BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008579
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 15/272 (5%)
Query: 36 IVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVI 95
+ KAT H PK++HL ++ T+ + ++ +L R + +W V K+LI
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 89
Query: 96 HRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFR 155
H + G+ F + L + R + LSNF D S +D S ++R Y+ +L E+ +R
Sbjct: 90 HHLMVYGNERFIQYLAS---RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYR 146
Query: 156 ILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHNY 215
+ +D + +G D G RT + L+ + N
Sbjct: 147 QVAFD-----FTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDA--LLDFNVNSNELTNG 198
Query: 216 VIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFY 275
VI A L+ K++ +++ A N+GIINL++K+F+M +++ + L+IYK+ + +S+F
Sbjct: 199 VINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFL 258
Query: 276 DVCKGLELARNFQFPVLREPPQSFLTTMEEYI 307
V + + + R P L + P S L +E+++
Sbjct: 259 KVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 15/272 (5%)
Query: 36 IVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVI 95
+ KAT H PK++HL ++ T+ + ++ +L R + +W V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 96 HRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFR 155
H + G+ F + L + R + LSNF D S +D S ++R Y+ +L E+ +R
Sbjct: 83 HHLMVYGNERFIQYLAS---RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYR 139
Query: 156 ILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHNY 215
+ +D + +G D G RT + L+ + N
Sbjct: 140 QVAFD-----FTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDA--LLDFNVNSNELTNG 191
Query: 216 VIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFY 275
VI A L+ K++ +++ A N+GIINL++K+F+M +++ + L+IYK+ + +S+F
Sbjct: 192 VINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFL 251
Query: 276 DVCKGLELARNFQFPVLREPPQSFLTTMEEYI 307
V + + + R P L + P S L +E+++
Sbjct: 252 KVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 282
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 14/251 (5%)
Query: 35 AIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIV 94
+ KAT H PK++HL ++ T+ + ++ +L R + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95 IHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + LSNF D S +D S ++R Y+ +L E+ +
Sbjct: 89 THHLMVYGNERFIQYLAS---RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHN 214
R + +D + +G D G RT + L+ + N
Sbjct: 146 RQVAFD-----FTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDA--LLDFNVNSNELTN 197
Query: 215 YVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDF 274
VI A L+ K++ +++ A N+GIINL++K+F+M +++ + L+IYK+ + +S+F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YDVCKGLELAR 285
V + + + R
Sbjct: 258 LKVAEQVGIDR 268
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 14/251 (5%)
Query: 35 AIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIV 94
+ KAT H PK++HL ++ T+ + ++ +L R + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95 IHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + LSNF D S +D S ++R Y+ +L E+ +
Sbjct: 89 THHLMVYGNERFIQYLAS---RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHN 214
R + +D + +G D G RT + L+ + N
Sbjct: 146 RQVAFD-----FTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDA--LLDFNVNSNELTN 197
Query: 215 YVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDF 274
VI A L+ K++ +++ A N+GIINL++K+F+M +++ + L+IYK+ + +S+F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YDVCKGLELAR 285
V + + + R
Sbjct: 258 LKVAEQVGIDR 268
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 128/284 (45%), Gaps = 25/284 (8%)
Query: 35 AIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIV 94
++ KAT PK++HL ++ + P + + + L R ++ NW V K+LI
Sbjct: 27 SVCKATTEECIGPKKKHLDYLVHCANE--PNVSIPHLANLLIER-SQNANWVVVYKSLIT 83
Query: 95 IHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSP-----------IAWDCSAWVRTY 143
H + G+ F + L + LS+F D + + +D S ++R Y
Sbjct: 84 THHLMAYGNERFMQYLAS---SNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRY 140
Query: 144 ALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLV 203
A +L E+ +R + +D + +G+++G R+ +
Sbjct: 141 AKYLNEKSLSYRAMAFD-----FCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEF 195
Query: 204 GCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKR 263
CQ + N VI + L+ ++ +++ NDGIINL++K+F+M + A AL++YK+
Sbjct: 196 DCQSND--LSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKK 253
Query: 264 AGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYI 307
+ + +F V + + + + P L + P S L +E+++
Sbjct: 254 FLVRMDRVGEFLKVAENVGIDKG-DIPDLTKAPSSLLDALEQHL 296
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 225 LKESFKIYCAINDGIINLVDKFFE----MPRHEAIKALEIYK-RAGQQAGSLSDFYDVCK 279
+ E +Y G + + D F MP+ + LE+ + +AG+ G+ V K
Sbjct: 255 MAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVK 314
Query: 280 GLELARNFQFPVLREPPQSFLTTMEEYIR 308
GL LA N +EP L T + +R
Sbjct: 315 GLPLAYNKDLQEDKEPLLDALATYRDSLR 343
>pdb|2JFN|A Chain A, Crystal Structure Of Escherichia Coli Glutamate Racemase
In Complex With L-Glutamate And Activator Udp-Murnac-Ala
Length = 285
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 385 ASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFD 421
A+ +++ N LA PSEP T F+SG G +D
Sbjct: 2 ATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYD 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,638,340
Number of Sequences: 62578
Number of extensions: 662945
Number of successful extensions: 1361
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 10
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)