Query 008578
Match_columns 561
No_of_seqs 294 out of 1892
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 4E-150 9E-155 1236.7 50.6 559 1-559 1-566 (636)
2 KOG2287 Galactosyltransferases 100.0 4.7E-51 1E-55 429.7 19.8 271 287-558 4-278 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.4E-44 3.1E-49 380.5 16.8 211 327-554 103-324 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 3.4E-41 7.3E-46 326.5 13.0 167 392-558 1-172 (195)
5 smart00276 GLECT Galectin. Gal 100.0 9.6E-32 2.1E-36 245.2 16.0 127 164-349 1-127 (128)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 3.7E-32 8.1E-37 283.1 12.3 164 375-554 77-269 (382)
7 PF00337 Gal-bind_lectin: Gala 100.0 2E-31 4.4E-36 243.4 13.8 132 163-349 1-133 (133)
8 cd00070 GLECT Galectin/galacto 100.0 5.3E-31 1.2E-35 239.7 15.6 127 163-348 1-127 (127)
9 KOG2288 Galactosyltransferases 100.0 7.7E-30 1.7E-34 252.2 15.0 185 375-561 8-207 (274)
10 KOG3587 Galectin, galactose-bi 99.9 1.7E-26 3.7E-31 214.9 14.7 137 161-351 3-140 (143)
11 PF02434 Fringe: Fringe-like; 99.5 9E-14 2E-18 141.0 7.1 161 378-555 6-169 (252)
12 KOG2246 Galactosyltransferases 99.0 8.3E-10 1.8E-14 117.5 8.7 147 375-556 88-237 (364)
13 PLN03153 hypothetical protein; 98.2 9.8E-06 2.1E-10 89.1 12.5 150 376-552 120-280 (537)
14 KOG3708 Uncharacterized conser 93.0 0.13 2.9E-06 56.8 5.0 131 377-551 25-159 (681)
15 PF01755 Glyco_transf_25: Glyc 92.9 0.99 2.2E-05 43.5 10.6 91 382-484 4-101 (200)
16 PF00535 Glycos_transf_2: Glyc 90.2 1.7 3.6E-05 38.6 8.4 155 382-549 4-168 (169)
17 cd06423 CESA_like CESA_like is 89.8 2.5 5.4E-05 37.4 9.2 90 461-550 71-170 (180)
18 PF13641 Glyco_tranf_2_3: Glyc 89.2 2.5 5.3E-05 40.8 9.4 159 380-549 3-174 (228)
19 cd06532 Glyco_transf_25 Glycos 88.5 1.7 3.8E-05 39.4 7.2 111 382-555 2-119 (128)
20 cd04196 GT_2_like_d Subfamily 88.3 2.4 5.2E-05 40.0 8.5 148 395-550 11-168 (214)
21 cd04192 GT_2_like_e Subfamily 86.3 10 0.00022 36.1 11.6 133 412-549 29-170 (229)
22 cd04186 GT_2_like_c Subfamily 84.8 16 0.00035 32.5 11.6 28 465-492 71-98 (166)
23 cd06433 GT_2_WfgS_like WfgS an 83.2 11 0.00024 34.8 10.0 90 459-549 66-157 (202)
24 cd02520 Glucosylceramide_synth 82.9 21 0.00046 33.9 12.1 106 412-549 31-139 (196)
25 cd04187 DPM1_like_bac Bacteria 82.1 3.3 7.1E-05 38.6 6.0 135 411-551 29-164 (181)
26 cd04179 DPM_DPG-synthase_like 80.1 2.8 6E-05 38.8 4.8 132 412-550 29-167 (185)
27 TIGR03472 HpnI hopanoid biosyn 79.5 26 0.00057 37.5 12.6 163 378-549 41-215 (373)
28 cd04184 GT2_RfbC_Mx_like Myxoc 79.5 53 0.0012 30.7 13.4 88 411-503 31-120 (202)
29 cd04185 GT_2_like_b Subfamily 75.1 25 0.00055 33.1 9.9 35 459-494 71-105 (202)
30 cd02510 pp-GalNAc-T pp-GalNAc- 69.8 1.1E+02 0.0025 31.1 13.9 36 459-494 74-109 (299)
31 cd02525 Succinoglycan_BP_ExoA 67.1 1.2E+02 0.0026 29.1 13.9 88 410-504 30-118 (249)
32 cd06435 CESA_NdvC_like NdvC_li 66.7 26 0.00057 33.9 8.1 27 468-494 84-110 (236)
33 KOG1594 Uncharacterized enzyme 64.8 20 0.00043 37.3 6.9 105 207-341 74-184 (305)
34 PRK10714 undecaprenyl phosphat 62.9 46 0.001 35.1 9.6 134 411-551 38-174 (325)
35 cd00761 Glyco_tranf_GTA_type G 62.5 66 0.0014 27.4 9.1 30 462-491 71-100 (156)
36 cd06421 CESA_CelA_like CESA_Ce 62.0 17 0.00036 34.9 5.7 83 467-549 83-175 (234)
37 cd06442 DPM1_like DPM1_like re 61.1 39 0.00084 32.2 8.0 83 467-550 77-167 (224)
38 cd04195 GT2_AmsE_like GT2_AmsE 61.0 52 0.0011 30.8 8.8 45 460-504 72-118 (201)
39 PF13506 Glyco_transf_21: Glyc 60.9 7.4 0.00016 37.4 2.9 94 454-549 17-116 (175)
40 cd06420 GT2_Chondriotin_Pol_N 59.7 63 0.0014 29.6 8.9 44 459-503 70-113 (182)
41 PLN02726 dolichyl-phosphate be 59.2 61 0.0013 32.0 9.3 133 411-551 40-183 (243)
42 cd02526 GT2_RfbF_like RfbF is 57.6 1.8E+02 0.0039 27.9 12.8 23 468-490 75-97 (237)
43 PRK11204 N-glycosyltransferase 55.6 1.3E+02 0.0028 32.4 11.7 107 377-493 53-159 (420)
44 TIGR01556 rhamnosyltran L-rham 55.1 70 0.0015 32.2 9.1 34 459-493 65-98 (281)
45 PF13632 Glyco_trans_2_3: Glyc 54.6 23 0.00049 33.4 5.1 77 471-549 1-87 (193)
46 cd04191 Glucan_BSP_ModH Glucan 52.0 74 0.0016 32.4 8.7 108 382-493 3-120 (254)
47 cd06434 GT2_HAS Hyaluronan syn 51.3 2.3E+02 0.0049 27.1 12.0 76 411-494 28-103 (235)
48 COG1216 Predicted glycosyltran 50.0 3.1E+02 0.0067 28.3 14.4 109 437-549 55-182 (305)
49 cd06439 CESA_like_1 CESA_like_ 48.6 2.6E+02 0.0057 27.1 12.4 120 376-505 27-147 (251)
50 cd06427 CESA_like_2 CESA_like_ 43.3 3.2E+02 0.007 26.6 11.8 36 459-494 75-110 (241)
51 TIGR03469 HonB hopene-associat 40.9 4.9E+02 0.011 27.9 13.6 83 411-494 70-159 (384)
52 COG1215 Glycosyltransferases, 37.9 72 0.0016 34.1 6.3 165 378-550 54-230 (439)
53 PRK14583 hmsR N-glycosyltransf 36.8 4.9E+02 0.011 28.5 12.7 77 411-493 104-180 (444)
54 COG3306 Glycosyltransferase in 36.4 65 0.0014 33.3 5.4 155 382-555 5-176 (255)
55 cd02522 GT_2_like_a GT_2_like_ 36.3 1E+02 0.0022 29.2 6.5 33 461-493 65-97 (221)
56 cd02514 GT13_GLCNAC-TI GT13_GL 36.0 1.9E+02 0.0042 31.0 9.1 83 459-549 88-174 (334)
57 cd04188 DPG_synthase DPG_synth 32.1 2.6E+02 0.0057 26.5 8.7 89 411-505 30-120 (211)
58 cd06438 EpsO_like EpsO protein 30.0 4.5E+02 0.0098 24.3 9.8 77 467-548 80-169 (183)
59 PF06439 DUF1080: Domain of Un 29.3 1.5E+02 0.0032 27.7 6.3 39 288-326 119-157 (185)
60 PF05412 Peptidase_C33: Equine 28.0 51 0.0011 29.7 2.6 29 453-481 47-81 (108)
61 TIGR03111 glyc2_xrt_Gpos1 puta 25.2 9.2E+02 0.02 26.4 12.8 35 459-493 122-156 (439)
62 COG4092 Predicted glycosyltran 24.8 1.5E+02 0.0033 31.2 5.7 95 392-490 20-116 (346)
63 cd06913 beta3GnTL1_like Beta 1 24.1 2E+02 0.0042 27.5 6.2 33 461-493 77-109 (219)
64 cd04190 Chitin_synth_C C-termi 23.8 71 0.0015 31.7 3.1 84 466-549 71-164 (244)
65 PTZ00334 trans-sialidase; Prov 21.7 7E+02 0.015 30.1 11.0 52 291-342 638-691 (780)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.9e-150 Score=1236.69 Aligned_cols=559 Identities=81% Similarity=1.290 Sum_probs=535.8
Q ss_pred CcccchhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCcccccCCCCCCCCCCCCcceeeccccccccccCCC
Q 008578 1 MKKWYGGVLIASLFMLLLLRYGFMKNPIGESYLTSLISSNASNPLEWTHTAAAPGVQDPENSSQVISIDAITFGLFAQRN 80 (561)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (561)
||||+||++|++|||+|+|||.++++|.++++++.++..|+|+||+|++++.+|++++|+|++++++.++++|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPENSSQVISTDTIVSSLFATRN 80 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHHHhcCCCCCCCcccccccccCCchhhcccCCCccccCCCccceeeccccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhchhhhhhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhccCCCCCccccccCCcCcccccccCCCCCC
Q 008578 81 ISKEEQQSLLTWNLLKQLINHSQVLSNGVEAIKEAGSAWNNLMASVEEEKLGYTNRSSVRKAKEKQCPHFLNKMNTTDLD 160 (561)
Q Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~sv~~~~~~~~~ 160 (561)
+|+|++++|++||+||+|++|||+||+|+|||+||+.||++|+++++++++++.++++..+.++++||++|+.|++++..
T Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~ 160 (636)
T PLN03133 81 ISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELG 160 (636)
T ss_pred CchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999888888888777677889999999999999998
Q ss_pred CCceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeeEEEeeEeCCCCCCCCCEEEEcCcccCCcccc
Q 008578 161 RSSFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGE 240 (561)
Q Consensus 161 ~~p~~~~lP~GL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpR~~~~~~~~~pvIV~Ns~~~~~~Wg~ 240 (561)
...|++.|||||.+|++|||+|+|+.++++|+|||+|+..+|++++||||||||||++||++++|+||||||+.+|+||.
