Query 008579
Match_columns 561
No_of_seqs 215 out of 574
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:56:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 1.5E-89 3.3E-94 740.0 33.4 452 9-493 1-473 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 1.3E-66 2.8E-71 528.9 22.2 272 30-309 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 4.5E-42 9.7E-47 379.6 13.9 257 30-308 5-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 5.4E-32 1.2E-36 243.3 12.2 117 32-154 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 2E-28 4.3E-33 222.8 11.7 125 30-159 1-125 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 3.4E-12 7.5E-17 116.0 10.3 118 29-152 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1E-10 2.2E-15 104.6 10.2 111 33-150 2-112 (115)
8 cd03571 ENTH_epsin ENTH domain 99.1 8.2E-10 1.8E-14 100.9 10.5 112 32-151 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.6 2E-07 4.3E-12 97.6 9.2 114 29-150 19-135 (336)
10 cd03572 ENTH_epsin_related ENT 98.0 3.6E-05 7.8E-10 70.4 9.7 112 35-151 5-117 (122)
11 KOG2057 Predicted equilibrativ 97.6 0.00021 4.6E-09 74.3 8.2 125 28-156 20-152 (499)
12 cd03569 VHS_Hrs_Vps27p VHS dom 95.6 0.075 1.6E-06 49.9 9.3 78 30-110 3-80 (142)
13 cd03568 VHS_STAM VHS domain fa 95.6 0.061 1.3E-06 50.6 8.7 77 32-111 1-77 (144)
14 PF00790 VHS: VHS domain; Int 95.4 0.08 1.7E-06 49.2 8.7 79 29-110 3-81 (140)
15 cd03567 VHS_GGA VHS domain fam 95.3 0.11 2.3E-06 48.9 9.2 77 32-111 2-78 (139)
16 cd03565 VHS_Tom1 VHS domain fa 95.3 0.13 2.8E-06 48.2 9.7 77 32-110 2-78 (141)
17 smart00288 VHS Domain present 95.1 0.12 2.5E-06 47.9 8.7 76 33-111 2-77 (133)
18 cd03561 VHS VHS domain family; 94.8 0.16 3.5E-06 46.8 8.8 75 33-110 2-76 (133)
19 KOG2199 Signal transducing ada 82.8 6 0.00013 43.1 8.8 80 29-111 6-85 (462)
20 KOG0414 Chromosome condensatio 80.9 23 0.00049 43.6 13.4 180 71-283 360-573 (1251)
21 KOG1087 Cytosolic sorting prot 60.4 36 0.00078 38.3 8.5 76 32-110 2-77 (470)
22 KOG1086 Cytosolic sorting prot 56.3 30 0.00065 38.4 6.7 82 29-113 6-87 (594)
23 KOG2236 Uncharacterized conser 47.7 21 0.00047 39.7 4.1 18 524-542 439-456 (483)
24 KOG1924 RhoA GTPase effector D 32.1 8.4E+02 0.018 29.7 13.6 24 216-239 405-432 (1102)
25 KOG1915 Cell cycle control pro 32.1 80 0.0017 35.8 5.4 27 185-211 150-176 (677)
26 KOG3520 Predicted guanine nucl 32.0 1.9E+02 0.0041 36.1 8.9 71 216-290 447-529 (1167)
27 KOG0946 ER-Golgi vesicle-tethe 31.5 3E+02 0.0065 33.2 10.1 70 67-141 19-114 (970)
28 PF02042 RWP-RK: RWP-RK domain 31.2 56 0.0012 25.9 3.0 34 242-284 9-42 (52)
29 KOG2675 Adenylate cyclase-asso 29.1 8.8E+02 0.019 27.4 13.6 29 251-279 101-129 (480)
30 PF02184 HAT: HAT (Half-A-TPR) 28.2 45 0.00097 23.9 1.8 25 255-279 4-28 (32)
31 KOG4849 mRNA cleavage factor I 25.7 1.3E+02 0.0029 32.6 5.6 14 482-495 263-276 (498)
32 COG5391 Phox homology (PX) dom 21.1 3.5E+02 0.0077 31.0 8.2 71 187-282 444-514 (524)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-89 Score=739.97 Aligned_cols=452 Identities=44% Similarity=0.689 Sum_probs=346.9
Q ss_pred HHHhhhccccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHH
Q 008579 9 KAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVA 88 (561)
Q Consensus 9 ka~GalKD~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVA 88 (561)
+|+|++||++|||+|+|++.++++++||+|||+|+++|||+|||++|+.+|+.++ +++.+|+++|++||++||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998889999999999999999999999999999999875 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccccccccCCCC
Q 008579 89 LKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPR 168 (561)
Q Consensus 89 lKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~r~~k 168 (561)
+||||||||||++|++.|.+++.++ .++|+|++|+|++++.+|||++|||+|++||+||++||+..++|++..+..+
