR-MFFPYT-----QAAFLLVERGTDLYLI 357 (561)
Q Consensus 292 ~~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~--v~-v~---d~-~G~i~nr-l~~~~~-----~ea~~l~~~G~~~~~I 357 (561)
.| ++.|-+-...+....+.+..+...+|... +. .. +. .-.+..| +++..+ ...-.|+++|++|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22 23333223445567888889999988662 22 11 11 1122222 222222 2334578889888765
Q ss_pred H
Q 008576 358 D 358 (561)
Q Consensus 358 D 358 (561)
-
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
No 217
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.19 E-value=5e-06 Score=83.25 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=62.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..|. ... ++ +.++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~-sl~Eaak 70 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVM-SVSEAVR 70 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EEC-CHHHHHh
Confidence 36899999999999999999999999999987543322211 1121 111 33 4578
Q ss_pred CCCEEEEeccCChhhHHHHH-HHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~ 259 (561)
.||+|+.++|. .+. +.++ .++.+.++++++++
T Consensus 71 ~ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 71 TAQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred cCCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence 99999999996 444 4555 57888899999775
No 218
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.19 E-value=7.7e-06 Score=84.15 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=72.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|.+||++...... . ..+ .. ..++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~-~~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AE-YRPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CE-ecCHHHHHhh
Confidence 69999999999999999999999999999997643211 0 111 01 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+-++..+.++++++++ |+|.-. -..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999888776666677778889999775 454432 335555553
No 219
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.15 E-value=3.2e-06 Score=78.56 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=83.3
Q ss_pred cccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
.+|+|.++|.||++.|||.+|+|. ++|++.++.+|+.|+.. ++
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~K------------------------------------Sp 235 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASK------------------------------------SP 235 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccC------------------------------------Cc
Confidence 579999999999999999999986 67899999999999984 33
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhccCC
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 132 (561)
.|+..+|+.+..+.+++.+++|..-+.+--..+.|+|.-..+.+-++|+++.
T Consensus 236 vaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 236 VAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred eeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 5888899999999999999999998888877788999998888888866554
No 220
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.15 E-value=3.3e-06 Score=86.12 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=65.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|..+|..++..|. +++++|++++.++.....+.+.. .... ...+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~------~~~~-------~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV------PFTS-------PTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc------cccC-------CeEEE-eCCHHHhC
Confidence 499999999999999999999987 89999999887655332222211 0000 01233 45778899
Q ss_pred CCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ 256 (561)
+||+||.+.-. |..+.+++..++.++.+...
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~ 117 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI 117 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999987621 33456677777777765433
No 221
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.14 E-value=5.1e-06 Score=84.31 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=67.0
Q ss_pred EEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
|+|||+|.+|.++|..++..| .+++++|++++.++.....+.+.... . ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~------~-------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF------L-------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc------c-------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 58999999998766543332221100 0 01134434568899999
Q ss_pred CEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 228 DlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
|+||.++.. +..+.+++..++.+++ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999999832 3346777778888888 455443
No 222
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.13 E-value=7.1e-06 Score=73.61 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=59.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-++|+|||.|..|.+.|+.|..+|++|++..+..+ ..+++. +.|. ...+-.+.++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~ 59 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVK 59 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHh
Confidence 36999999999999999999999999999998876 333322 3332 2222235688
Q ss_pred CCCEEEEeccCChhhHHHHH-HHHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~ 259 (561)
.+|+|+..+|+ +...+++ ++|.+.++++.++.
T Consensus 60 ~aDvV~~L~PD--~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 60 KADVVMLLLPD--EVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp C-SEEEE-S-H--HHHHHHHHHHHHHHS-TT-EEE
T ss_pred hCCEEEEeCCh--HHHHHHHHHHHHhhCCCCCEEE
Confidence 99999999994 4556777 78999999999775
No 223
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.12 E-value=5.5e-06 Score=83.03 Aligned_cols=97 Identities=28% Similarity=0.383 Sum_probs=64.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
+||+|||+|.+|.++|..|+..+. ++.++|++++.++.-...+.+. .- ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~------~~------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHA------AA------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhc------ch------hccCceEEecCCChhhhc
Confidence 489999999999999999987754 8999999965543311111000 00 000012233334588999
Q ss_pred CCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCc
Q 008576 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC 256 (561)
Q Consensus 226 ~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ 256 (561)
++|+||.+. | .|..+.+++.+++.+.+++..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~i 113 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAI 113 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeE
Confidence 999999987 3 245577888888888887444
No 224
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.08 E-value=7e-06 Score=84.45 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=66.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||+|.||.++|..|+ ..|.+|+.+|++...... . .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------T-------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------h-------------hccccCCHHHHHH
Confidence 58999999999999999994 458899999988643210 0 01112244 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH--HHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 274 (561)
+||+|+.++|.......-+-.++.+.++++++|+..+.+..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 999999999977665432224566778899977644434333 3454444
No 225
>PRK07574 formate dehydrogenase; Provisional
Probab=98.07 E-value=3.2e-05 Score=80.58 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=72.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..|...|.+|+.||++....+... ..+ +....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999763211100 011 1112234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
||+|+.++|.+.+...-+=++....++++++++ |++.-. -..+.+.+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999888776655567778889999775 555433 235555553
No 226
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.07 E-value=3.5e-06 Score=81.60 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=39.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|++||++++|+||+++||||+|+|++++++.+.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999984
No 227
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.07 E-value=6.4e-06 Score=83.52 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||+|||+|.+|..+|..++..|. +++++|++++.++.-...+ ......... ..-++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL------~~~~~~~~~-----~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDF------HHATALTYS-----TNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHH------HhhhccCCC-----CCEEEE-ECCHHHhCC
Confidence 79999999999999999999886 7999999987655422111 111110000 001233 457899999
Q ss_pred CCEEEEecc------C----------ChhhHHHHHHHHHhhcCCCceee
Q 008576 227 VDMVIEAII------E----------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 227 aDlVieav~------e----------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
||+||.+.- + |..+.+++..++.++.+ +++++
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i 116 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII 116 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 999999862 1 12355666667777774 44443
No 228
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.05 E-value=2.1e-05 Score=79.56 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=80.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 69999999999999999888789999999987421 010 0 001233 34689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhccC-ccceeccccc--CCC---CCCCeEEE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEI 297 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~-~~r~ig~h~~--~P~---~~~~lvei 297 (561)
||+|+.++|.+.+.+.-+-++....++++++++ |+|.-. -..+.+.+.. .....++--| .|. +..+.+.+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999888776655566777789998775 555432 3455555542 2333343333 232 23466667
Q ss_pred EeC
Q 008576 298 VRT 300 (561)
Q Consensus 298 v~~ 300 (561)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 777
No 229
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.05 E-value=3e-05 Score=74.23 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=112.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|++||+|.|..+|+..+...|. ++...-.+...... .+...| .-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence 479999999999999999999986 34444332211111 011112 1122334566
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE-EEeCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~ 302 (561)
++.+|+++.++- +.+...++.++...+..+.||+|...+.+++.+...+..+.|++..+++.|..+..... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999984 66777788877776677889999999999999999888788999999999998876666 446777
Q ss_pred CcHHHHHHHHHHHHhcCCce
Q 008576 303 TSPQVIVDLLDIGKKIKKTP 322 (561)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (561)
...+..+.+..++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 88888899999999998643
No 230
>PLN03139 formate dehydrogenase; Provisional
Probab=98.04 E-value=4.5e-05 Score=79.48 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=83.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||..+|+.+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 111 11223443 4689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhccC-ccceeccccc--CCC------CCCCe
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA------HVMPL 294 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~-~~r~ig~h~~--~P~------~~~~l 294 (561)
||+|+.++|.+.+.+.-+-+++...++++++|+ |++.-. -..+.+.+.. .-.-.++--| .|. +.++.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pN 334 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPN 334 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCC
Confidence 999999999888877666677888889999775 555433 2355555532 2222333323 232 23566
Q ss_pred EEEEeCC
Q 008576 295 LEIVRTN 301 (561)
Q Consensus 295 veiv~~~ 301 (561)
+-++|+-
T Consensus 335 vilTPHi 341 (386)
T PLN03139 335 HAMTPHI 341 (386)
T ss_pred eEEcccc
Confidence 6666654
No 231
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.98 E-value=3.3e-05 Score=78.58 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=72.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||++.+.... .. ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-----------------~~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-----------------VQ---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-----------------ce---------eecccccHHHHHhc
Confidence 69999999999999999999999999999986543110 00 00011233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|.+.+.+.-+-++....++++++++ |++- +.-..+.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHh
Confidence 999999999988877766677778889999775 5553 33345655553
No 232
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.97 E-value=4.7e-05 Score=68.97 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=71.4
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccc---cc-ccc
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVL---DY-ESF 224 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~---~~-~~l 224 (561)
|+|+|+|.||.-+|..|.+.|++|+++++.+ .++... +.|. ++... .-..+.... +. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 655422 1221 00000 000011111 11 245
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH-HHHhhccC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 276 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~ 276 (561)
..+|+||.|+. ..-..++++.+.+++.+++.|++...++... .+.+..+.
T Consensus 66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 78999999995 3344567888999999998777766667644 45555433
No 233
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.96 E-value=1.7e-05 Score=80.82 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=75.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYP--VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~--V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+||+|+|+ |..|..++..++..|+. |+++|+++ +.++.....+. +.....+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 48999998 99999999999999974 99999965 33332211111 1111111 001455566788
Q ss_pred ccCCCCEEEEecc--CC------------hhhHHHHHHHHHhhcCCCceeeecCCCCCHHH--HHhhccC-ccceecc
Q 008576 223 SFKDVDMVIEAII--EN------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (561)
Q Consensus 223 ~l~~aDlVieav~--e~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~-~~r~ig~ 283 (561)
++++||+||.++. .. ..+.+++.+.|.+.++ +.+++..++..++-. +...... +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999983 11 1446666677777765 555655666555332 2232222 3566665
No 234
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.96 E-value=1.4e-05 Score=76.15 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=82.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (561)
|||.|++++|+||.+-|||+++++.+.+.+.++.-+++++.. | +
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~----------------------------------p 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--S----------------------------------P 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--C----------------------------------H
Confidence 678999999999999999999999999999999999998883 2 2
Q ss_pred CcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhhc
Q 008576 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (561)
Q Consensus 81 ~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr 129 (561)
......|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 3667788898887777888999999999999999999999999998753
No 235
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.94 E-value=3.3e-05 Score=80.49 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhh--hcccC-C------------------CCCc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT--LYKTD-K------------------IEPL 59 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~--~~~~~-~------------------~~~~ 59 (561)
|+|||++|+|++|+++||||++||++++.+.+.+++ +++.. .|.... ..... . ++..
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSN-DPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-Hhhcc-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999988888887 55542 121111 00000 0 0000
Q ss_pred hhHHHHHH------------HHHHHHHh-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHhc---CHHHHHHHH
Q 008576 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (561)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~~~ 123 (561)
....+++ .++..... +.++|.+...+.+.++.+...++.+.|..|.+.-..++. ++|+.|||+
T Consensus 246 -~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 -TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred -CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0111111 12221222 245677888899999999988999999999999999988 699999999
Q ss_pred HHHh
Q 008576 124 IFFA 127 (561)
Q Consensus 124 aF~~ 127 (561)
|-+=
T Consensus 325 A~Li 328 (381)
T PLN02988 325 AILV 328 (381)
T ss_pred HHhc
Confidence 8765
No 236
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00017 Score=71.34 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=103.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--c
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--l 224 (561)
-.+|+|||.|.||.=+|..+.++||.|...||++- +.+.++ ...+.. +++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~--------yg~~~f---------------t~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK--------YGSAKF---------------TLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH--------hccccc---------------ccHHHHHh
Confidence 35899999999999999999999999999999872 222211 111111 11111 2
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhh-cCCCceeeecCCCCC--HHHHHhhccCccceecccccCCCC-C------CCe
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH-V------MPL 294 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~-~------~~l 294 (561)
+..|+|+.|+. ..-...+++..-.. ++.++|++..+|... .+.+..-++..-.++..|++..|. . .|+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 56899999985 33344555554444 567899998888643 445556677777899999985443 2 244
Q ss_pred EEEEe--C-CCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVR--T-NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~--~-~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
|-+-. + ....++..+.+..++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 43221 2 23458999999999999998888775
No 237
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.88 E-value=6.6e-05 Score=82.10 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=81.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+.... +... +.+ +...++++ .+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985221 1100 111 11122343 4689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhccC-ccceeccccc--CCC-----CCCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lv 295 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++.- .-..+.+.+.. .-...++--| .|+ +..+-|
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 272 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNV 272 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCe
Confidence 999999999877765544456666788998775 45432 33456555532 2223333323 232 234556
Q ss_pred EEEeCCC
Q 008576 296 EIVRTNQ 302 (561)
Q Consensus 296 eiv~~~~ 302 (561)
.++|+-.