T Consensus 161 ~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~ 240 (636)
T PLN03133 161 DSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGE 240 (636)
T ss_pred CCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccH
Confidence 88999999999999999999999999999999999999888888899999999999999999999999999993389999
Q ss_pred ceecCCCCCCcccccchhhhhhcccCCCCCCCCccc--ccccc-----CCCCCCccCCCCCCCCeEEEEEEEcCceEEEE
Q 008578 241 EVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVS--TRLNN-----SRTSKTKRFFPFKQGHLFVATIRVGSEGIQTT 313 (561)
Q Consensus 241 EeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~fPF~~G~~F~lti~~~~egf~v~ 313 (561)
||||++++|.++++||||++||||+|+|++++++++ +|+|+ +++.+..++|||++|++|++||+|+.|||||+
T Consensus 241 EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~ 320 (636)
T PLN03133 241 EERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMT 320 (636)
T ss_pred hhhcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEE
Confidence 999999999999999999999999999999988886 56665 77888999999999999999999999999999
Q ss_pred ECCeEEEEEeecccCCccceeEEEEeccccceeecccCCCCCCCCCCCCCchhhhCCCCCCCCCeeEEEEEecCcCcHHH
Q 008578 314 VDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKR 393 (561)
Q Consensus 314 VnG~h~~sF~yR~~lep~~v~~l~v~Gdv~l~sI~~~gLP~s~d~~~~~~~~~l~~p~~~~~~~~~LlIlV~Sap~n~er 393 (561)
|||+|+++|+||++++||.|++|+|+|||+|+||.+.|+|++++++++++++.+++||++++++++|||+|+|+|+||+|
T Consensus 321 VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~r 400 (636)
T PLN03133 321 VDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKR 400 (636)
T ss_pred ECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999878899999999999999999
Q ss_pred HHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEE
Q 008578 394 RMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVM 473 (561)
Q Consensus 394 R~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvl 473 (561)
|+|||+|||+....++..++++|++|.+.+..++..|++|+++||||||+||+|+|+|||+||+++++|+.+|++++|+|
T Consensus 401 R~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFil 480 (636)
T PLN03133 401 RMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVM 480 (636)
T ss_pred HHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEE
Confidence 99999999998777777899999999999988999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCcccceeecCHHHHHHHHHHh
Q 008578 474 KTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRY 553 (561)
Q Consensus 474 KvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc~G~gYVlS~dva~~I~~~~ 553 (561)
|+|||+|||+++|+++|+.....+.+|+|++..++.|+|++.+|||||+++||++.|||||+|+|||||+|+|++|+.++
T Consensus 481 K~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s 560 (636)
T PLN03133 481 KTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRH 560 (636)
T ss_pred EcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhh
Confidence 99999999999999999886667789999999999999999999999999999999999999999999999999999988
Q ss_pred cccccc
Q 008578 554 KEGRLK 559 (561)
Q Consensus 554 ~~~~L~ 559 (561)
+...++
T Consensus 561 ~s~~l~ 566 (636)
T PLN03133 561 KEGRLK 566 (636)
T ss_pred hhcccC
Confidence 654544
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-51 Score=429.70 Aligned_cols=271 Identities=37% Similarity=0.559 Sum_probs=241.0
Q ss_pred CccCCCCCCCCeEEEEEEEcCceEEEEECCeEEEEEeecccCCccceeEEEEeccccceeecccCCCCCCCCCCCCCchh
Q 008578 287 TKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRETLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEA 366 (561)
Q Consensus 287 ~~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~~sF~yR~~lep~~v~~l~v~Gdv~l~sI~~~gLP~s~d~~~~~~~~~ 366 (561)
..+.+|+..+..|+.++.++.+++++.+++++..+|.++...+.+..++...++.+..+.......+.+....+. ....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (349)
T KOG2287|consen 4 KEFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQK-FFYL 82 (349)
T ss_pred ccccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhcc-Chhh
Confidence 356799999999999999999999999999999999999987778889989888886666655555554443221 2233
Q ss_pred hhCCCCCCCCC-eeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCCh-hhhhhhhhhhccCCCEEEec
Q 008578 367 LRSYPLSLHKP-VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQ-IVNGELWNEARTYGDIQLMP 444 (561)
Q Consensus 367 l~~p~~~~~~~-~~LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~-~~~~~L~~Ea~~ygDIv~~d 444 (561)
+..|+.++... ++|+|+|.|+++||+||++||+|||++..+++++++++|++|.+.+. .++.+|++|++.|||||++|
T Consensus 83 l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~d 162 (349)
T KOG2287|consen 83 LYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVD 162 (349)
T ss_pred hcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEe
Confidence 45566654443 89999999999999999999999999998899999999999999865 56889999999999999999
Q ss_pred ccccCCCchhHHHHHHhhc-ccCCCccEEEEeCCccccchHHHHHHHhhc-CCCCceEEEEecCCCCCcCCCCCCeeecC
Q 008578 445 FVDYYNLITWKTLAICIFG-TDVVSAKFVMKTDDDAFVRVDEVLTSLKRI-NVHSGLLYGLINSESRPHRNPESKWYISL 522 (561)
Q Consensus 445 f~DsY~nLtlKtla~l~~~-~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~-~~~~~l~~G~v~~~~~P~R~~~sKwyVs~ 522 (561)
|.|+|+|+|+||++++.|+ .+|++++|+||+|||+||++++|+.+|++. ++...+|+|.+..+..|+|++.+|||||+
T Consensus 163 f~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~ 242 (349)
T KOG2287|consen 163 FEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE 242 (349)
T ss_pred cccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH
Confidence 9999999999999999997 569999999999999999999999999998 78889999999999999999999999999
Q ss_pred CCCCCCCCCCCcccceeecCHHHHHHHHHHhccccc
Q 008578 523 EEWPEETYPPWAHGPGYVVSHDIGKAVYKRYKEGRL 558 (561)
Q Consensus 523 e~yp~~~YPpYc~G~gYVlS~dva~~I~~~~~~~~L 558 (561)
++||++.|||||+|+|||+|+++|++|++++.+.++
T Consensus 243 ~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~ 278 (349)
T KOG2287|consen 243 SEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKF 278 (349)
T ss_pred HHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999998877654
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-44 Score=380.48 Aligned_cols=211 Identities=26% Similarity=0.335 Sum_probs=183.2
Q ss_pred cCCccceeEEEEeccccceeecccCCCCCCCCCCCCCchhhhCCCCCCCCCeeEEEEEecCcCcHHHHHHHHHHhccccc
Q 008578 327 TLEPWLVNEVRISGDLKLISVLASGLPTSEDSEHTTDLEALRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTE 406 (561)
Q Consensus 327 ~lep~~v~~l~v~Gdv~l~sI~~~gLP~s~d~~~~~~~~~l~~p~~~~~~~~~LlIlV~Sap~n~erR~aIR~TW~~~~~ 406 (561)
.||+|++++.. +.++.++|+|.++++... +.+.+++++|+|+|.|+++|++||++||+|||+...
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~ 167 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKKT---------QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGE 167 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCcccccccc---------CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence 56778887776 566778899998886441 344477899999999999999999999999998643
Q ss_pred cC-----CCeEEEEEEecccC--ChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCcc
Q 008578 407 VR-----SGTVAVRFFVGLHK--NQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDA 479 (561)
Q Consensus 407 ~~-----~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDt 479 (561)
.. ...++++||+|.+. +..++.+|++|+++|||||++||+|+|+|||+||+++++|+.++++++|+||+|||+
T Consensus 168 ~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDv 247 (408)
T PLN03193 168 KRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDV 247 (408)
T ss_pred cccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 22 36799999999987 567889999999999999999999999999999999999999989999999999999
Q ss_pred ccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCC----CCCCCCCCcccceeecCHHHHHHHHHHhc
Q 008578 480 FVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEW----PEETYPPWAHGPGYVVSHDIGKAVYKRYK 554 (561)
Q Consensus 480 fVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~y----p~~~YPpYc~G~gYVlS~dva~~I~~~~~ 554 (561)
|||+++|+.+|.......++|+|++.. .|+|++.++||++++.| +.+.|||||.|+|||||+|+|+.|+.+..
T Consensus 248 fVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~ 324 (408)
T PLN03193 248 HVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQH 324 (408)
T ss_pred eEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChh
Confidence 999999999998765556799999865 48898888888888888 56999999999999999999999985443
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=3.4e-41 Score=326.53 Aligned_cols=167 Identities=38% Similarity=0.639 Sum_probs=155.6
Q ss_pred HHHHHHHHHhccccccCCCeEEEEEEecccC--ChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhc-ccCCC
Q 008578 392 KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHK--NQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG-TDVVS 468 (561)
Q Consensus 392 erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~-~~c~~ 468 (561)
+||++||+|||+.......+++++|++|.+. +..++..|++|+++||||||+||.|+|+|+|+||+++++|+ .+|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877789999999999998 67788889999999999999999999999999999999997 56778
Q ss_pred ccEEEEeCCccccchHHHHHHHhhc--CCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCcccceeecCHHHH
Q 008578 469 AKFVMKTDDDAFVRVDEVLTSLKRI--NVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIG 546 (561)
Q Consensus 469 a~yvlKvDDDtfVnvd~L~~~L~~~--~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc~G~gYVlS~dva 546 (561)
++|++|+|||+|||+++|.++|... ......++|.+....+|.|++.+|||+++++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999986 45677899999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 008578 547 KAVYKRYKEGRL 558 (561)
Q Consensus 547 ~~I~~~~~~~~L 558 (561)
+.|++++...++
T Consensus 161 ~~i~~~~~~~~~ 172 (195)
T PF01762_consen 161 KRIYKASSHTPF 172 (195)
T ss_pred HHHHHHhhcCCC
Confidence 999999887653
No 5
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.98 E-value=9.6e-32 Score=245.17 Aligned_cols=127 Identities=37% Similarity=0.519 Sum_probs=119.1
Q ss_pred eeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeeEEEeeEeCCCCCCCCCEEEEcCcccCCcccccee
Q 008578 164 FKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVR 243 (561)
Q Consensus 164 ~~~~lP~GL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpR~~~~~~~~~pvIV~Ns~~~~~~Wg~EeR 243 (561)
|+..||+||.+|++|+|.|+|..++++|.|||+++ .++|+|||||||.++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999996 268999999999976 999999998 89999999
Q ss_pred cCCCCCCcccccchhhhhhcccCCCCCCCCccccccccCCCCCCccCCCCCCCCeEEEEEEEcCceEEEEECCeEEEEEe
Q 008578 244 CPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFA 323 (561)
Q Consensus 244 ~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~~sF~ 323 (561)
+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|+
T Consensus 68 ~--------------------------------------------~~~Pf~~g~~F~l~i~~~~~~f~i~vng~~~~~f~ 103 (128)
T smart00276 68 E--------------------------------------------GGFPFQPGQPFDLTIIVQPDHFQIFVNGVHITTFP 103 (128)
T ss_pred c--------------------------------------------CCCCCCCCCEEEEEEEEcCCEEEEEECCEeEEEec
Confidence 7 57999999999999999999999999999999999
Q ss_pred ecccCCccceeEEEEeccccceeecc
Q 008578 324 YRETLEPWLVNEVRISGDLKLISVLA 349 (561)
Q Consensus 324 yR~~lep~~v~~l~v~Gdv~l~sI~~ 349 (561)
||.++ ..|+.|.|.||++|++|.+
T Consensus 104 ~R~~~--~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 104 HRLPL--ESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred CCCCc--ccEeEEEEeCCEEEEEEEE
Confidence 99865 5999999999999999875
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=3.7e-32 Score=283.08 Aligned_cols=164 Identities=24% Similarity=0.331 Sum_probs=149.4
Q ss_pred CCCeeEEEEEecCcCc--HHHHHHHHHHhccccccC------CCeEEEEEEecccCCh--hhhhhhhhhhccCCCEEEec
Q 008578 375 HKPVDLFIGVFSTANN--FKRRMAVRRTWMQYTEVR------SGTVAVRFFVGLHKNQ--IVNGELWNEARTYGDIQLMP 444 (561)
Q Consensus 375 ~~~~~LlIlV~Sap~n--~erR~aIR~TW~~~~~~~------~~~v~v~FvvG~~~~~--~~~~~L~~Ea~~ygDIv~~d 444 (561)
..+..++++|.|..++ +.||++.|+||+++..+. .+.+.++|++|.+++. +.+++|++|+++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 6788899999999988 999999999999998776 7889999999999988 89999999999999999999
Q ss_pred c------------------cccCCCchhHHHHHHhhcc-cCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEec
Q 008578 445 F------------------VDYYNLITWKTLAICIFGT-DVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLIN 505 (561)
Q Consensus 445 f------------------~DsY~nLtlKtla~l~~~~-~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~ 505 (561)
| .|+|.++|+||+++++|+. .|++++|+||+|||+|||++++++.|+. .+.+.+|+|.+.