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~---~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~ 155 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR---NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGK 155 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc---ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence 9999999999999999999887654 4789999999999999999999999999999999999999999998543211
Q ss_pred CCCCCCCCCcccccCC-HHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008579 169 PVQGEDKGYSRTRDLE-SEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFF 247 (561)
Q Consensus 169 ~~~~~~~~~~~~~~l~-~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fF 247 (561)
.....+++. .+.+|+++++||+||+++|+|+|.+.+.+|+||++||.|||+|||+||++||+|||||||+||
T Consensus 156 -------~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff 228 (491)
T KOG0251|consen 156 -------EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF 228 (491)
T ss_pred -------cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122344555 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHHhCCCCCCCCCCcccccCCC
Q 008579 248 EMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRP 327 (561)
Q Consensus 248 eM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylrdap~~~~~~~~~~~~~~~~ 327 (561)
||+++||+++|+|||||.+|+|+|.+||++||++|+.|.++||+|+++|.++|++|||||++.+..+.............
T Consensus 229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~ 308 (491)
T KOG0251|consen 229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFS 308 (491)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999764332211100000000
Q ss_pred CCCCCCCC--CCCC-CCCCCCCCCCC-CCCCCCCCCC----CCCCCCCCCCCCCcccCCCCCCCCchhhhhhccceeccc
Q 008579 328 EEGPSEDA--NVPN-DEPEAPSSDIV-PVTNIEDGPP----TPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIV 399 (561)
Q Consensus 328 ~~~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~dll~l~~~~~~~~~~~~~~~lala~~ 399 (561)
......+. .... .+.++...+.+ ++...+..|. .+...++..+.++|++.+.+..+..++.+..|+||||+
T Consensus 309 ~~~~~~e~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 387 (491)
T KOG0251|consen 309 TDFESSESSSRLEEPEEQKEVIEELQEPLEQEEDQPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL- 387 (491)
T ss_pred cchhccccccccccchhhhhccccccccccccccCCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-
Confidence 00000010 0000 00000000000 0111111110 01111111223346666666677899999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCCCCCccceeeccCCCCCCcchhhhhhcCCcchhhhhhccHHHHHHhc--C--CCCCCC--
Q 008579 400 PSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQ--Q--PAYGAA-- 473 (561)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~welalv~~~s~~~~~~~~~~l~gg~d~l~l~~~y~~~~~~~~--~--~~~g~~-- 473 (561)
.+ + ++ ..+|||+++|+..++.-...+..++|||| +||||| ++.+|+. . +++|++
T Consensus 388 ~~-~-----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~ 447 (491)
T KOG0251|consen 388 PF-P-----NH----------TGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPF 447 (491)
T ss_pred CC-C-----CC----------CCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCcc
Confidence 21 1 11 34566666666554432111112899999 999999 7777765 2 234532
Q ss_pred C--C---CCC-CccCccccccCCCCC
Q 008579 474 A--P---NPF-DVQDIFAMSNGVAPP 493 (561)
Q Consensus 474 ~--~---~~~-~~~dpfaaS~~v~pp 493 (561)
. + +++ .+.+||+.|..+++|
T Consensus 448 ~~~p~~~~~~~~~~~~~~~~~~~a~~ 473 (491)
T KOG0251|consen 448 GAQPMPAMAALPQPYPVGQPPFPAQL 473 (491)
T ss_pred ccCCchhhhcccccCCCCCCCCcCcc
Confidence 1 1 222 245999999999987
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=1.3e-66 Score=528.89 Aligned_cols=272 Identities=49% Similarity=0.844 Sum_probs=216.4
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
+++++||+|||+|+++|||+||||+||.+|+. + .+++.|+|+|++|+++++||+||||||||||||||+||+.|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999998 2 67899999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccccC--CCCCCCCcccHHHHHHHHHHHHHHHHhhhcccc---ccccCCCCCCCCCCCCCccc-ccC
Q 008579 110 LLNFQLRGRILQLSNFKD--DSSPIAWDCSAWVRTYALFLEERLECFRILKYD---IEAERLPRPVQGEDKGYSRT-RDL 183 (561)