T Consensus 273 i~TPHia 279 (525)
T TIGR01327 273 IATPHLG 279 (525)
T ss_pred EECCCcc
Confidence 6767644
No 238
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.86 E-value=1.3e-05 Score=74.89 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=68.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ . ...+++ .++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcch
Confidence 6999999999999999999999999999999987543110 111 1 122443 4688
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHh
Confidence 999999999776654444456667788998776 4543 23345655553
No 239
>PLN02928 oxidoreductase family protein
Probab=97.83 E-value=0.00011 Score=76.05 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=71.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6999999999999999999999999999999732211100 00 0000000000000012234 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-C--CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+-++....++++++|+ |++ + +.-..+.+.+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765545466777789999776 554 3 33345656554
No 240
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.83 E-value=7e-05 Score=79.07 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (561)
.-||+|||+ |.+|..+|..|+.. |+ +++++|++++.++.-.-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 359999999 99999999999988 66 799999999887653322222110 0112233
Q ss_pred -ccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 -~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.+.+++++++||+||.+.- .|..+.+++.++|.++..++++|+..+
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 2467899999999998761 134466777778888656677555433
No 241
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00012 Score=74.70 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=71.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
++|+|||+|.+|+.+|..+..-|.+|..||+ ....... .. ......++++ ++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~-------------~~-------------~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAG-------------VD-------------GVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhc-------------cc-------------cceecccHHHHHh
Confidence 6899999999999999999999999999999 3332211 00 1112234443 78
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~ 275 (561)
.||+|+..+|...+.+.-+=++....+++++++ .|++--. -..+.+.+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail-IN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAIL-INAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE-EECCCcceecHHHHHHHHH
Confidence 999999999988876554445666778899966 4776433 345555553
No 242
>PRK05442 malate dehydrogenase; Provisional
Probab=97.78 E-value=4.1e-05 Score=78.23 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=66.0
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (561)
..||+|||+ |.+|+++|..|+..|. +++++|+++. .++.-.-.+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 459999998 9999999999988764 7999999653 23221111111000 0001 2
Q ss_pred ccccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 215 i~~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+. +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 22 456789999999998762 133467777788888887777665444
No 243
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.78 E-value=4.9e-05 Score=77.58 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=66.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (561)
-||+|||+ |.+|+++|..|...|. +++++|+++ +.++.-. ++......... .. ..+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a------~Dl~~~~~~~~----~~--~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA------MELEDCAFPLL----AG--VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH------HHHhhcccccc----CC--cEEe-
Confidence 49999998 9999999999998885 799999965 2233211 11111110000 00 0122
Q ss_pred cccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 218 VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.+++++++||+||.+.- .+..+.+++..++.++++++++++..|
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 456789999999998761 134467788888999887677665444
No 244
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.75 E-value=4.2e-05 Score=77.66 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=62.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cc--c
Q 008576 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (561)
||+|||+ |.+|+++|..|+..++ ++.++|+++ ....+ ++. .... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a-------~DL--~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA-------ADL--SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE-------chh--hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998876 899999987 21111 110 1110 0113432 2 23 7
Q ss_pred cccCCCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCceee
Q 008576 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 ~~l~~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++++||+||.+. ..+..+.+++.+++.++. ++++++
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 8899999999886 234557777788888885 455443
No 245
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.75 E-value=0.00012 Score=80.01 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=81.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.||..+|..+...|++|+.||+.... +... ..+ +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985421 1100 111 1111 33 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhccC-ccceeccccc--CCC-----CCCCeE
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lv 295 (561)
||+|+.++|-+.+.+.-+-++..+.++++++++ |+|. +.-..+.+.+.. .-.-.++--| .|+ +..+-|
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 273 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNV 273 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCe
Confidence 999999999877765555466777889999775 4443 233456555532 2222333333 232 234556
Q ss_pred EEEeCCC
Q 008576 296 EIVRTNQ 302 (561)
Q Consensus 296 eiv~~~~ 302 (561)
.++|+-.
T Consensus 274 ilTPHia 280 (526)
T PRK13581 274 VVTPHLG 280 (526)
T ss_pred eEcCccc
Confidence 6777644
No 246
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.74 E-value=7.1e-05 Score=75.86 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=61.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-c--
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (561)
+||+|||+ |.+|+++|..++..|. +++++|++ .++. . .++- .... ....+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g-~-----alDL--~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPG-V-----AADL--SHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccce-e-----ehHh--HhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2211 1 1110 1110 00134432 2 2
Q ss_pred ccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+.- .|..+.+++..++.++.+ +++++
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 689999999998861 244467777788888854 66554
No 247
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=0.00013 Score=70.02 Aligned_cols=100 Identities=25% Similarity=0.417 Sum_probs=69.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
+..||.|||+|..|.++|..++.+|. ++.++|.+++.++.. .+|..+....+ ...++....|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE------~MDLqH~s~f~-------~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGE------MMDLQHGSAFL-------STPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhh------hhhhccccccc-------cCCceEecCcccc
Confidence 36799999999999999999999986 899999999987652 22222221111 1246667778988
Q ss_pred cCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 224 l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.+++++||..+-. +.++.+.++.++-++ +|++++.
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~ll 134 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILL 134 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEE
Confidence 9999999987621 233444455555554 5677554
No 248
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.73 E-value=8e-05 Score=74.91 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=61.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||+|.||.++|..|...|.+|++++++++..+.+. +.+. . .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654321 1121 0 000 1122 34689
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+|+||+++|...- . ++..+.++++++|+...|.
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCcC
Confidence 9999999985421 1 2344456778877654443
No 249
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.73 E-value=5.1e-05 Score=77.51 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=65.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (561)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++.-. ++...... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a------~Dl~~~~~--------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA------MELEDCAF--------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee------hhhhhccc--------cccCceEE
Confidence 49999999 9999999999998886 79999996432 22211 11110000 0001 23
Q ss_pred cccccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 216 ~~~~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
. +.+++++++||+||.+.- .|..+.+++..+|.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3 456789999999998861 134467777888888886566554443
No 250
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.72 E-value=0.00014 Score=65.86 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=60.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+++.|+|-|..|.++|+.|...|..|+++|+||-.+-++. -.| ....+-.+.+..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5899999999999999999999999999999996644322 122 1112112457899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
|++|-++-...-+..+-|+ .+++++|+++.++. +.+..+.+
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeeccccc
Confidence 9999888654334444444 46889999765553 34555544
No 251
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.69 E-value=0.00011 Score=76.27 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=67.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-c----EE--EE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY-P----VI--LK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~-~----V~--l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (561)
-||+|||+ |.+|.++|..++..|. . |. ++ |++++.++.-.-.+.+... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 2 44 44 8888876543222221110 0112233
Q ss_pred ccccccccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~~~~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.+.+++++++||+||.+. | .+..+.+++...|.++.+++++++..+
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 245778999999999875 1 134467777788888887788665443
No 252
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.66 E-value=4.9e-05 Score=74.51 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-CchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~ 42 (561)
|++||++++|+||+++||||+|||+ +++++.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999884
No 253
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.63 E-value=0.00018 Score=66.79 Aligned_cols=95 Identities=26% Similarity=0.327 Sum_probs=58.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-----
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----- 219 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----- 219 (561)
||+|||+|.+|+.++..|++.|. +++++|.+. +.+.+-.- ... .-|.-..+.....+.++.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999998 599999986 33322110 000 111111111222222221111
Q ss_pred -------cc-cccCCCCEEEEeccCChhhHHHHHHHHHhh
Q 008576 220 -------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (561)
Q Consensus 220 -------~~-~~l~~aDlVieav~e~~~~k~~v~~~l~~~ 251 (561)
+. +.++++|+||+| .++.+.+..+.......
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 236889999999 56788887777776654
No 254
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=9.1e-05 Score=74.02 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=53.7
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 699999996 9999999999999999999986543211 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
||+||.|++....+...+ ++++++++..
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDv 230 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDV 230 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEe
Confidence 999999998654443332 6789988754
No 255
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.60 E-value=0.00023 Score=74.59 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=81.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCchhhhc---cc------------------CC-CCC
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY---KT------------------DK-IEP 58 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~---~~------------------~~-~~~ 58 (561)
|+|||++|+|++|+++||+|++||.+++ +.+.+.+.++... +...-.. .. .. ++.
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTD--DPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccC--CHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 5789999999999999999999999887 5566665554332 1000000 00 00 110
Q ss_pred chhHHHHHH------------HHHHHHHh-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHhHHh---cCHHHHHHH
Q 008576 59 LGEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLV 122 (561)
Q Consensus 59 ~~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~v~~~~~~~~~~~l~~E~~~~~~l~---~s~~~~~~~ 122 (561)
. ....+++ .++..++. ..++|.+...+.+.++.+...++++.|..|.+.-..++ .++|+.|||
T Consensus 278 ~-sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGV 356 (407)
T PLN02851 278 D-TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGV 356 (407)
T ss_pred C-CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 0 0111111 12222222 24567788889999999998999999999999988887 489999999
Q ss_pred HHHHh
Q 008576 123 HIFFA 127 (561)
Q Consensus 123 ~aF~~ 127 (561)
+|-+=
T Consensus 357 RA~LI 361 (407)
T PLN02851 357 RARLV 361 (407)
T ss_pred HHHhc
Confidence 98765
No 256
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.60 E-value=0.00017 Score=78.43 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHhhCH-HHHHHHHHHHHH
Q 008576 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGS-KYIYSRLEEWSS 527 (561)
Q Consensus 458 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~~G~-~~~~~~~~~~~~ 527 (561)
.+.++.||++.++++||+.++++|++ ++++||.++..|+|+++..-|||+.+|..|. +.+.+.++++..
T Consensus 183 ~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 183 IDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 34689999999999999999999999 8999999999999988666799999999984 455665555543
No 257
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.58 E-value=0.00038 Score=69.50 Aligned_cols=71 Identities=24% Similarity=0.185 Sum_probs=49.3
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 145 RRVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+...||+|||+|.||..++..+... +++|. ++|+++++.+...+ +.+ .....+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g------------~~~~~~~~ 61 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLR------------RPPPVVPL 61 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcC------------CCcccCCH
Confidence 3457999999999999999999863 77775 88999887654221 111 01112334
Q ss_pred cc-cCCCCEEEEeccCC
Q 008576 222 ES-FKDVDMVIEAIIEN 237 (561)
Q Consensus 222 ~~-l~~aDlVieav~e~ 237 (561)
++ +.++|+|++|+|.+
T Consensus 62 eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 62 DQLATHADIVVEAAPAS 78 (271)
T ss_pred HHHhcCCCEEEECCCcH
Confidence 33 56799999999964
No 258
>PLN00106 malate dehydrogenase
Probab=97.57 E-value=0.00013 Score=74.35 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=60.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccc---
Q 008576 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (561)
.||+|||+ |.+|+.+|..|+..+. ++.++|+++ ....+. +.. ... . ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-------Dl~--~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-------DVS--HIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-------hhh--hCC-------c-CceEEEEeCCCCH
Confidence 59999999 9999999999997775 899999987 111011 000 000 0 012221 223
Q ss_pred ccccCCCCEEEEec--------------cCChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav--------------~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+. +.|..+.+++++.+.++.+ +.+++
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivi 132 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVN 132 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 57899999999875 2345577778888888874 44443
No 259
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.55 E-value=0.00043 Score=68.98 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=55.2
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999999876 455 5689999887654321 001 112334443
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCcee
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii 258 (561)
+.++|+|++|++. ..-.++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~~--~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECASV--NAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCCh--HHHHHHHHHHHHc-CCCEEE
Confidence 4789999999974 3334555544432 334444
No 260
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.54 E-value=0.00018 Score=73.36 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=58.6
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc-
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (561)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++. ++. . .++... . .. .-.+...++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g-~-----a~Dl~~--~-------~~-~~~v~~~td~ 67 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APG-V-----AADLSH--I-------DT-PAKVTGYADG 67 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--Ccc-c-----ccchhh--c-------Cc-CceEEEecCC
Confidence 46789999999 999999999999665 5899999932 111 0 000000 0 00 012322222
Q ss_pred ---ccccCCCCEEEEecc--C------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 ---YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ---~~~l~~aDlVieav~--e------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.+.- . |..+.+.+++.+.++.. +.+|+
T Consensus 68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~ivi 122 (321)
T PTZ00325 68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVG 122 (321)
T ss_pred CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 678999999998762 1 22245566666766644 45443
No 261
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.54 E-value=9.4e-05 Score=74.89 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=61.7
Q ss_pred EEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCCCE
Q 008576 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 229 (561)
|||+|.+|+.+|..++..+. ++.++|++++.++.....+.... .... ....+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~------~~~~------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAA------SFLP------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhh------cccC------CCeEEe-cCCHHHHCCCCE
Confidence 68999999999999998886 79999998876554222221111 0000 001233 456889999999
Q ss_pred EEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 230 Vieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
||.+.-. +..+.+++..++.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9997621 3346677777888875 455443
No 262
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.54 E-value=9.5e-05 Score=75.61 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=63.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ccc
Q 008576 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LLT 216 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i~ 216 (561)
||+|+|+ |.+|..+|..|+..|. +++++|+++ +.++.-...+.+ ... .... .+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d------~~~--------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQD------CAF--------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhh------hcc--------cccCCcEEe