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~ 235 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYN 235 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeC
Confidence 9 7777889999999999975 4789999999999999999999999977 456679999999
Q ss_pred CCCCCcCCCCCCeeecCCCCCCCCCCCCcccceeecCHHHHHHHHHHhc
Q 008578 506 SESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKRYK 554 (561)
Q Consensus 506 ~~~~P~R~~~sKwyVs~e~yp~~~YPpYc~G~gYVlS~dva~~I~~~~~ 554 (561)
....|.|++ +||||+|+||+||+|+|+.|++...
T Consensus 236 ~~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~p 269 (382)
T PTZ00210 236 YYNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKP 269 (382)
T ss_pred CCCccccCC---------------CCCccccceeeccHHHHHHHHhhCh
Confidence 888888863 4999999999999999999998643
No 7
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=2e-31 Score=243.44 Aligned_cols=132 Identities=38% Similarity=0.614 Sum_probs=121.5
Q ss_pred ceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeeEEEeeEeCC-CCCCCCCEEEEcCcccCCccccc
Q 008578 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLG-DKITENPVIVQNTWTLAHDWGEE 241 (561)
Q Consensus 163 p~~~~lP~GL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpR~~~-~~~~~~pvIV~Ns~~~~~~Wg~E 241 (561)
||++.||+||.+|+.|+|.|++..++++|.|||+++. .++.++++|||||||.+ . +||+||+.+ |.||.|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~------~iv~Ns~~~-g~Wg~E 71 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQN------VIVRNSRIN-GKWGQE 71 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTEE------EEEEEEEET-TEE-SE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCCc------eEEEeceEC-CEeccc
Confidence 8999999999999999999999999999999999975 33578999999999999 5 999999999 899999
Q ss_pred eecCCCCCCcccccchhhhhhcccCCCCCCCCccccccccCCCCCCccCCCCCCCCeEEEEEEEcCceEEEEECCeEEEE
Q 008578 242 VRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITS 321 (561)
Q Consensus 242 eR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~~s 321 (561)
||+ ..|||.+|++|+|+|.+..++|+|+|||+|+++
T Consensus 72 e~~--------------------------------------------~~~pf~~g~~F~i~I~~~~~~f~I~vng~~~~~ 107 (133)
T PF00337_consen 72 ERE--------------------------------------------SPFPFQPGQPFEIRIRVEEDGFKIYVNGKHFCS 107 (133)
T ss_dssp EEE--------------------------------------------SSTSSTTTSEEEEEEEEESSEEEEEETTEEEEE
T ss_pred eee--------------------------------------------eeeeecCCceEEEEEEEecCeeEEEECCeEEEE
Confidence 995 589999999999999999999999999999999
Q ss_pred EeecccCCccceeEEEEeccccceeecc
Q 008578 322 FAYRETLEPWLVNEVRISGDLKLISVLA 349 (561)
Q Consensus 322 F~yR~~lep~~v~~l~v~Gdv~l~sI~~ 349 (561)
|+||.++ +.|+.|.|.||++|++|.+
T Consensus 108 F~~R~~~--~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 108 FPHRLPL--SSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EE-SSCG--GGEEEEEEEESEEEEEEEE
T ss_pred eeCcCCH--HHcCEEEEECCEEEEEEEC
Confidence 9999765 6999999999999999874
No 8
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=5.3e-31 Score=239.71 Aligned_cols=127 Identities=37% Similarity=0.560 Sum_probs=119.5
Q ss_pred ceeeeeCCCCCCCCEEEEEEEeCCCCCceEEEcCCCCCCCCCCCCeeEEEeeEeCCCCCCCCCEEEEcCcccCCccccce
Q 008578 163 SFKLQVPCGLTQGSSITIIGIPNGLLGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEV 242 (561)
Q Consensus 163 p~~~~lP~GL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpR~~~~~~~~~pvIV~Ns~~~~~~Wg~Ee 242 (561)
||...||++|.+|++|+|.|++..++++|.|||+++. .+|+|||||||.++ +||+||+.+ |.||.||
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~~------~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Ee 67 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGS------SDIALHFNPRFDEN------VIVRNSFLN-GNWGPEE 67 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCCEEEEEEecCC------CCEEEEEeeeCCCC------EEEEcCCCC-CEecHhh
Confidence 6888999999999999999999999999999999962 38999999999986 999999999 8999999
Q ss_pred ecCCCCCCcccccchhhhhhcccCCCCCCCCccccccccCCCCCCccCCCCCCCCeEEEEEEEcCceEEEEECCeEEEEE
Q 008578 243 RCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSF 322 (561)
Q Consensus 243 R~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~~sF 322 (561)
|+ ..|||.+|++|+|+|.++.++|+|+|||+|+++|
T Consensus 68 r~--------------------------------------------~~~pf~~g~~F~l~i~~~~~~f~i~vng~~~~~F 103 (127)
T cd00070 68 RS--------------------------------------------GGFPFQPGQPFELTILVEEDKFQIFVNGQHFFSF 103 (127)
T ss_pred cc--------------------------------------------CCCCCCCCCeEEEEEEEcCCEEEEEECCEeEEEe
Confidence 97 5799999999999999999999999999999999
Q ss_pred eecccCCccceeEEEEeccccceeec
Q 008578 323 AYRETLEPWLVNEVRISGDLKLISVL 348 (561)
Q Consensus 323 ~yR~~lep~~v~~l~v~Gdv~l~sI~ 348 (561)
+||.++ ++|+.|.|.||+.+++|.
T Consensus 104 ~~R~~~--~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 104 PHRLPL--ESIDYLSINGDVSLTSVE 127 (127)
T ss_pred cCcCCh--hhEEEEEEeCCEEEEEeC
Confidence 999765 799999999999999873
No 9
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.7e-30 Score=252.20 Aligned_cols=185 Identities=29% Similarity=0.414 Sum_probs=159.9
Q ss_pred CCCeeEEEEEecCcCcHHHHHHHHHHhcccc-----ccCCCeEEEEEEecc-cCChhhhhhhhhhhccCCCEEEec-ccc
Q 008578 375 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYT-----EVRSGTVAVRFFVGL-HKNQIVNGELWNEARTYGDIQLMP-FVD 447 (561)
Q Consensus 375 ~~~~~LlIlV~Sap~n~erR~aIR~TW~~~~-----~~~~~~v~v~FvvG~-~~~~~~~~~L~~Ea~~ygDIv~~d-f~D 447 (561)
+++++++|+|.|++++.+||+++|+|||... ......+.+||++|. ........+|++|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 5689999999999999999999999999862 233678999999999 556778899999999999999999 999
Q ss_pred cCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCC
Q 008578 448 YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPE 527 (561)
Q Consensus 448 sY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~ 527 (561)
.|.+|+.||++++.+|....+++|++|+|||+|||++.|...|.+......+|+|++..+ +++-.+.+|||=|+ -+.+
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999777788999998765 45556789999876 3335
Q ss_pred CC--CCCCcccceeecCHHHHHHHHH------HhcccccccC
Q 008578 528 ET--YPPWAHGPGYVVSHDIGKAVYK------RYKEGRLKVG 561 (561)
Q Consensus 528 ~~--YPpYc~G~gYVlS~dva~~I~~------~~~~~~L~~g 561 (561)
+. |-||+.|++|+||+|++..|.- .+.+.++++|
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlG 207 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLG 207 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccc
Confidence 55 9999999999999999998854 4444455544
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=1.7e-26 Score=214.94 Aligned_cols=137 Identities=30% Similarity=0.417 Sum_probs=124.9
Q ss_pred CCceeeeeCCCCCCCCEEEEEEEeCCC-CCceEEEcCCCCCCCCCCCCeeEEEeeEeCCCCCCCCCEEEEcCcccCCccc
Q 008578 161 RSSFKLQVPCGLTQGSSITIIGIPNGL-LGNFRIDLTGEPLPGEPDPPIVLHYNVRLLGDKITENPVIVQNTWTLAHDWG 239 (561)
Q Consensus 161 ~~p~~~~lP~GL~~Gs~ItV~G~p~~~-~~~F~I~L~~~~~~~~~~~~i~LHfNpR~~~~~~~~~pvIV~Ns~~~~~~Wg 239 (561)
.+|+...++++|.+|+.+++.|.+..+ ..+|.++++.+-.... +.+|+|||||||+++ .|||||+.+ |.||
T Consensus 3 ~~p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg 74 (143)
T KOG3587|consen 3 GVPFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWG 74 (143)
T ss_pred CcccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccC
Confidence 478888899999999999999999976 6789999998755554 677999999999998 699999988 9999
Q ss_pred cceecCCCCCCcccccchhhhhhcccCCCCCCCCccccccccCCCCCCccCCCCCCCCeEEEEEEEcCceEEEEECCeEE
Q 008578 240 EEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSKTKRFFPFKQGHLFVATIRVGSEGIQTTVDGKHI 319 (561)
Q Consensus 240 ~EeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~ 319 (561)
.|||. ..+||+.|++|.|+|.++.+.|+|.|||.|+
T Consensus 75 ~eE~~--------------------------------------------~~~PF~~g~~F~l~I~~~~~~~~I~VNg~~f 110 (143)
T KOG3587|consen 75 LEERE--------------------------------------------GGNPFQPGQPFDLTILVEEDKFQIFVNGVHF 110 (143)
T ss_pred chhhc--------------------------------------------CCCCCCCCCeEEEEEEEccCeEEEEECCEEE
Confidence 99996 6899999999999999999999999999999
Q ss_pred EEEeecccCCccceeEEEEeccccceeecccC
Q 008578 320 TSFAYRETLEPWLVNEVRISGDLKLISVLASG 351 (561)
Q Consensus 320 ~sF~yR~~lep~~v~~l~v~Gdv~l~sI~~~g 351 (561)
++|.||.+. ..+..|.|.||++|.+|.+.+
T Consensus 111 ~~y~HR~p~--~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 111 ADYPHRIPP--SSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EeecCCCCC--hheeEEEEeeeEEEEEEEEEc
Confidence 999999755 599999999999999998874
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.45 E-value=9e-14 Score=140.98 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=83.2
Q ss_pred eeEEEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHH
Q 008578 378 VDLFIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (561)
Q Consensus 378 ~~LlIlV~Sap~n~erR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKt 456 (561)
-+++|+|+|++.+.+.| .+|++||++... ...|+.....+..+... ...+++.-+....+...+++.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l~~~------~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSLPTV------TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHHHHH------HGGGEEE-------------H
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCccccccccc------cccccccCCCcchhhHHHHHH
Confidence 46899999999877666 799999998543 12354333333333322 233455555555555445555
Q ss_pred HHHHhhcc-cCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCc-
Q 008578 457 LAICIFGT-DVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWA- 534 (561)
Q Consensus 457 la~l~~~~-~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc- 534 (561)
++...+.. ...+.+|++++|||+||++++|..+|...++.++.|+|...... |..... +. .........| .||
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~-~~--~~~~~~~~~~-~f~~ 148 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIH-RF--NPNKSKDSGF-WFAT 148 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE---------------------------EE-
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeec-cc--cccccCcCce-EeeC
Confidence 54444432 23578999999999999999999999999999999999875432 222100 00 0000011112 233
Q ss_pred ccceeecCHHHHHHHHHHhcc
Q 008578 535 HGPGYVVSHDIGKAVYKRYKE 555 (561)
Q Consensus 535 ~G~gYVlS~dva~~I~~~~~~ 555 (561)
+|+||+||+.++++|......