Q Consensus 110 ll~y~~r~~iL~Ls~F~D--~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d---~~~~r~~k~~~~~~~~~~~~-~~l 183 (561)
+.++ +.++++++++|+ ++++.+|+|+.|||+|++||++|+.||+.++.+ ++..... .....+ .... ..+
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~-~~~~~~--~~~~~~~~ 153 (280)
T PF07651_consen 79 LLRY--NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEG-SLVSRD--DPNSRKSL 153 (280)
T ss_dssp HHHT--T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S------T--TSHCC-C-
T ss_pred HHHc--ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHcccccccccccccc-cccccc--Cccccccc
Confidence 8766 345667777666 777889999999999999999999999999987 3321110 000011 1122 467
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 008579 184 ESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKR 263 (561)
Q Consensus 184 ~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~~~da~kaLeiykR 263 (561)
++++||++++.||++|+++++|+|.+.+.+|+|+++||++||+||++||+.+|+||++|+|+||+|++.||.++++||+|
T Consensus 154 ~~~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~r 233 (280)
T PF07651_consen 154 DIDDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKR 233 (280)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHHh
Q 008579 264 AGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIRE 309 (561)
Q Consensus 264 f~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylrd 309 (561)
|.+|+++|++||++||++++.+.++||+|+++|++|+.+|||||+|
T Consensus 234 f~~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 234 FAKQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999988888999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=4.5e-42 Score=379.62 Aligned_cols=257 Identities=22% Similarity=0.298 Sum_probs=222.2
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
.++-+||.|||+.+|+|||+||||.||.+||.+++ +.+||...+|++...+.+.+||+|||||||||||||++..+
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~e 80 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEE 80 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHH
Confidence 67889999999999999999999999999999985 45799999999999999999999999999999999999988
Q ss_pred HHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcccc-----ccccCCCCCCCCCCCCCcccccCC
Q 008579 110 LLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYD-----IEAERLPRPVQGEDKGYSRTRDLE 184 (561)
Q Consensus 110 ll~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d-----~~~~r~~k~~~~~~~~~~~~~~l~ 184 (561)
..+| ++||.+|+++|++.+ .+||.+||.|++||..||.||.+++.. +..+.+.+...|.+. ..+++
T Consensus 81 s~r~--r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~----~felt 151 (980)
T KOG0980|consen 81 SQRY--KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNN----GFELT 151 (980)
T ss_pred HHHH--HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHH----HHHHH
Confidence 8777 789999999999864 789999999999999999999998752 222222223334443 34455
Q ss_pred H--HHHHHHHHHHHHHHHHHhcCccCC-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hHHHHHHH
Q 008579 185 S--EELLEQLPALQQLLHRLVGCQPEG-AAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMP---RHEAIKAL 258 (561)
Q Consensus 185 ~--e~LL~~L~~LQ~Ll~rlL~crp~g-~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~---~~da~kaL 258 (561)
+ .++++.+..||+.||+.++..+.. ...+|+|++++|++||.||+.||++++. ++|.|+ .+|++.+
T Consensus 152 vdmmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vk-------mlfkLHs~vp~dtLeg- 223 (980)
T KOG0980|consen 152 VDMMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVK-------MLFKLHSQVPPDTLEG- 223 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHH-------HHHHHHcCCCHHHhhh-
Confidence 5 488999999999999999975543 4568999999999999999999999999 566665 4666666
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccc-cccccCCCCCCCCchhHH--HHHHHHH
Q 008579 259 EIYKRAGQQAGSLSDFYDVCKGLEL-ARNFQFPVLREPPQSFLT--TMEEYIR 308 (561)
Q Consensus 259 eiykRf~kQ~e~L~~Fy~~ck~l~~-~r~~~iP~L~~~P~sfL~--~LEEylr 308 (561)
++.||..||++|++||..|+++.| ++.|+||+|++-||+|+. .+++|+.