Confidence 8999999 9999999999998764 499999987 433221100000 000 0001 122
Q ss_pred ccccccccCCCCEEEEec--c------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~~~~l~~aDlVieav--~------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
..+++++++||+||.+. | .+..+.+++..++.++++++.+++..|
T Consensus 68 -~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 -TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34668899999999875 1 144467778888888875666554443
No 263
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.52 E-value=0.00014 Score=64.71 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|.|||+|.||.+++..|+..|.+ |++++|+.++++...+.+ ....+ .+...+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 46999999999999999999999986 999999998877643221 00000 01112222 246
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999997553
No 264
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.52 E-value=0.00036 Score=70.64 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
+||+|||.|.+|..++..|...|.+|+++|++++..+.+. ..|.. . +. ..++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~-~---------~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS-P---------FH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe-e---------ec-HHHHHHHhCC
Confidence 5999999999999999999999999999999987654422 11210 0 00 0122 34678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+|+||+++|... +-++..+.++++++|+...+
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 999999998421 22334455677887765444
No 265
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.47 E-value=0.00016 Score=74.06 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 008576 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (561)
||+|||+ |.+|+.+|..|+..|. +++++|+++.. ++. . .++-.+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g-~--------------~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG-V--------------VMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce-e--------------EeehhcccchhcCceec
Confidence 6999999 9999999999998654 59999996542 211 1 00000000 01122333
Q ss_pred c-ccccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 218 V-LDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 218 ~-~~~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+ .+++++++||+||.+.- .|..+.+++..+|.++++++++++..|
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3 34788999999998761 123356777778888876667665444
No 266
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.45 E-value=0.00014 Score=75.82 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=65.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
++|+|||.|.||..+|..+...|++|++||+.....+ +. .. ..++++ +++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999997543210 00 00 123433 688
Q ss_pred CCEEEEeccCChh---hHHHHH-HHHHhhcCCCceeeecCCCCC---HHHHHhhc
Q 008576 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTSTID---LNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~ 274 (561)
||+|+.++|-..+ -.+.++ ++....++++++++ |+|.-. -..+.+.+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHH
Confidence 9999999996553 122333 44566688899775 555432 33555554
No 267
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.45 E-value=0.00064 Score=69.29 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=74.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|..||+.....+ .+ .. ..+++ .++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 00 12343 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhccC-ccceeccccc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~r~ig~h~~ 286 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++. +.-..+.+.+.. .-. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999887765555566777789999875 5553 233456666543 333 455444
No 268
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.44 E-value=0.0014 Score=62.35 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998776653
No 269
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.40 E-value=0.00052 Score=70.14 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.||..++..+.. ...+|++|+|++++.++..+.+.+ .+. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4689999999999999985554 347899999999987765433211 110 12223344 35
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+.+||+||.|++... .++. .+.++++++|...+
T Consensus 187 v~~aDIVi~aT~s~~----pvl~--~~~l~~g~~i~~ig 219 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVR--GEWLKPGTHLDLVG 219 (314)
T ss_pred HhcCCEEEEeeCCCC----CEec--HHHcCCCCEEEeeC
Confidence 789999998887542 2221 13456777554433
No 270
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.38 E-value=0.0015 Score=66.97 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=69.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccC
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~ 225 (561)
++|+|||.|.+|..+|+.+. .-|.+|..+|+....-.. . ..+ +.. .+++ .++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE-E-----------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH-H-----------hcC-------------cEe-cCHHHHHH
Confidence 69999999999999999987 678899999986421110 0 001 111 2343 478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
.||+|+.++|-+.+.+.-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888765555566777789999775 6653 33445666654
No 271
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.38 E-value=0.00038 Score=66.86 Aligned_cols=32 Identities=41% Similarity=0.503 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 59999998
No 272
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.38 E-value=0.00027 Score=74.77 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=70.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|..+..-|.+|+.||+.+... .+ ......+++ .++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 011122443 4789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999877765555466777789998775 5553 23345555553
No 273
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.36 E-value=0.00076 Score=68.97 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=69.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-ccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~ 226 (561)
++|+|||.|.+|..+|+.+..-|.+|+.||+..... . . . ..+++ .++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~---------~----~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P---------D----RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c---------c----ccCHHHHHHh
Confidence 699999999999999999988899999999863210 0 0 0 11233 3789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765555566777789999775 5653 23345655554
No 274
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.35 E-value=0.001 Score=70.52 Aligned_cols=99 Identities=21% Similarity=0.310 Sum_probs=64.3
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
.||+|||+|.- ...+...|+.. +-+|+++|+|+++++......+ ...+....+ -++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 48999999873 44555666543 4589999999999876332222 222221111 146667787
Q ss_pred -cccCCCCEEEEecc----------------------------------CChhhHHHHHHHHHhhcCCCceee
Q 008576 222 -ESFKDVDMVIEAII----------------------------------ENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 222 -~~l~~aDlVieav~----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
+++.+||+||.++- -+..+..++.+++.++++ +++++
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~li 140 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYL 140 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEE
Confidence 56999999998761 133467788888888874 55443
No 275
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.33 E-value=0.0027 Score=62.41 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=114.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHH---H-HHHHHHHHHcCCCCHHHHHhhh-ccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGR---V-RANLQSRVKKGKMTQEKFEKTI-SLLTGVL 219 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~---i-~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~ 219 (561)
|.||+-||+|..|++-...++.+ ..+|+++|.+..++.+-... | +-.++.- +.+.. .++-+++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldev----------v~~crgknlffst 70 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEV----------VKQCRGKNLFFST 70 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHH----------HHHhcCCceeeec
Confidence 46999999999999988877765 56899999999887542211 0 0011111 22222 3567788
Q ss_pred ccc-ccCCCCEEEEecc-------------CChhhHHHHHHHHHhhcCCCceeeecCCCCCHHH---HHhhccCccceec
Q 008576 220 DYE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVG 282 (561)
Q Consensus 220 ~~~-~l~~aDlVieav~-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig 282 (561)
|.+ .++++|+|+.+|. .|+.......+.|.+....+.|++ .-|+.|+.. +...+.+. --|
T Consensus 71 diekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n--~~~ 147 (481)
T KOG2666|consen 71 DIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHN--SKG 147 (481)
T ss_pred chHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcC--CCC
Confidence 875 5899999999883 244455666667777777777664 567777653 22333322 225
Q ss_pred cccc---CCCC----------CCCeEEEEeCCCCcH--HHHHHHHHHHHhcC-CceEEEcc-----cccchhhhHHHH--
Q 008576 283 AHFF---SPAH----------VMPLLEIVRTNQTSP--QVIVDLLDIGKKIK-KTPIVVGN-----CTGFAVNRMFFP-- 339 (561)
Q Consensus 283 ~h~~---~P~~----------~~~lveiv~~~~t~~--e~~~~~~~l~~~lG-k~~v~v~d-----~~G~i~nrl~~~-- 339 (561)
+||- ||-. ..|--.++.|..|.+ ..++.+..++..+= +..+.... -.-..+|..+..
T Consensus 148 i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqri 227 (481)
T KOG2666|consen 148 IKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRI 227 (481)
T ss_pred ceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHH
Confidence 5551 3321 123344777766543 34555555566542 22233221 111223333321
Q ss_pred -HHHHHHHHHH-cCCCHHHHHHHH
Q 008576 340 -YTQAAFLLVE-RGTDLYLIDRAI 361 (561)
Q Consensus 340 -~~~ea~~l~~-~G~~~~~ID~a~ 361 (561)
.+|....+.+ -|.++.++-.++
T Consensus 228 ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 228 SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 1333344444 477888887775
No 276
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0062 Score=60.95 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=118.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc---
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (561)
...|++||+++||..++..++.+|+.|.+|+|+..+.+..+.+-. +| ..|....++++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 468999999999999999999999999999999999887553211 11 01222333332
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-CCCH--HHHHhhccCccceecccccC---CCCCCCeEE
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDL--NLIGERTYSKDRIVGAHFFS---PAHVMPLLE 296 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~--~~l~~~~~~~~r~ig~h~~~---P~~~~~lve 296 (561)
++.--.||.-|-.. .....++++|.+++.++-||+.... ..+- ....+.....--|+|..--- .+.++| .
T Consensus 67 klk~PR~iillvkAG-~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAG-APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCC-CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 45566667666322 2345678899999998887776433 3332 22333333444566654421 111221 2
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCC-----c--eEEEcc-cccch----hhhHHH---HHHHHHHHHHHc--CCCHHHHHH
Q 008576 297 IVRTNQTSPQVIVDLLDIGKKIKK-----T--PIVVGN-CTGFA----VNRMFF---PYTQAAFLLVER--GTDLYLIDR 359 (561)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk-----~--~v~v~d-~~G~i----~nrl~~---~~~~ea~~l~~~--G~~~~~ID~ 359 (561)
++|| .+++....++.++..+.. . -..+++ ..|-+ -|-|-. .++.|+..+... |++-++|-.
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3444 578888888888765421 1 234554 34543 344432 456788888765 468888888
Q ss_pred HHHh
Q 008576 360 AITK 363 (561)
Q Consensus 360 a~~~ 363 (561)
++..
T Consensus 222 vF~~ 225 (487)
T KOG2653|consen 222 VFDD 225 (487)
T ss_pred HHHh
Confidence 7754
No 277
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.31 E-value=0.0018 Score=66.04 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=69.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|..+|+.+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 69999999999999999998889999999975321 0 0000 1233 34789
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
||+|+.++|-+.+...-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999877765555466777789999775 5553 33446666654
No 278
>PRK04148 hypothetical protein; Provisional
Probab=97.31 E-value=0.0011 Score=58.10 Aligned_cols=95 Identities=24% Similarity=0.262 Sum_probs=65.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
+||.+||+| -|..+|..|++.|++|+.+|+++++++.+.+. + .. ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 589999999 89999999999999999999999987765421 1 00 000111 12334556899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
|+|...-|. +++ +.-+-++.+.+..+.+|..-++
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCC
Confidence 999988773 343 4445567777777777754443
No 279
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00052 Score=68.80 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=52.9
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|+||| .|.||.+||..|.++|++|++|+ ++++ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6999999 89999999999999999999995 5542 11 1246
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
.||+||.|++....+... +++++++++...
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcC
Confidence 799999999864433222 277899887543
No 280
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.27 E-value=0.0017 Score=68.95 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=49.3
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc
Q 008576 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (561)
+||+|||+|.. +..+...|+.. +-+|+++|+|+++++..... ..+..+....+ -++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l----~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA----VKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEECCH
Confidence 59999999875 33455555543 35899999999998763322 22222221111 246677887
Q ss_pred -cccCCCCEEEEec
Q 008576 222 -ESFKDVDMVIEAI 234 (561)
Q Consensus 222 -~~l~~aDlVieav 234 (561)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999886
No 281
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.26 E-value=0.002 Score=59.81 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=45.7
Q ss_pred EEEEEcCccchHHHH--HHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-
Q 008576 149 KVAILGGGLMGSGIA--TALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (561)
Q Consensus 149 kV~VIG~G~mG~~iA--~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (561)
||+|||+|..-.+.- ..+... +.+|+++|+|+++++....-.+.. .+.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 799999998755532 233332 348999999999988654332222 2221111 245667887
Q ss_pred cccCCCCEEEEec
Q 008576 222 ESFKDVDMVIEAI 234 (561)
Q Consensus 222 ~~l~~aDlVieav 234 (561)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999886
No 282
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0016 Score=63.15 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=60.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccc---cc-
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YE- 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~- 222 (561)
++|+|||+|.+|.++|..|.+.||+|+++|.+++.+++..+. .++.. -+.. .++ +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence 589999999999999999999999999999999987763310 00000 0000 111 11
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHh-hcCCCceeeec
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASN 261 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~-~~~~~~ii~s~ 261 (561)
.+.++|.+|-++.+|. ...++..+.. ......+++-.
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEe
Confidence 2689999999987653 3344444442 24445556543
No 283
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.24 E-value=0.0016 Score=68.48 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=59.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. ..|... ....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~~~-------------~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGYEV-------------MTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCCEE-------------ccHHHHHcCC
Confidence 5899999999999999999999999999999998876543 223200 0001345689
Q ss_pred CEEEEeccCChhhHHHHHH-HHHhhcCCCceeee
Q 008576 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILAS 260 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s 260 (561)
|+||+|+... .++. .....++++.+++.
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEE
Confidence 9999998532 2333 33556788887754
No 284
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.22 E-value=0.00065 Score=67.93 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=36.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|+|+|.+|.+++..|+..|++|+++++++++++...
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la 157 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA 157 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35899999999999999999999999999999988776543
No 285
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.21 E-value=0.00038 Score=72.37 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=64.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~~ 226 (561)
++|+|||.|.||+.+|..+..-|.+|.+||+.... . +. ... ..++++ ++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------ccc-cCCHHHHHhh
Confidence 69999999999999999999999999999964321 0 00 000 123433 688
Q ss_pred CCEEEEeccCChh----hHHHHHHHHHhhcCCCceeeecCCCC---CHHHHHhhc
Q 008576 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERT 274 (561)
Q Consensus 227 aDlVieav~e~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~ 274 (561)
||+|+.++|-..+ ...-+=++....++++++++ |+|-- .-..+.+.+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHH
Confidence 9999999985543 22222245556678999875 56542 233555554
No 286
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.19 E-value=0.0015 Score=69.16 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=47.9
Q ss_pred eEEEEEcCccchH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 148 ~kV~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
+||+|||+|..-+ .+...|+.. +-+|+++|+| +++++.....+++ ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999987633 455555552 3589999999 7887653322222 22221110 14566777
Q ss_pred c-cccCCCCEEEEec
Q 008576 221 Y-ESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~-~~l~~aDlVieav 234 (561)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 7 5689999999886
No 287
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.18 E-value=0.00095 Score=67.14 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=51.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|.|||+|.+|.+++..|+..|. +|+++||+.++++...+.+.... .. ..+....++ +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988766443321110 00 011111222 3467
Q ss_pred CCCEEEEeccC
Q 008576 226 DVDMVIEAIIE 236 (561)
Q Consensus 226 ~aDlVieav~e 236 (561)
++|+||.|+|-
T Consensus 192 ~aDiVInaTp~ 202 (284)
T PRK12549 192 AADGLVHATPT 202 (284)
T ss_pred CCCEEEECCcC
Confidence 89999999874
No 288
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.17 E-value=0.0032 Score=60.50 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=51.6
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 149 kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
||++| |+ ..+|.++|+.|+..|++|++..|..+++++....+.+.-...+..+..+.++.+.....+ .+.+..
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~-----~~~~g~ 81 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEAL-----PEEFGR 81 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHH-----HHhhCc
Confidence 56666 77 678999999999999999999999999988665543200001111223333322222111 145678
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|++|+..