T Consensus 149 GGaG~vlSr~~~~k~~~~~~~ 169 (252)
T PF02434_consen 149 GGAGYVLSRALLKKMSPWASG 169 (252)
T ss_dssp GGG-EEEEHHHHHHHHHHHTT
T ss_pred CCeeHHHhHHHHHHHhhhccc
Confidence 679999999999999654443
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.00 E-value=8.3e-10 Score=117.55 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=110.1
Q ss_pred CCCeeEEEEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCch
Q 008578 375 HKPVDLFIGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLIT 453 (561)
Q Consensus 375 ~~~~~LlIlV~Sap~n~erR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLt 453 (561)
..+..+++.|++++.+...| .++-+||++... +..|+--. +-++-..+. .|..+..|+|+++.
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~---------~s~~~~~f~-~v~~~~~~g~~~~~ 151 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPT---------LSKDDSRFP-TVYYNLPDGYRSLW 151 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCcc---------CCCCCCcCc-eeeccCCcchHHHH
Confidence 56799999999998777766 599999998542 33344310 111112222 24678899999999
Q ss_pred hHHHHHHhhcc-c-CCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCC
Q 008578 454 WKTLAICIFGT-D-VVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYP 531 (561)
Q Consensus 454 lKtla~l~~~~-~-c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YP 531 (561)
.||..++++.. + -.+++|++|+|||||+.++||..+|.+.+++++.|+|+... +.-. .+ |.+
T Consensus 152 ~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~---~~~~-~~--y~~---------- 215 (364)
T KOG2246|consen 152 RKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK---SYFQ-NG--YSS---------- 215 (364)
T ss_pred HHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc---cccc-cc--ccc----------
Confidence 99999999874 3 35899999999999999999999999999999999998532 1111 12 322
Q ss_pred CCcccceeecCHHHHHHHHHHhccc
Q 008578 532 PWAHGPGYVVSHDIGKAVYKRYKEG 556 (561)
Q Consensus 532 pYc~G~gYVlS~dva~~I~~~~~~~ 556 (561)
+|+||++|+.+.+.+++...+.
T Consensus 216 ---g~ag~~ls~aa~~~la~~l~~~ 237 (364)
T KOG2246|consen 216 ---GGAGYVLSFAALRRLAERLLNN 237 (364)
T ss_pred ---CCCCcceeHHHHHHHHHHHhcc
Confidence 8999999999999988766543
No 13
>PLN03153 hypothetical protein; Provisional
Probab=98.23 E-value=9.8e-06 Score=89.06 Aligned_cols=150 Identities=14% Similarity=0.175 Sum_probs=88.1
Q ss_pred CCeeEEEEEecCcCcH-HHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccc---cCCC
Q 008578 376 KPVDLFIGVFSTANNF-KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVD---YYNL 451 (561)
Q Consensus 376 ~~~~LlIlV~Sap~n~-erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~D---sY~n 451 (561)
.--.++++|.++.+.. +|+..|+.+|..... + ..+|+.....+......+ =- +.+.-.- .|.|
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-r----g~v~ld~~~~~~~~~~~~-------P~-i~is~d~s~f~y~~ 186 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-R----GHVWLEEQVSPEEGDDSL-------PP-IMVSEDTSRFRYTN 186 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccc-e----eEEEecccCCCCCCcCCC-------CC-EEeCCCcccccccC
Confidence 3456788898888766 455788888886321 1 234554433221000000 00 1111000 1333
Q ss_pred c----hhHHH-HHH--hhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCC
Q 008578 452 I----TWKTL-AIC--IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEE 524 (561)
Q Consensus 452 L----tlKtl-a~l--~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~ 524 (561)
- ...-+ .+. .+....++++|++++|||||+.+++|+..|...++.++.|+|......... ..+.
T Consensus 187 ~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn----~~f~----- 257 (537)
T PLN03153 187 PTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN----SYFS----- 257 (537)
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc----cccc-----
Confidence 1 11111 112 222346899999999999999999999999999999999999865332110 0000
Q ss_pred CCCCCCCCCcccceeecCHHHHHHHHHH
Q 008578 525 WPEETYPPWAHGPGYVVSHDIGKAVYKR 552 (561)
Q Consensus 525 yp~~~YPpYc~G~gYVlS~dva~~I~~~ 552 (561)
|--.-+|+||+||+.+++.|.+.
T Consensus 258 -----~~fA~GGAG~~LSrPLae~L~~~ 280 (537)
T PLN03153 258 -----HNMAFGGGGIAISYPLAEALSRI 280 (537)
T ss_pred -----cccccCCceEEEcHHHHHHHHHH
Confidence 11123899999999999888765
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.13 Score=56.84 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=86.4
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHH
Q 008578 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (561)
Q Consensus 377 ~~~LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKt 456 (561)
.=+|++.|++. ..---+|-+|-+..- -++.||.+...-. .|.-++..+-.|+.-.-|+
T Consensus 25 RErl~~aVmte---~tlA~a~NrT~ahhv------prv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 25 RERLMAAVMTE---STLALAINRTLAHHV------PRVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhc------ceeEEeecccccc-------------ccHhhccccCccccCcccc
Confidence 34566777772 155567777777632 2566777765421 1222333444555555566
Q ss_pred HH-HHhhcc--cCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCC
Q 008578 457 LA-ICIFGT--DVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPW 533 (561)
Q Consensus 457 la-~l~~~~--~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpY 533 (561)
.. .+.+.. ..-+++|++-+-|||||+...|+.++...+...++|+|.-.- +- ...
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------~g------------s~r---- 140 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------DG------------SGR---- 140 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------Cc------------cCc----
Confidence 44 334432 334899999999999999999999999988899999993111 10 111
Q ss_pred c-ccceeecCHHHHHHHHH
Q 008578 534 A-HGPGYVVSHDIGKAVYK 551 (561)
Q Consensus 534 c-~G~gYVlS~dva~~I~~ 551 (561)
| .|.||++|+.++..+-.
T Consensus 141 C~l~~G~LLS~s~l~~lrn 159 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRN 159 (681)
T ss_pred cccccceeecHHHHHHHHh
Confidence 5 58999999999998854
No 15
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.88 E-value=0.99 Score=43.52 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=49.7
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchh-------
Q 008578 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITW------- 454 (561)
Q Consensus 382 IlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtl------- 454 (561)
|.|.|-+...+||+.+.+..... .+.+.||-|-.+......++..+ |..-.... ..-+.++.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~--~~~~~lt~gEiGC~l 72 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFRR---YDPELFKK--RYGRPLTPGEIGCAL 72 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHHH---hhhhhhhc--cccccCCcceEeehh
Confidence 56777888999999998887753 34667777776543222111111 11111000 00111222
Q ss_pred HHHHHHhhcccCCCccEEEEeCCccccchH
Q 008578 455 KTLAICIFGTDVVSAKFVMKTDDDAFVRVD 484 (561)
Q Consensus 455 Ktla~l~~~~~c~~a~yvlKvDDDtfVnvd 484 (561)
-.+.+++-... .+.+|++-..||++++.+
T Consensus 73 SH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 73 SHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred hHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 22333322222 267899999999999865
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=90.15 E-value=1.7 Score=38.65 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=77.1
Q ss_pred EEEecCcCcHHHH-HHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHH
Q 008578 382 IGVFSTANNFKRR-MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAIC 460 (561)
Q Consensus 382 IlV~Sap~n~erR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l 460 (561)
|.+.-.+....+- ..+++. . ...+.+.++-..+ +......+++-.+....+..+...+.. . .-..+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g----~~~~~ 70 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-G----FSAAR 70 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-H----HHHHH
T ss_pred EEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-c----ccccc
Confidence 3333344444444 356666 1 2345555555444 344445555554445566665555433 1 22233
Q ss_pred hhcccCCCccEEEEeCCccccchHHHHHHHhhcCC-CCceEEEEecCCCCCc---CCCCC--Cee-ec--CCCCCCCCCC
Q 008578 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPH---RNPES--KWY-IS--LEEWPEETYP 531 (561)
Q Consensus 461 ~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~-~~~l~~G~v~~~~~P~---R~~~s--Kwy-Vs--~e~yp~~~YP 531 (561)
..+......+|++.+|||.++..+.|..++..... ....++|......... ..... .+. .. ........--
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKI 150 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTS
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCc
Confidence 33444446669999999999998866666665443 3345555543211111 11011 000 00 0111123334
Q ss_pred CCcccceeecCHHHHHHH
Q 008578 532 PWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 532 pYc~G~gYVlS~dva~~I 549 (561)
.++.|++.++++++.+++
T Consensus 151 ~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 151 SFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SEESSSCEEEEEHHHHHC
T ss_pred ccccccEEEEEHHHHHhh
Confidence 677899999999998764
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.76 E-value=2.5 Score=37.43 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=49.0
Q ss_pred hhcccCCCccEEEEeCCccccchHHHHHHHhhcCC--CCceEEEEecCCCC---CcCCCC-CCe---eecCCCC-CCCCC
Q 008578 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV--HSGLLYGLINSESR---PHRNPE-SKW---YISLEEW-PEETY 530 (561)
Q Consensus 461 ~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~--~~~l~~G~v~~~~~---P~R~~~-sKw---yVs~e~y-p~~~Y 530 (561)
.++....+.+|++.+|+|.++..+.|..++..... .-..+.|....... ...... .++ +.....+ ....+
T Consensus 71 n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
T cd06423 71 NAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGG 150 (180)
T ss_pred HHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecc
Confidence 33444448999999999999988777776444322 22234444322111 111000 011 1000000 12334
Q ss_pred CCCcccceeecCHHHHHHHH
Q 008578 531 PPWAHGPGYVVSHDIGKAVY 550 (561)
Q Consensus 531 PpYc~G~gYVlS~dva~~I~ 550 (561)
...+.|.++++++++++.+-
T Consensus 151 ~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 151 VLVLSGAFGAFRREALREVG 170 (180)
T ss_pred eeecCchHHHHHHHHHHHhC
Confidence 56789999999999988753
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=89.21 E-value=2.5 Score=40.84 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred EEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCE--EEecccccCCCc--hhH
Q 008578 380 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDI--QLMPFVDYYNLI--TWK 455 (561)
Q Consensus 380 LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI--v~~df~DsY~nL--tlK 455 (561)
+.|+|.+--..-.-++.|+.--.+. ..++.++++...+. ....+.+++-.+.|... ..+... .|. ..|
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~----~~~~~v~vvd~~~~-~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k 74 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD----YPRLEVVVVDDGSD-DETAEILRALAARYPRVRVRVIRRP---RNPGPGGK 74 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH----HHTEEEEEEEE-SS-S-GCTTHHHHHHTTGG-GEEEEE-------HHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC----CCCeEEEEEECCCC-hHHHHHHHHHHHHcCCCceEEeecC---CCCCcchH
Confidence 5566665544445555666555442 13455655553333 33444455555556543 222221 222 234
Q ss_pred HHHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhc-CCCCceEEEEecCCCCC-c--C---CCCCCeeecCCCCC-C
Q 008578 456 TLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI-NVHSGLLYGLINSESRP-H--R---NPESKWYISLEEWP-E 527 (561)
Q Consensus 456 tla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~-~~~~~l~~G~v~~~~~P-~--R---~~~sKwyVs~e~yp-~ 527 (561)
.-+ +.++....+.+|++.+|||+.+..+-|...+... .+.-..+.|........ . + .....|+.. .++ .