T Consensus 224 -hRdRf~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 224 -HRDRFHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred -HHHHHHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 799999999999999999999999 899999999999999997 6999886
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=5.4e-32 Score=243.33 Aligned_cols=117 Identities=50% Similarity=0.793 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELL 111 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell 111 (561)
+++||.|||+|+++|||+||||+||.+|++++ .++.+|+++|.+|+.. +||+|+||+|||||+|||+|++.|.++++
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999998753 6889999999999987 99999999999999999999999988875
Q ss_pred HHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHh
Q 008579 112 NFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECF 154 (561)
Q Consensus 112 ~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~ 154 (561)
.+ ..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~~---~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR---RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc---cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 43 56789999999887778999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=2e-28 Score=222.81 Aligned_cols=125 Identities=45% Similarity=0.593 Sum_probs=112.1
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
++++++|.|||||+++|||+|||++|+.+|+.++ .++..|+..|.+||.++++|+|++|||+|||+||++|++.+..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999999864 57899999999999887899999999999999999999988766
Q ss_pred HHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccc
Q 008579 110 LLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKY 159 (561)
Q Consensus 110 ll~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~ 159 (561)
+... +..+++|++|++. ++.+||++.|||.|++||++||.+++.++.
T Consensus 79 ~~~~--~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~ 125 (127)
T smart00273 79 ALRN--RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKE 125 (127)
T ss_pred HHHh--hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhc
Confidence 5433 4568999999986 457899999999999999999999988764
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.36 E-value=3.4e-12 Score=116.05 Aligned_cols=118 Identities=26% Similarity=0.359 Sum_probs=92.8
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhh--ccCCChhHHHHHHHHHHHHHhcCCcch
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRL--AKTRNWTVALKTLIVIHRTLREGDPTF 106 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL--~kTrnWiVAlKtLIllHrLLreG~p~f 106 (561)
|+++++-|.+||+.++.+|..+++.+|..+|+.+ .+...++..|.+|| .+.++|.+++|+|.+||.||+.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4688999999999999999999999999999886 45677899999999 456899999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 008579 107 REELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLE 152 (561)
Q Consensus 107 ~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~ 152 (561)
..++..+ ...|-.|.+|+. .++.+.+.+.-||..|+-|.+-|.
T Consensus 78 ~~~~~~~--~~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDH--IDIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHT--HHHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 8876433 234777888865 223467888889999999877653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.19 E-value=1e-10 Score=104.59 Aligned_cols=111 Identities=22% Similarity=0.256 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHHH
Q 008579 33 DVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLN 112 (561)
Q Consensus 33 ~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell~ 112 (561)
++.|.|||+++...|+.+++.+|...+... + .+...++.+|.+||.. +||.|++|+|.|+|.|++.|++.|..++..
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-~-~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET-N-VGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-C-ccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 578999999999999999999999999765 2 4678899999999965 699999999999999999999999877643
Q ss_pred HhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Q 008579 113 FQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEER 150 (561)
Q Consensus 113 y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeR 150 (561)
+..+.++.+| +.....+.+.+..||.++++|.+.
T Consensus 79 ---~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 79 ---NDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ---hHHHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 2334455454 222223466789999999999774
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.07 E-value=8.2e-10 Score=100.90 Aligned_cols=112 Identities=22% Similarity=0.265 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAK-TRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~k-TrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
.++-|..|||.++.+|..+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+||+.||+.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5788999999999999999999999999875 4678899999999963 47999999999999999999999988776
Q ss_pred HHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHHHH
Q 008579 111 LNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEERL 151 (561)
Q Consensus 111 l~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLdeRL 151 (561)
.... ..|-.|.+|. |.. +.|.+.-||.=|+-|.+-|
T Consensus 79 r~~~--~~i~~L~~F~~~d~~---g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 79 RENL--YIIRTLKDFQYIDEN---GKDQGINVREKAKEILELL 116 (123)
T ss_pred HHhH--HHHHhhccceeeCCC---CCchhHHHHHHHHHHHHHh
Confidence 4332 2345566665 332 4578899998887775543
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.56 E-value=2e-07 Score=97.63 Aligned_cols=114 Identities=23% Similarity=0.284 Sum_probs=91.7
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhc-cCCChhHHHHHHHHHHHHHhcCCcchH
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLA-KTRNWTVALKTLIVIHRTLREGDPTFR 107 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~-kTrnWiVAlKtLIllHrLLreG~p~f~ 107 (561)
|++.++.|.-||+.+...|.-+++-+|..+|+.. ..+..+|..|.||+. .-++|++++|+|.||-.||..|+..|.