T Consensus 82 iDiLvNNA 89 (246)
T COG4221 82 IDILVNNA 89 (246)
T ss_pred ccEEEecC
Confidence 89999765
No 289
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.14 E-value=0.0034 Score=63.36 Aligned_cols=104 Identities=16% Similarity=0.025 Sum_probs=65.9
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhccccccccccccCCCCEEEEeccC
Q 008576 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (561)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~aDlVieav~e 236 (561)
||+.+|..|+++|++|++++|+ +.++... +.|.. ....-......+..+++.+.+..+|+||.|+..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4443321 12210 000000000022334455557789999999974
Q ss_pred ChhhHHHHHHHHHhhcCCCceeeecCCCCCH-HHHHhhcc
Q 008576 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (561)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~ 275 (561)
. ...++++.+.+++.++++|++...++.. ..+...++
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~ 107 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP 107 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC
Confidence 3 3467788899999888888776666654 34554443
No 290
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00083 Score=69.57 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=38.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (561)
|+||.|||+|.+|+.+|..|+++| .+|++.||+.++++++.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 579999999999999999999999 89999999999988765
No 291
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.12 E-value=0.00085 Score=68.54 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=35.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCch------------HHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~la~~ 42 (561)
|++||++++|++|+++||||+|||+.++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 5789999999999999999999998887 66666777666653
No 292
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.10 E-value=0.00031 Score=76.46 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++|+|+||++|||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999999985
No 293
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.10 E-value=0.0029 Score=64.57 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=49.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
-++|+|||+|.||..++..+...| .+|+++|+++++.+...+. .|. . .+. .+++ +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-~---------~~~-~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-N---------AVP-LDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-e---------EEe-HHHHHHHH
Confidence 468999999999999999998866 6899999999876543221 111 0 000 0112 346
Q ss_pred CCCCEEEEeccCCh
Q 008576 225 KDVDMVIEAIIENV 238 (561)
Q Consensus 225 ~~aDlVieav~e~~ 238 (561)
.++|+||.|++...
T Consensus 237 ~~aDvVi~at~~~~ 250 (311)
T cd05213 237 NEADVVISATGAPH 250 (311)
T ss_pred hcCCEEEECCCCCc
Confidence 78999999998543
No 294
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.08 E-value=0.0019 Score=66.24 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=60.2
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++. +.+. .+...++. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 4689999999999997666544 35689999999999876543321 1110 12223444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++||+||.|+|....+ +. .+.+++++.|.+..|
T Consensus 190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA 223 (325)
T ss_pred hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 88999999999754322 21 234577776654444
No 295
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.08 E-value=0.00087 Score=68.71 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=63.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 008576 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (561)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. ++. . .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 37999999 999999999998855 489999996531 221 0 00000000 0112333
Q ss_pred cccc-ccccCCCCEEEEecc--------------CChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 217 GVLD-YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 217 ~~~~-~~~l~~aDlVieav~--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
...+ ++++++||+||.+.- .|..+.+++..++.++++++++++..+
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3445 478999999998761 123345777788888876677555444
No 296
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.07 E-value=0.0011 Score=67.55 Aligned_cols=101 Identities=21% Similarity=0.109 Sum_probs=71.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
=++++|||.|.+|..+|+.+..-|.+|..||+++.. +. . +.. .....+ + +.++
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~-~-----------~~~------------~~~y~~-l~ell~ 199 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EA-E-----------KEL------------GARYVD-LDELLA 199 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HH-H-----------hhc------------Cceecc-HHHHHH
Confidence 379999999999999999999778899999998641 11 0 000 011122 3 3478
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC---HHHHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~ 274 (561)
.||+|+..+|-..+...-+=++..+.++++.+|+ ||+--. -..+.+.+
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL 250 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDAL 250 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHH
Confidence 9999999999888876666677778889988774 776433 33455555
No 297
>PLN02306 hydroxypyruvate reductase
Probab=97.04 E-value=0.0016 Score=68.17 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=71.0
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
++|+|||.|.+|..+|+.+. .-|.+|..||+.... .+........ .....+... .......++++ +
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence 68999999999999999986 669999999987532 1110000000 000000000 01111235544 7
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC---CCHHHHHhhcc
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 275 (561)
+.||+|+.++|-+.+...-+=++..+.++++++++ |++. +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999877765555566777889999775 5553 23345555553
No 298
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.02 E-value=0.0025 Score=66.78 Aligned_cols=97 Identities=24% Similarity=0.162 Sum_probs=63.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
-++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..|. ...+..+.+++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~ 250 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKI 250 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhc
Confidence 36899999999999999999999999999999987644322 1221 00011134678
Q ss_pred CCEEEEeccCChhhHHHHHH-HHHhhcCCCceeeecCCC---CCHHHHHh
Q 008576 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGE 272 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s~tS~---~~~~~l~~ 272 (561)
+|+||.++... .++. +....++++++++..... +....+.+
T Consensus 251 aDVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 251 GDIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 99999987532 2332 355667888877643331 34445544
No 299
>PRK05086 malate dehydrogenase; Provisional
Probab=97.02 E-value=0.0012 Score=67.41 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=57.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccc-
Q 008576 148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (561)
+||+|||+ |.+|.+++..+.. .+++++++|+++.. .+. .++. ... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~-----alDl--~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGV-----AVDL--SHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cce-----ehhh--hcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999988855 25689999998542 110 0110 000 00012222 334
Q ss_pred ccccCCCCEEEEeccC--------------ChhhHHHHHHHHHhhcCCCceee
Q 008576 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 221 ~~~l~~aDlVieav~e--------------~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
++++++||+||.|.-. |..+.+++.+.+.++. ++++++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 4778999999998721 2235666777777774 455443
No 300
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.01 E-value=0.0024 Score=67.35 Aligned_cols=85 Identities=22% Similarity=0.171 Sum_probs=59.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5899999999999999999999999999999987654322 1121 00 111 33568
Q ss_pred CCEEEEeccCChhhHHHHHH-HHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~s~t 262 (561)
+|+||.|+.. . .++. +....++++++++...
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcC
Confidence 9999998742 1 2343 4556678888776433
No 301
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.01 E-value=0.0058 Score=58.21 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=74.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|.+|...+..|...|++|++++++.. .+.. ....+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6999999999999999999999999999986532 1111 11222111 0000111245889
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCCc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t~ 304 (561)
+|+||-|+. +.++-..+.+ .+..+. ++.+.. .|+. ..|..|.. ..++..-+.+...+
T Consensus 71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVIT------------DAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999988765 4455444433 333343 332221 1221 24555543 35566666666678
Q ss_pred HHHHHHHHHHHHh
Q 008576 305 PQVIVDLLDIGKK 317 (561)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (561)
|.....++.-+..
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8776666665554
No 302
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.00 E-value=0.00041 Score=75.69 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=39.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 008576 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (561)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (561)
|+|||++++|+||+++||||+|||++++++.+.++|++|+..
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999985
No 303
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.97 E-value=0.0038 Score=58.84 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=59.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+. .+ ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHH
Confidence 3799999999999999876644 24 488999999987653321 00 111245544
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 266 (561)
+.+.|+|+||.. .+..++...++.+. .-++||.| ++.+.
T Consensus 58 ~~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 58 IAEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hhccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 489999999986 44444544444332 33566654 44455
No 304
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.0015 Score=65.52 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=51.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6899999999887654432210 00 01111111 4467
Q ss_pred CCCEEEEeccCC
Q 008576 226 DVDMVIEAIIEN 237 (561)
Q Consensus 226 ~aDlVieav~e~ 237 (561)
++|+||.|+|..
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999854
No 305
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.95 E-value=0.0048 Score=58.88 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=75.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.+.+. .+...-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 59999999999999999999999999999876531 1 11112222211 11111112457899
Q ss_pred CEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCC--CCCCeEEEEeCCCCcH
Q 008576 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (561)
Q Consensus 228 DlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t~~ 305 (561)
|+||.|+. +.++-..++... ....+++.+.+. |+ -..|+.|. ...+++.-+.+...+|
T Consensus 71 ~lVi~at~-d~~ln~~i~~~a----~~~~ilvn~~d~------------~e---~~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAATD-DEELNRRVAHAA----RARGVPVNVVDD------------PE---LCSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECCC-CHHHHHHHHHHH----HHcCCEEEECCC------------cc---cCeEEEeeEEEcCCEEEEEECCCCCc
Confidence 99998754 455555554433 333333322221 11 12344553 3455555566667788
Q ss_pred HHHHHHHHHHHh
Q 008576 306 QVIVDLLDIGKK 317 (561)
Q Consensus 306 e~~~~~~~l~~~ 317 (561)
.....++.-++.
T Consensus 131 ~la~~lr~~ie~ 142 (205)
T TIGR01470 131 VLARLLRERIET 142 (205)
T ss_pred HHHHHHHHHHHH
Confidence 776666655544
No 306
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.012 Score=59.07 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=85.7
Q ss_pred eEEEEEcCccchHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--
Q 008576 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (561)
-||++||+|.||+.|+...++ .|++|. +-|++.+...++.++.-..-...++....+.-...-..+.+..++|.+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 499999999999999977765 598865 5588887777665432100001111111111111111234555666554
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC-----CCCHHHHHhhccCccceecccccCCCCCCCeEEE
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-----TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS-----~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lvei 297 (561)
....|+||+++--...--+-.+..| ....-+|..|.- +..+.+.+... | |.+
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------G------------viy 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQADAA-------G------------VIY 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHHhhc-------C------------eEE
Confidence 3567899998732222222222333 333344544432 22233333222 2 223
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
..+..-.|...-.+.+|.+++|..++..+
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 33444567777788899999999999876
No 307
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0014 Score=65.11 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=52.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||. |.||.++|..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 69999999 99999999999999999999942111 11 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+||+||.|++....+..+ .++++++++..+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999855444332 378899887543
No 308
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0033 Score=63.97 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=60.4
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..+.. .+. +|.+|++++++.++..+++.+ .+ + .+. ..+. +.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHH
Confidence 3589999999999999999875 464 799999999987765433211 11 0 011 2333 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+.++|+||.|+|.... ++.. .+++++.|....|
T Consensus 186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs 218 (304)
T PRK07340 186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGA 218 (304)
T ss_pred hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCC
Confidence 7899999999985432 2322 2467776654444
No 309
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.89 E-value=0.0022 Score=60.73 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+ |.+|..++..|+..|++|++++|+.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776544
No 310
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.88 E-value=0.0034 Score=64.56 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=61.3
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+ + + .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 4589999999999998877753 454 79999999998776554332110 1 0 11223344 34
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.++|+||.|+|... .++. ..+++++.|.+..|.
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 789999999998542 2332 345778876555443
No 311
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.84 E-value=0.0061 Score=68.95 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=76.9
Q ss_pred EEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCC--HHHHHhhccC-ccceecccccCCCC------------CCCe
Q 008576 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (561)
Q Consensus 230 Vieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~P~~------------~~~l 294 (561)
||.|+| +....++++++.++++++++|+..+|+.. +..+.+.+.. +.+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688998 77888999999999999999998888753 3555555543 35799999986553 2456
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
+.+++.+.++++.++.+.+++..+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 77889889999999999999999999988886
No 312
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.81 E-value=0.004 Score=54.38 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=58.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.||+|+|+ |.||..|+..+.. .|++ |..+|++++.... . .+ ... .+.- ...+..++++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g-~-d~----g~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG-K-DV----GEL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT-S-BC----HHH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc-c-hh----hhh--hCcC--------CcccccchhHHHh
Confidence 48999999 9999999999998 6888 4577877622110 0 00 000 0000 012333455544
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 271 (561)
+..+|+||+.. .++...+.++... ..+.-+++.|+++.-.++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYAL---KHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHH---hCCCCEEEECCCCCHHHHH
Confidence 66799999987 3444444444433 3466677778888755443
No 313
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.80 E-value=0.0036 Score=63.41 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=70.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
.-++|+|+|+|.+|..+|+.|..-|..+.-+.|++..-+...+ .+ . ...+..+-+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~-----------~--~~~d~~~~~~ 216 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YY-----------A--EFVDIEELLA 216 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hc-----------c--cccCHHHHHh
Confidence 4479999999999999999999989444444555443332111 00 0 0112224578
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH--HHHhhc
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT 274 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~ 274 (561)
++|+||.|.|-+.+...-+=+++...++++.+|+...-+-.+. ++.+.+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 9999999999988877777778888999999886444343333 444444
No 314
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.79 E-value=0.0058 Score=59.85 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=48.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
.||+|||.|.||..++..+...+ ++ +.++++++++.+... +.....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence 59999999999999999987643 44 456788775544321 01223445555
Q ss_pred --cCCCCEEEEeccCChhhHHHHHHHH
Q 008576 224 --FKDVDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 224 --l~~aDlVieav~e~~~~k~~v~~~l 248 (561)
....|+||||.. .+..++....+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~i 82 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGC 82 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHH
Confidence 367999999996 44444444443
No 315
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.78 E-value=0.0052 Score=53.43 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=58.1
Q ss_pred EEEEEcC-ccchHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc--
Q 008576 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (561)
||+|+|+ |.+|..++..+... +++|..+ +++.+..+... . ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 6899995 99999999999885 8887766 65432211111 0 0111100 0000111122
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
..++|+||.|+|.+... +++..+...+.++++++..+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999966433 3333444556789999888877653
No 316
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.76 E-value=0.0041 Score=65.05 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3679999999999999999999999999999999876553
No 317
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.76 E-value=0.015 Score=57.32 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=63.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
-++|+|||.|.-|.+-|..|..+|.+|++--+.... .++ ..+.|. ...+--++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhh
Confidence 469999999999999999999999998876654433 222 223332 1122225689
Q ss_pred CCCEEEEeccCChhhHHHHHH-HHHhhcCCCceee
Q 008576 226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~-~l~~~~~~~~ii~ 259 (561)
.+|+|+.-+|+. +..++++ +|.+.++.+..+.