T Consensus 75 ~~a-~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 151 (228)
T PF13641_consen 75 ARA-LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR--FRSGR 151 (228)
T ss_dssp HHH-HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT--S-TT-
T ss_pred HHH-HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh--hhhhh
Confidence 433 3444333469999999999999998888877765 34444555554322100 0 0 000011110 111 1
Q ss_pred CCCC-CCcccceeecCHHHHHHH
Q 008578 528 ETYP-PWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 528 ~~YP-pYc~G~gYVlS~dva~~I 549 (561)
..+. .++.|++.++.+++++.+
T Consensus 152 ~~~~~~~~~G~~~~~rr~~~~~~ 174 (228)
T PF13641_consen 152 RALGVAFLSGSGMLFRRSALEEV 174 (228)
T ss_dssp B----S-B--TEEEEEHHHHHHH
T ss_pred cccceeeccCcEEEEEHHHHHHh
Confidence 1122 446899999999999887
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=88.45 E-value=1.7 Score=39.43 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=68.1
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHH----
Q 008578 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTL---- 457 (561)
Q Consensus 382 IlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtl---- 457 (561)
|.|.+-+..-+||..+++..... .+.+.||-|-.........+...... .........++.--+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~------~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDA------LFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHH------HhhhhcCCCCChhhHHHHH
Confidence 45677888889999999866542 34567777776543333333222111 000011122222212
Q ss_pred ---HHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCc
Q 008578 458 ---AICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWA 534 (561)
Q Consensus 458 ---a~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc 534 (561)
.+++-... .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 22222111 266899999999999877
Q ss_pred ccceeecCHHHHHHHHHHhcc
Q 008578 535 HGPGYVVSHDIGKAVYKRYKE 555 (561)
Q Consensus 535 ~G~gYVlS~dva~~I~~~~~~ 555 (561)
...||++|+..|+++++.++.
T Consensus 99 ~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred CceEEEeCHHHHHHHHHhCCC
Confidence 667999999999999998775
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.35 E-value=2.4 Score=40.03 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=72.9
Q ss_pred HHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCC-CEEEecccccCCCchhHHHHHHhhcccCCCccEEE
Q 008578 395 MAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYG-DIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVM 473 (561)
Q Consensus 395 ~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~yg-DIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvl 473 (561)
..|.+++-+-.......+.++++-..+.+. +...+++-.+.|. .+.......... + ...+..+....+.+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G----~-~~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG----V-ARNFESLLQAADGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc----H-HHHHHHHHHhCCCCEEE
Confidence 345555543221112246666666555443 3333444444453 333333332221 1 12223334456899999
Q ss_pred EeCCccccchHHHHHHHhh-cCC-CCceEEEEecC---CCCCcCCCCCCeeec----CCCCCCCCCCCCcccceeecCHH
Q 008578 474 KTDDDAFVRVDEVLTSLKR-INV-HSGLLYGLINS---ESRPHRNPESKWYIS----LEEWPEETYPPWAHGPGYVVSHD 544 (561)
Q Consensus 474 KvDDDtfVnvd~L~~~L~~-~~~-~~~l~~G~v~~---~~~P~R~~~sKwyVs----~e~yp~~~YPpYc~G~gYVlS~d 544 (561)
..|+|.++..+.|..++.. ... ....+.|.... ....... ..+... ...+.......++.|+++++.++
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 162 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGE--SFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRE 162 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCccc--ccccccccCCccCHHHHHHhCccCCceeeEEHH
Confidence 9999999998888877775 222 23344443221 1111110 111000 00111122245668999999999
Q ss_pred HHHHHH
Q 008578 545 IGKAVY 550 (561)
Q Consensus 545 va~~I~ 550 (561)
+++.+.
T Consensus 163 ~~~~~~ 168 (214)
T cd04196 163 LLELAL 168 (214)
T ss_pred HHHhhc
Confidence 988764
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.32 E-value=10 Score=36.13 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred EEEEEEecccCChhhhhhhh-hhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHH
Q 008578 412 VAVRFFVGLHKNQIVNGELW-NEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 412 v~v~FvvG~~~~~~~~~~L~-~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
+.++.+-..+.+. ....++ .....+..+..+..... .+ .-|.. .+.++....+.+|++.+|+|..+..+.|...+
T Consensus 29 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~v~~~~~~~~-~~-~g~~~-a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 29 FEVILVDDHSTDG-TVQILEFAAAKPNFQLKILNNSRV-SI-SGKKN-ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred eEEEEEcCCCCcC-hHHHHHHHHhCCCcceEEeeccCc-cc-chhHH-HHHHHHHHhcCCEEEEECCCcccCHHHHHHHH
Confidence 5555555544432 233343 11222334555544431 22 23332 23444445578999999999999988888777
Q ss_pred hhcCC-CCceEEEEecCCCCCc----CCCCCCeeecC---CCCCCCCCCCCcccceeecCHHHHHHH
Q 008578 491 KRINV-HSGLLYGLINSESRPH----RNPESKWYISL---EEWPEETYPPWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 491 ~~~~~-~~~l~~G~v~~~~~P~----R~~~sKwyVs~---e~yp~~~YPpYc~G~gYVlS~dva~~I 549 (561)
..... ....+.|..... .+. +-..-.+.... .......+|..+.|.++++++++.+.+
T Consensus 105 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ 170 (229)
T cd04192 105 AFIQKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEV 170 (229)
T ss_pred HHhhcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHh
Confidence 74332 334555654322 110 00000000000 001223356677899999999998887
No 22
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.80 E-value=16 Score=32.54 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=23.5
Q ss_pred cCCCccEEEEeCCccccchHHHHHHHhh
Q 008578 465 DVVSAKFVMKTDDDAFVRVDEVLTSLKR 492 (561)
Q Consensus 465 ~c~~a~yvlKvDDDtfVnvd~L~~~L~~ 492 (561)
...+.+|++.+|||.++..+.+...++.
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHH
Confidence 3348999999999999999888877764
No 23
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.18 E-value=11 Score=34.82 Aligned_cols=90 Identities=8% Similarity=-0.062 Sum_probs=52.3
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhc--CCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCccc
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI--NVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHG 536 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~--~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc~G 536 (561)
.+..+....+.+|++.+|+|.++..+.+...+... .+...+++|........... ...+.........-....++.+
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPICH 144 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcccC
Confidence 34444444578999999999999988888877332 23345666764321111111 1111111111122233566788
Q ss_pred ceeecCHHHHHHH
Q 008578 537 PGYVVSHDIGKAV 549 (561)
Q Consensus 537 ~gYVlS~dva~~I 549 (561)
++.++++++.+.+
T Consensus 145 ~~~~~~~~~~~~~ 157 (202)
T cd06433 145 QATFFRRSLFEKY 157 (202)
T ss_pred cceEEEHHHHHHh
Confidence 8899999998877
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=82.90 E-value=21 Score=33.87 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=60.8
Q ss_pred EEEEEEecccCChhhhhhhhhhhccCC--CEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHH
Q 008578 412 VAVRFFVGLHKNQIVNGELWNEARTYG--DIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (561)
Q Consensus 412 v~v~FvvG~~~~~~~~~~L~~Ea~~yg--DIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~ 489 (561)
+.++++...+.+.. ...+++-.+.|. ++......... -...|.-+ +..+....+.+|++.+|+|+.+..+.|...
T Consensus 31 ~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 67777776665543 233444444444 33222211111 11234322 233444457899999999999988888777
Q ss_pred HhhcC-CCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCCCCCCcccceeecCHHHHHHH
Q 008578 490 LKRIN-VHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 490 L~~~~-~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~YPpYc~G~gYVlS~dva~~I 549 (561)
+.... +.-..+.|. ++.|++.++.+++.+.+
T Consensus 108 ~~~~~~~~~~~v~~~-----------------------------~~~g~~~~~r~~~~~~~ 139 (196)
T cd02520 108 VAPLMDPGVGLVTCL-----------------------------CAFGKSMALRREVLDAI 139 (196)
T ss_pred HHHhhCCCCCeEEee-----------------------------cccCceeeeEHHHHHhc
Confidence 76632 222233332 56788999999988765
No 25
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=82.12 E-value=3.3 Score=38.57 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=71.1
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
.+.++.+-..+.+.. ...++...+++..+..+.....+. |. .++..+..+...+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~t-~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRT-LEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccH-HHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 355555555554432 233444444555565555433222 22 233334334466999999999999888777777
Q ss_pred hhcCCCCceEEEEecCCCCCc-CCCCCCeeecCCCCCCCCCCCCcccceeecCHHHHHHHHH
Q 008578 491 KRINVHSGLLYGLINSESRPH-RNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 551 (561)
Q Consensus 491 ~~~~~~~~l~~G~v~~~~~P~-R~~~sKwyVs~e~yp~~~YPpYc~G~gYVlS~dva~~I~~ 551 (561)
+........++|.......+. +.-.++.+...........-+...|+++++++++++.+..
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 764444556777654322110 0000010000000101222345678889999999998753
No 26
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.15 E-value=2.8 Score=38.79 Aligned_cols=132 Identities=9% Similarity=0.025 Sum_probs=69.4
Q ss_pred EEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHHh
Q 008578 412 VAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLK 491 (561)
Q Consensus 412 v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~ 491 (561)
..+..+-..+.+ .....++.-.+++..+..+....... | -..+..+..+...+|++.+|+|..+..+.|..++.
T Consensus 29 ~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 29 YEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 444444433333 33444544455566655555444432 1 12333444444559999999999999888888887
Q ss_pred h-cCCCCceEEEEecCCCC----C-cCCCCCCeeecCC-CCCCCCCCCCcccceeecCHHHHHHHH
Q 008578 492 R-INVHSGLLYGLINSESR----P-HRNPESKWYISLE-EWPEETYPPWAHGPGYVVSHDIGKAVY 550 (561)
Q Consensus 492 ~-~~~~~~l~~G~v~~~~~----P-~R~~~sKwyVs~e-~yp~~~YPpYc~G~gYVlS~dva~~I~ 550 (561)
. .......++|....... + .+. ...+..... ..-...-.....|+.+++++++++.+-
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 103 KLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 5 34455667776433211 1 000 000000000 000111123456778899999999885
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=79.55 E-value=26 Score=37.45 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=80.2
Q ss_pred eeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCC--EEEecccccCCCchhH
Q 008578 378 VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGD--IQLMPFVDYYNLITWK 455 (561)
Q Consensus 378 ~~LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--Iv~~df~DsY~nLtlK 455 (561)
+.+-|+|...-+...-.+.++. ..+.. ...+.++|+...+.+... +.+++=.+.|.+ |..+. .+.-.....|
T Consensus 41 p~VSViiP~~nee~~l~~~L~S-l~~q~---Yp~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K 114 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLAS-FCRQD---YPGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVI-DARRHGPNRK 114 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHH-HHhcC---CCCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEE-CCCCCCCChH
Confidence 3444555544333333445543 32222 123667776665554322 233332345655 33331 1111222346
Q ss_pred HHHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCC-ceEEEEecCCCCCcCCCCCC---eeecCCCCCC----
Q 008578 456 TLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSESRPHRNPESK---WYISLEEWPE---- 527 (561)
Q Consensus 456 tla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~-~l~~G~v~~~~~P~R~~~sK---wyVs~e~yp~---- 527 (561)
.-++.+ +....+.+|++.+|+|+.+..+.|...+......+ ..+.|... ..+......+ .++....+|.