T Consensus 19 y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~ 95 (336)
T KOG2056|consen 19 YSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVV 95 (336)
T ss_pred chHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHH
Confidence 7899999999999999999999999999999986 468899999999997 458999999999999999999999887
Q ss_pred HHHHHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHHH
Q 008579 108 EELLNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEER 150 (561)
Q Consensus 108 eell~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLdeR 150 (561)
+++.... -.|--|..|. |.. +.|.+..||.-++-|..-
T Consensus 96 ~~~ren~--~~I~tL~~Fq~iD~~---G~dqG~nVRkkak~l~~L 135 (336)
T KOG2056|consen 96 DETRENI--YTIETLKDFQYIDED---GKDQGLNVRKKAKELLSL 135 (336)
T ss_pred HHHHhhh--HHHHHHhhceeeCCC---CccchHHHHHHHHHHHHH
Confidence 6652211 1233344554 332 467788899888777443
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.01 E-value=3.6e-05 Score=70.45 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHHHHh
Q 008579 35 AIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQ 114 (561)
Q Consensus 35 AIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell~y~ 114 (561)
.|.|||+.++.||--=-.++|...|+.+. ..+..++..|.+||.+ ++..|-+|+|-+|-.|++.|++.|+.++.+.+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 58899999988776666679999998752 4677899999999975 67888899999999999999999987765442
Q ss_pred hcccccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 008579 115 LRGRILQLSNFKDDSSP-IAWDCSAWVRTYALFLEERL 151 (561)
Q Consensus 115 ~r~~iL~Ls~F~D~ss~-~a~d~safVR~Ya~YLdeRL 151 (561)
..|..+.+|+....+ .+++.+..||.=|+=|-+-+
T Consensus 82 --~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 --AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred --HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 246778888864443 46788899998887665533
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00021 Score=74.33 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=93.8
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhc--cCCChhHHHHHHHHHHHHHhcCCcc
Q 008579 28 DYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLA--KTRNWTVALKTLIVIHRTLREGDPT 105 (561)
Q Consensus 28 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~--kTrnWiVAlKtLIllHrLLreG~p~ 105 (561)
+|++++.-|..|||.+...|.---+.+|-.+|.... ..++..++..|..|+- .-.+|.-++|+||||..||+.|...
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999997521 1467888999999984 2369999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHH------HHHHHHhhh
Q 008579 106 FREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFL------EERLECFRI 156 (561)
Q Consensus 106 f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YL------deRL~~~r~ 156 (561)
|.++-..+.-.-+-|.--+|.|+. +.|.+-.||.-.+-| |+||+.-|+
T Consensus 99 ~VqeAREh~YdLR~LEnYhfiDEh---GKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAYDLRRLENYHFIDEH---GKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHHHHHhhhhccchhhh---CccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 876642221100112223566765 467788899888777 456655554
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.63 E-value=0.075 Score=49.87 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=66.2
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
+.++..|.|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4689999999999888888888888877776543 356789999999995 5899999999999999999988878766
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 5
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.62 E-value=0.061 Score=50.64 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELL 111 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell 111 (561)
++..|.|||+....-|+--.+=+|-...... + .+...++.+|.+||. .+|..|++.+|.|+--++..+...|..|+.