T Consensus 74 ~ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 74 RADVVMILLPDE--QQKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred cCCEEEEeCchh--hHHHHHHHHhhhhhcCCceEE
Confidence 999999999953 5567777 8999999988664
No 318
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.75 E-value=0.015 Score=59.03 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=73.1
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.||+|||.|.||..++..+... +++++ ++|+++ +.+.. ..+.. .+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v~-------------~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPVY-------------AVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCcc-------------ccCCHHHh
Confidence 5999999999999999988765 78876 579985 32211 01111 11222 33
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t 303 (561)
+.++|+|+.|+|..... ..+.+.+..+.=+++.. |++. .
T Consensus 58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999865442 22222223322111110 1111 1
Q ss_pred cHHHHHHHHHHHHhcCCceEEE-cccccch-hhhHHH
Q 008576 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFA-VNRMFF 338 (561)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i-~nrl~~ 338 (561)
.++..+.+...++.-|...+.. +-.|||. +||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 3567777778888766655544 5568875 678775
No 319
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.74 E-value=0.005 Score=63.33 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=51.7
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-ccc
Q 008576 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 224 (561)
++++|||+|.+|...+..++ ..+. +|++|+|++++.++..+++.+.+ + + .+...+++ +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 58999999999999999987 4564 69999999998876554332110 1 0 12223344 347
Q ss_pred CCCCEEEEeccCC
Q 008576 225 KDVDMVIEAIIEN 237 (561)
Q Consensus 225 ~~aDlVieav~e~ 237 (561)
.+||+||.|+|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999753
No 320
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.74 E-value=0.0037 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (561)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 689999999887654
No 321
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.73 E-value=0.0039 Score=56.98 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 59999998 999999999999999999999999988754
No 322
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.72 E-value=0.0038 Score=67.53 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=50.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 227 (561)
++++|+|+|.+|.+++..|+..|++|+++|++.++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988765533211 001111 1122336789
Q ss_pred CEEEEeccCCh
Q 008576 228 DMVIEAIIENV 238 (561)
Q Consensus 228 DlVieav~e~~ 238 (561)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
No 323
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.72 E-value=0.0039 Score=66.19 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=60.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 0 1122 34678
Q ss_pred CCEEEEeccCChhhHHHHH-HHHHhhcCCCceeeecCCCCC
Q 008576 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID 266 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 266 (561)
+|+||.|+. + +.++ .+..+.++++++|+ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999864 2 2233 34555678888775 555443
No 324
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=96.71 E-value=0.0025 Score=58.66 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=33.1
Q ss_pred ceEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+.|+++| |+ -.+|.+|++.|+++|+.|.+.|++.+.+++..
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 4566666 44 46899999999999999999999988766544
No 325
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.69 E-value=0.0023 Score=58.94 Aligned_cols=72 Identities=26% Similarity=0.311 Sum_probs=51.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 69999999987 88899999999999999998753222 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||-|++..--+..+ .++++.+|+....
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~ 117 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGI 117 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccC
Confidence 99999999753223222 2345666665443
No 326
>PLN02494 adenosylhomocysteinase
Probab=96.68 E-value=0.004 Score=66.01 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=59.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|.- . .++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~~-------------v-v~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGYQ-------------V-LTLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCCe-------------e-ccHHHHHhh
Confidence 6899999999999999999999999999999987643322 12210 0 012 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+|+||++.... ..+..+..+.++++++++...
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcC
Confidence 99999876422 223355556688898886443
No 327
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.62 E-value=0.0038 Score=54.27 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=57.7
Q ss_pred EEEEEc-CccchHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-ccccc
Q 008576 149 KVAILG-GGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (561)
Q Consensus 149 kV~VIG-~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 224 (561)
||+||| .|.+|..+...|.++ .++ +.++.++.+.-.... ..... ......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS--------EVFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH--------HTTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee--------hhccc--------cccccceeEeecchhHh
Confidence 799999 799999999999985 335 455666552111100 00000 00011222222 34568
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCH
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 267 (561)
.++|+||.|+|. ....++..++ +..++.|+++++.+..
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hcCCEEEecCch--hHHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 999999999984 3444555544 4578888888887644
No 328
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.61 E-value=0.0052 Score=61.80 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
++|.|||+|.+|.+++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999997 6999999998876543
No 329
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.54 E-value=0.0039 Score=66.48 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
++|+|||+|.||..++..|...|+ +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
No 330
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.006 Score=60.86 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=37.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (561)
++|.|+|+|.++.+++..|++.|. +|++++|+.++.++..+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 689999999999999999999995 79999999999877543
No 331
>PLN00203 glutamyl-tRNA reductase
Probab=96.51 E-value=0.0037 Score=67.82 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=35.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (561)
-++|+|||+|.||..++..|...|+ +|++++++.++++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 4689999999999999999999997 699999999887653
No 332
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.46 E-value=0.012 Score=60.61 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=51.5
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+.+.+ + + .+....++ +.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence 3589999999999998888875 45 579999999998877554332110 1 0 12223444 44
Q ss_pred cCCCCEEEEeccCC
Q 008576 224 FKDVDMVIEAIIEN 237 (561)
Q Consensus 224 l~~aDlVieav~e~ 237 (561)
+.++|+||.|+|..
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 78899999998753
No 333
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.43 E-value=0.034 Score=47.85 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=46.8
Q ss_pred EEEEEcCccchHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-c
Q 008576 149 KVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l 224 (561)
||+|||+|.+|......+... +.+| .++|+++++.+...+. . .+...+|+++ +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~-------------~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y-------------GIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T-------------TSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h-------------cccchhHHHHHH
Confidence 899999999999999888877 4554 4889999887653211 1 1223444443 3
Q ss_pred --CCCCEEEEeccCCh
Q 008576 225 --KDVDMVIEAIIENV 238 (561)
Q Consensus 225 --~~aDlVieav~e~~ 238 (561)
.+.|+|+.|+|...
T Consensus 59 ~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHTTESEEEEESSGGG
T ss_pred HhhcCCEEEEecCCcc
Confidence 37899999998543
No 334
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.42 E-value=0.0052 Score=58.56 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999997 89999987
No 335
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.41 E-value=0.007 Score=59.59 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=41.8
Q ss_pred ccceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 008576 145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (561)
Q Consensus 145 ~~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (561)
+..+++.|-|+ +.+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999987766544
No 336
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.38 E-value=0.025 Score=51.51 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=29.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEV 178 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (561)
++|.|||+|.+|...+..|...|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 6899999999999999999999999999964
No 337
>PRK06046 alanine dehydrogenase; Validated
Probab=96.38 E-value=0.01 Score=60.93 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=58.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (561)
.++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+. .+ -.+...+++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHH
Confidence 46899999999999999988743 44 7899999998887755433211 01 01222344443
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+. +|+|+.|+|.... ++. .+.+++++.|.+..|
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 44 9999999985432 221 123466776654443
No 338
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.36 E-value=0.027 Score=65.65 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.3
Q ss_pred cccceEEEEEcCccchHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHH
Q 008576 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGI 187 (561)
Q Consensus 144 ~~~~~kV~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~ 187 (561)
...++||+|||+|.||..+|..|++. +++ |++.|++.+.+++..
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la 623 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV 623 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence 45578999999999999999999875 334 999999998776543
No 339
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.36 E-value=0.0098 Score=58.97 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cc---c
Q 008576 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y 221 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~ 221 (561)
+||++||.|.+-...-...... |..|..+|+++++.+.+.+-+..... .. .++++. .| .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999976654433333 45789999999998876643331111 01 122221 11 1
Q ss_pred -cccCCCCEEEEecc--CChhhHHHHHHHHHhhcCCCceeeec
Q 008576 222 -ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 222 -~~l~~aDlVieav~--e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
.++.++|+|+.|.- .+.+-|.+++..|.+.+++|++|+.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 34788999999863 34457999999999999999988754
No 340
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.33 E-value=0.0038 Score=58.15 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.8
Q ss_pred EEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 150 V~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
|.|+|+ |.+|..++..|++.|++|++.-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 789997 999999999999999999999999987653
No 341
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.32 E-value=0.017 Score=62.39 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=37.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
=.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999988755
No 342
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.32 E-value=0.0071 Score=64.02 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (561)
+||.|||+|.||..++..|+..|. ++++++|+.++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQK 220 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 589999999999999999999995 79999999887654
No 343
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.27 E-value=0.011 Score=58.72 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEE-EEeCCHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~ 183 (561)
.||+|+|+ |.||..++..+... +++|+ ++|++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 59999998 99999999988764 67755 588887653
No 344
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.23 E-value=0.02 Score=58.05 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=52.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.+|...+..++.- .+ +|.+|++++++.++..+++.+.+ + -.+...++. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 46899999999999888877753 33 79999999999887554432211 1 023333444 45
Q ss_pred cCCCCEEEEeccCC
Q 008576 224 FKDVDMVIEAIIEN 237 (561)
Q Consensus 224 l~~aDlVieav~e~ 237 (561)
+.+||+|+.|++..
T Consensus 180 v~~aDIV~taT~s~ 193 (301)
T PRK06407 180 LRDADTITSITNSD 193 (301)
T ss_pred HhcCCEEEEecCCC
Confidence 89999999988744
No 345
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.22 E-value=0.01 Score=61.15 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 346
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.034 Score=58.31 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=49.4
Q ss_pred ceEEEEEcCccchHHHHH-HHH-h----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccc
Q 008576 147 VKKVAILGGGLMGSGIAT-ALI-L----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~-~la-~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (561)
..||+|||+|..+.+.-. .+. + .+.++.++|+++++++... ...++.++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~----~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIA----ILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999987765432 222 2 2558999999999987322 2233333322111 24666777
Q ss_pred c-cccCCCCEEEEec
Q 008576 221 Y-ESFKDVDMVIEAI 234 (561)
Q Consensus 221 ~-~~l~~aDlVieav 234 (561)
. +++.+||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 7 5699999999886
No 347
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.18 E-value=0.0061 Score=60.69 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=23.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEE
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVIL 175 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l 175 (561)
|.||+|||+|.||..++..+.+. +.++..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~ 30 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDW 30 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEE
Confidence 35999999999999999998876 566543
No 348
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0065 Score=60.06 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--c--ccc-c
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--V--LDY-E 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~--~~~-~ 222 (561)
.||+|||.|..|.--|+...--|.+|++.|+|.+++...-. ... .++.. + .++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd--------~f~-------------~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD--------LFG-------------GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH--------hhC-------------ceeEEEEcCHHHHHH
Confidence 58999999999999999988889999999999988765221 110 12211 1 123 4
Q ss_pred ccCCCCEEEEecc-CChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 SFKDVDMVIEAII-ENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 ~l~~aDlVieav~-e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
.+..+|+||-+|- .....-+-+.+++.+.++++++|+.
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 5899999999871 0111122355666677888988765
No 349
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.16 E-value=0.029 Score=59.85 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=75.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc-cC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l~ 225 (561)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+... ..++. . ...+.+. ..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~-----~~~~~----~---------------~~~~~~~~~~ 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSC-----PYIHE----R---------------YLENAEEFPE 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchh-----HHHhh----h---------------hcCCcHHHhc
Confidence 4689999999999999999999999999999887643310 00000 0 0001112 36
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEEEEeCCCCcH
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t~~ 305 (561)
++|+||.+.+.+.. ...+++.. ..+..+++.+ +++-.. . .+.. .+.+ -|.|...+-
T Consensus 59 ~~dlvV~s~gi~~~--~~~l~~A~---~~g~~vv~~~------~~~~~~------~--~~~~----~~~I-~ITGT~GKT 114 (418)
T PRK00683 59 QVDLVVRSPGIKKE--HPWVQAAI---ASHIPVVTDI------QLAFQT------P--EFTR----YPSL-GITGSTGKT 114 (418)
T ss_pred CCCEEEECCCCCCC--cHHHHHHH---HCCCcEEEHH------HHHHhh------h--hcCC----CCEE-EEECCCChH
Confidence 79999988765422 33443332 2333343332 111000 0 0001 1222 344555566
Q ss_pred HHHHHHHHHHHhcCCceEEEcc
Q 008576 306 QVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.+-+.+..+++..|+.....+.
T Consensus 115 TTt~ml~~iL~~~g~~~~~~Gn 136 (418)
T PRK00683 115 TTILFLEHLLKRLGIPAFAMGN 136 (418)
T ss_pred HHHHHHHHHHHHcCCCeEEECC
Confidence 7777788888888876555543
No 350
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.14 E-value=0.035 Score=53.41 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=74.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|.|||+|.++..=+..|+..|.+|+++..+ ++- .. +.+.+.++ .+.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999999999999999999654 331 11 12223221 111011224588
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQT 303 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t 303 (561)
++++||.|+. |.++-+.+ ...+....+++.+... |+ -..|+.|+. ..+++.-+.+...
T Consensus 85 g~~LViaATd-D~~vN~~I----~~~a~~~~~lvn~vd~------------p~---~~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIATD-DEKLNNKI----RKHCDRLYKLYIDCSD------------YK---KGLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECCC-CHHHHHHH----HHHHHHcCCeEEEcCC------------cc---cCeEEeeeEEecCCEEEEEECCCc
Confidence 9999998875 55544444 4444443333333221 11 123555642 3455555666667
Q ss_pred cHHHHHHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKK 317 (561)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (561)
+|.....++.-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 77766665555443
No 351
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.13 E-value=0.23 Score=50.72 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|+|+|+|.+|..-.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5999999998887666666668999999999999987755
No 352
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.12 E-value=0.0035 Score=66.10 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEcCccchHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 008576 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (561)
|.|+|+|.+|..++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987644
No 353
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.11 E-value=0.024 Score=57.84 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=61.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 146 RVKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
....++|||+|.++......+..- + -+|.+|+++++..++...++.+. +. ..+...++. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 356899999999999998887764 3 48999999999988755443221 11 112334444 5
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
++.+||+|+.|+|.+..+ +. .+.+++++-|..