T Consensus 115 ~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 115 VSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMVA 191 (373)
T ss_pred HHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHHH
Confidence 655444 23445889999999999999999888777653222 23333211 1111110000 0111111110
Q ss_pred --CCCCCCcccceeecCHHHHHHH
Q 008578 528 --ETYPPWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 528 --~~YPpYc~G~gYVlS~dva~~I 549 (561)
..-+.+|.|.++++.+++.+.+
T Consensus 192 ~~~~~~~~~~G~~~a~RR~~l~~i 215 (373)
T TIGR03472 192 RALGRARFCFGATMALRRATLEAI 215 (373)
T ss_pred HhccCCccccChhhheeHHHHHHc
Confidence 0113568999999999998877
No 28
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.51 E-value=53 Score=30.67 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=47.7
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
.+.++.+-..+.+......++...+.+.-+.+... +. |.. .-.++..+....+.+|++..|+|..+..+.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~g--~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFR-EE--NGG--ISAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEc-cc--CCC--HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 35565665555554443333333333333333221 11 111 12234444445578999999999999998888777
Q ss_pred hhc--CCCCceEEEE
Q 008578 491 KRI--NVHSGLLYGL 503 (561)
Q Consensus 491 ~~~--~~~~~l~~G~ 503 (561)
+.. .+.-..++|.
T Consensus 106 ~~~~~~~~~~~v~~~ 120 (202)
T cd04184 106 KALNEHPDADLIYSD 120 (202)
T ss_pred HHHHhCCCCCEEEcc
Confidence 764 2333455554
No 29
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.08 E-value=25 Score=33.11 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=26.6
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhcC
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN 494 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~ 494 (561)
+++++. ..+.+|++..|||..+..+-|...+....
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 445555 45789999999999999887776666543
No 30
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=69.76 E-value=1.1e+02 Score=31.10 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhcC
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN 494 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~ 494 (561)
+...+......+|++.+|+|+.+..+-|..++....
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 445554445789999999999998877777766543
No 31
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=67.11 E-value=1.2e+02 Score=29.05 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=48.8
Q ss_pred CeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHH
Q 008578 410 GTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (561)
Q Consensus 410 ~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~ 489 (561)
..+.++.+-+.+.+ +....++...+.+..+....-.. .. +. .++..+....+.+|++.+|||..+..+-|...
T Consensus 30 ~~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~----~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~ 102 (249)
T cd02525 30 DLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPK----RI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILEL 102 (249)
T ss_pred CccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCC----CC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHH
Confidence 35566666555544 33444444444444444443221 11 11 23455544458899999999999998877777
Q ss_pred HhhcCCC-CceEEEEe
Q 008578 490 LKRINVH-SGLLYGLI 504 (561)
Q Consensus 490 L~~~~~~-~~l~~G~v 504 (561)
+...... ...+.|..
T Consensus 103 ~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 103 VEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHhcCCCCEEecce
Confidence 7553322 23344543
No 32
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=66.71 E-value=26 Score=33.88 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CccEEEEeCCccccchHHHHHHHhhcC
Q 008578 468 SAKFVMKTDDDAFVRVDEVLTSLKRIN 494 (561)
Q Consensus 468 ~a~yvlKvDDDtfVnvd~L~~~L~~~~ 494 (561)
+.+|++.+|+|+.+..+.|...+....
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 479999999999999999988887653
No 33
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=64.83 E-value=20 Score=37.31 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=64.9
Q ss_pred CeeEEEeeEeCCCCCCCCCEEEEcCcccCCccccceecCCCCCCcccccchhhhhhcccCCCCCCCCccccccccCCCCC
Q 008578 207 PIVLHYNVRLLGDKITENPVIVQNTWTLAHDWGEEVRCPSPSPEKIIKVDELDQCNKLVGNDDKRLPTVSTRLNNSRTSK 286 (561)
Q Consensus 207 ~i~LHfNpR~~~~~~~~~pvIV~Ns~~~~~~Wg~EeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (561)
-|.+.| |-|..-. .+.|--+-+...|.-|+-.+..++-....||=..+-+.-. -
T Consensus 74 GIP~~F-PQFG~~g-----~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~--------------------~ 127 (305)
T KOG1594|consen 74 GIPICF-PQFGNFG-----SLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDD--------------------L 127 (305)
T ss_pred CcceEe-eccCCCC-----cccccccccceeeEeccCCCCCCcCCceeEEEEecCChhh--------------------h
Confidence 466666 7776432 3444444333468888887776655556666554433111 1
Q ss_pred CccCCCCCCCCeEEEEEEEcCceEEEEE-----CCeEE-EEEeecccCCccceeEEEEecc
Q 008578 287 TKRFFPFKQGHLFVATIRVGSEGIQTTV-----DGKHI-TSFAYRETLEPWLVNEVRISGD 341 (561)
Q Consensus 287 ~~~~fPF~~G~~F~lti~~~~egf~v~V-----nG~h~-~sF~yR~~lep~~v~~l~v~Gd 341 (561)
..|++-| .|.+++..+.+..+.+. |++.+ .+|+|++=|.-.+|++++|+|=
T Consensus 128 kiWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL 184 (305)
T KOG1594|consen 128 KIWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGL 184 (305)
T ss_pred hhCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecc
Confidence 1355555 46677777765555543 77777 6899998777778888888883
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=62.89 E-value=46 Score=35.10 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=70.0
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCC-EEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGD-IQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD-Iv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~ 489 (561)
.+.++++-..+.|... +.+++-++.+++ ++.......+. |.- ++..+....+.+|++.+|+|.-.+++.+..+
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4677777777665432 333333344444 44333333322 221 2223333347899999999999999999888
Q ss_pred HhhcCCCCceEEEEecC-CCCCcCCCCCCeeecC-CCCCCCCCCCCcccceeecCHHHHHHHHH
Q 008578 490 LKRINVHSGLLYGLINS-ESRPHRNPESKWYISL-EEWPEETYPPWAHGPGYVVSHDIGKAVYK 551 (561)
Q Consensus 490 L~~~~~~~~l~~G~v~~-~~~P~R~~~sKwyVs~-e~yp~~~YPpYc~G~gYVlS~dva~~I~~ 551 (561)
++......+.+.|.... ...+.|.-.++.+-.- .......++.++.| .-++++++++.+..
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88754333455554322 1222232222211000 01112334444333 34899999998854
No 35
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=62.49 E-value=66 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=23.2
Q ss_pred hcccCCCccEEEEeCCccccchHHHHHHHh
Q 008578 462 FGTDVVSAKFVMKTDDDAFVRVDEVLTSLK 491 (561)
Q Consensus 462 ~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~ 491 (561)
.+....+.+|++.+|+|..+..+.+...+.
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHH
Confidence 333334799999999999999988877633
No 36
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=62.03 E-value=17 Score=34.93 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCccEEEEeCCccccchHHHHHHHhhcCCCC--ceEEEEecC-CCCC----cCCC--CCCeeecCCCCC-CCCCCCCccc
Q 008578 467 VSAKFVMKTDDDAFVRVDEVLTSLKRINVHS--GLLYGLINS-ESRP----HRNP--ESKWYISLEEWP-EETYPPWAHG 536 (561)
Q Consensus 467 ~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~--~l~~G~v~~-~~~P----~R~~--~sKwyVs~e~yp-~~~YPpYc~G 536 (561)
.+.+|++.+|+|+++..+.|..++....... ..+.|.... .... .+.. ....+....... ......++.|
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCG 162 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecC
Confidence 4789999999999999988888877654322 223333211 1100 0000 000010000000 0122566789
Q ss_pred ceeecCHHHHHHH
Q 008578 537 PGYVVSHDIGKAV 549 (561)
Q Consensus 537 ~gYVlS~dva~~I 549 (561)
++.++++++++.+
T Consensus 163 ~~~~~r~~~~~~i 175 (234)
T cd06421 163 SGAVVRREALDEI 175 (234)
T ss_pred ceeeEeHHHHHHh
Confidence 9999999999876
No 37
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=61.15 E-value=39 Score=32.18 Aligned_cols=83 Identities=10% Similarity=-0.068 Sum_probs=47.6
Q ss_pred CCccEEEEeCCccccchHHHHHHHhh-cCCCCceEEEEecCCCCCcCCCCCC--eeecC--CC---CCCCCCCCCcccce
Q 008578 467 VSAKFVMKTDDDAFVRVDEVLTSLKR-INVHSGLLYGLINSESRPHRNPESK--WYISL--EE---WPEETYPPWAHGPG 538 (561)
Q Consensus 467 ~~a~yvlKvDDDtfVnvd~L~~~L~~-~~~~~~l~~G~v~~~~~P~R~~~sK--wyVs~--e~---yp~~~YPpYc~G~g 538 (561)
...+|++.+|+|..+..+.|..+++. .......+.|......... ..... .+.+. .. +....-...+.|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 45599999999999999888888876 3444556666543221111 00000 00000 00 00011134567888
Q ss_pred eecCHHHHHHHH
Q 008578 539 YVVSHDIGKAVY 550 (561)
Q Consensus 539 YVlS~dva~~I~ 550 (561)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999998885
No 38
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=60.95 E-value=52 Score=30.76 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred HhhcccCCCccEEEEeCCccccchHHHHHHHhhcC--CCCceEEEEe
Q 008578 460 CIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLI 504 (561)
Q Consensus 460 l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~--~~~~l~~G~v 504 (561)
+..+....+.+|++..|+|.++..+.|...+.... +.-..+.|..
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 44444445789999999999999988888777643 2233444543
No 39
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=60.92 E-value=7.4 Score=37.42 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=53.9
Q ss_pred hHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCC-CCceEEEEecCCCCCcCCCCCC---eeec--CCCCCC
Q 008578 454 WKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLINSESRPHRNPESK---WYIS--LEEWPE 527 (561)
Q Consensus 454 lKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~-~~~l~~G~v~~~~~P~R~~~sK---wyVs--~e~yp~ 527 (561)
-|+-.+........+.+|++..|+|+.|+.+-|...+..... ...+..| +... .|.+.-.+. -++. ...+..
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~a 94 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG-LPRG-VPARGFWSRLEAAFFNFLPGVLQA 94 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe-cccc-cCCcCHHHHHHHHHHhHHHHHHHH
Confidence 455444433221368899999999999999999888876543 3333333 2211 122111110 1110 000001
Q ss_pred CCCCCCcccceeecCHHHHHHH
Q 008578 528 ETYPPWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 528 ~~YPpYc~G~gYVlS~dva~~I 549 (561)
-.-.++|.|+.+++.+++++.+
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~ 116 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEI 116 (175)
T ss_pred hcCCCceecceeeeEHHHHHHc
Confidence 1246889999999999999877
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=59.69 E-value=63 Score=29.60 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEE
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGL 503 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~ 503 (561)
.+..+....+.+|++..|+|..+..+-|...++.. .....++|.
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~-~~~~~v~g~ 113 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA-EPGVFLSGS 113 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh-CCCcEEecc
Confidence 33445555678999999999999988887777765 233344444
No 41
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=59.22 E-value=61 Score=31.98 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=67.3
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCC--EEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGD--IQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLT 488 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--Iv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~ 488 (561)
.+.++++-..+.+.. ...+++-.+.|++ +...... .|.- | -+++..+....+.+|++.+|+|..+.++.|..
T Consensus 40 ~~eiivvDdgS~D~t-~~i~~~~~~~~~~~~v~~~~~~---~n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDGT-QDVVKQLQKVYGEDRILLRPRP---GKLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCCH-HHHHHHHHHhcCCCcEEEEecC---CCCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 566766666655532 2333333344543 3222211 1211 1 12333333334689999999999999988888
Q ss_pred HHhhcC-CCCceEEEEecCCC-C-C----cCCCCCC--eeecCCCCCCCCCCCCcccceeecCHHHHHHHHH
Q 008578 489 SLKRIN-VHSGLLYGLINSES-R-P----HRNPESK--WYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 551 (561)
Q Consensus 489 ~L~~~~-~~~~l~~G~v~~~~-~-P----~R~~~sK--wyVs~e~yp~~~YPpYc~G~gYVlS~dva~~I~~ 551 (561)
++.... .....++|...... . . .|.-.++ .++...... ... ..+.|++.++++++++.|..