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 77 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEVA 77 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 3678999999998888888888887776654 2 456889999999995 589999999999999999999988887763
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.43 E-value=0.08 Score=49.19 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=64.2
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFRE 108 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~e 108 (561)
...++..|.|||++...-|+--.+-.|........ .....++.+|.+||. .+|.-|.+-+|.|+.-|+..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~--~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP--DGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST--THHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35789999999999988788888777777766552 456789999999995 489999999999999999999988876
Q ss_pred HH
Q 008579 109 EL 110 (561)
Q Consensus 109 el 110 (561)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.35 E-value=0.11 Score=48.85 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELL 111 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell 111 (561)
++..|.|||+....-|+--++-+|....... + .....++.+|.+||. .+|..|++-+|.++--++..+...|..++.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6889999999999889999998888887654 3 356789999999995 689999999999999999998888877763
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.29 E-value=0.13 Score=48.20 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
++..|.|||+....-++--.+=+|-....... .....++.+|.+||...+|..|++-+|.|+--++..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999988888888888877775532 456889999999997567999999999999999999999888776
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.13 E-value=0.12 Score=47.90 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 008579 33 DVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELL 111 (561)
Q Consensus 33 ~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell 111 (561)
+..|.|||+....-|+--.+-+|....... + .....++.+|.+||. .+|..|++.+|.++--++..+...|..++.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~-~-~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~ 77 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINST-P-DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVA 77 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 567999999988888888888888777655 2 456789999999995 689999999999999999998888877653
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.82 E-value=0.16 Score=46.79 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 33 DVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 33 ~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
+..|.|||+....-|+-.-+-+|........ .....++.+|.+||. .+|..|++-+|.++--++..+...|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4679999998877788888888877776542 456789999999995 58999999999999999999998887665
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.77 E-value=6 Score=43.14 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFRE 108 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~e 108 (561)
...++-.|.|||+...+-=+=-+|=.+-...... |. .-..|+.+|.|||+ +++.-|++-+|-|+--+.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~~-~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-PD-GGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-Cc-ccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4568899999999887755555554444443333 32 34789999999996 689999999999999999887777877
Q ss_pred HHH
Q 008579 109 ELL 111 (561)
Q Consensus 109 ell 111 (561)
|+.
T Consensus 83 EVs 85 (462)
T KOG2199|consen 83 EVS 85 (462)
T ss_pred HHh
Confidence 763
No 20
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.89 E-value=23 Score=43.61 Aligned_cols=180 Identities=21% Similarity=0.226 Sum_probs=99.7
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCc--chHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHH
Q 008579 71 CIHALGRRLAKTRNWTVALKTLIVIHRTLREGDP--TFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLE 148 (561)
Q Consensus 71 ~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p--~f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLd 148 (561)
.+..|..|+. +-+.-|-.|.|-+.||+.+.-.- .++.+++.- -.+..-|. |..||.||--|.
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~l-------a~grl~Dk--------SslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLEL-------AIGRLEDK--------SSLVRKNAIQLL 423 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHH-------Hhcccccc--------cHHHHHHHHHHH
Confidence 6778888985 56889999999999999887442 244444322 12223333 568999998887
Q ss_pred HHHHHhhhcccccc-----------c-------cCCCCCCCCCCCCCcccccCCHHHHHHHHHHHH----HHHHHHhcCc
Q 008579 149 ERLECFRILKYDIE-----------A-------ERLPRPVQGEDKGYSRTRDLESEELLEQLPALQ----QLLHRLVGCQ 206 (561)
Q Consensus 149 eRL~~~r~~~~d~~-----------~-------~r~~k~~~~~~~~~~~~~~l~~e~LL~~L~~LQ----~Ll~rlL~cr 206 (561)
..+--+ ++|... . +..+...-+ +...+..+.....++++..+.-. ........|+
T Consensus 424 ~~~L~~--~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~-~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~ 500 (1251)
T KOG0414|consen 424 SSLLDR--HPFSSELRSDDLRAKLEKELQKLEEELESTEHLE-EEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQ 500 (1251)
T ss_pred HHHHhc--CCchhhhcchhhhhhHHHHHHhhhhhcccccccc-hhhccchhhhhcccceeechhhhhhhccccccccccc