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~a 223 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINA 223 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEe
Confidence 689999999999865422 11 234556766543
No 354
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.11 E-value=0.094 Score=44.79 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--cc--cc--cc
Q 008576 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VL--DY--ES 223 (561)
Q Consensus 150 V~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~--~~--~~ 223 (561)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+. +.+. .-+.. ++ .+ ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-----------~~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR-----------EEGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----------HTTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-----------hccc----------ccccccchhhhHHhhcC
Confidence 67999999999999999997779999999999877644 2221 00111 00 11 13
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+.+||.||.+.+++ ..-..+...+.+..+.-.|++-
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence 67899999988754 3333333444444444455543
No 355
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.09 E-value=0.027 Score=57.51 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=60.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|.++...+..+... --+|.+|++++++.++..+.++ +.+ + .+...++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHH
Confidence 46899999999999998877653 2489999999999876543321 111 0 22334444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+.+||+|+.|++.... ++. .+.+++++.|....|
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence 8999999998874432 221 124567776654443
No 356
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.08 E-value=0.059 Score=58.07 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999887653
No 357
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.05 E-value=0.027 Score=45.68 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeC
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 178 (561)
-++++|+|.|.+|.+++..+... +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999986
No 358
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.04 E-value=0.046 Score=53.04 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc---EEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 179 (561)
+||.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999975 9999998
No 359
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.019 Score=57.34 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=52.8
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.|. +|..+|..|...|.+|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6999999987 999999999999999999986532211 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||.|++-.--+.. ..++++++|+...+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999974321222 24678888776443
No 360
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.02 Score=57.41 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.6
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCC
Q 008576 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~-mG~~iA~~la~~G~~V~l~d~~ 179 (561)
++|+|||.|. .|.+++..|...|.+|+++++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5899999997 9999999999999999999874
No 361
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.012 Score=59.35 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (561)
+++.|+|+|.+|.+++..|+..|.+ |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 362
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.97 E-value=0.039 Score=57.11 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEcCccchHHHHHHHHhC
Q 008576 148 KKVAILGGGLMGSGIATALILS 169 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~ 169 (561)
.||+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999998765
No 363
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.97 E-value=0.0094 Score=62.25 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (561)
++|.|||+|-||...|.+|+.+| .+|++.+|+.+++.+..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 58999999999999999999999 58999999999877644
No 364
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.95 E-value=0.022 Score=63.68 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=63.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 225 (561)
.+|.|+|.|.+|..+++.|.++|++|+++|.|+++++.+.+ .|.. ...+..+-.+.+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 58999999999999999999999999999999998876431 2210 000000000011 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+||.||.+++++.. -..+...+.+..++-.|++-..+
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 99999999986543 33444455555555556654333
No 365
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.93 E-value=0.031 Score=60.36 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-.||.|+|+|.+|...+..+...|..|+++|++.++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999876644
No 366
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.93 E-value=0.015 Score=58.46 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+|..+.+++..|+..|. +|+++||+.++.+...
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999997 7999999998876644
No 367
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.90 E-value=0.022 Score=63.19 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--cccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~ 225 (561)
.+|.|+|.|.+|..+|+.|.+.|++|+++|.|+++++.+.+ .|.. ...+...-...+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCe------EEEcCCCCHHHHHhcCcc
Confidence 58999999999999999999999999999999998876442 1210 000000000011 2367
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeee
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s 260 (561)
+||.||.+++++.+.. .+...+....+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998765433 233334444443345543
No 368
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.87 E-value=0.4 Score=46.82 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=74.6
Q ss_pred cccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc---c-CccceecccccCCCCCCC
Q 008576 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---Y-SKDRIVGAHFFSPAHVMP 293 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~---~-~~~r~ig~h~~~P~~~~~ 293 (561)
++|.++++++|++|.-.|..- ..-.+++++.+.++.++|| +||.++|...+...+ . ..-.+..+||-.= ..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV-Pgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV-PEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCC-CCCC
Confidence 456788999999999998542 2347788899999999987 577788876655443 2 2234555665431 1222
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
.-..+.-...+++.++++.++.+..|+.++++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222334456789999999999999999999885
No 369
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.82 E-value=0.22 Score=47.64 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=79.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+.. +...+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence 589999999999999999999999999998766 22222 22333221 1111112345667
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCC--CCCeEEEEeCCCCc
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t~ 304 (561)
+++||.|+. |.++-+.+++...+ ..+++ |.. ..|+. ..|+.|.. ..++..-+.+...+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999886 55666666554433 33332 222 12221 45556653 45666666666677
Q ss_pred HHHHHHHHHHHHh
Q 008576 305 PQVIVDLLDIGKK 317 (561)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (561)
|.....++.-...
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7776666655544
No 370
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.80 E-value=0.016 Score=46.22 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
||+|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
No 371
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.77 E-value=0.015 Score=59.50 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|..+..-+..++. .++ +|.+|+++++++++..+++++ + + -.+...++. ++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~a 189 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEA 189 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhh
Confidence 3589999999999998887765 344 799999999988775543221 0 1 123344555 45
Q ss_pred cCCCCEEEEeccCCh--hhHHHHHHHHHhhcCCCceeeecCC
Q 008576 224 FKDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 224 l~~aDlVieav~e~~--~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
+++||+|+.|++... .+ +. ...+++++.|.+..|
T Consensus 190 v~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 190 VRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp HTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred cccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence 899999999987543 21 11 134567776655444
No 372
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.74 E-value=0.02 Score=59.08 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999998 899999874
No 373
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.3 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+-++|.|||+|..|.++|..|+..|++|+++|.++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 346899999999999999999999999999997653
No 374
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.67 E-value=0.011 Score=62.84 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|.+|+|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3699999999999999999999999999999875
No 375
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.66 E-value=0.056 Score=55.77 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=59.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (561)
.++++|||+|..+...+..+..- . .+|++|++++++.++..+++.+ .+ + .+...++. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 46899999999998887655542 3 4899999999988775544321 11 0 12334444 45
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.+||+|+-|++.... ..++. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999864310 01111 1245778766544443
No 376
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.60 E-value=0.037 Score=55.12 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=26.0
Q ss_pred eEEEEEc-CccchHHHHHHHHh-CCCcEE-EEeCC
Q 008576 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (561)
Q Consensus 148 ~kV~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~ 179 (561)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5999999 59999999999986 477755 57743
No 377
>PRK06153 hypothetical protein; Provisional
Probab=95.59 E-value=0.024 Score=58.62 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|+|||+|..|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999997 89999976
No 378
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.019 Score=55.55 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57888976 999999999999999999999999876554
No 379
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.55 E-value=0.058 Score=58.11 Aligned_cols=42 Identities=36% Similarity=0.404 Sum_probs=37.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
..++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 357999999999999999999999999999999998876543
No 380
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.53 E-value=0.042 Score=54.82 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+|..+.+++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 489999999999999999999997 599999999876653
No 381
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.50 E-value=0.024 Score=56.01 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=36.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 37888877 88999999999999999999999998777655443
No 382
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.48 E-value=0.027 Score=50.34 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 68999999999999999999998 699999773
No 383
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.48 E-value=0.017 Score=60.86 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=33.3
Q ss_pred eEEEEEcCccchHHH-HHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
+||+++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 489999999999865 788888999999999988766553
No 384
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.47 E-value=0.78 Score=44.94 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=73.1
Q ss_pred cccccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHh---hcc-CccceecccccCCCCCCC
Q 008576 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTY-SKDRIVGAHFFSPAHVMP 293 (561)
Q Consensus 218 ~~~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~-~~~r~ig~h~~~P~~~~~ 293 (561)
++|.++++++|++|.=.|..- ..-.+++++.+.++.++|| +||.++|...+.. .+. ..-.+..+||-.=| .++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP-gt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP-EMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCC-CCC
Confidence 456788999999999998542 2347788889999999987 4777777664443 333 23445566664311 121
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEc
Q 008576 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (561)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (561)
-=.++.-...+++.++++.++.+..|+.++.+.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 111223446789999999999999999999875
No 385
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.42 E-value=0.041 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
++|.|||+|..+.+|+..|+..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999886 7999999965
No 386
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.17 Score=55.22 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 387
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.062 Score=53.07 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=66.0
Q ss_pred HHHHhhccCCCCCCCCCCCCCcccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 008576 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (561)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (561)
.+||......|.. -+-|.|||+|..|+-.+..|++.|. ++.++|.++-.+..... ...+.+..-|
T Consensus 61 ~aFfGee~m~kl~-----------~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNr---Hs~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLT-----------NSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNR---HSCATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhc-----------CcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhh---hhhhhHhhcC
Confidence 3677776655541 2369999999999999999999998 68899988765543221 1111111112
Q ss_pred CCCHHHHHhhhcccccc------------ccccc--cCCCCEEEEeccCChhhHHHHHHH
Q 008576 202 KMTQEKFEKTISLLTGV------------LDYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (561)
Q Consensus 202 ~~~~~~~~~~~~~i~~~------------~~~~~--l~~aDlVieav~e~~~~k~~v~~~ 247 (561)
.-....+...++.|.+. ++.++ .++-|+||+|+- |.+.|.++++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciD-NidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCID-NIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhh-hhhhhhHHHHH
Confidence 11111122222222221 12222 477899999984 78888887764
No 388
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.37 E-value=0.053 Score=46.71 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred eEEEEEc----CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 148 ~kV~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
++|+||| -+.+|.-+...|.++|++|+.++...+.+. .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5899999 588999999999999999999986653221 1223344544
Q ss_pred c-CCCCEEEEeccCChhhHHHHHHHHHhhc
Q 008576 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYC 252 (561)
Q Consensus 224 l-~~aDlVieav~e~~~~k~~v~~~l~~~~ 252 (561)
. ...|+++.++| .+..-++++++.+.-
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG 79 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC
Confidence 4 68999999998 566667788776653
No 389
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.36 E-value=0.054 Score=53.43 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+ |.+|..++..|+.+|++|++.+++++.++..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999977 9999999999999999999999998766543
No 390
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.33 E-value=0.15 Score=57.11 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=61.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc--ccc
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESF 224 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l 224 (561)
-++|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+ .|.. -..+..+-.+-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMK------VFYGDATRMDLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCe------EEEEeCCCHHHHHhcCC
Confidence 368999999999999999999999999999999999877542 1210 000000000011 236
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceee
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~ 259 (561)
.++|+||.++.++. .-..+...+.++.++-.|++
T Consensus 463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 78999999996543 33334444445444444554
No 391
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.31 E-value=0.064 Score=55.46 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=56.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hccccccccccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYES 223 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~ 223 (561)
+.||+|+|+|.||..++..+... +++|+ +.|.+++......... .++. .+.. +...... -..+....+++.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~-~~~~~~~~~~~i~V~~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVAD-PEREKAFEEAGIPVAGTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccC-ccccccccCCceEEcCChhH
Confidence 35999999999999999988765 66755 5566654333211100 0000 0000 0000000 012333334433
Q ss_pred -cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCC
Q 008576 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 224 -l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+.++|+||+|.+... -.+... .++..++.+++|++.
T Consensus 75 l~~~vDVVIdaT~~~~--~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 75 LLEKADIVVDATPGGV--GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hhccCCEEEECCCchh--hHHHHH---HHHHCCCEEEEcCCC
Confidence 568999999998542 223332 334456666666664
No 392
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.30 E-value=0.14 Score=55.60 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
...+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 34578999999999999999999999999999987643
No 393
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.25 E-value=0.056 Score=45.43 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 226 (561)
++|.|||+|.+|..=++.|++.|.+|+++..+.+..+ +.+. +. ...+ +.+.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 6899999999999999999999999999998851111 1111 00 1112 45889
Q ss_pred CCEEEEeccCChhhHHHHHHHH
Q 008576 227 VDMVIEAIIENVSLKQQIFADL 248 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l 248 (561)
+|+||.|.. +..+.+.+.+..
T Consensus 61 ~~lV~~at~-d~~~n~~i~~~a 81 (103)
T PF13241_consen 61 ADLVFAATD-DPELNEAIYADA 81 (103)
T ss_dssp ESEEEE-SS--HHHHHHHHHHH
T ss_pred heEEEecCC-CHHHHHHHHHHH
Confidence 999997764 555555555443
No 394
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.027 Score=54.67 Aligned_cols=39 Identities=36% Similarity=0.467 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 57888886 9999999999999999999999998776553
No 395
>PRK08223 hypothetical protein; Validated
Probab=95.20 E-value=0.054 Score=54.09 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|||+|.+|+.++..|+..|. +++++|.|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 589999999999999999999997 799999874
No 396
>PRK06196 oxidoreductase; Provisional
Probab=95.19 E-value=0.043 Score=56.07 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=50.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|.|+ |.+|..+|..|+..|++|++.+++++.++...+.+.. -..+..+..+.+++.+....+. +....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~--v~~~~~Dl~d~~~v~~~~~~~~-----~~~~~ 99 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG--VEVVMLDLADLESVRAFAERFL-----DSGRR 99 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh--CeEEEccCCCHHHHHHHHHHHH-----hcCCC
Confidence 56788877 8999999999999999999999998877655443321 0111222233333333222211 12456
Q ss_pred CCEEEEec
Q 008576 227 VDMVIEAI 234 (561)
Q Consensus 227 aDlVieav 234 (561)
.|+||.+.