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~-~d~~g~~~~~rr~~~~~i~~ 183 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW-PGV-SDLTGSFRLYKRSALEDLVS 183 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC-CCC-CcCCCcccceeHHHHHHHHh
Confidence 776543 23456677542211 0 0 0100000 000000111 111 23578888999999998864
No 42
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=57.57 E-value=1.8e+02 Score=27.86 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred CccEEEEeCCccccchHHHHHHH
Q 008578 468 SAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 468 ~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
+++|++..|+|+.+..+.|..++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHH
Confidence 67999999999999988888875
No 43
>PRK11204 N-glycosyltransferase; Provisional
Probab=55.61 E-value=1.3e+02 Score=32.42 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=58.0
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHH
Q 008578 377 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (561)
Q Consensus 377 ~~~LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKt 456 (561)
.+.+-|+|.+--+. ..|+++-..-.........+ +++....++...+.+++..+.|..+..++.. .|. -|.
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~---~n~-Gka 123 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLA---ENQ-GKA 123 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcC---CCC-CHH
Confidence 34555666654332 33444443211111123444 3443333334445555555666666655433 232 243
Q ss_pred HHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhc
Q 008578 457 LAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 457 la~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
- .+..+....+.+|++..|+|+.+..+.|...++..
T Consensus 124 ~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 124 N-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred H-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 3 34444444578999999999999999888777664
No 44
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=55.13 E-value=70 Score=32.21 Aligned_cols=34 Identities=12% Similarity=-0.125 Sum_probs=25.5
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhc
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
++++|.. .+++|++..|||+.+..+.|..+++..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4455543 278999999999999988777766653
No 45
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=54.55 E-value=23 Score=33.40 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=45.3
Q ss_pred EEEEeCCccccchHHHHHHHhhcC-CCCceEEEEecCCCCCcCCCCCCeeecCCC------C---CCCCCCCCcccceee
Q 008578 471 FVMKTDDDAFVRVDEVLTSLKRIN-VHSGLLYGLINSESRPHRNPESKWYISLEE------W---PEETYPPWAHGPGYV 540 (561)
Q Consensus 471 yvlKvDDDtfVnvd~L~~~L~~~~-~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~------y---p~~~YPpYc~G~gYV 540 (561)
||+-+|+|+.+..+-|...+.... +.-..+-|.+... +..+.-.++...... . ..-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999998888877654 2222233333221 111111122211110 0 112346778999999
Q ss_pred cCHHHHHHH
Q 008578 541 VSHDIGKAV 549 (561)
Q Consensus 541 lS~dva~~I 549 (561)
+++++++.+
T Consensus 79 ~r~~~l~~v 87 (193)
T PF13632_consen 79 FRREALREV 87 (193)
T ss_pred eeHHHHHHh
Confidence 999999877
No 46
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=51.99 E-value=74 Score=32.45 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=62.5
Q ss_pred EEEecCcCcHH-HHHHHHHHhccccccC-CCeEEEEEEecccCChhhhhh-------hhhhhccCCCEEEecccccCCCc
Q 008578 382 IGVFSTANNFK-RRMAVRRTWMQYTEVR-SGTVAVRFFVGLHKNQIVNGE-------LWNEARTYGDIQLMPFVDYYNLI 452 (561)
Q Consensus 382 IlV~Sap~n~e-rR~aIR~TW~~~~~~~-~~~v~v~FvvG~~~~~~~~~~-------L~~Ea~~ygDIv~~df~DsY~nL 452 (561)
|+|.+--...+ -...++.......... ...+.+ |++-...++..... |.+| +..-+.+-+...-.|.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~---~~~~~~v~~~~r~~~~ 78 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEE---LGAQGRIYYRRRRENT 78 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHH---hCCCCcEEEEEcCCCC
Confidence 45555555554 5666776664210000 124566 88866555433211 2222 3333344445555566
Q ss_pred hhHHHHHHhhcccC-CCccEEEEeCCccccchHHHHHHHhhc
Q 008578 453 TWKTLAICIFGTDV-VSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 453 tlKtla~l~~~~~c-~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
-+|+-.+-.+.... .+.+|++-.|.|+.+..+.|...+...
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~ 120 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRM 120 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 67776554443322 477999999999999999999888764
No 47
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=51.27 E-value=2.3e+02 Score=27.11 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=45.0
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
...++++...+.+. ....| .+...+..+.+.. .+. .-|.-+ +..+....+.+|++.+|+|+.+..+.|...+
T Consensus 28 ~~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~-~~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVIT-VPH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChH-HHHHH-HhhccCCcEEEEe-cCC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 34555555444433 22333 3345566665553 221 234432 2333334488999999999999999988888
Q ss_pred hhcC
Q 008578 491 KRIN 494 (561)
Q Consensus 491 ~~~~ 494 (561)
....
T Consensus 100 ~~~~ 103 (235)
T cd06434 100 KPFE 103 (235)
T ss_pred Hhcc
Confidence 7764
No 48
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=50.04 E-value=3.1e+02 Score=28.29 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCCEEEecccccCCCchhHH--HHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCC-ceEEEEecCC-C---C
Q 008578 437 YGDIQLMPFVDYYNLITWKT--LAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHS-GLLYGLINSE-S---R 509 (561)
Q Consensus 437 ygDIv~~df~DsY~nLtlKt--la~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~-~l~~G~v~~~-~---~ 509 (561)
+.++..+...++.- .=. -.+.+++..-. .+|++-.++|+.+..+-|.++++...... ..+.|..... . .
T Consensus 55 ~~~v~~i~~~~NlG---~agg~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~ 130 (305)
T COG1216 55 FPNVRLIENGENLG---FAGGFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLY 130 (305)
T ss_pred CCcEEEEEcCCCcc---chhhhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcc
Confidence 77887766555331 100 02333332211 11999999999999999988888754433 2333433221 1 1
Q ss_pred CcCC------CCCCe-eecCCCCCC-----CCCCCCcccceeecCHHHHHHH
Q 008578 510 PHRN------PESKW-YISLEEWPE-----ETYPPWAHGPGYVVSHDIGKAV 549 (561)
Q Consensus 510 P~R~------~~sKw-yVs~e~yp~-----~~YPpYc~G~gYVlS~dva~~I 549 (561)
+.+. -...| +....+.+. ...-.++.|++.++++++.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~v 182 (305)
T COG1216 131 IDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV 182 (305)
T ss_pred hheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHh
Confidence 1111 01122 222222221 1122257999999999999876
No 49
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.60 E-value=2.6e+02 Score=27.09 Aligned_cols=120 Identities=10% Similarity=0.019 Sum_probs=60.4
Q ss_pred CCeeEEEEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhH
Q 008578 376 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWK 455 (561)
Q Consensus 376 ~~~~LlIlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlK 455 (561)
....+-|+|.+--....-...|+.-..+.. ....+.++++.-.+.+ .....+++..+. .+......+. .-|
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~----~g~ 97 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPER----RGK 97 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCC----CCh
Confidence 344555666655443334455666555421 1122555555544433 233333322222 3444332222 123
Q ss_pred HHHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCC-CCceEEEEec
Q 008578 456 TLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINV-HSGLLYGLIN 505 (561)
Q Consensus 456 tla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~-~~~l~~G~v~ 505 (561)
.- .+..+....+.+|++.+|+|+++..+-|...+..... .-..+.|...
T Consensus 98 ~~-a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 98 AA-ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 32 2333333345699999999999998777777776532 2344555543
No 50
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=43.30 E-value=3.2e+02 Score=26.61 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhcC
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRIN 494 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~ 494 (561)
.+..+....+.+|++.+|+|+.+..+.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 444554445779999999999999999988887653
No 51
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=40.86 E-value=4.9e+02 Score=27.93 Aligned_cols=83 Identities=16% Similarity=0.068 Sum_probs=46.1
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCC---CEEEecccccCCCchhHHHH---HHhhcc-cCCCccEEEEeCCccccch
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYG---DIQLMPFVDYYNLITWKTLA---ICIFGT-DVVSAKFVMKTDDDAFVRV 483 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~yg---DIv~~df~DsY~nLtlKtla---~l~~~~-~c~~a~yvlKvDDDtfVnv 483 (561)
.+.++++-..+.|... +.+++-.+.|. .+..+...+.-.+-.-|..+ +++.+. .+.+.+|++.+|+|+.+..
T Consensus 70 ~~eIIVVDd~StD~T~-~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 70 KLHVILVDDHSTDGTA-DIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred ceEEEEEeCCCCCcHH-HHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 4667666666655432 22222222332 45554432222223345433 344442 3345899999999999999
Q ss_pred HHHHHHHhhcC
Q 008578 484 DEVLTSLKRIN 494 (561)
Q Consensus 484 d~L~~~L~~~~ 494 (561)
+.|...+....
T Consensus 149 ~~l~~lv~~~~ 159 (384)
T TIGR03469 149 DNLARLVARAR 159 (384)
T ss_pred hHHHHHHHHHH
Confidence 88888776543
No 52
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.89 E-value=72 Score=34.09 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=86.6
Q ss_pred eeEEEEEecCcCcH-HHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHH
Q 008578 378 VDLFIGVFSTANNF-KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT 456 (561)
Q Consensus 378 ~~LlIlV~Sap~n~-erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKt 456 (561)
+.+-|+|.+--++. --.+.++..-.+. -....+..+...+.+ +..+.+++-.+++++.+.+... -.....|
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d~~~d-~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK- 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDDGSTD-ETYEILEELGAEYGPNFRVIYP--EKKNGGK- 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECCCCCh-hHHHHHHHHHhhcCcceEEEec--cccCccc-
Confidence 56666676655444 3333444333331 122556555554443 3444555556666534443311 0122222
Q ss_pred HHHHhhcccCCCccEEEEeCCccccchHHHHHHHhhcCCCCce-EEEEecCCCCCc-CCCCCC-----eeecC---CCCC
Q 008578 457 LAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGL-LYGLINSESRPH-RNPESK-----WYISL---EEWP 526 (561)
Q Consensus 457 la~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l-~~G~v~~~~~P~-R~~~sK-----wyVs~---e~yp 526 (561)
...+.++.+..+.++|+..|.|+.+..|.|...+......... +.|.......+. .+..++ +.... ..+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 2345555555569999999999999999999998875433322 333321111110 000011 00000 0001
Q ss_pred -CCCCCCCcccceeecCHHHHHHHH
Q 008578 527 -EETYPPWAHGPGYVVSHDIGKAVY 550 (561)
Q Consensus 527 -~~~YPpYc~G~gYVlS~dva~~I~ 550 (561)
.......|.|.++++.+++++.+-
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g 230 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVG 230 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhC
Confidence 122578899999999999988774
No 53
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=36.81 E-value=4.9e+02 Score=28.52 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=47.0
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L 490 (561)
++.++++-..+.+ ...+.+++..+++..+....... |. -|. .+++.+....+.+|++..|+|+.+..+.+...+
T Consensus 104 ~~eIivVdDgs~D-~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEVIAINDGSSD-DTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEEEEEECCCCc-cHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHH
Confidence 4555444444433 34445555556666665544322 22 243 345555555688999999999999999888777
Q ss_pred hhc
Q 008578 491 KRI 493 (561)
Q Consensus 491 ~~~ 493 (561)
...