Confidence 665432 333111 0 000000000 00001111111123333333222 1112222232
Q ss_pred cC---------CCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008579 207 PE---------GAAVHNYV-IQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYD 276 (561)
Q Consensus 207 p~---------g~a~~N~l-vl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~ 276 (561)
+. .....|.+ -+-+++.-++|.++.-+.+.+++-.++...|.=.+.|..++. +||-
T Consensus 501 ~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~I--------------dfl~ 566 (1251)
T KOG0414|consen 501 EEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAI--------------DFLV 566 (1251)
T ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHH
Confidence 11 01123333 335677777999999999999999999999888888877775 5666
Q ss_pred Hhhcccc
Q 008579 277 VCKGLEL 283 (561)
Q Consensus 277 ~ck~l~~ 283 (561)
.|+..|+
T Consensus 567 ~c~~F~I 573 (1251)
T KOG0414|consen 567 RCKQFGI 573 (1251)
T ss_pred HHHHhCC
Confidence 7777765
No 21
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.41 E-value=36 Score=38.30 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
+...|-|||+..-.-|+=-..=+|-....... ......+++|.|||.. ++..|++=+|.||--|+..-...|..++
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46789999999877777665555544443332 2345789999999963 5668999999999988887666665333
No 22
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.27 E-value=30 Score=38.45 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=60.4
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFRE 108 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~e 108 (561)
...|+..|.|||+....--+=|+|.-++.-.... | .+-.-.+|.|+..|.-..-| -|+-+|-++..+++.|...|.+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~ 82 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHE 82 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 3568999999999887444445666555554432 3 22244688999999765566 6888999999999999999998
Q ss_pred HHHHH
Q 008579 109 ELLNF 113 (561)
Q Consensus 109 ell~y 113 (561)
|+-+|
T Consensus 83 evgkf 87 (594)
T KOG1086|consen 83 EVGKF 87 (594)
T ss_pred HHHHH
Confidence 88655
No 23
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.71 E-value=21 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=10.8
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 008579 524 HLMMNPSNPFGDTGFGAFP 542 (561)
Q Consensus 524 ~~~~~~~npf~~~~~~~~~ 542 (561)
...++-.|||+.. |+.||
T Consensus 439 ~~~~g~~~P~~~m-pp~~P 456 (483)
T KOG2236|consen 439 PANFGQANPFNQM-PPAYP 456 (483)
T ss_pred cccccccCccccC-CCCCc
Confidence 3455667777765 55554
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.11 E-value=8.4e+02 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHH
Q 008579 216 VIQYALALVLKESFK----IYCAINDGI 239 (561)
Q Consensus 216 lvl~AL~lLVkDS~~----LY~~inegi 239 (561)
+-+--..++|++=+- -|+.|-+.|
T Consensus 405 LSILQhlllirnDy~~rpqYykLIEecI 432 (1102)
T KOG1924|consen 405 LSILQHLLLIRNDYYIRPQYYKLIEECI 432 (1102)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 333344455555443 244444444
No 25
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.06 E-value=80 Score=35.84 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccCCCc
Q 008579 185 SEELLEQLPALQQLLHRLVGCQPEGAA 211 (561)
Q Consensus 185 ~e~LL~~L~~LQ~Ll~rlL~crp~g~a 211 (561)
+++.|..+.-..++..|-+.|.|...+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 468889999999999999999886533
No 26
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=31.98 E-value=1.9e+02 Score=36.07 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH------------HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 008579 216 VIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAI------------KALEIYKRAGQQAGSLSDFYDVCKGLEL 283 (561)
Q Consensus 216 lvl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~~~da~------------kaLeiykRf~kQ~e~L~~Fy~~ck~l~~ 283 (561)
+-..+|....+|+..||..|-| ||..+|+-.-.++. .||+.||--.+.-.+...|+..|.+--+
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~ 522 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPV 522 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchH
Confidence 4456666777777765555554 66677887654443 2444444433344555666665444444
Q ss_pred cccccCC
Q 008579 284 ARNFQFP 290 (561)
Q Consensus 284 ~r~~~iP 290 (561)
+|..++|
T Consensus 523 cRRL~lk 529 (1167)
T KOG3520|consen 523 CRRLGLK 529 (1167)
T ss_pred HHhhcch
Confidence 4444433
No 27
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=3e+02 Score=33.21 Aligned_cols=70 Identities=26% Similarity=0.379 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHhhc------cCCChhHHHHHH--------------HHHHHHHhcCCcchHHHHHHHhhccccccccccc
Q 008579 67 DVAYCIHALGRRLA------KTRNWTVALKTL--------------IVIHRTLREGDPTFREELLNFQLRGRILQLSNFK 126 (561)
Q Consensus 67 ~v~~~v~aLsrRL~------kTrnWiVAlKtL--------------IllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~ 126 (561)
.+++.|..|..|+. .-|+.+-++|++ .+||-|=||+.. .|++.|.- .+++.+-.--
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D---~E~ik~~L-dTl~il~~~d 94 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD---PEIIKYAL-DTLLILTSHD 94 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC---HHHHHHHH-HHHHHHHhcC
Confidence 45566666666663 125666666665 357777788764 35666631 2233332111
Q ss_pred ------CCCCCCCCcccHHHH
Q 008579 127 ------DDSSPIAWDCSAWVR 141 (561)
Q Consensus 127 ------D~ss~~a~d~safVR 141 (561)
|++. .+.++|.|+.