T Consensus 100 iD~li~nA 107 (315)
T PRK06196 100 IDILINNA 107 (315)
T ss_pred CCEEEECC
Confidence 88888875
No 397
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.16 E-value=0.022 Score=56.43 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
.|.|=|+ +.+|..||..+++.|..+.+||+|.+..++..+.+
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~ 82 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEI 82 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHH
Confidence 3444455 57899999999999999999999998877655443
No 398
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.037 Score=55.98 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776544
No 399
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.05 Score=53.78 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=36.9
Q ss_pred ceEEEEEcC-c-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 147 VKKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 147 ~~kV~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
-+++.|.|+ | .+|.+++..|+..|++|++.|++++.++...+.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367889997 6 6999999999999999999999988777655443
No 400
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.25 Score=53.21 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
No 401
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.037 Score=54.81 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEAR 51 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 45677776 7899999999999999999999999877665433
No 402
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.035 Score=54.06 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=34.8
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++++.|.|+ |.+|..++..|+++|++|++.+++++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3568888886 999999999999999999999999876554
No 403
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.034 Score=54.37 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+..|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888887 9999999999999999999999998765543
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.027 Score=55.66 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
|++|.|+|+ |.+|..++..|++.|++|++++++.+.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 367888976 9999999999999999999999998876653
No 405
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.033 Score=54.80 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|+..|++|++.+++++.++...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 89999999999999999999999987765544
No 406
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.032 Score=55.81 Aligned_cols=42 Identities=33% Similarity=0.489 Sum_probs=33.0
Q ss_pred ceEEE-EEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 147 VKKVA-ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 147 ~~kV~-VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
|+|++ |.|+|.+|..+|..|+ .|++|++.+++.+.++...+.
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~ 43 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKT 43 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHH
Confidence 34554 4588999999999996 799999999998876654433
No 407
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.00 E-value=0.061 Score=56.33 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=51.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-c
Q 008576 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (561)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++.+.+ . +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~----~-~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY----P-QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----C-CC----------ceEEEeCCHHH
Confidence 46899999999999999888763 23 89999999998877554332211 0 10 013334454 4
Q ss_pred ccCCCCEEEEecc
Q 008576 223 SFKDVDMVIEAII 235 (561)
Q Consensus 223 ~l~~aDlVieav~ 235 (561)
.+.+||+|+-|++
T Consensus 220 av~~ADIVvtaT~ 232 (379)
T PRK06199 220 VVRGSDIVTYCNS 232 (379)
T ss_pred HHcCCCEEEEccC
Confidence 5889999998885
No 408
>PRK06194 hypothetical protein; Provisional
Probab=94.95 E-value=0.045 Score=54.89 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.+++..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987766543
No 409
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.90 E-value=0.033 Score=54.85 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|++ .+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 467777885 799999999999999999999984
No 410
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.89 E-value=0.075 Score=56.75 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=27.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (561)
.-||+|||+|.+|.+++..|.++ |. + +.++|++.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 35899999999999999877553 33 3 4567888654
No 411
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.88 E-value=0.021 Score=59.33 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 799999874
No 412
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.041 Score=54.14 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=34.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
-++|.|+|+ |.+|..++..|++.|++|++.++++..++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 368999988 999999999999999999999999876554
No 413
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.06 Score=53.72 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=51.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccc-cccC
Q 008576 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 225 (561)
++|+|||.|.. |.++|..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 68999999887 99999999999999998753221 12 2368
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
+||+||.|++-.- ++.. ..++++++++...
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence 8999999998322 2222 5678899886543
No 414
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.84 E-value=0.027 Score=58.77 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 489999999999999999999997 89999987
No 415
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.058 Score=53.66 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888877 89999999999999999999999998876543
No 416
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.066 Score=53.30 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=33.5
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6788876 89999999999999999999999987765533
No 417
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.83 E-value=0.052 Score=53.05 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 58899987 89999999999999999999999997765543
No 418
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.81 E-value=0.21 Score=50.73 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=97.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--------CCcEEE---EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008576 147 VKKVAILGGGLMGSGIATALILS--------NYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~--------G~~V~l---~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (561)
..+|+|+|.|++|++++..|.++ |.++.+ .|++...... . .... ........
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~-~-------------~~~~---~~~~~~~~ 65 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD-L-------------DLLN---AEVWTTDG 65 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc-c-------------cccc---hhhheecc
Confidence 46999999999999999988775 344433 3444333210 0 0000 00000000
Q ss_pred cccc--cccccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCc-eeeecCCCCCHH--HHHhhccCccceecccccCCCC
Q 008576 216 TGVL--DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAH 290 (561)
Q Consensus 216 ~~~~--~~~~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~P~~ 290 (561)
.... +.-...+.|+|||+++-+...-+. +..+.+.+..+. +|+.|-..+... ++.+..... |.+++.-+.
T Consensus 66 ~~~~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~----g~~l~yEAt 140 (333)
T COG0460 66 ALSLGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKN----GVKLLYEAT 140 (333)
T ss_pred cccccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHh----CCeEEEEee
Confidence 0001 112346789999999987777775 566666666666 455555444332 444333211 333332221
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCc-
Q 008576 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFL-LVERGTDLYLIDRAITKFGMPM- 368 (561)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~-l~~~G~~~~~ID~a~~~~G~~~- 368 (561)
. ..| + -.+..++..+. |.++..+.- |+|-. +|..+. |.+++.+.+|+-+-.+.+|+.-
T Consensus 141 V------~gG--i--PiI~~lr~~l~--g~~I~~i~G----IlNGT----~NyIlt~m~~~~~~f~dal~eAq~lGyAE~ 200 (333)
T COG0460 141 V------GGG--I--PIIKLLRELLA--GDEILSIRG----ILNGT----TNYILTRMEEGGLSFEDALAEAQELGYAEA 200 (333)
T ss_pred e------ccC--c--chHHHHHhhcc--cCceEEEEE----EEecc----HHHHHHHHHccCCCHHHHHHHHHHcCCCCC
Confidence 1 111 1 13344444443 444444421 22222 233322 2334457777666666566631
Q ss_pred cHHHHHHHhchHHHHHHH
Q 008576 369 GPFRLADLVGFGVAIATG 386 (561)
Q Consensus 369 GPf~~~D~~Gld~~~~~~ 386 (561)
=| ..|.-|+|+..+..
T Consensus 201 DP--t~DleG~DaA~Kl~ 216 (333)
T COG0460 201 DP--TDDLEGIDAARKLV 216 (333)
T ss_pred CC--CCCccchHHHHHHH
Confidence 12 45888999877643
No 419
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.77 E-value=0.071 Score=55.22 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccccc-
Q 008576 147 VKKVAILGG-GLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (561)
|.||+|||+ |.+|..++..|... +++++. .++ .+..+... +. .+.+. .. .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~----~~------~~~~~-----~~-~~~~-~~~~~~ 63 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLS----DV------HPHLR-----GL-VDLV-LEPLDP 63 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchH----Hh------Ccccc-----cc-cCce-eecCCH
Confidence 469999997 99999999999887 677654 553 22111110 00 00000 00 0000 11111
Q ss_pred -ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 223 -~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
...++|+|+.|+|... -.++..++ ...++.|+++++...+.
T Consensus 64 ~~~~~vD~Vf~alP~~~--~~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 64 EILAGADVVFLALPHGV--SMDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHH---HhCCCEEEECCcccCCC
Confidence 3467999999999642 23333333 34688888998877653
No 420
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.75 E-value=0.6 Score=46.68 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=89.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHh-hhcccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEK-TISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~-~~~~i~~~~~~~ 222 (561)
..|+|+|+|..|.+.++-...+|. +++.+|+|+++.+.+++ -|. +.+.+... ....|.--+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~-----------fGaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE-----------FGATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh-----------cCcceecChhhccccHHHHHHHHh---
Confidence 579999999999999999988886 89999999999887653 221 11211111 111111111
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCCCCCCeEE--EEeC
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~ 300 (561)
+ .+.|+-+||+- +.++.++.+....+.-....+|-...++. .+.+|+|.=.. .+.+. +..|
T Consensus 260 d-gGvDysfEc~G-~~~~m~~al~s~h~GwG~sv~iGv~~~~~--------------~i~~~p~~l~~-GR~~~Gs~FGG 322 (375)
T KOG0022|consen 260 D-GGVDYSFECIG-NVSTMRAALESCHKGWGKSVVIGVAAAGQ--------------EISTRPFQLVT-GRTWKGSAFGG 322 (375)
T ss_pred c-CCceEEEEecC-CHHHHHHHHHHhhcCCCeEEEEEecCCCc--------------ccccchhhhcc-ccEEEEEeccc
Confidence 1 67999999996 45555555443332222222332222221 12222221111 11111 1122
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEEcccccchhhhHHHHHHHHHHHHHHcCC
Q 008576 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT 352 (561)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nrl~~~~~~ea~~l~~~G~ 352 (561)
-+...+.=..+..+++. .+ +-.-||.+++-+--+|+|+.++.+|-
T Consensus 323 ~K~~~~iP~lV~~y~~~----~l---~ld~~ITh~l~f~~In~AF~ll~~Gk 367 (375)
T KOG0022|consen 323 FKSKSDIPKLVKDYMKK----KL---NLDEFITHELPFEEINKAFDLLHEGK 367 (375)
T ss_pred ccchhhhhHHHHHHHhC----cc---chhhhhhcccCHHHHHHHHHHHhCCc
Confidence 22233333333333332 11 12457888888888999999998873
No 421
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.73 E-value=0.11 Score=56.78 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 46778877 99999999999999999999999998776544
No 422
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.73 E-value=0.074 Score=51.75 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.2
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
||.|||+|.+|+.++..|+..|. +++++|.|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 789999763
No 423
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.043 Score=54.17 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999988776655443
No 424
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.72 E-value=0.046 Score=53.74 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 99999999999999999999999988766543
No 425
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.69 E-value=0.049 Score=53.41 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|+|+ |.+|..+|..|+..|++|++.+++++.++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 36888886 899999999999999999999999887654
No 426
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.23 Score=53.68 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=32.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
.+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 36899999999999999999999999999998753
No 427
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.67 E-value=0.067 Score=52.68 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=36.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
.++|.|.|+ |.+|..++..|+++|++|++.+++++..++..+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 357888887 9999999999999999999999999877665543
No 428
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.67 E-value=0.053 Score=52.74 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 789998763
No 429
>PRK09186 flagellin modification protein A; Provisional
Probab=94.65 E-value=0.062 Score=52.73 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLES 47 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 57888876 8999999999999999999999998877665433
No 430
>PRK08643 acetoin reductase; Validated
Probab=94.64 E-value=0.05 Score=53.50 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35667765 89999999999999999999999987766544
No 431
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.63 E-value=0.06 Score=52.72 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (561)
.||.|+|+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 7899998753
No 432
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.60 E-value=0.066 Score=52.29 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-----------CcEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~ 180 (561)
.||.|||+|..|+.++..|++.| .+++++|.|.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999864 2899999763
No 433
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.60 E-value=0.067 Score=52.49 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|+..|++|++++++++..+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 57889985 99999999999999999999999988776544
No 434
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.059 Score=52.98 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777776 899999999999999999999999887766543
No 435
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.59 E-value=0.025 Score=59.42 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
.||.|||+|..|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999987
No 436
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.58 E-value=0.065 Score=54.81 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (561)
+||.|.|+ |.+|+.++..|.++||+|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 38999986 9999999999999999999999987543
No 437
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.045 Score=53.96 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=33.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~ 41 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQA 41 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 47788875 899999999999999999999999877654
No 438
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.53 E-value=0.036 Score=58.89 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
No 439
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.53 E-value=0.085 Score=52.58 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=51.1
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||.| ..|.++|..|.+.|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 699999998 8999999999999999999864332221 13578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeec
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~ 261 (561)
||+||-|+.-.--+.. ..++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDv 228 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDI 228 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEe
Confidence 9999999963322222 345788887653
No 440
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.52 E-value=0.069 Score=54.56 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=36.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+++.|.|+ +.+|..+|..|++.|++|++.+|+.+..+++.+.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45666665 88999999999999999999999998877766554
No 441
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.52 E-value=0.044 Score=53.98 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|+++|++|++.+++.+.++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA 47 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46888876 99999999999999999999999988766543
No 442
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.049 Score=53.51 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 46777777 899999999999999999999999887665443
No 443
>PRK05650 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.073 Score=52.91 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=34.2
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+|.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6788876 99999999999999999999999988766544
No 444
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.06 Score=55.51 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=36.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.+++..+.+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~ 51 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEEC 51 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56778887 89999999999999999999999998877655443
No 445
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.43 E-value=0.14 Score=53.33 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (561)
+|+|+|+|.||.-.++.+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999998888888885 78888999999987653
No 446
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.42 E-value=0.11 Score=46.17 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=52.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|+|- ...|..+|..|.+.|.+|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 69999988 56699999999999999999985432221 23678
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||-++.-...++. +.+++++++++..
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg 100 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCS 100 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcC
Confidence 9999999975533333 3467899887543
No 447
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.41 E-value=0.051 Score=51.36 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHhcCCCCCCCcHHHHHHh
Q 008576 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADS 512 (561)
Q Consensus 460 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~p~~~gGp~~~~d~ 512 (561)
.+..||+.++++||.-+++..|+. +..|+|..|..|+|.+...-||++.+..