T Consensus 178 ~~~ 180 (444)
T PRK14583 178 APL 180 (444)
T ss_pred HHH
Confidence 654
No 54
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=36.39 E-value=65 Score=33.26 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred EEEecCcCcHHHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccccCCCchhHH-----
Q 008578 382 IGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKT----- 456 (561)
Q Consensus 382 IlV~Sap~n~erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~DsY~nLtlKt----- 456 (561)
+.|.|=.+..+|+..++++-.... + +...|+-|.++..+....+..|.. .+ +...+.-...+-
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~~~~~~~~~~~~~-~~------~~~~~~~~ls~gEiGC~ 72 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGKSEDEKDLIAELD-AG------HLLYEGRRLSPGEIGCY 72 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCccccCHHHHhcccc-ch------hhhhhccccCchhHHHH
Confidence 345666677788999999988743 2 677788887765222222222211 11 221222112111
Q ss_pred --H-HHHhhcccCCCccEEEEeCCccccchHHH--HHHHhhcCCCCceEEEEecCCCCCcCCC--CCCeeecC-CCCCCC
Q 008578 457 --L-AICIFGTDVVSAKFVMKTDDDAFVRVDEV--LTSLKRINVHSGLLYGLINSESRPHRNP--ESKWYISL-EEWPEE 528 (561)
Q Consensus 457 --l-a~l~~~~~c~~a~yvlKvDDDtfVnvd~L--~~~L~~~~~~~~l~~G~v~~~~~P~R~~--~sKwyVs~-e~yp~~ 528 (561)
. ..++-+.. -+..|++-..||+.+.=+-. +....... -...|..... +|.. ..+..+.. ..+-..
T Consensus 73 lSH~~lw~~~~~-~~~~yi~I~EDDV~l~~~f~~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T COG3306 73 LSHLKLWKKALE-ENLPYILILEDDVVLGEDFEEFLEDDLKLP---VRFLGDDIDI---HRLETFLSPNPLAFNAVFIGR 145 (255)
T ss_pred HHHHHHHHHHHh-CCCCeEEEecccccccccHHHHHHHHHhhh---hhccchHHHH---HHHHHhcccceeecccccccc
Confidence 1 11111111 15679999999999854322 22222211 1222322110 0000 00000000 111122
Q ss_pred CC----CCCcccceeecCHHHHHHHHHHhcc
Q 008578 529 TY----PPWAHGPGYVVSHDIGKAVYKRYKE 555 (561)
Q Consensus 529 ~Y----PpYc~G~gYVlS~dva~~I~~~~~~ 555 (561)
.| ..+.+-+||++|+..|+.+.+.++.
T Consensus 146 ~~~~~~~~~~gt~gYiis~~aAk~fl~~~~~ 176 (255)
T COG3306 146 NFPLLNSYHLGTAGYIISRKAAKKFLELTES 176 (255)
T ss_pred cchhhhhcccCccceeecHHHHHHHHHHhhh
Confidence 22 2346889999999999999998875
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.27 E-value=1e+02 Score=29.19 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=24.7
Q ss_pred hhcccCCCccEEEEeCCccccchHHHHHHHhhc
Q 008578 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 461 ~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
..+....+.+|++.+|+|.++..+.+...+...
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~ 97 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETL 97 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHh
Confidence 334444468999999999999988777766553
No 56
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=36.04 E-value=1.9e+02 Score=31.05 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred HHhhcccCCCccEEEEeCCccccchH---HHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCeeecCCCCCCCC-CCCCc
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEET-YPPWA 534 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd---~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwyVs~e~yp~~~-YPpYc 534 (561)
++.++-...++++++.+|||..+.++ -+.+.|.....+..+++ --..+. .++....... |... +-.|+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~-ISa~Nd------nG~~~~~~~~-~~~lyrs~ff 159 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC-ISAWND------NGKEHFVDDT-PSLLYRTDFF 159 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE-EEeecc------CCcccccCCC-cceEEEecCC
Confidence 44444333479999999999999998 44555555443433322 111111 1221111110 2222 23677
Q ss_pred ccceeecCHHHHHHH
Q 008578 535 HGPGYVVSHDIGKAV 549 (561)
Q Consensus 535 ~G~gYVlS~dva~~I 549 (561)
.|.|+++.+++-+.+
T Consensus 160 ~glGWml~r~~W~e~ 174 (334)
T cd02514 160 PGLGWMLTRKLWKEL 174 (334)
T ss_pred CchHHHHHHHHHHHh
Confidence 899999999887665
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=32.06 E-value=2.6e+02 Score=26.46 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=51.8
Q ss_pred eEEEEEEecccCChhhhhhhhhhhccCCCE-EEecccccCCCchhHHHHHHhhcccCCCccEEEEeCCccccchHHHHHH
Q 008578 411 TVAVRFFVGLHKNQIVNGELWNEARTYGDI-QLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTS 489 (561)
Q Consensus 411 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-v~~df~DsY~nLtlKtla~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~ 489 (561)
.+.++.+-+.+.+. ....+++..+.++.. ..+...... - |. .++..+......+|++.+|+|.....+.+..+
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKNR---G-KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccCC---C-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45666665555543 334455555556654 223322221 1 11 23333434445699999999999999998888
Q ss_pred Hhh-cCCCCceEEEEec
Q 008578 490 LKR-INVHSGLLYGLIN 505 (561)
Q Consensus 490 L~~-~~~~~~l~~G~v~ 505 (561)
+.. .......++|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 886 3344566777643
No 58
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=29.97 E-value=4.5e+02 Score=24.31 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCccEEEEeCCccccchHHHHHHHhhcCCCCceEEEEecCCCCCcCCCCCCee-----ecCC--------CCCCCCCCCC
Q 008578 467 VSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWY-----ISLE--------EWPEETYPPW 533 (561)
Q Consensus 467 ~~a~yvlKvDDDtfVnvd~L~~~L~~~~~~~~l~~G~v~~~~~P~R~~~sKwy-----Vs~e--------~yp~~~YPpY 533 (561)
.+.+|++.+|.|+.+.++.|..++.........+.|.... +++...|. +... .+..-.-+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS-----KNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQ 154 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee-----eCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 3689999999999999888887777654444555665432 11112221 0000 0001122456
Q ss_pred cccceeecCHHHHHH
Q 008578 534 AHGPGYVVSHDIGKA 548 (561)
Q Consensus 534 c~G~gYVlS~dva~~ 548 (561)
+.|.++++++++++.
T Consensus 155 ~~G~~~~~rr~~l~~ 169 (183)
T cd06438 155 LGGTGMCFPWAVLRQ 169 (183)
T ss_pred ecCchhhhHHHHHHh
Confidence 789999999999887
No 59
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=29.35 E-value=1.5e+02 Score=27.74 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.4
Q ss_pred ccCCCCCCCCeEEEEEEEcCceEEEEECCeEEEEEeecc
Q 008578 288 KRFFPFKQGHLFVATIRVGSEGIQTTVDGKHITSFAYRE 326 (561)
Q Consensus 288 ~~~fPF~~G~~F~lti~~~~egf~v~VnG~h~~sF~yR~ 326 (561)
.....+..|+=..++|.|..+.+.+.|||+.+.++.-..
T Consensus 119 ~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 119 SVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp SS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred cccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 356678899999999999999999999999998887665
No 60
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=28.04 E-value=51 Score=29.72 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=21.8
Q ss_pred hhHHHHHHhh-c-----ccCCCccEEEEeCCcccc
Q 008578 453 TWKTLAICIF-G-----TDVVSAKFVMKTDDDAFV 481 (561)
Q Consensus 453 tlKtla~l~~-~-----~~c~~a~yvlKvDDDtfV 481 (561)
-++++..+++ + -.|++++|+||+|++=+.
T Consensus 47 l~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 47 LYQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 4567777766 3 248999999999998653
No 61
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=25.24 E-value=9.2e+02 Score=26.38 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHhhcccCCCccEEEEeCCccccchHHHHHHHhhc
Q 008578 459 ICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 459 ~l~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
++.++.+..+.+|++..|+|..+..+.|...+...
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f 156 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRF 156 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHH
Confidence 44555555678999999999999999988877654
No 62
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.83 E-value=1.5e+02 Score=31.19 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccccccCCCeEEEEEEecccCChhhhhhhhhhhccCCCEEEecccc--cCCCchhHHHHHHhhcccCCCc
Q 008578 392 KRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVD--YYNLITWKTLAICIFGTDVVSA 469 (561)
Q Consensus 392 erR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDIv~~df~D--sY~nLtlKtla~l~~~~~c~~a 469 (561)
+.|+.-|-.=...= .....+.+.|+-|-. ....+|.+=.....-++.+++.+ .+..-+.--.++..|+.+-++.
T Consensus 20 ~~R~f~~~~~~k~f-ts~~~~~vi~~~~~~---~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~S 95 (346)
T COG4092 20 DSRQFSRTSAVKVF-TSSDITMVICLRAHE---VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCES 95 (346)
T ss_pred HHHHHhhHhhhhhc-cccccEEEEEEecch---hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccc
Confidence 45555554422210 112334444444432 33355666666666677777765 3333233334566777776799
Q ss_pred cEEEEeCCccccchHHHHHHH
Q 008578 470 KFVMKTDDDAFVRVDEVLTSL 490 (561)
Q Consensus 470 ~yvlKvDDDtfVnvd~L~~~L 490 (561)
.+++.+|-|+|.-.|+..+.|
T Consensus 96 n~vlFlDvDc~~S~dnF~k~l 116 (346)
T COG4092 96 NLVLFLDVDCFGSSDNFAKML 116 (346)
T ss_pred cEEEEEeccccccHHHHHHHH
Confidence 999999999999999998887
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.07 E-value=2e+02 Score=27.55 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=25.1
Q ss_pred hhcccCCCccEEEEeCCccccchHHHHHHHhhc
Q 008578 461 IFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRI 493 (561)
Q Consensus 461 ~~~~~c~~a~yvlKvDDDtfVnvd~L~~~L~~~ 493 (561)
..+....+.+|++.+|+|.++..+.+...+...
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHH
Confidence 444455578999999999999988877665543
No 64
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=23.84 E-value=71 Score=31.75 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCCccEEEEeCCccccchHHHHHHHhhcC--CCCceEEEEecCCCC---Cc-CCCCCCeeec----CCCCCCCCCCCCcc
Q 008578 466 VVSAKFVMKTDDDAFVRVDEVLTSLKRIN--VHSGLLYGLINSESR---PH-RNPESKWYIS----LEEWPEETYPPWAH 535 (561)
Q Consensus 466 c~~a~yvlKvDDDtfVnvd~L~~~L~~~~--~~~~l~~G~v~~~~~---P~-R~~~sKwyVs----~e~yp~~~YPpYc~ 535 (561)
..+.+|++.+|.|+.+..+.|..++.... +.-..+.|.+..... +. +...-.|..+ ......--+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 34889999999999999998887776542 222345565432111 00 0000001000 00011123456788
Q ss_pred cceeecCHHHHHHH
Q 008578 536 GPGYVVSHDIGKAV 549 (561)
Q Consensus 536 G~gYVlS~dva~~I 549 (561)
|+++++.+++++.+
T Consensus 151 G~~~~~R~~~l~~~ 164 (244)
T cd04190 151 GCFSMYRIEALKGD 164 (244)
T ss_pred CceEEEEehhhcCC
Confidence 99999998887664
No 65
>PTZ00334 trans-sialidase; Provisional
Probab=21.73 E-value=7e+02 Score=30.10 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEEEEEcC-ceEEEEECCeEEEEEeecc-cCCccceeEEEEeccc
Q 008578 291 FPFKQGHLFVATIRVGS-EGIQTTVDGKHITSFAYRE-TLEPWLVNEVRISGDL 342 (561)
Q Consensus 291 fPF~~G~~F~lti~~~~-egf~v~VnG~h~~sF~yR~-~lep~~v~~l~v~Gdv 342 (561)
-+..+|+...+.|.... ..-.++|||+.+.+-..-. .-.+..|+++.|-||-
T Consensus 638 stWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 638 SNWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred ccccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 36778888888888844 4688999999996643322 1234678999998875
Done!