T Consensus 95 d~~~v~dds~-qsdd~g~~ia 114 (970)
T KOG0946|consen 95 DSPEVMDDST-QSDDLGLWIA 114 (970)
T ss_pred cchhhcccch-hhhHHHHHHH
Confidence 2333 5667777764
No 28
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=31.23 E-value=56 Score=25.85 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=25.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 008579 242 LVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELA 284 (561)
Q Consensus 242 LLd~fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~ 284 (561)
-|..||.|+..+|.+.|.+-....| ..|+.+|+.
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~ 42 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIP 42 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCC
Confidence 4568999999999998876544443 468888864
No 29
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=29.14 E-value=8.8e+02 Score=27.40 Aligned_cols=29 Identities=10% Similarity=0.357 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 008579 251 RHEAIKALEIYKRAGQQAGSLSDFYDVCK 279 (561)
Q Consensus 251 ~~da~kaLeiykRf~kQ~e~L~~Fy~~ck 279 (561)
+++..+..+..+.+.+++-++.+|=+.=|
T Consensus 101 KPds~elad~LkPI~e~i~eI~~fkE~nR 129 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEEIGEINNFKEKNR 129 (480)
T ss_pred CCChHHHHHHhhhHHHhhhHHhhhhhccc
Confidence 45666777777888777777766655444
No 30
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.21 E-value=45 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhh
Q 008579 255 IKALEIYKRAGQQAGSLSDFYDVCK 279 (561)
Q Consensus 255 ~kaLeiykRf~kQ~e~L~~Fy~~ck 279 (561)
.+|=.||.||...+-.++.+..+||
T Consensus 4 dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 4566799999999999999999886
No 31
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=25.74 E-value=1.3e+02 Score=32.63 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.0
Q ss_pred CccccccCCCCChh
Q 008579 482 DIFAMSNGVAPPPS 495 (561)
Q Consensus 482 dpfaaS~~v~pp~~ 495 (561)
-|--.+++++|++.
T Consensus 263 pP~~t~~G~pP~pp 276 (498)
T KOG4849|consen 263 PPQQTMLGNPPLPP 276 (498)
T ss_pred CCccccCCCCCCCc
Confidence 45556677777755
No 32
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=21.07 E-value=3.5e+02 Score=31.01 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 008579 187 ELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQ 266 (561)
Q Consensus 187 ~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~~~da~kaLeiykRf~k 266 (561)
.-.+.+..||+-+..+.+| +....+..+.|++.+-+.+++||+....|-.++++.|..
T Consensus 444 sr~k~~~~Lqq~~~~l~~~-------------------L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~--- 501 (524)
T COG5391 444 SRSKSIESLQQDKEKLEEQ-------------------LAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVAD--- 501 (524)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---
Confidence 3456777777766555554 456678889999999999999999988887777755543
Q ss_pred hHHHHHHHHHHhhccc
Q 008579 267 QAGSLSDFYDVCKGLE 282 (561)
Q Consensus 267 Q~e~L~~Fy~~ck~l~ 282 (561)
.-++|+++|..+.
T Consensus 502 ---~hie~~~~~Le~W 514 (524)
T COG5391 502 ---SHIEWAEENLEIW 514 (524)
T ss_pred ---HHHHHHHHHHHHH
Confidence 3457788876653
Done!