T Consensus 189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence 378999999999999999999999 7999999999999988888899998754
No 448
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.41 E-value=0.16 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=27.5
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~---G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|+ +.+|.++|..|++.|++|++.+++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~ 42 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPD 42 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 45677787 4899999999999999999887654
No 449
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.41 E-value=0.09 Score=51.10 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 899999764
No 450
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.046 Score=54.10 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.+++..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVA 47 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57777876 99999999999999999999999987665533
No 451
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.38 E-value=0.077 Score=52.16 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 799998763
No 452
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.073 Score=54.95 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~ 51 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE 51 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 57888877 8999999999999999999999999877665443
No 453
>PRK09242 tropinone reductase; Provisional
Probab=94.36 E-value=0.067 Score=52.65 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57788876 89999999999999999999999988766544
No 454
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.076 Score=51.88 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46777775 99999999999999999999999988766543
No 455
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.29 E-value=0.26 Score=53.14 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=77.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccC
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 225 (561)
++|.|||+|.++..=+..|+..|.+|+++... ++- . .+...+.+. .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~-----------~l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-T-----------AWADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H-----------HHHhCCCEE---------EEeCCCChHHhC
Confidence 69999999999999999999999999998543 221 1 112223221 011011124588
Q ss_pred CCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhccCccceecccccCCC--CCCCeEEEEeCCCC
Q 008576 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (561)
Q Consensus 226 ~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t 303 (561)
++++||.|+. |.++-+. |...+....+++ |...- |+ ..+|+.|. ...+++.-+.+...
T Consensus 72 ~~~lv~~at~-d~~~n~~----i~~~a~~~~~lv-N~~d~-----------~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAATD-DDAVNQR----VSEAAEARRIFC-NVVDA-----------PK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECCC-CHHHhHH----HHHHHHHcCcEE-EECCC-----------cc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 9999988865 4444444 444454444554 33221 11 12455563 34667777777778
Q ss_pred cHHHHHHHHHHHHh
Q 008576 304 SPQVIVDLLDIGKK 317 (561)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (561)
+|.....+++-++.
T Consensus 132 sP~~a~~lr~~ie~ 145 (457)
T PRK10637 132 SPVLARLLREKLES 145 (457)
T ss_pred CcHHHHHHHHHHHH
Confidence 88777777666554
No 456
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=94.29 E-value=0.13 Score=48.94 Aligned_cols=170 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhcccccccccc
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYE 222 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (561)
+|+.|.|.. .++-+||+.|.++|.++...-.++ ++++-.+.+.+.+.. ..+.+.-+.++++.....+. +
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~-----~ 80 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK-----K 80 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH-----H
Confidence 577777764 578899999999999987776665 333322222222211 12334444444554444333 3
Q ss_pred ccCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHHHHHhhc----cCccceecccccCCCCCCCeEEEE
Q 008576 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHVMPLLEIV 298 (561)
Q Consensus 223 ~l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~~~r~ig~h~~~P~~~~~lveiv 298 (561)
....-|.+|-|+--.+ |.++-.+..+.-.++-.++-+.|+.+...++... .....++.+-|+-....+|.--++
T Consensus 81 ~~g~lD~lVHsIaFa~--k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvM 158 (259)
T COG0623 81 KWGKLDGLVHSIAFAP--KEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVM 158 (259)
T ss_pred hhCcccEEEEEeccCC--hHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchh
Confidence 4667888888874211 2222222222222233445567777777766544 334556666555333322222232
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEEcc
Q 008576 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (561)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (561)
.- .+...-..++-+...+|+.-++|+.
T Consensus 159 Gv--AKAaLEasvRyLA~dlG~~gIRVNa 185 (259)
T COG0623 159 GV--AKAALEASVRYLAADLGKEGIRVNA 185 (259)
T ss_pred HH--HHHHHHHHHHHHHHHhCccCeEEee
Confidence 22 1233333445556678998888874
No 457
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.066 Score=52.24 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=35.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 67888886 99999999999999999999999988766544
No 458
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.25 E-value=0.3 Score=49.22 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=55.7
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccccccc
Q 008576 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 224 (561)
.||+|||+|.+|..+...+.+. +.++ .++|++++...... ..+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~---------A~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR---------ARRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH---------HHHcCCCcccCCHHHHHh-------CcCC
Confidence 5899999999999977777754 5665 47899886432111 11223211 011222111 0124
Q ss_pred CCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCC
Q 008576 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (561)
Q Consensus 225 ~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 265 (561)
.+.|+|++|++.... .+.. ......++.++.+++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a---~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHA---AKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHH---HHHHHcCCeEEECCccc
Confidence 679999999985422 2222 22345677777777653
No 459
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.24 E-value=0.081 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.5
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
+.+.|.|++ .+|.++|..|++.|++|++.+++.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH
Confidence 356666886 79999999999999999999988643
No 460
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.085 Score=53.58 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+..+.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56777776 99999999999999999999999988776554433
No 461
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.23 E-value=0.12 Score=47.53 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=30.5
Q ss_pred ccceEEEEEcCccchHHHHHH-HH-hCCCc-EEEEeCCHHHH
Q 008576 145 RRVKKVAILGGGLMGSGIATA-LI-LSNYP-VILKEVNEKFL 183 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~-la-~~G~~-V~l~d~~~~~~ 183 (561)
.++.+|.|||+|++|.+++.. +. ++|.+ |-++|.+++.+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V 123 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV 123 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence 457899999999999999853 33 45776 45889999854
No 462
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.22 E-value=0.08 Score=52.81 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|++|++++++.+.++...
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777776 89999999999999999999999987665543
No 463
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.20 E-value=0.16 Score=49.28 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=29.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEE-EEeC
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 178 (561)
-++|+|.|.|.+|..+|..|...|.+|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3699999999999999999999999988 7787
No 464
>PRK05868 hypothetical protein; Validated
Probab=94.19 E-value=0.041 Score=57.74 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
|++|.|||+|.-|...|..|++.|++|+++|++++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 56899999999999999999999999999998765
No 465
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.19 E-value=0.07 Score=52.78 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 45 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLAS 45 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 889999999999999999999999877654
No 466
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.19 E-value=0.17 Score=49.08 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58889987 8899999999999999999999998876654
No 467
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.17 E-value=0.066 Score=52.21 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+++|++|++.+++.+.+...
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888885 9999999999999999999999998765543
No 468
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.11 Score=51.46 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|+..|++|++.+++++.++..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888877 8999999999999999999999998776543
No 469
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.098 Score=51.91 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (561)
+.+.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI 52 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35566676 78999999999999999999999998876655443
No 470
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.14 E-value=0.19 Score=47.09 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=56.1
Q ss_pred ceEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cc---
Q 008576 147 VKKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD--- 220 (561)
Q Consensus 147 ~~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~--- 220 (561)
=++|+|||-+ ..|.++|..|.+.|..|+++|++--.+-. +.+.+ +-+.+ .+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~ 118 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEA 118 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhh
Confidence 3699999985 56999999999999999999865432210 00000 00001 11
Q ss_pred -c-cccCCCCEEEEeccCChh-hHHHHHHHHHhhcCCCceeeecCCC
Q 008576 221 -Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTST 264 (561)
Q Consensus 221 -~-~~l~~aDlVieav~e~~~-~k~~v~~~l~~~~~~~~ii~s~tS~ 264 (561)
+ +.+++||+||-|++-.-- ++.+ .++++++++.....
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~ 158 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASI 158 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCC
Confidence 2 347899999999974332 3333 46789988765443
No 471
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.13 E-value=0.022 Score=57.01 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (561)
||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999997 78888865
No 472
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.082 Score=52.36 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357888876 68999999999999999999999987766544
No 473
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.12 E-value=0.075 Score=48.40 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=46.4
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|.|||-+ ..|.+++..|.++|..|++++.....++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 699999996 5899999999999999999876543222 23578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS 263 (561)
||+||-|+.-.--++ ...++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--C
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCC
Confidence 999999996433232 235688888875443
No 474
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.06 Score=52.98 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFA 43 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888887 89999999999999999999999987765533
No 475
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.11 E-value=0.11 Score=50.02 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 699999999999999999999988 567789876
No 476
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.06 Score=52.64 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (561)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 57888877 9999999999999999999999998766543
No 477
>PRK07677 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.073 Score=52.27 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
+++.|.|+ |.+|..++..|++.|+.|++.+++.+.++...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36777776 78999999999999999999999987765543
No 478
>PRK14852 hypothetical protein; Provisional
Probab=94.10 E-value=0.055 Score=62.26 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (561)
.||+|||+|..|+.++..|+..|. +++++|-|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
No 479
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.07 E-value=0.25 Score=53.08 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
++|.|+|+|.+|.++|..|++.|++|+++|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5899999999999999999999999999998754
No 480
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.077 Score=53.69 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~ 50 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALA 50 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57788876 89999999999999999999999988766543
No 481
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.06 E-value=0.086 Score=51.77 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (561)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~ 51 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVA 51 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 46777776 899999999999999999999999887665443
No 482
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.05 E-value=1 Score=45.20 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=29.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 008576 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG 186 (561)
Q Consensus 147 ~~kV~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~ 186 (561)
=++|+|+|+|.+| ++|..++++ |++|+++|.+...-+++
T Consensus 182 G~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 182 GKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred CcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 3689999998866 566666666 99999999987554443
No 483
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.05 E-value=0.11 Score=50.33 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=34.5
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|.|+ |.+|..++..|+++|++|++++++++..+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~ 44 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA 44 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence 368999987 999999999999999999999999876654
No 484
>PRK07877 hypothetical protein; Provisional
Probab=94.02 E-value=0.037 Score=62.36 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCH
Q 008576 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (561)
.||+|||+| +|+.+|..|+..|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899999764
No 485
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.088 Score=51.64 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=35.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888877 89999999999999999999999988766544
No 486
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.01 E-value=0.058 Score=55.50 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008576 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (561)
Q Consensus 149 kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (561)
.|+|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
No 487
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.00 E-value=0.56 Score=50.69 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=32.2
Q ss_pred cceEEEEEcCccchHH-HHHHHHhCCCcEEEEeCCHH
Q 008576 146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (561)
Q Consensus 146 ~~~kV~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (561)
+.++|.|||.|..|.+ +|..|.+.|++|+++|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3468999999999999 79999999999999998754
No 488
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.093 Score=50.90 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (561)
+++.|.|+ +.+|.++|..|++.|++|++.+++++.+++..+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 48 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ 48 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46777777 5699999999999999999999999887765543
No 489
>PRK06182 short chain dehydrogenase; Validated
Probab=93.95 E-value=0.08 Score=52.71 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=34.0
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (561)
.++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~ 42 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED 42 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 357888886 899999999999999999999999877654
No 490
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.95 E-value=0.12 Score=51.32 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCH
Q 008576 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 148 ~kV~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
+.+.|.|++ .+|.++|..|++.|+.|++.+++.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch
Confidence 457777986 699999999999999999999873
No 491
>PLN00016 RNA-binding protein; Provisional
Probab=93.93 E-value=0.12 Score=54.40 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.1
Q ss_pred cceEEEEE----cC-ccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008576 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (561)
Q Consensus 146 ~~~kV~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (561)
..+||.|+ |+ |.+|..++..|++.||+|++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998764
No 492
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.90 E-value=0.099 Score=51.37 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=35.1
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 147 ~~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
-++|.|.|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 467888877 89999999999999999999999987765543
No 493
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.1 Score=51.90 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=34.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 68889987 89999999999999999999999987765433
No 494
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.82 E-value=0.095 Score=51.59 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..++..|++.|++|++.|++.+..+...
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35777776 89999999999999999999999987665543
No 495
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.81 E-value=0.11 Score=51.25 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 148 ~kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 57888876 99999999999999999999999987766544
No 496
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.80 E-value=0.14 Score=53.63 Aligned_cols=102 Identities=18% Similarity=0.295 Sum_probs=60.0
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccc
Q 008576 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (561)
Q Consensus 146 ~~~kV~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (561)
..+||+|||+ |..|..+...|..+ .++|+.+..+.+.-+. +....... ..+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l-~~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHL-ITQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCccc-cCccc---------ccee-cCCHHH
Confidence 4569999999 99999999999998 7799988765433111 00000000 00000 0000 011123
Q ss_pred cCCCCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecCCCCCHH
Q 008576 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (561)
Q Consensus 224 l~~aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 268 (561)
++++|+||.|+|.. .-.++...+ ..++.|+++++..-..
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRLR 140 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhccC
Confidence 67899999999853 333444433 4578888888765443
No 497
>PRK07236 hypothetical protein; Provisional
Probab=93.79 E-value=0.065 Score=56.43 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=33.5
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008576 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (561)
Q Consensus 145 ~~~~kV~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (561)
+...+|+|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3457999999999999999999999999999998764
No 498
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.13 Score=49.70 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008576 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (561)
Q Consensus 149 kV~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (561)
|+.|.|+ |.+|.+++..|++.|++|++.+++.+.++...
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6888877 89999999999999999999999988766543
No 499
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.78 E-value=0.17 Score=50.35 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=53.2
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccccccccCC
Q 008576 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (561)
Q Consensus 148 ~kV~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 226 (561)
++|+|||-+ ..|..+|..|...|..|+++..+...+.+ .+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence 699999998 88999999999999999999876543322 3578
Q ss_pred CCEEEEeccCChhhHHHHHHHHHhhcCCCceeeecC
Q 008576 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (561)
Q Consensus 227 aDlVieav~e~~~~k~~v~~~l~~~~~~~~ii~s~t 262 (561)
||+||-|++-..-++. ..++++++|+...
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVg 224 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVG 224 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEee
Confidence 9999999963222222 2358899887644
No 500
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.75 E-value=0.078 Score=40.87 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=26.6
Q ss_pred EEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008576 152 ILGGGLMGSGIATALILSNYPVILKEVNE 180 (561)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (561)
|||+|.-|...|..|++.|++|+++|.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999775
Done!